capture stdout and write to file

Author: gijzelaerr

v1.0/conformance_test_v1.0.yaml

@@ -983,7 +983,7 @@
   doc: Test hints with $import
 
 - job: v1.0/recursive-input-directory.json
-  output:
+  output: {
    output_dir: {
         "basename": "work_dir",
         "class": "Directory",
@@ -1023,17 +1023,17 @@
                 "location": "work_dir/e",
                 "size": 0
             },
-            {
-                "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
-                "basename": "testresult",
-                "location": "work_dir/testresult",
-                "class": "File",
-                "size": 0
-            }
         ],
         "location": "work_dir",
+    },
+    "test_result": {
+        "basename": "output.txt",
+        "checksum": "sha1$da39a3ee5e6b4b0d3255bfef95601890afd80709",
+        "class": "File",
+        "location": "output.txt",
+        "size": 0
     }
-
+}
 
 
 

v1.0/v1.0/recursive-input-directory.cwl

@@ -7,26 +7,27 @@ requirements:
       - entry: $(inputs.input_dir)
         entryname: work_dir
         writable: true
+stdout: output.txt
 baseCommand:
  -  bash
  - '-c'
- - 'touch work_dir/testresult;
-    touch work_dir/e;
-    if [ ! -w work_dir ]; then echo work_dir not writable >> work_dir/testresult; fi;
-    if [ -L work_dir ]; then echo work_dir is a symlink >> work_dir/testresult; fi;
-    if [ ! -w work_dir/a ]; then echo work_dir/a not writable >> work_dir/testresult; fi;
-    if [ -L work_dir/a ]; then echo work_dir/a is a symlink >> work_dir/testresult; fi;
-    if [ ! -w work_dir/c ]; then echo work_dir/c not writable >> work_dir/testresult; fi;
-    if [ -L work_dir/c ]; then echo work_dir/c is a symlink >> work_dir/testresult; fi;
-    if [ ! -w work_dir/c/d ]; then echo work_dir/c/d not writable >> work_dir/testresult; fi;
-    if [ -L work_dir/c/d ]; then echo work_dir/c/d is a symlink >> work_dir/testresult; fi;
-    if [ ! -w work_dir/e ]; then echo work_dir/e not writable >> work_dir/testresult; fi;
-    if [ -L work_dir/e ]; then echo work_dir/e is a symlink >> work_dir/testresult; fi;'
-
+ - 'touch work_dir/e;
+    if [ ! -w work_dir ]; then echo work_dir not writable; fi;
+    if [ -L work_dir ]; then echo work_dir is a symlink; fi;
+    if [ ! -w work_dir/a ]; then echo work_dir/a not writable; fi;
+    if [ -L work_dir/a ]; then echo work_dir/a is a symlink; fi;
+    if [ ! -w work_dir/c ]; then echo work_dir/c not writable; fi;
+    if [ -L work_dir/c ]; then echo work_dir/c is a symlink; fi;
+    if [ ! -w work_dir/c/d ]; then echo work_dir/c/d not writable; fi;
+    if [ -L work_dir/c/d ]; then echo work_dir/c/d is a symlink; fi;
+    if [ ! -w work_dir/e ]; then echo work_dir/e not writable; fi;
+    if [ -L work_dir/e ]; then echo work_dir/e is a symlink ; fi;'
 inputs:
   input_dir: Directory
 outputs:
   output_dir:
     type: Directory
     outputBinding:
-      glob: work_dir
+      glob: work_dir
+  test_result:
+    type: stdout