diff --git a/recipes/adam/meta.yaml b/recipes/adam/meta.yaml index d039612f96023..b937198a407ff 100644 --- a/recipes/adam/meta.yaml +++ b/recipes/adam/meta.yaml @@ -11,7 +11,7 @@ package: build: number: 0 - skip: False + noarch: generic source: fn: adam-distribution-spark2_2.11-{{ version }}-bin.tar.gz diff --git a/recipes/adapterremovalfixprefix/meta.yaml b/recipes/adapterremovalfixprefix/meta.yaml index 7b5e840654164..8c38d2291327b 100644 --- a/recipes/adapterremovalfixprefix/meta.yaml +++ b/recipes/adapterremovalfixprefix/meta.yaml @@ -10,7 +10,7 @@ source: sha256: d25a47661ba878d38ddfb227ee34c1b77b9a15c802287524c2753b8edd487fff build: - noarch: python + noarch: generic number: 0 requirements: diff --git a/recipes/asciigenome/meta.yaml b/recipes/asciigenome/meta.yaml index 8f31fc9b62907..7778bd5805428 100644 --- a/recipes/asciigenome/meta.yaml +++ b/recipes/asciigenome/meta.yaml @@ -13,7 +13,8 @@ source: build: number: 0 - + noarch: generic +s requirements: run: - openjdk diff --git a/recipes/astalavista/meta.yaml b/recipes/astalavista/meta.yaml index a3f9e38be757f..cf822a4125a82 100644 --- a/recipes/astalavista/meta.yaml +++ b/recipes/astalavista/meta.yaml @@ -11,7 +11,7 @@ source: build: number: 0 - skip: False + noarch: generic requirements: run: diff --git a/recipes/bbmap/37.10/meta.yaml b/recipes/bbmap/37.10/meta.yaml index 1a95a2b68e0b2..3088022b805b6 100644 --- a/recipes/bbmap/37.10/meta.yaml +++ b/recipes/bbmap/37.10/meta.yaml @@ -9,6 +9,7 @@ about: build: number: 0 + noarch: generic package: name: {{ name|lower }} diff --git a/recipes/bbmap/37.17/meta.yaml b/recipes/bbmap/37.17/meta.yaml index a25041323e803..a2f66d44b462a 100644 --- a/recipes/bbmap/37.17/meta.yaml +++ b/recipes/bbmap/37.17/meta.yaml @@ -9,6 +9,7 @@ about: build: number: 0 + noarch: generic package: name: {{ name|lower }} diff --git a/recipes/bbmap/37.52/meta.yaml b/recipes/bbmap/37.52/meta.yaml index c96f50546b827..c6d7ceba8cde5 100644 --- a/recipes/bbmap/37.52/meta.yaml +++ b/recipes/bbmap/37.52/meta.yaml @@ -9,6 +9,7 @@ about: build: number: 0 + noarch: generic package: name: {{ name|lower }} diff --git a/recipes/bbmap/37.62/meta.yaml b/recipes/bbmap/37.62/meta.yaml index 58ac8f3237f9f..408360d199e9c 100644 --- a/recipes/bbmap/37.62/meta.yaml +++ b/recipes/bbmap/37.62/meta.yaml @@ -9,6 +9,7 @@ about: build: number: 0 + noarch: generic package: name: {{ name|lower }} diff --git a/recipes/bbmap/meta.yaml b/recipes/bbmap/meta.yaml index 339e66c7bb7de..ef4000b0ca027 100644 --- a/recipes/bbmap/meta.yaml +++ b/recipes/bbmap/meta.yaml @@ -9,6 +9,7 @@ about: build: number: 0 + noarch: generic package: name: {{ name|lower }} diff --git a/recipes/bcbio-prioritize/meta.yaml b/recipes/bcbio-prioritize/meta.yaml index b5e60200afd5d..ae1f9b3983fb0 100644 --- a/recipes/bcbio-prioritize/meta.yaml +++ b/recipes/bcbio-prioritize/meta.yaml @@ -9,6 +9,7 @@ source: build: number: 1 + noarch: generic requirements: run: diff --git a/recipes/bcbio-variation-recall/meta.yaml b/recipes/bcbio-variation-recall/meta.yaml index 044ad350d26c2..fbf67b28651d2 100644 --- a/recipes/bcbio-variation-recall/meta.yaml +++ b/recipes/bcbio-variation-recall/meta.yaml @@ -9,7 +9,7 @@ source: build: number: 0 - skip: False + noarch: generic requirements: run: diff --git a/recipes/bcbio-variation/meta.yaml b/recipes/bcbio-variation/meta.yaml index c8b94a76e6f43..3967a4324c0d0 100644 --- a/recipes/bcbio-variation/meta.yaml +++ b/recipes/bcbio-variation/meta.yaml @@ -9,7 +9,7 @@ source: build: number: 2 - skip: False + noarch: generic requirements: run: diff --git a/recipes/beagle/4.0_06Jun17/meta.yaml b/recipes/beagle/4.0_06Jun17/meta.yaml index 8347d0ebaaf0a..dfdd3f5ecf891 100644 --- a/recipes/beagle/4.0_06Jun17/meta.yaml +++ b/recipes/beagle/4.0_06Jun17/meta.yaml @@ -10,7 +10,7 @@ source: build: detect_binary_files_with_prefix: True number: 1 - skip: False + noarch: generic requirements: run: diff --git a/recipes/beagle/meta.yaml b/recipes/beagle/meta.yaml index 2c385a0551ec7..874290e6e3981 100644 --- a/recipes/beagle/meta.yaml +++ b/recipes/beagle/meta.yaml @@ -10,7 +10,7 @@ source: build: detect_binary_files_with_prefix: True number: 0 - skip: False + noarch: generic requirements: run: diff --git a/recipes/biopet-vcfstats/1.0/meta.yaml b/recipes/biopet-vcfstats/1.0/meta.yaml index cece30f691f1c..972b494c0cee7 100644 --- a/recipes/biopet-vcfstats/1.0/meta.yaml +++ b/recipes/biopet-vcfstats/1.0/meta.yaml @@ -11,7 +11,7 @@ source: url: https://github.com/biopet/vcfstats/releases/download/v1.0/VcfStats-assembly-1.0.jar sha256: 97026fcd375a6ed12ccf0d7f953c45529b42c05934fd5c12aa5ca4d9a4bb11f1 build: - noarch: python + noarch: generic number: 0 requirements: run: diff --git a/recipes/biopet-vcfstats/1.1/meta.yaml b/recipes/biopet-vcfstats/1.1/meta.yaml index d1202c9ac8115..d680809d8eab6 100644 --- a/recipes/biopet-vcfstats/1.1/meta.yaml +++ b/recipes/biopet-vcfstats/1.1/meta.yaml @@ -11,7 +11,7 @@ source: url: https://github.com/biopet/vcfstats/releases/download/v1.1/VcfStats-assembly-1.1.jar sha256: f9ad47d5d840a99271d5f70b30046304330f1a1bf6e99756da5ecd2841da4a32 build: - noarch: python + noarch: generic number: 0 requirements: run: diff --git a/recipes/biopet-vcfstats/meta.yaml b/recipes/biopet-vcfstats/meta.yaml index d1202c9ac8115..d680809d8eab6 100644 --- a/recipes/biopet-vcfstats/meta.yaml +++ b/recipes/biopet-vcfstats/meta.yaml @@ -11,7 +11,7 @@ source: url: https://github.com/biopet/vcfstats/releases/download/v1.1/VcfStats-assembly-1.1.jar sha256: f9ad47d5d840a99271d5f70b30046304330f1a1bf6e99756da5ecd2841da4a32 build: - noarch: python + noarch: generic number: 0 requirements: run: diff --git a/recipes/biopet/0.8.0/meta.yaml b/recipes/biopet/0.8.0/meta.yaml index 0a0ecd1a41b40..279535757bfee 100644 --- a/recipes/biopet/0.8.0/meta.yaml +++ b/recipes/biopet/0.8.0/meta.yaml @@ -9,7 +9,7 @@ source: url: https://github.com/biopet/biopet/releases/download/v0.8.0/Biopet-0.8.0-26269612.jar sha256: 95e93cef4232e1bc4623b30b580c66f4bb76c58278e22815e78aee1095ee2f2b build: - noarch: python + noarch: generic number: 0 requirements: host: diff --git a/recipes/biopet/meta.yaml b/recipes/biopet/meta.yaml index 7bf8b2e303413..d8c664160ed4a 100644 --- a/recipes/biopet/meta.yaml +++ b/recipes/biopet/meta.yaml @@ -9,7 +9,7 @@ source: url: https://github.com/biopet/biopet/releases/download/v0.9.0/Biopet-0.9.0-be7838f2.jar sha256: 50fb9ffec164b85bebb6e8d127e0ebf70ad608855011fd4b55276bcbb1970259 build: - noarch: python + noarch: generic number: 0 requirements: host: diff --git a/recipes/bpipe/meta.yaml b/recipes/bpipe/meta.yaml index 30ee12bd8f95c..6c0dc557cf742 100644 --- a/recipes/bpipe/meta.yaml +++ b/recipes/bpipe/meta.yaml @@ -17,6 +17,7 @@ source: build: number: 0 + noarch: generic requirements: run: diff --git a/recipes/break-point-inspector/meta.yaml b/recipes/break-point-inspector/meta.yaml index 91fda4e7a4a8d..c0d5d0900eb32 100644 --- a/recipes/break-point-inspector/meta.yaml +++ b/recipes/break-point-inspector/meta.yaml @@ -12,6 +12,7 @@ source: build: number: 0 + noarch: generic requirements: run: diff --git a/recipes/cannoli/meta.yaml b/recipes/cannoli/meta.yaml index f0a9a0cf73915..5430323d24c6a 100644 --- a/recipes/cannoli/meta.yaml +++ b/recipes/cannoli/meta.yaml @@ -11,7 +11,7 @@ package: build: number: 0 - skip: False + noarch: generic source: fn: cannoli-distribution-spark2_2.11-{{ version }}-bin.tar.gz diff --git a/recipes/cgview/meta.yaml b/recipes/cgview/meta.yaml index e3304fe13e6d2..2fb0635e5233e 100644 --- a/recipes/cgview/meta.yaml +++ b/recipes/cgview/meta.yaml @@ -13,7 +13,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 1 source: diff --git a/recipes/chromhmm/meta.yaml b/recipes/chromhmm/meta.yaml index 4a7dd9883eb5f..241e6c8ac787f 100644 --- a/recipes/chromhmm/meta.yaml +++ b/recipes/chromhmm/meta.yaml @@ -4,6 +4,7 @@ package: build: number: 0 + noarch: generic source: fn: ChromHMM.zip diff --git a/recipes/circularmapper/meta.yaml b/recipes/circularmapper/meta.yaml index 284e039cbe959..f033206c4746e 100644 --- a/recipes/circularmapper/meta.yaml +++ b/recipes/circularmapper/meta.yaml @@ -10,7 +10,7 @@ source: sha256: 2018537eff3cb0fcb531d36dd453d5d445fe13b64bcdd376d634e7857bf1ed0b build: - noarch: python + noarch: generic number: 0 requirements: diff --git a/recipes/clipandmerge/meta.yaml b/recipes/clipandmerge/meta.yaml index 3adf1335b8cd1..4922803b9738c 100644 --- a/recipes/clipandmerge/meta.yaml +++ b/recipes/clipandmerge/meta.yaml @@ -10,7 +10,7 @@ source: md5: 548e403bf12d9709949fd74236205a01 build: - noarch: python + noarch: generic number: 0 requirements: diff --git a/recipes/clove/meta.yaml b/recipes/clove/meta.yaml index d41fd81ac1d16..c8c0cceaa3051 100644 --- a/recipes/clove/meta.yaml +++ b/recipes/clove/meta.yaml @@ -7,7 +7,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/consensusfixer/meta.yaml b/recipes/consensusfixer/meta.yaml index b4c319e1b2f7c..3df44be359a4e 100644 --- a/recipes/consensusfixer/meta.yaml +++ b/recipes/consensusfixer/meta.yaml @@ -14,6 +14,7 @@ package: build: number: 0 + noarch: generic source: url: https://github.com/cbg-ethz/{{ name }}/releases/download/{{ version }}/{{ name }}.jar diff --git a/recipes/cramtools/meta.yaml b/recipes/cramtools/meta.yaml index 4764a7069dc29..4de72f215e13f 100644 --- a/recipes/cramtools/meta.yaml +++ b/recipes/cramtools/meta.yaml @@ -10,7 +10,7 @@ source: build: number: 1 - skip: False + noarch: generic requirements: run: diff --git a/recipes/crisper_recognition_tool/meta.yaml b/recipes/crisper_recognition_tool/meta.yaml index 32546beb1eb27..c4be235d2f9f8 100644 --- a/recipes/crisper_recognition_tool/meta.yaml +++ b/recipes/crisper_recognition_tool/meta.yaml @@ -11,7 +11,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/curlywhirly/meta.yaml b/recipes/curlywhirly/meta.yaml index dc78642f25100..26738f4466bb9 100644 --- a/recipes/curlywhirly/meta.yaml +++ b/recipes/curlywhirly/meta.yaml @@ -12,6 +12,7 @@ source: build: number: 0 + noarch: generic requirements: build: diff --git a/recipes/damageprofiler/meta.yaml b/recipes/damageprofiler/meta.yaml index 04821b959da01..fc8f265cefa33 100644 --- a/recipes/damageprofiler/meta.yaml +++ b/recipes/damageprofiler/meta.yaml @@ -10,7 +10,7 @@ source: md5: ef5d26e6d2de9dda5c355a94bd68d942 build: - noarch: python + noarch: generic number: 0 requirements: diff --git a/recipes/dedup/meta.yaml b/recipes/dedup/meta.yaml index 7c64c22f1aa80..ad13006560ef2 100644 --- a/recipes/dedup/meta.yaml +++ b/recipes/dedup/meta.yaml @@ -10,7 +10,7 @@ source: md5: c4993f32f09dfe618cdbffef3c92a564 build: - noarch: python + noarch: generic number: 0 requirements: diff --git a/recipes/dia_umpire/meta.yaml b/recipes/dia_umpire/meta.yaml index 43b8ca4505a69..d41f237acb01c 100644 --- a/recipes/dia_umpire/meta.yaml +++ b/recipes/dia_umpire/meta.yaml @@ -5,7 +5,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/dsh-bio/meta.yaml b/recipes/dsh-bio/meta.yaml index 0c8cda94f2b7f..b30b39e3f426e 100644 --- a/recipes/dsh-bio/meta.yaml +++ b/recipes/dsh-bio/meta.yaml @@ -12,7 +12,7 @@ package: build: number: 0 - skip: False + noarch: generic source: url: https://search.maven.org/remotecontent?filepath=org/dishevelled/dsh-bio-tools/{{ version }}/dsh-bio-tools-{{ version }}-bin.tar.gz diff --git a/recipes/effectivet3/meta.yaml b/recipes/effectivet3/meta.yaml index 35b0476863f1d..5893414c9d119 100644 --- a/recipes/effectivet3/meta.yaml +++ b/recipes/effectivet3/meta.yaml @@ -3,7 +3,7 @@ package: version: 1.0.1 build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/embl-validator/meta.yaml b/recipes/embl-validator/meta.yaml index 74a75212ac88f..7b906e0695c85 100644 --- a/recipes/embl-validator/meta.yaml +++ b/recipes/embl-validator/meta.yaml @@ -13,7 +13,7 @@ source: sha256: {{ sha256hash }} build: - noarch: python + noarch: generic number: 0 requirements: diff --git a/recipes/fastqc/0.11.2/meta.yaml b/recipes/fastqc/0.11.2/meta.yaml index a264a68165dc0..a4e0c62e3627c 100644 --- a/recipes/fastqc/0.11.2/meta.yaml +++ b/recipes/fastqc/0.11.2/meta.yaml @@ -7,7 +7,7 @@ about: build: detect_binary_files_with_prefix: true number: 0 - skip: False + noarch: generic requirements: run: diff --git a/recipes/gatk-framework/meta.yaml b/recipes/gatk-framework/meta.yaml index 4c66a34f6a6af..394d267cf70b5 100644 --- a/recipes/gatk-framework/meta.yaml +++ b/recipes/gatk-framework/meta.yaml @@ -9,7 +9,7 @@ package: build: number: 4 - skip: False + noarch: generic source: fn: gatk-framework-3.6-24.tar.gz diff --git a/recipes/gatk/meta.yaml b/recipes/gatk/meta.yaml index 30fddd3e69c49..814f80bad5b97 100644 --- a/recipes/gatk/meta.yaml +++ b/recipes/gatk/meta.yaml @@ -8,7 +8,7 @@ package: version: '3.8' build: - noarch: python + noarch: generic number: 4 skip: False diff --git a/recipes/gatk4/4.0.3.0/meta.yaml b/recipes/gatk4/4.0.3.0/meta.yaml index deee010662f8f..6a6942eb1b369 100644 --- a/recipes/gatk4/4.0.3.0/meta.yaml +++ b/recipes/gatk4/4.0.3.0/meta.yaml @@ -10,7 +10,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: @@ -22,8 +22,7 @@ requirements: host: run: - openjdk >=8,<9 - # constrain python to prevent multiple builds with conda-build 2.1.x - - python >0 + - python test: commands: diff --git a/recipes/gatk4/meta.yaml b/recipes/gatk4/meta.yaml index 37193d9b95447..e26ef97d8f9bd 100644 --- a/recipes/gatk4/meta.yaml +++ b/recipes/gatk4/meta.yaml @@ -10,7 +10,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: @@ -22,8 +22,7 @@ requirements: host: run: - openjdk >=8,<9 - # constrain python to prevent multiple builds with conda-build 2.1.x - - python >0 + - python test: commands: diff --git a/recipes/igv/meta.yaml b/recipes/igv/meta.yaml index 184e39b5078f9..1c02b8de1efda 100644 --- a/recipes/igv/meta.yaml +++ b/recipes/igv/meta.yaml @@ -12,6 +12,7 @@ source: build: number: 0 + noarch: generic requirements: run: diff --git a/recipes/igvtools/meta.yaml b/recipes/igvtools/meta.yaml index 5d51ef7c5b7d4..945953edae50a 100644 --- a/recipes/igvtools/meta.yaml +++ b/recipes/igvtools/meta.yaml @@ -11,6 +11,7 @@ source: build: number: 0 + noarch: generic requirements: run: diff --git a/recipes/indelfixer/meta.yaml b/recipes/indelfixer/meta.yaml index faa5024f2c4d8..5c86245367b0a 100644 --- a/recipes/indelfixer/meta.yaml +++ b/recipes/indelfixer/meta.yaml @@ -9,6 +9,7 @@ package: build: number: 0 + noarch: generic source: fn: InDelFixer.jar diff --git a/recipes/jannovar-cli/meta.yaml b/recipes/jannovar-cli/meta.yaml index c22a72b31a0b8..37a952fe07d82 100644 --- a/recipes/jannovar-cli/meta.yaml +++ b/recipes/jannovar-cli/meta.yaml @@ -12,6 +12,7 @@ source: build: number: 0 + noarch: generic requirements: run: diff --git a/recipes/je-suite/2.0.RC/meta.yaml b/recipes/je-suite/2.0.RC/meta.yaml index ca71cc8aed33d..e1881347fe6bc 100644 --- a/recipes/je-suite/2.0.RC/meta.yaml +++ b/recipes/je-suite/2.0.RC/meta.yaml @@ -14,6 +14,7 @@ package: build: number: 0 + noarch: generic source: fn: {{ name }}_{{ version }}.tar.gz diff --git a/recipes/je-suite/meta.yaml b/recipes/je-suite/meta.yaml index 254b8d4702bd4..0b34e290506c8 100644 --- a/recipes/je-suite/meta.yaml +++ b/recipes/je-suite/meta.yaml @@ -14,6 +14,7 @@ package: build: number: 0 + noarch: generic source: fn: {{ name }}_{{ version }}.tar.gz @@ -31,8 +32,8 @@ test: extra: notes: | - Je is Java program that comes with a wrapper shell script. - By default "-Xmx4G -Xms256m" is set in the wrapper. If you want to overwrite it you can - specify these values directly after your binaries. If you have _JAVA_OPTIONS - set globally this will take precedence. - For example run it with "je -Xms512m -Xmx1g" + Je is Java program that comes with a wrapper shell script. + By default "-Xmx4G -Xms256m" is set in the wrapper. If you want to overwrite it you can + specify these values directly after your binaries. If you have _JAVA_OPTIONS + set globally this will take precedence. + For example run it with "je -Xms512m -Xmx1g" \ No newline at end of file diff --git a/recipes/lorikeet/meta.yaml b/recipes/lorikeet/meta.yaml index 6f86de2606f85..3279979480fac 100644 --- a/recipes/lorikeet/meta.yaml +++ b/recipes/lorikeet/meta.yaml @@ -13,6 +13,7 @@ source: build: number: 0 + noarch: generic requirements: build: diff --git a/recipes/metacherchant/meta.yaml b/recipes/metacherchant/meta.yaml index 286987c5b06a6..90f5b39c99ee9 100644 --- a/recipes/metacherchant/meta.yaml +++ b/recipes/metacherchant/meta.yaml @@ -9,6 +9,7 @@ about: build: number: 0 + noarch: generic package: name: {{ name| lower }} diff --git a/recipes/metfrag/2.3.1/meta.yaml b/recipes/metfrag/2.3.1/meta.yaml index 88be232b7358b..d641c0f8d047e 100644 --- a/recipes/metfrag/2.3.1/meta.yaml +++ b/recipes/metfrag/2.3.1/meta.yaml @@ -14,6 +14,7 @@ source: build: number: 0 + noarch: generic requirements: run: diff --git a/recipes/mgf-formatter/meta.yaml b/recipes/mgf-formatter/meta.yaml index afb30c65de923..93ef0bb87e44d 100644 --- a/recipes/mgf-formatter/meta.yaml +++ b/recipes/mgf-formatter/meta.yaml @@ -3,7 +3,7 @@ package: version: 1.0.0 build: - noarch: python + noarch: generic number: 1 source: diff --git a/recipes/mhap/meta.yaml b/recipes/mhap/meta.yaml index 4798e5b982819..5764b2c24fe41 100644 --- a/recipes/mhap/meta.yaml +++ b/recipes/mhap/meta.yaml @@ -9,7 +9,7 @@ source: md5: fcc79d0b7483d55d3d4d744c860bbceb build: - noarch: python + noarch: generic detect_binary_files_with_prefix: True number: 0 skip: False diff --git a/recipes/minced/0.2.0/meta.yaml b/recipes/minced/0.2.0/meta.yaml index 99a4cedea0b40..1cf5f9cb8d629 100644 --- a/recipes/minced/0.2.0/meta.yaml +++ b/recipes/minced/0.2.0/meta.yaml @@ -13,6 +13,7 @@ source: build: number: 1 + noarch: generic requirements: build: diff --git a/recipes/minced/meta.yaml b/recipes/minced/meta.yaml index 2962716aa41f3..f55056480433e 100644 --- a/recipes/minced/meta.yaml +++ b/recipes/minced/meta.yaml @@ -13,6 +13,7 @@ source: build: number: 0 + noarch: generic requirements: build: diff --git a/recipes/mixcr/meta.yaml b/recipes/mixcr/meta.yaml index 017aaad530e25..bf18aa7a0b0ff 100644 --- a/recipes/mixcr/meta.yaml +++ b/recipes/mixcr/meta.yaml @@ -2,6 +2,7 @@ build: number: 0 + noarch: generic package: name: mixcr diff --git a/recipes/mobster/meta.yaml b/recipes/mobster/meta.yaml index 674ebfec8d100..bdd5ebafd4419 100644 --- a/recipes/mobster/meta.yaml +++ b/recipes/mobster/meta.yaml @@ -15,7 +15,7 @@ source: sha256: eddd72aaee436f0c6256a50500811bef4933211dfd09b935ee96db748e25153a build: - noarch: python + noarch: generic number: 0 requirements: diff --git a/recipes/msgf_plus/meta.yaml b/recipes/msgf_plus/meta.yaml index 4cea7aafac4e1..389d77370f904 100644 --- a/recipes/msgf_plus/meta.yaml +++ b/recipes/msgf_plus/meta.yaml @@ -3,7 +3,7 @@ package: version: 2017.07.21 build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/mz_to_sqlite/1.2.0/meta.yaml b/recipes/mz_to_sqlite/1.2.0/meta.yaml index 8df9314ee7409..ff9d77b15bcbe 100644 --- a/recipes/mz_to_sqlite/1.2.0/meta.yaml +++ b/recipes/mz_to_sqlite/1.2.0/meta.yaml @@ -15,7 +15,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/mz_to_sqlite/meta.yaml b/recipes/mz_to_sqlite/meta.yaml index e5056548cdd33..93a98ac503961 100644 --- a/recipes/mz_to_sqlite/meta.yaml +++ b/recipes/mz_to_sqlite/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/mztosqlite/meta.yaml b/recipes/mztosqlite/meta.yaml index 0ca6c3a4de5ac..34709dd16e4dd 100644 --- a/recipes/mztosqlite/meta.yaml +++ b/recipes/mztosqlite/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/nextflow/meta.yaml b/recipes/nextflow/meta.yaml index 2e00d29a3a551..71891153b3ba8 100644 --- a/recipes/nextflow/meta.yaml +++ b/recipes/nextflow/meta.yaml @@ -6,6 +6,7 @@ package: build: number: 0 + noarch: generic source: fn: nextflow diff --git a/recipes/np-likeness-scorer/meta.yaml b/recipes/np-likeness-scorer/meta.yaml index 4aa6cc2883aae..c5df87d6db5fa 100644 --- a/recipes/np-likeness-scorer/meta.yaml +++ b/recipes/np-likeness-scorer/meta.yaml @@ -12,7 +12,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/oncofuse/meta.yaml b/recipes/oncofuse/meta.yaml index d3df9dbefd4f3..540a6cf62ecff 100644 --- a/recipes/oncofuse/meta.yaml +++ b/recipes/oncofuse/meta.yaml @@ -13,7 +13,7 @@ source: build: number: 0 - skip: False + noarch: generic requirements: run: diff --git a/recipes/openmg/meta.yaml b/recipes/openmg/meta.yaml index 1681c039e7c31..92edaf8e656bb 100644 --- a/recipes/openmg/meta.yaml +++ b/recipes/openmg/meta.yaml @@ -7,6 +7,8 @@ package: version: 0.1 build: number: 1 + noarch: generic + source: fn: OMG.jar url: http://downloads.sourceforge.net/project/openmg/OMG.jar diff --git a/recipes/paralyzer/meta.yaml b/recipes/paralyzer/meta.yaml index f70f673a76d6a..feab1c0b8b1eb 100644 --- a/recipes/paralyzer/meta.yaml +++ b/recipes/paralyzer/meta.yaml @@ -9,6 +9,7 @@ source: build: number: 1 + noarch: generic requirements: build: diff --git a/recipes/peptide-shaker/1.14.6/meta.yaml b/recipes/peptide-shaker/1.14.6/meta.yaml index 61550db4ec46a..99a428bee6ae0 100644 --- a/recipes/peptide-shaker/1.14.6/meta.yaml +++ b/recipes/peptide-shaker/1.14.6/meta.yaml @@ -16,7 +16,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/peptide-shaker/1.15.0/meta.yaml b/recipes/peptide-shaker/1.15.0/meta.yaml index 6c1da0e88dce7..c4f2cbcef9002 100644 --- a/recipes/peptide-shaker/1.15.0/meta.yaml +++ b/recipes/peptide-shaker/1.15.0/meta.yaml @@ -16,7 +16,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/peptide-shaker/1.15.1/meta.yaml b/recipes/peptide-shaker/1.15.1/meta.yaml index fcd519da8e24e..740a88cb999a3 100644 --- a/recipes/peptide-shaker/1.15.1/meta.yaml +++ b/recipes/peptide-shaker/1.15.1/meta.yaml @@ -16,7 +16,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/peptide-shaker/1.16.0/meta.yaml b/recipes/peptide-shaker/1.16.0/meta.yaml index 20d68ccdb8855..95327fa404165 100644 --- a/recipes/peptide-shaker/1.16.0/meta.yaml +++ b/recipes/peptide-shaker/1.16.0/meta.yaml @@ -16,7 +16,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/peptide-shaker/1.16.13/meta.yaml b/recipes/peptide-shaker/1.16.13/meta.yaml index f4b6c0266f7e1..83580da6cfbd5 100644 --- a/recipes/peptide-shaker/1.16.13/meta.yaml +++ b/recipes/peptide-shaker/1.16.13/meta.yaml @@ -16,7 +16,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/peptide-shaker/1.16.15/meta.yaml b/recipes/peptide-shaker/1.16.15/meta.yaml index a5bd3d571c633..8a19fa4402889 100644 --- a/recipes/peptide-shaker/1.16.15/meta.yaml +++ b/recipes/peptide-shaker/1.16.15/meta.yaml @@ -16,7 +16,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/peptide-shaker/1.16.16/meta.yaml b/recipes/peptide-shaker/1.16.16/meta.yaml index 8974c8f0855e1..27e6322cb0fb8 100644 --- a/recipes/peptide-shaker/1.16.16/meta.yaml +++ b/recipes/peptide-shaker/1.16.16/meta.yaml @@ -16,7 +16,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/peptide-shaker/1.16.3/meta.yaml b/recipes/peptide-shaker/1.16.3/meta.yaml index 03513453c286e..cb947b5b36028 100644 --- a/recipes/peptide-shaker/1.16.3/meta.yaml +++ b/recipes/peptide-shaker/1.16.3/meta.yaml @@ -16,7 +16,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/peptide-shaker/1.16.4/meta.yaml b/recipes/peptide-shaker/1.16.4/meta.yaml index a6d25c4493a8e..5d8f8a7bbe530 100644 --- a/recipes/peptide-shaker/1.16.4/meta.yaml +++ b/recipes/peptide-shaker/1.16.4/meta.yaml @@ -16,7 +16,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/peptide-shaker/meta.yaml b/recipes/peptide-shaker/meta.yaml index 4aacb76127e3a..bab05d28b7448 100644 --- a/recipes/peptide-shaker/meta.yaml +++ b/recipes/peptide-shaker/meta.yaml @@ -16,7 +16,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/picard/1.56/meta.yaml b/recipes/picard/1.56/meta.yaml index 5b6cfdbcb5ae2..9025c76708d32 100644 --- a/recipes/picard/1.56/meta.yaml +++ b/recipes/picard/1.56/meta.yaml @@ -11,7 +11,7 @@ source: build: number: 0 - skip: False + noarch: generic requirements: build: diff --git a/recipes/picard/2.13.0/meta.yaml b/recipes/picard/2.13.0/meta.yaml index 1e306c87d31d0..ca581cbcd7294 100644 --- a/recipes/picard/2.13.0/meta.yaml +++ b/recipes/picard/2.13.0/meta.yaml @@ -10,7 +10,7 @@ source: sha256: d7ab75fe5fca128725bb06dd097a24b9898778eb3091e8fa0a0264291cd4f37b build: - noarch: python + noarch: generic number: 0 skip: False diff --git a/recipes/picard/2.9.2/meta.yaml b/recipes/picard/2.9.2/meta.yaml index 86c3886691522..4c3bc77113df3 100644 --- a/recipes/picard/2.9.2/meta.yaml +++ b/recipes/picard/2.9.2/meta.yaml @@ -8,7 +8,7 @@ source: md5: 0449279a6a89830917e8bcef3a976ef7 build: - noarch: python + noarch: generic number: 1 skip: False diff --git a/recipes/picard/meta.yaml b/recipes/picard/meta.yaml index 13937aab8b57d..aa3b7d7c46fa6 100644 --- a/recipes/picard/meta.yaml +++ b/recipes/picard/meta.yaml @@ -10,7 +10,7 @@ source: sha256: 21385476cf0f4fa36484b67f6fac3a2514abbcc2a4e7a12582923fc1b8c561d2 build: - noarch: python + noarch: generic number: 0 skip: False diff --git a/recipes/pilon/meta.yaml b/recipes/pilon/meta.yaml index 017ce98c31d3e..6387e3a98c0cd 100644 --- a/recipes/pilon/meta.yaml +++ b/recipes/pilon/meta.yaml @@ -10,7 +10,7 @@ source: md5: 3c45568dc1b878a9a0316410ec62ab04 build: - noarch: python + noarch: generic number: 0 requirements: diff --git a/recipes/qorts/meta.yaml b/recipes/qorts/meta.yaml index 38b9976c7e1d9..8f3eddb79c448 100644 --- a/recipes/qorts/meta.yaml +++ b/recipes/qorts/meta.yaml @@ -7,7 +7,7 @@ package: version: 1.3.0 build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/qsignature/meta.yaml b/recipes/qsignature/meta.yaml index e728fa336a5c8..6e8fa6052ed47 100644 --- a/recipes/qsignature/meta.yaml +++ b/recipes/qsignature/meta.yaml @@ -10,6 +10,7 @@ source: build: number: 3 skip: False + noarch: generic requirements: run: diff --git a/recipes/qualimap/meta.yaml b/recipes/qualimap/meta.yaml index d1726b1dd3a71..6d94d088710c6 100644 --- a/recipes/qualimap/meta.yaml +++ b/recipes/qualimap/meta.yaml @@ -10,6 +10,7 @@ source: build: number: 2 skip: False + noarch: generic requirements: run: diff --git a/recipes/quast/meta.yaml b/recipes/quast/meta.yaml index 85155b87066c5..a214efe0e6c54 100644 --- a/recipes/quast/meta.yaml +++ b/recipes/quast/meta.yaml @@ -10,6 +10,7 @@ build: number: 1 # skip Python 3 builds due to test failures in vendored libs skip: True # [py3k] + noarch: generic source: fn: {{ name|lower }}-{{ version }}.tar.gz diff --git a/recipes/rabix-bunny/meta.yaml b/recipes/rabix-bunny/meta.yaml index 11f00505cd24a..cf89a839dae4d 100644 --- a/recipes/rabix-bunny/meta.yaml +++ b/recipes/rabix-bunny/meta.yaml @@ -13,6 +13,7 @@ package: build: number: 5 skip: False + noarch: generic source: fn: rabix-{{ version }}.tar.gz diff --git a/recipes/rambo-k/meta.yaml b/recipes/rambo-k/meta.yaml index 852ac01a1aca7..8f04659f47b31 100644 --- a/recipes/rambo-k/meta.yaml +++ b/recipes/rambo-k/meta.yaml @@ -4,6 +4,7 @@ package: build: number: 0 + noarch: generic source: url: https://gitlab.com/SimonHTausch/RAMBO-K/uploads/4a3322dc19285433fc43cdb06cbd9a9d/RAMBO-K-v1.21-303bc3d213aa6333be42d2a1e7f2628b792e61cc.zip diff --git a/recipes/rdp-readseq/meta.yaml b/recipes/rdp-readseq/meta.yaml index 0431d5f3221b1..6545e0e123055 100644 --- a/recipes/rdp-readseq/meta.yaml +++ b/recipes/rdp-readseq/meta.yaml @@ -7,7 +7,7 @@ package: build: number: 0 - skip: False + noarch: generic source: fn: {{ version }}.tar.gz diff --git a/recipes/rdptools/meta.yaml b/recipes/rdptools/meta.yaml index 4c9a441c86461..d39e3e4bf2d1d 100644 --- a/recipes/rdptools/meta.yaml +++ b/recipes/rdptools/meta.yaml @@ -6,7 +6,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 skip: False diff --git a/recipes/readseq/meta.yaml b/recipes/readseq/meta.yaml index 9c60f624ceca3..30929b0b8e183 100644 --- a/recipes/readseq/meta.yaml +++ b/recipes/readseq/meta.yaml @@ -7,7 +7,7 @@ package: build: number: 0 - skip: False + noarch: generic source: fn: {{ name }}.jar diff --git a/recipes/realphy/meta.yaml b/recipes/realphy/meta.yaml index 994b7b95d7069..f260dd07e50e6 100644 --- a/recipes/realphy/meta.yaml +++ b/recipes/realphy/meta.yaml @@ -13,6 +13,7 @@ source: build: number: 0 + noarch: generic requirements: run: diff --git a/recipes/rna-seqc/meta.yaml b/recipes/rna-seqc/meta.yaml index f4039274f8ab0..91f0c0d31d7ee 100644 --- a/recipes/rna-seqc/meta.yaml +++ b/recipes/rna-seqc/meta.yaml @@ -11,6 +11,7 @@ package: build: number: 1 + noarch: generic requirements: run: diff --git a/recipes/rtg-tools/meta.yaml b/recipes/rtg-tools/meta.yaml index 4aea94e243b32..0d0a1180e0773 100644 --- a/recipes/rtg-tools/meta.yaml +++ b/recipes/rtg-tools/meta.yaml @@ -10,7 +10,7 @@ source: build: number: 0 - skip: False + noarch: generic requirements: run: diff --git a/recipes/searchgui/meta.yaml b/recipes/searchgui/meta.yaml index aa3abdc69b074..d966a734cf648 100644 --- a/recipes/searchgui/meta.yaml +++ b/recipes/searchgui/meta.yaml @@ -12,7 +12,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 source: diff --git a/recipes/snpeff/meta.yaml b/recipes/snpeff/meta.yaml index 00de7876ac0f1..cce56c7341682 100644 --- a/recipes/snpeff/meta.yaml +++ b/recipes/snpeff/meta.yaml @@ -14,7 +14,7 @@ package: build: number: 0 - skip: False + noarch: generic source: fn: snpEff_{{ snpeff_ver }}_core.zip diff --git a/recipes/snpsift/meta.yaml b/recipes/snpsift/meta.yaml index d8d506730d16c..06bc672af837b 100644 --- a/recipes/snpsift/meta.yaml +++ b/recipes/snpsift/meta.yaml @@ -13,7 +13,7 @@ package: version: {{ version }} build: - noarch: python + noarch: generic number: 0 skip: False diff --git a/recipes/strudel/meta.yaml b/recipes/strudel/meta.yaml index 0534c9305fa51..fef72f859edff 100644 --- a/recipes/strudel/meta.yaml +++ b/recipes/strudel/meta.yaml @@ -13,6 +13,7 @@ source: build: number: {{ build }} + noarch: generic requirements: build: diff --git a/recipes/tablet/meta.yaml b/recipes/tablet/meta.yaml index 9019e33f5250d..e2cff67cdb5e9 100644 --- a/recipes/tablet/meta.yaml +++ b/recipes/tablet/meta.yaml @@ -13,6 +13,7 @@ source: build: number: {{ build }} + noarch: generic requirements: build: diff --git a/recipes/tracer/meta.yaml b/recipes/tracer/meta.yaml index 0a1797add8d54..c31443b3eeabd 100644 --- a/recipes/tracer/meta.yaml +++ b/recipes/tracer/meta.yaml @@ -15,6 +15,7 @@ package: build: number: {{ build }} + noarch: generic source: fn: Tracer_v1.7.0.tgz diff --git a/recipes/trimmomatic/0.33/meta.yaml b/recipes/trimmomatic/0.33/meta.yaml index 74237bad4a141..ee7c184c3234b 100644 --- a/recipes/trimmomatic/0.33/meta.yaml +++ b/recipes/trimmomatic/0.33/meta.yaml @@ -9,7 +9,7 @@ package: build: number: 0 - skip: False + noarch: generic source: fn: Trimmomatic-0.33.zip diff --git a/recipes/trimmomatic/meta.yaml b/recipes/trimmomatic/meta.yaml index f801691760617..d99aeef205373 100644 --- a/recipes/trimmomatic/meta.yaml +++ b/recipes/trimmomatic/meta.yaml @@ -9,7 +9,7 @@ package: build: number: 5 - skip: False + noarch: generic source: fn: Trimmomatic-0.36.zip diff --git a/recipes/validate-fasta-database/meta.yaml b/recipes/validate-fasta-database/meta.yaml index 37822a5722472..c5f5898e2494e 100644 --- a/recipes/validate-fasta-database/meta.yaml +++ b/recipes/validate-fasta-database/meta.yaml @@ -2,6 +2,7 @@ build: number: 0 + noarch: generic package: name: validate-fasta-database diff --git a/recipes/vardict-java/meta.yaml b/recipes/vardict-java/meta.yaml index d13f93d785f0b..a90e50d93aa40 100644 --- a/recipes/vardict-java/meta.yaml +++ b/recipes/vardict-java/meta.yaml @@ -11,6 +11,7 @@ source: build: number: 0 + noarch: generic requirements: run: diff --git a/recipes/varscan/2.4.2/meta.yaml b/recipes/varscan/2.4.2/meta.yaml index bf22550b9e855..0a05ade5b4fcc 100644 --- a/recipes/varscan/2.4.2/meta.yaml +++ b/recipes/varscan/2.4.2/meta.yaml @@ -7,6 +7,8 @@ package: version: 2.4.2 build: number: 1 + noarch: generic + source: fn: VarScan-2.4.2.jar url: https://github.com/dkoboldt/varscan/raw/master/VarScan.v2.4.2.jar @@ -15,6 +17,7 @@ requirements: build: run: - openjdk + test: commands: - varscan mpileup2cns --help diff --git a/recipes/varscan/meta.yaml b/recipes/varscan/meta.yaml index 12d5c39f385f0..8cdcb238954ac 100644 --- a/recipes/varscan/meta.yaml +++ b/recipes/varscan/meta.yaml @@ -9,16 +9,21 @@ about: home: http://dkoboldt.github.io/varscan/ license: The Non-Profit Open Software License version 3.0 (NPOSL-3.0) summary: variant detection in massively parallel sequencing data + build: number: 0 + noarch: generic + source: fn: VarScan-{{ version }}.jar url: https://github.com/dkoboldt/varscan/raw/master/VarScan.v{{ version }}.jar sha256: {{ sha256hash }} + requirements: build: run: - openjdk + test: commands: - varscan mpileup2cns --help diff --git a/recipes/vcf2genome/meta.yaml b/recipes/vcf2genome/meta.yaml index d3e914a425d68..133ec34160826 100644 --- a/recipes/vcf2genome/meta.yaml +++ b/recipes/vcf2genome/meta.yaml @@ -10,7 +10,7 @@ source: md5: d7d3de374dc18e253236b1b46443fec1 build: - noarch: python + noarch: generic number: 0 requirements: