Segmentation Fault 11 when running jupyter on Mac OS X #378
Comments
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Thanks for reporting. Unfortunately, I have no machine on which to test this (and we're not adding 10x the builds just to get tests on the platform where this is ocurring), so will have to defer to a suitably equipped member of @conda-forge/jupyterlab to debug further. |
FYI, according to https://endoflife.date/macos (not official, but informative), OS X 10.14 was end-of-life about 1.5 years ago (Oct 2021). I'm not sure what the conda-forge policy is towards end-of-life OS versions, but I wouldn't be surprised if support was dropped. |
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Hello I got the same issue with macOS Mojave 10.14.6. You can recover a working environment with last jupyterlab version by pinning libffi to 3.3. If someone wants to investigate further, these are two environments with python=3.9.7. The first one is ok (libffi=3.3), the second one gives the segmentation fault (libffi>3.3). A |
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@marcbernot thanks for sharing your workaround |
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@marcbernot a big thank you! |
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I investigated a little further. The pyobjc-core package from conda-forge seems to be the culprit. Indeed if you pin the pyobjc-core version to 8.2 everything is ok. It is starting to fail at 8.4 However you can fix a failing environment (like So the package from pypi works where the one from conda-forge does not. All this looks related to this issue in the feedstock of the conda-forge I think this issue can be closed as it is not related to |
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I relabelled the issue as question instead of closing it. So it is easier to discover in case an user hit this. |
Yep that was the issue for me. Thanks! |
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I'm a complete noob, but I've found that the version of Anaconda3-2021.05-MacOSX-x86_64.pkg that I found on my TimeMachine backup doesn't cause problems on OS X 10.14. |
This worked, thanks |
Is there a way to apply this workaround if my jupyter setup was created via IJulia ? |
This is the fix for me. thank you so much. |
Thank you. This helped me. Downloading an older version is what worked after trying lots of other solutions. |
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Yes this worked for me, I noticed the problem seemed to start with the April 2023 update so I installed the October 2022 update. Works perfectly. |
Thanks a lot! |
Solution to issue cannot be found in the documentation.
Issue
Since april 30, 2023, with Mac OS X 10.14.6 and jupyter installed from conda-forge, I cannot start anymore
jupyter labnorjupyter notebook; I getSegmentation fault: 11.Other users report the same issue at:
Installed packages
# Name Version Build Channel alabaster 0.7.13 pyhd8ed1ab_0 conda-forge anaconda-clean 1.1.0 py39hecd8cb5_1 anyio 3.6.2 pyhd8ed1ab_0 conda-forge appnope 0.1.3 pyhd8ed1ab_0 conda-forge argon2-cffi 21.3.0 pyhd8ed1ab_0 conda-forge argon2-cffi-bindings 21.2.0 py39ha30fb19_3 conda-forge asttokens 2.2.1 pyhd8ed1ab_0 conda-forge async-lru 2.0.2 pyhd8ed1ab_0 conda-forge attrs 23.1.0 pyh71513ae_1 conda-forge babel 2.12.1 pyhd8ed1ab_1 conda-forge backcall 0.2.0 pyh9f0ad1d_0 conda-forge backports 1.0 pyhd8ed1ab_3 conda-forge backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0 conda-forge beautifulsoup4 4.12.2 pyha770c72_0 conda-forge bleach 6.0.0 pyhd8ed1ab_0 conda-forge boltons 23.0.0 pyhd8ed1ab_0 conda-forge brotli 1.0.9 hb7f2c08_8 conda-forge brotli-bin 1.0.9 hb7f2c08_8 conda-forge bzip2 1.0.8 h0d85af4_4 conda-forge c-ares 1.19.1 h0dc2134_0 conda-forge ca-certificates 2023.5.7 h8857fd0_0 conda-forge certifi 2023.5.7 pyhd8ed1ab_0 conda-forge cffi 1.15.1 py39h131948b_3 conda-forge charset-normalizer 3.1.0 pyhd8ed1ab_0 conda-forge colorama 0.4.6 pyhd8ed1ab_0 conda-forge comm 0.1.3 pyhd8ed1ab_0 conda-forge conda 23.3.1 py39h6e9494a_0 conda-forge conda-package-handling 2.0.2 pyh38be061_0 conda-forge conda-package-streaming 0.7.0 pyhd8ed1ab_1 conda-forge cryptography 40.0.2 py39hbeae22c_0 conda-forge debugpy 1.6.7 py39h7a8716b_0 conda-forge decorator 5.1.1 pyhd8ed1ab_0 conda-forge defusedxml 0.7.1 pyhd8ed1ab_0 conda-forge docutils 0.17.1 py39h6e9494a_2 conda-forge entrypoints 0.4 pyhd8ed1ab_0 conda-forge et_xmlfile 1.1.0 pyhd8ed1ab_0 conda-forge executing 1.2.0 pyhd8ed1ab_0 conda-forge flit-core 3.9.0 pyhd8ed1ab_0 conda-forge fmt 9.1.0 hb8565cd_0 conda-forge freetype 2.12.1 h3f81eb7_1 conda-forge icu 70.1 h96cf925_0 conda-forge idna 3.4 pyhd8ed1ab_0 conda-forge imagesize 1.4.1 pyhd8ed1ab_0 conda-forge importlib-metadata 6.6.0 pyha770c72_0 conda-forge importlib_metadata 6.6.0 hd8ed1ab_0 conda-forge importlib_resources 5.12.0 pyhd8ed1ab_0 conda-forge ipycanvas 0.13.1 pyhd8ed1ab_0 conda-forge ipykernel 6.23.1 pyh736e0ef_0 conda-forge ipython 8.13.2 pyhd1c38e8_0 conda-forge ipython_genutils 0.2.0 py_1 conda-forge ipywidgets 8.0.2 pyhd8ed1ab_1 conda-forge jedi 0.18.2 pyhd8ed1ab_0 conda-forge jinja2 3.1.2 pyhd8ed1ab_1 conda-forge json5 0.9.5 pyh9f0ad1d_0 conda-forge jsonpatch 1.32 pyhd8ed1ab_0 conda-forge jsonpointer 2.0 py_0 conda-forge jsonschema 4.17.3 pyhd8ed1ab_0 conda-forge jupyter-lsp 2.1.0 pyhd8ed1ab_0 conda-forge jupyter_client 8.2.0 pyhd8ed1ab_0 conda-forge jupyter_core 5.3.0 py39h6e9494a_0 conda-forge jupyter_events 0.6.3 pyhd8ed1ab_0 conda-forge jupyter_server 2.5.0 pyhd8ed1ab_0 conda-forge jupyter_server_terminals 0.4.4 pyhd8ed1ab_1 conda-forge jupyterlab 4.0.0 pyhd8ed1ab_1 conda-forge jupyterlab_pygments 0.2.2 pyhd8ed1ab_0 conda-forge jupyterlab_server 2.22.1 pyhd8ed1ab_0 conda-forge jupyterlab_widgets 3.0.7 pyhd8ed1ab_1 conda-forge krb5 1.20.1 h049b76e_0 conda-forge lcms2 2.15 h2dcdeff_1 conda-forge lerc 4.0.0 hb486fe8_0 conda-forge libarchive 3.6.2 h6d8d9f1_0 conda-forge libblas 3.9.0 16_osx64_openblas conda-forge libbrotlicommon 1.0.9 hb7f2c08_8 conda-forge libbrotlidec 1.0.9 hb7f2c08_8 conda-forge libbrotlienc 1.0.9 hb7f2c08_8 conda-forge libcblas 3.9.0 16_osx64_openblas conda-forge libcurl 7.88.1 h6df9250_1 conda-forge libcxx 16.0.4 hd57cbcb_0 conda-forge libdeflate 1.18 hac1461d_0 conda-forge libedit 3.1.20191231 h0678c8f_2 conda-forge libev 4.33 haf1e3a3_1 conda-forge libffi 3.4.2 h0d85af4_5 conda-forge libgfortran 5.0.0 11_3_0_h97931a8_31 conda-forge libgfortran5 12.2.0 he409387_31 conda-forge libiconv 1.17 hac89ed1_0 conda-forge libjpeg-turbo 2.1.5.1 hb7f2c08_0 conda-forge liblapack 3.9.0 16_osx64_openblas conda-forge libmamba 1.3.1 h9d281b0_1 conda-forge libmambapy 1.3.1 py39he664332_1 conda-forge libnghttp2 1.52.0 he2ab024_0 conda-forge libopenblas 0.3.21 openmp_h429af6e_3 conda-forge libpng 1.6.39 ha978bb4_0 conda-forge libsodium 1.0.18 hbcb3906_1 conda-forge libsolv 0.7.23 hbc0c0cd_0 conda-forge libsqlite 3.42.0 h58db7d2_0 conda-forge libssh2 1.10.0 h47af595_3 conda-forge libtiff 4.5.0 hedf67fa_6 conda-forge libuv 1.44.2 hac89ed1_0 conda-forge libwebp-base 1.3.0 hb7f2c08_0 conda-forge libxcb 1.15 hb7f2c08_0 conda-forge libxml2 2.10.3 h201ad9d_4 conda-forge libzlib 1.2.13 hfd90126_4 conda-forge llvm-openmp 16.0.4 hff08bdf_0 conda-forge lz4-c 1.9.4 hf0c8a7f_0 conda-forge lzo 2.10 haf1e3a3_1000 conda-forge mamba 1.3.1 py39h412838c_1 conda-forge markupsafe 2.1.2 py39ha30fb19_0 conda-forge matplotlib-inline 0.1.6 pyhd8ed1ab_0 conda-forge mistune 2.0.5 pyhd8ed1ab_0 conda-forge nbclassic 1.0.0 pyhb4ecaf3_1 conda-forge nbclient 0.7.4 pyhd8ed1ab_0 conda-forge nbconvert 7.3.1 pyhd8ed1ab_0 conda-forge nbconvert-core 7.3.1 pyhd8ed1ab_0 conda-forge nbconvert-pandoc 7.3.1 pyhd8ed1ab_0 conda-forge nbformat 5.8.0 pyhd8ed1ab_0 conda-forge nbstripout 0.5.0 pyhd8ed1ab_0 conda-forge ncurses 6.3 h96cf925_1 conda-forge nest-asyncio 1.5.6 pyhd8ed1ab_0 conda-forge nodejs 18.12.1 hd0c9b3c_0 conda-forge notebook 6.5.4 pyha770c72_0 conda-forge notebook-shim 0.2.3 pyhd8ed1ab_0 conda-forge numpy 1.24.3 py39h892e69a_0 conda-forge openjpeg 2.5.0 h13ac156_2 conda-forge openpyxl 3.0.9 pyhd3eb1b0_0 openssl 3.1.0 h8a1eda9_3 conda-forge packaging 23.1 pyhd8ed1ab_0 conda-forge pandas 1.5.3 py39hecff1ad_0 conda-forge pandoc 2.19.2 h694c41f_1 conda-forge pandocfilters 1.5.0 pyhd8ed1ab_0 conda-forge parso 0.8.3 pyhd8ed1ab_0 conda-forge pexpect 4.8.0 pyh1a96a4e_2 conda-forge pickleshare 0.7.5 py_1003 conda-forge pillow 9.5.0 py39he6683de_1 conda-forge pip 23.1.2 pyhd8ed1ab_0 conda-forge pkgutil-resolve-name 1.3.10 pyhd8ed1ab_0 conda-forge platformdirs 3.5.1 pyhd8ed1ab_0 conda-forge pluggy 1.0.0 pyhd8ed1ab_5 conda-forge prometheus_client 0.16.0 pyhd8ed1ab_0 conda-forge prompt-toolkit 3.0.38 pyha770c72_0 conda-forge prompt_toolkit 3.0.38 hd8ed1ab_0 conda-forge psutil 5.9.5 py39ha30fb19_0 conda-forge pthread-stubs 0.4 hc929b4f_1001 conda-forge ptyprocess 0.7.0 pyhd3deb0d_0 conda-forge pure_eval 0.2.2 pyhd8ed1ab_0 conda-forge pybind11-abi 4 hd8ed1ab_3 conda-forge pycosat 0.6.4 py39ha30fb19_1 conda-forge pycparser 2.21 pyhd8ed1ab_0 conda-forge pygments 2.15.1 pyhd8ed1ab_0 conda-forge pyobjc-core 9.1.1 py39h0504f80_0 conda-forge pyobjc-framework-cocoa 9.1.1 py39h0504f80_0 conda-forge pyopenssl 23.1.1 pyhd8ed1ab_0 conda-forge pyparsing 3.0.9 pyhd8ed1ab_0 conda-forge pyrsistent 0.19.3 py39ha30fb19_0 conda-forge pysocks 1.7.1 pyha2e5f31_6 conda-forge python 3.9.12 h1cc4136_1_cpython conda-forge python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge python-fastjsonschema 2.17.1 pyhd8ed1ab_0 conda-forge python-json-logger 2.0.7 pyhd8ed1ab_0 conda-forge python.app 3 py39hca72f7f_0 python_abi 3.9 3_cp39 conda-forge pytz 2023.3 pyhd8ed1ab_0 conda-forge pyyaml 6.0 py39ha30fb19_5 conda-forge pyzmq 25.0.2 py39hed8f129_0 conda-forge readline 8.2 h9e318b2_1 conda-forge reproc 14.2.4 hb7f2c08_0 conda-forge reproc-cpp 14.2.4 hf0c8a7f_0 conda-forge requests 2.31.0 pyhd8ed1ab_0 conda-forge rfc3339-validator 0.1.4 pyhd8ed1ab_0 conda-forge rfc3986-validator 0.1.1 pyh9f0ad1d_0 conda-forge rise 5.7.1 py39h6e9494a_2 conda-forge ruamel.yaml 0.17.26 py39hdc70f33_0 conda-forge ruamel.yaml.clib 0.2.7 py39ha30fb19_1 conda-forge send2trash 1.8.2 pyhd1c38e8_0 conda-forge setuptools 67.7.2 pyhd8ed1ab_0 conda-forge six 1.16.0 pyh6c4a22f_0 conda-forge sniffio 1.3.0 pyhd8ed1ab_0 conda-forge snowballstemmer 2.2.0 pyhd8ed1ab_0 conda-forge soupsieve 2.3.2.post1 pyhd8ed1ab_0 conda-forge sphinx 4.4.0 pyhd3eb1b0_0 sphinxcontrib-applehelp 1.0.4 pyhd8ed1ab_0 conda-forge sphinxcontrib-devhelp 1.0.2 py_0 conda-forge sphinxcontrib-htmlhelp 2.0.1 pyhd8ed1ab_0 conda-forge sphinxcontrib-jsmath 1.0.1 py_0 conda-forge sphinxcontrib-qthelp 1.0.3 py_0 conda-forge sphinxcontrib-serializinghtml 1.1.5 pyhd8ed1ab_2 conda-forge sqlite 3.42.0 h2b0dec6_0 conda-forge stack_data 0.6.2 pyhd8ed1ab_0 conda-forge terminado 0.17.1 pyhd1c38e8_0 conda-forge tinycss2 1.2.1 pyhd8ed1ab_0 conda-forge tk 8.6.12 h5dbffcc_0 conda-forge tomli 2.0.1 pyhd8ed1ab_0 conda-forge toolz 0.12.0 pyhd8ed1ab_0 conda-forge tornado 6.3.2 py39hdc70f33_0 conda-forge tqdm 4.65.0 pyhd8ed1ab_1 conda-forge traitlets 5.9.0 pyhd8ed1ab_0 conda-forge typing-extensions 4.5.0 hd8ed1ab_0 conda-forge typing_extensions 4.5.0 pyha770c72_0 conda-forge tzdata 2023c h71feb2d_0 conda-forge urllib3 2.0.2 pyhd8ed1ab_0 conda-forge wcwidth 0.2.6 pyhd8ed1ab_0 conda-forge webencodings 0.5.1 py_1 conda-forge websocket-client 1.5.2 pyhd8ed1ab_0 conda-forge wheel 0.40.0 pyhd8ed1ab_0 conda-forge widgetsnbextension 4.0.3 pyhd8ed1ab_0 conda-forge xorg-libxau 1.0.11 h0dc2134_0 conda-forge xorg-libxdmcp 1.1.3 h35c211d_0 conda-forge xz 5.2.6 h775f41a_0 conda-forge yaml 0.2.5 h0d85af4_2 conda-forge yaml-cpp 0.7.0 hf0c8a7f_2 conda-forge zeromq 4.3.4 he49afe7_1 conda-forge zipp 3.15.0 pyhd8ed1ab_0 conda-forge zlib 1.2.13 hfd90126_4 conda-forge zstandard 0.19.0 py39h5bcbcff_1 conda-forge zstd 1.5.2 hbc0c0cd_6 conda-forgeEnvironment info
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