From 92b6f2c95bd744ce841b7b4a9284ae0ae165bcf0 Mon Sep 17 00:00:00 2001
From: pamelaxu213 <pamela.xu@mail.utoronto.ca>
Date: Thu, 18 Jul 2024 15:13:08 -0400
Subject: [PATCH] add GreenDB annotation

---
 vcfanno/crg.vcfanno_hg38.conf | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/vcfanno/crg.vcfanno_hg38.conf b/vcfanno/crg.vcfanno_hg38.conf
index af5d3d4..cbd95a4 100644
--- a/vcfanno/crg.vcfanno_hg38.conf
+++ b/vcfanno/crg.vcfanno_hg38.conf
@@ -184,3 +184,9 @@ columns = [9]
 names = ["AlphaMissense"]
 ops=["first"]
 
+#GreenDB
+[[annotation]]
+file="GRCh38_GREEN-DB.bed.gz"
+columns = [5,9,13]
+names = ["GreenDB_variant_type", "GreenDB_closest_gene", "GreenDB_controlled_gene"]
+ops=["self", "self", "self"]