From b181fc6a3429a2b3dcb5907145cfea05b5c553b8 Mon Sep 17 00:00:00 2001
From: Loic Couderc <loic.couderc@univ-lille.fr>
Date: Mon, 30 Sep 2019 14:45:44 +0200
Subject: [PATCH] Remove FASTX occurence #93

---
 README.md | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/README.md b/README.md
index 21613d4..ff110c4 100644
--- a/README.md
+++ b/README.md
@@ -135,7 +135,7 @@ where `$DBDIR` is the directory used to store the database.
 When your database is ready, then you will be able to reconstruct your markers:
 * Assembly only  
   In this mode, MATAM will reconstruct the full length sequences present in the sample.  
-  `matam_assembly.py -d $DBDIR/prefix -i $FASTX --cpu 4 --max_memory 10000 -v`
+  `matam_assembly.py -d $DBDIR/prefix -i reads.fastq --cpu 4 --max_memory 10000 -v`
 
 * Assembly and taxonomic assignment  
   In this mode, MATAM additionnaly provides a taxonomic classification of the sequences found, together with their abundance. Note that the