Release v5.3.0 #10098
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Release v5.3.0 #10098
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- modified java files to remove unused properties and changes to tests - db changes, mutationmapper.xml - Update seed_mini.sql roll back changes for refseqMrnaId roll back changes for refseqMrnaId Update ExtendedMutation.java Added required property setOncotatorRefseqMrnaId and getOncotatorRefseqMrnaId
Updated more files for removed fields Remove unused oncotator fields Remove unused oncotator fields ONCOTATOR_DBSNP_RS ONCOTATOR_UNIPROT_ENTRY_NAME remove fields from sql file ONCOTATOR_DBSNP_RS and ONCOTATOR_UNIPROT_ENTRY_NAME removal from sql file
db changes in sql for renaming columns renamed the column prefixes from oncotator to mutation on multiple classes and files
Update testSql.sql updating testSql for the name change of columns from ONCOTATOR to MUTATION Update DaoMutation.java The data files still use the old column prefix of ONCOTATOR instead of MUTATION Update DaoMutation.java Update migration.sql Adding quotes around column names
db changes in sql for renaming columns renamed the column prefixes from oncotator to mutation on multiple classes and files
Update migration.sql fix syntax errors in mysql change column Update migration.sql fix syntax errors in mysql change column setting db version setting db version
Removed Link columns and modified the documentation
…nt-final Fix 9461 mutations api endpoint final
Merge master into v5.3.0
We need to update this test because it's not java 8 compatible.
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Tested on triage with the new importer and new database scheme, we will merge this pull request and make am official release. |
dippindots
added
skip-changelog
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Kudos, SonarCloud Quality Gate passed!
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Includes database changes from #9914