From efd2c6f360be45fa7f61e7a04503a9a2ec90e8d8 Mon Sep 17 00:00:00 2001 From: Chuck Pepe-Ranney Date: Mon, 30 Jun 2014 13:54:48 -0600 Subject: [PATCH 1/2] added epilog documentation for .dist file produced by extract-partitions.py --- scripts/extract-partitions.py | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/scripts/extract-partitions.py b/scripts/extract-partitions.py index 597d0ae497..23ce60f383 100755 --- a/scripts/extract-partitions.py +++ b/scripts/extract-partitions.py @@ -54,6 +54,11 @@ def get_parser(): merge-partitions.py -k 20 example annotate-partitions.py -k 20 example tests/test-data/random-20-a.fa extract-partitions.py example random-20-a.fa.part + + (extract-partitions.py will produce a partition size distribution + in .dist. The columns are: (1) number of reads, (2) count + of partitions with n reads, (3) cumulative sum of partitions, + (4) cumulative sum of reads.) """ parser = argparse.ArgumentParser( description="Separate sequences that are annotated with partitions " From 18f49fd9aa9d2dff6b6cd580e55a25d32f748769 Mon Sep 17 00:00:00 2001 From: Chuck Pepe-Ranney Date: Mon, 30 Jun 2014 13:58:58 -0600 Subject: [PATCH 2/2] ChangLog entry for extract-partitions.py epilog additions re: .dist documentation --- ChangeLog | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/ChangeLog b/ChangeLog index 6c4a686481..f2845cefdd 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,3 +1,8 @@ +2014-06-20 Chuck Pepe-Ranney + + * scripts/extract-partitions.py: added epilog documentation for + .dist columns. + 2014-06-20 Michael R. Crusoe * doc/release.txt: Add Coverity Scan to release checklist