Notebook error

[Jean-Baptiste-Lasselle]

Idk if notebook is not trusted is related to the error about ffi :

Stack trace:
TypeError: Deno.dlopen is not a function
    at dlopen (https://deno.land/x/plug@1.0.0-rc.3/mod.ts:145:15)
    at eventLoopTick (ext:core/01_core.js:153:7)
    at async https://deno.land/x/skia_canvas@0.5.5/src/ffi.ts:966:10

[Jean-Baptiste-Lasselle]

Okay, I investigated the issue and I had to open an issue in the deno repository denoland/deno#22508

[Jean-Baptiste-Lasselle]

todo: add on : ouh oh my, you must pass --allow-env, --allow-ffi and --unstable-ffi flags , i will try using together all 3, i haven't tested that yet, thanks for the ref @sergiunagy !

[Jean-Baptiste-Lasselle]

$ docker-compose exec -T jupyter_deno bash -c 'export PATH="$PATH:$HOME/.cargo/bin" && source ~/.bashrc && deno jupyter --install --help'
Deno kernel for Jupyter notebooks

Usage: deno jupyter [OPTIONS]

Options:
      --install
          Installs kernelspec, requires 'jupyter' command to be available.
      --kernel
          Start the kernel
  -q, --quiet
          Suppress diagnostic output
      --conn <conn>
          Path to JSON file describing connection parameters, provided by Jupyter
  -h, --help
          Print help
      --unstable
          Enable unstable features and APIs
      --unstable-bare-node-builtins
          Enable unstable bare node builtins feature [env: DENO_UNSTABLE_BARE_NODE_BUILTINS=]
      --unstable-byonm
          Enable unstable 'bring your own node_modules' feature [env: DENO_UNSTABLE_BYONM=]
      --unstable-sloppy-imports
          Enable unstable resolving of specifiers by extension probing, .js to .ts, and directory probing. [env: DENO_UNSTABLE_SLOPPY_IMPORTS=]
      --unstable-broadcast-channel
          Enable unstable `BroadcastChannel` API
      --unstable-cron
          Enable unstable Deno.cron API
      --unstable-ffi
          Enable unstable FFI APIs
      --unstable-fs
          Enable unstable file system APIs
      --unstable-http
          Enable unstable HTTP APIs
      --unstable-kv
          Enable unstable Key-Value store APIs
      --unstable-net
          Enable unstable net APIs
      --unstable-temporal
          Enable unstable Temporal API
      --unstable-unsafe-proto
          Enable unsafe __proto__ support. This is a security risk.
      --unstable-webgpu
          Enable unstable `WebGPU` API
      --unstable-worker-options
          Enable unstable Web Worker APIs

[Jean-Baptiste-Lasselle]

docker-compose exec -T jupyter_deno bash -c 'export PATH="$PATH:$HOME/.cargo/bin" && source ~/.bashrc && deno jupyter --install --help'

docker-compose exec -T jupyter_deno bash -c 'export PATH="$PATH:$HOME/.cargo/bin" && source ~/.bashrc && deno jupyter lab --help'

docker-compose exec -T jupyter_deno bash -c 'export PATH="$PATH:$HOME/.cargo/bin" && source ~/.bashrc && jupyter lab --help'

[Jean-Baptiste-Lasselle]

jbl@pokus2:~/poc-data-visualization$ docker-compose exec -T jupyter_deno bash -c 'export PATH="$PATH:$HOME/.cargo/bin" && source ~/.bashrc && jupyter lab --help'
JupyterLab - An extensible computational environment for Jupyter.

This launches a Tornado based HTML Server that serves up an HTML5/Javascript
JupyterLab client.

JupyterLab has three different modes of running:

* Core mode (`--core-mode`): in this mode JupyterLab will run using the JavaScript
  assets contained in the installed `jupyterlab` Python package. In core mode, no
  extensions are enabled. This is the default in a stable JupyterLab release if you
  have no extensions installed.
* Dev mode (`--dev-mode`): uses the unpublished local JavaScript packages in the
  `dev_mode` folder.  In this case JupyterLab will show a red stripe at the top of
  the page.  It can only be used if JupyterLab is installed as `pip install -e .`.
* App mode: JupyterLab allows multiple JupyterLab "applications" to be
  created by the user with different combinations of extensions. The `--app-dir` can
  be used to set a directory for different applications. The default application
  path can be found using `jupyter lab path`.

Subcommands
===========
Subcommands are launched as `lab cmd [args]`. For information on using
subcommand 'cmd', do: `lab cmd -h`.

build
clean
path
paths
workspace
workspaces
licenses

Options
=======
The options below are convenience aliases to configurable class-options,
as listed in the "Equivalent to" description-line of the aliases.
To see all configurable class-options for some <cmd>, use:
    <cmd> --help-all

--debug
    Set debug level for the extension and underlying server applications.
    Equivalent to: [--ServerApp.log_level=DEBUG --ExtensionApp.log_level=DEBUG]
--show-config
    Show the application's configuration (human-readable format)
    Equivalent to: [--Application.show_config=True]
--show-config-json
    Show the application's configuration (json format)
    Equivalent to: [--Application.show_config_json=True]
--generate-config
    generate default config file
    Equivalent to: [--JupyterApp.generate_config=True]
-y
    Answer yes to any questions instead of prompting.
    Equivalent to: [--JupyterApp.answer_yes=True]
--allow-root
    Allow the server to be run from root user.
    Equivalent to: [--ServerApp.allow_root=True]
--no-browser
    Prevent the opening of the default url in the browser.
    Equivalent to: [--ServerApp.open_browser=False --ExtensionApp.open_browser=False]
--autoreload
    Autoreload the webapp
        Enable reloading of the tornado webapp and all imported Python packages
        when any changes are made to any Python src files in server or
        extensions.
    Equivalent to: [--ServerApp.autoreload=True]
--script
    DEPRECATED, IGNORED
    Equivalent to: [--FileContentsManager.save_script=True]
--no-script
    DEPRECATED, IGNORED
    Equivalent to: [--FileContentsManager.save_script=False]
--core-mode
    Start the app in core mode.
    Equivalent to: [--LabApp.core_mode=True]
--dev-mode
    Start the app in dev mode for running from source.
    Equivalent to: [--LabApp.dev_mode=True]
--skip-dev-build
    Skip the initial install and JS build of the app in dev mode.
    Equivalent to: [--LabApp.skip_dev_build=True]
--watch
    Start the app in watch mode.
    Equivalent to: [--LabApp.watch=True]
--splice-source
    Splice source packages into app directory.
    Equivalent to: [--LabApp.splice_source=True]
--expose-app-in-browser
    Expose the global app instance to browser via window.jupyterapp.
    Equivalent to: [--LabApp.expose_app_in_browser=True]
--extensions-in-dev-mode
    Load prebuilt extensions in dev-mode.
    Equivalent to: [--LabApp.extensions_in_dev_mode=True]
--collaborative
    To enable real-time collaboration, you must install the extension `jupyter_collaboration`.
            You can install it using pip for example:

                python -m pip install jupyter_collaboration

            This flag is now deprecated and will be removed in JupyterLab v5.
    Equivalent to: [--LabApp.collaborative=True]
--custom-css
    Load custom CSS in template html files. Default is False
    Equivalent to: [--LabApp.custom_css=True]
--log-level=<Enum>
    Set the log level by value or name.
    Choices: any of [0, 10, 20, 30, 40, 50, 'DEBUG', 'INFO', 'WARN', 'ERROR', 'CRITICAL']
    Default: 30
    Equivalent to: [--Application.log_level]
--config=<Unicode>
    Full path of a config file.
    Default: ''
    Equivalent to: [--JupyterApp.config_file]
--ip=<Unicode>
    The IP address the Jupyter server will listen on.
    Default: 'localhost'
    Equivalent to: [--ServerApp.ip]
--port=<Int>
    The port the server will listen on (env: JUPYTER_PORT).
    Default: 0
    Equivalent to: [--ServerApp.port]
--port-retries=<Int>
    The number of additional ports to try if the specified port is not available
    (env: JUPYTER_PORT_RETRIES).
    Default: 50
    Equivalent to: [--ServerApp.port_retries]
--keyfile=<Unicode>
    The full path to a private key file for usage with SSL/TLS.
    Default: ''
    Equivalent to: [--ServerApp.keyfile]
--certfile=<Unicode>
    The full path to an SSL/TLS certificate file.
    Default: ''
    Equivalent to: [--ServerApp.certfile]
--client-ca=<Unicode>
    The full path to a certificate authority certificate for SSL/TLS client
    authentication.
    Default: ''
    Equivalent to: [--ServerApp.client_ca]
--notebook-dir=<Unicode>
    The directory to use for notebooks and kernels.
    Default: ''
    Equivalent to: [--ServerApp.root_dir]
--browser=<Unicode>
    Specify what command to use to invoke a web
                          browser when starting the server. If not specified, the
                          default browser will be determined by the `webbrowser`
                          standard library module, which allows setting of the
                          BROWSER environment variable to override it.
    Default: ''
    Equivalent to: [--ServerApp.browser]
--pylab=<Unicode>
    DISABLED: use %pylab or %matplotlib in the notebook to enable matplotlib.
    Default: 'disabled'
    Equivalent to: [--ServerApp.pylab]
--watch=<Bool>
    Whether to serve the app in watch mode
    Default: False
    Equivalent to: [--LabApp.watch]
--app-dir=<Unicode>
    The app directory to launch JupyterLab from.
    Default: None
    Equivalent to: [--LabApp.app_dir]

Examples
--------

    jupyter lab                       # start JupyterLab
            jupyter lab --dev-mode            # start JupyterLab in development mode, with no extensions
            jupyter lab --core-mode           # start JupyterLab in core mode, with no extensions
            jupyter lab --app-dir=~/myjupyterlabapp # start JupyterLab with a particular set of extensions
            jupyter lab --certfile=mycert.pem # use SSL/TLS certificate

To see all available configurables, use `--help-all`.

[Jean-Baptiste-Lasselle]

restart all from latest commit on branch:

docker-compose down && git checkout . && git pull && docker-compose build jupyter_deno && docker-compose up -d jupyter_deno && docker-compose logs -f

[Jean-Baptiste-Lasselle]

todo: add on : ouh oh my, you must pass --allow-env, --allow-ffi and --unstable-ffi flags , i will try using together all 3, i haven't tested that yet, thanks for the ref @sergiunagy !

ok but actually what i can test, and that the guy does, is that he does not use jupyter, he runs with deno alone: so that's a good idea to run it with deno alone:

• both in a container, in linux
• and with a bare install of deno on a widnows: i sort of understood that ffi works only on windows in some deep issues i found, but i don't remember the reference...