From 886106df1a7e24193c430ac66a705f7bcb95a340 Mon Sep 17 00:00:00 2001 From: Samuel Lee Date: Wed, 20 Jan 2021 23:13:46 -0500 Subject: [PATCH] Fixed error in FilterIntervals logic when filtering on annotations with -XL. --- .../tools/copynumber/FilterIntervalsIntegrationTest.java | 1 + 1 file changed, 1 insertion(+) diff --git a/src/test/java/org/broadinstitute/hellbender/tools/copynumber/FilterIntervalsIntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/tools/copynumber/FilterIntervalsIntegrationTest.java index acc111f2552..4683b66cdb6 100644 --- a/src/test/java/org/broadinstitute/hellbender/tools/copynumber/FilterIntervalsIntegrationTest.java +++ b/src/test/java/org/broadinstitute/hellbender/tools/copynumber/FilterIntervalsIntegrationTest.java @@ -111,6 +111,7 @@ public Object[][] dataAnnotationBasedFilters() { {intervalsFile, Collections.emptyList(), annotatedIntervalsFile, 0., 1., 0.1, 0.9, 0.1, 0.9, Arrays.asList(2, 3, 5)}, {intervalsFile, Collections.emptyList(), annotatedIntervalsFile, 0.1, 0.9, 0.1, 0.9, 0.1, 0.9, Arrays.asList(2, 5)}, {intervalsFile, Collections.singletonList("20:1-10"), annotatedIntervalsFile, 0., 1., 0., 1., 0., 1., Arrays.asList(1, 2, 3, 4, 5)}, + {intervalsFile, Collections.singletonList("20:1-15"), annotatedIntervalsFile, 0.1, 0.9, 0., 1., 0., 1., Arrays.asList(2, 5)}, //regression test for {intervalsFile, Arrays.asList("20:1-15", "20:35-45"), annotatedIntervalsFile, 0., 1., 0., 1., 0., 1., Arrays.asList(2, 5)}, {intervalsFile, Collections.singletonList("20:25-50"), annotatedIntervalsFile, 0.1, 0.9, 0., 1., 0., 1., Arrays.asList(0, 1, 5)}, {intervalsWithExtraIntervalFile, Collections.emptyList(), annotatedIntervalsFile, 0., 1., 0., 1., 0., 1., Arrays.asList(0, 1, 2, 3, 4, 5)},