From fe076350282c483b4301f89bd607efabb6123ee6 Mon Sep 17 00:00:00 2001
From: 5im1z <xiaomeng@broadinstitute.org>
Date: Mon, 22 Jan 2024 18:51:18 +0000
Subject: [PATCH] localize fai

---
 sandbox/wgs_qc/tasks/picard.wdl | 1 +
 1 file changed, 1 insertion(+)

diff --git a/sandbox/wgs_qc/tasks/picard.wdl b/sandbox/wgs_qc/tasks/picard.wdl
index eed0911e..ed21ac66 100644
--- a/sandbox/wgs_qc/tasks/picard.wdl
+++ b/sandbox/wgs_qc/tasks/picard.wdl
@@ -1239,6 +1239,7 @@ task EstimateComplexity {
         File inputBam
         String metricsPath
         File referenceFasta="gs://genomics-public-data/resources/broad/hg38/v0/Homo_sapiens_assembly38.fasta"
+        File referenceFai="gs://genomics-public-data/resources/broad/hg38/v0/Homo_sapiens_assembly38.fasta.fai"
 
         Int javaXmxMb =  6656  # 6.5G
         String memoryMb = javaXmxMb + 512