diff --git a/README.md b/README.md index 0eec4f0..c90f364 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ [![](https://img.shields.io/conda/vn/bioconda/biobb_pmx?label=Conda)](https://anaconda.org/bioconda/biobb_pmx) [![](https://img.shields.io/conda/dn/bioconda/biobb_pmx?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_pmx) [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_pmx?tab=tags) -[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_pmx:4.2.0--pyhdfd78af_0) +[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_pmx:4.2.1--pyhdfd78af_0) [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_pmx) [![](https://img.shields.io/pypi/pyversions/biobb-pmx.svg?label=Python%20Versions)](https://pypi.org/project/biobb-pmx/) @@ -41,7 +41,7 @@ The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb-pmx.readthedocs.io/en/latest/). ### Version -v4.2.0 2023.3 +v4.2.1 2024.2 ### Installation Using PIP: @@ -50,7 +50,7 @@ Using PIP: * Installation: - pip install "biobb_pmx>=4.2.0" + pip install "biobb_pmx>=4.2.1" * Usage: [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) @@ -60,7 +60,7 @@ Using ANACONDA: * Installation: - conda install -c bioconda "biobb_pmx>=4.2.0" + conda install -c bioconda "biobb_pmx>=4.2.1" * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-pmx.readthedocs.io/en/latest/command_line.html) @@ -70,13 +70,13 @@ Using DOCKER: * Installation: - docker pull quay.io/biocontainers/biobb_pmx:4.2.0--pyhdfd78af_0 + docker pull quay.io/biocontainers/biobb_pmx:4.2.1--pyhdfd78af_0 * Usage: - docker run quay.io/biocontainers/biobb_pmx:4.2.0--pyhdfd78af_0 + docker run quay.io/biocontainers/biobb_pmx:4.2.1--pyhdfd78af_0 Using SINGULARITY: @@ -86,7 +86,7 @@ Using SINGULARITY: * Installation: - singularity pull --name biobb_pmx.sif https://depot.galaxyproject.org/singularity/biobb_pmx:4.2.0--pyhdfd78af_0 + singularity pull --name biobb_pmx.sif https://depot.galaxyproject.org/singularity/biobb_pmx:4.2.1--pyhdfd78af_0 * Usage: diff --git a/biobb_pmx/__init__.py b/biobb_pmx/__init__.py index cf0264a..8fc9ad4 100644 --- a/biobb_pmx/__init__.py +++ b/biobb_pmx/__init__.py @@ -2,4 +2,4 @@ name = "biobb_pmx" __all__ = ["pmxbiobb"] -__version__ = "4.2.0" +__version__ = "4.2.1" diff --git a/biobb_pmx/docs/source/change_log.md b/biobb_pmx/docs/source/change_log.md index f306013..671037d 100644 --- a/biobb_pmx/docs/source/change_log.md +++ b/biobb_pmx/docs/source/change_log.md @@ -1,5 +1,14 @@ # Biobb PMX changelog +## What's new in version [4.2.1](https://github.com/bioexcel/biobb_pmx/releases/tag/v4.2.1)? + +### Changes + +* [DOCS] Update JSON +* [TEST] Updating GMXLIB of docker test +* [CI/CD] Update actions/checkout to v4 +* [FIX] Fix type hints + ## What's new in version [4.2.0](https://github.com/bioexcel/biobb_pmx/releases/tag/v4.2.0)? ### Changes diff --git a/biobb_pmx/docs/source/conf.py b/biobb_pmx/docs/source/conf.py index 3fd82a9..dd3e3b0 100644 --- a/biobb_pmx/docs/source/conf.py +++ b/biobb_pmx/docs/source/conf.py @@ -74,9 +74,9 @@ # built documents. # # The short X.Y version. -version = u'4.2.0' +version = u'4.2.1' # The full version, including alpha/beta/rc tags. -release = u'4.2.0' +release = u'4.2.1' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/biobb_pmx/docs/source/readme.md b/biobb_pmx/docs/source/readme.md index 0eec4f0..c90f364 100644 --- a/biobb_pmx/docs/source/readme.md +++ b/biobb_pmx/docs/source/readme.md @@ -3,7 +3,7 @@ [![](https://img.shields.io/conda/vn/bioconda/biobb_pmx?label=Conda)](https://anaconda.org/bioconda/biobb_pmx) [![](https://img.shields.io/conda/dn/bioconda/biobb_pmx?label=Conda%20Downloads)](https://anaconda.org/bioconda/biobb_pmx) [![](https://img.shields.io/badge/Docker-Quay.io-blue)](https://quay.io/repository/biocontainers/biobb_pmx?tab=tags) -[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_pmx:4.2.0--pyhdfd78af_0) +[![](https://img.shields.io/badge/Singularity-GalaxyProject-blue)](https://depot.galaxyproject.org/singularity/biobb_pmx:4.2.1--pyhdfd78af_0) [![](https://img.shields.io/badge/OS-Unix%20%7C%20MacOS-blue)](https://github.com/bioexcel/biobb_pmx) [![](https://img.shields.io/pypi/pyversions/biobb-pmx.svg?label=Python%20Versions)](https://pypi.org/project/biobb-pmx/) @@ -41,7 +41,7 @@ The latest documentation of this package can be found in our readthedocs site: [latest API documentation](http://biobb-pmx.readthedocs.io/en/latest/). ### Version -v4.2.0 2023.3 +v4.2.1 2024.2 ### Installation Using PIP: @@ -50,7 +50,7 @@ Using PIP: * Installation: - pip install "biobb_pmx>=4.2.0" + pip install "biobb_pmx>=4.2.1" * Usage: [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) @@ -60,7 +60,7 @@ Using ANACONDA: * Installation: - conda install -c bioconda "biobb_pmx>=4.2.0" + conda install -c bioconda "biobb_pmx>=4.2.1" * Usage: With conda installation BioBBs can be used with the [Python API documentation](https://biobb-pmx.readthedocs.io/en/latest/modules.html) and the [Command Line documentation](https://biobb-pmx.readthedocs.io/en/latest/command_line.html) @@ -70,13 +70,13 @@ Using DOCKER: * Installation: - docker pull quay.io/biocontainers/biobb_pmx:4.2.0--pyhdfd78af_0 + docker pull quay.io/biocontainers/biobb_pmx:4.2.1--pyhdfd78af_0 * Usage: - docker run quay.io/biocontainers/biobb_pmx:4.2.0--pyhdfd78af_0 + docker run quay.io/biocontainers/biobb_pmx:4.2.1--pyhdfd78af_0 Using SINGULARITY: @@ -86,7 +86,7 @@ Using SINGULARITY: * Installation: - singularity pull --name biobb_pmx.sif https://depot.galaxyproject.org/singularity/biobb_pmx:4.2.0--pyhdfd78af_0 + singularity pull --name biobb_pmx.sif https://depot.galaxyproject.org/singularity/biobb_pmx:4.2.1--pyhdfd78af_0 * Usage: diff --git a/biobb_pmx/docs/source/schema.html b/biobb_pmx/docs/source/schema.html index 997843b..1618089 100644 --- a/biobb_pmx/docs/source/schema.html +++ b/biobb_pmx/docs/source/schema.html @@ -10,7 +10,7 @@ "applicationSubCategory": "http://www.edamontology.org/topic_3892", "citation": "https://www.nature.com/articles/s41597-019-0177-4", "license": "https://www.apache.org/licenses/LICENSE-2.0", - "softwareVersion": "4.2.0", + "softwareVersion": "4.2.1", "applicationSuite": "BioBB BioExcel Building Blocks", "codeRepository": "https://github.com/bioexcel/biobb_pmx", "isAccessibleForFree": "True", diff --git a/setup.py b/setup.py index 2943272..28c2b09 100644 --- a/setup.py +++ b/setup.py @@ -5,7 +5,7 @@ setuptools.setup( name="biobb_pmx", - version="4.2.0", + version="4.2.1", author="Biobb developers", author_email="pau.andrio@bsc.es", description="Biobb_pmx is the Biobb module collection to perform PMX (http://pmx.mpibpc.mpg.de) executions.",