test-coverage.yaml

on:
  push:
    branches:
      - main
      - master
  pull_request:
    branches:
      - main
      - master

name: test-coverage

jobs:
  test-coverage:
    timeout-minutes: 30
    runs-on: ubuntu-20.04
    env:
      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
      ADS: ${{secrets.ADS}}
      CDS: ${{secrets.CDS}}
      WEBAPI: ${{secrets.WEBAPI}}

    steps:
      - uses: actions/checkout@v2
      - uses: r-lib/actions/setup-r@v2
      - uses: r-lib/actions/setup-pandoc@v2

      - name: Query dependencies
        run: |
          install.packages('remotes')
          saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
          writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version")
        shell: Rscript {0}

      - name: Install system dependencies
        if: runner.os == 'Linux'
        run: |
          while read -r cmd
          do
            eval sudo $cmd
          done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))')
          sudo apt-get install libgdal-dev libproj-dev libgeos-dev libudunits2-dev netcdf-bin libsodium-dev libsodium23

      - name: Install dependencies
        run: |
          install.packages(c("remotes"))
          remotes::install_deps(dependencies = TRUE)
          remotes::install_cran("covr")
        shell: Rscript {0}

      - name: Test coverage
        run: covr::codecov()
        shell: Rscript {0}