From 8c291f66b86140a656aace7b578ac212d5391e62 Mon Sep 17 00:00:00 2001
From: Bjoern Gruening <bjoern.gruening@gmail.com>
Date: Fri, 8 Jan 2016 14:24:36 +0100
Subject: [PATCH] add first R packages

---
 recipes/bioconductor-ballgown/1.0.3/build.sh  | 388 +++++++++++++
 recipes/bioconductor-ballgown/1.0.3/meta.yaml |  29 +
 recipes/bioconductor-ballgown/1.0.3/test.sh   |  13 +
 recipes/bioconductor-deseq2/1.8.2gx/build.sh  | 532 ++++++++++++++++++
 recipes/bioconductor-deseq2/1.8.2gx/meta.yaml |  30 +
 recipes/bioconductor-deseq2/1.8.2gx/test.sh   |  13 +
 6 files changed, 1005 insertions(+)
 create mode 100644 recipes/bioconductor-ballgown/1.0.3/build.sh
 create mode 100644 recipes/bioconductor-ballgown/1.0.3/meta.yaml
 create mode 100644 recipes/bioconductor-ballgown/1.0.3/test.sh
 create mode 100644 recipes/bioconductor-deseq2/1.8.2gx/build.sh
 create mode 100644 recipes/bioconductor-deseq2/1.8.2gx/meta.yaml
 create mode 100644 recipes/bioconductor-deseq2/1.8.2gx/test.sh

diff --git a/recipes/bioconductor-ballgown/1.0.3/build.sh b/recipes/bioconductor-ballgown/1.0.3/build.sh
new file mode 100644
index 0000000000000..03e17d7cbe472
--- /dev/null
+++ b/recipes/bioconductor-ballgown/1.0.3/build.sh
@@ -0,0 +1,388 @@
+#!/bin/sh
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/BiocGenerics_0.12.1.tar.gz
+sha256sum BiocGenerics_0.12.1.tar.gz | awk '{ if ($1 == "d451f2c72c46a7b5fa6dd252a207ba72f0a5a86d1bfc95408935f079efa85f77") exit 0; else exit 1}'
+tar xfz BiocGenerics_0.12.1.tar.gz
+cd BiocGenerics
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm BiocGenerics -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/S4Vectors_0.4.0.tar.gz
+sha256sum S4Vectors_0.4.0.tar.gz | awk '{ if ($1 == "8a696633faf34458580ca851a77eb55cfa60e454a5412216c8dd3c19fac46b78") exit 0; else exit 1}'
+tar xfz S4Vectors_0.4.0.tar.gz
+cd S4Vectors
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm S4Vectors -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/IRanges_2.0.1.tar.gz
+sha256sum IRanges_2.0.1.tar.gz | awk '{ if ($1 == "6c26fcb89570f869fe476688d59e99f4c4eb8358a4f8a16d00f77ab04a9c3db9") exit 0; else exit 1}'
+tar xfz IRanges_2.0.1.tar.gz
+cd IRanges
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm IRanges -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/GenomeInfoDb_1.2.4.tar.gz
+sha256sum GenomeInfoDb_1.2.4.tar.gz | awk '{ if ($1 == "459d8904e30999435f7dd2ce40fc9a1b076982f798a6d2fb752d0311a7bcbd4b") exit 0; else exit 1}'
+tar xfz GenomeInfoDb_1.2.4.tar.gz
+cd GenomeInfoDb
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm GenomeInfoDb -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/XVector_0.6.0.tar.gz
+sha256sum XVector_0.6.0.tar.gz | awk '{ if ($1 == "ea61b364a647b590a566c69429e9eb9d10296825bac2d8168881dd8404d8ba14") exit 0; else exit 1}'
+tar xfz XVector_0.6.0.tar.gz
+cd XVector
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm XVector -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/GenomicRanges_1.18.4.tar.gz
+sha256sum GenomicRanges_1.18.4.tar.gz | awk '{ if ($1 == "1ff768364df263f7c55b31488b8718f173ae06f4d3bc6f49d4f24ccf300f4aa9") exit 0; else exit 1}'
+tar xfz GenomicRanges_1.18.4.tar.gz
+cd GenomicRanges
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm GenomicRanges -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/RColorBrewer_1.1-2.tar.gz
+sha256sum RColorBrewer_1.1-2.tar.gz | awk '{ if ($1 == "f3e9781e84e114b7a88eb099825936cc5ae7276bbba5af94d35adb1b3ea2ccdd") exit 0; else exit 1}'
+tar xfz RColorBrewer_1.1-2.tar.gz
+cd RColorBrewer
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm RColorBrewer -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/lattice_0.20-30.tar.gz
+sha256sum lattice_0.20-30.tar.gz | awk '{ if ($1 == "528ce0a6378334de47e11a1a7efe0f4b3b1c8b44ec8e3f0720bd9e5b122d2881") exit 0; else exit 1}'
+tar xfz lattice_0.20-30.tar.gz
+cd lattice
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm lattice -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/nlme_3.1-120.tar.gz
+sha256sum nlme_3.1-120.tar.gz | awk '{ if ($1 == "4cd65b2187d6155652d8725f62086641da373f23f3bce4170ace92705cb628ca") exit 0; else exit 1}'
+tar xfz nlme_3.1-120.tar.gz
+cd nlme
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm nlme -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/Matrix_1.1-5.tar.gz
+sha256sum Matrix_1.1-5.tar.gz | awk '{ if ($1 == "b23ea59a5218be916a3e6ac4d5f573c5e7921b1eca9a2ed918f2d8f8ef520b4f") exit 0; else exit 1}'
+tar xfz Matrix_1.1-5.tar.gz
+cd Matrix
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm Matrix -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/mgcv_1.8-5.tar.gz
+sha256sum mgcv_1.8-5.tar.gz | awk '{ if ($1 == "dcad548be9efbff8737e54082dde5a20cac79f81037eb79586ad68bf403f7c8c") exit 0; else exit 1}'
+tar xfz mgcv_1.8-5.tar.gz
+cd mgcv
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm mgcv -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/Biobase_2.26.0.tar.gz
+sha256sum Biobase_2.26.0.tar.gz | awk '{ if ($1 == "c481a23e57762d969b225d0fa2e72cbe72e0ce037422d89bafcc8b7527561b9c") exit 0; else exit 1}'
+tar xfz Biobase_2.26.0.tar.gz
+cd Biobase
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm Biobase -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/DBI_0.3.1.tar.gz
+sha256sum DBI_0.3.1.tar.gz | awk '{ if ($1 == "1c26535720f146fae8cc9ef6e190619967abf296706a5b5a1e8242cbbb5a4576") exit 0; else exit 1}'
+tar xfz DBI_0.3.1.tar.gz
+cd DBI
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm DBI -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/RSQLite_1.0.0.tar.gz
+sha256sum RSQLite_1.0.0.tar.gz | awk '{ if ($1 == "8e0cfca19afbc61f40c6d86018cd723a7e00f16d0944c4637f07a18fb6d76121") exit 0; else exit 1}'
+tar xfz RSQLite_1.0.0.tar.gz
+cd RSQLite
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm RSQLite -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/AnnotationDbi_1.28.1.tar.gz
+sha256sum AnnotationDbi_1.28.1.tar.gz | awk '{ if ($1 == "214a293286af854001ce46b9d866ea5b3fbc4e6b8383be0952f63491e4f6171c") exit 0; else exit 1}'
+tar xfz AnnotationDbi_1.28.1.tar.gz
+cd AnnotationDbi
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm AnnotationDbi -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/XML_3.98-1.1.tar.gz
+sha256sum XML_3.98-1.1.tar.gz | awk '{ if ($1 == "947318e0e0d272bcd57244999d897d6f7b2624554fdf451f8c3c0461c8313159") exit 0; else exit 1}'
+tar xfz XML_3.98-1.1.tar.gz
+cd XML
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm XML -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/xtable_1.7-4.tar.gz
+sha256sum xtable_1.7-4.tar.gz | awk '{ if ($1 == "47629a31185591be30b13ae3a656fc24360760996975e292f4fa7954c0257dbb") exit 0; else exit 1}'
+tar xfz xtable_1.7-4.tar.gz
+cd xtable
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm xtable -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/annotate_1.44.0.tar.gz
+sha256sum annotate_1.44.0.tar.gz | awk '{ if ($1 == "c191767f5876f8e44a82779749237e91f1e99b3dc6b8e93fe7a8c3e43d91b3ca") exit 0; else exit 1}'
+tar xfz annotate_1.44.0.tar.gz
+cd annotate
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm annotate -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/survival_2.38-1.tar.gz
+sha256sum survival_2.38-1.tar.gz | awk '{ if ($1 == "f5b90925b7f4fd23ba99fb44b713ffe3b6768bfe7cb81037b9f0d615a051004f") exit 0; else exit 1}'
+tar xfz survival_2.38-1.tar.gz
+cd survival
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm survival -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/genefilter_1.48.1.tar.gz
+sha256sum genefilter_1.48.1.tar.gz | awk '{ if ($1 == "31356f8eabecd6b4fe6124edcf9cd6b258481ff124061d709f49cb10f29691f6") exit 0; else exit 1}'
+tar xfz genefilter_1.48.1.tar.gz
+cd genefilter
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm genefilter -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/sva_3.12.0.tar.gz
+sha256sum sva_3.12.0.tar.gz | awk '{ if ($1 == "53afc52973093a8a853cfa5e1ea4c03ca51bb744f8917b520efb8f429d8054f4") exit 0; else exit 1}'
+tar xfz sva_3.12.0.tar.gz
+cd sva
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm sva -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/limma_3.22.6.tar.gz
+sha256sum limma_3.22.6.tar.gz | awk '{ if ($1 == "011131ed104f5be2eed7d7387877e2fe70c1ac72c1052de12cd2284cb61ce2b3") exit 0; else exit 1}'
+tar xfz limma_3.22.6.tar.gz
+cd limma
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm limma -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/zlibbioc_1.12.0.tar.gz
+sha256sum zlibbioc_1.12.0.tar.gz | awk '{ if ($1 == "3a6738f0e2f341c4d511d3e230823c8494e1d65ab528aaa73d4507c7e338fa16") exit 0; else exit 1}'
+tar xfz zlibbioc_1.12.0.tar.gz
+cd zlibbioc
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm zlibbioc -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/Biostrings_2.34.1.tar.gz
+sha256sum Biostrings_2.34.1.tar.gz | awk '{ if ($1 == "b00af8f8eb1dbafa4e0ab25b571fa0a9484376c761b4de949eb6bbb7d41bd0cd") exit 0; else exit 1}'
+tar xfz Biostrings_2.34.1.tar.gz
+cd Biostrings
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm Biostrings -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/bitops_1.0-6.tar.gz
+sha256sum bitops_1.0-6.tar.gz | awk '{ if ($1 == "9b731397b7166dd54941fb0d2eac6df60c7a483b2e790f7eb15b4d7b79c9d69c") exit 0; else exit 1}'
+tar xfz bitops_1.0-6.tar.gz
+cd bitops
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm bitops -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/RCurl_1.95-4.5.tar.gz
+sha256sum RCurl_1.95-4.5.tar.gz | awk '{ if ($1 == "365c582a6da2ef22f8d1bcbbeafe8478ed31de17b0890f740a3e2960620f1382") exit 0; else exit 1}'
+tar xfz RCurl_1.95-4.5.tar.gz
+cd RCurl
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm RCurl -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/Rsamtools_1.18.2.tar.gz
+sha256sum Rsamtools_1.18.2.tar.gz | awk '{ if ($1 == "c845acbc05ff87a12aec1162fe687dda1a043d3e2efa5c08902c006b1ef5f4a6") exit 0; else exit 1}'
+tar xfz Rsamtools_1.18.2.tar.gz
+cd Rsamtools
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm Rsamtools -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/codetools_0.2-10.tar.gz
+sha256sum codetools_0.2-10.tar.gz | awk '{ if ($1 == "329125c0f60092bad43569823fc9cda2a010e3abe82c27030afae23a4970383e") exit 0; else exit 1}'
+tar xfz codetools_0.2-10.tar.gz
+cd codetools
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm codetools -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/iterators_1.0.7.tar.gz
+sha256sum iterators_1.0.7.tar.gz | awk '{ if ($1 == "1bf74e5a5603b2b2d3deecb801ca1796e2b2c3f08c488c497725c5cb205798ff") exit 0; else exit 1}'
+tar xfz iterators_1.0.7.tar.gz
+cd iterators
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm iterators -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/foreach_1.4.2.tar.gz
+sha256sum foreach_1.4.2.tar.gz | awk '{ if ($1 == "d4fd8f090029d9b9168ae415e6ab13ef017f06f1879488a2e0af4bcfd999ff24") exit 0; else exit 1}'
+tar xfz foreach_1.4.2.tar.gz
+cd foreach
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm foreach -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/checkmate_1.5.1.tar.gz
+sha256sum checkmate_1.5.1.tar.gz | awk '{ if ($1 == "0f837be7b92ccc7e2ed6930f342cfaab0213d2df2b82052a4788c8a399bd9c04") exit 0; else exit 1}'
+tar xfz checkmate_1.5.1.tar.gz
+cd checkmate
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm checkmate -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/BBmisc_1.9.tar.gz
+sha256sum BBmisc_1.9.tar.gz | awk '{ if ($1 == "4b7fd5c6c1358a7e4c32c10237aa6f3f5279585afef83b0ffa1b3fc74c5f3006") exit 0; else exit 1}'
+tar xfz BBmisc_1.9.tar.gz
+cd BBmisc
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm BBmisc -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/brew_1.0-6.tar.gz
+sha256sum brew_1.0-6.tar.gz | awk '{ if ($1 == "d70d1a9a01cf4a923b4f11e4374ffd887ad3ff964f35c6f9dc0f29c8d657f0ed") exit 0; else exit 1}'
+tar xfz brew_1.0-6.tar.gz
+cd brew
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm brew -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/digest_0.6.8.tar.gz
+sha256sum digest_0.6.8.tar.gz | awk '{ if ($1 == "3062422c2ca917e52749464d63084a0d3cc061f59083f069280ec26336ce2f55") exit 0; else exit 1}'
+tar xfz digest_0.6.8.tar.gz
+cd digest
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm digest -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/fail_1.2.tar.gz
+sha256sum fail_1.2.tar.gz | awk '{ if ($1 == "9fa037f5bff4ad3821ef1af4fe2986f2900cfa9a69d11f7a800a081cc359fb77") exit 0; else exit 1}'
+tar xfz fail_1.2.tar.gz
+cd fail
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm fail -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/base64enc_0.1-2.tar.gz
+sha256sum base64enc_0.1-2.tar.gz | awk '{ if ($1 == "05fed8fde229fce48f5b9cd34f3bf92f2ca63d6038ba7cb9d37a2904e83e4b34") exit 0; else exit 1}'
+tar xfz base64enc_0.1-2.tar.gz
+cd base64enc
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm base64enc -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/sendmailR_1.2-1.tar.gz
+sha256sum sendmailR_1.2-1.tar.gz | awk '{ if ($1 == "04feb08c6c763d9c58b2db24b1222febe01e28974eac4fe87670be6fb9bff17c") exit 0; else exit 1}'
+tar xfz sendmailR_1.2-1.tar.gz
+cd sendmailR
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm sendmailR -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/stringr_0.6.2.tar.gz
+sha256sum stringr_0.6.2.tar.gz | awk '{ if ($1 == "c3fc9c71d060ad592d2cfc51c36ab2f8e5f8cf9a25dfe42c637447dd416b6737") exit 0; else exit 1}'
+tar xfz stringr_0.6.2.tar.gz
+cd stringr
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm stringr -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/BatchJobs_1.5.tar.gz
+sha256sum BatchJobs_1.5.tar.gz | awk '{ if ($1 == "97583c7ddeb43a5361a9b45eab8b47a166077521c6963507e0155820690e44a9") exit 0; else exit 1}'
+tar xfz BatchJobs_1.5.tar.gz
+cd BatchJobs
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm BatchJobs -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/BiocParallel_1.0.3.tar.gz
+sha256sum BiocParallel_1.0.3.tar.gz | awk '{ if ($1 == "339c7c8285637afafa0f3ca3d429ef002df5da1653490984cd64662f7cabf71f") exit 0; else exit 1}'
+tar xfz BiocParallel_1.0.3.tar.gz
+cd BiocParallel
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm BiocParallel -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/GenomicAlignments_1.2.1.tar.gz
+sha256sum GenomicAlignments_1.2.1.tar.gz | awk '{ if ($1 == "eea049da0427d04a65c0a8b41a41ad1fc679a174e94b0879d5035d676e6ae3f0") exit 0; else exit 1}'
+tar xfz GenomicAlignments_1.2.1.tar.gz
+cd GenomicAlignments
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm GenomicAlignments -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/rtracklayer_1.26.2.tar.gz
+sha256sum rtracklayer_1.26.2.tar.gz | awk '{ if ($1 == "c0284805d84f83f6189dc5a58461ea9ace8ec43dc301b0b317f4c3b493bf8bdb") exit 0; else exit 1}'
+tar xfz rtracklayer_1.26.2.tar.gz
+cd rtracklayer
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm rtracklayer -rf
+
+wget --no-check-certificate https://depot.galaxyproject.org/package/noarch/ballgown_1.0.3.tar.gz
+sha256sum ballgown_1.0.3.tar.gz | awk '{ if ($1 == "f79f0db8d9aa7a3c56feb1034dfd4f8fccb4aa4f962c88aebdd1cac728b19698") exit 0; else exit 1}'
+tar xfz ballgown_1.0.3.tar.gz
+cd ballgown
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm ballgown -rf
+
diff --git a/recipes/bioconductor-ballgown/1.0.3/meta.yaml b/recipes/bioconductor-ballgown/1.0.3/meta.yaml
new file mode 100644
index 0000000000000..c8237c9dc9300
--- /dev/null
+++ b/recipes/bioconductor-ballgown/1.0.3/meta.yaml
@@ -0,0 +1,29 @@
+about:
+  home: https://github.com/alyssafrazee/ballgown
+  license: ''
+  summary: 'Ballgown is a software package designed to facilitate flexible differential
+    expression analysis of RNA-seq data.'
+build:
+  number: 0
+  rpaths:
+  - lib/R/lib/
+  - lib/
+package:
+  name: bioconductor-ballgown
+  version: 1.0.3
+requirements:
+  build:
+    - r ==3.1.2
+    - curl
+  run:
+    - r ==3.1.2
+    - curl
+source:
+  fn: ballgown_1.0.3.tar.gz
+  sha256: f79f0db8d9aa7a3c56feb1034dfd4f8fccb4aa4f962c88aebdd1cac728b19698
+  url: https://depot.galaxyproject.org/package/noarch/ballgown_1.0.3.tar.gz
+test:
+  commands:
+  - sh test.sh ballgown
+  files:
+  - test.sh
diff --git a/recipes/bioconductor-ballgown/1.0.3/test.sh b/recipes/bioconductor-ballgown/1.0.3/test.sh
new file mode 100644
index 0000000000000..15f270541bb9e
--- /dev/null
+++ b/recipes/bioconductor-ballgown/1.0.3/test.sh
@@ -0,0 +1,13 @@
+#!/bin/bash
+
+if [ "$(uname)" == "Darwin" ]; then
+
+    $R -e "library('$1')"
+
+elif [ "$(expr substr $(uname -s) 1 5)" == "Linux" ]; then
+
+    $R -e "library('$1')"
+
+else
+    %R% -e "library('$1')"
+fi
diff --git a/recipes/bioconductor-deseq2/1.8.2gx/build.sh b/recipes/bioconductor-deseq2/1.8.2gx/build.sh
new file mode 100644
index 0000000000000..a96600ff88985
--- /dev/null
+++ b/recipes/bioconductor-deseq2/1.8.2gx/build.sh
@@ -0,0 +1,532 @@
+#!/bin/sh
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/BiocGenerics_0.14.0.tar.gz
+sha256sum BiocGenerics_0.14.0.tar.gz | awk '{ if ($1 == "5e55e0f5c6577935d169f62268dc05a168a2f607b652d44a919cb16caca7952e") exit 0; else exit 1}'
+tar xfz BiocGenerics_0.14.0.tar.gz
+cd BiocGenerics
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm BiocGenerics -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/S4Vectors_0.6.5.tar.gz
+sha256sum S4Vectors_0.6.5.tar.gz | awk '{ if ($1 == "25f82ea9278cfc93b8dadb70fe3b6d114719ea4247c28178d699fde8cacd68f0") exit 0; else exit 1}'
+tar xfz S4Vectors_0.6.5.tar.gz
+cd S4Vectors
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm S4Vectors -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/IRanges_2.2.7.tar.gz
+sha256sum IRanges_2.2.7.tar.gz | awk '{ if ($1 == "0609e1887e17ab75f8fcabb40e7c5995a4033c2c6e764e73bda8d35350561861") exit 0; else exit 1}'
+tar xfz IRanges_2.2.7.tar.gz
+cd IRanges
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm IRanges -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/GenomeInfoDb_1.4.2.tar.gz
+sha256sum GenomeInfoDb_1.4.2.tar.gz | awk '{ if ($1 == "3d4ff22c6a11192ee1e313042ff0da4703b18c72f2247be73a0590769328d05a") exit 0; else exit 1}'
+tar xfz GenomeInfoDb_1.4.2.tar.gz
+cd GenomeInfoDb
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm GenomeInfoDb -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/XVector_0.8.0.tar.gz
+sha256sum XVector_0.8.0.tar.gz | awk '{ if ($1 == "0da74db92148cd3ac9ce1b77d763599bc924700b0df423be1af1eb8fa778009b") exit 0; else exit 1}'
+tar xfz XVector_0.8.0.tar.gz
+cd XVector
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm XVector -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/GenomicRanges_1.20.6.tar.gz
+sha256sum GenomicRanges_1.20.6.tar.gz | awk '{ if ($1 == "9d2bedd17a73864406d0284ddea2d28aef84c7c969b6924d8be2285d96f14e13") exit 0; else exit 1}'
+tar xfz GenomicRanges_1.20.6.tar.gz
+cd GenomicRanges
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm GenomicRanges -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/Rcpp_0.12.0.tar.gz
+sha256sum Rcpp_0.12.0.tar.gz | awk '{ if ($1 == "68782050f5252c4246f1b5b335105eccf4c804d57a0cd41eb63a300f7e0241a0") exit 0; else exit 1}'
+tar xfz Rcpp_0.12.0.tar.gz
+cd Rcpp
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm Rcpp -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/RcppArmadillo_0.5.500.2.0.tar.gz
+sha256sum RcppArmadillo_0.5.500.2.0.tar.gz | awk '{ if ($1 == "f30155fdd4745b4c9a548a25a30b6ae5fe3e3f6cf4136ac485a75c90555934a0") exit 0; else exit 1}'
+tar xfz RcppArmadillo_0.5.500.2.0.tar.gz
+cd RcppArmadillo
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm RcppArmadillo -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/Biobase_2.28.0.tar.gz
+sha256sum Biobase_2.28.0.tar.gz | awk '{ if ($1 == "056b12f15e4164c3ea22bb3462ae2e5d7f391b91e473c014ee51e5460431ffa6") exit 0; else exit 1}'
+tar xfz Biobase_2.28.0.tar.gz
+cd Biobase
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm Biobase -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/lambda.r_1.1.7.tar.gz
+sha256sum lambda.r_1.1.7.tar.gz | awk '{ if ($1 == "8ae36527124752f7af01eb84a55fa77716226b0e76dd03966b83d9583dcfbfd3") exit 0; else exit 1}'
+tar xfz lambda.r_1.1.7.tar.gz
+cd lambda.r
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm lambda.r -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/futile.options_1.0.0.tar.gz
+sha256sum futile.options_1.0.0.tar.gz | awk '{ if ($1 == "ee84ece359397fbb63f145d11af678f5c8618570971e78cc64ac60dc0d14e8c2") exit 0; else exit 1}'
+tar xfz futile.options_1.0.0.tar.gz
+cd futile.options
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm futile.options -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/futile.logger_1.4.1.tar.gz
+sha256sum futile.logger_1.4.1.tar.gz | awk '{ if ($1 == "a1e485e943d288b92a2af3337b333be95d1b51246dd14be9f18ae5ce626894de") exit 0; else exit 1}'
+tar xfz futile.logger_1.4.1.tar.gz
+cd futile.logger
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm futile.logger -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/snow_0.3-13.tar.gz
+sha256sum snow_0.3-13.tar.gz | awk '{ if ($1 == "ceb6af66f8c988a7606c4ba2d7ccf84c14bca6c376f8d9133089296607c14bc1") exit 0; else exit 1}'
+tar xfz snow_0.3-13.tar.gz
+cd snow
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm snow -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/BiocParallel_1.2.20.tar.gz
+sha256sum BiocParallel_1.2.20.tar.gz | awk '{ if ($1 == "b537ff2f7a46982b5897805c40cba63846acfdf855530c3c0c36d57276fb456a") exit 0; else exit 1}'
+tar xfz BiocParallel_1.2.20.tar.gz
+cd BiocParallel
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm BiocParallel -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/DBI_0.3.1.tar.gz
+sha256sum DBI_0.3.1.tar.gz | awk '{ if ($1 == "1c26535720f146fae8cc9ef6e190619967abf296706a5b5a1e8242cbbb5a4576") exit 0; else exit 1}'
+tar xfz DBI_0.3.1.tar.gz
+cd DBI
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm DBI -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/RSQLite_1.0.0.tar.gz
+sha256sum RSQLite_1.0.0.tar.gz | awk '{ if ($1 == "8e0cfca19afbc61f40c6d86018cd723a7e00f16d0944c4637f07a18fb6d76121") exit 0; else exit 1}'
+tar xfz RSQLite_1.0.0.tar.gz
+cd RSQLite
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm RSQLite -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/AnnotationDbi_1.30.1.tar.gz
+sha256sum AnnotationDbi_1.30.1.tar.gz | awk '{ if ($1 == "cefd8d389e71e9b0002cdca78b8d4ae39a950248aaefcf647faaeaa13a2643bb") exit 0; else exit 1}'
+tar xfz AnnotationDbi_1.30.1.tar.gz
+cd AnnotationDbi
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm AnnotationDbi -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/XML_3.98-1.3.tar.gz
+sha256sum XML_3.98-1.3.tar.gz | awk '{ if ($1 == "5e1fb547848b12b9b1a14a1e647891d62dbbebb2a87da28e10e095a1d0f52a49") exit 0; else exit 1}'
+tar xfz XML_3.98-1.3.tar.gz
+cd XML
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm XML -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/xtable_1.7-4.tar.gz
+sha256sum xtable_1.7-4.tar.gz | awk '{ if ($1 == "47629a31185591be30b13ae3a656fc24360760996975e292f4fa7954c0257dbb") exit 0; else exit 1}'
+tar xfz xtable_1.7-4.tar.gz
+cd xtable
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm xtable -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/annotate_1.46.1.tar.gz
+sha256sum annotate_1.46.1.tar.gz | awk '{ if ($1 == "a687835e735c74ce1a19127758626986c6bd495cda5be7b17dfd4318ac5640f7") exit 0; else exit 1}'
+tar xfz annotate_1.46.1.tar.gz
+cd annotate
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm annotate -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/survival_2.38-3.tar.gz
+sha256sum survival_2.38-3.tar.gz | awk '{ if ($1 == "2588ba869471d97a42628611496ba0ce6ade188143f673af41987c7d4a8972c2") exit 0; else exit 1}'
+tar xfz survival_2.38-3.tar.gz
+cd survival
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm survival -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/genefilter_1.50.0.tar.gz
+sha256sum genefilter_1.50.0.tar.gz | awk '{ if ($1 == "3808a8d5d9853c7915c5ba74e992d96470c4d546d7d6cbea03c4e43e5b68df77") exit 0; else exit 1}'
+tar xfz genefilter_1.50.0.tar.gz
+cd genefilter
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm genefilter -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/lattice_0.20-33.tar.gz
+sha256sum lattice_0.20-33.tar.gz | awk '{ if ($1 == "8f46260a14364d945c7b74587cdb54986f36303588dd14010a33d15dba085931") exit 0; else exit 1}'
+tar xfz lattice_0.20-33.tar.gz
+cd lattice
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm lattice -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/locfit_1.5-9.1.tar.gz
+sha256sum locfit_1.5-9.1.tar.gz | awk '{ if ($1 == "f524148fdb29aac3a178618f88718d3d4ac91283014091aa11a01f1c70cd4e51") exit 0; else exit 1}'
+tar xfz locfit_1.5-9.1.tar.gz
+cd locfit
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm locfit -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/RColorBrewer_1.1-2.tar.gz
+sha256sum RColorBrewer_1.1-2.tar.gz | awk '{ if ($1 == "f3e9781e84e114b7a88eb099825936cc5ae7276bbba5af94d35adb1b3ea2ccdd") exit 0; else exit 1}'
+tar xfz RColorBrewer_1.1-2.tar.gz
+cd RColorBrewer
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm RColorBrewer -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/geneplotter_1.46.0.tar.gz
+sha256sum geneplotter_1.46.0.tar.gz | awk '{ if ($1 == "ba930931a39ffbe5aa243b0886844921afdf7028ab904fd50aa4edcb63e1d257") exit 0; else exit 1}'
+tar xfz geneplotter_1.46.0.tar.gz
+cd geneplotter
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm geneplotter -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/plyr_1.8.3.tar.gz
+sha256sum plyr_1.8.3.tar.gz | awk '{ if ($1 == "f31afae9b1998dcf806d9ec82474fac49837082e310a2c6e3ee3cbcb55ff641b") exit 0; else exit 1}'
+tar xfz plyr_1.8.3.tar.gz
+cd plyr
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm plyr -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/digest_0.6.8.tar.gz
+sha256sum digest_0.6.8.tar.gz | awk '{ if ($1 == "3062422c2ca917e52749464d63084a0d3cc061f59083f069280ec26336ce2f55") exit 0; else exit 1}'
+tar xfz digest_0.6.8.tar.gz
+cd digest
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm digest -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/gtable_0.1.2.tar.gz
+sha256sum gtable_0.1.2.tar.gz | awk '{ if ($1 == "b08ba8e62e0ce05e7a4c07ba3ffa67719161db62438b04f14343f8928d74304d") exit 0; else exit 1}'
+tar xfz gtable_0.1.2.tar.gz
+cd gtable
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm gtable -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/stringi_0.5-5.tar.gz
+sha256sum stringi_0.5-5.tar.gz | awk '{ if ($1 == "1cd67b64f287aac9e8fd95dd4a0cab829e0fb7870fd264ede281be0b65ce7ca0") exit 0; else exit 1}'
+tar xfz stringi_0.5-5.tar.gz
+cd stringi
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm stringi -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/magrittr_1.5.tar.gz
+sha256sum magrittr_1.5.tar.gz | awk '{ if ($1 == "05c45943ada9443134caa0ab24db4a962b629f00b755ccf039a2a2a7b2c92ae8") exit 0; else exit 1}'
+tar xfz magrittr_1.5.tar.gz
+cd magrittr
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm magrittr -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/stringr_1.0.0.tar.gz
+sha256sum stringr_1.0.0.tar.gz | awk '{ if ($1 == "f8267db85b83c0fc8904009719c93296934775b0d6890c996ec779ec5336df4a") exit 0; else exit 1}'
+tar xfz stringr_1.0.0.tar.gz
+cd stringr
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm stringr -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/reshape2_1.4.1.tar.gz
+sha256sum reshape2_1.4.1.tar.gz | awk '{ if ($1 == "fbd49f75a5b0b7266378515af98db310cf6c772bf6e68bed01f38ee99b408042") exit 0; else exit 1}'
+tar xfz reshape2_1.4.1.tar.gz
+cd reshape2
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm reshape2 -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/dichromat_2.0-0.tar.gz
+sha256sum dichromat_2.0-0.tar.gz | awk '{ if ($1 == "31151eaf36f70bdc1172da5ff5088ee51cc0a3db4ead59c7c38c25316d580dd1") exit 0; else exit 1}'
+tar xfz dichromat_2.0-0.tar.gz
+cd dichromat
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm dichromat -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/colorspace_1.2-6.tar.gz
+sha256sum colorspace_1.2-6.tar.gz | awk '{ if ($1 == "ba3165c5b906edadcd1c37cad0ef58f780b0af651f3fdeb49fbb2dc825251679") exit 0; else exit 1}'
+tar xfz colorspace_1.2-6.tar.gz
+cd colorspace
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm colorspace -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/munsell_0.4.2.tar.gz
+sha256sum munsell_0.4.2.tar.gz | awk '{ if ($1 == "84e787f58f626c52a1e3fc1201f724835dfa8023358bfed742e7001441f425ae") exit 0; else exit 1}'
+tar xfz munsell_0.4.2.tar.gz
+cd munsell
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm munsell -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/labeling_0.3.tar.gz
+sha256sum labeling_0.3.tar.gz | awk '{ if ($1 == "0d8069eb48e91f6f6d6a9148f4e2dc5026cabead15dd15fc343eff9cf33f538f") exit 0; else exit 1}'
+tar xfz labeling_0.3.tar.gz
+cd labeling
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm labeling -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/scales_0.3.0.tar.gz
+sha256sum scales_0.3.0.tar.gz | awk '{ if ($1 == "f4e1b98e3501b3a27b1a86ecc622a4653aff31c9f93248d7b5d428b03ebe6fce") exit 0; else exit 1}'
+tar xfz scales_0.3.0.tar.gz
+cd scales
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm scales -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/proto_0.3-10.tar.gz
+sha256sum proto_0.3-10.tar.gz | awk '{ if ($1 == "d0d941bfbf247879b3510c8ef3e35853b1fbe83ff3ce952e93d3f8244afcbb0e") exit 0; else exit 1}'
+tar xfz proto_0.3-10.tar.gz
+cd proto
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm proto -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/MASS_7.3-44.tar.gz
+sha256sum MASS_7.3-44.tar.gz | awk '{ if ($1 == "835fe22547222742fa84b8bf77774432abe3dff267932b8b8ed06de554f8e79b") exit 0; else exit 1}'
+tar xfz MASS_7.3-44.tar.gz
+cd MASS
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm MASS -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/ggplot2_1.0.1.tar.gz
+sha256sum ggplot2_1.0.1.tar.gz | awk '{ if ($1 == "40248e6b31307787e44e45d806e7a33095844a9bbe864cc7583dd311b19c241d") exit 0; else exit 1}'
+tar xfz ggplot2_1.0.1.tar.gz
+cd ggplot2
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm ggplot2 -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/Formula_1.2-1.tar.gz
+sha256sum Formula_1.2-1.tar.gz | awk '{ if ($1 == "5db1ef55119b299c9d291e1c5c08e2d51b696303daf4e7295c38ff5fc428360a") exit 0; else exit 1}'
+tar xfz Formula_1.2-1.tar.gz
+cd Formula
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm Formula -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/latticeExtra_0.6-26.tar.gz
+sha256sum latticeExtra_0.6-26.tar.gz | awk '{ if ($1 == "0d1410f279d515a99c102824cc11ad2b024c86ee6af982cb45ea55739e06a09b") exit 0; else exit 1}'
+tar xfz latticeExtra_0.6-26.tar.gz
+cd latticeExtra
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm latticeExtra -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/cluster_2.0.3.tar.gz
+sha256sum cluster_2.0.3.tar.gz | awk '{ if ($1 == "286671702b1ac4c4e918faa8b43cd7fe7561ce02ca5f62823be5f136d6674e0e") exit 0; else exit 1}'
+tar xfz cluster_2.0.3.tar.gz
+cd cluster
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm cluster -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/rpart_4.1-10.tar.gz
+sha256sum rpart_4.1-10.tar.gz | awk '{ if ($1 == "c5ddaed288d38118876a94c7aa5000dce0070b8d736dba12de64a9cb04dc2d85") exit 0; else exit 1}'
+tar xfz rpart_4.1-10.tar.gz
+cd rpart
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm rpart -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/nnet_7.3-11.tar.gz
+sha256sum nnet_7.3-11.tar.gz | awk '{ if ($1 == "979ed2fa4f9ec7c10e76188d41bc48f16fc90c3e59c3102714c85e53455ee54d") exit 0; else exit 1}'
+tar xfz nnet_7.3-11.tar.gz
+cd nnet
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm nnet -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/acepack_1.3-3.3.tar.gz
+sha256sum acepack_1.3-3.3.tar.gz | awk '{ if ($1 == "3e2c3348a9657da2097e2fca18c7ebaebc44f3acd0491216bd5104edfd1e3e8f") exit 0; else exit 1}'
+tar xfz acepack_1.3-3.3.tar.gz
+cd acepack
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm acepack -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/foreign_0.8-66.tar.gz
+sha256sum foreign_0.8-66.tar.gz | awk '{ if ($1 == "d7401e5fcab9ce6e697d3520dbb8475e229c30341c0004c4fa489c82aa4447a4") exit 0; else exit 1}'
+tar xfz foreign_0.8-66.tar.gz
+cd foreign
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm foreign -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/gridExtra_2.0.0.tar.gz
+sha256sum gridExtra_2.0.0.tar.gz | awk '{ if ($1 == "27dc76f75eb08f99a4ab0f629a016250722368528ca6b515edb0b0339acbdea7") exit 0; else exit 1}'
+tar xfz gridExtra_2.0.0.tar.gz
+cd gridExtra
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm gridExtra -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_8_1/Hmisc_3.16-0.tar.gz
+sha256sum Hmisc_3.16-0.tar.gz | awk '{ if ($1 == "4edc3903da63e25d747f34c33abf3e4e9a1f250580bbbab39fb192469738a30d") exit 0; else exit 1}'
+tar xfz Hmisc_3.16-0.tar.gz
+cd Hmisc
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm Hmisc -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2_1_8_2/DESeq2_1.8.2.tar.gz
+sha256sum DESeq2_1.8.2.tar.gz | awk '{ if ($1 == "25fb91b73b033142069fde1413657e7ae8fbb1d801025eec4014a9760d9960ac") exit 0; else exit 1}'
+tar xfz DESeq2_1.8.2.tar.gz
+cd DESeq2
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm DESeq2 -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/gtools_3.4.1.tar.gz
+sha256sum gtools_3.4.1.tar.gz | awk '{ if ($1 == "fa2b8351223369a13f4e922f13e8c836459a9522c775a455afd5e2b18941bb34") exit 0; else exit 1}'
+tar xfz gtools_3.4.1.tar.gz
+cd gtools
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm gtools -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/gdata_2.13.3.tar.gz
+sha256sum gdata_2.13.3.tar.gz | awk '{ if ($1 == "554c973955a5d768359f56556effff6a7acd9e859d98ab13fa010df01fa16516") exit 0; else exit 1}'
+tar xfz gdata_2.13.3.tar.gz
+cd gdata
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm gdata -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/bitops_1.0-6.tar.gz
+sha256sum bitops_1.0-6.tar.gz | awk '{ if ($1 == "9b731397b7166dd54941fb0d2eac6df60c7a483b2e790f7eb15b4d7b79c9d69c") exit 0; else exit 1}'
+tar xfz bitops_1.0-6.tar.gz
+cd bitops
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm bitops -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/caTools_1.17.1.tar.gz
+sha256sum caTools_1.17.1.tar.gz | awk '{ if ($1 == "d32a73febf00930355cc00f3e4e71357412e0f163faae6a4bf7f552cacfe9af4") exit 0; else exit 1}'
+tar xfz caTools_1.17.1.tar.gz
+cd caTools
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm caTools -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/KernSmooth_2.23-13.tar.gz
+sha256sum KernSmooth_2.23-13.tar.gz | awk '{ if ($1 == "3f5fbda9201ea0dab4b5d30a8b857460a929502fc07e3fadc87445c746ce3fe5") exit 0; else exit 1}'
+tar xfz KernSmooth_2.23-13.tar.gz
+cd KernSmooth
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm KernSmooth -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_6_1/gplots_2.14.2.tar.gz
+sha256sum gplots_2.14.2.tar.gz | awk '{ if ($1 == "8cb2ef4309f44eb049f0a8761d3b2aaf636e0ec2323942ec0c27fd8b4912abf9") exit 0; else exit 1}'
+tar xfz gplots_2.14.2.tar.gz
+cd gplots
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm gplots -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2-1_2_10/getopt_1.20.0.tar.gz
+sha256sum getopt_1.20.0.tar.gz | awk '{ if ($1 == "f920baa2a0ef7082155c8b666851af0c77534af8b2ca0cd067e7d56fdf3ec501") exit 0; else exit 1}'
+tar xfz getopt_1.20.0.tar.gz
+cd getopt
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm getopt -rf
+
+wget --no-check-certificate https://github.com/bgruening/download_store/raw/master/DESeq2_1_8_2/rjson_0.2.14.tar.gz
+sha256sum rjson_0.2.14.tar.gz | awk '{ if ($1 == "93d417f4eddb6fb7d679fbabb934b155de3965cf3d3e5ab03af69af5a0123357") exit 0; else exit 1}'
+tar xfz rjson_0.2.14.tar.gz
+cd rjson
+mv DESCRIPTION DESCRIPTION.old
+grep -v '^Priority: ' DESCRIPTION.old > DESCRIPTION
+$R CMD INSTALL --build .
+cd .. && rm rjson -rf
+
diff --git a/recipes/bioconductor-deseq2/1.8.2gx/meta.yaml b/recipes/bioconductor-deseq2/1.8.2gx/meta.yaml
new file mode 100644
index 0000000000000..060f8582c22f1
--- /dev/null
+++ b/recipes/bioconductor-deseq2/1.8.2gx/meta.yaml
@@ -0,0 +1,30 @@
+about:
+  home: http://www.bioconductor.org/packages/release/bioc/html/DESeq2.html
+  license: LGPL
+  summary: 'Estimate variance-mean dependence in count data from high-throughput sequencing
+    assays and test for differential expression based on a model using the negative
+    binomial distribution'
+build:
+  number: 0
+  rpaths:
+  - lib/R/lib/
+  - lib/
+package:
+  name: bioconductor-deseq2
+  version: 1.8.2gx
+requirements:
+  build:
+  - r ==3.2.1
+  - libxml2 ==2.9.1
+  run:
+  - r ==3.2.1
+  - libxml2 ==2.9.1
+source:
+  fn: DESeq2_1.8.2.tar.gz
+  sha256: 25fb91b73b033142069fde1413657e7ae8fbb1d801025eec4014a9760d9960ac
+  url: https://github.com/bgruening/download_store/raw/master/DESeq2_1_8_2/DESeq2_1.8.2.tar.gz
+test:
+  commands:
+  - sh test.sh DESeq2
+  files:
+  - test.sh
diff --git a/recipes/bioconductor-deseq2/1.8.2gx/test.sh b/recipes/bioconductor-deseq2/1.8.2gx/test.sh
new file mode 100644
index 0000000000000..15f270541bb9e
--- /dev/null
+++ b/recipes/bioconductor-deseq2/1.8.2gx/test.sh
@@ -0,0 +1,13 @@
+#!/bin/bash
+
+if [ "$(uname)" == "Darwin" ]; then
+
+    $R -e "library('$1')"
+
+elif [ "$(expr substr $(uname -s) 1 5)" == "Linux" ]; then
+
+    $R -e "library('$1')"
+
+else
+    %R% -e "library('$1')"
+fi