-
Notifications
You must be signed in to change notification settings - Fork 0
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
1 parent
6ba2a2c
commit a6a47d7
Showing
1 changed file
with
120 additions
and
120 deletions.
There are no files selected for viewing
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -1,128 +1,128 @@ | ||
| --- | ||
| title: "Democratizing knowledge representation with BioCypher" | ||
| date: null # Defaults to date generated, but can specify like '2022-10-31'. | ||
| date: null # Defaults to date generated, but can specify like '2022-10-31'. | ||
| keywords: | ||
| - markdown | ||
| - publishing | ||
| - manubot | ||
| lang: en-US | ||
| authors: | ||
| - github: slobentanzer | ||
| name: Sebastian Lobentanzer | ||
| initials: SL | ||
| orcid: 0000-0003-3399-6695 | ||
| twitter: slobentanzer | ||
| email: sebastian.lobentanzer@gmail.com | ||
| affiliations: | ||
| - Heidelberg University, Faculty of Medicine and Heidelberg University Hospital, Institute for Computational Biomedicine, Heidelberg, Germany | ||
| corresponding: true | ||
| - name: Patrick Aloy | ||
| affiliations: | ||
| - Institute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, Barcelona, Catalonia, Spain | ||
| - Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Catalonia, Spain | ||
| - name: Jan Baumbach | ||
| affiliations: | ||
| - Institute for Computational Systems Biology, University of Hamburg, Germany | ||
| - name: Balazs Bohar | ||
| affiliations: | ||
| - Earlham Institute, Norwich, UK | ||
| - Biological Research Centre, Szeged, Hungary | ||
| - name: Vincent J. Carey | ||
| affiliations: | ||
| - Channing Division of Network Medicine, Mass General Brigham, Harvard Medical School, Boston, USA | ||
| - name: Pornpimol Charoentong | ||
| affiliations: | ||
| - Centre for Quantitative Analysis of Molecular and Cellular Biosystems (Bioquant), Heidelberg University, Im Neuenheimer Feld 267, 69120, Heidelberg, Germany | ||
| - Department of Medical Oncology, National Centre for Tumour Diseases (NCT), Heidelberg University Hospital (UKHD), Im Neuenheimer Feld 460, 69120, Heidelberg, Germany | ||
| - name: Katharina Danhauser | ||
| affiliations: | ||
| - Department of Pediatrics, Dr. von Hauner Children’s Hospital, University Hospital, LMU Munich, Germany | ||
| - name: Tunca Doğan | ||
| affiliations: | ||
| - Biological Data Science Lab, Department of Computer Engineering, Hacettepe University, Ankara, Turkey | ||
| - Department of Bioinformatics, Graduate School of Health Sciences, Hacettepe University, Ankara, Turkey | ||
| - name: Johann Dreo | ||
| affiliations: | ||
| - Computational Systems Biomedicine Lab, Department of Computational Biology, Institut Pasteur, Université Paris Cité, Paris, France | ||
| - Bioinformatics and Biostatistics Hub, Institut Pasteur, Université Paris Cité, Paris, France | ||
| - name: Ian Dunham | ||
| affiliations: | ||
| - European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK | ||
| - Open Targets, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK | ||
| - name: Elias Farr | ||
| affiliations: | ||
| - Heidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine, Bioquant, Heidelberg, Germany | ||
| - name: Adrià Fernandez-Torras | ||
| affiliations: | ||
| - Institute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, Barcelona, Catalonia, Spain | ||
| - name: Benjamin M. Gyori | ||
| affiliations: | ||
| - Laboratory of Systems Pharmacology, Harvard Medical School, Boston, USA | ||
| - name: Michael Hartung | ||
| affiliations: | ||
| - Institute for Computational Systems Biology, University of Hamburg, Germany | ||
| - name: Charles Tapley Hoyt | ||
| affiliations: | ||
| - Laboratory of Systems Pharmacology, Harvard Medical School, Boston, USA | ||
| - name: Christoph Klein | ||
| affiliations: | ||
| - Department of Pediatrics, Dr. von Hauner Children’s Hospital, University Hospital, LMU Munich, Germany | ||
| - name: Tamas Korcsmaros | ||
| affiliations: | ||
| - Earlham Institute, Norwich, UK | ||
| - Quadram Institute Bioscience, Norwich, UK | ||
| - name: Andreas Maier | ||
| affiliations: | ||
| - Institute for Computational Systems Biology, University of Hamburg, Germany | ||
| - name: Matthias Mann | ||
| affiliations: | ||
| - Proteomics Program, Novo Nordisk Foundation Centre for Protein Research, University of Copenhagen, Copenhagen, Denmark | ||
| - Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany | ||
| - name: David Ochoa | ||
| affiliations: | ||
| - European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK | ||
| - Open Targets, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK | ||
| - name: Elena Pareja-Lorente | ||
| affiliations: | ||
| - Institute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, Barcelona, Catalonia, Spain | ||
| - name: Ferdinand Popp | ||
| affiliations: | ||
| - Applied Tumour Immunity Clinical Cooperation Unit, National Centre for Tumour Diseases (NCT), German Cancer Research Centre (DKFZ), Im Neuenheimer Feld 460, 69120, Heidelberg, Germany | ||
| - name: Martin Preusse | ||
| affiliations: | ||
| - Centre for Quantitative Analysis of Molecular and Cellular Biosystems (Bioquant), Heidelberg University, Im Neuenheimer Feld 267, 69120, Heidelberg, Germany | ||
| - name: Niklas Probul | ||
| affiliations: | ||
| - Institute for Computational Systems Biology, University of Hamburg, Germany | ||
| - name: Benno Schwikowski | ||
| affiliations: | ||
| - Computational Systems Biomedicine Lab, Department of Computational Biology, Institut Pasteur, Université Paris Cité, Paris, France | ||
| - name: Bünyamin Sen | ||
| affiliations: | ||
| - Biological Data Science Lab, Department of Computer Engineering, Hacettepe University, Ankara, Turkey | ||
| - Department of Bioinformatics, Graduate School of Health Sciences, Hacettepe University, Ankara, Turkey | ||
| - name: Maximilian T. Strauss | ||
| affiliations: | ||
| - Proteomics Program, Novo Nordisk Foundation Centre for Protein Research, University of Copenhagen, Copenhagen, Denmark | ||
| - name: Denes Turei | ||
| affiliations: | ||
| - Heidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine, Bioquant, Heidelberg, Germany | ||
| - name: Erva Ulusoy | ||
| affiliations: | ||
| - Biological Data Science Lab, Department of Computer Engineering, Hacettepe University, Ankara, Turkey | ||
| - Department of Bioinformatics, Graduate School of Health Sciences, Hacettepe University, Ankara, Turkey | ||
| - name: Dagmar Waltemath | ||
| affiliations: | ||
| - Centre for Quantitative Analysis of Molecular and Cellular Biosystems (Bioquant), Heidelberg University, Im Neuenheimer Feld 267, 69120, Heidelberg, Germany | ||
| - name: Judith A. H. Wodke | ||
| affiliations: | ||
| - Centre for Quantitative Analysis of Molecular and Cellular Biosystems (Bioquant), Heidelberg University, Im Neuenheimer Feld 267, 69120, Heidelberg, Germany | ||
| - github: saezrodriguez | ||
| name: Julio Saez-Rodriguez | ||
| initials: JSR | ||
| orcid: 0000-0002-8552-8976 | ||
| twitter: saezlab | ||
| email: pub.saez@uni-heidelberg.de | ||
| affiliations: | ||
| - Heidelberg University, Faculty of Medicine and Heidelberg University Hospital, Institute for Computational Biomedicine, Heidelberg, Germany | ||
| corresponding: true | ||
| - github: slobentanzer | ||
| name: Sebastian Lobentanzer | ||
| initials: SL | ||
| orcid: 0000-0003-3399-6695 | ||
| twitter: slobentanzer | ||
| email: sebastian.lobentanzer@gmail.com | ||
| affiliations: | ||
| - Heidelberg University, Faculty of Medicine and Heidelberg University Hospital, Institute for Computational Biomedicine, Heidelberg, Germany | ||
| corresponding: true | ||
| - name: Patrick Aloy | ||
| affiliations: | ||
| - Institute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, Barcelona, Catalonia, Spain | ||
| - Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Catalonia, Spain | ||
| - name: Jan Baumbach | ||
| affiliations: | ||
| - Institute for Computational Systems Biology, University of Hamburg, Germany | ||
| - name: Balazs Bohar | ||
| affiliations: | ||
| - Earlham Institute, Norwich, UK | ||
| - Biological Research Centre, Szeged, Hungary | ||
| - name: Vincent J. Carey | ||
| affiliations: | ||
| - Channing Division of Network Medicine, Mass General Brigham, Harvard Medical School, Boston, USA | ||
| - name: Pornpimol Charoentong | ||
| affiliations: | ||
| - Centre for Quantitative Analysis of Molecular and Cellular Biosystems (Bioquant), Heidelberg University, Im Neuenheimer Feld 267, 69120, Heidelberg, Germany | ||
| - Department of Medical Oncology, National Centre for Tumour Diseases (NCT), Heidelberg University Hospital (UKHD), Im Neuenheimer Feld 460, 69120, Heidelberg, Germany | ||
| - name: Katharina Danhauser | ||
| affiliations: | ||
| - Department of Pediatrics, Dr. von Hauner Children’s Hospital, University Hospital, LMU Munich, Germany | ||
| - name: Tunca Doğan | ||
| affiliations: | ||
| - Biological Data Science Lab, Department of Computer Engineering, Hacettepe University, Ankara, Turkey | ||
| - Department of Bioinformatics, Graduate School of Health Sciences, Hacettepe University, Ankara, Turkey | ||
| - name: Johann Dreo | ||
| affiliations: | ||
| - Computational Systems Biomedicine Lab, Department of Computational Biology, Institut Pasteur, Université Paris Cité, Paris, France | ||
| - Bioinformatics and Biostatistics Hub, Institut Pasteur, Université Paris Cité, Paris, France | ||
| - name: Ian Dunham | ||
| affiliations: | ||
| - European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK | ||
| - Open Targets, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK | ||
| - name: Elias Farr | ||
| affiliations: | ||
| - Heidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine, Bioquant, Heidelberg, Germany | ||
| - name: Adrià Fernandez-Torras | ||
| affiliations: | ||
| - Institute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, Barcelona, Catalonia, Spain | ||
| - name: Benjamin M. Gyori | ||
| affiliations: | ||
| - Laboratory of Systems Pharmacology, Harvard Medical School, Boston, USA | ||
| - name: Michael Hartung | ||
| affiliations: | ||
| - Institute for Computational Systems Biology, University of Hamburg, Germany | ||
| - name: Charles Tapley Hoyt | ||
| affiliations: | ||
| - Laboratory of Systems Pharmacology, Harvard Medical School, Boston, USA | ||
| - name: Christoph Klein | ||
| affiliations: | ||
| - Department of Pediatrics, Dr. von Hauner Children’s Hospital, University Hospital, LMU Munich, Germany | ||
| - name: Tamas Korcsmaros | ||
| affiliations: | ||
| - Earlham Institute, Norwich, UK | ||
| - Quadram Institute Bioscience, Norwich, UK | ||
| - name: Andreas Maier | ||
| affiliations: | ||
| - Institute for Computational Systems Biology, University of Hamburg, Germany | ||
| - name: Matthias Mann | ||
| affiliations: | ||
| - Proteomics Program, Novo Nordisk Foundation Centre for Protein Research, University of Copenhagen, Copenhagen, Denmark | ||
| - Department of Proteomics and Signal Transduction, Max Planck Institute of Biochemistry, Martinsried, Germany | ||
| - name: David Ochoa | ||
| affiliations: | ||
| - European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK | ||
| - Open Targets, Wellcome Genome Campus, Hinxton, Cambridgeshire CB10 1SD, UK | ||
| - name: Elena Pareja-Lorente | ||
| affiliations: | ||
| - Institute for Research in Biomedicine (IRB Barcelona), the Barcelona Institute of Science and Technology, Barcelona, Catalonia, Spain | ||
| - name: Ferdinand Popp | ||
| affiliations: | ||
| - Applied Tumour Immunity Clinical Cooperation Unit, National Centre for Tumour Diseases (NCT), German Cancer Research Centre (DKFZ), Im Neuenheimer Feld 460, 69120, Heidelberg, Germany | ||
| - name: Martin Preusse | ||
| affiliations: | ||
| - German Centre for Diabetes Research (DZD), Neuherberg, Germany | ||
| - name: Niklas Probul | ||
| affiliations: | ||
| - Institute for Computational Systems Biology, University of Hamburg, Germany | ||
| - name: Benno Schwikowski | ||
| affiliations: | ||
| - Computational Systems Biomedicine Lab, Department of Computational Biology, Institut Pasteur, Université Paris Cité, Paris, France | ||
| - name: Bünyamin Sen | ||
| affiliations: | ||
| - Biological Data Science Lab, Department of Computer Engineering, Hacettepe University, Ankara, Turkey | ||
| - Department of Bioinformatics, Graduate School of Health Sciences, Hacettepe University, Ankara, Turkey | ||
| - name: Maximilian T. Strauss | ||
| affiliations: | ||
| - Proteomics Program, Novo Nordisk Foundation Centre for Protein Research, University of Copenhagen, Copenhagen, Denmark | ||
| - name: Denes Turei | ||
| affiliations: | ||
| - Heidelberg University, Faculty of Medicine, and Heidelberg University Hospital, Institute for Computational Biomedicine, Bioquant, Heidelberg, Germany | ||
| - name: Erva Ulusoy | ||
| affiliations: | ||
| - Biological Data Science Lab, Department of Computer Engineering, Hacettepe University, Ankara, Turkey | ||
| - Department of Bioinformatics, Graduate School of Health Sciences, Hacettepe University, Ankara, Turkey | ||
| - name: Dagmar Waltemath | ||
| affiliations: | ||
| - Centre for Quantitative Analysis of Molecular and Cellular Biosystems (Bioquant), Heidelberg University, Im Neuenheimer Feld 267, 69120, Heidelberg, Germany | ||
| - name: Judith A. H. Wodke | ||
| affiliations: | ||
| - Centre for Quantitative Analysis of Molecular and Cellular Biosystems (Bioquant), Heidelberg University, Im Neuenheimer Feld 267, 69120, Heidelberg, Germany | ||
| - github: saezrodriguez | ||
| name: Julio Saez-Rodriguez | ||
| initials: JSR | ||
| orcid: 0000-0002-8552-8976 | ||
| twitter: saezlab | ||
| email: pub.saez@uni-heidelberg.de | ||
| affiliations: | ||
| - Heidelberg University, Faculty of Medicine and Heidelberg University Hospital, Institute for Computational Biomedicine, Heidelberg, Germany | ||
| corresponding: true |