Yerly_BCC_wounding

Code to reproduce the results in Wounding triggers invasive progression in human basal cell carcinoma. Laura Yerly, Massimo Andreatta, Josep Garnica, Jeremy Di Domizio, Michel Gilliet, Santiago J Carmona, Francois Kuonen. BioRxiv 2024 DOI:10.1101/2024.05.31.596823

Name		Name	Last commit message	Last commit date
Latest commit History 18 Commits
_aux		_aux
scGate_models-0.16		scGate_models-0.16
.gitignore		.gitignore
1-Combination_all_Yerly_BCCs.Rmd		1-Combination_all_Yerly_BCCs.Rmd
1.1-Characterization_cell_populations.Rmd		1.1-Characterization_cell_populations.Rmd
1.2-CNV_analysis.Rmd		1.2-CNV_analysis.Rmd
2-Combination_all_Ganier_BCCs.Rmd		2-Combination_all_Ganier_BCCs.Rmd
2.1-Characterization_cell_populations.Rmd		2.1-Characterization_cell_populations.Rmd
2.2-CNV_analysis_Ganier.Rmd		2.2-CNV_analysis_Ganier.Rmd
3-Combination_Tumor_Yerly_Ganier.Rmd		3-Combination_Tumor_Yerly_Ganier.Rmd
4-Combination_wound_healing_experiments.Rmd		4-Combination_wound_healing_experiments.Rmd
4.1-Characterization_cell_populations.Rmd		4.1-Characterization_cell_populations.Rmd
4.2-CNV_analysis.Rmd		4.2-CNV_analysis.Rmd
5-Yost_analysis.Rmd		5-Yost_analysis.Rmd
5.1-Yost_characterization.Rmd		5.1-Yost_characterization.Rmd
5.2-CNV_analysis_Yost.Rmd		5.2-CNV_analysis_Yost.Rmd
LICENSE		LICENSE
P1-NMF.Rmd		P1-NMF.Rmd
P2-annotate_MPs.Rmd		P2-annotate_MPs.Rmd
P3-MPs_vs_infiltrativeSignature.Rmd		P3-MPs_vs_infiltrativeSignature.Rmd
P4-wounding.Rmd		P4-wounding.Rmd
P5-wounding_TME_CAFsignature.Rmd		P5-wounding_TME_CAFsignature.Rmd
P6.1-wound_response_scRNAseq_BCC.Rmd		P6.1-wound_response_scRNAseq_BCC.Rmd
P6.2-wound_response_GeoMx_spatial.Rmd		P6.2-wound_response_GeoMx_spatial.Rmd
README.md		README.md
Yerly_BCC_wounding.Rproj		Yerly_BCC_wounding.Rproj
renv.lock		renv.lock

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