From a5c2ca6aed521ce36ae006d0f436902f17bcaf32 Mon Sep 17 00:00:00 2001
From: Riza Nugraha <rnugraha@gmail.com>
Date: Tue, 6 Feb 2018 17:13:35 +0100
Subject: [PATCH] Make germline mutation marker thinner and fix bugs when
 displaying recurrence germline mutations

---
 src/shared/components/oncoprint/geneticrules.ts | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/src/shared/components/oncoprint/geneticrules.ts b/src/shared/components/oncoprint/geneticrules.ts
index 6163840c902..23c8ac7dbd4 100644
--- a/src/shared/components/oncoprint/geneticrules.ts
+++ b/src/shared/components/oncoprint/geneticrules.ts
@@ -167,9 +167,9 @@ let non_mutation_rule_params = {
                 'type': 'rectangle',
                 'fill': MUT_COLOR_GERMLINE,
                 'x': '0%',
-                'y': '45.5%',
+                'y': '46%',
                 'width': '100%',
-                'height': '9%',
+                'height': '8%',
                 'z': 7
             }],
             legend_label: 'Germline Mutation'
@@ -302,7 +302,7 @@ export const genetic_rule_set_different_colors_recurrence:RuleSetParams = {
                 }],
                 legend_label: 'Promoter Mutation'
             },
-            'trunc_rec, trunc_rec_germ': {
+            'trunc_rec,trunc_rec_germ': {
                 shapes: [{
                     'type': 'rectangle',
                     'fill': MUT_COLOR_TRUNC,
@@ -314,7 +314,7 @@ export const genetic_rule_set_different_colors_recurrence:RuleSetParams = {
                 }],
                 legend_label: 'Truncating Mutation (putative driver)',
             },
-            'trunc, trunc_germ': {
+            'trunc,trunc_germ': {
                 shapes: [{
                     'type': 'rectangle',
                     'fill': MUT_COLOR_TRUNC_PASSENGER,
@@ -326,7 +326,7 @@ export const genetic_rule_set_different_colors_recurrence:RuleSetParams = {
                 }],
                 legend_label: 'Truncating Mutation (putative passenger)',
             },
-            'inframe_rec, inframe_rec_germ': {
+            'inframe_rec,inframe_rec_germ': {
                 shapes: [{
                     'type': 'rectangle',
                     'fill': MUT_COLOR_INFRAME,
@@ -338,7 +338,7 @@ export const genetic_rule_set_different_colors_recurrence:RuleSetParams = {
                 }],
                 legend_label: 'Inframe Mutation (putative driver)',
             },
-            'inframe, inframe_germ': {
+            'inframe,inframe_germ': {
                 shapes: [{
                     'type': 'rectangle',
                     'fill': MUT_COLOR_INFRAME_PASSENGER,
@@ -350,7 +350,7 @@ export const genetic_rule_set_different_colors_recurrence:RuleSetParams = {
                 }],
                 legend_label: 'Inframe Mutation (putative passenger)',
             },
-            'missense_rec, missense_rec_germ': {
+            'missense_rec,missense_rec_germ': {
                 shapes: [{
                     'type': 'rectangle',
                     'fill': MUT_COLOR_MISSENSE,
@@ -362,7 +362,7 @@ export const genetic_rule_set_different_colors_recurrence:RuleSetParams = {
                 }],
                 legend_label: 'Missense Mutation (putative driver)',
             },
-            'missense, missense_germ': {
+            'missense,missense_germ': {
                 shapes: [{
                     'type': 'rectangle',
                     'fill': MUT_COLOR_MISSENSE_PASSENGER,