diff --git a/pipelines/skylab/atac/atac.wdl b/pipelines/skylab/atac/atac.wdl index 60bd780f22..563796f72f 100644 --- a/pipelines/skylab/atac/atac.wdl +++ b/pipelines/skylab/atac/atac.wdl @@ -638,7 +638,7 @@ task PeakCalling { pip3 install snapatac2==2.7.0 scanpy file_to_change=/usr/local/lib/python3.10/site-packages/snapatac2/tools/_call_peaks.py - sed -i '164s/.*/\t\t\t\tpeaks = [_call_peaks(x) for x in fragments.values()]/' $file_to_change + sed -i '164s/.*/ peaks = [_call_peaks(x) for x in fragments.values()]/' $file_to_change python3 <