From ecbf5142f7801cf40adf5cf71293436834b6e3ed Mon Sep 17 00:00:00 2001 From: alameldin Date: Sun, 22 Feb 2015 16:06:18 -0500 Subject: [PATCH 1/3] update the changlog --- ChangeLog | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/ChangeLog b/ChangeLog index 3e5893e15d..5bb2dec71e 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,3 +1,7 @@ +2015-02-21 Hussien Alameldin + + * sandbox/normalize-by-align.py, read_aligner.py, lice-reads-by-coverage.py: "copyright header was added" + 2015-02-21 Hussien Alameldin * sandbox/calc-best-assembly.py, collect-variants.py, graph-size.py: Set executable bits using "chmod +x" From 732ee3c20388dfc1e27b2e3b24136cc7c3b0f92e Mon Sep 17 00:00:00 2001 From: alameldin Date: Sun, 22 Feb 2015 20:22:09 -0500 Subject: [PATCH 2/3] ChangeLog update #797 --- ChangeLog | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/ChangeLog b/ChangeLog index 5bb2dec71e..f7fd4f2560 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,6 +1,6 @@ 2015-02-21 Hussien Alameldin - * sandbox/normalize-by-align.py, read_aligner.py, lice-reads-by-coverage.py: "copyright header was added" + * sandbox/normalize-by-align.py, read_aligner.py, slice-reads-by-coverage.py: "copyright header was added" 2015-02-21 Hussien Alameldin From 2d709af8af6b47d3dcbb0dc15b8f2533e9e95824 Mon Sep 17 00:00:00 2001 From: alameldin Date: Sun, 22 Feb 2015 21:39:37 -0500 Subject: [PATCH 3/3] add copyright header --- ChangeLog | 4 +++- sandbox/normalize-by-align.py | 5 +++++ sandbox/read_aligner.py | 6 ++++++ sandbox/slice-reads-by-coverage.py | 5 +++++ 4 files changed, 19 insertions(+), 1 deletion(-) diff --git a/ChangeLog b/ChangeLog index f7fd4f2560..895e02317a 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,6 +1,8 @@ 2015-02-21 Hussien Alameldin - * sandbox/normalize-by-align.py, read_aligner.py, slice-reads-by-coverage.py: "copyright header was added" + * sandbox/normalize-by-align.py: "copyright header 2013-2015 was added" + * sandbob/read_aligner.py: "copyright header 2013-2015 was added" + * sandbox/slice-reads-by-coverage.py: "copyright header 2014 was added" 2015-02-21 Hussien Alameldin diff --git a/sandbox/normalize-by-align.py b/sandbox/normalize-by-align.py index 9b345de858..293156fdcd 100755 --- a/sandbox/normalize-by-align.py +++ b/sandbox/normalize-by-align.py @@ -1,4 +1,9 @@ #! /usr/bin/env python2 +# This file is part of khmer, http://github.com/ged-lab/khmer/, and is +# Copyright (C) Michigan State University, 2013-2014. It is licensed under +# the three-clause BSD license; see doc/LICENSE.txt. +# Contact: khmer-project@idyll.org + """ XXX diff --git a/sandbox/read_aligner.py b/sandbox/read_aligner.py index feb30846aa..ca8ef896d4 100755 --- a/sandbox/read_aligner.py +++ b/sandbox/read_aligner.py @@ -1,4 +1,10 @@ #! /usr/bin/env python2 + +# This file is part of khmer, http://github.com/ged-lab/khmer/, and is +# Copyright (C) Michigan State University, 2013-2015. It is licensed under +# the three-clause BSD license; see doc/LICENSE.txt. +# Contact: khmer-project@idyll.org + """ Error correct reads based on a counting hash from a diginorm step. Output sequences will be put in @@@. diff --git a/sandbox/slice-reads-by-coverage.py b/sandbox/slice-reads-by-coverage.py index 10398f9095..e1103c4e39 100755 --- a/sandbox/slice-reads-by-coverage.py +++ b/sandbox/slice-reads-by-coverage.py @@ -1,4 +1,9 @@ #! /usr/bin/env python2 +# This file is part of khmer, http://github.com/ged-lab/khmer/, and is +# Copyright (C) Michigan State University, 2014. It is licensed under +# the three-clause BSD license; see doc/LICENSE.txt. +# Contact: khmer-project@idyll.org + import argparse import screed import sys