From 609278f7ade5d7a61756758ed87476c2b467dc3d Mon Sep 17 00:00:00 2001 From: Mufaddal Naguthanawala Date: Fri, 13 Dec 2024 15:08:47 -0800 Subject: [PATCH 1/2] Add prefix: biodolphin --- src/bioregistry/data/bioregistry.json | 29 +++++++++++++++++++++++++ src/bioregistry/data/curated_papers.tsv | 1 + 2 files changed, 30 insertions(+) diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json index 2a5140692..5b1a68503 100644 --- a/src/bioregistry/data/bioregistry.json +++ b/src/bioregistry/data/bioregistry.json @@ -8375,6 +8375,35 @@ }, "pattern": "^\\d{11}$" }, + "biodolphin": { + "contact": { + "email": "andrew.mcshan@chemistry.gatech.edu", + "name": "Andrew C. McShan", + "orcid": "0000-0002-3212-9867" + }, + "contributor": { + "email": "m.naguthana@hotmail.com", + "github": "nagutm", + "name": "Mufaddal Naguthanawala", + "orcid": "0009-0009-5240-7463" + }, + "description": "Identifiers for lipid-protein interactions, including details about protein functions, protein families, lipid classifications, lipid-protein binding affinities, membrane association type, and atomic structures.", + "example": "BD1a05-A-A-IPM1", + "github_request_issue": 1327, + "homepage": "https://biodolphin.chemistry.gatech.edu", + "name": "BioDolphin", + "pattern": "^BD\\d[a-zA-Z0-9]+-[A-Za-z]-[A-Za-z]-[A-Za-z0-9]+$", + "publications": [ + { + "doi": "10.1038/s42004-024-01384-z", + "pmc": "PMC11618342", + "pubmed": "39633021", + "title": "BioDolphin as a comprehensive database of lipid-protein binding interactions", + "year": 2024 + } + ], + "uri_format": "https://biodolphin.chemistry.gatech.edu/detail/$1" + }, "biofactoid": { "contact": { "email": "jeffvin.wong@utoronto.ca", diff --git a/src/bioregistry/data/curated_papers.tsv b/src/bioregistry/data/curated_papers.tsv index 62129d71d..1c78832a8 100644 --- a/src/bioregistry/data/curated_papers.tsv +++ b/src/bioregistry/data/curated_papers.tsv @@ -90,3 +90,4 @@ pubmed relevant orcid date_curated relevancy_type pr_added notes 39576581 1 0009-0009-5240-7463 2024-12-06 new_provider 1297 This resource is a provider for UniProt IDs 39588755 1 0009-0009-5240-7463 2024-12-06 new_prefix 1295 Identifiers for microbially derived natural products 39607847 0 0009-0009-5240-7463 2024-12-03 irrelevant_other 1296 +39633021 1 0009-0009-5240-7463 2024-12-12 new_prefix 1327 Identifiers for lipid-protein interactions \ No newline at end of file From 41a26033b85444ea70d54a225375d47885c7271d Mon Sep 17 00:00:00 2001 From: Ben Gyori Date: Thu, 19 Dec 2024 16:12:59 -0500 Subject: [PATCH 2/2] Add reviewer info --- src/bioregistry/data/bioregistry.json | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/src/bioregistry/data/bioregistry.json b/src/bioregistry/data/bioregistry.json index 1a5cbf423..6bdbee134 100644 --- a/src/bioregistry/data/bioregistry.json +++ b/src/bioregistry/data/bioregistry.json @@ -8402,6 +8402,12 @@ "year": 2024 } ], + "reviewer": { + "email": "b.gyori@northeastern.edu", + "github": "bgyori", + "name": "Benjamin M. Gyori", + "orcid": "0000-0001-9439-5346" + }, "uri_format": "https://biodolphin.chemistry.gatech.edu/detail/$1" }, "biofactoid": {