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Specific settings for peptide search? #3

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ht-lau opened this issue Oct 8, 2023 · 1 comment
Open

Specific settings for peptide search? #3

ht-lau opened this issue Oct 8, 2023 · 1 comment
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@ht-lau
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ht-lau commented Oct 8, 2023

Great idea and good tool. Thank you.

Can you specify the Fragpipe settings in the descriptions? Specifically, it seems that decoy is needed for for calculation, is it correct? I don’t think Fragpipe print decoys by default.

HT
@YongchaoDou
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On the "Validation" page of FragPipe, you need to check "Print decoys" at the bottom of this page.

Yongchao Dou

@iblacksand iblacksand added the question Further information is requested label Oct 11, 2023
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@iblacksand @YongchaoDou @ht-lau