Fix import for numpy 2.0 #773
Workflow file for this run
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name: TestSuite | |
on: [push, pull_request] | |
jobs: | |
get_python_versions: | |
name: "Determine Python versions" | |
runs-on: ubuntu-latest | |
outputs: | |
min-python: ${{ steps.nep29.outputs.min-python }} | |
max-python: ${{ steps.nep29.outputs.max-python }} | |
steps: | |
- name: "calculate versions according to NEP29" | |
id: nep29 | |
uses: mstimberg/github-calc-nep29@v0.5 | |
with: | |
token: ${{ secrets.GITHUB_TOKEN }} | |
pre-commit: | |
name: Run linters with pre-commit | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: actions/setup-python@v4 | |
with: | |
python-version: '3.10' | |
cache: 'pip' | |
cache-dependency-path: .devcontainer/dev-requirements.txt | |
- name: Install deps | |
run: pip3 install -r .devcontainer/dev-requirements.txt | |
- name: Run pre-commit hooks | |
run: pre-commit run --all-files --show-diff-on-failure | |
testing: | |
needs: [get_python_versions, pre-commit] | |
name: "Python ${{ matrix.python-version }} on ${{ matrix.os }} (standalone: ${{ matrix.standalone }}, 32bit: ${{ matrix.float_dtype_32 }})" | |
runs-on: ${{ matrix.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
os: [ubuntu-20.04, windows-2019, macOS-11] | |
standalone: [false, true] | |
float_dtype_32: [false, true] | |
python-version: ["${{ needs.get_python_versions.outputs.max-python }}"] | |
include: | |
- os: ubuntu-20.04 | |
standalone: false | |
python-version: "${{ needs.get_python_versions.outputs.min-python }}" | |
float_dtype_32: false | |
- os: ubuntu-20.04 | |
standalone: true | |
python-version: "${{ needs.get_python_versions.outputs.min-python }}" | |
float_dtype_32: false | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- name: Checkout Repository | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
- name: Setup Conda and Python | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
auto-update-conda: true | |
auto-activate-base: false | |
channels: conda-forge,defaults | |
channel-priority: true | |
activate-environment: 'test_env' | |
python-version: ${{ matrix.python-version }} | |
- name: Install Brian2 and dependencies | |
run: | | |
conda install -n test_env --quiet --yes -c conda-forge pip pytest cython sympy future pyparsing numpy jinja2 six scipy sphinx gsl coverage | |
pip install . | |
- name: Run Tests | |
run: | | |
cd $GITHUB_WORKSPACE/.. # move out of the workspace to avoid direct import | |
coverage run --rcfile=$GITHUB_WORKSPACE/.coveragerc $GITHUB_WORKSPACE/$SCRIPT_NAME | |
env: | |
SCRIPT_NAME: dev/continuous-integration/run_test_suite.py | |
SPHINX_DIR: ${{ github.workspace }}/docs_sphinx | |
AGENT_OS: ${{runner.os}} | |
STANDALONE: ${{ matrix.standalone }} | |
FLOAT_DTYPE_32: ${{ matrix.float_dtype_32 }} | |
- name: Upload coverage data to coveralls | |
if: ${{ startsWith(matrix.os, 'ubuntu-') && matrix.python-version == needs.get_python_versions.outputs.max-python }} | |
run: | | |
cp $GITHUB_WORKSPACE/../.coverage . | |
python -m pip install --upgrade coveralls | |
coveralls --service=github --rcfile=$GITHUB_WORKSPACE/.coveragerc | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
COVERALLS_FLAG_NAME: ${{ github.job }} | |
COVERALLS_PARALLEL: true | |
coveralls: | |
name: Indicate completion to coveralls.io | |
needs: testing | |
runs-on: ubuntu-latest | |
container: python:3-slim | |
steps: | |
- name: Finished | |
run: | | |
python -m pip install --upgrade coveralls | |
coveralls --service=github --finish --rcfile=$GITHUB_WORKSPACE/.coveragerc | |
env: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
test_doc_build: | |
needs: get_python_versions | |
name: Test building the documentation | |
runs-on: ubuntu-latest | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- name: Checkout Repository | |
uses: actions/checkout@v3 | |
with: | |
fetch-depth: 0 | |
submodules: true | |
- name: Setup Conda and Python | |
uses: conda-incubator/setup-miniconda@v2 | |
with: | |
auto-update-conda: true | |
auto-activate-base: false | |
channels: conda-forge,defaults | |
channel-priority: true | |
activate-environment: 'test_env' | |
python-version: "${{ needs.get_python_versions.outputs.max-python }}" | |
- name: Install dependencies | |
run: pip install -r rtd-requirements.txt | |
- name: Install brian2 | |
run: pip install . | |
- name: Build HTML documentation | |
run: | | |
cd docs_sphinx | |
sphinx-build -b html . ../docs | |
env: | |
READTHEDOCS: True |