Merge pull request #2 from certara/init_pkg

Init pkg

.Rbuildignore

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+^.*\.Rproj$
+^\.Rproj\.user$
+^\.travis\.yml$
+^data-raw$
+.git
+^cran-comments\.md$
+^\..*\.swp$
+^.*\.R\.tmp\.R$
+^_config.yml$
+^doc$
+^Meta$
+^LICENSE\.md$
+^_pkgdown\.yml$
+^docs$
+^pkgdown$
+^_pkgdown\.yml$
+^\.github$

.github/.gitignore

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+*.html

.github/workflows/check-standard.yaml

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+# R CMD check workflow
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+    branches: [main, master]
+
+name: R-CMD-check
+
+jobs:
+  R-CMD-check:
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macOS-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
+    steps:
+      - uses: actions/checkout@v2
+
+      - uses: r-lib/actions/setup-pandoc@v2
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
+          use-public-rspm: true
+
+      - uses: r-lib/actions/setup-r-dependencies@v2
+        with:
+          extra-packages: rcmdcheck
+
+      - uses: r-lib/actions/check-r-package@v2
+        with:
+          args: 'c("--no-manual", "--as-cran")'
+          error-on: '"error"'

.gitignore

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+.Rproj.user
+.Rhistory
+.RData
+.Ruserdata
+

DESCRIPTION

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+Package: mlcov
+Type: Package
+Title: Machine learning application for covariate selection
+Version: 0.0.1.9000
+Authors@R: c(
+      person("Ayman", "Akil", email = "ayman.akil@certara.com",
+        role = c("aut")),
+      person("Ibtissem", "Rebai", email = "Ibtissem.Rebai@certara.com",
+        role = c("aut")),
+      person("Vincent", "Duval", email = "Vincent.Duval@certara.com",
+        role = c("aut")),
+      person("Anna", "Largajolli", email = "Anna.Largajolli@certara.com",
+      role = c("aut")),
+      person("James", "Craig", email = "james.craig@certara.com",
+      role = c("aut", "cre")),
+      person("Mike", "Talley", email = "mike.talley@certara.com",
+      role = c("aut")),
+      person("Certara USA, Inc.", role = c("cph","fnd"))
+    )
+Description: Machine learning application for selection of covariate effects
+URL: https://github.com/certara/mlcov
+BugReports: https://github.com/certara/mlcov/issues
+Depends:
+    R (>= 3.5.0),
+    caret,
+    SHAPforxgboost
+Imports:
+    randomForest,
+    Boruta,
+    dplyr,
+    xgboost,
+    glmnet,
+    Metrics,
+    hrbrthemes,
+    Ckmeans.1d.dp,
+    BBmisc,
+    ggplot2,
+    GGally,
+    grid,
+    ggstance,
+    ggpubr,
+    gridExtra
+Suggests:
+    knitr,
+    rmarkdown,
+    testthat (>= 3.0.0),
+    vdiffr (>= 1.0.0)
+License: MIT + file LICENSE
+LazyData: true
+Encoding: UTF-8
+VignetteBuilder: knitr
+RoxygenNote: 7.2.3
+Config/testthat/edition: 3

NAMESPACE

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+# Generated by roxygen2: do not edit by hand
+
+export(MLCovSearch)
+export(generate_residualsplots)
+import(BBmisc)
+import(Boruta)
+import(Ckmeans.1d.dp)
+import(GGally)
+import(Metrics)
+import(SHAPforxgboost)
+import(caret)
+import(dplyr)
+import(ggplot2)
+import(ggpubr)
+import(ggstance)
+import(glmnet)
+import(grid)
+import(gridExtra)
+import(hrbrthemes)
+import(randomForest)
+import(xgboost)