diff --git a/pom.xml b/pom.xml
index 06a0824..63ce225 100644
--- a/pom.xml
+++ b/pom.xml
@@ -13,13 +13,15 @@
4.12
- 3.3
- 2.5.4
+ 3.5.1
+ 3.2.0
+
+ 2.8.1
org.cytoscape
cx-support
- 0.9.12
+ 1.1.0
CX Support
CX JSON Reader and Writer for Cytoscape
bundle
@@ -161,7 +163,7 @@
com.fasterxml.jackson.core
jackson-databind
- 2.7.4
+ ${jackson.version}
org.cxio
diff --git a/src/test/resources/testData/10_networks.cx b/src/test/resources/testData/10_networks.cx
index 7023de5..c241bfc 100644
--- a/src/test/resources/testData/10_networks.cx
+++ b/src/test/resources/testData/10_networks.cx
@@ -265,7 +265,7 @@
"y" : -109.0
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 162,
"view" : 162,
@@ -401,7 +401,7 @@
"y" : 31.0
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 165,
"view" : 165,
@@ -537,7 +537,7 @@
"y" : -36.19614791870117
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 168,
"view" : 168,
@@ -673,7 +673,7 @@
"y" : -68.43471878571648
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 171,
"view" : 171,
@@ -809,7 +809,7 @@
"y" : -24.197526931762695
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 174,
"view" : 174,
@@ -945,7 +945,7 @@
"y" : -103.48582560435533
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 177,
"view" : 177,
@@ -1081,7 +1081,7 @@
"y" : -152.96138281665912
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 180,
"view" : 180,
@@ -1217,7 +1217,7 @@
"y" : -93.3991928100586
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 183,
"view" : 183,
@@ -1353,7 +1353,7 @@
"y" : -125.73982238769531
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 186,
"view" : 186,
@@ -1489,7 +1489,7 @@
"y" : -56.0
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 189,
"view" : 189,
@@ -1618,7 +1618,7 @@
}
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
"@id" : 52,
"nodes" : [ 152 ],
"edges" : [ ]
@@ -1692,7 +1692,7 @@
"s" : 142
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 52,
"c" : 162,
"r" : "view",
@@ -1803,7 +1803,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 0,
- "name" : "hiddenAttributes",
+ "name" : "cyHiddenAttributes",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -1827,13 +1827,13 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 30,
- "name" : "visualProperties",
+ "name" : "cyVisualProperties",
"properties" : [ ],
"version" : "1.0"
}, {
"consistencyGroup" : 1,
"elementCount" : 10,
- "name" : "subNetworks",
+ "name" : "cySubNetworks",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -1851,7 +1851,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 20,
- "name" : "networkRelations",
+ "name" : "cyNetworkRelations",
"properties" : [ ],
"version" : "1.0"
} ]
@@ -1860,4 +1860,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/Hox_NVC4.cx b/src/test/resources/testData/Hox_NVC4.cx
index 31d2a37..5934792 100644
--- a/src/test/resources/testData/Hox_NVC4.cx
+++ b/src/test/resources/testData/Hox_NVC4.cx
@@ -400,7 +400,7 @@
"d" : "boolean"
} ]
}, {
- "hiddenAttributes" : [ {
+ "cyHiddenAttributes" : [ {
"s" : 52,
"n" : "__layoutAlgorithm",
"v" : "Edge-Weighted Force-Directed AllegroLayout"
@@ -2102,7 +2102,7 @@
"y" : -36.0
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 127,
"view" : 127,
@@ -3182,7 +3182,7 @@
}
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
"@id" : 52,
"nodes" : [ 93, 92, 91, 90, 89, 88, 87, 86, 85, 84, 83, 82, 81, 80, 79, 78, 77, 76, 75, 74, 73, 72, 71, 70, 69, 68, 67, 66, 65, 64, 63, 62 ],
"edges" : [ 126, 125, 124, 123, 122, 121, 120, 119, 118, 117, 116, 115, 114, 113, 112, 111, 110, 109, 108, 107, 106, 105, 104, 103, 102, 101, 100, 99, 98, 97, 96, 95, 94 ]
@@ -3193,7 +3193,7 @@
"s" : 52
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 52,
"c" : 127,
"r" : "view",
@@ -3214,7 +3214,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 1,
- "name" : "hiddenAttributes",
+ "name" : "cyHiddenAttributes",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -3238,13 +3238,13 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 68,
- "name" : "visualProperties",
+ "name" : "cyVisualProperties",
"properties" : [ ],
"version" : "1.0"
}, {
"consistencyGroup" : 1,
"elementCount" : 1,
- "name" : "subNetworks",
+ "name" : "cySubNetworks",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -3262,7 +3262,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 2,
- "name" : "networkRelations",
+ "name" : "cyNetworkRelations",
"properties" : [ ],
"version" : "1.0"
} ]
@@ -3271,4 +3271,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/c_elegans.cx b/src/test/resources/testData/c_elegans.cx
index 1e81571..fad2a6f 100644
--- a/src/test/resources/testData/c_elegans.cx
+++ b/src/test/resources/testData/c_elegans.cx
@@ -818915,7 +818915,7 @@
"y" : 199.62576787891012
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 18700,
"view" : 18700,
@@ -819044,7 +819044,7 @@
}
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
"@id" : 6107,
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@@ -819055,7 +819055,7 @@
"s" : 6107
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 6107,
"c" : 18700,
"r" : "view",
@@ -819076,7 +819076,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 0,
- "name" : "hiddenAttributes",
+ "name" : "cyHiddenAttributes",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -819100,13 +819100,13 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 3,
- "name" : "visualProperties",
+ "name" : "cyVisualProperties",
"properties" : [ ],
"version" : "1.0"
}, {
"consistencyGroup" : 1,
"elementCount" : 1,
- "name" : "subNetworks",
+ "name" : "cySubNetworks",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -819124,7 +819124,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 2,
- "name" : "networkRelations",
+ "name" : "cyNetworkRelations",
"properties" : [ ],
"version" : "1.0"
} ]
@@ -819133,4 +819133,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/collection_1.cx b/src/test/resources/testData/collection_1.cx
index f221444..5f2f254 100644
--- a/src/test/resources/testData/collection_1.cx
+++ b/src/test/resources/testData/collection_1.cx
@@ -299,7 +299,7 @@
"y" : -71.0
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 94,
"view" : 94,
@@ -459,7 +459,7 @@
"y" : -126.0
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 99,
"view" : 99,
@@ -600,7 +600,7 @@
"y" : -30.0
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 107,
"view" : 107,
@@ -729,7 +729,7 @@
}
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
"@id" : 52,
"nodes" : [ 83, 82 ],
"edges" : [ 84 ]
@@ -754,7 +754,7 @@
"s" : 72
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 52,
"c" : 94,
"r" : "view",
@@ -795,7 +795,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 0,
- "name" : "hiddenAttributes",
+ "name" : "cyHiddenAttributes",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -819,13 +819,13 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 11,
- "name" : "visualProperties",
+ "name" : "cyVisualProperties",
"properties" : [ ],
"version" : "1.0"
}, {
"consistencyGroup" : 1,
"elementCount" : 3,
- "name" : "subNetworks",
+ "name" : "cySubNetworks",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -843,7 +843,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 6,
- "name" : "networkRelations",
+ "name" : "cyNetworkRelations",
"properties" : [ ],
"version" : "1.0"
} ]
@@ -852,4 +852,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/collection_2.cx b/src/test/resources/testData/collection_2.cx
index 15157b8..1cadac1 100644
--- a/src/test/resources/testData/collection_2.cx
+++ b/src/test/resources/testData/collection_2.cx
@@ -1516,7 +1516,7 @@
"y" : -89.0
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 309,
"view" : 309,
@@ -1678,7 +1678,7 @@
"y" : -92.0
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 314,
"view" : 314,
@@ -1855,7 +1855,7 @@
"y" : -93.0
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 331,
"view" : 331,
@@ -2012,7 +2012,7 @@
"y" : -41.0
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 369,
"view" : 369,
@@ -2147,7 +2147,7 @@
}
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
"@id" : 205,
"nodes" : [ 246, 245 ],
"edges" : [ 247 ]
@@ -2179,7 +2179,7 @@
"s" : 235
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 205,
"c" : 309,
"r" : "view",
@@ -2230,7 +2230,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 0,
- "name" : "hiddenAttributes",
+ "name" : "cyHiddenAttributes",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -2254,13 +2254,13 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 12,
- "name" : "visualProperties",
+ "name" : "cyVisualProperties",
"properties" : [ ],
"version" : "1.0"
}, {
"consistencyGroup" : 1,
"elementCount" : 4,
- "name" : "subNetworks",
+ "name" : "cySubNetworks",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -2278,7 +2278,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 8,
- "name" : "networkRelations",
+ "name" : "cyNetworkRelations",
"properties" : [ ],
"version" : "1.0"
} ]
@@ -2287,4 +2287,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/gal_filtered_1.cx b/src/test/resources/testData/gal_filtered_1.cx
index b1a32eb..dfb1c49 100644
--- a/src/test/resources/testData/gal_filtered_1.cx
+++ b/src/test/resources/testData/gal_filtered_1.cx
@@ -65186,7 +65186,7 @@
"y" : 2393.3219489762514
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 3981,
"view" : 3981,
@@ -65327,7 +65327,7 @@
}
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
"@id" : 3278,
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@@ -65338,7 +65338,7 @@
"s" : 3278
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 3278,
"c" : 3981,
"r" : "view",
@@ -65359,7 +65359,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 0,
- "name" : "hiddenAttributes",
+ "name" : "cyHiddenAttributes",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -65383,13 +65383,13 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 3,
- "name" : "visualProperties",
+ "name" : "cyVisualProperties",
"properties" : [ ],
"version" : "1.0"
}, {
"consistencyGroup" : 1,
"elementCount" : 1,
- "name" : "subNetworks",
+ "name" : "cySubNetworks",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -65407,7 +65407,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 2,
- "name" : "networkRelations",
+ "name" : "cyNetworkRelations",
"properties" : [ ],
"version" : "1.0"
} ]
@@ -65416,4 +65416,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/gal_filtered_2.cx b/src/test/resources/testData/gal_filtered_2.cx
index f7453d2..5db7511 100644
--- a/src/test/resources/testData/gal_filtered_2.cx
+++ b/src/test/resources/testData/gal_filtered_2.cx
@@ -63195,7 +63195,7 @@
"y" : 3597.162113253202
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 1152,
"view" : 1152,
@@ -63332,7 +63332,7 @@
}
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
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@@ -63343,7 +63343,7 @@
"s" : 449
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 449,
"c" : 1152,
"r" : "view",
@@ -63364,7 +63364,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 0,
- "name" : "hiddenAttributes",
+ "name" : "cyHiddenAttributes",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -63388,13 +63388,13 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 3,
- "name" : "visualProperties",
+ "name" : "cyVisualProperties",
"properties" : [ ],
"version" : "1.0"
}, {
"consistencyGroup" : 1,
"elementCount" : 1,
- "name" : "subNetworks",
+ "name" : "cySubNetworks",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -63412,7 +63412,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 2,
- "name" : "networkRelations",
+ "name" : "cyNetworkRelations",
"properties" : [ ],
"version" : "1.0"
} ]
@@ -63421,4 +63421,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/gal_filtered_3.cx b/src/test/resources/testData/gal_filtered_3.cx
index 7d34068..3c73a89 100644
--- a/src/test/resources/testData/gal_filtered_3.cx
+++ b/src/test/resources/testData/gal_filtered_3.cx
@@ -63201,7 +63201,7 @@
"y" : 3597.162113253202
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 1152,
"view" : 1152,
@@ -63338,7 +63338,7 @@
}
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
"@id" : 449,
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@@ -63349,7 +63349,7 @@
"s" : 449
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 449,
"c" : 1152,
"r" : "view",
@@ -63370,7 +63370,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 0,
- "name" : "hiddenAttributes",
+ "name" : "cyHiddenAttributes",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -63394,13 +63394,13 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 3,
- "name" : "visualProperties",
+ "name" : "cyVisualProperties",
"properties" : [ ],
"version" : "1.0"
}, {
"consistencyGroup" : 1,
"elementCount" : 1,
- "name" : "subNetworks",
+ "name" : "cySubNetworks",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -63418,7 +63418,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 2,
- "name" : "networkRelations",
+ "name" : "cyNetworkRelations",
"properties" : [ ],
"version" : "1.0"
} ]
@@ -63427,4 +63427,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/groups_1.cx b/src/test/resources/testData/groups_1.cx
index 2ce91fe..4724e5b 100644
--- a/src/test/resources/testData/groups_1.cx
+++ b/src/test/resources/testData/groups_1.cx
@@ -201,7 +201,7 @@
"y" : -12.0
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 1000,
"view" : 1000,
@@ -318,7 +318,7 @@
}
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
"@id" : 147,
"nodes" : [ 167, 165, 163, 161, 159 ],
"edges" : [ 172, 178, 171, 170, 176 ]
@@ -329,7 +329,7 @@
"s" : 147
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 131,
"c" : 147,
"r" : "subnetwork",
@@ -349,7 +349,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 0,
- "name" : "hiddenAttributes",
+ "name" : "cyHiddenAttributes",
"version" : "1.0"
}, {
"consistencyGroup" : 1,
@@ -369,12 +369,12 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 3,
- "name" : "visualProperties",
+ "name" : "cyVisualProperties",
"version" : "1.0"
}, {
"consistencyGroup" : 1,
"elementCount" : 1,
- "name" : "subNetworks",
+ "name" : "cySubNetworks",
"version" : "1.0"
}, {
"consistencyGroup" : 1,
@@ -389,7 +389,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 2,
- "name" : "networkRelations",
+ "name" : "cyNetworkRelations",
"version" : "1.0"
} ]
}, {
@@ -397,4 +397,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/mapping_types.cx b/src/test/resources/testData/mapping_types.cx
index eedb1f5..a88836b 100644
--- a/src/test/resources/testData/mapping_types.cx
+++ b/src/test/resources/testData/mapping_types.cx
@@ -135,7 +135,7 @@
"y" : -23.0
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 377,
"view" : 377,
@@ -280,7 +280,7 @@
}
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
"@id" : 365,
"nodes" : [ 376, 375 ],
"edges" : [ ]
@@ -291,7 +291,7 @@
"s" : 365
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 365,
"c" : 377,
"r" : "view",
@@ -312,7 +312,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 0,
- "name" : "hiddenAttributes",
+ "name" : "cyHiddenAttributes",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -336,13 +336,13 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 3,
- "name" : "visualProperties",
+ "name" : "cyVisualProperties",
"properties" : [ ],
"version" : "1.0"
}, {
"consistencyGroup" : 1,
"elementCount" : 1,
- "name" : "subNetworks",
+ "name" : "cySubNetworks",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -360,7 +360,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 2,
- "name" : "networkRelations",
+ "name" : "cyNetworkRelations",
"properties" : [ ],
"version" : "1.0"
} ]
@@ -369,4 +369,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/ndex1.cx b/src/test/resources/testData/ndex1.cx
index b856107..90adacd 100644
--- a/src/test/resources/testData/ndex1.cx
+++ b/src/test/resources/testData/ndex1.cx
@@ -20,7 +20,7 @@
"name" : "networkAttributes"
}, {
"elementCount" : 0,
- "name" : "hiddenAttributes"
+ "name" : "cyHiddenAttributes"
}, {
"elementCount" : 5,
"name" : "nodeAttributes"
@@ -32,10 +32,10 @@
"name" : "cartesianLayout"
}, {
"elementCount" : 6,
- "name" : "visualProperties"
+ "name" : "cyVisualProperties"
}, {
"elementCount" : 2,
- "name" : "subNetworks"
+ "name" : "cySubNetworks"
}, {
"elementCount" : 2,
"name" : "cyViews"
@@ -44,7 +44,7 @@
"name" : "cyGroups"
}, {
"elementCount" : 4,
- "name" : "networkRelations"
+ "name" : "cyNetworkRelations"
} ]
}, {
"ndexStatus" : [ {
@@ -319,7 +319,7 @@
"y" : -112.0
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
"@id" : 52,
"nodes" : [ 78, 76 ],
"edges" : [ 92 ]
@@ -337,7 +337,7 @@
"s" : 64
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 36,
"c" : 52,
"r" : "subnetwork",
@@ -359,7 +359,7 @@
"name" : "B view"
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 52,
"view" : 52,
@@ -597,4 +597,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/ndex2.cx b/src/test/resources/testData/ndex2.cx
index 32f77ae..4fe7406 100644
--- a/src/test/resources/testData/ndex2.cx
+++ b/src/test/resources/testData/ndex2.cx
@@ -20,7 +20,7 @@
"name" : "networkAttributes"
}, {
"elementCount" : 0,
- "name" : "hiddenAttributes"
+ "name" : "cyHiddenAttributes"
}, {
"elementCount" : 5,
"name" : "nodeAttributes"
@@ -32,10 +32,10 @@
"name" : "cartesianLayout"
}, {
"elementCount" : 6,
- "name" : "visualProperties"
+ "name" : "cyVisualProperties"
}, {
"elementCount" : 2,
- "name" : "subNetworks"
+ "name" : "cySubNetworks"
}, {
"elementCount" : 2,
"name" : "cyViews"
@@ -44,7 +44,7 @@
"name" : "cyGroups"
}, {
"elementCount" : 4,
- "name" : "networkRelations"
+ "name" : "cyNetworkRelations"
} ]
}, {
"ndexStatus" : [ {
@@ -319,7 +319,7 @@
"y" : -112.0
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
"@id" : 52,
"nodes" : [ 78, 76 ],
"edges" : [ 92 ]
@@ -337,7 +337,7 @@
"s" : 64
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 36,
"c" : 52,
"r" : "subnetwork",
@@ -359,7 +359,7 @@
"name" : "B view"
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 2000,
"view" : 2000,
@@ -597,4 +597,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/ndex3.cx b/src/test/resources/testData/ndex3.cx
index b856107..90adacd 100644
--- a/src/test/resources/testData/ndex3.cx
+++ b/src/test/resources/testData/ndex3.cx
@@ -20,7 +20,7 @@
"name" : "networkAttributes"
}, {
"elementCount" : 0,
- "name" : "hiddenAttributes"
+ "name" : "cyHiddenAttributes"
}, {
"elementCount" : 5,
"name" : "nodeAttributes"
@@ -32,10 +32,10 @@
"name" : "cartesianLayout"
}, {
"elementCount" : 6,
- "name" : "visualProperties"
+ "name" : "cyVisualProperties"
}, {
"elementCount" : 2,
- "name" : "subNetworks"
+ "name" : "cySubNetworks"
}, {
"elementCount" : 2,
"name" : "cyViews"
@@ -44,7 +44,7 @@
"name" : "cyGroups"
}, {
"elementCount" : 4,
- "name" : "networkRelations"
+ "name" : "cyNetworkRelations"
} ]
}, {
"ndexStatus" : [ {
@@ -319,7 +319,7 @@
"y" : -112.0
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
"@id" : 52,
"nodes" : [ 78, 76 ],
"edges" : [ 92 ]
@@ -337,7 +337,7 @@
"s" : 64
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 36,
"c" : 52,
"r" : "subnetwork",
@@ -359,7 +359,7 @@
"name" : "B view"
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 52,
"view" : 52,
@@ -597,4 +597,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/ndex4.cx b/src/test/resources/testData/ndex4.cx
index 90f0e93..aab5a4b 100644
--- a/src/test/resources/testData/ndex4.cx
+++ b/src/test/resources/testData/ndex4.cx
@@ -356,4 +356,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/ndex5.cx b/src/test/resources/testData/ndex5.cx
index 90f0e93..aab5a4b 100644
--- a/src/test/resources/testData/ndex5.cx
+++ b/src/test/resources/testData/ndex5.cx
@@ -356,4 +356,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/nodes_edges_netw_node_atts.cx b/src/test/resources/testData/nodes_edges_netw_node_atts.cx
index 6e8ef6c..acd384c 100644
--- a/src/test/resources/testData/nodes_edges_netw_node_atts.cx
+++ b/src/test/resources/testData/nodes_edges_netw_node_atts.cx
@@ -114,4 +114,4 @@
}
]
}
-]
\ No newline at end of file
+]
diff --git a/src/test/resources/testData/nodes_edges_netw_node_edge_atts.cx b/src/test/resources/testData/nodes_edges_netw_node_edge_atts.cx
index 8404865..9c1c62f 100644
--- a/src/test/resources/testData/nodes_edges_netw_node_edge_atts.cx
+++ b/src/test/resources/testData/nodes_edges_netw_node_edge_atts.cx
@@ -133,4 +133,4 @@
}
]
}
-]
\ No newline at end of file
+]
diff --git a/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords.cx b/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords.cx
index e12e949..a2c6812 100644
--- a/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords.cx
+++ b/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords.cx
@@ -157,4 +157,4 @@
}
]
}
-]
\ No newline at end of file
+]
diff --git a/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords_vis_prop_1.cx b/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords_vis_prop_1.cx
index f79a2f2..1007911 100644
--- a/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords_vis_prop_1.cx
+++ b/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords_vis_prop_1.cx
@@ -158,7 +158,7 @@
]
},
{
- "visualProperties": [
+ "cyVisualProperties": [
{
"properties_of": "nodes",
"applies_to": 1,
@@ -175,4 +175,4 @@
}
]
}
-]
\ No newline at end of file
+]
diff --git a/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords_vis_prop_2.cx b/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords_vis_prop_2.cx
index 71060c6..339f685 100644
--- a/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords_vis_prop_2.cx
+++ b/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords_vis_prop_2.cx
@@ -158,7 +158,7 @@
]
},
{
- "visualProperties": [
+ "cyVisualProperties": [
{
"properties_of": "nodes",
"applies_to": 1,
@@ -181,4 +181,4 @@
}
]
}
-]
\ No newline at end of file
+]
diff --git a/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords_vis_prop_3.cx b/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords_vis_prop_3.cx
index 2724856..f7ff28b 100644
--- a/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords_vis_prop_3.cx
+++ b/src/test/resources/testData/nodes_edges_netw_node_edge_atts_coords_vis_prop_3.cx
@@ -158,7 +158,7 @@
]
},
{
- "visualProperties": [
+ "cyVisualProperties": [
{
"properties_of": "nodes",
"applies_to": 1,
@@ -222,4 +222,4 @@
}
]
}
-]
\ No newline at end of file
+]
diff --git a/src/test/resources/testData/nodes_edges_network_atts.cx b/src/test/resources/testData/nodes_edges_network_atts.cx
index d0474aa..bfe6a3b 100644
--- a/src/test/resources/testData/nodes_edges_network_atts.cx
+++ b/src/test/resources/testData/nodes_edges_network_atts.cx
@@ -49,4 +49,4 @@
}
]
}
-]
\ No newline at end of file
+]
diff --git a/src/test/resources/testData/nodes_edges_only.cx b/src/test/resources/testData/nodes_edges_only.cx
index 6ab2e26..1afe573 100644
--- a/src/test/resources/testData/nodes_edges_only.cx
+++ b/src/test/resources/testData/nodes_edges_only.cx
@@ -41,4 +41,4 @@
}
]
}
-]
\ No newline at end of file
+]
diff --git a/src/test/resources/testData/nodes_edges_with_n_i.cx b/src/test/resources/testData/nodes_edges_with_n_i.cx
index 9309592..4911b78 100644
--- a/src/test/resources/testData/nodes_edges_with_n_i.cx
+++ b/src/test/resources/testData/nodes_edges_with_n_i.cx
@@ -54,4 +54,4 @@
}
]
}
-]
\ No newline at end of file
+]
diff --git a/src/test/resources/testData/nodes_edges_with_n_r_i.cx b/src/test/resources/testData/nodes_edges_with_n_r_i.cx
index f98661b..a6cead6 100644
--- a/src/test/resources/testData/nodes_edges_with_n_r_i.cx
+++ b/src/test/resources/testData/nodes_edges_with_n_r_i.cx
@@ -58,4 +58,4 @@
}
]
}
-]
\ No newline at end of file
+]
diff --git a/src/test/resources/testData/nodes_edges_with_n_r_i_cy_output.cx b/src/test/resources/testData/nodes_edges_with_n_r_i_cy_output.cx
index 113c584..0d12d73 100644
--- a/src/test/resources/testData/nodes_edges_with_n_r_i_cy_output.cx
+++ b/src/test/resources/testData/nodes_edges_with_n_r_i_cy_output.cx
@@ -167,7 +167,7 @@
"y" : 18.783506870269775
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 608,
"view" : 608,
@@ -296,7 +296,7 @@
}
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
"@id" : 590,
"nodes" : [ 603, 602, 601, 600 ],
"edges" : [ 607, 606, 605, 604 ]
@@ -307,7 +307,7 @@
"s" : 590
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 590,
"c" : 608,
"r" : "view",
@@ -328,7 +328,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 0,
- "name" : "hiddenAttributes",
+ "name" : "cyHiddenAttributes",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -352,13 +352,13 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 3,
- "name" : "visualProperties",
+ "name" : "cyVisualProperties",
"properties" : [ ],
"version" : "1.0"
}, {
"consistencyGroup" : 1,
"elementCount" : 1,
- "name" : "subNetworks",
+ "name" : "cySubNetworks",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -376,7 +376,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 2,
- "name" : "networkRelations",
+ "name" : "cyNetworkRelations",
"properties" : [ ],
"version" : "1.0"
} ]
@@ -385,4 +385,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/subnetworks1.cx b/src/test/resources/testData/subnetworks1.cx
index 2459897..62cca9d 100644
--- a/src/test/resources/testData/subnetworks1.cx
+++ b/src/test/resources/testData/subnetworks1.cx
@@ -35,7 +35,7 @@
"t": 7
}]
}, {
- "subNetworks": [{
+ "cySubNetworks": [{
"@id": 1,
"nodes": [1, 2, 3, 4, 5],
"edges": [101]
@@ -53,7 +53,7 @@
"s": 2
}]
}, {
- "networkRelations": [{
+ "cyNetworkRelations": [{
"p": 0,
"c": 1,
"r": "subnetwork",
@@ -74,4 +74,4 @@
"r": "view",
"name": "view 1002"
}]
-}]
\ No newline at end of file
+}]
diff --git a/src/test/resources/testData/subnetworks2.cx b/src/test/resources/testData/subnetworks2.cx
index 009e21d..42adcc7 100644
--- a/src/test/resources/testData/subnetworks2.cx
+++ b/src/test/resources/testData/subnetworks2.cx
@@ -35,7 +35,7 @@
"t": 7
}]
}, {
- "subNetworks": [{
+ "cySubNetworks": [{
"@id": 1,
"nodes": [1, 2, 3, 4],
"edges": [101]
@@ -60,7 +60,7 @@
"s": 3
}]
}, {
- "networkRelations": [{
+ "cyNetworkRelations": [{
"p": 0,
"c": 1,
"r": "subnetwork",
@@ -91,4 +91,4 @@
"r": "view",
"name": "view 1003"
}]
-}]
\ No newline at end of file
+}]
diff --git a/src/test/resources/testData/subnetworks3.cx b/src/test/resources/testData/subnetworks3.cx
index 8429410..a319e99 100644
--- a/src/test/resources/testData/subnetworks3.cx
+++ b/src/test/resources/testData/subnetworks3.cx
@@ -45,7 +45,7 @@
"t": 7
}]
}, {
- "subNetworks": [{
+ "cySubNetworks": [{
"@id": 1,
"nodes": [1, 2, 3, 4],
"edges": [101]
@@ -70,7 +70,7 @@
"s": 3
}]
}, {
- "networkRelations": [{
+ "cyNetworkRelations": [{
"p": 0,
"c": 1,
"r": "subnetwork",
@@ -101,4 +101,4 @@
"r": "view",
"name": "view 1003"
}]
-}]
\ No newline at end of file
+}]
diff --git a/src/test/resources/testData/subnetworks4.cx b/src/test/resources/testData/subnetworks4.cx
index 2187883..b89ef1d 100644
--- a/src/test/resources/testData/subnetworks4.cx
+++ b/src/test/resources/testData/subnetworks4.cx
@@ -61,7 +61,7 @@
"v": "X1- Origin"
}]
}, {
- "subNetworks": [{
+ "cySubNetworks": [{
"@id": 1,
"nodes": [1, 2, 3, 4],
"edges": [101]
@@ -86,7 +86,7 @@
"s": 3
}]
}, {
- "networkRelations": [{
+ "cyNetworkRelations": [{
"p": 0,
"c": 1,
"r": "subnetwork",
@@ -117,4 +117,4 @@
"r": "view",
"name": "view 1003"
}]
-}]
\ No newline at end of file
+}]
diff --git a/src/test/resources/testData/various_mappings_gradients.cx b/src/test/resources/testData/various_mappings_gradients.cx
index d1080bd..d67d18e 100644
--- a/src/test/resources/testData/various_mappings_gradients.cx
+++ b/src/test/resources/testData/various_mappings_gradients.cx
@@ -434,7 +434,7 @@
"y" : 94.0
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 31323,
"view" : 31323,
@@ -623,7 +623,7 @@
}
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
"@id" : 31302,
"nodes" : [ 31317, 31316, 31315, 31314, 31313, 31312 ],
"edges" : [ 31322, 31321, 31320, 31319, 31318 ]
@@ -634,7 +634,7 @@
"s" : 31302
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 31302,
"c" : 31323,
"r" : "view",
@@ -655,7 +655,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 0,
- "name" : "hiddenAttributes",
+ "name" : "cyHiddenAttributes",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -679,13 +679,13 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 9,
- "name" : "visualProperties",
+ "name" : "cyVisualProperties",
"properties" : [ ],
"version" : "1.0"
}, {
"consistencyGroup" : 1,
"elementCount" : 1,
- "name" : "subNetworks",
+ "name" : "cySubNetworks",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -703,7 +703,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 2,
- "name" : "networkRelations",
+ "name" : "cyNetworkRelations",
"properties" : [ ],
"version" : "1.0"
} ]
@@ -712,4 +712,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]
diff --git a/src/test/resources/testData/various_mappings_gradients2.cx b/src/test/resources/testData/various_mappings_gradients2.cx
index c5bef7c..ad6223d 100644
--- a/src/test/resources/testData/various_mappings_gradients2.cx
+++ b/src/test/resources/testData/various_mappings_gradients2.cx
@@ -434,7 +434,7 @@
"y" : 158.0
} ]
}, {
- "visualProperties" : [ {
+ "cyVisualProperties" : [ {
"properties_of" : "network",
"applies_to" : 419,
"view" : 419,
@@ -623,7 +623,7 @@
}
} ]
}, {
- "subNetworks" : [ {
+ "cySubNetworks" : [ {
"@id" : 398,
"nodes" : [ 413, 412, 411, 410, 409, 408 ],
"edges" : [ 418, 417, 416, 415, 414 ]
@@ -634,7 +634,7 @@
"s" : 398
} ]
}, {
- "networkRelations" : [ {
+ "cyNetworkRelations" : [ {
"p" : 398,
"c" : 419,
"r" : "view",
@@ -655,7 +655,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 0,
- "name" : "hiddenAttributes",
+ "name" : "cyHiddenAttributes",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -679,13 +679,13 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 9,
- "name" : "visualProperties",
+ "name" : "cyVisualProperties",
"properties" : [ ],
"version" : "1.0"
}, {
"consistencyGroup" : 1,
"elementCount" : 1,
- "name" : "subNetworks",
+ "name" : "cySubNetworks",
"properties" : [ ],
"version" : "1.0"
}, {
@@ -703,7 +703,7 @@
}, {
"consistencyGroup" : 1,
"elementCount" : 2,
- "name" : "networkRelations",
+ "name" : "cyNetworkRelations",
"properties" : [ ],
"version" : "1.0"
} ]
@@ -712,4 +712,4 @@
"error" : "",
"success" : true
} ]
-} ]
\ No newline at end of file
+} ]