PhyloCSF++ v1.2.0

• fixed crashes in annotate-with-mmseqs
• reversed supposed bug-fix that actually introduced a bug when omitting PhyloCSF scores below the given threshold on the negative strand (affects build-tracks)
• updated citation reference

PhyloCSF++ v1.1.1

• fixed a crash when building smoothed tracks
• off-by-one bug when computing the power to omit PhyloCSF scores below the given threshold

PhyloCSF++ v1.1.0

Major changes:

• New feature: "find-cds" module (determine most likely CDS given a transcript using PhyloCSF scores)
• New feature: "build-tracks" now outputs PhyloCSF*Regions.bed files for each frame
• Improvement: "build-tracks" has now a much better parallelization and less I/O operations
• Bug: "build-tracks" had an off-by-one error for base positions in PhyloCSFpower.wig

PhyloCSF++ v1.0.0

bump version

Pre-release of PhyloCSF++ (v0.9.0)

Pre-release v0.9.0