diff --git a/end-to-end-test/remote/specs/core/results.spec.js b/end-to-end-test/remote/specs/core/results.spec.js
index a691498de93..cc5f460dbc1 100644
--- a/end-to-end-test/remote/specs/core/results.spec.js
+++ b/end-to-end-test/remote/specs/core/results.spec.js
@@ -203,10 +203,7 @@ describe('Results Page', function() {
                 var url = `${CBIOPORTAL_URL}/results/mutations?tab_index=tab_visualize&cancer_study_list=ov_tcga_pub&cancer_study_id=ov_tcga_pub&genetic_profile_ids_PROFILE_MUTATION_EXTENDED=ov_tcga_pub_mutations&Z_SCORE_THRESHOLD=2.0&case_set_id=ov_tcga_pub_3way_complete&gene_list=TP53+PTEN&gene_set_choice=user-defined-list&Action=Submit`;
                 browser.url(url);
                 $('[data-test=view3DStructure]').waitForExist({
-                    timeout: 10000,
-                });
-                $('[data-test=view3DStructure]').waitForEnabled({
-                    timeout: 10000,
+                    timeout: 20000,
                 });
                 $('[data-test=oncogenic-icon-image]').waitForDisplayed({
                     timeout: 10000,
diff --git a/env/custom.sh b/env/custom.sh
index ef915d8ab0a..66cf05bfc9d 100644
--- a/env/custom.sh
+++ b/env/custom.sh
@@ -1,2 +1,2 @@
-export CBIOPORTAL_URL="http://localhost:8080"
-export GENOME_NEXUS_URL="https://www.genomenexus.org"
+#export CBIOPORTAL_URL="http://localhost:8080"
+#export GENOME_NEXUS_URL="https://www.genomenexus.org"
diff --git a/env/master.sh b/env/master.sh
index d84e56dda80..fe9b4c528c8 100644
--- a/env/master.sh
+++ b/env/master.sh
@@ -1,2 +1,2 @@
-export CBIOPORTAL_URL="${CBIOPORTAL_URL:-https://www.cbioportal.org}"
+export CBIOPORTAL_URL="${CBIOPORTAL_URL:-https://master.cbioportal.org}"
 export GENOME_NEXUS_URL="${GENOME_NEXUS_URL:-https://www.genomenexus.org}"
diff --git a/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI-docs.json b/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI-docs.json
index 78b6bb4c2a6..542f4bfc72a 100644
--- a/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI-docs.json
+++ b/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI-docs.json
@@ -61,7 +61,18 @@
       "name": "Generic Assays"
     },
     {
-      "name": "Structural Variants"
+      "name": "Generic Assay Data"
+    },
+    {
+      "name": "Info"
+    },
+    {
+      "name": "Gene Panel Data",
+      "description": " "
+    },
+    {
+      "name": "Server running status",
+      "description": "This end point does not require authentication"
     },
     {
       "name": "Treatments",
@@ -480,7 +491,7 @@
     "/gene-panel-data/fetch": {
       "post": {
         "tags": [
-          "Gene Panels"
+          "Gene Panel Data"
         ],
         "summary": "Fetch gene panel data",
         "operationId": "fetchGenePanelDataInMultipleMolecularProfilesUsingPOST",
@@ -693,10 +704,161 @@
         "deprecated": false
       }
     },
+    "/generic-assay-data/{molecularProfileId}/generic-assay/{genericAssayStableId}": {
+      "get": {
+        "tags": [
+          "Generic Assay Data"
+        ],
+        "summary": "Get generic_assay_data in a molecular profile",
+        "operationId": "getGenericAssayDataInMolecularProfileUsingGET",
+        "produces": [
+          "application/json"
+        ],
+        "parameters": [
+          {
+            "name": "genericAssayStableId",
+            "in": "path",
+            "description": "Generic Assay stable ID",
+            "required": true,
+            "type": "string"
+          },
+          {
+            "name": "molecularProfileId",
+            "in": "path",
+            "description": "Molecular Profile ID",
+            "required": true,
+            "type": "string"
+          },
+          {
+            "name": "projection",
+            "in": "query",
+            "description": "Level of detail of the response",
+            "required": false,
+            "type": "string",
+            "default": "SUMMARY",
+            "allowEmptyValue": false,
+            "enum": [
+              "ID",
+              "SUMMARY",
+              "DETAILED",
+              "META"
+            ]
+          }
+        ],
+        "responses": {
+          "200": {
+            "description": "OK",
+            "schema": {
+              "type": "array",
+              "items": {
+                "$ref": "#/definitions/GenericAssayData"
+              }
+            }
+          }
+        },
+        "deprecated": false
+      }
+    },
+    "/generic-assay-meta/generic-assay/{genericAssayStableId}": {
+      "get": {
+        "tags": [
+          "Generic Assays"
+        ],
+        "summary": "Fetch meta data for generic-assay by ID",
+        "operationId": "getGenericAssayMeta_gaUsingGET",
+        "produces": [
+          "application/json"
+        ],
+        "parameters": [
+          {
+            "name": "genericAssayStableId",
+            "in": "path",
+            "description": "Generic Assay stable ID",
+            "required": false,
+            "type": "string"
+          },
+          {
+            "name": "projection",
+            "in": "query",
+            "description": "Level of detail of the response",
+            "required": false,
+            "type": "string",
+            "default": "SUMMARY",
+            "allowEmptyValue": false,
+            "enum": [
+              "ID",
+              "SUMMARY",
+              "DETAILED",
+              "META"
+            ]
+          }
+        ],
+        "responses": {
+          "200": {
+            "description": "OK",
+            "schema": {
+              "type": "array",
+              "items": {
+                "$ref": "#/definitions/GenericAssayMeta"
+              }
+            }
+          }
+        },
+        "deprecated": false
+      }
+    },
+    "/generic-assay-meta/{molecularProfileId}": {
+      "get": {
+        "tags": [
+          "Generic Assays"
+        ],
+        "summary": "Fetch meta data for generic-assay by ID",
+        "operationId": "getGenericAssayMetaUsingGET",
+        "produces": [
+          "application/json"
+        ],
+        "parameters": [
+          {
+            "name": "molecularProfileId",
+            "in": "path",
+            "description": "Molecular Profile ID",
+            "required": true,
+            "type": "string"
+          },
+          {
+            "name": "projection",
+            "in": "query",
+            "description": "Level of detail of the response",
+            "required": false,
+            "type": "string",
+            "default": "SUMMARY",
+            "allowEmptyValue": false,
+            "enum": [
+              "ID",
+              "SUMMARY",
+              "DETAILED",
+              "META"
+            ]
+          }
+        ],
+        "responses": {
+          "200": {
+            "description": "OK",
+            "schema": {
+              "type": "array",
+              "items": {
+                "$ref": "#/definitions/GenericAssayMeta"
+              }
+            }
+          }
+        },
+        "deprecated": false
+      }
+    },
     "/generic_assay_data/fetch": {
       "post": {
         "tags": [
-          "Generic Assays"
+          "Generic Assay Data"
         ],
         "summary": "Fetch generic_assay_data",
         "operationId": "fetchGenericAssayDataInMultipleMolecularProfilesUsingPOST",
@@ -749,7 +911,7 @@
     "/generic_assay_data/{molecularProfileId}/fetch": {
       "post": {
         "tags": [
-          "Generic Assays"
+          "Generic Assay Data"
         ],
         "summary": "fetch generic_assay_data in a molecular profile",
         "operationId": "fetchGenericAssayDataInMolecularProfileUsingPOST",
@@ -812,7 +974,7 @@
           "Generic Assays"
         ],
         "summary": "Fetch meta data for generic-assay by ID",
-        "operationId": "fetchGenericAssayMetaDataUsingPOST",
+        "operationId": "fetchGenericAssayMetaUsingPOST",
         "consumes": [
           "application/json"
         ],
@@ -1102,6 +1264,48 @@
         "deprecated": false
       }
     },
+    "/health": {
+      "get": {
+        "tags": [
+          "Server running status"
+        ],
+        "summary": "Get the running status of the server",
+        "operationId": "getServerStatusUsingGET",
+        "produces": [
+          "application/json"
+        ],
+        "responses": {
+          "200": {
+            "description": "OK",
+            "schema": {
+              "$ref": "#/definitions/ServerStatusMessage"
+            }
+          }
+        },
+        "deprecated": false
+      }
+    },
+    "/info": {
+      "get": {
+        "tags": [
+          "Info"
+        ],
+        "summary": "Get information about the running instance",
+        "operationId": "getInfoUsingGET",
+        "produces": [
+          "application/json"
+        ],
+        "responses": {
+          "200": {
+            "description": "OK",
+            "schema": {
+              "$ref": "#/definitions/Info"
+            }
+          }
+        },
+        "deprecated": false
+      }
+    },
     "/molecular-data/fetch": {
       "post": {
         "tags": [
@@ -1489,7 +1693,7 @@
     "/molecular-profiles/{molecularProfileId}/gene-panel-data/fetch": {
       "post": {
         "tags": [
-          "Gene Panels"
+          "Gene Panel Data"
         ],
         "summary": "Get gene panel data",
         "operationId": "getGenePanelDataUsingPOST",
@@ -2563,81 +2767,6 @@
         "deprecated": false
       }
     },
-    "/structural-variant/fetch": {
-      "post": {
-        "tags": [
-          "Structural Variants"
-        ],
-        "summary": "Fetch structural variants for entrezGeneIds and molecularProfileIds or sampleMolecularIdentifiers",
-        "operationId": "fetchStructuralVariantsUsingPOST",
-        "consumes": [
-          "application/json"
-        ],
-        "produces": [
-          "application/json"
-        ],
-        "parameters": [
-          {
-            "name": "entrezGeneIds",
-            "in": "query",
-            "required": false,
-            "type": "array",
-            "items": {
-              "type": "integer",
-              "format": "int32"
-            },
-            "collectionFormat": "multi",
-            "maximum": 10000000,
-            "minimum": 0
-          },
-          {
-            "name": "molecularProfileIds",
-            "in": "query",
-            "required": false,
-            "type": "array",
-            "items": {
-              "type": "string"
-            },
-            "collectionFormat": "multi",
-            "maximum": 10000000,
-            "minimum": 0
-          },
-          {
-            "name": "sampleMolecularIdentifiers[0].molecularProfileId",
-            "in": "query",
-            "required": false,
-            "type": "string"
-          },
-          {
-            "name": "sampleMolecularIdentifiers[0].sampleId",
-            "in": "query",
-            "required": false,
-            "type": "string"
-          },
-          {
-            "in": "body",
-            "name": "structuralVariantFilter",
-            "description": "List of entrezGeneIds and molecularProfileIds or sampleMolecularIdentifiers",
-            "required": true,
-            "schema": {
-              "$ref": "#/definitions/StructuralVariantFilter"
-            }
-          }
-        ],
-        "responses": {
-          "200": {
-            "description": "OK",
-            "schema": {
-              "type": "array",
-              "items": {
-                "$ref": "#/definitions/StructuralVariant"
-              }
-            }
-          }
-        },
-        "deprecated": false
-      }
-    },
     "/studies": {
       "get": {
         "tags": [
@@ -5277,6 +5406,62 @@
       },
       "title": "GenomicDataFilter"
     },
+    "Info": {
+      "type": "object",
+      "required": [
+        "dbVersion",
+        "gitBranch",
+        "gitCommitId",
+        "gitCommitIdAbbrev",
+        "gitCommitIdDescribe",
+        "gitCommitIdDescribeShort",
+        "gitCommitMessageFull",
+        "gitCommitMessageShort",
+        "gitCommitMessageUserEmail",
+        "gitCommitMessageUserName",
+        "gitDirty",
+        "portalVersion"
+      ],
+      "properties": {
+        "dbVersion": {
+          "type": "string"
+        },
+        "gitBranch": {
+          "type": "string"
+        },
+        "gitCommitId": {
+          "type": "string"
+        },
+        "gitCommitIdAbbrev": {
+          "type": "string"
+        },
+        "gitCommitIdDescribe": {
+          "type": "string"
+        },
+        "gitCommitIdDescribeShort": {
+          "type": "string"
+        },
+        "gitCommitMessageFull": {
+          "type": "string"
+        },
+        "gitCommitMessageShort": {
+          "type": "string"
+        },
+        "gitCommitMessageUserEmail": {
+          "type": "string"
+        },
+        "gitCommitMessageUserName": {
+          "type": "string"
+        },
+        "gitDirty": {
+          "type": "boolean"
+        },
+        "portalVersion": {
+          "type": "string"
+        }
+      },
+      "title": "Info"
+    },
     "MolecularDataFilter": {
       "type": "object",
       "properties": {
@@ -5929,188 +6114,14 @@
       },
       "title": "SampleTreatmentRow"
     },
-    "StructuralVariant": {
+    "ServerStatusMessage": {
       "type": "object",
       "properties": {
-        "annotation": {
-          "type": "string"
-        },
-        "breakpointType": {
-          "type": "string"
-        },
-        "center": {
-          "type": "string"
-        },
-        "comments": {
-          "type": "string"
-        },
-        "connectionType": {
-          "type": "string"
-        },
-        "dnaSupport": {
-          "type": "string"
-        },
-        "driverFilter": {
-          "type": "string"
-        },
-        "driverFilterAnn": {
-          "type": "string"
-        },
-        "driverTiersFilter": {
-          "type": "string"
-        },
-        "driverTiersFilterAnn": {
-          "type": "string"
-        },
-        "eventInfo": {
-          "type": "string"
-        },
-        "externalAnnotation": {
-          "type": "string"
-        },
-        "length": {
-          "type": "integer",
-          "format": "int32"
-        },
-        "molecularProfileId": {
-          "type": "string"
-        },
-        "ncbiBuild": {
-          "type": "string"
-        },
-        "normalPairedEndReadCount": {
-          "type": "integer",
-          "format": "int32"
-        },
-        "normalReadCount": {
-          "type": "integer",
-          "format": "int32"
-        },
-        "normalSplitReadCount": {
-          "type": "integer",
-          "format": "int32"
-        },
-        "normalVariantCount": {
-          "type": "integer",
-          "format": "int32"
-        },
-        "patientId": {
-          "type": "string"
-        },
-        "rnaSupport": {
-          "type": "string"
-        },
-        "sampleId": {
-          "type": "string"
-        },
-        "site1Chromosome": {
-          "type": "string"
-        },
-        "site1Description": {
-          "type": "string"
-        },
-        "site1EnsemblTranscriptId": {
-          "type": "string"
-        },
-        "site1EntrezGeneId": {
-          "type": "integer",
-          "format": "int32"
-        },
-        "site1Exon": {
-          "type": "integer",
-          "format": "int32"
-        },
-        "site1HugoSymbol": {
-          "type": "string"
-        },
-        "site1Position": {
-          "type": "integer",
-          "format": "int32"
-        },
-        "site2Chromosome": {
-          "type": "string"
-        },
-        "site2Description": {
-          "type": "string"
-        },
-        "site2EffectOnFrame": {
-          "type": "string"
-        },
-        "site2EnsemblTranscriptId": {
-          "type": "string"
-        },
-        "site2EntrezGeneId": {
-          "type": "integer",
-          "format": "int32"
-        },
-        "site2Exon": {
-          "type": "integer",
-          "format": "int32"
-        },
-        "site2HugoSymbol": {
-          "type": "string"
-        },
-        "site2Position": {
-          "type": "integer",
-          "format": "int32"
-        },
-        "studyId": {
-          "type": "string"
-        },
-        "tumorPairedEndReadCount": {
-          "type": "integer",
-          "format": "int32"
-        },
-        "tumorReadCount": {
-          "type": "integer",
-          "format": "int32"
-        },
-        "tumorSplitReadCount": {
-          "type": "integer",
-          "format": "int32"
-        },
-        "tumorVariantCount": {
-          "type": "integer",
-          "format": "int32"
-        },
-        "uniquePatientKey": {
-          "type": "string"
-        },
-        "uniqueSampleKey": {
-          "type": "string"
-        },
-        "variantClass": {
+        "status": {
           "type": "string"
         }
       },
-      "title": "StructuralVariant"
-    },
-    "StructuralVariantFilter": {
-      "type": "object",
-      "properties": {
-        "entrezGeneIds": {
-          "type": "array",
-          "items": {
-            "type": "integer",
-            "format": "int32",
-            "minimum": 0,
-            "maximum": 10000000
-          }
-        },
-        "molecularProfileIds": {
-          "type": "array",
-          "items": {
-            "type": "string"
-          }
-        },
-        "sampleMolecularIdentifiers": {
-          "type": "array",
-          "items": {
-            "$ref": "#/definitions/SampleMolecularIdentifier"
-          }
-        }
-      },
-      "title": "StructuralVariantFilter"
+      "title": "ServerStatusMessage"
     },
     "StudyViewFilter": {
       "type": "object",
diff --git a/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI.ts b/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI.ts
index b0e40269bbc..ba4a6966c43 100644
--- a/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI.ts
+++ b/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPI.ts
@@ -391,6 +391,32 @@ export type GenomicDataFilter = {
 
         'values': Array < DataFilterValue >
 
+};
+export type Info = {
+    'dbVersion': string
+
+        'gitBranch': string
+
+        'gitCommitId': string
+
+        'gitCommitIdAbbrev': string
+
+        'gitCommitIdDescribe': string
+
+        'gitCommitIdDescribeShort': string
+
+        'gitCommitMessageFull': string
+
+        'gitCommitMessageShort': string
+
+        'gitCommitMessageUserEmail': string
+
+        'gitCommitMessageUserName': string
+
+        'gitDirty': boolean
+
+        'portalVersion': string
+
 };
 export type MolecularDataFilter = {
     'entrezGeneIds': Array < number >
@@ -674,104 +700,8 @@ export type SampleTreatmentRow = {
         'treatment': string
 
 };
-export type StructuralVariant = {
-    'annotation': string
-
-        'breakpointType': string
-
-        'center': string
-
-        'comments': string
-
-        'connectionType': string
-
-        'dnaSupport': string
-
-        'driverFilter': string
-
-        'driverFilterAnn': string
-
-        'driverTiersFilter': string
-
-        'driverTiersFilterAnn': string
-
-        'eventInfo': string
-
-        'externalAnnotation': string
-
-        'length': number
-
-        'molecularProfileId': string
-
-        'ncbiBuild': string
-
-        'normalPairedEndReadCount': number
-
-        'normalReadCount': number
-
-        'normalSplitReadCount': number
-
-        'normalVariantCount': number
-
-        'patientId': string
-
-        'rnaSupport': string
-
-        'sampleId': string
-
-        'site1Chromosome': string
-
-        'site1Description': string
-
-        'site1EnsemblTranscriptId': string
-
-        'site1EntrezGeneId': number
-
-        'site1Exon': number
-
-        'site1HugoSymbol': string
-
-        'site1Position': number
-
-        'site2Chromosome': string
-
-        'site2Description': string
-
-        'site2EffectOnFrame': string
-
-        'site2EnsemblTranscriptId': string
-
-        'site2EntrezGeneId': number
-
-        'site2Exon': number
-
-        'site2HugoSymbol': string
-
-        'site2Position': number
-
-        'studyId': string
-
-        'tumorPairedEndReadCount': number
-
-        'tumorReadCount': number
-
-        'tumorSplitReadCount': number
-
-        'tumorVariantCount': number
-
-        'uniquePatientKey': string
-
-        'uniqueSampleKey': string
-
-        'variantClass': string
-
-};
-export type StructuralVariantFilter = {
-    'entrezGeneIds': Array < number >
-
-        'molecularProfileIds': Array < string >
-
-        'sampleMolecularIdentifiers': Array < SampleMolecularIdentifier >
+export type ServerStatusMessage = {
+    'status': string
 
 };
 export type StudyViewFilter = {
@@ -1866,6 +1796,279 @@ export default class CBioPortalAPI {
             return response.body;
         });
     };
+    getGenericAssayDataInMolecularProfileUsingGETURL(parameters: {
+        'genericAssayStableId': string,
+        'molecularProfileId': string,
+        'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
+        $queryParameters ? : any
+    }): string {
+        let queryParameters: any = {};
+        let path = '/generic-assay-data/{molecularProfileId}/generic-assay/{genericAssayStableId}';
+
+        path = path.replace('{genericAssayStableId}', parameters['genericAssayStableId'] + '');
+
+        path = path.replace('{molecularProfileId}', parameters['molecularProfileId'] + '');
+        if (parameters['projection'] !== undefined) {
+            queryParameters['projection'] = parameters['projection'];
+        }
+
+        if (parameters.$queryParameters) {
+            Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
+                var parameter = parameters.$queryParameters[parameterName];
+                queryParameters[parameterName] = parameter;
+            });
+        }
+        let keys = Object.keys(queryParameters);
+        return this.domain + path + (keys.length > 0 ? '?' + (keys.map(key => key + '=' + encodeURIComponent(queryParameters[key])).join('&')) : '');
+    };
+
+    /**
+     * Get generic_assay_data in a molecular profile
+     * @method
+     * @name CBioPortalAPI#getGenericAssayDataInMolecularProfileUsingGET
+     * @param {string} genericAssayStableId - Generic Assay stable ID
+     * @param {string} molecularProfileId - Molecular Profile ID
+     * @param {string} projection - Level of detail of the response
+     */
+    getGenericAssayDataInMolecularProfileUsingGETWithHttpInfo(parameters: {
+        'genericAssayStableId': string,
+        'molecularProfileId': string,
+        'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
+        $queryParameters ? : any,
+        $domain ? : string
+    }): Promise < request.Response > {
+        const domain = parameters.$domain ? parameters.$domain : this.domain;
+        const errorHandlers = this.errorHandlers;
+        const request = this.request;
+        let path = '/generic-assay-data/{molecularProfileId}/generic-assay/{genericAssayStableId}';
+        let body: any;
+        let queryParameters: any = {};
+        let headers: any = {};
+        let form: any = {};
+        return new Promise(function(resolve, reject) {
+            headers['Accept'] = 'application/json';
+
+            path = path.replace('{genericAssayStableId}', parameters['genericAssayStableId'] + '');
+
+            if (parameters['genericAssayStableId'] === undefined) {
+                reject(new Error('Missing required  parameter: genericAssayStableId'));
+                return;
+            }
+
+            path = path.replace('{molecularProfileId}', parameters['molecularProfileId'] + '');
+
+            if (parameters['molecularProfileId'] === undefined) {
+                reject(new Error('Missing required  parameter: molecularProfileId'));
+                return;
+            }
+
+            if (parameters['projection'] !== undefined) {
+                queryParameters['projection'] = parameters['projection'];
+            }
+
+            if (parameters.$queryParameters) {
+                Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
+                    var parameter = parameters.$queryParameters[parameterName];
+                    queryParameters[parameterName] = parameter;
+                });
+            }
+
+            request('GET', domain + path, body, headers, queryParameters, form, reject, resolve, errorHandlers);
+
+        });
+    };
+
+    /**
+     * Get generic_assay_data in a molecular profile
+     * @method
+     * @name CBioPortalAPI#getGenericAssayDataInMolecularProfileUsingGET
+     * @param {string} genericAssayStableId - Generic Assay stable ID
+     * @param {string} molecularProfileId - Molecular Profile ID
+     * @param {string} projection - Level of detail of the response
+     */
+    getGenericAssayDataInMolecularProfileUsingGET(parameters: {
+            'genericAssayStableId': string,
+            'molecularProfileId': string,
+            'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
+            $queryParameters ? : any,
+            $domain ? : string
+        }): Promise < Array < GenericAssayData >
+        > {
+            return this.getGenericAssayDataInMolecularProfileUsingGETWithHttpInfo(parameters).then(function(response: request.Response) {
+                return response.body;
+            });
+        };
+    getGenericAssayMeta_gaUsingGETURL(parameters: {
+        'genericAssayStableId' ? : string,
+        'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
+        $queryParameters ? : any
+    }): string {
+        let queryParameters: any = {};
+        let path = '/generic-assay-meta/generic-assay/{genericAssayStableId}';
+
+        path = path.replace('{genericAssayStableId}', parameters['genericAssayStableId'] + '');
+        if (parameters['projection'] !== undefined) {
+            queryParameters['projection'] = parameters['projection'];
+        }
+
+        if (parameters.$queryParameters) {
+            Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
+                var parameter = parameters.$queryParameters[parameterName];
+                queryParameters[parameterName] = parameter;
+            });
+        }
+        let keys = Object.keys(queryParameters);
+        return this.domain + path + (keys.length > 0 ? '?' + (keys.map(key => key + '=' + encodeURIComponent(queryParameters[key])).join('&')) : '');
+    };
+
+    /**
+     * Fetch meta data for generic-assay by ID
+     * @method
+     * @name CBioPortalAPI#getGenericAssayMeta_gaUsingGET
+     * @param {string} genericAssayStableId - Generic Assay stable ID
+     * @param {string} projection - Level of detail of the response
+     */
+    getGenericAssayMeta_gaUsingGETWithHttpInfo(parameters: {
+        'genericAssayStableId' ? : string,
+        'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
+        $queryParameters ? : any,
+            $domain ? : string
+    }): Promise < request.Response > {
+        const domain = parameters.$domain ? parameters.$domain : this.domain;
+        const errorHandlers = this.errorHandlers;
+        const request = this.request;
+        let path = '/generic-assay-meta/generic-assay/{genericAssayStableId}';
+        let body: any;
+        let queryParameters: any = {};
+        let headers: any = {};
+        let form: any = {};
+        return new Promise(function(resolve, reject) {
+            headers['Accept'] = 'application/json';
+
+            path = path.replace('{genericAssayStableId}', parameters['genericAssayStableId'] + '');
+
+            if (parameters['projection'] !== undefined) {
+                queryParameters['projection'] = parameters['projection'];
+            }
+
+            if (parameters.$queryParameters) {
+                Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
+                    var parameter = parameters.$queryParameters[parameterName];
+                    queryParameters[parameterName] = parameter;
+                });
+            }
+
+            request('GET', domain + path, body, headers, queryParameters, form, reject, resolve, errorHandlers);
+
+        });
+    };
+
+    /**
+     * Fetch meta data for generic-assay by ID
+     * @method
+     * @name CBioPortalAPI#getGenericAssayMeta_gaUsingGET
+     * @param {string} genericAssayStableId - Generic Assay stable ID
+     * @param {string} projection - Level of detail of the response
+     */
+    getGenericAssayMeta_gaUsingGET(parameters: {
+            'genericAssayStableId' ? : string,
+            'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
+            $queryParameters ? : any,
+                $domain ? : string
+        }): Promise < Array < GenericAssayMeta >
+        > {
+            return this.getGenericAssayMeta_gaUsingGETWithHttpInfo(parameters).then(function(response: request.Response) {
+                return response.body;
+            });
+        };
+    getGenericAssayMetaUsingGETURL(parameters: {
+        'molecularProfileId': string,
+        'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
+        $queryParameters ? : any
+    }): string {
+        let queryParameters: any = {};
+        let path = '/generic-assay-meta/{molecularProfileId}';
+
+        path = path.replace('{molecularProfileId}', parameters['molecularProfileId'] + '');
+        if (parameters['projection'] !== undefined) {
+            queryParameters['projection'] = parameters['projection'];
+        }
+
+        if (parameters.$queryParameters) {
+            Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
+                var parameter = parameters.$queryParameters[parameterName];
+                queryParameters[parameterName] = parameter;
+            });
+        }
+        let keys = Object.keys(queryParameters);
+        return this.domain + path + (keys.length > 0 ? '?' + (keys.map(key => key + '=' + encodeURIComponent(queryParameters[key])).join('&')) : '');
+    };
+
+    /**
+     * Fetch meta data for generic-assay by ID
+     * @method
+     * @name CBioPortalAPI#getGenericAssayMetaUsingGET
+     * @param {string} molecularProfileId - Molecular Profile ID
+     * @param {string} projection - Level of detail of the response
+     */
+    getGenericAssayMetaUsingGETWithHttpInfo(parameters: {
+        'molecularProfileId': string,
+        'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
+        $queryParameters ? : any,
+        $domain ? : string
+    }): Promise < request.Response > {
+        const domain = parameters.$domain ? parameters.$domain : this.domain;
+        const errorHandlers = this.errorHandlers;
+        const request = this.request;
+        let path = '/generic-assay-meta/{molecularProfileId}';
+        let body: any;
+        let queryParameters: any = {};
+        let headers: any = {};
+        let form: any = {};
+        return new Promise(function(resolve, reject) {
+            headers['Accept'] = 'application/json';
+
+            path = path.replace('{molecularProfileId}', parameters['molecularProfileId'] + '');
+
+            if (parameters['molecularProfileId'] === undefined) {
+                reject(new Error('Missing required  parameter: molecularProfileId'));
+                return;
+            }
+
+            if (parameters['projection'] !== undefined) {
+                queryParameters['projection'] = parameters['projection'];
+            }
+
+            if (parameters.$queryParameters) {
+                Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
+                    var parameter = parameters.$queryParameters[parameterName];
+                    queryParameters[parameterName] = parameter;
+                });
+            }
+
+            request('GET', domain + path, body, headers, queryParameters, form, reject, resolve, errorHandlers);
+
+        });
+    };
+
+    /**
+     * Fetch meta data for generic-assay by ID
+     * @method
+     * @name CBioPortalAPI#getGenericAssayMetaUsingGET
+     * @param {string} molecularProfileId - Molecular Profile ID
+     * @param {string} projection - Level of detail of the response
+     */
+    getGenericAssayMetaUsingGET(parameters: {
+            'molecularProfileId': string,
+            'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
+            $queryParameters ? : any,
+            $domain ? : string
+        }): Promise < Array < GenericAssayMeta >
+        > {
+            return this.getGenericAssayMetaUsingGETWithHttpInfo(parameters).then(function(response: request.Response) {
+                return response.body;
+            });
+        };
     fetchGenericAssayDataInMultipleMolecularProfilesUsingPOSTURL(parameters: {
         'genericAssayDataMultipleStudyFilter': GenericAssayDataMultipleStudyFilter,
         'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
@@ -2059,7 +2262,7 @@ export default class CBioPortalAPI {
                 return response.body;
             });
         };
-    fetchGenericAssayMetaDataUsingPOSTURL(parameters: {
+    fetchGenericAssayMetaUsingPOSTURL(parameters: {
         'genericAssayMetaFilter': GenericAssayMetaFilter,
         'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
         $queryParameters ? : any
@@ -2084,11 +2287,11 @@ export default class CBioPortalAPI {
     /**
      * Fetch meta data for generic-assay by ID
      * @method
-     * @name CBioPortalAPI#fetchGenericAssayMetaDataUsingPOST
+     * @name CBioPortalAPI#fetchGenericAssayMetaUsingPOST
      * @param {} genericAssayMetaFilter - List of Molecular Profile ID or List of Stable ID
      * @param {string} projection - Level of detail of the response
      */
-    fetchGenericAssayMetaDataUsingPOSTWithHttpInfo(parameters: {
+    fetchGenericAssayMetaUsingPOSTWithHttpInfo(parameters: {
         'genericAssayMetaFilter': GenericAssayMetaFilter,
         'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
         $queryParameters ? : any,
@@ -2134,18 +2337,18 @@ export default class CBioPortalAPI {
     /**
      * Fetch meta data for generic-assay by ID
      * @method
-     * @name CBioPortalAPI#fetchGenericAssayMetaDataUsingPOST
+     * @name CBioPortalAPI#fetchGenericAssayMetaUsingPOST
      * @param {} genericAssayMetaFilter - List of Molecular Profile ID or List of Stable ID
      * @param {string} projection - Level of detail of the response
      */
-    fetchGenericAssayMetaDataUsingPOST(parameters: {
+    fetchGenericAssayMetaUsingPOST(parameters: {
             'genericAssayMetaFilter': GenericAssayMetaFilter,
             'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
             $queryParameters ? : any,
             $domain ? : string
         }): Promise < Array < GenericAssayMeta >
         > {
-            return this.fetchGenericAssayMetaDataUsingPOSTWithHttpInfo(parameters).then(function(response: request.Response) {
+            return this.fetchGenericAssayMetaUsingPOSTWithHttpInfo(parameters).then(function(response: request.Response) {
                 return response.body;
             });
         };
@@ -2554,6 +2757,128 @@ export default class CBioPortalAPI {
                 return response.body;
             });
         };
+    getServerStatusUsingGETURL(parameters: {
+        $queryParameters ? : any
+    }): string {
+        let queryParameters: any = {};
+        let path = '/health';
+
+        if (parameters.$queryParameters) {
+            Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
+                var parameter = parameters.$queryParameters[parameterName];
+                queryParameters[parameterName] = parameter;
+            });
+        }
+        let keys = Object.keys(queryParameters);
+        return this.domain + path + (keys.length > 0 ? '?' + (keys.map(key => key + '=' + encodeURIComponent(queryParameters[key])).join('&')) : '');
+    };
+
+    /**
+     * Get the running status of the server
+     * @method
+     * @name CBioPortalAPI#getServerStatusUsingGET
+     */
+    getServerStatusUsingGETWithHttpInfo(parameters: {
+        $queryParameters ? : any,
+            $domain ? : string
+    }): Promise < request.Response > {
+        const domain = parameters.$domain ? parameters.$domain : this.domain;
+        const errorHandlers = this.errorHandlers;
+        const request = this.request;
+        let path = '/health';
+        let body: any;
+        let queryParameters: any = {};
+        let headers: any = {};
+        let form: any = {};
+        return new Promise(function(resolve, reject) {
+            headers['Accept'] = 'application/json';
+
+            if (parameters.$queryParameters) {
+                Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
+                    var parameter = parameters.$queryParameters[parameterName];
+                    queryParameters[parameterName] = parameter;
+                });
+            }
+
+            request('GET', domain + path, body, headers, queryParameters, form, reject, resolve, errorHandlers);
+
+        });
+    };
+
+    /**
+     * Get the running status of the server
+     * @method
+     * @name CBioPortalAPI#getServerStatusUsingGET
+     */
+    getServerStatusUsingGET(parameters: {
+        $queryParameters ? : any,
+            $domain ? : string
+    }): Promise < ServerStatusMessage > {
+        return this.getServerStatusUsingGETWithHttpInfo(parameters).then(function(response: request.Response) {
+            return response.body;
+        });
+    };
+    getInfoUsingGETURL(parameters: {
+        $queryParameters ? : any
+    }): string {
+        let queryParameters: any = {};
+        let path = '/info';
+
+        if (parameters.$queryParameters) {
+            Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
+                var parameter = parameters.$queryParameters[parameterName];
+                queryParameters[parameterName] = parameter;
+            });
+        }
+        let keys = Object.keys(queryParameters);
+        return this.domain + path + (keys.length > 0 ? '?' + (keys.map(key => key + '=' + encodeURIComponent(queryParameters[key])).join('&')) : '');
+    };
+
+    /**
+     * Get information about the running instance
+     * @method
+     * @name CBioPortalAPI#getInfoUsingGET
+     */
+    getInfoUsingGETWithHttpInfo(parameters: {
+        $queryParameters ? : any,
+            $domain ? : string
+    }): Promise < request.Response > {
+        const domain = parameters.$domain ? parameters.$domain : this.domain;
+        const errorHandlers = this.errorHandlers;
+        const request = this.request;
+        let path = '/info';
+        let body: any;
+        let queryParameters: any = {};
+        let headers: any = {};
+        let form: any = {};
+        return new Promise(function(resolve, reject) {
+            headers['Accept'] = 'application/json';
+
+            if (parameters.$queryParameters) {
+                Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
+                    var parameter = parameters.$queryParameters[parameterName];
+                    queryParameters[parameterName] = parameter;
+                });
+            }
+
+            request('GET', domain + path, body, headers, queryParameters, form, reject, resolve, errorHandlers);
+
+        });
+    };
+
+    /**
+     * Get information about the running instance
+     * @method
+     * @name CBioPortalAPI#getInfoUsingGET
+     */
+    getInfoUsingGET(parameters: {
+        $queryParameters ? : any,
+            $domain ? : string
+    }): Promise < Info > {
+        return this.getInfoUsingGETWithHttpInfo(parameters).then(function(response: request.Response) {
+            return response.body;
+        });
+    };
     fetchMolecularDataInMultipleMolecularProfilesUsingPOSTURL(parameters: {
         'molecularDataMultipleStudyFilter': MolecularDataMultipleStudyFilter,
         'projection' ? : "ID" | "SUMMARY" | "DETAILED" | "META",
@@ -4767,134 +5092,6 @@ export default class CBioPortalAPI {
                 return response.body;
             });
         };
-    fetchStructuralVariantsUsingPOSTURL(parameters: {
-        'entrezGeneIds' ? : Array < number > ,
-            'molecularProfileIds' ? : Array < string > ,
-            'sampleMolecularIdentifiers0MolecularProfileId' ? : string,
-            'sampleMolecularIdentifiers0SampleId' ? : string,
-            'structuralVariantFilter': StructuralVariantFilter,
-            $queryParameters ? : any
-    }): string {
-        let queryParameters: any = {};
-        let path = '/structural-variant/fetch';
-        if (parameters['entrezGeneIds'] !== undefined) {
-            queryParameters['entrezGeneIds'] = parameters['entrezGeneIds'];
-        }
-
-        if (parameters['molecularProfileIds'] !== undefined) {
-            queryParameters['molecularProfileIds'] = parameters['molecularProfileIds'];
-        }
-
-        if (parameters['sampleMolecularIdentifiers0MolecularProfileId'] !== undefined) {
-            queryParameters['sampleMolecularIdentifiers[0].molecularProfileId'] = parameters['sampleMolecularIdentifiers0MolecularProfileId'];
-        }
-
-        if (parameters['sampleMolecularIdentifiers0SampleId'] !== undefined) {
-            queryParameters['sampleMolecularIdentifiers[0].sampleId'] = parameters['sampleMolecularIdentifiers0SampleId'];
-        }
-
-        if (parameters.$queryParameters) {
-            Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
-                var parameter = parameters.$queryParameters[parameterName];
-                queryParameters[parameterName] = parameter;
-            });
-        }
-        let keys = Object.keys(queryParameters);
-        return this.domain + path + (keys.length > 0 ? '?' + (keys.map(key => key + '=' + encodeURIComponent(queryParameters[key])).join('&')) : '');
-    };
-
-    /**
-     * Fetch structural variants for entrezGeneIds and molecularProfileIds or sampleMolecularIdentifiers
-     * @method
-     * @name CBioPortalAPI#fetchStructuralVariantsUsingPOST
-     * @param {array} entrezGeneIds - A web service for supplying JSON formatted data to cBioPortal clients. Please note that this API is currently in beta and subject to change.
-     * @param {array} molecularProfileIds - A web service for supplying JSON formatted data to cBioPortal clients. Please note that this API is currently in beta and subject to change.
-     * @param {string} sampleMolecularIdentifiers0MolecularProfileId - A web service for supplying JSON formatted data to cBioPortal clients. Please note that this API is currently in beta and subject to change.
-     * @param {string} sampleMolecularIdentifiers0SampleId - A web service for supplying JSON formatted data to cBioPortal clients. Please note that this API is currently in beta and subject to change.
-     * @param {} structuralVariantFilter - List of entrezGeneIds and molecularProfileIds or sampleMolecularIdentifiers
-     */
-    fetchStructuralVariantsUsingPOSTWithHttpInfo(parameters: {
-        'entrezGeneIds' ? : Array < number > ,
-            'molecularProfileIds' ? : Array < string > ,
-            'sampleMolecularIdentifiers0MolecularProfileId' ? : string,
-            'sampleMolecularIdentifiers0SampleId' ? : string,
-            'structuralVariantFilter': StructuralVariantFilter,
-            $queryParameters ? : any,
-            $domain ? : string
-    }): Promise < request.Response > {
-        const domain = parameters.$domain ? parameters.$domain : this.domain;
-        const errorHandlers = this.errorHandlers;
-        const request = this.request;
-        let path = '/structural-variant/fetch';
-        let body: any;
-        let queryParameters: any = {};
-        let headers: any = {};
-        let form: any = {};
-        return new Promise(function(resolve, reject) {
-            headers['Accept'] = 'application/json';
-            headers['Content-Type'] = 'application/json';
-
-            if (parameters['entrezGeneIds'] !== undefined) {
-                queryParameters['entrezGeneIds'] = parameters['entrezGeneIds'];
-            }
-
-            if (parameters['molecularProfileIds'] !== undefined) {
-                queryParameters['molecularProfileIds'] = parameters['molecularProfileIds'];
-            }
-
-            if (parameters['sampleMolecularIdentifiers0MolecularProfileId'] !== undefined) {
-                queryParameters['sampleMolecularIdentifiers[0].molecularProfileId'] = parameters['sampleMolecularIdentifiers0MolecularProfileId'];
-            }
-
-            if (parameters['sampleMolecularIdentifiers0SampleId'] !== undefined) {
-                queryParameters['sampleMolecularIdentifiers[0].sampleId'] = parameters['sampleMolecularIdentifiers0SampleId'];
-            }
-
-            if (parameters['structuralVariantFilter'] !== undefined) {
-                body = parameters['structuralVariantFilter'];
-            }
-
-            if (parameters['structuralVariantFilter'] === undefined) {
-                reject(new Error('Missing required  parameter: structuralVariantFilter'));
-                return;
-            }
-
-            if (parameters.$queryParameters) {
-                Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
-                    var parameter = parameters.$queryParameters[parameterName];
-                    queryParameters[parameterName] = parameter;
-                });
-            }
-
-            request('POST', domain + path, body, headers, queryParameters, form, reject, resolve, errorHandlers);
-
-        });
-    };
-
-    /**
-     * Fetch structural variants for entrezGeneIds and molecularProfileIds or sampleMolecularIdentifiers
-     * @method
-     * @name CBioPortalAPI#fetchStructuralVariantsUsingPOST
-     * @param {array} entrezGeneIds - A web service for supplying JSON formatted data to cBioPortal clients. Please note that this API is currently in beta and subject to change.
-     * @param {array} molecularProfileIds - A web service for supplying JSON formatted data to cBioPortal clients. Please note that this API is currently in beta and subject to change.
-     * @param {string} sampleMolecularIdentifiers0MolecularProfileId - A web service for supplying JSON formatted data to cBioPortal clients. Please note that this API is currently in beta and subject to change.
-     * @param {string} sampleMolecularIdentifiers0SampleId - A web service for supplying JSON formatted data to cBioPortal clients. Please note that this API is currently in beta and subject to change.
-     * @param {} structuralVariantFilter - List of entrezGeneIds and molecularProfileIds or sampleMolecularIdentifiers
-     */
-    fetchStructuralVariantsUsingPOST(parameters: {
-            'entrezGeneIds' ? : Array < number > ,
-                'molecularProfileIds' ? : Array < string > ,
-                'sampleMolecularIdentifiers0MolecularProfileId' ? : string,
-                'sampleMolecularIdentifiers0SampleId' ? : string,
-                'structuralVariantFilter': StructuralVariantFilter,
-                $queryParameters ? : any,
-                $domain ? : string
-        }): Promise < Array < StructuralVariant >
-        > {
-            return this.fetchStructuralVariantsUsingPOSTWithHttpInfo(parameters).then(function(response: request.Response) {
-                return response.body;
-            });
-        };
     getAllStudiesUsingGETURL(parameters: {
         'authenticated' ? : boolean,
         'authorities0Authority' ? : string,
diff --git a/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPIInternal-docs.json b/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPIInternal-docs.json
index 1dfa4518359..ff1467894f9 100644
--- a/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPIInternal-docs.json
+++ b/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPIInternal-docs.json
@@ -75,10 +75,6 @@
       "name": "Gene Sets",
       "description": " "
     },
-    {
-      "name": "Info",
-      "description": " "
-    },
     {
       "name": "Mutation Spectrums",
       "description": " "
@@ -99,10 +95,6 @@
       "name": "Resource Definitions",
       "description": " "
     },
-    {
-      "name": "Server running status",
-      "description": "This end point does not require authentication"
-    },
     {
       "name": "Significant Copy Number Regions",
       "description": " "
@@ -111,6 +103,10 @@
       "name": "Significantly Mutated Genes",
       "description": " "
     },
+    {
+      "name": "Structural Variants",
+      "description": " "
+    },
     {
       "name": "Study View",
       "description": " "
@@ -1746,48 +1742,6 @@
         "deprecated": false
       }
     },
-    "/health": {
-      "get": {
-        "tags": [
-          "Server running status"
-        ],
-        "summary": "Get the running status of the server",
-        "operationId": "getServerStatusUsingGET",
-        "produces": [
-          "application/json"
-        ],
-        "responses": {
-          "200": {
-            "description": "OK",
-            "schema": {
-              "$ref": "#/definitions/ServerStatusMessage"
-            }
-          }
-        },
-        "deprecated": false
-      }
-    },
-    "/info": {
-      "get": {
-        "tags": [
-          "Info"
-        ],
-        "summary": "Get information about the running instance",
-        "operationId": "getInfoUsingGET",
-        "produces": [
-          "application/json"
-        ],
-        "responses": {
-          "200": {
-            "description": "OK",
-            "schema": {
-              "$ref": "#/definitions/Info"
-            }
-          }
-        },
-        "deprecated": false
-      }
-    },
     "/molecular-profile-sample-counts/fetch": {
       "post": {
         "tags": [
@@ -2380,6 +2334,81 @@
         "deprecated": false
       }
     },
+    "/structural-variant/fetch": {
+      "post": {
+        "tags": [
+          "Structural Variants"
+        ],
+        "summary": "Fetch structural variants for entrezGeneIds and molecularProfileIds or sampleMolecularIdentifiers",
+        "operationId": "fetchStructuralVariantsUsingPOST",
+        "consumes": [
+          "application/json"
+        ],
+        "produces": [
+          "application/json"
+        ],
+        "parameters": [
+          {
+            "name": "entrezGeneIds",
+            "in": "query",
+            "required": false,
+            "type": "array",
+            "items": {
+              "type": "integer",
+              "format": "int32"
+            },
+            "collectionFormat": "multi",
+            "maximum": 10000000,
+            "minimum": 0
+          },
+          {
+            "name": "molecularProfileIds",
+            "in": "query",
+            "required": false,
+            "type": "array",
+            "items": {
+              "type": "string"
+            },
+            "collectionFormat": "multi",
+            "maximum": 10000000,
+            "minimum": 0
+          },
+          {
+            "name": "sampleMolecularIdentifiers[0].molecularProfileId",
+            "in": "query",
+            "required": false,
+            "type": "string"
+          },
+          {
+            "name": "sampleMolecularIdentifiers[0].sampleId",
+            "in": "query",
+            "required": false,
+            "type": "string"
+          },
+          {
+            "in": "body",
+            "name": "structuralVariantFilter",
+            "description": "List of entrezGeneIds and molecularProfileIds or sampleMolecularIdentifiers",
+            "required": true,
+            "schema": {
+              "$ref": "#/definitions/StructuralVariantFilter"
+            }
+          }
+        ],
+        "responses": {
+          "200": {
+            "description": "OK",
+            "schema": {
+              "type": "array",
+              "items": {
+                "$ref": "#/definitions/StructuralVariant"
+              }
+            }
+          }
+        },
+        "deprecated": false
+      }
+    },
     "/structuralvariant-genes/fetch": {
       "post": {
         "tags": [
@@ -4786,62 +4815,6 @@
       },
       "title": "GroupStatistics"
     },
-    "Info": {
-      "type": "object",
-      "required": [
-        "dbVersion",
-        "gitBranch",
-        "gitCommitId",
-        "gitCommitIdAbbrev",
-        "gitCommitIdDescribe",
-        "gitCommitIdDescribeShort",
-        "gitCommitMessageFull",
-        "gitCommitMessageShort",
-        "gitCommitMessageUserEmail",
-        "gitCommitMessageUserName",
-        "gitDirty",
-        "portalVersion"
-      ],
-      "properties": {
-        "dbVersion": {
-          "type": "string"
-        },
-        "gitBranch": {
-          "type": "string"
-        },
-        "gitCommitId": {
-          "type": "string"
-        },
-        "gitCommitIdAbbrev": {
-          "type": "string"
-        },
-        "gitCommitIdDescribe": {
-          "type": "string"
-        },
-        "gitCommitIdDescribeShort": {
-          "type": "string"
-        },
-        "gitCommitMessageFull": {
-          "type": "string"
-        },
-        "gitCommitMessageShort": {
-          "type": "string"
-        },
-        "gitCommitMessageUserEmail": {
-          "type": "string"
-        },
-        "gitCommitMessageUserName": {
-          "type": "string"
-        },
-        "gitDirty": {
-          "type": "boolean"
-        },
-        "portalVersion": {
-          "type": "string"
-        }
-      },
-      "title": "Info"
-    },
     "MolecularProfileCaseIdentifier": {
       "type": "object",
       "required": [
@@ -5294,6 +5267,18 @@
       },
       "title": "SampleIdentifier"
     },
+    "SampleMolecularIdentifier": {
+      "type": "object",
+      "properties": {
+        "molecularProfileId": {
+          "type": "string"
+        },
+        "sampleId": {
+          "type": "string"
+        }
+      },
+      "title": "SampleMolecularIdentifier"
+    },
     "SampleTreatmentFilter": {
       "type": "object",
       "properties": {
@@ -5310,14 +5295,188 @@
       },
       "title": "SampleTreatmentFilter"
     },
-    "ServerStatusMessage": {
+    "StructuralVariant": {
       "type": "object",
       "properties": {
-        "status": {
+        "annotation": {
+          "type": "string"
+        },
+        "breakpointType": {
+          "type": "string"
+        },
+        "center": {
+          "type": "string"
+        },
+        "comments": {
+          "type": "string"
+        },
+        "connectionType": {
+          "type": "string"
+        },
+        "dnaSupport": {
+          "type": "string"
+        },
+        "driverFilter": {
+          "type": "string"
+        },
+        "driverFilterAnn": {
+          "type": "string"
+        },
+        "driverTiersFilter": {
+          "type": "string"
+        },
+        "driverTiersFilterAnn": {
+          "type": "string"
+        },
+        "eventInfo": {
+          "type": "string"
+        },
+        "externalAnnotation": {
+          "type": "string"
+        },
+        "length": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "molecularProfileId": {
+          "type": "string"
+        },
+        "ncbiBuild": {
+          "type": "string"
+        },
+        "normalPairedEndReadCount": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "normalReadCount": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "normalSplitReadCount": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "normalVariantCount": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "patientId": {
+          "type": "string"
+        },
+        "rnaSupport": {
+          "type": "string"
+        },
+        "sampleId": {
+          "type": "string"
+        },
+        "site1Chromosome": {
+          "type": "string"
+        },
+        "site1Description": {
+          "type": "string"
+        },
+        "site1EnsemblTranscriptId": {
+          "type": "string"
+        },
+        "site1EntrezGeneId": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "site1Exon": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "site1HugoSymbol": {
           "type": "string"
+        },
+        "site1Position": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "site2Chromosome": {
+          "type": "string"
+        },
+        "site2Description": {
+          "type": "string"
+        },
+        "site2EffectOnFrame": {
+          "type": "string"
+        },
+        "site2EnsemblTranscriptId": {
+          "type": "string"
+        },
+        "site2EntrezGeneId": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "site2Exon": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "site2HugoSymbol": {
+          "type": "string"
+        },
+        "site2Position": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "studyId": {
+          "type": "string"
+        },
+        "tumorPairedEndReadCount": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "tumorReadCount": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "tumorSplitReadCount": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "tumorVariantCount": {
+          "type": "integer",
+          "format": "int32"
+        },
+        "uniquePatientKey": {
+          "type": "string"
+        },
+        "uniqueSampleKey": {
+          "type": "string"
+        },
+        "variantClass": {
+          "type": "string"
+        }
+      },
+      "title": "StructuralVariant"
+    },
+    "StructuralVariantFilter": {
+      "type": "object",
+      "properties": {
+        "entrezGeneIds": {
+          "type": "array",
+          "items": {
+            "type": "integer",
+            "format": "int32",
+            "minimum": 0,
+            "maximum": 10000000
+          }
+        },
+        "molecularProfileIds": {
+          "type": "array",
+          "items": {
+            "type": "string"
+          }
+        },
+        "sampleMolecularIdentifiers": {
+          "type": "array",
+          "items": {
+            "$ref": "#/definitions/SampleMolecularIdentifier"
+          }
         }
       },
-      "title": "ServerStatusMessage"
+      "title": "StructuralVariantFilter"
     },
     "StudyViewFilter": {
       "type": "object",
diff --git a/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPIInternal.ts b/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPIInternal.ts
index d8b25ecb701..2af7e8dfa31 100644
--- a/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPIInternal.ts
+++ b/packages/cbioportal-ts-api-client/src/generated/CBioPortalAPIInternal.ts
@@ -641,32 +641,6 @@ export type GroupStatistics = {
 
         'standardDeviation': number
 
-};
-export type Info = {
-    'dbVersion': string
-
-        'gitBranch': string
-
-        'gitCommitId': string
-
-        'gitCommitIdAbbrev': string
-
-        'gitCommitIdDescribe': string
-
-        'gitCommitIdDescribeShort': string
-
-        'gitCommitMessageFull': string
-
-        'gitCommitMessageShort': string
-
-        'gitCommitMessageUserEmail': string
-
-        'gitCommitMessageUserName': string
-
-        'gitDirty': boolean
-
-        'portalVersion': string
-
 };
 export type MolecularProfileCaseIdentifier = {
     'caseId': string
@@ -859,6 +833,12 @@ export type SampleIdentifier = {
 
         'studyId': string
 
+};
+export type SampleMolecularIdentifier = {
+    'molecularProfileId': string
+
+        'sampleId': string
+
 };
 export type SampleTreatmentFilter = {
     'time': "Pre" | "Post"
@@ -866,8 +846,104 @@ export type SampleTreatmentFilter = {
         'treatment': string
 
 };
-export type ServerStatusMessage = {
-    'status': string
+export type StructuralVariant = {
+    'annotation': string
+
+        'breakpointType': string
+
+        'center': string
+
+        'comments': string
+
+        'connectionType': string
+
+        'dnaSupport': string
+
+        'driverFilter': string
+
+        'driverFilterAnn': string
+
+        'driverTiersFilter': string
+
+        'driverTiersFilterAnn': string
+
+        'eventInfo': string
+
+        'externalAnnotation': string
+
+        'length': number
+
+        'molecularProfileId': string
+
+        'ncbiBuild': string
+
+        'normalPairedEndReadCount': number
+
+        'normalReadCount': number
+
+        'normalSplitReadCount': number
+
+        'normalVariantCount': number
+
+        'patientId': string
+
+        'rnaSupport': string
+
+        'sampleId': string
+
+        'site1Chromosome': string
+
+        'site1Description': string
+
+        'site1EnsemblTranscriptId': string
+
+        'site1EntrezGeneId': number
+
+        'site1Exon': number
+
+        'site1HugoSymbol': string
+
+        'site1Position': number
+
+        'site2Chromosome': string
+
+        'site2Description': string
+
+        'site2EffectOnFrame': string
+
+        'site2EnsemblTranscriptId': string
+
+        'site2EntrezGeneId': number
+
+        'site2Exon': number
+
+        'site2HugoSymbol': string
+
+        'site2Position': number
+
+        'studyId': string
+
+        'tumorPairedEndReadCount': number
+
+        'tumorReadCount': number
+
+        'tumorSplitReadCount': number
+
+        'tumorVariantCount': number
+
+        'uniquePatientKey': string
+
+        'uniqueSampleKey': string
+
+        'variantClass': string
+
+};
+export type StructuralVariantFilter = {
+    'entrezGeneIds': Array < number >
+
+        'molecularProfileIds': Array < string >
+
+        'sampleMolecularIdentifiers': Array < SampleMolecularIdentifier >
 
 };
 export type StudyViewFilter = {
@@ -4117,128 +4193,6 @@ export default class CBioPortalAPIInternal {
                 return response.body;
             });
         };
-    getServerStatusUsingGETURL(parameters: {
-        $queryParameters ? : any
-    }): string {
-        let queryParameters: any = {};
-        let path = '/health';
-
-        if (parameters.$queryParameters) {
-            Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
-                var parameter = parameters.$queryParameters[parameterName];
-                queryParameters[parameterName] = parameter;
-            });
-        }
-        let keys = Object.keys(queryParameters);
-        return this.domain + path + (keys.length > 0 ? '?' + (keys.map(key => key + '=' + encodeURIComponent(queryParameters[key])).join('&')) : '');
-    };
-
-    /**
-     * Get the running status of the server
-     * @method
-     * @name CBioPortalAPIInternal#getServerStatusUsingGET
-     */
-    getServerStatusUsingGETWithHttpInfo(parameters: {
-        $queryParameters ? : any,
-            $domain ? : string
-    }): Promise < request.Response > {
-        const domain = parameters.$domain ? parameters.$domain : this.domain;
-        const errorHandlers = this.errorHandlers;
-        const request = this.request;
-        let path = '/health';
-        let body: any;
-        let queryParameters: any = {};
-        let headers: any = {};
-        let form: any = {};
-        return new Promise(function(resolve, reject) {
-            headers['Accept'] = 'application/json';
-
-            if (parameters.$queryParameters) {
-                Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
-                    var parameter = parameters.$queryParameters[parameterName];
-                    queryParameters[parameterName] = parameter;
-                });
-            }
-
-            request('GET', domain + path, body, headers, queryParameters, form, reject, resolve, errorHandlers);
-
-        });
-    };
-
-    /**
-     * Get the running status of the server
-     * @method
-     * @name CBioPortalAPIInternal#getServerStatusUsingGET
-     */
-    getServerStatusUsingGET(parameters: {
-        $queryParameters ? : any,
-            $domain ? : string
-    }): Promise < ServerStatusMessage > {
-        return this.getServerStatusUsingGETWithHttpInfo(parameters).then(function(response: request.Response) {
-            return response.body;
-        });
-    };
-    getInfoUsingGETURL(parameters: {
-        $queryParameters ? : any
-    }): string {
-        let queryParameters: any = {};
-        let path = '/info';
-
-        if (parameters.$queryParameters) {
-            Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
-                var parameter = parameters.$queryParameters[parameterName];
-                queryParameters[parameterName] = parameter;
-            });
-        }
-        let keys = Object.keys(queryParameters);
-        return this.domain + path + (keys.length > 0 ? '?' + (keys.map(key => key + '=' + encodeURIComponent(queryParameters[key])).join('&')) : '');
-    };
-
-    /**
-     * Get information about the running instance
-     * @method
-     * @name CBioPortalAPIInternal#getInfoUsingGET
-     */
-    getInfoUsingGETWithHttpInfo(parameters: {
-        $queryParameters ? : any,
-            $domain ? : string
-    }): Promise < request.Response > {
-        const domain = parameters.$domain ? parameters.$domain : this.domain;
-        const errorHandlers = this.errorHandlers;
-        const request = this.request;
-        let path = '/info';
-        let body: any;
-        let queryParameters: any = {};
-        let headers: any = {};
-        let form: any = {};
-        return new Promise(function(resolve, reject) {
-            headers['Accept'] = 'application/json';
-
-            if (parameters.$queryParameters) {
-                Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
-                    var parameter = parameters.$queryParameters[parameterName];
-                    queryParameters[parameterName] = parameter;
-                });
-            }
-
-            request('GET', domain + path, body, headers, queryParameters, form, reject, resolve, errorHandlers);
-
-        });
-    };
-
-    /**
-     * Get information about the running instance
-     * @method
-     * @name CBioPortalAPIInternal#getInfoUsingGET
-     */
-    getInfoUsingGET(parameters: {
-        $queryParameters ? : any,
-            $domain ? : string
-    }): Promise < Info > {
-        return this.getInfoUsingGETWithHttpInfo(parameters).then(function(response: request.Response) {
-            return response.body;
-        });
-    };
     fetchMolecularProfileSampleCountsUsingPOSTURL(parameters: {
         'studyViewFilter': StudyViewFilter,
         $queryParameters ? : any
@@ -5399,6 +5353,134 @@ export default class CBioPortalAPIInternal {
                 return response.body;
             });
         };
+    fetchStructuralVariantsUsingPOSTURL(parameters: {
+        'entrezGeneIds' ? : Array < number > ,
+            'molecularProfileIds' ? : Array < string > ,
+            'sampleMolecularIdentifiers0MolecularProfileId' ? : string,
+            'sampleMolecularIdentifiers0SampleId' ? : string,
+            'structuralVariantFilter': StructuralVariantFilter,
+            $queryParameters ? : any
+    }): string {
+        let queryParameters: any = {};
+        let path = '/structural-variant/fetch';
+        if (parameters['entrezGeneIds'] !== undefined) {
+            queryParameters['entrezGeneIds'] = parameters['entrezGeneIds'];
+        }
+
+        if (parameters['molecularProfileIds'] !== undefined) {
+            queryParameters['molecularProfileIds'] = parameters['molecularProfileIds'];
+        }
+
+        if (parameters['sampleMolecularIdentifiers0MolecularProfileId'] !== undefined) {
+            queryParameters['sampleMolecularIdentifiers[0].molecularProfileId'] = parameters['sampleMolecularIdentifiers0MolecularProfileId'];
+        }
+
+        if (parameters['sampleMolecularIdentifiers0SampleId'] !== undefined) {
+            queryParameters['sampleMolecularIdentifiers[0].sampleId'] = parameters['sampleMolecularIdentifiers0SampleId'];
+        }
+
+        if (parameters.$queryParameters) {
+            Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
+                var parameter = parameters.$queryParameters[parameterName];
+                queryParameters[parameterName] = parameter;
+            });
+        }
+        let keys = Object.keys(queryParameters);
+        return this.domain + path + (keys.length > 0 ? '?' + (keys.map(key => key + '=' + encodeURIComponent(queryParameters[key])).join('&')) : '');
+    };
+
+    /**
+     * Fetch structural variants for entrezGeneIds and molecularProfileIds or sampleMolecularIdentifiers
+     * @method
+     * @name CBioPortalAPIInternal#fetchStructuralVariantsUsingPOST
+     * @param {array} entrezGeneIds - A web service for supplying JSON formatted data to cBioPortal clients. Please note that interal API is currently in beta and subject to change.
+     * @param {array} molecularProfileIds - A web service for supplying JSON formatted data to cBioPortal clients. Please note that interal API is currently in beta and subject to change.
+     * @param {string} sampleMolecularIdentifiers0MolecularProfileId - A web service for supplying JSON formatted data to cBioPortal clients. Please note that interal API is currently in beta and subject to change.
+     * @param {string} sampleMolecularIdentifiers0SampleId - A web service for supplying JSON formatted data to cBioPortal clients. Please note that interal API is currently in beta and subject to change.
+     * @param {} structuralVariantFilter - List of entrezGeneIds and molecularProfileIds or sampleMolecularIdentifiers
+     */
+    fetchStructuralVariantsUsingPOSTWithHttpInfo(parameters: {
+        'entrezGeneIds' ? : Array < number > ,
+            'molecularProfileIds' ? : Array < string > ,
+            'sampleMolecularIdentifiers0MolecularProfileId' ? : string,
+            'sampleMolecularIdentifiers0SampleId' ? : string,
+            'structuralVariantFilter': StructuralVariantFilter,
+            $queryParameters ? : any,
+            $domain ? : string
+    }): Promise < request.Response > {
+        const domain = parameters.$domain ? parameters.$domain : this.domain;
+        const errorHandlers = this.errorHandlers;
+        const request = this.request;
+        let path = '/structural-variant/fetch';
+        let body: any;
+        let queryParameters: any = {};
+        let headers: any = {};
+        let form: any = {};
+        return new Promise(function(resolve, reject) {
+            headers['Accept'] = 'application/json';
+            headers['Content-Type'] = 'application/json';
+
+            if (parameters['entrezGeneIds'] !== undefined) {
+                queryParameters['entrezGeneIds'] = parameters['entrezGeneIds'];
+            }
+
+            if (parameters['molecularProfileIds'] !== undefined) {
+                queryParameters['molecularProfileIds'] = parameters['molecularProfileIds'];
+            }
+
+            if (parameters['sampleMolecularIdentifiers0MolecularProfileId'] !== undefined) {
+                queryParameters['sampleMolecularIdentifiers[0].molecularProfileId'] = parameters['sampleMolecularIdentifiers0MolecularProfileId'];
+            }
+
+            if (parameters['sampleMolecularIdentifiers0SampleId'] !== undefined) {
+                queryParameters['sampleMolecularIdentifiers[0].sampleId'] = parameters['sampleMolecularIdentifiers0SampleId'];
+            }
+
+            if (parameters['structuralVariantFilter'] !== undefined) {
+                body = parameters['structuralVariantFilter'];
+            }
+
+            if (parameters['structuralVariantFilter'] === undefined) {
+                reject(new Error('Missing required  parameter: structuralVariantFilter'));
+                return;
+            }
+
+            if (parameters.$queryParameters) {
+                Object.keys(parameters.$queryParameters).forEach(function(parameterName) {
+                    var parameter = parameters.$queryParameters[parameterName];
+                    queryParameters[parameterName] = parameter;
+                });
+            }
+
+            request('POST', domain + path, body, headers, queryParameters, form, reject, resolve, errorHandlers);
+
+        });
+    };
+
+    /**
+     * Fetch structural variants for entrezGeneIds and molecularProfileIds or sampleMolecularIdentifiers
+     * @method
+     * @name CBioPortalAPIInternal#fetchStructuralVariantsUsingPOST
+     * @param {array} entrezGeneIds - A web service for supplying JSON formatted data to cBioPortal clients. Please note that interal API is currently in beta and subject to change.
+     * @param {array} molecularProfileIds - A web service for supplying JSON formatted data to cBioPortal clients. Please note that interal API is currently in beta and subject to change.
+     * @param {string} sampleMolecularIdentifiers0MolecularProfileId - A web service for supplying JSON formatted data to cBioPortal clients. Please note that interal API is currently in beta and subject to change.
+     * @param {string} sampleMolecularIdentifiers0SampleId - A web service for supplying JSON formatted data to cBioPortal clients. Please note that interal API is currently in beta and subject to change.
+     * @param {} structuralVariantFilter - List of entrezGeneIds and molecularProfileIds or sampleMolecularIdentifiers
+     */
+    fetchStructuralVariantsUsingPOST(parameters: {
+            'entrezGeneIds' ? : Array < number > ,
+                'molecularProfileIds' ? : Array < string > ,
+                'sampleMolecularIdentifiers0MolecularProfileId' ? : string,
+                'sampleMolecularIdentifiers0SampleId' ? : string,
+                'structuralVariantFilter': StructuralVariantFilter,
+                $queryParameters ? : any,
+                $domain ? : string
+        }): Promise < Array < StructuralVariant >
+        > {
+            return this.fetchStructuralVariantsUsingPOSTWithHttpInfo(parameters).then(function(response: request.Response) {
+                return response.body;
+            });
+        };
     fetchStructuralVariantGenesUsingPOSTURL(parameters: {
         'studyViewFilter': StudyViewFilter,
         $queryParameters ? : any
diff --git a/packages/cbioportal-ts-api-client/src/index.tsx b/packages/cbioportal-ts-api-client/src/index.tsx
index aec3e7cc9d5..dd70be0485d 100644
--- a/packages/cbioportal-ts-api-client/src/index.tsx
+++ b/packages/cbioportal-ts-api-client/src/index.tsx
@@ -63,5 +63,7 @@ export {
     MutationCountByPosition,
     ResourceDefinition,
     CustomDriverAnnotationReport,
+    StructuralVariant,
+    StructuralVariantFilter,
     default as CBioPortalAPIInternal,
 } from './generated/CBioPortalAPIInternal';
diff --git a/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI-docs.json b/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI-docs.json
index 234b7589f71..825d767cb03 100644
--- a/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI-docs.json
+++ b/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI-docs.json
@@ -1864,6 +1864,12 @@
           "items": {
             "type": "string"
           }
+        },
+        "protein": {
+          "type": "array",
+          "items": {
+            "type": "string"
+          }
         }
       }
     },
diff --git a/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI.ts b/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI.ts
index 209d6640ba9..73c97ccf4ca 100644
--- a/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI.ts
+++ b/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPI.ts
@@ -340,6 +340,8 @@ export type Hgvs = {
 
         'genomic': Array < string >
 
+        'protein': Array < string >
+
 };
 export type Homozygotes = {
     'hom': number
diff --git a/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal-docs.json b/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal-docs.json
index d4ee38c582d..61f039828d6 100644
--- a/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal-docs.json
+++ b/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal-docs.json
@@ -1486,6 +1486,12 @@
           "items": {
             "type": "string"
           }
+        },
+        "protein": {
+          "type": "array",
+          "items": {
+            "type": "string"
+          }
         }
       }
     },
diff --git a/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal.ts b/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal.ts
index 1c0c8abb4be..0ee75093d4c 100644
--- a/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal.ts
+++ b/packages/genome-nexus-ts-api-client/src/generated/GenomeNexusAPIInternal.ts
@@ -242,6 +242,8 @@ export type Hgvs = {
 
         'genomic': Array < string >
 
+        'protein': Array < string >
+
 };
 export type Homozygotes = {
     'hom': number
diff --git a/src/AppStore.ts b/src/AppStore.ts
index 6e8a8e12bbe..79aa281f56e 100644
--- a/src/AppStore.ts
+++ b/src/AppStore.ts
@@ -6,7 +6,7 @@ import {
 } from 'cbioportal-frontend-commons';
 import { getLoadConfig, getServerConfig } from './config/config';
 import _ from 'lodash';
-import internalClient from 'shared/api/cbioportalInternalClientInstance';
+import client from 'shared/api/cbioportalClientInstance';
 import { sendSentryMessage } from './shared/lib/tracking';
 
 export type SiteError = {
@@ -96,9 +96,7 @@ export class AppStore {
 
     readonly portalVersion = remoteData<string | undefined>({
         invoke: async () => {
-            const portalVersionResult = await internalClient.getInfoUsingGET(
-                {}
-            );
+            const portalVersionResult = await client.getInfoUsingGET({});
             if (portalVersionResult && portalVersionResult.portalVersion) {
                 let version = undefined;
 
diff --git a/src/pages/patientView/clinicalInformation/PatientViewPageStore.ts b/src/pages/patientView/clinicalInformation/PatientViewPageStore.ts
index 0ce71c16e26..fd8a6e7e8af 100644
--- a/src/pages/patientView/clinicalInformation/PatientViewPageStore.ts
+++ b/src/pages/patientView/clinicalInformation/PatientViewPageStore.ts
@@ -16,7 +16,6 @@ import {
     ResourceData,
     Sample,
     SampleMolecularIdentifier,
-    StructuralVariantFilter,
     GenericAssayData,
     GenericAssayMeta,
     GenericAssayDataMultipleStudyFilter,
@@ -200,6 +199,7 @@ import {
 } from 'shared/lib/GenericAssayUtils/MutationalSignaturesUtils';
 import { getServerConfig } from 'config/config';
 import { getOncoKbIconStyle } from 'shared/lib/AnnotationColumnUtils';
+import { StructuralVariantFilter } from 'cbioportal-ts-api-client';
 
 type PageMode = 'patient' | 'sample';
 type ResourceId = string;
@@ -613,7 +613,7 @@ export class PatientViewPageStore {
                 .value();
 
             if (mutationalSignatureContributionStableIds.length > 0) {
-                return client.fetchGenericAssayMetaDataUsingPOST({
+                return client.fetchGenericAssayMetaUsingPOST({
                     genericAssayMetaFilter: {
                         genericAssayStableIds: mutationalSignatureContributionStableIds,
                     } as GenericAssayMetaFilter,
@@ -1615,7 +1615,7 @@ export class PatientViewPageStore {
                     }),
                 } as StructuralVariantFilter;
 
-                return client.fetchStructuralVariantsUsingPOST({
+                return internalClient.fetchStructuralVariantsUsingPOST({
                     structuralVariantFilter,
                 });
             }
diff --git a/src/pages/patientView/structuralVariant/PatientViewStructuralVariantTable.tsx b/src/pages/patientView/structuralVariant/PatientViewStructuralVariantTable.tsx
index fde2c5141a7..692441098ce 100644
--- a/src/pages/patientView/structuralVariant/PatientViewStructuralVariantTable.tsx
+++ b/src/pages/patientView/structuralVariant/PatientViewStructuralVariantTable.tsx
@@ -5,7 +5,6 @@ import { PatientViewPageStore } from '../clinicalInformation/PatientViewPageStor
 import LazyMobXTable, {
     Column,
 } from 'shared/components/lazyMobXTable/LazyMobXTable';
-import { StructuralVariant } from 'cbioportal-ts-api-client';
 import TumorColumnFormatter from '../mutation/column/TumorColumnFormatter';
 import HeaderIconMenu from '../mutation/HeaderIconMenu';
 import GeneFilterMenu from '../mutation/GeneFilterMenu';
@@ -26,6 +25,7 @@ import {
     DEFAULT_ONCOKB_CONTENT_WIDTH,
     updateOncoKbIconStyle,
 } from 'shared/lib/AnnotationColumnUtils';
+import { StructuralVariant } from 'cbioportal-ts-api-client';
 
 export interface IPatientViewStructuralVariantTableProps {
     store: PatientViewPageStore;
diff --git a/src/pages/patientView/structuralVariant/column/AnnotationColumnFormatter.tsx b/src/pages/patientView/structuralVariant/column/AnnotationColumnFormatter.tsx
index 54418ef7a6c..286b5bfadaf 100644
--- a/src/pages/patientView/structuralVariant/column/AnnotationColumnFormatter.tsx
+++ b/src/pages/patientView/structuralVariant/column/AnnotationColumnFormatter.tsx
@@ -8,7 +8,7 @@ import {
     USE_DEFAULT_PUBLIC_INSTANCE_FOR_ONCOKB,
     oncoKbAnnotationSortValue,
 } from 'react-mutation-mapper';
-import { CancerStudy, StructuralVariant } from 'cbioportal-ts-api-client';
+import { CancerStudy } from 'cbioportal-ts-api-client';
 import { IAnnotationColumnProps } from 'shared/components/mutationTable/column/AnnotationColumnFormatter';
 import { CancerGene, IndicatorQueryResp } from 'oncokb-ts-api-client';
 import {
@@ -19,6 +19,7 @@ import {
     calculateOncoKbAvailableDataType,
 } from 'cbioportal-utils';
 import AnnotationHeader from 'shared/components/mutationTable/column/annotation/AnnotationHeader';
+import { StructuralVariant } from 'cbioportal-ts-api-client';
 
 export default class AnnotationColumnFormatter {
     public static getData(
diff --git a/src/pages/resultsView/ResultsViewPageStore.ts b/src/pages/resultsView/ResultsViewPageStore.ts
index 91a5e0e89d6..d5a8e97cb28 100644
--- a/src/pages/resultsView/ResultsViewPageStore.ts
+++ b/src/pages/resultsView/ResultsViewPageStore.ts
@@ -33,9 +33,12 @@ import {
     SampleIdentifier,
     SampleList,
     SampleMolecularIdentifier,
+} from 'cbioportal-ts-api-client';
+import {
     StructuralVariant,
     StructuralVariantFilter,
 } from 'cbioportal-ts-api-client';
+
 import client from 'shared/api/cbioportalClientInstance';
 import {
     CanonicalMutationType,
@@ -3286,7 +3289,7 @@ export class ResultsViewPageStore
                     sampleMolecularIdentifiers: filters,
                 } as StructuralVariantFilter;
 
-                return await client.fetchStructuralVariantsUsingPOST({
+                return await internalClient.fetchStructuralVariantsUsingPOST({
                     structuralVariantFilter: data,
                 });
             }
@@ -5899,7 +5902,7 @@ export class ResultsViewPageStore
             if (_.isEmpty(filters)) {
                 return [];
             } else {
-                return client.fetchStructuralVariantsUsingPOST({
+                return internalClient.fetchStructuralVariantsUsingPOST({
                     structuralVariantFilter: {
                         entrezGeneIds: [q.entrezGeneId],
                         sampleMolecularIdentifiers: filters,
diff --git a/src/pages/resultsView/ResultsViewPageStoreUtils.ts b/src/pages/resultsView/ResultsViewPageStoreUtils.ts
index b56c3a350e1..220ab1a9478 100644
--- a/src/pages/resultsView/ResultsViewPageStoreUtils.ts
+++ b/src/pages/resultsView/ResultsViewPageStoreUtils.ts
@@ -9,9 +9,11 @@ import {
     PatientFilter,
     PatientIdentifier,
     ReferenceGenomeGene,
-    StructuralVariant,
     Sample,
 } from 'cbioportal-ts-api-client';
+
+import { StructuralVariant } from 'cbioportal-ts-api-client';
+
 import { action, ObservableMap } from 'mobx';
 import AccessorsForOqlFilter, {
     getSimplifiedMutationType,
diff --git a/src/pages/resultsView/plots/PlotsTabUtils.tsx b/src/pages/resultsView/plots/PlotsTabUtils.tsx
index 436241cb9e7..4dd1b9a019d 100644
--- a/src/pages/resultsView/plots/PlotsTabUtils.tsx
+++ b/src/pages/resultsView/plots/PlotsTabUtils.tsx
@@ -22,8 +22,10 @@ import {
     Mutation,
     NumericGeneMolecularData,
     Sample,
-    StructuralVariant,
 } from 'cbioportal-ts-api-client';
+
+import { StructuralVariant } from 'cbioportal-ts-api-client';
+
 import {
     capitalize,
     remoteData,
diff --git a/src/pages/studyView/StudyViewComparisonUtils.ts b/src/pages/studyView/StudyViewComparisonUtils.ts
index 0ffda0d6039..301d7cf3942 100644
--- a/src/pages/studyView/StudyViewComparisonUtils.ts
+++ b/src/pages/studyView/StudyViewComparisonUtils.ts
@@ -10,9 +10,13 @@ import {
     Sample,
     SampleIdentifier,
     SampleMolecularIdentifier,
+} from 'cbioportal-ts-api-client';
+
+import {
     StructuralVariant,
     StructuralVariantFilter,
 } from 'cbioportal-ts-api-client';
+
 import { getGroupParameters } from 'pages/groupComparison/comparisonGroupManager/ComparisonGroupManagerUtils';
 import { LoadingPhase } from 'pages/groupComparison/GroupComparisonLoading';
 import comparisonClient from 'shared/api/comparisonGroupClientInstance';
@@ -21,6 +25,7 @@ import { ChartTypeEnum } from 'pages/studyView/StudyViewConfig';
 import { getGeneFromUniqueKey } from './TableUtils';
 import client from 'shared/api/cbioportalClientInstance';
 import { REQUEST_ARG_ENUM } from 'shared/constants';
+import internalClient from 'shared/api/cbioportalInternalClientInstance';
 
 export function doesChartHaveComparisonGroupsLimit(chartMeta: ChartMeta) {
     return chartMeta.uniqueKey !== SpecialChartsUniqueKeyEnum.CANCER_STUDIES;
@@ -145,7 +150,7 @@ export async function getSvData(
         geneIds: hugoGeneSymbols,
     });
 
-    return client.fetchStructuralVariantsUsingPOST({
+    return internalClient.fetchStructuralVariantsUsingPOST({
         structuralVariantFilter: {
             entrezGeneIds: genes.map(g => g.entrezGeneId),
             sampleMolecularIdentifiers,
diff --git a/src/shared/components/oncoprint/TooltipUtils.ts b/src/shared/components/oncoprint/TooltipUtils.ts
index 0e1d609a6e6..ecdeaef2e68 100644
--- a/src/shared/components/oncoprint/TooltipUtils.ts
+++ b/src/shared/components/oncoprint/TooltipUtils.ts
@@ -6,8 +6,10 @@ import {
     GenePanelData,
     MolecularProfile,
     Mutation,
-    StructuralVariant,
 } from 'cbioportal-ts-api-client';
+
+import { StructuralVariant } from 'cbioportal-ts-api-client';
+
 import client from 'shared/api/cbioportalClientInstance';
 import {
     ClinicalTrackSpec,
diff --git a/src/shared/lib/GenericAssayUtils/GenericAssayCommonUtils.ts b/src/shared/lib/GenericAssayUtils/GenericAssayCommonUtils.ts
index 1eae76ced2d..e8904f2f90b 100644
--- a/src/shared/lib/GenericAssayUtils/GenericAssayCommonUtils.ts
+++ b/src/shared/lib/GenericAssayUtils/GenericAssayCommonUtils.ts
@@ -1,4 +1,5 @@
 import client from 'shared/api/cbioportalClientInstance';
+import internalClient from 'shared/api/cbioportalInternalClientInstance';
 import {
     GenericAssayMetaFilter,
     GenericAssayMeta,
@@ -112,7 +113,7 @@ export function fetchGenericAssayMetaByProfileIds(
     genericAssayProfileIds: string[]
 ) {
     if (genericAssayProfileIds.length > 0) {
-        return client.fetchGenericAssayMetaDataUsingPOST({
+        return client.fetchGenericAssayMetaUsingPOST({
             genericAssayMetaFilter: {
                 molecularProfileIds: genericAssayProfileIds,
                 // the Swagger-generated type expected by the client method below
@@ -126,7 +127,7 @@ export function fetchGenericAssayMetaByProfileIds(
 
 export function fetchGenericAssayMetaByEntityIds(entityIds: string[]) {
     if (entityIds.length > 0) {
-        return client.fetchGenericAssayMetaDataUsingPOST({
+        return client.fetchGenericAssayMetaUsingPOST({
             genericAssayMetaFilter: {
                 genericAssayStableIds: entityIds,
                 // the Swagger-generated type expected by the client method below
diff --git a/src/shared/lib/StoreUtils.ts b/src/shared/lib/StoreUtils.ts
index f526c9c427e..09ef42a20b4 100644
--- a/src/shared/lib/StoreUtils.ts
+++ b/src/shared/lib/StoreUtils.ts
@@ -33,7 +33,6 @@ import {
     ReferenceGenomeGene,
     Sample,
     SampleFilter,
-    StructuralVariant,
 } from 'cbioportal-ts-api-client';
 import defaultClient from 'shared/api/cbioportalClientInstance';
 import client from 'shared/api/cbioportalClientInstance';
@@ -109,6 +108,7 @@ import {
 } from 'shared/lib/MutationUtils';
 import { ObservableMap } from 'mobx';
 import { chunkCalls } from 'cbioportal-utils';
+import { StructuralVariant } from 'cbioportal-ts-api-client';
 
 export const MolecularAlterationType_filenameSuffix: {
     [K in MolecularProfile['molecularAlterationType']]?: string;
diff --git a/src/shared/lib/oql/AccessorsForOqlFilter.ts b/src/shared/lib/oql/AccessorsForOqlFilter.ts
index 6e923566a66..450330621bd 100644
--- a/src/shared/lib/oql/AccessorsForOqlFilter.ts
+++ b/src/shared/lib/oql/AccessorsForOqlFilter.ts
@@ -2,8 +2,9 @@ import {
     Mutation,
     MolecularProfile,
     NumericGeneMolecularData,
-    StructuralVariant,
 } from 'cbioportal-ts-api-client';
+import { StructuralVariant } from 'cbioportal-ts-api-client';
+
 import _ from 'lodash';
 import {
     AlterationTypeConstants,
diff --git a/src/shared/lib/oql/annotateAlterationTypes.ts b/src/shared/lib/oql/annotateAlterationTypes.ts
index f03353efa4f..51f05fdba73 100644
--- a/src/shared/lib/oql/annotateAlterationTypes.ts
+++ b/src/shared/lib/oql/annotateAlterationTypes.ts
@@ -1,8 +1,7 @@
 import AccessorsForOqlFilter from './AccessorsForOqlFilter';
-import {
-    NumericGeneMolecularData,
-    StructuralVariant,
-} from 'cbioportal-ts-api-client';
+import { NumericGeneMolecularData } from 'cbioportal-ts-api-client';
+import { StructuralVariant } from 'cbioportal-ts-api-client';
+
 import {
     AlterationTypeConstants,
     AnnotatedMutation,
diff --git a/src/shared/lib/oql/oqlfilter.ts b/src/shared/lib/oql/oqlfilter.ts
index 263f24af72c..75537c1df15 100644
--- a/src/shared/lib/oql/oqlfilter.ts
+++ b/src/shared/lib/oql/oqlfilter.ts
@@ -18,11 +18,10 @@ import {
     ExtendedAlteration,
     AnnotatedStructuralVariant,
 } from '../../../pages/resultsView/ResultsViewPageStore';
-import {
-    NumericGeneMolecularData,
-    Mutation,
-    StructuralVariant,
-} from 'cbioportal-ts-api-client';
+import { NumericGeneMolecularData, Mutation } from 'cbioportal-ts-api-client';
+
+import { StructuralVariant } from 'cbioportal-ts-api-client';
+
 import { Alteration } from 'shared/lib/oql/oql-parser';
 import AccessorsForOqlFilter, {
     Datum,
diff --git a/yarn.lock b/yarn.lock
index e9cebab5fbf..178138d7b76 100644
--- a/yarn.lock
+++ b/yarn.lock
@@ -20533,16 +20533,6 @@ react-column-resizer@^1.1.9:
   resolved "https://registry.yarnpkg.com/react-column-resizer/-/react-column-resizer-1.1.9.tgz#b3e591003d1373ae9a9f85ef9d855813743773dd"
   integrity sha512-l25LPyN3Gu33RC726cv3ZnS9EaI/B+ZIY1MrJiiHcBqsY4BKRYNBbrZolUfzBjjWDwHOBMc/fZLiSxmDGPqCrQ==
 
-react-dom@16.14.0, react-dom@^16.6:
-  version "16.14.0"
-  resolved "https://registry.yarnpkg.com/react-dom/-/react-dom-16.14.0.tgz#7ad838ec29a777fb3c75c3a190f661cf92ab8b89"
-  integrity sha512-1gCeQXDLoIqMgqD3IO2Ah9bnf0w9kzhwN5q4FGnHZ67hBm9yePzB5JJAIQCc8x3pFnNlwFq4RidZggNAAkzWWw==
-  dependencies:
-    loose-envify "^1.1.0"
-    object-assign "^4.1.1"
-    prop-types "^15.6.2"
-    scheduler "^0.19.1"
-
 react-dom@^15.3.1:
   version "15.6.2"
   resolved "https://registry.yarnpkg.com/react-dom/-/react-dom-15.6.2.tgz#41cfadf693b757faf2708443a1d1fd5a02bef730"
@@ -20553,6 +20543,16 @@ react-dom@^15.3.1:
     object-assign "^4.1.0"
     prop-types "^15.5.10"
 
+react-dom@^16.6:
+  version "16.14.0"
+  resolved "https://registry.yarnpkg.com/react-dom/-/react-dom-16.14.0.tgz#7ad838ec29a777fb3c75c3a190f661cf92ab8b89"
+  integrity sha512-1gCeQXDLoIqMgqD3IO2Ah9bnf0w9kzhwN5q4FGnHZ67hBm9yePzB5JJAIQCc8x3pFnNlwFq4RidZggNAAkzWWw==
+  dependencies:
+    loose-envify "^1.1.0"
+    object-assign "^4.1.1"
+    prop-types "^15.6.2"
+    scheduler "^0.19.1"
+
 react-dom@^16.7.0:
   version "16.8.4"
   resolved "https://registry.yarnpkg.com/react-dom/-/react-dom-16.8.4.tgz#1061a8e01a2b3b0c8160037441c3bf00a0e3bc48"