From 83a1f8a9888022a24a02821ab83a11c51aeb4f98 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Mon, 26 Jun 2023 19:51:32 +0200 Subject: [PATCH] Designate GY.1 (XBB.1.16.2.1, S:L84I, ORF1a:A4068S, China, from #2066) with 80 seqs Resolves #2066 --- lineage_notes.txt | 1 + lineages.csv | 161 +++++++++++++++++++++++++++++++ pango_designation/alias_key.json | 1 + 3 files changed, 163 insertions(+) diff --git a/lineage_notes.txt b/lineage_notes.txt index 5a5b7910..f0bc8233 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2855,6 +2855,7 @@ FU.1 Alias of XBB.1.16.1.1, T3802C FU.2 Alias of XBB.1.16.1.2, C8692T FU.2.1 Alias of XBB.1.16.1.2.1, S:E619Q, Vietnam XBB.1.16.2 Defined by ORF3a:V13L, ORF1a:P926H, India +GY.1 Alias of XBB.1.16.2.1, S:L84I, ORF1a:A4068S, China, from #2066 XBB.1.16.3 Defined by A2893C, India XBB.1.16.4 Defined by S:T678I, India, from #1903 XBB.1.16.5 Defined by T9991C,C16332T, India, from #1983 diff --git a/lineages.csv b/lineages.csv index 13c746ef..5d625321 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2425531,3 +2425531,164 @@ USA/NY-CDC-QDX80784011/2023,GW.2 USA/NY-CDC-QDX80565064/2023,GW.2 USA/NY-CDC-QDX80832688/2023,GW.2 USA/CT-CDC-QDX80963430/2023,GW.2 +CHN/FZ23LG2272/2023,GY.1 +CHN/FX40/2023,GY.1 +CHN/GYCDC-CX2023126/2023,GY.1 +Yunnan/YNCDC-1356/2023,GY.1 +Hubei/HCDC-YC2072/2023,GY.1 +Austria/AGES-1140068/2023,GY.1 +Yunnan/YNCDC-0660/2023,GY.1 +Fujian/FCDC-FZLG2272/2023,GY.1 +Guangdong/GDCDC_CZ_0115/2023,GY.1 +Guangdong/GDCDC_SW_0091/2023,GY.1 +Yunnan/YNCDC-0578/2023,GY.1 +Yunnan/YNCDC-0576/2023,GY.1 +Hubei/HCDC-YC1299/2023,GY.1 +Hubei/HCDC-WH1279/2023,GY.1 +Hubei/HCDC-WH0986/2023,GY.1 +CHN/YNCDC-0660/2023,GY.1 +CHN/SXJCCDC-JCCX230229/2023,GY.1 +Guangdong/GDCDC_CZ_0118/2023,GY.1 +CHN/HB-Wuhan-0986/2023,GY.1 +Hubei/HCDC-Y1299/2023,GY.1 +Hubei/HCDC-W0986/2023,GY.1 +Hubei/HCDC-W1279/2023,GY.1 +CHN/YBSCDC-2023XGCX168/2023,GY.1 +Sichuan/YBCDC-XGCX168/2023,GY.1 +Shanghai/SCDC-3239/2023,GY.1 +CHN/HB-Yichang-1299/2023,GY.1 +CHN/HB-Wuhan-1279/2023,GY.1 +Shanghai/SCDC-XG05-3859/2023,GY.1 +CHN/SXJCCDC-JCCX230129/2023,GY.1 +CHN/YNCDC-0576/2023,GY.1 +CHN/YNCDC-0578/2023,GY.1 +CHN/HB-Enshi-1483/2023,GY.1 +Shanxi/JCCDC-JCCX0129/2023,GY.1 +Anhui/SZCDC-FX40/2023,GY.1 +Sichuan/GYCDC-CX126/2023,GY.1 +Shanghai/SCDC-XG05-6676/2023,GY.1 +CHN/SH-XG2305-6676/2023,GY.1 +Yunnan/YNCDC-0819/2023,GY.1 +CHN/NJCDC-20230517-7/2023,GY.1 +Sichuan/NJCDC-0517-7/2023,GY.1 +Sichuan/NJCDC-0517-2/2023,GY.1 +CHN/NJCDC-20230517-2/2023,GY.1 +Taiwan/CDC-W26798/2023,GY.1 +CHN/GDCDC_CZ_0115/2023,GY.1 +CHN/GDCDC_CZ_0118/2023,GY.1 +CHN/GDCDC_SW_0091/2023,GY.1 +CHN/SH-XG2304-3239/2023,GY.1 +Hubei/HCDC-ES1483/2023,GY.1 +Yunnan/YNCDC-1013/2023,GY.1 +CHN/YNCDC-1013/2023,GY.1 +Yunnan/YNCDC-1092/2023,GY.1 +CHN/YNCDC-1092/2023,GY.1 +Shanghai/SCDC-XG05-4110/2023,GY.1 +Fujian/FCDC-SM06007/2023,GY.1 +CHN/SM202306007/2023,GY.1 +Anhui/HFCDC-485/2023,GY.1 +CHN/HFCDC-2023-485/2023,GY.1 +Yunnan/YNCDC-1029/2023,GY.1 +CHN/YNCDC-1029/2023,GY.1 +Yunnan/YNCDC-0959/2023,GY.1 +CHN/YNCDC-0959/2023,GY.1 +Xinjiang/XJCDC-HT037/2023,GY.1 +Shanghai/SCDC-XG05-5668/2023,GY.1 +Xinjiang/XJCDC-WLMQ-242/2023,GY.1 +USA/CA-GBW-H20-314-0389/2023,GY.1 +South_Korea/KDCA239273/2023,GY.1 +SouthKorea/KDCA239273/2023,GY.1 +USA/NY-PRL-230601_81A11/2023,GY.1 +USA/NY-CDC-QDX81183308/2023,GY.1 +Yunnan/YNCDC-0838/2023,GY.1 +Heilongjiang/HLJCDC-1235/2023,GY.1 +Henan/ZKCDC-47/2023,GY.1 +CHN/ZKCDC-47/2023,GY.1 +CHN/HB-Huanggang-1787/2023,GY.1 +Hubei/HCDC-HG1787/2023,GY.1 +Hubei/HCDC-ES1503/2023,GY.1 +CHN/HB-Enshi-1503/2023,GY.1 +CHN/HB-Xiaogan-1311/2023,GY.1 +Hubei/HCDC-XG1311/2023,GY.1 +Hubei/HCDC-ES1612/2023,GY.1 +CHN/HB-Enshi-1612/2023,GY.1 +CHN/SH-XG2305-6825/2023,GY.1 +Shanghai/SCDC-XG05-6825/2023,GY.1 +CHN/SH-HG20230605-1714/2023,GY.1 +Shanghai/SCDC-HG0605-1714/2023,GY.1 +Shanghai/SCDC-HG0529-1277/2023,GY.1 +CHN/SH-HG20230529-1277/2023,GY.1 +CHN/HB-Wuhan-1821/2023,GY.1 +Hubei/HCDC-WH1821/2023,GY.1 +Yunnan/YNCDC-0733/2023,GY.1 +Yunnan/YNCDC-0686/2023,GY.1 +CHN/YNCDC-0686/2023,GY.1 +Singapore/R37MR136/2023,GY.1 +Singapore/R35MR120/2023,GY.1 +CHN/HB-Xianning-1126/2023,GY.1 +Hubei/HCDC-XI1126/2023,GY.1 +Hubei/HCDC-XN1126/2023,GY.1 +Hubei/HCDC-1016/2023,GY.1 +CHN/HB-Huanggang-1016/2023,GY.1 +CHN/QH-QHSYY-457/2023,GY.1 +Yunnan/YNCDC-1360/2023,GY.1 +Qinghai/QCDC-QHSYY-457/2023,GY.1 +Yunnan/YNCDC-0963/2023,GY.1 +CHN/YNCDC-0963/2023,GY.1 +CHN/XG2305-4986/2023,GY.1 +CHN/XG2305-4987/2023,GY.1 +Shanghai/SCDC-XG05-4986/2023,GY.1 +Shanghai/SCDC-XG05-4987/2023,GY.1 +Shanghai/SCDC-XG05-4988/2023,GY.1 +CHN/XG2305-4988/2023,GY.1 +Fujian/FCDC-QZ05S013/2023,GY.1 +CHN/QZ202305S013/2023,GY.1 +Sweden/49350939LX/2023,GY.1 +Sweden/49348013LX/2023,GY.1 +Hubei/HCDC-1186/2023,GY.1 +CHN/HB-Jingzhou-1186/2023,GY.1 +CHN/JXFZ-238/2023,GY.1 +Jiangxi/JXFZ-238/2023,GY.1 +Shanghai/SCDC-HG0524-1164/2023,GY.1 +CHN/YASCDC-XGCX2023071/2023,GY.1 +Sichuan/YASCDC-XGCX071/2023,GY.1 +Sichuan/YACDC-XGCX082/2023,GY.1 +CHN/YACDC-XGCX2023082/2023,GY.1 +Sichuan/ZGCDC-XGZG226/2023,GY.1 +CHN/ZGCDC-XGZG2023226/2023,GY.1 +Australia/SA542524/2023,GY.1 +Shanghai/SCDC-HG0608-1845/2023,GY.1 +Shanghai/SCDC-HG0608-1862/2023,GY.1 +CHN/SH-HG20230608-1845/2023,GY.1 +CHN/SH-HG20230608-1832/2023,GY.1 +Shanghai/SCDC-HG0608-1850/2023,GY.1 +Shanghai/SCDC-HG0608-1838/2023,GY.1 +CHN/SH-HG20230608-1838/2023,GY.1 +CHN/SH-HG20230608-1822/2023,GY.1 +CHN/SH-HG20230608-1850/2023,GY.1 +Shanghai/SCDC-HG0608-1822/2023,GY.1 +Shanghai/SCDC-HG0608-1832/2023,GY.1 +CHN/SH-HG20230608-1834/2023,GY.1 +Shanghai/SCDC-HG0608-1834/2023,GY.1 +CHN/SH-HG20230608-1862/2023,GY.1 +CHN/CDCDC-2023-19-CX1646/2023,GY.1 +Sichuan/CDCDC-19-CX1646/2023,GY.1 +Anhui/LACDC-085/2023,GY.1 +Shanxi/SXCDC-0381/2023,GY.1 +CHN/ZYCDC-YJ20230246/2023,GY.1 +CHN/LACDC-085/2023,GY.1 +CHN/ZGCDC-zgxg2023268/2023,GY.1 +Sichuan/ZGCDC-zgxg268/2023,GY.1 +Sichuan/ZYCDC-YJ0246/2023,GY.1 +CHN/SXCDC-0381/2023,GY.1 +Xinjiang/XJCDC-HT059/2023,GY.1 +CHN/DYCDC-DYCDC2023067/2023,GY.1 +Sichuan/DYCDC-067/2023,GY.1 +CHN/HP-XG-20230507-1/2023,GY.1 +Shanghai/SCDC-HP-XG-0507-1/2023,GY.1 +Jiangxi/JXPX-044/2023,GY.1 +CHN/JXPX-044/2023,GY.1 +CHN/HB-Xiangyang-1218/2023,GY.1 +Hubei/HCDC-1218/2023,GY.1 +Hubei/HCDC-1093/2023,GY.1 +CHN/HB-Yichang-1093/2023,GY.1 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index 15330a40..25350207 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -175,6 +175,7 @@ "GU": "XBB.1.5.41", "GV": "XBB.1.5.48", "GW": "XBB.1.19.1", + "GY": "XBB.1.16.2", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"],