TODO

[cpockrandt]

• add clang support
• add tests for gtf annotation to travis
• Option --dry: tells which species cannot be mapped. suggest which model is the best and outputs a --species string to speed up computation
• weighted mean PhyloCSF scores instead of the mean score in annotation tools
• maf format: support tab-separation and missing scores (i.e. "a\n" lines)
• print output file path instead of just "Done"
• Check other libraries other than cblas, such as OpenBLAS

@martin-steinegger Can you look into this:

• FAQ in wiki for annotate-with-mmseqs
• add mmseqs params in phylocsf++ and forward them to mmseqs