From 35448685f1851931e008f5472981ce85a70cfa12 Mon Sep 17 00:00:00 2001
From: Danny Park <dpark@broadinstitute.org>
Date: Tue, 29 May 2018 08:41:00 -0400
Subject: [PATCH] forgot python subcommand

---
 pipes/WDL/workflows/tasks/demux.wdl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pipes/WDL/workflows/tasks/demux.wdl b/pipes/WDL/workflows/tasks/demux.wdl
index 89c636a75..039a4e37c 100644
--- a/pipes/WDL/workflows/tasks/demux.wdl
+++ b/pipes/WDL/workflows/tasks/demux.wdl
@@ -124,7 +124,7 @@ task merge_and_reheader_bams {
     fi    
 
     if [ -f ${reheader_table} ]; then
-      read_utils.py merged.bam ${reheader_table} ${out_basename}.bam --loglevel DEBUG
+      read_utils.py reheader_bam merged.bam ${reheader_table} ${out_basename}.bam --loglevel DEBUG
     else
       echo "Skipping reheader, no mapping table specified"
       ln -s merged.bam ${out_basename}.bam