From 79af8876d33d7bf06912ec4faa2094cfc38b1fc0 Mon Sep 17 00:00:00 2001
From: Mark Andrew Miller <MAM@lbl.gov>
Date: Mon, 6 Dec 2021 10:59:56 -0500
Subject: [PATCH 1/3] https://github.com/cancerDHC/ccdhmodel/issues/131

---
 decimal_test.py | 23 +++++++++++++++++++++++
 1 file changed, 23 insertions(+)
 create mode 100644 decimal_test.py

diff --git a/decimal_test.py b/decimal_test.py
new file mode 100644
index 0000000..8993786
--- /dev/null
+++ b/decimal_test.py
@@ -0,0 +1,23 @@
+import crdch_model as cm
+from linkml_runtime.dumpers import yaml_dumper
+
+
+def test_dumps_vcc():
+    vcc_obs = cm.Observation(observation_type=cm.CodeableConcept(), value_codeable_concept=cm.CodeableConcept())
+    vcc_dump = yaml_dumper.dumps(vcc_obs)
+    # print statements ignored by default in passing pytests?
+    # https://stackoverflow.com/questions/24617397/how-to-print-to-console-in-pytest
+    # try -s argument or PyCharm specific configuration?
+    print(vcc_dump)
+    assert len(vcc_dump) > 0
+
+
+def test_dumps_decimal():
+    decimal_obs = cm.Observation(observation_type=cm.CodeableConcept(), value_decimal="1.23")
+    vd_dump = ""
+    try:
+        vd_dump = yaml_dumper.dumps(decimal_obs)
+    except Exception as e:
+        # PEP 8: E722 do not use bare 'except'
+        print(f"{e}\nCouldn't dump CRDC-H decimal value to YAML string")
+    assert len(vd_dump) > 0

From 9727f0643a9944dcfbb9def7152aebe0b05a6b11 Mon Sep 17 00:00:00 2001
From: Mark Andrew Miller <MAM@lbl.gov>
Date: Thu, 9 Dec 2021 11:26:27 -0500
Subject: [PATCH 2/3] force PyCharm to show print results

and the pointof the test is to illustrate that cm.Observation(observation_type=cm.CodeableConcept(), value_decimal=1.23) can't be serialized to YAML
---
 decimal_test.py | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/decimal_test.py b/decimal_test.py
index 8993786..f4af9d2 100644
--- a/decimal_test.py
+++ b/decimal_test.py
@@ -3,11 +3,15 @@
 
 
 def test_dumps_vcc():
-    vcc_obs = cm.Observation(observation_type=cm.CodeableConcept(), value_codeable_concept=cm.CodeableConcept())
+    vcc_obs = cm.Observation(observation_type=cm.CodeableConcept(),
+                             value_codeable_concept=cm.CodeableConcept(
+                                 coding=cm.Coding(code="3.1415", system="math professor")))
     vcc_dump = yaml_dumper.dumps(vcc_obs)
     # print statements ignored by default in passing pytests?
     # https://stackoverflow.com/questions/24617397/how-to-print-to-console-in-pytest
-    # try -s argument or PyCharm specific configuration?
+    # https://intellij-support.jetbrains.com/hc/en-us/community/posts/360007644040-Show-logging-output-when-using-pytest
+    # added `-p no:logging -s` to "Additional Arguments" in Run Configuration
+    # also try (global?) Run Configuration Template for pytest
     print(vcc_dump)
     assert len(vcc_dump) > 0
 

From 90786875191c470c38352b87bf7f5ca84779b02a Mon Sep 17 00:00:00 2001
From: Mark Andrew Miller <MAM@lbl.gov>
Date: Thu, 9 Dec 2021 11:30:09 -0500
Subject: [PATCH 3/3] ignoring .DS_Store and .idea/

---
 .gitignore | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.gitignore b/.gitignore
index b6e4761..db6c8d9 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,3 +1,6 @@
+.DS_Store
+.idea/
+
 # Byte-compiled / optimized / DLL files
 __pycache__/
 *.py[cod]