From 5e623f9ac208ab9ce85196281716ee360c145e28 Mon Sep 17 00:00:00 2001 From: Rebecca Asch Date: Wed, 24 Aug 2022 12:52:14 -0400 Subject: [PATCH] python -> python3 --- .dockstore.yml | 1 + scripts/variantstore/wdl/GvsExtractCallset.wdl | 2 +- 2 files changed, 2 insertions(+), 1 deletion(-) diff --git a/.dockstore.yml b/.dockstore.yml index 41e282b6cd8..b18930ec2b2 100644 --- a/.dockstore.yml +++ b/.dockstore.yml @@ -79,6 +79,7 @@ workflows: branches: - master - ah_var_store + - rsa_sum_python - name: GvsRescatterCallsetInterval subclass: WDL primaryDescriptorPath: /scripts/variantstore/wdl/GvsRescatterCallsetInterval.wdl diff --git a/scripts/variantstore/wdl/GvsExtractCallset.wdl b/scripts/variantstore/wdl/GvsExtractCallset.wdl index a16849ddefc..9dff2054fc9 100644 --- a/scripts/variantstore/wdl/GvsExtractCallset.wdl +++ b/scripts/variantstore/wdl/GvsExtractCallset.wdl @@ -386,7 +386,7 @@ task SumBytes { command <<< set -e - echo "~{sep=" " file_sizes_bytes}" | tr " " "\n" | python -c " + echo "~{sep=" " file_sizes_bytes}" | tr " " "\n" | python3 -c " import sys; total_bytes = sum(float(i.strip()) for i in sys.stdin); total_mb = total_bytes/10**6;