From eff1b1bb44de6bca3b138f50ff725378fd7ce76b Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Wed, 10 May 2023 16:44:20 -0400 Subject: [PATCH 001/183] BP5: fixes memory error with IBM XL (cherry picked from commit 501278282a04712b490eccc7519e23f71f20a3a7) --- source/adios2/engine/bp5/BP5Writer.cpp | 18 +++++++++++++++--- .../adios2/toolkit/format/bp5/BP5Serializer.h | 4 ---- 2 files changed, 15 insertions(+), 7 deletions(-) diff --git a/source/adios2/engine/bp5/BP5Writer.cpp b/source/adios2/engine/bp5/BP5Writer.cpp index 7c5af59723..6888573ca2 100644 --- a/source/adios2/engine/bp5/BP5Writer.cpp +++ b/source/adios2/engine/bp5/BP5Writer.cpp @@ -547,12 +547,14 @@ void BP5Writer::EndStep() m_Profiler.Start("AWD"); // TSInfo destructor would delete the DataBuffer so we need to save it // for async IO and let the writer free it up when not needed anymore - adios2::format::BufferV *databuf = TSInfo.DataBuffer; - TSInfo.DataBuffer = NULL; m_AsyncWriteLock.lock(); m_flagRush = false; m_AsyncWriteLock.unlock(); - WriteData(databuf); + + // WriteData will free TSInfo.DataBuffer + WriteData(TSInfo.DataBuffer); + TSInfo.DataBuffer = NULL; + m_Profiler.Stop("AWD"); /* @@ -688,6 +690,16 @@ void BP5Writer::EndStep() m_EndStepEnd = Now(); /* Seconds ts2 = Now() - m_EngineStart; std::cout << "END STEP ended at: " << ts2.count() << std::endl;*/ + + if (TSInfo.AttributeEncodeBuffer) + { + delete TSInfo.AttributeEncodeBuffer; + } + + if (TSInfo.MetaEncodeBuffer) + { + delete TSInfo.MetaEncodeBuffer; + } } // PRIVATE diff --git a/source/adios2/toolkit/format/bp5/BP5Serializer.h b/source/adios2/toolkit/format/bp5/BP5Serializer.h index 5ceeb54dad..71ec480e88 100644 --- a/source/adios2/toolkit/format/bp5/BP5Serializer.h +++ b/source/adios2/toolkit/format/bp5/BP5Serializer.h @@ -42,10 +42,6 @@ class BP5Serializer : virtual public BP5Base ~TimestepInfo() { - delete MetaEncodeBuffer; - if (AttributeEncodeBuffer) - delete AttributeEncodeBuffer; - delete DataBuffer; } }; From 457d8e292e4f2ba2cb7d31ac3796f541279b0753 Mon Sep 17 00:00:00 2001 From: Vicente Bolea Date: Wed, 17 May 2023 12:55:00 -0400 Subject: [PATCH 002/183] Merge pull request #3623 from vicentebolea/kokkos-use-nvcc-wrapper ci: use nvcc_wrapper in adiosKokkos (cherry picked from commit 189f3842cdafd20235821c33eb911b70b877e9a0) --- CODEOWNERS | 20 +++++++++---- cmake/DetectOptions.cmake | 4 +-- source/adios2/CMakeLists.txt | 28 +++++-------------- source/adios2/helper/adiosGPUFunctions.h | 2 +- source/adios2/helper/kokkos/CMakeLists.txt | 25 +++++++++++++++++ .../helper/{ => kokkos}/adiosKokkos.cpp | 0 .../adios2/helper/{ => kokkos}/adiosKokkos.h | 0 7 files changed, 49 insertions(+), 30 deletions(-) create mode 100644 source/adios2/helper/kokkos/CMakeLists.txt rename source/adios2/helper/{ => kokkos}/adiosKokkos.cpp (100%) rename source/adios2/helper/{ => kokkos}/adiosKokkos.h (100%) diff --git a/CODEOWNERS b/CODEOWNERS index ef9d75102a..2d2c4cd680 100644 --- a/CODEOWNERS +++ b/CODEOWNERS @@ -1,17 +1,25 @@ # KW's stuff -**/CMakeLists.txt @vicentebolea @caitlinross -*.cmake @vicentebolea @caitlinross +CMakeLists.txt @vicentebolea @caitlinross + +# Caitlin's stuff +plugins/ @caitlinross # Vicente's stuff -*.sh @vicentebolea *.bash @vicentebolea -*.in @vicentebolea -*.yml @vicentebolea -*.yaml @vicentebolea +*.cmake @vicentebolea *.in @vicentebolea *.json @vicentebolea +*.sh @vicentebolea *.txt @vicentebolea +*.yaml @vicentebolea +*.yml @vicentebolea +cmake/ @vicentebolea scripts/ @vicentebolea .github/ @vicentebolea .circleci/ @vicentebolea source/adios2/toolkit/sst/dp/mpi_dp.c @vicentebolea + +# GPU-aware specific files +source/adios2/helper/kokkos/ @anagainaru +source/adios2/helper/adiosCUDA.* @anagainaru +source/adios2/helper/adiosGPUFunctions.h @anagainaru diff --git a/cmake/DetectOptions.cmake b/cmake/DetectOptions.cmake index 9876538043..871ad0c42f 100644 --- a/cmake/DetectOptions.cmake +++ b/cmake/DetectOptions.cmake @@ -177,9 +177,9 @@ endif() # Kokkos if(ADIOS2_USE_Kokkos) if(ADIOS2_USE_Kokkos STREQUAL AUTO) - find_package(Kokkos 3.7...<4.0 QUIET) + find_package(Kokkos 3.7 QUIET) else() - find_package(Kokkos 3.7...<4.0 REQUIRED) + find_package(Kokkos 3.7 REQUIRED) endif() if(Kokkos_FOUND) set(ADIOS2_HAVE_Kokkos TRUE) diff --git a/source/adios2/CMakeLists.txt b/source/adios2/CMakeLists.txt index 77899e8ecc..f7f6643bf7 100644 --- a/source/adios2/CMakeLists.txt +++ b/source/adios2/CMakeLists.txt @@ -126,28 +126,14 @@ endif() set(maybe_adios2_core_kokkos) if(ADIOS2_HAVE_Kokkos) - add_library(adios2_core_kokkos helper/adiosKokkos.h helper/adiosKokkos.cpp) - - set_target_properties(adios2_core_kokkos PROPERTIES - VISIBILITY_INLINES_HIDDEN ON - INCLUDE_DIRECTORIES "$;$" - EXPORT_NAME core_kokkos - OUTPUT_NAME adios2${ADIOS2_LIBRARY_SUFFIX}_core_kokkos - ) - - kokkos_compilation(SOURCE helper/adiosKokkos.cpp) - if(Kokkos_ENABLE_CUDA) - set_property(SOURCE helper/adiosKokkos.cpp PROPERTY LANGUAGE CUDA) - set_property(SOURCE helper/adiosKokkos.cpp APPEND PROPERTY COMPILE_FLAGS "--extended-lambda") - set_target_properties(adios2_core_kokkos PROPERTIES - CUDA_VISIBILITY_PRESET hidden - ) - target_compile_features(adios2_core_kokkos PRIVATE cuda_std_17) - endif() - - target_link_libraries(adios2_core_kokkos PRIVATE Kokkos::kokkos) + # Kokkos imposes us to set our CMAKE_CXX_COMPILER to Kokkos_CXX_COMPILER. + # The problem is that we do not want this for the whole project and with + # CMake we cannot set the CXX_COMPILER for a single target. The solution is + # to move the adios2 module that uses Kokkos to its independent subdir and + # set there CMAKE_CXX_COMPILER, which is possible (and scoped to that subdir) + # in cmake. + add_subdirectory(helper/kokkos) target_link_libraries(adios2_core PRIVATE adios2_core_kokkos) - set(maybe_adios2_core_kokkos adios2_core_kokkos) endif() diff --git a/source/adios2/helper/adiosGPUFunctions.h b/source/adios2/helper/adiosGPUFunctions.h index 8069a41b1e..78a2f323a8 100644 --- a/source/adios2/helper/adiosGPUFunctions.h +++ b/source/adios2/helper/adiosGPUFunctions.h @@ -6,7 +6,7 @@ #endif #ifdef ADIOS2_HAVE_KOKKOS -#include "adios2/helper/adiosKokkos.h" +#include "adios2/helper/kokkos/adiosKokkos.h" #endif #endif /* ADIOS2_HELPER_ADIOSGPUFUNCTIONS_H_ */ diff --git a/source/adios2/helper/kokkos/CMakeLists.txt b/source/adios2/helper/kokkos/CMakeLists.txt new file mode 100644 index 0000000000..c37a3c9417 --- /dev/null +++ b/source/adios2/helper/kokkos/CMakeLists.txt @@ -0,0 +1,25 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +if (NOT DEFINED Kokkos_CXX_COMPILER) + message(FATAL_ERROR "ADIOS: Kokkos module requires the Kokkos_CXX_COMPILER variable") +endif() + +# CXX Compiler settings only in for this subdir +set(CMAKE_CXX_STANDARD 17) +set(CMAKE_CXX_STANDARD_REQUIRED ON) +set(CMAKE_CXX_COMPILER "${Kokkos_CXX_COMPILER}") + +add_library(adios2_core_kokkos adiosKokkos.h adiosKokkos.cpp) + +set_target_properties(adios2_core_kokkos PROPERTIES + VISIBILITY_INLINES_HIDDEN ON + INCLUDE_DIRECTORIES "$;$" + EXPORT_NAME core_kokkos + OUTPUT_NAME adios2${ADIOS2_LIBRARY_SUFFIX}_core_kokkos + ) + +kokkos_compilation(SOURCE adiosKokkos.cpp) +target_link_libraries(adios2_core_kokkos PRIVATE Kokkos::kokkos) diff --git a/source/adios2/helper/adiosKokkos.cpp b/source/adios2/helper/kokkos/adiosKokkos.cpp similarity index 100% rename from source/adios2/helper/adiosKokkos.cpp rename to source/adios2/helper/kokkos/adiosKokkos.cpp diff --git a/source/adios2/helper/adiosKokkos.h b/source/adios2/helper/kokkos/adiosKokkos.h similarity index 100% rename from source/adios2/helper/adiosKokkos.h rename to source/adios2/helper/kokkos/adiosKokkos.h From 72e430ce6eb5c5cd3cc2fb2916097429114496ca Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Fri, 5 May 2023 17:10:02 -0400 Subject: [PATCH 003/183] ci,ascent: enable ascent builds (cherry picked from commit cf7a879f54290a019228e2397e72a8e5e3d05fe1) --- .gitlab/gitlab-ci-ascent.yml | 130 ++++++++++++++++++ .gitlab/gitlab-ci-gitlabdotcom.yml | 6 - .gitlab/gitlab-ci-olcf.yml | 28 ---- .gitlab/kokkos.sh | 30 ++++ CTestCustom.cmake.in | 2 + scripts/ci/cmake-v2/ci-ascent-cuda.cmake | 27 ++++ .../ci/cmake-v2/ci-ascent-kokkos-cuda.cmake | 32 +++++ scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake | 30 ++++ .../ci/{cmake => cmake-v2}/ci-ascent-xl.cmake | 30 ++-- scripts/ci/cmake/ci-ascent-gcc.cmake | 38 ----- scripts/ci/gitlab-ci/run.sh | 73 +++++----- 11 files changed, 304 insertions(+), 122 deletions(-) create mode 100644 .gitlab/gitlab-ci-ascent.yml delete mode 100644 .gitlab/gitlab-ci-gitlabdotcom.yml delete mode 100644 .gitlab/gitlab-ci-olcf.yml create mode 100755 .gitlab/kokkos.sh create mode 100644 scripts/ci/cmake-v2/ci-ascent-cuda.cmake create mode 100644 scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake create mode 100644 scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake rename scripts/ci/{cmake => cmake-v2}/ci-ascent-xl.cmake (53%) delete mode 100644 scripts/ci/cmake/ci-ascent-gcc.cmake diff --git a/.gitlab/gitlab-ci-ascent.yml b/.gitlab/gitlab-ci-ascent.yml new file mode 100644 index 0000000000..1d1e5c0a95 --- /dev/null +++ b/.gitlab/gitlab-ci-ascent.yml @@ -0,0 +1,130 @@ +# Ad-hoc build that runs in the ECP Hardware, concretely in OLCF Ascent. +.setup_env_ecpci: &setup_env_ecpci | + module purge + module load ${JOB_MODULES} + module list + export PATH="/gpfs/wolf/csc303/scratch/vbolea/ci/utils:$PATH" + +.ascent-common: + except: + - schedules + tags: + - batch + interruptible: true + variables: + CCACHE_BASEDIR: "/gpfs/wolf/" + CCACHE_DIR: "/gpfs/wolf/csc303/scratch/vbolea/ci/ccache" + # -isystem= is not affected by CCACHE_BASEDIR, thus we must ignore it + CCACHE_IGNOREOPTIONS: "-isystem=*" + CCACHE_NOHASHDIR: "true" + + CUDAHOSTCXX: "g++" + CUSTOM_CI_BUILDS_DIR: "/gpfs/wolf/csc303/scratch/vbolea/ci/adios2" + GITLAB_SITE: "OLCF Ascent" + SCHEDULER_PARAMETERS: -P CSC303 -W 1:00 -nnodes 1 -alloc_flags gpudefault + before_script: + - *setup_env_ecpci + - ccache -z + script: + - bash scripts/ci/gitlab-ci/run.sh update + - bash scripts/ci/gitlab-ci/run.sh configure + - jsrun -n1 -a1 -g1 -c40 -bpacked:40 bash scripts/ci/gitlab-ci/run.sh build + - jsrun -n1 -a1 -g1 -c2 bash scripts/ci/gitlab-ci/run.sh test + after_script: + - *setup_env_ecpci + - bash scripts/ci/gitlab-ci/run.sh submit + - ccache -s + +ascent-cuda: + variables: + # Order matters + JOB_MODULES: >- + DefApps + zstd + cuda/11.4.2 + git + gcc/10.2.0 + ninja + spectrum-mpi + lsf-tools + libffi + hdf5 + cmake + extends: + - .ascent-common + +ascent-kokkos-cuda: + variables: + # Order matters + JOB_MODULES: >- + DefApps + zstd + cuda/11.4.2 + git + gcc/10.2.0 + ninja + spectrum-mpi + lsf-tools + libffi + hdf5 + cmake + KOKKOS_OPTS: >- + -DKokkos_ARCH_POWER9=ON + -DKokkos_ARCH_VOLTA70=ON + -DKokkos_ENABLE_CUDA=ON + -DKokkos_ENABLE_CUDA_LAMBDA=ON + -DCMAKE_INSTALL_PREFIX:PATH=$CI_BUILDS_DIR/kokkos_install + + Kokkos_DIR: $CI_BUILDS_DIR/kokkos_install + before_script: + - *setup_env_ecpci + - ccache -z + - .gitlab/kokkos.sh "$CI_BUILDS_DIR" "3.7.01" $KOKKOS_OPTS + extends: + - .ascent-common + +ascent-nvhpc: + variables: + # Order matters + JOB_MODULES: >- + DefApps + zstd + nvhpc + git + spectrum-mpi + lsf-tools + libffi + hdf5 + cmake + extends: + - .ascent-common + +ascent-xl: + variables: + # Order matters + JOB_MODULES: >- + DefApps + zstd + cuda/11.4.2 + git + xl + ninja + spectrum-mpi + lsf-tools + libffi + hdf5 + cmake + extends: + - .ascent-common + +sync-github-prs: + tags: + - nobatch + only: + - schedules + variables: + GIT_STRATEGY: none + CUSTOM_CI_BUILDS_DIR: "/gpfs/wolf/csc303/scratch/vbolea/ci/adios2" + script: + - export PATH="/gpfs/wolf/csc303/scratch/vbolea/ci/utils:$PATH" + - SpackCIBridge.py ornladios/ADIOS2 git@code.ornl.gov:ecpcitest/adios2.git https://code.ornl.gov/ ecpcitest/adios2 --prereq-check=format --prereq-check=git_checks diff --git a/.gitlab/gitlab-ci-gitlabdotcom.yml b/.gitlab/gitlab-ci-gitlabdotcom.yml deleted file mode 100644 index eba4958546..0000000000 --- a/.gitlab/gitlab-ci-gitlabdotcom.yml +++ /dev/null @@ -1,6 +0,0 @@ -sync-github-prs: - tags: linux - only: - - schedules - script: - - scripts/ci/scripts/github-prs-to-gitlab.sh ornladios/adios2 code.ornl.gov ecpcitest/adios2 diff --git a/.gitlab/gitlab-ci-olcf.yml b/.gitlab/gitlab-ci-olcf.yml deleted file mode 100644 index ac593185a1..0000000000 --- a/.gitlab/gitlab-ci-olcf.yml +++ /dev/null @@ -1,28 +0,0 @@ -.all-steps: - except: - - schedules - variables: - GITLAB_SITE: "OLCF GitLab" - CMAKE_ENV_MODULE: "cmake" - script: - - bash scripts/ci/gitlab-ci/run.sh update - - bash scripts/ci/gitlab-ci/run.sh configure - - bash scripts/ci/gitlab-ci/run.sh build - - bash scripts/ci/gitlab-ci/run.sh test - -ascent-xl: - extends: - - .all-steps - tags: [nobatch] - -ascent-gcc: - extends: - - .all-steps - tags: [nobatch] - -#ascent-xl-smpi: -# extends: -# - .all-steps -# tags: [batch] -# variables: -# SCHEDULER_PARAMETERS: "-P CSC303 -W 1:00 -nnodes 1" diff --git a/.gitlab/kokkos.sh b/.gitlab/kokkos.sh new file mode 100755 index 0000000000..698fe84ac7 --- /dev/null +++ b/.gitlab/kokkos.sh @@ -0,0 +1,30 @@ +#!/usr/bin/env bash +set -x + +WORKDIR="$1" +VERSION="$2" + +shift 2 + +if [ ! -d "$WORKDIR" ] || [ -z "$VERSION" ] +then + echo "[E] missing args: Invoke as .gitlab/ci/config/kokkos.sh [extra_args]" + exit 1 +fi + +# Build and install Kokkos +curl -L "https://github.com/kokkos/kokkos/archive/refs/tags/$VERSION.tar.gz" \ + | tar -C "$WORKDIR" -xzf - + +cmake -S "$WORKDIR/kokkos-$VERSION" -B "$WORKDIR/kokkos_build" \ + "-DBUILD_SHARED_LIBS=ON" \ + "-DCMAKE_BUILD_TYPE:STRING=release" \ + "-DCMAKE_CXX_COMPILER_LAUNCHER=ccache" \ + "-DCMAKE_CXX_STANDARD:STRING=17" \ + "-DCMAKE_CXX_EXTENSIONS:BOOL=OFF" \ + "-DCMAKE_POSITION_INDEPENDENT_CODE:BOOL=ON" \ + "-DCMAKE_CXX_COMPILER:STRING=$WORKDIR/kokkos-$VERSION/bin/nvcc_wrapper" \ + $* + +cmake --build "$WORKDIR/kokkos_build" +cmake --install "$WORKDIR/kokkos_build" diff --git a/CTestCustom.cmake.in b/CTestCustom.cmake.in index 5dcb601175..834a6a202e 100644 --- a/CTestCustom.cmake.in +++ b/CTestCustom.cmake.in @@ -22,6 +22,8 @@ list(APPEND CTEST_CUSTOM_WARNING_EXCEPTION "warning: template parameter ... is not used in declaring the parameter types of function template" "warning: command-line option '.*' is valid for Fortran but not for C" "Warning #20208-D: '.*' is treated as '.*' in device code" + "Warning: '.*' is treated as '.*' in device code" + ".*was specified as both a system and non-system include directory.*" ) list(APPEND CTEST_CUSTOM_COVERAGE_EXCLUDE ".*/thirdparty/.*" diff --git a/scripts/ci/cmake-v2/ci-ascent-cuda.cmake b/scripts/ci/cmake-v2/ci-ascent-cuda.cmake new file mode 100644 index 0000000000..93febd6614 --- /dev/null +++ b/scripts/ci/cmake-v2/ci-ascent-cuda.cmake @@ -0,0 +1,27 @@ +# Client maintainer: vicente.bolea@kitware.com + +set(dashboard_cache " +ADIOS2_USE_BZip2:BOOL=OFF +ADIOS2_USE_CUDA:BOOL=ON +ADIOS2_USE_DataMan:BOOL=ON +ADIOS2_USE_Fortran:BOOL=ON +ADIOS2_USE_MPI:BOOL=OFF +ADIOS2_USE_PNG:BOOL=OFF +ADIOS2_USE_Python:BOOL=OFF +ADIOS2_USE_SST:BOOL=ON + +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache +CMAKE_CUDA_COMPILER_LAUNCHER=ccache +CMAKE_DISABLE_FIND_PACKAGE_BISON=ON +CMAKE_DISABLE_FIND_PACKAGE_FLEX=ON +CMAKE_Fortran_FLAGS:STRING=-Wall +") + +set(CTEST_TEST_ARGS + PARALLEL_LEVEL 8 + EXCLUDE ".*/BPWRCUDA.ADIOS2BPCUDAWrong/.*BP4.Serial|.*/BPWRCUDA.ADIOS2BPCUDAMemSel/.*BP4.Serial" + ) +set(CTEST_CMAKE_GENERATOR "Ninja") +list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake b/scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake new file mode 100644 index 0000000000..b906bed2e6 --- /dev/null +++ b/scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake @@ -0,0 +1,32 @@ +# Client maintainer: vicente.bolea@kitware.com + +set(kokkos_install_path $ENV{Kokkos_DIR}) + +set(ENV{CC} gcc) +set(ENV{CXX} g++) +set(ENV{FC} gfortran) + +set(dashboard_cache " +ADIOS2_USE_BZip2:BOOL=OFF +ADIOS2_USE_DataMan:BOOL=ON +ADIOS2_USE_Fortran:BOOL=OFF +ADIOS2_USE_MPI:BOOL=OFF +ADIOS2_USE_PNG:BOOL=OFF +ADIOS2_USE_Python:BOOL=OFF +ADIOS2_USE_SST:BOOL=ON +ADIOS2_USE_Kokkos=ON + +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache +CMAKE_CUDA_COMPILER_LAUNCHER=ccache +CMAKE_DISABLE_FIND_PACKAGE_BISON=ON +CMAKE_DISABLE_FIND_PACKAGE_FLEX=ON +") + +set(CTEST_TEST_ARGS + PARALLEL_LEVEL 8 + EXCLUDE ".*/BPWRCUDA.ADIOS2BPCUDAWrong/.*BP4.Serial|.*/BPWRCUDA.ADIOS2BPCUDAMemSel/.*BP4.Serial|Engine.Staging.TestThreads.*" + ) +set(CTEST_CMAKE_GENERATOR "Ninja") +list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake b/scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake new file mode 100644 index 0000000000..c6aa75d3b9 --- /dev/null +++ b/scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake @@ -0,0 +1,30 @@ +# Client maintainer: vicente.bolea@kitware.com + +set(ENV{CC} nvc) +set(ENV{CXX} nvc++) +set(ENV{FC} nvfortran) + +set(dashboard_cache " +ADIOS2_USE_BZip2:BOOL=OFF +ADIOS2_USE_CUDA:BOOL=ON +ADIOS2_USE_DataMan:BOOL=ON +ADIOS2_USE_Fortran:BOOL=ON +ADIOS2_USE_MPI:BOOL=OFF +ADIOS2_USE_PNG:BOOL=OFF +ADIOS2_USE_Python:BOOL=OFF +ADIOS2_USE_SST:BOOL=ON + +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache +CMAKE_DISABLE_FIND_PACKAGE_BISON=ON +CMAKE_DISABLE_FIND_PACKAGE_FLEX=ON +CMAKE_NINJA_FORCE_RESPONSE_FILE=OFF +") + +set(CTEST_TEST_ARGS + PARALLEL_LEVEL 8 + EXCLUDE ".*/BPWRCUDA.ADIOS2BPCUDAWrong/.*BP4.Serial|.*/BPWRCUDA.ADIOS2BPCUDAMemSel/.*BP4.Serial|Install.*Fortran" + ) +set(CTEST_CMAKE_GENERATOR "Unix Makefiles") +list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-ascent-xl.cmake b/scripts/ci/cmake-v2/ci-ascent-xl.cmake similarity index 53% rename from scripts/ci/cmake/ci-ascent-xl.cmake rename to scripts/ci/cmake-v2/ci-ascent-xl.cmake index fec3729755..9f73bab0de 100644 --- a/scripts/ci/cmake/ci-ascent-xl.cmake +++ b/scripts/ci/cmake-v2/ci-ascent-xl.cmake @@ -1,15 +1,4 @@ -# Client maintainer: chuck.atkins@kitware.com - -find_package(EnvModules REQUIRED) - -env_module(purge) -env_module(load git) -env_module(load xl) -env_module(load hdf5) -env_module(load libfabric) -env_module(load python/3.7.0) -env_module(load zfp) -env_module(load zeromq) +# Client maintainer: vicente.bolea@kitware.com set(ENV{CC} xlc) set(ENV{CXX} xlc++) @@ -17,20 +6,25 @@ set(ENV{FC} xlf) set(dashboard_cache " ADIOS2_USE_BZip2:BOOL=OFF -ADIOS2_USE_Blosc:BOOL=OFF ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=ON +ADIOS2_USE_Fortran:BOOL=OFF ADIOS2_USE_MPI:BOOL=OFF +ADIOS2_USE_PNG:BOOL=OFF ADIOS2_USE_Python:BOOL=OFF ADIOS2_USE_SST:BOOL=ON -ADIOS2_USE_SZ:BOOL=OFF -ADIOS2_USE_ZeroMQ:STRING=ON +ADIOS2_USE_ZeroMQ:STRING=OFF ADIOS2_USE_ZFP:BOOL=OFF +ADIOS2_USE_SZ:BOOL=OFF +ADIOS2_USE_Blosc:BOOL=OFF + +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache +CMAKE_DISABLE_FIND_PACKAGE_BISON=ON +CMAKE_DISABLE_FIND_PACKAGE_FLEX=ON ") set(NCPUS 4) set(CTEST_TEST_ARGS PARALLEL_LEVEL 8) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") +set(CTEST_CMAKE_GENERATOR "Ninja") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-ascent-gcc.cmake b/scripts/ci/cmake/ci-ascent-gcc.cmake deleted file mode 100644 index ebf1fd0743..0000000000 --- a/scripts/ci/cmake/ci-ascent-gcc.cmake +++ /dev/null @@ -1,38 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -find_package(EnvModules REQUIRED) - -env_module(purge) -env_module(load git) -env_module(load gcc/8.1.1) -env_module(load hdf5) -env_module(load libfabric) -env_module(load python/3.7.0) -env_module(load zfp) -env_module(load zeromq) - -set(ENV{CC} gcc) -set(ENV{CXX} g++) -set(ENV{FC} gfortran) - -set(dashboard_cache " -ADIOS2_USE_BZip2:BOOL=OFF -ADIOS2_USE_Blosc:BOOL=OFF -ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=ON -ADIOS2_USE_MPI:BOOL=OFF -ADIOS2_USE_Python:BOOL=OFF -ADIOS2_USE_SST:BOOL=ON -ADIOS2_USE_SZ:BOOL=OFF -ADIOS2_USE_ZeroMQ:STRING=ON -ADIOS2_USE_ZFP:BOOL=OFF - -CMAKE_Fortran_FLAGS:STRING=-Wall -") - -set(NCPUS 4) -set(CTEST_TEST_ARGS PARALLEL_LEVEL 8) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/gitlab-ci/run.sh b/scripts/ci/gitlab-ci/run.sh index 05ccc39c9a..02ee8c630f 100755 --- a/scripts/ci/gitlab-ci/run.sh +++ b/scripts/ci/gitlab-ci/run.sh @@ -1,48 +1,57 @@ #!/bin/bash --login - -if [ -n "${GITLAB_SITE}" ] -then - export CI_SITE_NAME="${GITLAB_SITE}" -else - export CI_SITE_NAME="GitLab CI" -fi +set -e export CI_BUILD_NAME="${CI_COMMIT_BRANCH#github/}_${CI_JOB_NAME}" -export CI_SOURCE_DIR="${CI_PROJECT_DIR}" -export CI_ROOT_DIR="${CI_PROJECT_DIR}/.." -export CI_BIN_DIR="${CI_ROOT_DIR}/${CI_BUILD_NAME}" export CI_COMMIT_REF=${CI_COMMIT_SHA} +export CI_ROOT_DIR="${CI_PROJECT_DIR}/.." +export CI_SITE_NAME="${GITLAB_SITE}" +export CI_SOURCE_DIR="${CI_PROJECT_DIR}" -STEP=$1 -CTEST_SCRIPT=scripts/ci/cmake/ci-${CI_JOB_NAME}.cmake - -# Update and Test steps enable an extra step -CTEST_STEP_ARGS="" -case ${STEP} in - test) CTEST_STEP_ARGS="${CTEST_STEP_ARGS} -Ddashboard_do_end=ON" ;; -esac -CTEST_STEP_ARGS="${CTEST_STEP_ARGS} -Ddashboard_do_${STEP}=ON" +export CI_BIN_DIR="${CI_ROOT_DIR}/${CI_BUILD_NAME}" -if [ -n "${CMAKE_ENV_MODULE}" ] +readonly CTEST_SCRIPT=scripts/ci/cmake-v2/ci-${CI_JOB_NAME}.cmake +if [ ! -f "$CTEST_SCRIPT" ] then - module load ${CMAKE_ENV_MODULE} + echo "[E] Variable files does not exits: $CTEST_SCRIPT" + exit 1 +fi - echo "**********module avail Begin************" - module avail - echo "**********module avail End**************" +readonly STEP=$1 +if [ -z "$STEP" ] +then + echo "[E] No argument given: $*" + exit 2 fi -CTEST=ctest +# In OLCF Gitlab our PRs branches tip commit is not the head commit of the PR, +# it is instead the so called merged_commit_sha as described in the GitHub Rest +# API for pull requests. We need to report to the CDASH the original commit +# thus, we set it here using the CTEST_UPDATE_VERSION_OVERRIDE CMake variable +if [[ ${CI_COMMIT_BRANCH} =~ ^pr[0-9]+_.*$ ]] +then + # Original commit it is always its 2nd parent + original_sha=$(git rev-parse "${CI_COMMIT_REF}^2") + readonly UPDATE_ARGS="-DCTEST_UPDATE_VERSION_OVERRIDE=${original_sha}" +fi -echo "**********Env Begin**********" -env | sort -echo "**********Env End************" +declare -a CTEST_STEP_ARGS=("-Ddashboard_full=OFF") +case ${STEP} in + update) CTEST_STEP_ARGS+=("${UPDATE_ARGS}") ;; + build) CTEST_STEP_ARGS+=("-Ddashboard_do_submit=OFF") ;; + test) CTEST_STEP_ARGS+=("-Ddashboard_do_submit=OFF") ;; + submit) CTEST_STEP_ARGS+=("-Ddashboard_do_submit_only=ON" "-Ddashboard_do_build=ON" "-Ddashboard_do_test=ON") ;; +esac +CTEST_STEP_ARGS+=("-Ddashboard_do_${STEP}=ON") echo "**********CTest Begin**********" -${CTEST} --version -echo ${CTEST} -VV -S ${CTEST_SCRIPT} -Ddashboard_full=OFF ${CTEST_STEP_ARGS} -${CTEST} -VV -S ${CTEST_SCRIPT} -Ddashboard_full=OFF ${CTEST_STEP_ARGS} +echo "ctest -VV -S ${CTEST_SCRIPT} ${CTEST_STEP_ARGS[*]}" +ctest -VV -S "${CTEST_SCRIPT}" "${CTEST_STEP_ARGS[@]}" RET=$? echo "**********CTest End************" -exit ${RET} +# EC: 0-127 this script errors, 128-INF ctest errors +if [ $RET -ne 0 ] +then + (( RET += 127 )) +fi +exit $RET From 6bbf4333e2daa54c35588f2aa792d8f6399034cf Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Fri, 12 May 2023 12:45:24 -0400 Subject: [PATCH 004/183] ci,olcf,crusher: enable Crusher CI (cherry picked from commit e09518946caa1b94deeba6f9543f982302ab8f4a) --- .gitlab/config/SpackCIBridge.py | 692 ++++++++++++++++++ .gitlab/config/ccache.cmake | 61 ++ .gitlab/config/dynamic_pipeline.yml.in | 9 + .gitlab/config/generate_pipelines.py | 90 +++ .gitlab/{ => config}/kokkos.sh | 1 - .gitlab/gitlab-ci-ascent.yml | 15 +- .gitlab/gitlab-ci-crusher.yml | 223 ++++++ flake8.cfg | 2 +- scripts/ci/cmake-v2/ci-crusher-cray.cmake | 32 + .../ci/cmake-v2/ci-crusher-kokkos-hip.cmake | 31 + scripts/ci/gitlab-ci/run.sh | 29 +- scripts/ci/gitlab-ci/setup-vars.sh | 41 ++ 12 files changed, 1197 insertions(+), 29 deletions(-) create mode 100755 .gitlab/config/SpackCIBridge.py create mode 100644 .gitlab/config/ccache.cmake create mode 100644 .gitlab/config/dynamic_pipeline.yml.in create mode 100755 .gitlab/config/generate_pipelines.py rename .gitlab/{ => config}/kokkos.sh (90%) create mode 100644 .gitlab/gitlab-ci-crusher.yml create mode 100644 scripts/ci/cmake-v2/ci-crusher-cray.cmake create mode 100644 scripts/ci/cmake-v2/ci-crusher-kokkos-hip.cmake create mode 100755 scripts/ci/gitlab-ci/setup-vars.sh diff --git a/.gitlab/config/SpackCIBridge.py b/.gitlab/config/SpackCIBridge.py new file mode 100755 index 0000000000..72c189e480 --- /dev/null +++ b/.gitlab/config/SpackCIBridge.py @@ -0,0 +1,692 @@ +#!/usr/bin/env python3 + +import argparse +import atexit +import base64 +from datetime import datetime, timedelta, timezone +import dateutil.parser +from github import Github +import json +import os +import re +import subprocess +import sys +import tempfile +import urllib.parse +import urllib.request + + +class SpackCIBridge(object): + + def __init__(self, gitlab_repo="", gitlab_host="", gitlab_project="", github_project="", + disable_status_post=True, sync_draft_prs=False, + main_branch=None, prereq_checks=[]): + self.gitlab_repo = gitlab_repo + self.github_project = github_project + github_token = os.environ.get('GITHUB_TOKEN') + self.github_repo = "https://{0}@github.com/{1}.git".format(github_token, self.github_project) + self.py_github = Github(github_token) + self.py_gh_repo = self.py_github.get_repo(self.github_project, lazy=True) + + self.merge_msg_regex = re.compile(r"Merge\s+([^\s]+)\s+into\s+([^\s]+)") + self.unmergeable_shas = [] + + self.post_status = not disable_status_post + self.sync_draft_prs = sync_draft_prs + self.main_branch = main_branch + self.currently_running_sha = None + self.latest_tested_main_commit = None + + self.prereq_checks = prereq_checks + + dt = datetime.now(timezone.utc) + timedelta(minutes=-60) + self.time_threshold_brief = urllib.parse.quote_plus(dt.isoformat(timespec="seconds")) + + self.pipeline_api_template = gitlab_host + self.pipeline_api_template += "/api/v4/projects/" + self.pipeline_api_template += urllib.parse.quote_plus(gitlab_project) + self.pipeline_api_template += "/pipelines?ref={0}" + + self.commit_api_template = gitlab_host + self.commit_api_template += "/api/v4/projects/" + self.commit_api_template += urllib.parse.quote_plus(gitlab_project) + self.commit_api_template += "/repository/commits/{0}" + + self.cached_commits = {} + + @atexit.register + def cleanup(): + """Shutdown ssh-agent upon program termination.""" + if "SSH_AGENT_PID" in os.environ: + print(" Shutting down ssh-agent({0})".format(os.environ["SSH_AGENT_PID"])) + subprocess.run(["ssh-agent", "-k"], check=True) + + def setup_ssh(self, ssh_key_base64): + """Start the ssh agent.""" + print("Starting ssh-agent") + output = subprocess.run(["ssh-agent", "-s"], check=True, stdout=subprocess.PIPE).stdout + + # Search for PID in output. + pid_regexp = re.compile(r"SSH_AGENT_PID=([0-9]+)") + match = pid_regexp.search(output.decode("utf-8")) + if match is None: + print("WARNING: could not detect ssh-agent PID.", file=sys.stderr) + print("ssh-agent will not be killed upon program termination", file=sys.stderr) + else: + pid = match.group(1) + os.environ["SSH_AGENT_PID"] = pid + self.cleanup_ssh_agent = True + + # Search for socket in output. + socket_regexp = re.compile(r"SSH_AUTH_SOCK=([^;]+);") + match = socket_regexp.search(output.decode("utf-8")) + if match is None: + print("WARNING: could not detect ssh-agent socket.", file=sys.stderr) + print("Key will be added to caller's ssh-agent (if any)", file=sys.stderr) + else: + socket = match.group(1) + os.environ["SSH_AUTH_SOCK"] = socket + + # Add the key. + ssh_key = base64.b64decode(ssh_key_base64) + ssh_key = ssh_key.replace(b"\r", b"") + with tempfile.NamedTemporaryFile() as fp: + fp.write(ssh_key) + fp.seek(0) + subprocess.run(["ssh-add", fp.name], check=True) + + def get_commit(self, commit): + """ Check our cache for a commit on GitHub. + If we don't have it yet, use the GitHub API to retrieve it.""" + if commit not in self.cached_commits: + self.cached_commits[commit] = self.py_gh_repo.get_commit(sha=commit) + return self.cached_commits[commit] + + def list_github_prs(self): + """ Return two dicts of data about open PRs on GitHub: + one for all open PRs, and one for open PRs that are not up-to-date on GitLab.""" + pr_dict = {} + pulls = self.py_gh_repo.get_pulls(state="open") + print("Rate limit after get_pulls(): {}".format(self.py_github.rate_limiting[0])) + for pull in pulls: + backlogged = False + push = True + if pull.draft and not self.sync_draft_prs: + print("Skipping draft PR {0} ({1})".format(pull.number, pull.head.ref)) + backlogged = "draft" + push = False + + pr_string = "pr{0}_{1}".format(pull.number, pull.head.ref) + + if push and pull.updated_at < datetime.now() + timedelta(minutes=-2880): + # Skip further analysis of this PR if it hasn't been updated in 48 hours. + # This helps us avoid wasting our rate limit on PRs with merge conflicts. + print("Skip pushing stale PR {0}".format(pr_string)) + backlogged = "stale" + push = False + + if push: + # Determine if this PR still needs to be pushed to GitLab. This happens in one of two cases: + # 1) we have never pushed it before + # 2) we have pushed it before, but the HEAD sha has changed since we pushed it last + log_args = ["git", "log", "--pretty=%s", "gitlab/{0}".format(pr_string)] + try: + merge_commit_msg = subprocess.run( + log_args, check=True, stdout=subprocess.PIPE, stderr=subprocess.DEVNULL).stdout + match = self.merge_msg_regex.match(merge_commit_msg.decode("utf-8")) + if match and (match.group(1) == pull.head.sha or match.group(2) == pull.head.sha): + print("Skip pushing {0} because GitLab already has HEAD {1}".format(pr_string, pull.head.sha)) + push = False + except subprocess.CalledProcessError: + # This occurs when it's a new PR that hasn't been pushed to GitLab yet. + pass + + if push: + # Check the PRs-to-be-pushed to see if any of them should be considered "backlogged". + # We currently recognize three types of backlogged PRs: + # 1) Some required "prerequisite checks" have not yet completed successfully. + # 2) The PR is based on a version of the "main branch" that has not yet been tested + # 3) Draft PRs. Handled earlier in this function. + if not backlogged and self.prereq_checks: + checks_desc = "waiting for {} check to succeed" + checks_to_verify = self.prereq_checks.copy() + pr_check_runs = self.get_commit(pull.head.sha).get_check_runs() + for check in pr_check_runs: + if check.name in checks_to_verify: + checks_to_verify.remove(check.name) + if check.conclusion != "success": + backlogged = checks_desc.format(check.name) + push = False + break + if not backlogged and checks_to_verify: + backlogged = checks_desc.format(checks_to_verify[0]) + push = False + if backlogged: + print("Skip pushing {0} because of {1}".format(pr_string, backlogged)) + + if not backlogged: + if self.main_branch and pull.base.ref == self.main_branch: + # Check if we should defer pushing/testing this PR because it is based on "too new" of a commit + # of the main branch. + tmp_pr_branch = f"temporary_{pr_string}" + subprocess.run(["git", "fetch", "--unshallow", "github", + f"refs/pull/{pull.number}/head:{tmp_pr_branch}"], check=True) + # Get the merge base between this PR and the main branch. + try: + merge_base_sha = subprocess.run( + ["git", "merge-base", tmp_pr_branch, f"github/{self.main_branch}"], + check=True, stdout=subprocess.PIPE).stdout.strip() + except subprocess.CalledProcessError: + print(f"'git merge-base {tmp_pr_branch} github/{self.main_branch}' " + "returned non-zero. Skipping") + self.unmergeable_shas.append(pull.head.sha) + continue + + repo_head_sha = subprocess.run( + ["git", "rev-parse", tmp_pr_branch], + check=True, stdout=subprocess.PIPE).stdout.decode("utf-8").strip() + + if pull.head.sha != repo_head_sha: + # If gh repo and api don't agree on what the head sha is, don't + # push. Instead log an error message and backlog the PR. + a_sha, r_sha = pull.head.sha[:7], repo_head_sha[:7] + print(f"Skip pushing {pr_string} because api says HEAD is {a_sha}, " + f"while repo says HEAD is {r_sha}") + backlogged = f"GitHub HEAD shas out of sync (repo={r_sha}, API={a_sha})" + push = False + # Check if our PR's merge base is an ancestor of the latest tested main branch commit. + elif subprocess.run( + ["git", "merge-base", "--is-ancestor", merge_base_sha, self.latest_tested_main_commit] + ).returncode == 0: + print(f"{tmp_pr_branch}'s merge base IS an ancestor of latest_tested_main " + f"{merge_base_sha} vs. {self.latest_tested_main_commit}") + try: + subprocess.run(["git", "checkout", self.latest_tested_main_commit], check=True) + subprocess.run(["git", "checkout", "-b", pr_string], check=True) + commit_msg = f"Merge {pull.head.sha} into {self.latest_tested_main_commit}" + subprocess.run( + ["git", "merge", "--no-ff", "-m", commit_msg, tmp_pr_branch], + check=True) + print(f"Merge succeeded, ready to push {pr_string} to GitLab for CI pipeline testing") + except subprocess.CalledProcessError: + print(f"Failed to merge PR {pull.number} ({pull.head.ref}) with latest tested " + f"{self.main_branch} ({self.latest_tested_main_commit}). Skipping") + self.unmergeable_shas.append(pull.head.sha) + subprocess.run(["git", "merge", "--abort"]) + backlogged = "merge conflicts with {}".format(self.main_branch) + push = False + continue + else: + print(f"Skip pushing {pr_string} because its merge base is NOT an ancestor of " + f"latest_tested_main {merge_base_sha} vs. {self.latest_tested_main_commit}") + backlogged = "base" + push = False + else: + # If the --main-branch CLI argument wasn't passed, or if this PR doesn't target that branch, + # then we will push the merge commit that was automatically created by GitHub to GitLab + # where it will kick off a CI pipeline. + try: + subprocess.run(["git", "fetch", "--unshallow", "github", + f"{pull.merge_commit_sha}:{pr_string}"], check=True) + except subprocess.CalledProcessError: + print("Failed to locally checkout PR {0} ({1}). Skipping" + .format(pull.number, pull.merge_commit_sha)) + backlogged = "GitLab failed to checkout this branch" + push = False + continue + + pr_dict[pr_string] = { + 'base_sha': pull.base.sha, + 'head_sha': pull.head.sha, + 'push': push, + 'backlogged': backlogged, + } + + def listify_dict(d): + pr_strings = sorted(d.keys()) + base_shas = [d[s]['base_sha'] for s in pr_strings] + head_shas = [d[s]['head_sha'] for s in pr_strings] + b_logged = [d[s]['backlogged'] for s in pr_strings] + return { + "pr_strings": pr_strings, + "base_shas": base_shas, + "head_shas": head_shas, + "backlogged": b_logged, + } + all_open_prs = listify_dict(pr_dict) + filtered_pr_dict = {k: v for (k, v) in pr_dict.items() if v['push']} + filtered_open_prs = listify_dict(filtered_pr_dict) + print("All Open PRs:") + for pr_string in all_open_prs['pr_strings']: + print(" {0}".format(pr_string)) + print("Filtered Open PRs:") + for pr_string in filtered_open_prs['pr_strings']: + print(" {0}".format(pr_string)) + print("Rate limit at the end of list_github_prs(): {}".format(self.py_github.rate_limiting[0])) + return [all_open_prs, filtered_open_prs] + + def list_github_protected_branches(self): + """ Return a list of protected branch names from GitHub.""" + branches = self.py_gh_repo.get_branches() + print("Rate limit after get_branches(): {}".format(self.py_github.rate_limiting[0])) + protected_branches = [br.name for br in branches if br.protected] + protected_branches = sorted(protected_branches) + if self.currently_running_sha: + print("Skip pushing {0} because it already has a pipeline running ({1})" + .format(self.main_branch, self.currently_running_sha)) + protected_branches.remove(self.main_branch) + print("Protected branches:") + for protected_branch in protected_branches: + print(" {0}".format(protected_branch)) + return protected_branches + + def list_github_tags(self): + """ Return a list of tag names from GitHub.""" + tag_list = self.py_gh_repo.get_tags() + print("Rate limit after get_tags(): {}".format(self.py_github.rate_limiting[0])) + tags = sorted([tag.name for tag in tag_list]) + print("Tags:") + for tag in tags: + print(" {0}".format(tag)) + return tags + + def setup_git_repo(self): + """Initialize a bare git repository with two remotes: + one for GitHub and one for GitLab. + If main_branch was specified, we also fetch that branch from GitHub. + """ + subprocess.run(["git", "init"], check=True) + subprocess.run(["git", "config", "user.email", "noreply@spack.io"], check=True) + subprocess.run(["git", "config", "user.name", "spackbot"], check=True) + subprocess.run(["git", "config", "advice.detachedHead", "false"], check=True) + subprocess.run(["git", "remote", "add", "github", self.github_repo], check=True) + subprocess.run(["git", "remote", "add", "gitlab", self.gitlab_repo], check=True) + + # Shallow fetch from GitLab. + self.gitlab_shallow_fetch() + + if self.main_branch: + subprocess.run(["git", "fetch", "--unshallow", "github", self.main_branch], check=True) + + def get_gitlab_pr_branches(self): + """Query GitLab for branches that have already been copied over from GitHub PRs. + Return the string output of `git branch --remotes --list gitlab/pr*`. + """ + branch_args = ["git", "branch", "--remotes", "--list", "gitlab/pr*"] + self.gitlab_pr_output = \ + subprocess.run(branch_args, check=True, stdout=subprocess.PIPE).stdout + + def gitlab_shallow_fetch(self): + """Perform a shallow fetch from GitLab""" + fetch_args = ["git", "fetch", "-q", "--depth=1", "gitlab"] + subprocess.run(fetch_args, check=True, stdout=subprocess.PIPE).stdout + + def get_open_refspecs(self, open_prs): + """Return a list of refspecs to push given a list of open PRs.""" + print("Building initial lists of refspecs to fetch and push") + pr_strings = open_prs["pr_strings"] + base_shas = open_prs["base_shas"] + backlogged = open_prs["backlogged"] + open_refspecs = [] + for open_pr, base_sha, backlog in zip(pr_strings, base_shas, backlogged): + open_refspecs.append("{0}:{0}".format(open_pr)) + print(" pushing {0} (based on {1})".format(open_pr, base_sha)) + return open_refspecs + + def update_refspecs_for_protected_branches(self, protected_branches, open_refspecs, fetch_refspecs): + """Update our refspecs lists for protected branches from GitHub.""" + for protected_branch in protected_branches: + fetch_refspecs.append("+refs/heads/{0}:refs/remotes/{0}".format(protected_branch)) + open_refspecs.append("refs/heads/{0}:refs/heads/{0}".format(protected_branch)) + return open_refspecs, fetch_refspecs + + def update_refspecs_for_tags(self, tags, open_refspecs, fetch_refspecs): + """Update our refspecs lists for tags from GitHub.""" + for tag in tags: + fetch_refspecs.append("+refs/tags/{0}:refs/tags/{0}".format(tag)) + open_refspecs.append("refs/tags/{0}:refs/tags/{0}".format(tag)) + return open_refspecs, fetch_refspecs + + def fetch_github_branches(self, fetch_refspecs): + """Perform `git fetch` for a given list of refspecs.""" + print("Fetching GitHub refs for open PRs") + fetch_args = ["git", "fetch", "-q", "--unshallow", "github"] + fetch_refspecs + subprocess.run(fetch_args, check=True) + + def build_local_branches(self, protected_branches): + """Create local branches for a list of protected branches.""" + print("Building local branches for protected branches") + for branch in protected_branches: + local_branch_name = "{0}".format(branch) + remote_branch_name = "refs/remotes/{0}".format(branch) + subprocess.run(["git", "branch", "-q", local_branch_name, remote_branch_name], check=True) + + def make_status_for_pipeline(self, pipeline): + """Generate POST data to create a GitHub status from a GitLab pipeline + API response + """ + post_data = {} + if "status" not in pipeline: + return post_data + + if pipeline["status"] == "created": + post_data["state"] = "pending" + post_data["description"] = "Pipeline has been created" + + elif pipeline["status"] == "waiting_for_resource": + post_data["state"] = "pending" + post_data["description"] = "Pipeline is waiting for resources" + + elif pipeline["status"] == "preparing": + post_data["state"] = "pending" + post_data["description"] = "Pipeline is preparing" + + elif pipeline["status"] == "pending": + post_data["state"] = "pending" + post_data["description"] = "Pipeline is pending" + + elif pipeline["status"] == "running": + post_data["state"] = "pending" + post_data["description"] = "Pipeline is running" + + elif pipeline["status"] == "manual": + post_data["state"] = "pending" + post_data["description"] = "Pipeline is running manually" + + elif pipeline["status"] == "scheduled": + post_data["state"] = "pending" + post_data["description"] = "Pipeline is scheduled" + + elif pipeline["status"] == "failed": + post_data["state"] = "error" + post_data["description"] = "Pipeline failed" + + elif pipeline["status"] == "canceled": + # Do not post canceled pipeline status to GitHub, it's confusing to our users. + # This usually happens when a PR gets force-pushed. The next time the sync script runs + # it will post a status for the newly force-pushed commit. + return {} + + elif pipeline["status"] == "skipped": + post_data["state"] = "failure" + post_data["description"] = "Pipeline was skipped" + + elif pipeline["status"] == "success": + post_data["state"] = "success" + post_data["description"] = "Pipeline succeeded" + + post_data["target_url"] = pipeline["web_url"] + return post_data + + def dedupe_pipelines(self, api_response): + """Prune pipelines API response to only include the most recent result for each SHA""" + pipelines = {} + for response in api_response: + sha = response['sha'] + if sha not in pipelines: + pipelines[sha] = response + else: + existing_datetime = dateutil.parser.parse(pipelines[sha]['updated_at']) + current_datetime = dateutil.parser.parse(response['updated_at']) + if current_datetime > existing_datetime: + pipelines[sha] = response + return pipelines + + def find_pr_sha(self, tested_sha): + api_url = self.commit_api_template.format(tested_sha) + + try: + request = urllib.request.Request(api_url) + if "GITLAB_TOKEN" in os.environ: + request.add_header("Authorization", "Bearer %s" % os.environ["GITLAB_TOKEN"]) + response = urllib.request.urlopen(request) + except OSError: + print('Failed to fetch commit for tested sha {0}'.format(tested_sha)) + return None + + response_data = response.read() + + try: + tested_commit_info = json.loads(response_data) + except json.decoder.JSONDecodeError: + print('Failed to parse response as json ({0})'.format(response_data)) + return None + + if 'title' not in tested_commit_info: + print('Returned commit object missing "Title" field') + return None + + merge_commit_msg = tested_commit_info['title'] + m = self.merge_msg_regex.match(merge_commit_msg) + + if m is None: + print('Failed to find pr_sha in merge commit message') + return None + + return m.group(1) + + def get_pipelines_for_branch(self, branch, time_threshold=None): + # Use gitlab's API to get pipeline results for the corresponding ref. + api_url = self.pipeline_api_template.format( + urllib.parse.quote_plus(branch) + ) + + # Optionally constrain the query with the provided time_threshold + if time_threshold: + api_url = "{0}&updated_after={1}".format(api_url, time_threshold) + + try: + request = urllib.request.Request(api_url) + if "GITLAB_TOKEN" in os.environ: + request.add_header("Authorization", "Bearer %s" % os.environ["GITLAB_TOKEN"]) + response = urllib.request.urlopen(request) + except OSError as inst: + print("GitLab API request error accessing {0}".format(api_url)) + print(inst) + return None + try: + pipelines = json.loads(response.read()) + except json.decoder.JSONDecodeError as inst: + print("Error parsing response to {0}".format(api_url)) + print(inst) + return None + + return self.dedupe_pipelines(pipelines) + + def post_pipeline_status(self, open_prs, protected_branches): + print("Rate limit at the beginning of post_pipeline_status(): {}".format(self.py_github.rate_limiting[0])) + pipeline_branches = [] + backlog_branches = [] + # Split up the open_prs branches into two piles: branches we force-pushed to gitlab + # and branches we deferred pushing. + for pr_branch, base_sha, head_sha, backlog in zip(open_prs["pr_strings"], + open_prs["base_shas"], + open_prs["head_shas"], + open_prs["backlogged"]): + if not backlog: + pipeline_branches.append(pr_branch) + else: + backlog_branches.append((pr_branch, head_sha, backlog)) + + pipeline_branches.extend(protected_branches) + + print('Querying pipelines to post status for:') + for branch in pipeline_branches: + # Post status to GitHub for each pipeline found. + pipelines = self.get_pipelines_for_branch(branch, self.time_threshold_brief) + if not pipelines: + continue + for sha, pipeline in pipelines.items(): + post_data = self.make_status_for_pipeline(pipeline) + if not post_data: + continue + # TODO: associate shas with protected branches, so we do not have to + # hit an endpoint here, but just use the sha we already know just like + # we do below for backlogged PR statuses. + pr_sha = self.find_pr_sha(sha) + if not pr_sha: + print('Could not find github PR sha for tested commit: {0}'.format(sha)) + print('Using tested commit to post status') + pr_sha = sha + self.create_status_for_commit(pr_sha, + branch, + post_data["state"], + post_data["target_url"], + post_data["description"]) + + # Post a status of pending/backlogged for branches we deferred pushing + print("Posting backlogged status to the following:") + base_backlog_desc = \ + "This branch's merge-base with {} is newer than the latest commit tested by GitLab".format(self.main_branch) + for branch, head_sha, reason in backlog_branches: + if reason == "stale": + print("Skip posting status for {} because it has not been updated recently".format(branch)) + continue + elif reason == "base": + desc = base_backlog_desc + url = "https://github.com/spack/spack-infrastructure/blob/main/docs/deferred_pipelines.md" + elif reason == "draft": + desc = "GitLab CI is disabled for draft PRs" + url = "" + else: + desc = reason + url = "" + self.create_status_for_commit(head_sha, branch, "pending", url, desc) + + # Post errors to any PRs that we couldn't merge to latest_tested_main_commit. + print('Posting unmergeable status to the following:') + for sha in self.unmergeable_shas: + print(' {0}'.format(sha)) + self.create_status_for_commit(sha, "", "error", "", f"PR could not be merged with {self.main_branch}") + print("Rate limit at the end of post_pipeline_status(): {}".format(self.py_github.rate_limiting[0])) + + def create_status_for_commit(self, sha, branch, state, target_url, description): + context = "OLCF Ascent (Summit)" + commit = self.get_commit(sha) + existing_statuses = commit.get_combined_status() + for status in existing_statuses.statuses: + if (status.context == context and + status.state == state and + status.description == description and + status.target_url == target_url): + print("Not posting duplicate status to {} / {}".format(branch, sha)) + return + try: + status_response = self.get_commit(sha).create_status( + state=state, + target_url=target_url, + description=description, + context=context + ) + if status_response.state != state: + print("Expected CommitStatus state {0}, got {1}".format( + state, status_response.state)) + except Exception as e_inst: + print('Caught exception posting status for {0}/{1}'.format(branch, sha)) + print(e_inst) + print(" {0} -> {1}".format(branch, sha)) + + def sync(self): + """Synchronize pull requests from GitHub as branches on GitLab.""" + + print("Initial rate limit: {}".format(self.py_github.rate_limiting[0])) + reset_time = datetime.utcfromtimestamp(self.py_github.rate_limiting_resettime).strftime('%Y-%m-%d %H:%M:%S') + print("Rate limit will refresh at: {} UTC".format(reset_time)) + + # Setup SSH command for communicating with GitLab. + os.environ["GIT_SSH_COMMAND"] = "ssh -F /dev/null -o UserKnownHostsFile=/dev/null -o StrictHostKeyChecking=no" + + # Work inside a temporary directory that will be deleted when this script terminates. + with tempfile.TemporaryDirectory() as tmpdirname: + os.chdir(tmpdirname) + + # Setup the local repo with two remotes. + self.setup_git_repo() + + if self.main_branch: + # Find the currently running main branch pipeline, if any, and get the sha. + # Also get the latest commit on the main branch that has a completed pipeline. + main_branch_pipelines = self.get_pipelines_for_branch(self.main_branch) + for sha, pipeline in main_branch_pipelines.items(): + if self.latest_tested_main_commit is None and \ + (pipeline['status'] == "success" or pipeline['status'] == "failed"): + self.latest_tested_main_commit = sha + + if self.currently_running_sha is None and pipeline['status'] == "running": + self.currently_running_sha = sha + + if self.latest_tested_main_commit and self.currently_running_sha: + break + + print("Latest completed {0} pipeline: {1}".format(self.main_branch, self.latest_tested_main_commit)) + print("Currently running {0} pipeline: {1}".format(self.main_branch, self.currently_running_sha)) + + # Retrieve open PRs from GitHub. + all_open_prs, open_prs = self.list_github_prs() + + # Get protected branches on GitHub. + protected_branches = self.list_github_protected_branches() + + # Get tags on GitHub. + tags = self.list_github_tags() + + # Get refspecs for open PRs and protected branches. + open_refspecs = self.get_open_refspecs(open_prs) + fetch_refspecs = [] + self.update_refspecs_for_protected_branches(protected_branches, open_refspecs, fetch_refspecs) + self.update_refspecs_for_tags(tags, open_refspecs, fetch_refspecs) + + # Sync open GitHub PRs and protected branches to GitLab. + self.fetch_github_branches(fetch_refspecs) + self.build_local_branches(protected_branches) + if open_refspecs: + print("Syncing to GitLab") + push_args = ["git", "push", "--porcelain", "-f", "gitlab"] + open_refspecs + subprocess.run(push_args, check=True) + + # Post pipeline status to GitHub for each open PR, if enabled + if self.post_status: + print('Posting pipeline status for open PRs and protected branches') + self.post_pipeline_status(all_open_prs, protected_branches) + + +if __name__ == "__main__": + # Parse command-line arguments. + parser = argparse.ArgumentParser(description="Sync GitHub PRs to GitLab") + parser.add_argument("github_project", help="GitHub project (org/repo or user/repo)") + parser.add_argument("gitlab_repo", help="Full clone URL for GitLab") + parser.add_argument("gitlab_host", help="GitLab web host") + parser.add_argument("gitlab_project", help="GitLab project (org/repo or user/repo)") + parser.add_argument("--disable-status-post", action="store_true", default=False, + help="Do not post pipeline status to each GitHub PR") + parser.add_argument("--sync-draft-prs", action="store_true", default=False, + help="Copy draft PRs from GitHub to GitLab") + parser.add_argument("--pr-mirror-bucket", default=None, + help="Delete mirrors for closed PRs from the specified S3 bucket") + parser.add_argument("--main-branch", default=None, + help="""If provided, we check if there is a currently running +pipeline for this branch. If so, we defer syncing any subsequent commits in an effort +to not interrupt this pipeline. We also defer pushing any PR branches that are based +on a commit of the main branch that is newer than the latest commit tested by GitLab.""") + parser.add_argument("--prereq-check", nargs="+", default=False, + help="Only push branches that have already passed this GitHub check") + + args = parser.parse_args() + + ssh_key_base64 = os.getenv("GITLAB_SSH_KEY_BASE64") + if ssh_key_base64 is None: + raise Exception("GITLAB_SSH_KEY_BASE64 environment is not set") + + if "GITHUB_TOKEN" not in os.environ: + raise Exception("GITHUB_TOKEN environment is not set") + + bridge = SpackCIBridge(gitlab_repo=args.gitlab_repo, + gitlab_host=args.gitlab_host, + gitlab_project=args.gitlab_project, + github_project=args.github_project, + disable_status_post=args.disable_status_post, + sync_draft_prs=args.sync_draft_prs, + main_branch=args.main_branch, + prereq_checks=args.prereq_check) + bridge.setup_ssh(ssh_key_base64) + bridge.sync() diff --git a/.gitlab/config/ccache.cmake b/.gitlab/config/ccache.cmake new file mode 100644 index 0000000000..5e5f90c66b --- /dev/null +++ b/.gitlab/config/ccache.cmake @@ -0,0 +1,61 @@ +##============================================================================ +## Copyright (c) Kitware, Inc. +## All rights reserved. +## See LICENSE.txt for details. +## +## This software is distributed WITHOUT ANY WARRANTY; without even +## the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR +## PURPOSE. See the above copyright notice for more information. +##============================================================================ + +cmake_minimum_required(VERSION 3.0 FATAL_ERROR) + +set(version 4.6.1) +set(arch x86_64) + +if(CMAKE_HOST_SYSTEM_NAME STREQUAL "Linux") + set(sha256sum da1e1781bc1c4b019216fa16391af3e1daaee7e7f49a8ec9b0cdc8a1d05c50e2) + set(base_url https://github.com/ccache/ccache/releases/download) + set(platform linux) + set(extension tar.xz) +elseif(CMAKE_HOST_SYSTEM_NAME STREQUAL "Darwin") + set(sha256sum 3e36ba8c80fbf7f2b95fe0227b9dd1ca6143d721aab052caf0d5729769138059) + set(full_url https://gitlab.kitware.com/utils/ci-utilities/-/package_files/534/download) + set(filename ccache) + set(extension tar.gz) +elseif(CMAKE_HOST_SYSTEM_NAME STREQUAL "Windows") + set(sha256sum a6c6311973aa3d2aae22424895f2f968e5d661be003b25f1bd854a5c0cd57563) + set(base_url https://github.com/ccache/ccache/releases/download) + set(platform windows) + set(extension zip) +else() + message(FATAL_ERROR "Unrecognized platform ${CMAKE_HOST_SYSTEM_NAME}") +endif() + +if(NOT DEFINED filename) + set(filename "ccache-${version}-${platform}-${arch}") +endif() + +set(tarball "${filename}.${extension}") + +if(NOT DEFINED full_url) + set(full_url "${base_url}/v${version}/${tarball}") +endif() + +file(DOWNLOAD + "${full_url}" $ENV{CCACHE_INSTALL_DIR}/${tarball} + EXPECTED_HASH SHA256=${sha256sum} + SHOW_PROGRESS + ) + +execute_process( + COMMAND ${CMAKE_COMMAND} -E tar xf ${tarball} + WORKING_DIRECTORY $ENV{CCACHE_INSTALL_DIR} + RESULT_VARIABLE extract_results + ) + +if(extract_results) + message(FATAL_ERROR "Extracting `${tarball}` failed: ${extract_results}.") +endif() + +file(RENAME $ENV{CCACHE_INSTALL_DIR}/${filename} $ENV{CCACHE_INSTALL_DIR}/ccache) diff --git a/.gitlab/config/dynamic_pipeline.yml.in b/.gitlab/config/dynamic_pipeline.yml.in new file mode 100644 index 0000000000..b1a1ba01c9 --- /dev/null +++ b/.gitlab/config/dynamic_pipeline.yml.in @@ -0,0 +1,9 @@ +child_pipeline_{branch}: + variables: + DOWNSTREAM_COMMIT_SHA: '{commit}' + DOWNSTREAM_BRANCH_REF: '{branch}' + trigger: + include: + - project: 'ci/csc303_crusher/dev/adios2' + ref: '{branch}' + file: '.gitlab/gitlab-ci-crusher.yml' diff --git a/.gitlab/config/generate_pipelines.py b/.gitlab/config/generate_pipelines.py new file mode 100755 index 0000000000..4d75b55bd3 --- /dev/null +++ b/.gitlab/config/generate_pipelines.py @@ -0,0 +1,90 @@ +#!/usr/bin/env python3 + +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +# +# generate_pipeline.py +# +# Created: May 19, 2023 +# Author: Vicente Adolfo Bolea Sanchez + +from datetime import datetime +import argparse +import requests +import time +import re +import urllib3 +# Remove annoying warning about insecure connection (self-signed cert). +urllib3.disable_warnings(urllib3.exceptions.InsecureRequestWarning) + + +def is_date_after(date, days): + deadline_sec = int(time.time()) - (days * 86400) + utc_dt = datetime.strptime(date, '%Y-%m-%dT%H:%M:%SZ') + timestamp_sec = (utc_dt - datetime(1970, 1, 1)).total_seconds() + return timestamp_sec > deadline_sec + + +def request_dict(url): + r = requests.get(url + '?per_page=100', verify=False) + return r.json() + + +parser = argparse.ArgumentParser( + prog='generate_pipeline.py', + description='Generate Dynamic pipelines for Gitlab') +parser.add_argument( + '-u', '--gl-url', required=True, + help='Base URL for Gitlab remote. Ex: https://code.olcf.ornl.gov/') +parser.add_argument( + '-n', '--gh-name', required=True, + help='Full name of the GitHub project. Ex: ornladios/ADIOS2') +parser.add_argument( + '-c', '--gh-context', default='OLCF Crusher (Frontier)', + help='Name of the status in GitHub (A.K.A context)') +parser.add_argument( + '-p', '--project_id', required=True, + help='Gitlab internal project ID of the project.') +parser.add_argument( + '-d', '--days', type=int, default=1, + help='How many days back to search for commits') +parser.add_argument( + '-m', '--max', type=int, default=3, + help='Maximum amount of pipelines computed') +parser.add_argument( + '-f', '--template_file', required=True, + help='Template file of the pipeline `{branch}` will be substituted') +args = parser.parse_args() + + +with open(args.template_file, "r") as fd: + template_str = fd.read() + gl_url = args.gl_url + "/api/v4/projects/" + str(args.project_id) + gh_url = 'https://api.github.com/repos/' + args.gh_name + branches = request_dict(gl_url + "/repository/branches") + num_pipeline = 0 + for branch in branches: + # Convert to ISO 8601 date format. + date_stamp = branch['commit']['committed_date'].split('.')[0] + "Z" + if num_pipeline < args.max and is_date_after(date_stamp, args.days): + commit_sha = branch['commit']['id'] + # Backported branches use the merge head + gh_commit_sha = commit_sha + if re.fullmatch(r'^pr\d+_.*$', branch['name']): + gh_commit_sha = branch['commit']['parent_ids'][1] + + # Quit if GitHub does not have the commit + if 'sha' not in request_dict(gh_url + "/commits/" + gh_commit_sha): + continue + + # Query GitHub for the status of this commit + commit = request_dict(gh_url + "/commits/" + + gh_commit_sha + "/status") + status_found = False + for status in commit['statuses']: + if status['context'] == args.gh_context: + status_found = True + if not status_found: + num_pipeline += 1 + print(template_str.format( + branch=branch['name'], commit=commit_sha)) diff --git a/.gitlab/kokkos.sh b/.gitlab/config/kokkos.sh similarity index 90% rename from .gitlab/kokkos.sh rename to .gitlab/config/kokkos.sh index 698fe84ac7..2504b90637 100755 --- a/.gitlab/kokkos.sh +++ b/.gitlab/config/kokkos.sh @@ -23,7 +23,6 @@ cmake -S "$WORKDIR/kokkos-$VERSION" -B "$WORKDIR/kokkos_build" \ "-DCMAKE_CXX_STANDARD:STRING=17" \ "-DCMAKE_CXX_EXTENSIONS:BOOL=OFF" \ "-DCMAKE_POSITION_INDEPENDENT_CODE:BOOL=ON" \ - "-DCMAKE_CXX_COMPILER:STRING=$WORKDIR/kokkos-$VERSION/bin/nvcc_wrapper" \ $* cmake --build "$WORKDIR/kokkos_build" diff --git a/.gitlab/gitlab-ci-ascent.yml b/.gitlab/gitlab-ci-ascent.yml index 1d1e5c0a95..02e50f4584 100644 --- a/.gitlab/gitlab-ci-ascent.yml +++ b/.gitlab/gitlab-ci-ascent.yml @@ -21,6 +21,7 @@ CUDAHOSTCXX: "g++" CUSTOM_CI_BUILDS_DIR: "/gpfs/wolf/csc303/scratch/vbolea/ci/adios2" GITLAB_SITE: "OLCF Ascent" + CI_BIN_DIR: "$CI_PROJECT_DIR/build" SCHEDULER_PARAMETERS: -P CSC303 -W 1:00 -nnodes 1 -alloc_flags gpudefault before_script: - *setup_env_ecpci @@ -68,18 +69,22 @@ ascent-kokkos-cuda: libffi hdf5 cmake + KOKKOS_VER: 3.7.01 + Kokkos_DIR: "$CI_PROJECT_DIR/deps/kokkos_install" + # Cmake would not install a RPATH inside the source dir + LD_LIBRARY_PATH: "$Kokkos_DIR/lib64/:$LD_LIBRARY_PATH" KOKKOS_OPTS: >- -DKokkos_ARCH_POWER9=ON -DKokkos_ARCH_VOLTA70=ON -DKokkos_ENABLE_CUDA=ON -DKokkos_ENABLE_CUDA_LAMBDA=ON - -DCMAKE_INSTALL_PREFIX:PATH=$CI_BUILDS_DIR/kokkos_install - - Kokkos_DIR: $CI_BUILDS_DIR/kokkos_install + -DCMAKE_INSTALL_PREFIX:PATH=$Kokkos_DIR + -DCMAKE_CXX_COMPILER:STRING=$CI_PROJECT_DIR/deps/kokkos-$KOKKOS_VER/bin/nvcc_wrapper before_script: - *setup_env_ecpci + - mkdir -p "$CI_PROJECT_DIR/deps" - ccache -z - - .gitlab/kokkos.sh "$CI_BUILDS_DIR" "3.7.01" $KOKKOS_OPTS + - .gitlab/config/kokkos.sh "$CI_PROJECT_DIR/deps" "$KOKKOS_VER" $KOKKOS_OPTS extends: - .ascent-common @@ -127,4 +132,4 @@ sync-github-prs: CUSTOM_CI_BUILDS_DIR: "/gpfs/wolf/csc303/scratch/vbolea/ci/adios2" script: - export PATH="/gpfs/wolf/csc303/scratch/vbolea/ci/utils:$PATH" - - SpackCIBridge.py ornladios/ADIOS2 git@code.ornl.gov:ecpcitest/adios2.git https://code.ornl.gov/ ecpcitest/adios2 --prereq-check=format --prereq-check=git_checks + - .gitlab/config/SpackCIBridge.py ornladios/ADIOS2 git@code.ornl.gov:ecpcitest/adios2.git https://code.ornl.gov/ ecpcitest/adios2 --prereq-check=format --prereq-check=git_checks diff --git a/.gitlab/gitlab-ci-crusher.yml b/.gitlab/gitlab-ci-crusher.yml new file mode 100644 index 0000000000..a78a3db90d --- /dev/null +++ b/.gitlab/gitlab-ci-crusher.yml @@ -0,0 +1,223 @@ +# Ad-hoc build that runs in the ECP Hardware, concretely in OLCF Crusher. + +stages: + - pre + - setup + - build + - post + +.setup_env_ecpci: &setup_env_ecpci | + git fetch + source scripts/ci/gitlab-ci/setup-vars.sh + git checkout "$CI_COMMIT_REF" + module purge + module load ${JOB_MODULES} + module list + export PATH="${CCACHE_INSTALL_DIR}/ccache:$PATH" + +.install_ccache: &install_ccache | + mkdir -p "$CCACHE_INSTALL_DIR" + cmake --version + cmake -VV -P .gitlab/config/ccache.cmake + ccache -z + ccache -s + +.crusher-common: + rules: + - if: $CI_PIPELINE_SOURCE =~ /parent_pipeline|web/ + interruptible: true + variables: + CCACHE_BASEDIR: "/lustre/orion/csc303/scratch/" + CCACHE_DIR: "/lustre/orion/csc303/scratch/vbolea/ci/adios2/ccache" + CUSTOM_CI_BUILDS_DIR: "/lustre/orion/csc303/scratch/vbolea/ci/adios2/runtime" + + # -isystem= is not affected by CCACHE_BASEDIR, thus we must ignore it + CCACHE_IGNOREOPTIONS: "-isystem=*" + CCACHE_NOHASHDIR: "true" + CCACHE_INSTALL_DIR: "$CI_PROJECT_DIR/deps/ccache_install" + + CMAKE_BUILD_TYPE: "RelWithDebInfo" + CMAKE_GENERATOR: "Ninja" + CMAKE_PREFIX_PATH: "$CI_PROJECT_DIR/deps/kokkos_install" + + # We do not want to use the user's ~/.gitconfig + GIT_CONFIG_GLOBAL: "true" + GITLAB_SITE: "OLCF Crusher" + CI_BIN_DIR: "$CI_PROJECT_DIR/build" + +.setup-common: + stage: setup + tags: [ shell ] + before_script: + - *setup_env_ecpci + - *install_ccache + script: + - bash scripts/ci/gitlab-ci/run.sh update + artifacts: + expire_in: 24 hours + when: always + paths: + - deps/*install/ + - build/ + +.build-common: + stage: build + tags: [ slurm ] + variables: + SCHEDULER_PARAMETERS: "-ACSC303_crusher -t30 --nice=0 -c32 --gpus=4 -N 1" + before_script: + - *setup_env_ecpci + script: + - bash scripts/ci/gitlab-ci/run.sh configure + - bash scripts/ci/gitlab-ci/run.sh build + - bash scripts/ci/gitlab-ci/run.sh test + after_script: + - *setup_env_ecpci + - bash scripts/ci/gitlab-ci/run.sh submit + - ccache -s + +.kokkos-hip-common: + variables: + Kokkos_DIR: "$CI_PROJECT_DIR/deps/kokkos_install" + # Cmake would not install a RPATH inside the source dir + LD_LIBRARY_PATH: "$Kokkos_DIR/lib64/:$LD_LIBRARY_PATH" + # Order matters + JOB_MODULES: >- + craype-accel-amd-gfx90a + gcc/12 + cmake + rocm/5.4.3 + git + ninja + libffi + hdf5 + zstd + +setup:crusher-kokkos-hip: + variables: + KOKKOS_VER: 3.7.01 + KOKKOS_OPTS: >- + -DCMAKE_INSTALL_PREFIX:PATH=$Kokkos_DIR + -DCMAKE_CXX_COMPILER:FILEPATH=/opt/rocm-5.4.3/hip/bin/hipcc + -DKokkos_ARCH_VEGA90A:BOOL=ON + -DKokkos_ENABLE_HIP:BOOL=ON + -DKokkos_ENABLE_HIP_RELOCATABLE_DEVICE_CODE:BOOL=OFF + -DKokkos_ENABLE_SERIAL:BOOL=ON + extends: + - .crusher-common + - .setup-common + - .kokkos-hip-common + before_script: + - *setup_env_ecpci + - *install_ccache + - .gitlab/config/kokkos.sh "$CI_PROJECT_DIR/deps" "$KOKKOS_VER" $KOKKOS_OPTS + +build:crusher-kokkos-hip: + extends: + - .crusher-common + - .build-common + - .kokkos-hip-common + before_script: + - *setup_env_ecpci + needs: + - setup:crusher-kokkos-hip + dependencies: + - setup:crusher-kokkos-hip + +.cray-common: + variables: + # Order matters + JOB_MODULES: >- + PrgEnv-cray + cmake + git + ninja + libffi + zstd + DefApps + extends: + - .crusher-common + +setup:crusher-cray: + extends: + - .setup-common + - .cray-common + +build:crusher-cray: + extends: + - .build-common + - .cray-common + needs: + - setup:crusher-cray + dependencies: + - setup:crusher-cray + +.report-status: + rules: + - if: $CI_PIPELINE_SOURCE =~ /parent_pipeline|web/ + tags: [ shell ] + variables: + STATUS_PROJECT: ornladios/ADIOS2 + STATUS_NAME: OLCF Crusher (Frontier) + before_script: | + git fetch + source scripts/ci/gitlab-ci/setup-vars.sh + git checkout "$CI_COMMIT_REF" + script: > + curl -X POST -H @${GITHUB_CURL_HEADERS} + "https://api.github.com/repos/${STATUS_PROJECT}/statuses/${CI_ORIGINAL_SHA}" + -d "{\"state\":\"${CI_JOB_NAME}\", \"context\":\"${STATUS_NAME}\",\"target_url\":\"${CI_PIPELINE_URL}\",\"description\":\"${STATUS_DESC}\"}" + environment: + name: reporting-github + +pending: + stage: pre + variables: + STATUS_DESC: Pipeline is running + extends: + - .report-status +success: + stage: post + variables: + STATUS_DESC: Pipeline succeeded + extends: + - .report-status + dependencies: + - build:crusher-kokkos-hip + - build:crusher-cray +failure: + stage: post + rules: + - if: $CI_PIPELINE_SOURCE =~ /parent_pipeline|web/ + when: on_failure + variables: + STATUS_DESC: Pipeline failed + extends: + - .report-status + dependencies: + - build:crusher-kokkos-hip + - build:crusher-cray + +generate_pipelines: + stage: setup + tags: [ shell ] + rules: + - if: $CI_PIPELINE_SOURCE == "schedule" + variables: + CUSTOM_CI_BUILDS_DIR: "/lustre/orion/csc303/scratch/vbolea/ci/adios2/runtime" + script: + - .gitlab/config/generate_pipelines.py -u "https://code.olcf.ornl.gov/" -p 78 -n ornladios/ADIOS2 -f .gitlab/config/dynamic_pipeline.yml.in > generated_pipelines.yml + artifacts: + paths: + - generated_pipelines.yml + +launch_pipelines: + stage: build + rules: + - if: $CI_PIPELINE_SOURCE == "schedule" + variables: + CUSTOM_CI_BUILDS_DIR: "/lustre/orion/csc303/scratch/vbolea/ci/adios2/runtime" + trigger: + include: + - artifact: generated_pipelines.yml + job: generate_pipelines diff --git a/flake8.cfg b/flake8.cfg index 5525546057..39b0361140 100644 --- a/flake8.cfg +++ b/flake8.cfg @@ -3,4 +3,4 @@ max-line-length = 80 max-complexity = 1000 format = pylint ignore = E302,F401,F403,F405,F999,W504 -exclude = thirdparty/ +exclude = thirdparty/,.gitlab/config/SpackCIBridge.py diff --git a/scripts/ci/cmake-v2/ci-crusher-cray.cmake b/scripts/ci/cmake-v2/ci-crusher-cray.cmake new file mode 100644 index 0000000000..a148430830 --- /dev/null +++ b/scripts/ci/cmake-v2/ci-crusher-cray.cmake @@ -0,0 +1,32 @@ +# Client maintainer: vicente.bolea@kitware.com + +set(ENV{CC} craycc) +set(ENV{CXX} craycxx) + +set(dashboard_cache " +ADIOS2_USE_BZip2:BOOL=OFF +ADIOS2_USE_DataMan:BOOL=ON +ADIOS2_USE_Fortran:BOOL=OFF +ADIOS2_USE_MPI:BOOL=OFF +ADIOS2_USE_HDF5:BOOL=OFF +ADIOS2_USE_PNG:BOOL=OFF +ADIOS2_USE_Python:BOOL=OFF +ADIOS2_USE_SST:BOOL=ON +ADIOS2_USE_ZeroMQ:STRING=OFF +ADIOS2_USE_ZFP:BOOL=OFF +ADIOS2_USE_SZ:BOOL=OFF +ADIOS2_USE_Blosc:BOOL=OFF + +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache +CMAKE_DISABLE_FIND_PACKAGE_BISON=ON +CMAKE_DISABLE_FIND_PACKAGE_FLEX=ON +") + +set(CTEST_TEST_ARGS + PARALLEL_LEVEL 8 + EXCLUDE "Engine.Staging.TestThreads.*" + ) +set(CTEST_CMAKE_GENERATOR "Ninja") +list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-crusher-kokkos-hip.cmake b/scripts/ci/cmake-v2/ci-crusher-kokkos-hip.cmake new file mode 100644 index 0000000000..afe52c92e6 --- /dev/null +++ b/scripts/ci/cmake-v2/ci-crusher-kokkos-hip.cmake @@ -0,0 +1,31 @@ +# Client maintainer: vicente.bolea@kitware.com + +set(ENV{CC} gcc) +set(ENV{CXX} g++) +set(ENV{FC} gfortran) + +set(dashboard_cache " +ADIOS2_USE_BZip2:BOOL=OFF +ADIOS2_USE_DataMan:BOOL=ON +ADIOS2_USE_Fortran:BOOL=OFF +ADIOS2_USE_MPI:BOOL=OFF +ADIOS2_USE_HDF5:BOOL=OFF +ADIOS2_USE_PNG:BOOL=OFF +ADIOS2_USE_Python:BOOL=OFF +ADIOS2_USE_SST:BOOL=ON +ADIOS2_USE_Kokkos=ON + +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache +CMAKE_CUDA_COMPILER_LAUNCHER=ccache +CMAKE_DISABLE_FIND_PACKAGE_BISON=ON +CMAKE_DISABLE_FIND_PACKAGE_FLEX=ON +") + +set(CTEST_TEST_ARGS + PARALLEL_LEVEL 8 + EXCLUDE "Engine.Staging.TestThreads.*" + ) +set(CTEST_CMAKE_GENERATOR "Ninja") +list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/gitlab-ci/run.sh b/scripts/ci/gitlab-ci/run.sh index 02ee8c630f..1ddfb0c9dc 100755 --- a/scripts/ci/gitlab-ci/run.sh +++ b/scripts/ci/gitlab-ci/run.sh @@ -1,13 +1,8 @@ #!/bin/bash --login +# shellcheck disable=SC1091 set -e -export CI_BUILD_NAME="${CI_COMMIT_BRANCH#github/}_${CI_JOB_NAME}" -export CI_COMMIT_REF=${CI_COMMIT_SHA} -export CI_ROOT_DIR="${CI_PROJECT_DIR}/.." -export CI_SITE_NAME="${GITLAB_SITE}" -export CI_SOURCE_DIR="${CI_PROJECT_DIR}" - -export CI_BIN_DIR="${CI_ROOT_DIR}/${CI_BUILD_NAME}" +source scripts/ci/gitlab-ci/setup-vars.sh readonly CTEST_SCRIPT=scripts/ci/cmake-v2/ci-${CI_JOB_NAME}.cmake if [ ! -f "$CTEST_SCRIPT" ] @@ -23,23 +18,13 @@ then exit 2 fi -# In OLCF Gitlab our PRs branches tip commit is not the head commit of the PR, -# it is instead the so called merged_commit_sha as described in the GitHub Rest -# API for pull requests. We need to report to the CDASH the original commit -# thus, we set it here using the CTEST_UPDATE_VERSION_OVERRIDE CMake variable -if [[ ${CI_COMMIT_BRANCH} =~ ^pr[0-9]+_.*$ ]] -then - # Original commit it is always its 2nd parent - original_sha=$(git rev-parse "${CI_COMMIT_REF}^2") - readonly UPDATE_ARGS="-DCTEST_UPDATE_VERSION_OVERRIDE=${original_sha}" -fi - declare -a CTEST_STEP_ARGS=("-Ddashboard_full=OFF") case ${STEP} in - update) CTEST_STEP_ARGS+=("${UPDATE_ARGS}") ;; - build) CTEST_STEP_ARGS+=("-Ddashboard_do_submit=OFF") ;; - test) CTEST_STEP_ARGS+=("-Ddashboard_do_submit=OFF") ;; - submit) CTEST_STEP_ARGS+=("-Ddashboard_do_submit_only=ON" "-Ddashboard_do_build=ON" "-Ddashboard_do_test=ON") ;; + update) CTEST_STEP_ARGS+=("${CI_UPDATE_ARGS}") ;; + configure) CTEST_STEP_ARGS+=("-Ddashboard_do_submit=OFF") ;; + build) CTEST_STEP_ARGS+=("-Ddashboard_do_submit=OFF") ;; + test) CTEST_STEP_ARGS+=("-Ddashboard_do_submit=OFF") ;; + submit) CTEST_STEP_ARGS+=("-Ddashboard_do_submit_only=ON" "-Ddashboard_do_configure=ON" "-Ddashboard_do_build=ON" "-Ddashboard_do_test=ON") ;; esac CTEST_STEP_ARGS+=("-Ddashboard_do_${STEP}=ON") diff --git a/scripts/ci/gitlab-ci/setup-vars.sh b/scripts/ci/gitlab-ci/setup-vars.sh new file mode 100755 index 0000000000..67d1435ef5 --- /dev/null +++ b/scripts/ci/gitlab-ci/setup-vars.sh @@ -0,0 +1,41 @@ +#!/bin/bash --login +set -e + +# Strip the job name prefix +export CI_JOB_NAME="${CI_JOB_NAME#*:}" +export CI_BUILD_NAME="${CI_COMMIT_BRANCH#github/}_${CI_JOB_NAME}" +export CI_ROOT_DIR="${CI_PROJECT_DIR}/.." +export CI_SITE_NAME="${GITLAB_SITE}" +export CI_SOURCE_DIR="${CI_PROJECT_DIR}" + +if [ -z "$DOWNSTREAM_COMMIT_SHA" ] +then + export CI_COMMIT_REF="${CI_COMMIT_SHA}" +else + export CI_COMMIT_REF="${DOWNSTREAM_COMMIT_SHA}" +fi + +if [ -z "$DOWNSTREAM_BRANCH_REF" ] +then + export CI_BRANCH_REF="${CI_COMMIT_REF_NAME}" +else + export CI_BRANCH_REF="${DOWNSTREAM_BRANCH_REF}" +fi + +# In OLCF Crusher we must fix the build directory in the yml. +if [ -z "$CI_BIN_DIR" ] +then + export CI_BIN_DIR="${CI_ROOT_DIR}/${CI_BUILD_NAME}" +fi + +# In OLCF Gitlab our PRs branches tip commit is not the head commit of the PR, +# it is instead the so called merged_commit_sha as described in the GitHub Rest +# API for pull requests. We need to report to the CDASH the original commit +# thus, we set it here using the CTEST_UPDATE_VERSION_OVERRIDE CMake variable +if [[ ${CI_BRANCH_REF} =~ ^pr[0-9]+_.*$ ]] +then + # Original commit it is always its 2nd parent + ci_original_sha=$(git rev-parse "${CI_COMMIT_REF}^2") + export CI_ORIGINAL_SHA="$ci_original_sha" + export CI_UPDATE_ARGS="-DCTEST_UPDATE_VERSION_OVERRIDE=${CI_ORIGINAL_SHA}" +fi From 55fe563fa2941995f67af748308feb331af14a72 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Thu, 25 May 2023 18:31:52 -0400 Subject: [PATCH 005/183] ci,crusher: minor tweaks (cherry picked from commit 731616ff4922b67bd271cb39ecdb4fa29e2ea97d) --- .gitlab/config/generate_pipelines.py | 2 +- .gitlab/gitlab-ci-ascent.yml | 1 - scripts/ci/gitlab-ci/setup-vars.sh | 2 ++ 3 files changed, 3 insertions(+), 2 deletions(-) diff --git a/.gitlab/config/generate_pipelines.py b/.gitlab/config/generate_pipelines.py index 4d75b55bd3..17b8068b99 100755 --- a/.gitlab/config/generate_pipelines.py +++ b/.gitlab/config/generate_pipelines.py @@ -49,7 +49,7 @@ def request_dict(url): '-d', '--days', type=int, default=1, help='How many days back to search for commits') parser.add_argument( - '-m', '--max', type=int, default=3, + '-m', '--max', type=int, default=2, help='Maximum amount of pipelines computed') parser.add_argument( '-f', '--template_file', required=True, diff --git a/.gitlab/gitlab-ci-ascent.yml b/.gitlab/gitlab-ci-ascent.yml index 02e50f4584..c4e453df0d 100644 --- a/.gitlab/gitlab-ci-ascent.yml +++ b/.gitlab/gitlab-ci-ascent.yml @@ -128,7 +128,6 @@ sync-github-prs: only: - schedules variables: - GIT_STRATEGY: none CUSTOM_CI_BUILDS_DIR: "/gpfs/wolf/csc303/scratch/vbolea/ci/adios2" script: - export PATH="/gpfs/wolf/csc303/scratch/vbolea/ci/utils:$PATH" diff --git a/scripts/ci/gitlab-ci/setup-vars.sh b/scripts/ci/gitlab-ci/setup-vars.sh index 67d1435ef5..6ca88e616c 100755 --- a/scripts/ci/gitlab-ci/setup-vars.sh +++ b/scripts/ci/gitlab-ci/setup-vars.sh @@ -38,4 +38,6 @@ then ci_original_sha=$(git rev-parse "${CI_COMMIT_REF}^2") export CI_ORIGINAL_SHA="$ci_original_sha" export CI_UPDATE_ARGS="-DCTEST_UPDATE_VERSION_OVERRIDE=${CI_ORIGINAL_SHA}" +else + export CI_ORIGINAL_SHA="${CI_COMMIT_REF}" fi From 86b792f61367b3f610e5ee34a6c0e33d76722ba1 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Wed, 24 May 2023 20:34:20 -0400 Subject: [PATCH 006/183] docs: update whatsnew (cherry picked from commit 49e80a17ed4dd68ee6a333a93eb8736d9cda382c) --- .../source/introduction/whatsnew.rst | 46 +++++++++++-------- 1 file changed, 27 insertions(+), 19 deletions(-) diff --git a/docs/user_guide/source/introduction/whatsnew.rst b/docs/user_guide/source/introduction/whatsnew.rst index af8aae7c08..39cefb7509 100644 --- a/docs/user_guide/source/introduction/whatsnew.rst +++ b/docs/user_guide/source/introduction/whatsnew.rst @@ -1,26 +1,34 @@ -################## -What's new in 2.8? -################## +================== +What's new in 2.9? +================== -Important changes to the API +Summary +======= - * **adios2::Mode::ReadRandomAccess** mode is introduced for reading files with access to all steps. - BeginStep/EndStep calls are *NOT allowed*. SetStepSelection() can be used to access specific steps in the file. - * **adios2::Mode::Read** mode now requires using BeginStep/EndStep loop to access steps serially one by one. Variable inquiry - fails outside BeginStep/EndStep sections. You need to modify your Open() statement to use the random-access mode if your - code wants to access all steps in any order in an existing file. - * **adios2::ADIOS::EnterComputationBlock()**, **adios2::ADIOS::ExitComputationBlock()** are hints to ADIOS that a process is in a computing (i.e. non-communicating) phase. BP5 asynchronous I/O operations can schedule writing during such phases to avoid interfering with the application's own communication. - * GPU-aware I/O supports passing device-memory data pointers to the ADIOS2 `Put()/Get()` functions, and ADIOS2 will automatically download/upload data from/to the device during I/O. Alternatively, an extra member function of the Variable class, **SetMemorySpace(const adios2::MemorySpace mem)** can explicitly tell ADIOS2 whether the pointer points to device memory or host memory. +This is a major release with new features and lots of bug fixes. -New features +General +------- - * **BP5** data format and engine. This new engine optimizes for many variables and many steps at large scale. - It is also more memory efficient than previous engines, see :ref:`BP5`. - * **Plugin** architecture to support external *engines* and *operators* outside the ADIOS2 installation, see :ref:`Plugins` - * **GPU-Aware I/O** for reading/writing data to/from device memory, using CUDA (NVidia GPUs only), see :ref:`GPU-aware I/O` +- GPU-Aware I/O enabled by using Kokkos. Device pointers can be passed to Put()/Get() calls directly. Kokkos 3.7.x required for this release. Works with CUDA, HIP and Kokkos applications. https://adios2.readthedocs.io/en/latest/advanced/gpu_aware.html#gpu-aware-i-o +- GPU-compression. MGARD and ZFP operators can compress data on GPU if they are built for GPU. MGARD operator can be fed with host/device pointers and will move data automaticaly. ZFP operator requires matching data and compressor location. +- Joined Array concept (besides Global Array and Local Array), which lets writers dump Local Arrays (no offsets no global shape) that are put together into a Global Array by the reader. One dimension of the arrays is selected for this join operation, while other dimensions must be the same for all writers. https://adios2.readthedocs.io/en/latest/components/components.html?highlight=Joined#shapes -Other changes +File I/O +-------- - * SST scales better for large N-to-1 staging, by managing the limits of outstanding remote direct memory access requests. - Of course one still introduces a literal bottleneck with such a pattern into an in situ workflow. +- Default File engine is now BP5. If for some reason this causes problems, manually specify using "BP4" for your application. +- BP5 engine supports multithreaded reading to accelerate read performance for low-core counts. +- BP5 Two level metadata aggregation and reduction reduced memory impact of collecting metadata and therefore is more scalable in terms of numbers of variables and writers than BP4. +- Uses Blosc-2 instead of Blosc for lossless compression. The new compression operator is backward compatible with old files compressed with blosc. The name of the operator remains "blosc". +Staging +------- + +- UCX dataplane added for SST staging engine to support networks under the UCX consortium +- MPI dataplane added for SST staging engine. It relies on MPI intercommunicators to connect multiple independent MPI applications for staging purposes. Applications must enable multithreaded MPI for this dataplane. + +Experimental features +--------------------- + +- Preliminary support for data structs. A struct can have single variables of basic types, and 1D fixed size arrays of basic types. Supported by BP5, SST and SSC engines. From 4e640c137be13d6970e10aa001428c58507c5159 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 23 May 2023 05:43:13 +0000 Subject: [PATCH 007/183] Bump requests from 2.28.1 to 2.31.0 in /docs Bumps [requests](https://github.com/psf/requests) from 2.28.1 to 2.31.0. - [Release notes](https://github.com/psf/requests/releases) - [Changelog](https://github.com/psf/requests/blob/main/HISTORY.md) - [Commits](https://github.com/psf/requests/compare/v2.28.1...v2.31.0) --- updated-dependencies: - dependency-name: requests dependency-type: direct:production ... Signed-off-by: dependabot[bot] (cherry picked from commit 8385796eeb6d77805e52379a11bec2f7a3e21f10) --- docs/requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/requirements.txt b/docs/requirements.txt index 542cffd5aa..4e74cf0aab 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -25,7 +25,7 @@ Pygments==2.14.0 pyOpenSSL==23.0.0 PySocks==1.7.1 pytz==2022.7 -requests==2.28.1 +requests==2.31.0 setuptools==65.6.3 snowballstemmer==2.2.0 Sphinx==4.5.0 From be4fcbcf07bf658d76e7bf012ef13adbe51a3cd1 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Mon, 22 May 2023 13:48:55 -0400 Subject: [PATCH 008/183] CI,windows: change MSMPI URL (cherry picked from commit 61073724c148087dbd0e80ff0b291b4e8772b6d6) --- scripts/ci/gh-actions/windows-setup.ps1 | 57 +++++++++++++------------ 1 file changed, 29 insertions(+), 28 deletions(-) diff --git a/scripts/ci/gh-actions/windows-setup.ps1 b/scripts/ci/gh-actions/windows-setup.ps1 index 3f96c7060c..18b9248e58 100644 --- a/scripts/ci/gh-actions/windows-setup.ps1 +++ b/scripts/ci/gh-actions/windows-setup.ps1 @@ -10,38 +10,39 @@ Write-Host "::endgroup::" if($Env:GH_YML_MATRIX_PARALLEL -eq "mpi") { - $rooturl = "https://github.com/microsoft/Microsoft-MPI/releases/download" - $version = "10.1.1" - $baseurl = "$rooturl/v$version" + # This is taken from the MSMPI VCPKG + $baseurl = "https://download.microsoft.com/download/a/5/2/a5207ca5-1203-491a-8fb8-906fd68ae623" + $version = "10.1.12498" - $tempdir = $Env:RUNNER_TEMP - $msmpisdk = Join-Path $tempdir msmpisdk.msi - $msmpisetup = Join-Path $tempdir msmpisetup.exe + $tempdir = $Env:RUNNER_TEMP + $msmpisdk = Join-Path $tempdir msmpisdk.msi + $msmpisetup = Join-Path $tempdir msmpisetup.exe - Write-Host "::group::Downloading Microsoft MPI SDK $version" - Invoke-WebRequest "$baseurl/msmpisdk.msi" -OutFile $msmpisdk - Write-Host "::endgroup::" - Write-Host "::group::Installing Microsoft MPI SDK $version" - Start-Process msiexec.exe -ArgumentList "/quiet /passive /qn /i $msmpisdk" -Wait - Write-Host "::endgroup::" + Write-Host "::group::Downloading Microsoft MPI SDK $version" + Invoke-WebRequest "$baseurl/msmpisdk.msi" -OutFile $msmpisdk + Write-Host "::endgroup::" + Write-Host "::group::Installing Microsoft MPI SDK $version" + Start-Process msiexec.exe -ArgumentList "/quiet /passive /qn /i $msmpisdk" -Wait + Write-Host "::endgroup::" - Write-Host "::group::Downloading Microsoft MPI Runtime $version" - Invoke-WebRequest "$baseurl/msmpisetup.exe" -OutFile $msmpisetup - Write-Host "::endgroup::" - Write-Host "::group::Installing Microsoft MPI Runtime $version" - Start-Process $msmpisetup -ArgumentList "-unattend" -Wait - Write-Host "::endgroup::" + Write-Host "::group::Downloading Microsoft MPI Runtime $version" - if ($Env:GITHUB_ENV) { - Write-Host '::group::Adding environment variables to $GITHUB_ENV' - $envlist = @("MSMPI_BIN", "MSMPI_INC", "MSMPI_LIB32", "MSMPI_LIB64") - foreach ($name in $envlist) { - $value = [Environment]::GetEnvironmentVariable($name, "Machine") - Write-Host "$name=$value" - Add-Content $Env:GITHUB_ENV "$name=$value" - } - Write-Host "::endgroup::" - } + Invoke-WebRequest "$baseurl/msmpisetup.exe" -OutFile $msmpisetup + Write-Host "::endgroup::" + Write-Host "::group::Installing Microsoft MPI Runtime $version" + Start-Process $msmpisetup -ArgumentList "-unattend" -Wait + Write-Host "::endgroup::" + + if ($Env:GITHUB_ENV) { + Write-Host '::group::Adding environment variables to $GITHUB_ENV' + $envlist = @("MSMPI_BIN", "MSMPI_INC", "MSMPI_LIB32", "MSMPI_LIB64") + foreach ($name in $envlist) { + $value = [Environment]::GetEnvironmentVariable($name, "Machine") + Write-Host "$name=$value" + Add-Content $Env:GITHUB_ENV "$name=$value" + } + Write-Host "::endgroup::" + } if ($Env:GITHUB_PATH) { Write-Host '::group::Adding $MSMPI_BIN to $GITHUB_PATH' From bc048048cb6745b7716ef04ce7493a512c1ff822 Mon Sep 17 00:00:00 2001 From: Junmin Gu Date: Fri, 26 May 2023 11:43:25 -0700 Subject: [PATCH 009/183] fixed https://github.com/ornladios/ADIOS2/issues/3638 (cherry picked from commit 59c589e912172bdb2d5867b7a256258b9fd00dbd) --- source/h5vol/H5VolUtil.c | 6 +++--- source/h5vol/H5VolUtil.h | 4 ++-- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/source/h5vol/H5VolUtil.c b/source/h5vol/H5VolUtil.c index 6f44a18c70..80f463eaaf 100644 --- a/source/h5vol/H5VolUtil.c +++ b/source/h5vol/H5VolUtil.c @@ -56,16 +56,16 @@ void *safe_ralloc(void *ptr, size_t newsize, unsigned long line) return p; } -void gUtilConvert(hsize_t *fromH5, size_t *to, uint ndims) +void gUtilConvert(hsize_t *fromH5, size_t *to, size_t ndims) { - uint i = 0; + size_t i = 0; for (i = 0; i < ndims; i++) { to[i] = fromH5[i]; } } -int gUtilADIOS2GetShape(hid_t space_id, size_t *shape, uint ndims) +int gUtilADIOS2GetShape(hid_t space_id, size_t *shape, size_t ndims) { if (gUtilADIOS2IsScalar(space_id)) { diff --git a/source/h5vol/H5VolUtil.h b/source/h5vol/H5VolUtil.h index 305e6ab695..4797bd36f9 100644 --- a/source/h5vol/H5VolUtil.h +++ b/source/h5vol/H5VolUtil.h @@ -37,9 +37,9 @@ int gUtilADIOS2GetDim(hid_t space_id); // h5 uses hsize_t for dimensions (unsigned long long) // adios uses size_t // -void gUtilConvert(hsize_t *fromH5, size_t *to, uint ndims); +void gUtilConvert(hsize_t *fromH5, size_t *to, size_t ndims); -int gUtilADIOS2GetShape(hid_t space_id, size_t *shape, uint ndims); +int gUtilADIOS2GetShape(hid_t space_id, size_t *shape, size_t ndims); int gUtilADIOS2GetBlockInfo(hid_t hyperSlab_id, size_t *start, size_t *count, hsize_t ndims); From c55cf751bf7e81f4f7d7e704a27935079b5b699b Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Mon, 29 May 2023 18:49:58 -0400 Subject: [PATCH 010/183] crusher,ci: set unique env per pipeline (cherry picked from commit 583a507fbc6e69ae3df3716065ea9f5e42adda7e) --- .gitlab/gitlab-ci-crusher.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.gitlab/gitlab-ci-crusher.yml b/.gitlab/gitlab-ci-crusher.yml index a78a3db90d..3e07a59794 100644 --- a/.gitlab/gitlab-ci-crusher.yml +++ b/.gitlab/gitlab-ci-crusher.yml @@ -168,7 +168,7 @@ build:crusher-cray: "https://api.github.com/repos/${STATUS_PROJECT}/statuses/${CI_ORIGINAL_SHA}" -d "{\"state\":\"${CI_JOB_NAME}\", \"context\":\"${STATUS_NAME}\",\"target_url\":\"${CI_PIPELINE_URL}\",\"description\":\"${STATUS_DESC}\"}" environment: - name: reporting-github + name: report-$DOWNSTREAM_COMMIT_SHA pending: stage: pre From 32eb32b8f764d0a99566386047f8202f042da619 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Thu, 8 Jun 2023 06:59:43 -0400 Subject: [PATCH 011/183] Allow Span in files opened for Append --- source/adios2/core/Engine.tcc | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/source/adios2/core/Engine.tcc b/source/adios2/core/Engine.tcc index c8df4013aa..19c80601a5 100644 --- a/source/adios2/core/Engine.tcc +++ b/source/adios2/core/Engine.tcc @@ -27,8 +27,9 @@ template typename Variable::Span &Engine::Put(Variable &variable, const bool initialize, const T &value) { - CheckOpenModes({{Mode::Write}}, " for variable " + variable.m_Name + - ", in call to Variable::Span Put"); + CheckOpenModes({{Mode::Write, Mode::Append}}, + " for variable " + variable.m_Name + + ", in call to Variable::Span Put"); if (!variable.m_Operations.empty()) { helper::Throw( From 6d86d0f3dd1083dbc07f9a1ec98e184056754c34 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Thu, 22 Jun 2023 16:29:19 -0400 Subject: [PATCH 012/183] ci,ascent: disable install tests --- scripts/ci/cmake-v2/ci-ascent-common.cmake | 6 ++++++ scripts/ci/cmake-v2/ci-ascent-cuda.cmake | 5 +---- scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake | 5 +---- scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake | 5 +---- scripts/ci/cmake-v2/ci-ascent-xl.cmake | 2 +- 5 files changed, 10 insertions(+), 13 deletions(-) create mode 100644 scripts/ci/cmake-v2/ci-ascent-common.cmake diff --git a/scripts/ci/cmake-v2/ci-ascent-common.cmake b/scripts/ci/cmake-v2/ci-ascent-common.cmake new file mode 100644 index 0000000000..34b17c8634 --- /dev/null +++ b/scripts/ci/cmake-v2/ci-ascent-common.cmake @@ -0,0 +1,6 @@ +# Client maintainer: vicente.bolea@kitware.com + +set(CTEST_TEST_ARGS + PARALLEL_LEVEL 8 + EXCLUDE ".*/BPWRCUDA.ADIOS2BPCUDAWrong/.*BP4.Serial|.*/BPWRCUDA.ADIOS2BPCUDAMemSel/.*BP4.Serial|Engine.Staging.TestThreads.*|Install.*" + ) diff --git a/scripts/ci/cmake-v2/ci-ascent-cuda.cmake b/scripts/ci/cmake-v2/ci-ascent-cuda.cmake index 93febd6614..886c89926b 100644 --- a/scripts/ci/cmake-v2/ci-ascent-cuda.cmake +++ b/scripts/ci/cmake-v2/ci-ascent-cuda.cmake @@ -18,10 +18,7 @@ CMAKE_DISABLE_FIND_PACKAGE_FLEX=ON CMAKE_Fortran_FLAGS:STRING=-Wall ") -set(CTEST_TEST_ARGS - PARALLEL_LEVEL 8 - EXCLUDE ".*/BPWRCUDA.ADIOS2BPCUDAWrong/.*BP4.Serial|.*/BPWRCUDA.ADIOS2BPCUDAMemSel/.*BP4.Serial" - ) set(CTEST_CMAKE_GENERATOR "Ninja") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-ascent-common.cmake) include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake b/scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake index b906bed2e6..558c7f9a1d 100644 --- a/scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake +++ b/scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake @@ -23,10 +23,7 @@ CMAKE_DISABLE_FIND_PACKAGE_BISON=ON CMAKE_DISABLE_FIND_PACKAGE_FLEX=ON ") -set(CTEST_TEST_ARGS - PARALLEL_LEVEL 8 - EXCLUDE ".*/BPWRCUDA.ADIOS2BPCUDAWrong/.*BP4.Serial|.*/BPWRCUDA.ADIOS2BPCUDAMemSel/.*BP4.Serial|Engine.Staging.TestThreads.*" - ) set(CTEST_CMAKE_GENERATOR "Ninja") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-ascent-common.cmake) include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake b/scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake index c6aa75d3b9..6c2b9cf1f6 100644 --- a/scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake +++ b/scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake @@ -21,10 +21,7 @@ CMAKE_DISABLE_FIND_PACKAGE_FLEX=ON CMAKE_NINJA_FORCE_RESPONSE_FILE=OFF ") -set(CTEST_TEST_ARGS - PARALLEL_LEVEL 8 - EXCLUDE ".*/BPWRCUDA.ADIOS2BPCUDAWrong/.*BP4.Serial|.*/BPWRCUDA.ADIOS2BPCUDAMemSel/.*BP4.Serial|Install.*Fortran" - ) set(CTEST_CMAKE_GENERATOR "Unix Makefiles") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-ascent-common.cmake) include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-ascent-xl.cmake b/scripts/ci/cmake-v2/ci-ascent-xl.cmake index 9f73bab0de..2e974086b9 100644 --- a/scripts/ci/cmake-v2/ci-ascent-xl.cmake +++ b/scripts/ci/cmake-v2/ci-ascent-xl.cmake @@ -24,7 +24,7 @@ CMAKE_DISABLE_FIND_PACKAGE_FLEX=ON ") set(NCPUS 4) -set(CTEST_TEST_ARGS PARALLEL_LEVEL 8) set(CTEST_CMAKE_GENERATOR "Ninja") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-ascent-common.cmake) include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) From b395e8fc96debdcb298dde46b0e4cbfe9139f532 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Fri, 30 Jun 2023 19:10:38 -0400 Subject: [PATCH 013/183] ci: find branchs in chrono order --- .gitlab/config/generate_pipelines.py | 94 ++++++++++++++++------------ 1 file changed, 53 insertions(+), 41 deletions(-) diff --git a/.gitlab/config/generate_pipelines.py b/.gitlab/config/generate_pipelines.py index 17b8068b99..15a70cfde3 100755 --- a/.gitlab/config/generate_pipelines.py +++ b/.gitlab/config/generate_pipelines.py @@ -5,11 +5,11 @@ # # generate_pipeline.py # -# Created: May 19, 2023 # Author: Vicente Adolfo Bolea Sanchez from datetime import datetime import argparse +import itertools import requests import time import re @@ -18,18 +18,43 @@ urllib3.disable_warnings(urllib3.exceptions.InsecureRequestWarning) -def is_date_after(date, days): - deadline_sec = int(time.time()) - (days * 86400) - utc_dt = datetime.strptime(date, '%Y-%m-%dT%H:%M:%SZ') - timestamp_sec = (utc_dt - datetime(1970, 1, 1)).total_seconds() - return timestamp_sec > deadline_sec - - -def request_dict(url): +def request_as_dict(url): r = requests.get(url + '?per_page=100', verify=False) return r.json() +def add_timestamp(branch): + date_str = branch['commit']['committed_date'] + # We ignore the TZ since Gitlab/GitHub always reports in UTC + branch['dt'] = int( + datetime.strptime(date_str.split(".")[0], + '%Y-%m-%dT%H:%M:%S').timestamp()) + return branch + + +def is_recent(branch): + deadline_sec = int(time.time()) - (args.days * 86400) + return branch['dt'] > deadline_sec + + +def has_no_status(branch): + gh_commit_sha = branch['commit']['id'] + # Backported branches use the merge head + if re.fullmatch(r'^pr\d+_.*$', branch['name']): + gh_commit_sha = branch['commit']['parent_ids'][1] + + # Query GitHub for the status of this commit + commit = request_as_dict(gh_url + '/commits/' + gh_commit_sha + '/status') + if commit is None or 'sha' not in commit: + return False + + for status in commit['statuses']: + if status['context'] == args.gh_context: + return False + + return True + + parser = argparse.ArgumentParser( prog='generate_pipeline.py', description='Generate Dynamic pipelines for Gitlab') @@ -39,12 +64,12 @@ def request_dict(url): parser.add_argument( '-n', '--gh-name', required=True, help='Full name of the GitHub project. Ex: ornladios/ADIOS2') -parser.add_argument( - '-c', '--gh-context', default='OLCF Crusher (Frontier)', - help='Name of the status in GitHub (A.K.A context)') parser.add_argument( '-p', '--project_id', required=True, help='Gitlab internal project ID of the project.') +parser.add_argument( + '-c', '--gh-context', default='OLCF Crusher (Frontier)', + help='Name of the status in GitHub (A.K.A context)') parser.add_argument( '-d', '--days', type=int, default=1, help='How many days back to search for commits') @@ -57,34 +82,21 @@ def request_dict(url): args = parser.parse_args() -with open(args.template_file, "r") as fd: +gl_url = args.gl_url + '/api/v4/projects/' + str(args.project_id) +gh_url = 'https://api.github.com/repos/' + args.gh_name + +with open(args.template_file, 'r') as fd: template_str = fd.read() - gl_url = args.gl_url + "/api/v4/projects/" + str(args.project_id) - gh_url = 'https://api.github.com/repos/' + args.gh_name - branches = request_dict(gl_url + "/repository/branches") - num_pipeline = 0 + + branches = request_as_dict(gl_url + '/repository/branches') + branches = map(add_timestamp, branches) + branches = filter(is_recent, branches) + branches = filter(has_no_status, branches) + + # Select the arg.max most least recent branches + branches = sorted(branches, key=lambda x: x['dt']) + branches = itertools.islice(branches, args.max) + for branch in branches: - # Convert to ISO 8601 date format. - date_stamp = branch['commit']['committed_date'].split('.')[0] + "Z" - if num_pipeline < args.max and is_date_after(date_stamp, args.days): - commit_sha = branch['commit']['id'] - # Backported branches use the merge head - gh_commit_sha = commit_sha - if re.fullmatch(r'^pr\d+_.*$', branch['name']): - gh_commit_sha = branch['commit']['parent_ids'][1] - - # Quit if GitHub does not have the commit - if 'sha' not in request_dict(gh_url + "/commits/" + gh_commit_sha): - continue - - # Query GitHub for the status of this commit - commit = request_dict(gh_url + "/commits/" + - gh_commit_sha + "/status") - status_found = False - for status in commit['statuses']: - if status['context'] == args.gh_context: - status_found = True - if not status_found: - num_pipeline += 1 - print(template_str.format( - branch=branch['name'], commit=commit_sha)) + print(template_str.format( + branch=branch['name'], commit=branch['commit']['id'])) From 6277f9732080b40db4f443141069851231cacbd4 Mon Sep 17 00:00:00 2001 From: Axel Huebl Date: Fri, 30 Jun 2023 17:37:38 -0700 Subject: [PATCH 014/183] Fix: std::min w/ windows.h in C-Blosc2 Explictly specialize to avoid macro resolution when windows.h is included. What a world to live in. --- source/adios2/operator/compress/CompressBlosc.cpp | 8 ++++---- .../bpBackCompatOperation/compress/BPBackCompatBlosc.cpp | 4 ++-- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/source/adios2/operator/compress/CompressBlosc.cpp b/source/adios2/operator/compress/CompressBlosc.cpp index 5b243ccdcf..9f20c51783 100644 --- a/source/adios2/operator/compress/CompressBlosc.cpp +++ b/source/adios2/operator/compress/CompressBlosc.cpp @@ -181,8 +181,8 @@ size_t CompressBlosc::Operate(const char *dataIn, const Dims &blockStart, for (; inputOffset < sizeIn; ++chunk) { size_t inputChunkSize = - std::min(sizeIn - inputOffset, - static_cast(BLOSC2_MAX_BUFFERSIZE)); + std::min(sizeIn - inputOffset, + static_cast(BLOSC2_MAX_BUFFERSIZE)); bloscSize_t maxIntputSize = static_cast(inputChunkSize); @@ -375,8 +375,8 @@ size_t CompressBlosc::DecompressChunkedFormat(const char *bufferIn, char *out_ptr = dataOut + currentOutputSize; size_t outputChunkSize = - std::min(uncompressedSize - currentOutputSize, - static_cast(BLOSC2_MAX_BUFFERSIZE)); + std::min(uncompressedSize - currentOutputSize, + static_cast(BLOSC2_MAX_BUFFERSIZE)); bloscSize_t max_output_size = static_cast(outputChunkSize); diff --git a/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.cpp b/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.cpp index ccdb0c4515..50ad2af857 100644 --- a/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.cpp +++ b/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.cpp @@ -142,8 +142,8 @@ size_t BPBackCompatBlosc::DecompressChunkedFormat(const void *bufferIn, uint8_t *out_ptr = outputBuff + currentOutputSize; size_t outputChunkSize = - std::min(uncompressedSize - currentOutputSize, - static_cast(BLOSC2_MAX_BUFFERSIZE)); + std::min(uncompressedSize - currentOutputSize, + static_cast(BLOSC2_MAX_BUFFERSIZE)); bloscSize_t max_output_size = static_cast(outputChunkSize); From e0f9dc0e9a5ea683ac44b57e08ce94f6a4990e4b Mon Sep 17 00:00:00 2001 From: enet Upstream Date: Thu, 8 Jun 2023 19:56:59 -0400 Subject: [PATCH 015/183] enet 2023-06-08 (f93beb4e) Code extracted from: https://github.com/GTkorvo/enet.git at commit f93beb4e7d8179e2b38a88a40b595649f2405913 (master). Upstream Shortlog ----------------- --- CMakeLists.txt | 19 +++++++++++++++++++ ChangeLog | 21 +++++++++++++++++++++ LICENSE | 2 +- README | 2 +- include/enet/enet.h | 3 ++- unix.c | 13 +++++++++++-- win32.c | 14 ++++++++++++-- 7 files changed, 67 insertions(+), 7 deletions(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index b9b78e6a1d..bd32600586 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -42,6 +42,24 @@ if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES) set_property(CACHE CMAKE_BUILD_TYPE PROPERTY VALUE RelWithDebInfo) endif() +if(WIN32) + # Automagic to do the DLL / LIB song and dance + set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS TRUE) + + # Silence MSVC warnings + if(CMAKE_C_COMPILER_ID MATCHES "MSVC" OR + CMAKE_C_SIMULATE_ID MATCHES "MSVC") + add_definitions( + -D_CRT_SECURE_NO_DEPRECATE + -D_CRT_SECURE_NO_WARNINGS + -D_SCL_SECURE_NO_DEPRECATE + -D_WINSOCK_DEPRECATED_NO_WARNINGS + -D_CRT_NONSTDC_NO_DEPRECATE + -DENET_SRC) + set (MSVC_PERL_FLAGS "-msvc-long") + endif() +endif() + include(CMakeDependentOption) # Setup shared library defaults. If explicitly specified somehow, then default @@ -111,6 +129,7 @@ if(UNIX) target_sources(enet PRIVATE unix.c) elseif(WIN32) target_sources(enet PRIVATE win32.c) + target_link_libraries(enet wsock32 ws2_32 winmm) endif() target_include_directories(enet PUBLIC $ diff --git a/ChangeLog b/ChangeLog index 663c7b731c..e182076425 100644 --- a/ChangeLog +++ b/ChangeLog @@ -1,4 +1,25 @@ +ENet 1.3.17 (November 15, 2020): + +* fixes for sender getting too far ahead of receiver that can cause instability with reliable packets + +ENet 1.3.16 (September 8, 2020): + +* fix bug in unreliable fragment queuing +* use single output queue for reliable and unreliable packets for saner ordering +* revert experimental throttle changes that were less stable than prior algorithm + +ENet 1.3.15 (April 20, 2020): + +* quicker RTT initialization +* use fractional precision for RTT calculations +* fixes for packet throttle with low RTT variance +* miscellaneous socket bug fixes + +ENet 1.3.14 (January 27, 2019): + +* bug fix for enet_peer_disconnect_later() * use getaddrinfo and getnameinfo where available +* miscellaneous cleanups ENet 1.3.13 (April 30, 2015): diff --git a/LICENSE b/LICENSE index 39af84a8f6..6906f8eb0b 100644 --- a/LICENSE +++ b/LICENSE @@ -1,4 +1,4 @@ -Copyright (c) 2002-2016 Lee Salzman +Copyright (c) 2002-2020 Lee Salzman Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions: diff --git a/README b/README index 54b2d21304..3b6318b22a 100644 --- a/README +++ b/README @@ -1,4 +1,4 @@ -Please visit the ENet homepage at http://enet.bespin.org for installation +Please visit the ENet homepage at http://sauerbraten.org/enet/ for installation and usage instructions. If you obtained this package from github, the quick description on how to build diff --git a/include/enet/enet.h b/include/enet/enet.h index f44ddae9d7..04059b7b5d 100644 --- a/include/enet/enet.h +++ b/include/enet/enet.h @@ -62,7 +62,8 @@ typedef enum _ENetSocketOption ENET_SOCKOPT_RCVTIMEO = 6, ENET_SOCKOPT_SNDTIMEO = 7, ENET_SOCKOPT_ERROR = 8, - ENET_SOCKOPT_NODELAY = 9 + ENET_SOCKOPT_NODELAY = 9, + ENET_SOCKOPT_TTL = 10 } ENetSocketOption; typedef enum _ENetSocketShutdown diff --git a/unix.c b/unix.c index c36a082a89..b54b627dba 100644 --- a/unix.c +++ b/unix.c @@ -149,7 +149,7 @@ enet_address_set_host (ENetAddress * address, const char * name) char buffer [2048]; int errnum; -#if defined(linux) || defined(__linux) || defined(__linux__) || defined(__FreeBSD__) || defined(__FreeBSD_kernel__) || defined(__DragonFly__) +#if defined(linux) || defined(__linux) || defined(__linux__) || defined(__FreeBSD__) || defined(__FreeBSD_kernel__) || defined(__DragonFly__) || defined(__GNU__) gethostbyname_r (name, & hostData, buffer, sizeof (buffer), & hostEntry, & errnum); #else hostEntry = gethostbyname_r (name, & hostData, buffer, sizeof (buffer), & errnum); @@ -221,7 +221,7 @@ enet_address_get_host (const ENetAddress * address, char * name, size_t nameLeng in.s_addr = address -> host; -#if defined(linux) || defined(__linux) || defined(__linux__) || defined(__FreeBSD__) || defined(__FreeBSD_kernel__) || defined(__DragonFly__) +#if defined(linux) || defined(__linux) || defined(__linux__) || defined(__FreeBSD__) || defined(__FreeBSD_kernel__) || defined(__DragonFly__) || defined(__GNU__) gethostbyaddr_r ((char *) & in, sizeof (struct in_addr), AF_INET, & hostData, buffer, sizeof (buffer), & hostEntry, & errnum); #else hostEntry = gethostbyaddr_r ((char *) & in, sizeof (struct in_addr), AF_INET, & hostData, buffer, sizeof (buffer), & errnum); @@ -349,6 +349,10 @@ enet_socket_set_option (ENetSocket socket, ENetSocketOption option, int value) result = setsockopt (socket, IPPROTO_TCP, TCP_NODELAY, (char *) & value, sizeof (int)); break; + case ENET_SOCKOPT_TTL: + result = setsockopt (socket, IPPROTO_IP, IP_TTL, (char *) & value, sizeof (int)); + break; + default: break; } @@ -367,6 +371,11 @@ enet_socket_get_option (ENetSocket socket, ENetSocketOption option, int * value) result = getsockopt (socket, SOL_SOCKET, SO_ERROR, value, & len); break; + case ENET_SOCKOPT_TTL: + len = sizeof (int); + result = getsockopt (socket, IPPROTO_IP, IP_TTL, (char *) value, & len); + break; + default: break; } diff --git a/win32.c b/win32.c index 81175a4113..0953466a3d 100644 --- a/win32.c +++ b/win32.c @@ -8,6 +8,7 @@ #include "enet/enet.h" #include #include +#include static enet_uint32 timeBase = 0; @@ -231,6 +232,10 @@ enet_socket_set_option (ENetSocket socket, ENetSocketOption option, int value) result = setsockopt (socket, IPPROTO_TCP, TCP_NODELAY, (char *) & value, sizeof (int)); break; + case ENET_SOCKOPT_TTL: + result = setsockopt (socket, IPPROTO_IP, IP_TTL, (char *) & value, sizeof (int)); + break; + default: break; } @@ -248,6 +253,11 @@ enet_socket_get_option (ENetSocket socket, ENetSocketOption option, int * value) result = getsockopt (socket, SOL_SOCKET, SO_ERROR, (char *) value, & len); break; + case ENET_SOCKOPT_TTL: + len = sizeof(int); + result = getsockopt (socket, IPPROTO_IP, IP_TTL, (char *) value, & len); + break; + default: break; } @@ -316,7 +326,7 @@ enet_socket_send (ENetSocket socket, size_t bufferCount) { struct sockaddr_in sin; - DWORD sentLength; + DWORD sentLength = 0; if (address != NULL) { @@ -354,7 +364,7 @@ enet_socket_receive (ENetSocket socket, { INT sinLength = sizeof (struct sockaddr_in); DWORD flags = 0, - recvLength; + recvLength = 0; struct sockaddr_in sin; if (WSARecvFrom (socket, From 298e38ad658a1daaf617832f919aaa7c5213b88a Mon Sep 17 00:00:00 2001 From: EVPath Upstream Date: Sat, 10 Jun 2023 07:19:53 -0400 Subject: [PATCH 016/183] EVPath 2023-06-10 (e9be8e63) Code extracted from: https://github.com/GTkorvo/EVPath.git at commit e9be8e635f0e2b578f88957b999601b1fc74dde0 (master). Upstream Shortlog ----------------- --- CMakeLists.txt | 30 +++- chr_time.c | 47 ++++- cm.c | 285 +++++++++++++++-------------- cm_control.c | 8 +- cm_evol.c | 2 +- cm_formats.c | 2 + cm_internal.h | 77 ++++++-- cm_lock.c | 8 +- cm_pbio.c | 8 +- cm_perf.c | 18 +- cm_schedule.h | 3 + cm_threadio.c | 10 +- cm_transport.c | 21 +-- cm_transport.h | 25 ++- cm_util.c | 35 ++-- cmenet.c | 318 +++++++++++++++++++++++++++++---- cmepoll.c | 2 +- cmib.c | 2 +- cmmulticast.c | 63 +++---- cmprobe.c | 7 +- cmselect.c | 197 ++++++++------------ cmsockets.c | 211 +++++++++------------- cmudp.c | 125 +++++-------- config.h.cmake | 4 +- dfg_tests/anon_multi_test.c | 9 + dfg_tests/auto_tree_test.c | 18 +- dfg_tests/delayed_submit.c | 31 +++- dfg_tests/fail_chain_test.c | 20 ++- dfg_tests/metrics_test.c | 4 +- dfg_tests/multi_test.c | 4 +- dfg_tests/router_test.c | 7 + dfg_tests/self_reconfig_test.c | 20 ++- dfg_tests/test_support.c | 12 +- dfg_tests/test_support.h | 4 + dfg_tests/tree_test.c | 18 +- dlloader.c | 77 +++++++- dlloader.h | 9 + ev_dfg.c | 295 +++++++++++++++--------------- ev_internal.h | 8 +- evp.c | 66 +++---- evp_threads.c | 4 +- evpath.h | 12 +- examples/derived_recv.c | 2 +- examples/transform_recv.c | 2 +- examples/transform_recv2.c | 4 +- examples/transform_recv3.c | 4 +- gen_interface.pl | 17 +- ip_config.c | 48 +++-- metrics.c | 97 ++++++---- mtests/bulktest.c | 8 +- mtests/cmconn.c | 13 +- mtests/cmping.c | 11 +- mtests/cmtest.c | 11 +- mtests/support.c | 12 +- mtests/take_test.c | 14 +- mtests/trans_test.c | 49 +++-- qual_hostname.c | 6 +- response.c | 80 +++++---- response.h | 2 +- rtests/evtest.c | 8 +- rtests/extract_test.c | 7 +- rtests/remote_terminal_test.c | 7 +- tests/auto_test.c | 3 +- tests/bulktest.c | 71 ++++---- tests/evtest.c | 7 +- tests/executing_stone_test.c | 10 ++ tests/extract_test.c | 3 +- tests/filter2_test.c | 3 +- tests/filter_test.c | 7 +- tests/http_test.c | 3 +- tests/multi_thread.c | 2 + tests/multiq_test.c | 3 +- tests/no_type_router_test.c | 3 +- tests/rawtest.c | 7 +- tests/rawtest2.c | 5 +- tests/router_test.c | 3 +- tests/router_test2.c | 3 +- tests/split_test.c | 23 +-- tests/submit_test.c | 3 +- tests/support.c | 20 ++- tests/take_test.c | 2 +- tests/testdll/foo.c | 7 +- tests/thin_client.c | 24 ++- tests/thin_test.c | 3 + tests/transform_test.c | 9 +- thin_server.c | 28 ++- 86 files changed, 1728 insertions(+), 1052 deletions(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index b5f8111c06..532494d68e 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -74,6 +74,23 @@ if(NOT MSVC) set(CMAKE_C_STANDARD_REQUIRED True) endif() +if(WIN32) + # Automagic to do the DLL / LIB song and dance + set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS TRUE) + + # Silence MSVC warnings + if(CMAKE_C_COMPILER_ID MATCHES "MSVC" OR + CMAKE_C_SIMULATE_ID MATCHES "MSVC") + add_definitions( + -D_CRT_SECURE_NO_DEPRECATE + -D_CRT_SECURE_NO_WARNINGS + -D_SCL_SECURE_NO_DEPRECATE + -D_WINSOCK_DEPRECATED_NO_WARNINGS + -D_CRT_NONSTDC_NO_DEPRECATE) + set (MSVC_PERL_FLAGS "-msvc-long") + endif() +endif() + set(CPACK_DEBIAN_PACKAGE_DEPENDS "dill, atl, ffs") set(CPACK_RPM_PACKAGE_REQUIRES "dill, atl, ffs") set(ENABLE_SOMETHING AUTO CACHE STRING "Enable SOMETHING support") # @@ -201,7 +218,7 @@ cmake_dependent_option(EVPATH_TRANSPORT_MODULES list(INSERT CMAKE_PREFIX_PATH 0 ${CMAKE_INSTALL_PREFIX}) find_package(atl 2.2.1 REQUIRED) -find_package(ffs 2.0.0 REQUIRED) +find_package(ffs 3.0.0 REQUIRED) _pkg_get_target_prefix(atl::atl atl_PREFIX) _pkg_get_target_prefix(ffs::ffs ffs_PREFIX) list(APPEND _pkg_config_pfxs "${atl_PREFIX}" "${ffs_PREFIX}") @@ -214,7 +231,7 @@ else() unset(CMAKE_REQUIRED_LIBRARIES) endif() if (HAVE_COD_H) - find_package(dill 2.3.1 REQUIRED) + find_package(dill 3.0.0 REQUIRED) target_link_libraries(EVPath PUBLIC atl::atl ffs::ffs PRIVATE dill::dill) _pkg_get_target_prefix(dill::dill dill_PREFIX) list(APPEND _pkg_config_private_reqs "dill >= ${dill_VERSION}") @@ -354,6 +371,9 @@ else() message(STATUS " - Enet library was not found. This is not a fatal error, just that the Enet transport will not be built.") endif() +if (MSVC) + set(EVPATH_USE_ZPL_ENET FALSE) +endif() if(NOT (DEFINED EVPATH_USE_ZPL_ENET)) option(EVPATH_USE_ZPL_ENET "Build the enet transport" "ON") endif() @@ -486,6 +506,10 @@ if(IBVERBS_FOUND) endif() endif() + if(WIN32) + target_link_libraries(EVPath wsock32 ws2_32) + endif() + if(EVPATH_TRANSPORT_MODULES) add_library(cmib MODULE cmib.c) set_target_properties(cmib PROPERTIES @@ -593,7 +617,7 @@ CHECK_INCLUDE_FILE(sys/uio.h HAVE_SYS_UIO_H) CHECK_INCLUDE_FILE(sys/un.h HAVE_SYS_UN_H) CHECK_INCLUDE_FILE(unistd.h HAVE_UNISTD_H) CHECK_INCLUDE_FILE(windows.h HAVE_WINDOWS_H) -CHECK_INCLUDE_FILE(winsock.h HAVE_WINSOCK_H) +CHECK_INCLUDE_FILE(winsock2.h HAVE_WINSOCK2_H) CHECK_STRUCT_HAS_MEMBER("struct fd_set" "fds_bits" "sys/select.h" HAVE_FDS_BITS) diff --git a/chr_time.c b/chr_time.c index 5daa4e6409..0cbd146b6d 100644 --- a/chr_time.c +++ b/chr_time.c @@ -2,12 +2,30 @@ #include "stdlib.h" #include "chr_time.h" +#ifdef HAVE_SYS_TIME_H #include +#endif +#ifdef _MSC_VER +#include +#include +#include +#endif extern void chr_get_time( chr_time *time) { - gettimeofday((struct timeval *) time, NULL); +#ifdef HAVE_GETTIMEOFDAY + gettimeofday((struct timeval*)time, NULL); +#else + /* GSE... No gettimeofday on windows. + * Must use _ftime, get millisec time, convert to usec. Bleh. + */ + struct _timeb nowb; + _ftime(&nowb); + ((struct timeval*)time)->tv_sec = (long)nowb.time; + ((struct timeval*)time)->tv_usec = nowb.millitm * 1000; +#endif + // gettimeofday((struct timeval *) time, NULL); } extern void @@ -22,7 +40,18 @@ chr_timer_stop( chr_time *time) struct timeval now; struct timeval duration; - gettimeofday(&now, NULL); +#ifndef HAVE_WINDOWS_H + gettimeofday((struct timeval*)&now, NULL); +#else + /* GSE... No gettimeofday on windows. + * Must use _ftime, get millisec time, convert to usec. Bleh. + */ + struct _timeb nowb; + _ftime(&nowb); + ((struct timeval*)&now)->tv_sec = (long)nowb.time; + ((struct timeval*)&now)->tv_usec = nowb.millitm * 1000; +#endif +// gettimeofday(&now, NULL); chr_timer_diff((chr_time*)&duration, (chr_time*)&now, time); *((struct timeval *) time) = duration; } @@ -96,12 +125,24 @@ chr_time_to_nanosecs(chr_time *time) extern double chr_approx_resolution() { - struct timeval start, stop, diff; + struct timeval diff; +#ifndef HAVE_WINDOWS_H + struct timeval start, stop; gettimeofday(&start, NULL); gettimeofday(&stop, NULL); while(start.tv_usec == stop.tv_usec) { gettimeofday(&stop, NULL); } chr_timer_diff((chr_time*)&diff, (chr_time*)&stop, (chr_time*)&start); +#else + struct _timeb start, stop; + _ftime(&start); + _ftime(&stop); + while (start.millitm == stop.millitm) { + _ftime(&stop); + } + diff.tv_sec = 0; + diff.tv_usec = (stop.millitm - start.millitm) * 1000; +#endif return chr_time_to_secs((chr_time*)&diff); } diff --git a/cm.c b/cm.c index 2e50831ca1..9b1d5e45f1 100644 --- a/cm.c +++ b/cm.c @@ -17,13 +17,16 @@ #include #include #ifdef HAVE_WINDOWS_H -#include +#include #define __ANSI_CPP__ #else #include #include #endif +#ifdef HAVE_SYS_TIME_H #include +#endif +#include #include #include #include "evpath.h" @@ -115,7 +118,7 @@ static void INT_CMControlList_close(CMControlList cl, CManager cm); static int CMcontrol_list_poll(CMControlList cl); int CMdo_non_CM_handler(CMConnection conn, int header, char *buffer, size_t length); -void CMdo_performance_response(CMConnection conn, long length, +void CMdo_performance_response(CMConnection conn, size_t length, int func, int byte_swap, char *buffer); @@ -124,11 +127,11 @@ static void CM_init_select(CMControlList cl, CManager cm); static void cond_wait_CM_lock(CManager cm, void *vcond, char *file, int line) { - pthread_cond_t *cond = vcond; + thr_condition_t *cond = vcond; CMtrace_out(cm, CMLowLevelVerbose, "CManager Condition wait at \"%s\" line %d\n", file, line); cm->locked--; - pthread_cond_wait(cond, &cm->exchange_lock); + thr_condition_wait(*cond, cm->exchange_lock); CMtrace_out(cm, CMLowLevelVerbose, "CManager Condition wake at \"%s\" line %d\n", file, line); cm->locked++; @@ -171,7 +174,7 @@ CMpoll_forever(CManager cm) should_exit++; } while(!cl->closed) { - CMtrace_out(cm, CMLowLevelVerbose, "CM Poll Forever - thread %lx doing wait\n", (long)thr_thread_self()); + CMtrace_out(cm, CMLowLevelVerbose, "CM Poll Forever - thread %zx doing wait\n", (size_t)thr_thread_self()); if (CMcontrol_list_wait(cl) == -1) { CMtrace_out(cm, CMLowLevelVerbose, "CM Poll Forever - doing close and exit\n"); /* @@ -210,7 +213,7 @@ INT_CMrun_network(CManager cm) /* What? We're polling, but we're not the server thread? */ fprintf(stderr, "Warning: CMrun_network() called when another thread may already be handling the network\n"); fprintf(stderr, " This situation may result in unexpected I/O blocking.\n"); - fprintf(stderr, " Server thread set to %lx.\n", (long) thr_thread_self()); + fprintf(stderr, " Server thread set to %zx.\n", (size_t) thr_thread_self()); } cm->control_list->server_thread = thr_thread_self(); cm->control_list->has_thread = 1; @@ -225,14 +228,12 @@ CM_test_thread_func() } static thr_thread_t -thr_fork(func, arg) -void*(*func)(void*); -void *arg; +thr_fork(void*(*func)(void*), void *arg) { - pthread_t new_thread = 0; - int err = pthread_create(&new_thread, NULL, (void*(*)(void*))func, arg); + thr_thread_t new_thread = 0; + int err = thr_thread_create(&new_thread, NULL, (void*(*)(void*))func, arg); if (err != 0) { - return (thr_thread_t) NULL; + return (thr_thread_t) (intptr_t)NULL; } else { return (thr_thread_t) new_thread; } @@ -252,15 +253,15 @@ INT_CMfork_comm_thread(CManager cm) thr_fork((void*(*)(void*))server_thread_func, (void*)cm); CMtrace_out(cm, CMLowLevelVerbose, - "CM - Forked comm thread %lx\n", (long)server_thread); - if (server_thread == (thr_thread_t) NULL) { + "CM - Forked comm thread %p\n", (void*)(intptr_t)server_thread); + if (server_thread == (thr_thread_t)(intptr_t) NULL) { return 0; } cm->control_list->server_thread = server_thread; cm->control_list->has_thread = 1; cm->reference_count++; - CMtrace_out(cm, CMFreeVerbose, "Forked - CManager %lx ref count now %d\n", - (long) cm, cm->reference_count); + CMtrace_out(cm, CMFreeVerbose, "Forked - CManager %p ref count now %d\n", + cm, cm->reference_count); cm->control_list->cl_reference_count++; cm->control_list->free_reference_count++; } else { @@ -271,7 +272,7 @@ INT_CMfork_comm_thread(CManager cm) thr_thread_t test_thread = thr_fork((void*(*)(void*))CM_test_thread_func, (void*)cm); - if (test_thread == (thr_thread_t) NULL) { + if (test_thread == (thr_thread_t)(intptr_t) NULL) { /* No. Say we can't. */ CMtrace_out(cm, CMLowLevelVerbose, "CM - Test fork failed, no comm thread\n"); @@ -540,12 +541,12 @@ CMinternal_listen(CManager cm, attr_list listen_info, int try_others) int success = 0; transport_entry *trans_list; char *chosen_transport = NULL; - char *interface = NULL; + char *iface = NULL; if (listen_info) { listen_info = split_transport_attributes(attr_copy_list(listen_info)); get_string_attr(listen_info, CM_TRANSPORT, &chosen_transport); - get_string_attr(listen_info, CM_IP_INTERFACE, &interface); + get_string_attr(listen_info, CM_IP_INTERFACE, &iface); } if (chosen_transport != NULL) { CMtrace_out(cm, CMConnectionVerbose, @@ -573,8 +574,8 @@ CMinternal_listen(CManager cm, attr_list listen_info, int try_others) attrs = (*trans_list)->listen(cm, &CMstatic_trans_svcs, *trans_list, listen_info); - if (interface) { - add_string_attr(attrs, CM_IP_INTERFACE, strdup(interface)); + if (iface) { + add_string_attr(attrs, CM_IP_INTERFACE, strdup(iface)); } add_contact_list(cm, attrs); if (CMtrace_on(cm, CMConnectionVerbose)) { @@ -697,7 +698,7 @@ CMcontrol_list_wait(CMControlList cl) /* What? We're polling, but we're not the server thread? */ fprintf(stderr, "Warning: Multiple threads calling CMnetwork_wait\n"); fprintf(stderr, " This situation may result in unexpected I/O blocking.\n"); - fprintf(stderr, " Server thread set to %lx.\n", (long) thr_thread_self()); + fprintf(stderr, " Server thread set to %zx.\n", (size_t) thr_thread_self()); } cl->server_thread = thr_thread_self(); if (cl->network_blocking_function.func != NULL) { @@ -721,6 +722,16 @@ INT_CManager_create() return INT_CManager_create_control(NULL); } +static void +atl_mutex_lock(void* lock) +{ + thr_mutex_lock(*((thr_mutex_t*)lock)); +} +static void +atl_mutex_unlock(void* lock) +{ + thr_mutex_unlock(*((thr_mutex_t*)lock)); +} extern CManager INT_CManager_create_control(char *control_module) @@ -731,7 +742,7 @@ INT_CManager_create_control(char *control_module) if (!atl_mutex_initialized) { atl_mutex_initialized++; thr_mutex_init(atl_mutex); - atl_install_mutex_funcs((atl_lock_func)pthread_mutex_lock, (atl_lock_func)pthread_mutex_unlock, + atl_install_mutex_funcs((atl_lock_func)atl_mutex_lock, (atl_lock_func)atl_mutex_unlock, &atl_mutex); } if (cm == NULL) @@ -882,7 +893,7 @@ CManager_free(CManager cm) i=0; while (list != NULL) { CMbuffer next = list->next; - CMtrace_out(cm, CMBufferVerbose, "Final buffer disposition buf %d, %p, size %ld, ref_count %d\n", i++, list, list->size, list->ref_count); + CMtrace_out(cm, CMBufferVerbose, "Final buffer disposition buf %d, %p, size %zd, ref_count %d\n", i++, list, list->size, list->ref_count); if (list->return_callback) { (list->return_callback)(list->return_callback_data); } else { @@ -911,10 +922,10 @@ CManager_free(CManager cm) CMtrace_out(cm, CMFreeVerbose, "CManager %p closing, ref count %d\n", cm, cm->reference_count); - CMtrace_out(cm, CMFreeVerbose, "CMControlList close CL=%lx current reference count will be %d, sdp = %p\n", - (long) cl, cl->cl_reference_count - 1, cl->select_data); + CMtrace_out(cm, CMFreeVerbose, "CMControlList close CL=%p current reference count will be %d, sdp = %p\n", + cl, cl->cl_reference_count - 1, cl->select_data); INT_CMControlList_close(cl, cm); - CMtrace_out(cm, CMFreeVerbose, "CMControlList CL=%lx is closed\n", (long) cl); + CMtrace_out(cm, CMFreeVerbose, "CMControlList CL=%p is closed\n", cl); while (cm->connection_count != 0) { /* connections are moved down as they are closed... */ @@ -930,7 +941,7 @@ CManager_free(CManager cm) while (shutdown_functions[i].func != NULL) { if (shutdown_functions[i].task_type == SHUTDOWN_TASK) { - CMtrace_out(cm, CMFreeVerbose, "CManager calling shutdown function SHUTDOWN %d, %lx\n", i, (long)shutdown_functions[i].func); + CMtrace_out(cm, CMFreeVerbose, "CManager calling shutdown function SHUTDOWN %d, %p\n", i, shutdown_functions[i].func); shutdown_functions[i].func(cm, shutdown_functions[i].client_data); shutdown_functions[i].task_type = NO_TASK; } @@ -952,7 +963,7 @@ CManager_free(CManager cm) i--; for ( ; i >= 0; i--) { if (shutdown_functions[i].task_type == FREE_TASK) { - CMtrace_out(cm, CMFreeVerbose, "CManager calling shutdown function FREE %d, %lx\n", i, (long)shutdown_functions[i].func); + CMtrace_out(cm, CMFreeVerbose, "CManager calling shutdown function FREE %d, %p\n", i, shutdown_functions[i].func); shutdown_functions[i].func(cm, shutdown_functions[i].client_data); shutdown_functions[i].func = NULL; } @@ -1041,7 +1052,7 @@ CManager_free(CManager cm) new_list->select_data = NULL; new_list->add_select = NULL; new_list->remove_select = NULL; - new_list->server_thread = (thr_thread_t) NULL; + new_list->server_thread = (thr_thread_t)(intptr_t) NULL; new_list->network_blocking_function.func = NULL; new_list->network_polling_function.func = NULL; new_list->polling_function_list = NULL; @@ -1116,8 +1127,8 @@ CManager_free(CManager cm) conn->do_non_blocking_write = !blocking_on_conn; } add_conn_to_CM(trans->cm, conn); - CMtrace_out(trans->cm, CMFreeVerbose, "CMConnection_create %lx \n", - (long) conn); + CMtrace_out(trans->cm, CMFreeVerbose, "CMConnection_create %p \n", + conn); return conn; } @@ -1172,19 +1183,19 @@ CManager_free(CManager cm) extern int INT_CMConnection_set_character(CMConnection conn, attr_list attrs) { - long interval_value; + ssize_t interval_value; if (attrs == NULL) return 0; if (get_long_attr(attrs, CM_BW_MEASURE_INTERVAL, &interval_value)) { bw_measure_data data; int previous_interval; CMTaskHandle task = NULL; if ((interval_value <= 1) || (interval_value > 60*60*8)) { - printf("Bad CM_BW_MEASURE_INTERVAL, %ld seconds\n", + printf("Bad CM_BW_MEASURE_INTERVAL, %zd seconds\n", interval_value); return 0; } - CMtrace_out(conn->cm, CMLowLevelVerbose,"CM_BW_MEASURE_INTERVAL set, interval is %ld\n", interval_value); + CMtrace_out(conn->cm, CMLowLevelVerbose,"CM_BW_MEASURE_INTERVAL set, interval is %zd\n", interval_value); if (conn->characteristics && (get_int_attr(conn->characteristics, CM_BW_MEASURE_INTERVAL, &previous_interval) != 0)) { @@ -1195,10 +1206,10 @@ CManager_free(CManager cm) } CMtrace_out(conn->cm, CMLowLevelVerbose,"CM_BW_MEASURE_INTERVAL prior interval is %d, killing prior task.\n", previous_interval); get_long_attr(conn->characteristics, CM_BW_MEASURE_TASK, - (long*)(long)&prior_task); + (ssize_t*)(intptr_t)&prior_task); if (prior_task) { INT_CMremove_task(prior_task); - set_long_attr(conn->characteristics, CM_BW_MEASURE_TASK, (long)0); + set_long_attr(conn->characteristics, CM_BW_MEASURE_TASK, (intptr_t)0); } } data = malloc(sizeof(*data)); @@ -1224,14 +1235,14 @@ CManager_free(CManager cm) (void*)data); free(task); /* schedule tasks periodically */ - task = INT_CMadd_periodic_task(conn->cm, interval_value, 0, + task = INT_CMadd_periodic_task(conn->cm, (int)interval_value, 0, do_bw_measure, (void*)data); if (conn->characteristics == NULL) { conn->characteristics = CMcreate_attr_list(conn->cm); } set_int_attr(conn->characteristics, CM_BW_MEASURE_INTERVAL, - interval_value); - set_long_attr(conn->characteristics, CM_BW_MEASURE_TASK, (long)task); + (int)interval_value); + set_long_attr(conn->characteristics, CM_BW_MEASURE_TASK, (intptr_t)task); return 1; } @@ -1300,15 +1311,15 @@ INT_CMConnection_failed(CMConnection conn) transport_wake_any_pending_write(conn); assert(CManager_locked(conn->cm)); - CMtrace_out(conn->cm, CMFreeVerbose, "CMConnection failed conn=%lx\n", - (long) conn); + CMtrace_out(conn->cm, CMFreeVerbose, "CMConnection failed conn=%p\n", + conn); CMconn_fail_conditions(conn); conn->trans->shutdown_conn(&CMstatic_trans_svcs, conn->transport_data); get_long_attr(conn->characteristics, CM_BW_MEASURE_TASK, - (long*)(long)&prior_task); + (ssize_t*)(intptr_t)&prior_task); if (prior_task) { INT_CMremove_task(prior_task); - set_long_attr(conn->characteristics, CM_BW_MEASURE_TASK, (long)0); + set_long_attr(conn->characteristics, CM_BW_MEASURE_TASK, (intptr_t)0); } if (conn->close_list) { CMCloseHandlerList list = conn->close_list; @@ -1334,8 +1345,8 @@ INT_CMConnection_failed(CMConnection conn) void internal_connection_close(CMConnection conn) { - CMtrace_out(conn->cm, CMFreeVerbose, "internal_connection_close conn=%lx ref count is %d\n", - (long) conn, conn->conn_ref_count); + CMtrace_out(conn->cm, CMFreeVerbose, "internal_connection_close conn=%p ref count is %d\n", + conn, conn->conn_ref_count); conn->closed = 1; } @@ -1343,8 +1354,8 @@ INT_CMConnection_failed(CMConnection conn) INT_CMConnection_close(CMConnection conn) { internal_connection_close(conn); - CMtrace_out(conn->cm, CMFreeVerbose, "User CMConnection close conn=%lx ref count will be %d\n", - (long) conn, conn->conn_ref_count - 1); + CMtrace_out(conn->cm, CMFreeVerbose, "User CMConnection close conn=%p ref count will be %d\n", + conn, conn->conn_ref_count - 1); INT_CMConnection_dereference(conn); } @@ -1402,12 +1413,12 @@ INT_CMConnection_failed(CMConnection conn) { cl->free_reference_count--; if (CMtrace_val[CMFreeVerbose]) { - fprintf(cm->CMTrace_file, "CMControlList_free, %lx, ref count now %d\n", (long)cl, + fprintf(cm->CMTrace_file, "CMControlList_free, %p, ref count now %d\n", cl, cl->free_reference_count); } if(cl->free_reference_count == 0) { if (CMtrace_val[CMFreeVerbose]) { - fprintf(cm->CMTrace_file, "CMControlList_free freeing %lx\n", (long)cl); + fprintf(cm->CMTrace_file, "CMControlList_free freeing %p\n", cl); } if (cl->polling_function_list != NULL) { INT_CMfree(cl->polling_function_list); @@ -1512,7 +1523,7 @@ static void timeout_conn(CManager cm, void *client_data) { - INT_CMCondition_fail(cm, (long) client_data); + INT_CMCondition_fail(cm, (int)(intptr_t) client_data); } static @@ -1527,7 +1538,7 @@ timeout_conn(CManager cm, void *client_data) int result; long wait_condition = INT_CMCondition_get(cm, NULL); CMTaskHandle task = INT_CMadd_delayed_task(cm, 5, 0, timeout_conn, - (void*)wait_condition); + (void*)(intptr_t)wait_condition); if (CMtrace_on(cm, CMConnectionVerbose)) { char *attr_str = attr_list_to_string(attrs); CMtrace_out(cm, CMConnectionVerbose, @@ -1629,10 +1640,10 @@ timeout_conn(CManager cm, void *client_data) fprintf(out, "CMConnection NULL\n"); return; } - fprintf(out, "CMConnection %lx, reference count %d, closed %d\n\tattrs : ", - (long) conn, conn->conn_ref_count, conn->closed); + fprintf(out, "CMConnection %p, reference count %d, closed %d\n\tattrs : ", + conn, conn->conn_ref_count, conn->closed); fdump_attr_list(out, conn->attrs); - fprintf(out, "\tbuffer_full_point %ld, current buffer_end %ld\n", + fprintf(out, "\tbuffer_full_point %zd, current buffer_end %zd\n", conn->buffer_full_point, conn->buffer_data_end); fprintf(out, "\twrite_pending %d\n", conn->write_pending); } @@ -1787,7 +1798,7 @@ timeout_conn(CManager cm, void *client_data) CMtrace_out(cm, CMBufferVerbose, "cm_get_data_buf called with len %zu\n", length); while (tmp != NULL) { - CMtrace_out(cm, CMBufferVerbose, " buffer %d %p, size is %ld, data %p, ref_count %d\n", + CMtrace_out(cm, CMBufferVerbose, " buffer %d %p, size is %zd, data %p, ref_count %d\n", buffer_count, tmp, tmp->size, tmp->buffer, tmp->ref_count); buffer_count++; tmp = tmp->next; @@ -1807,7 +1818,7 @@ timeout_conn(CManager cm, void *client_data) tmp = cm->cm_buffer_list; while (tmp != NULL) { if (tmp->ref_count <= 0) { - if ((tmp->size >= length) && ((tmp->size/10) < length)) { + if ((tmp->size >= (size_t)length) && ((tmp->size/10) < (size_t)length)) { CMtrace_out(cm, CMBufferVerbose, "cm_get_data_buf called len %zu, return existing %p, next %p, count %d\n", length, tmp, tmp->next, buffer_count); tmp->ref_count = 1; @@ -1820,7 +1831,7 @@ timeout_conn(CManager cm, void *client_data) tmp = cm->cm_buffer_list; while (tmp != NULL) { if (tmp->ref_count <= 0) { - if ((tmp->size >= length)) { + if ((tmp->size >= (size_t)length)) { char *t = INT_CMrealloc(tmp->buffer, length); if (t == NULL) { return NULL; @@ -1838,7 +1849,7 @@ timeout_conn(CManager cm, void *client_data) /* well, look for a small one to realloc up */ while (tmp != NULL) { if (tmp->ref_count <= 0) { - if (tmp->size <= length) { + if (tmp->size <= (size_t)length) { char *t = INT_CMrealloc(tmp->buffer, length); if (t == NULL) { return NULL; @@ -1927,18 +1938,18 @@ timeout_conn(CManager cm, void *client_data) CMbuffer tmp = cm->cm_buffer_list; printf("Known CM buffers are:\n"); while (tmp != NULL) { - printf("Buffer begin %p, size %ld, end %p\n", + printf("Buffer begin %p, size %zd, end %p\n", tmp->buffer, tmp->size, (char*)tmp->buffer + tmp->size); tmp = tmp->next; } return NULL; } - int (*cm_write_hook)(int) = (int (*)(int)) NULL; - int (*cm_preread_hook)(int,char*) = (int (*)(int, char*)) NULL; - void (*cm_postread_hook)(int,char*) = (void (*)(int, char*)) NULL; + int (*cm_write_hook)(size_t) = (int (*)(size_t)) NULL; + int (*cm_preread_hook)(size_t,char*) = (int (*)(size_t, char*)) NULL; + void (*cm_postread_hook)(size_t,char*) = (void (*)(size_t, char*)) NULL; void (*cm_last_postread_hook)() = (void (*)()) NULL; - static int CMact_on_data(CMConnection conn, CMbuffer cm_buffer, char *buffer, long length); + static size_t CMact_on_data(CMConnection conn, CMbuffer cm_buffer, char *buffer, size_t length); static void process_pending_queue(CManager cm, void *junk) { @@ -1948,11 +1959,11 @@ timeout_conn(CManager cm, void *client_data) CManager_lock(cm); while (cm->pending_data_queue) { pending_queue entry = cm->pending_data_queue; - int result; + size_t result; cm->pending_data_queue = entry->next; result = CMact_on_data(entry->conn, entry->buffer, entry->buffer->buffer, entry->length); if (result != 0) { - printf("in process pending, CMact_on_data returned %d\n", result); + printf("in process pending, CMact_on_data returned %zd\n", result); } cm_return_data_buf(cm, entry->buffer); free(entry); @@ -1984,7 +1995,7 @@ timeout_conn(CManager cm, void *client_data) static CMbuffer - fill_cmbuffer(CManager cm, char *buf, long length) + fill_cmbuffer(CManager cm, char *buf, size_t length) { CMbuffer ret = cm_get_data_buf(cm, length); memcpy(ret->buffer, buf, length); @@ -1996,11 +2007,11 @@ timeout_conn(CManager cm, void *client_data) CManager cm = conn->cm; int do_read = 1; int read_msg_count = 0; - long read_byte_count = 0; - int result; + size_t read_byte_count = 0; + size_t result; static int first = 1; static int read_ahead_msg_limit = 50; - static long read_ahead_byte_limit = 1024*1024*1024; + static size_t read_ahead_byte_limit = 1024*1024*1024; static int use_blocking_reads = 1; int first_four = 0; char *tmp_message_buffer = NULL; @@ -2020,7 +2031,7 @@ timeout_conn(CManager cm, void *client_data) } tmp = getenv("CMReadAheadByteLimit"); if (tmp != NULL) { - if (sscanf(tmp, "%ld", &read_ahead_byte_limit) != 1) { + if (sscanf(tmp, "%zd", &read_ahead_byte_limit) != 1) { printf("Read ahead byte limit \"%s\" not parsed\n", tmp); } } @@ -2054,7 +2065,7 @@ timeout_conn(CManager cm, void *client_data) first_four = 1; } if (trans->read_to_buffer_func) { - CMtrace_out(cm, CMLowLevelVerbose, "CMdata continuing read, already have %ld bytes, trying to read total %ld\n", buffer_data_end, buffer_full_point); + CMtrace_out(cm, CMLowLevelVerbose, "CMdata continuing read, already have %zd bytes, trying to read total %zd\n", buffer_data_end, buffer_full_point); } else { CMtrace_out(cm, CMLowLevelVerbose, "CMdata block read beginning\n"); } @@ -2117,7 +2128,7 @@ timeout_conn(CManager cm, void *client_data) return; } buffer_data_end += actual; - if (actual < read_len) { + if (actual < (ssize_t)read_len) { /* partial read, we know we don't have enough data now, roll on */ CMtrace_out(cm, CMLowLevelVerbose, "CMdata read partial, got %zu\n", actual); @@ -2192,7 +2203,7 @@ timeout_conn(CManager cm, void *client_data) if ((read_msg_count > read_ahead_msg_limit) || (read_byte_count > read_ahead_byte_limit)) { CMtrace_out(cm, CMDataVerbose, - "CM - readahead not tried, fairness, read %d msgs, %ld bytes\n", + "CM - readahead not tried, fairness, read %d msgs, %zd bytes\n", read_msg_count, read_byte_count); return; } else { @@ -2251,8 +2262,8 @@ timeout_conn(CManager cm, void *client_data) } } - static int - CMact_on_data(CMConnection conn, CMbuffer cm_buffer, char *buffer, long length) + static size_t + CMact_on_data(CMConnection conn, CMbuffer cm_buffer, char *buffer, size_t length) { char *base = buffer; char *check_sum_base = buffer; @@ -2336,9 +2347,9 @@ timeout_conn(CManager cm, void *client_data) case 0x4f494250: /* incoming FFS format protocol message */ { extern int CM_pbio_query(CMConnection conn, CMTransport trans, - char *buffer, long length); + char *buffer, size_t length); - int ret = CM_pbio_query(conn, conn->trans, buffer, length); + size_t ret = CM_pbio_query(conn, conn->trans, buffer, length); CManager_lock(cm); return ret; } @@ -2347,7 +2358,7 @@ timeout_conn(CManager cm, void *client_data) CManager_lock(cm); if (local) cm_return_data_buf(cm, local); if (ret == -1) { - printf("Unknown message on connection %lx, failed %d, closed %d, %x\n", (long) conn, conn->failed, conn->closed, *(int*)buffer); + printf("Unknown message on connection %p, failed %d, closed %d, %x\n", conn, conn->failed, conn->closed, *(int*)buffer); CMtrace_out(conn->cm, CMFreeVerbose, "Calling connection unknown message failed with dereference %p\n", conn); INT_CMConnection_failed(conn); } @@ -2476,7 +2487,7 @@ timeout_conn(CManager cm, void *client_data) } } - if (length < header_len + data_length + attr_length) { + if ((ssize_t)length < header_len + data_length + attr_length) { return header_len + data_length + attr_length - length; } @@ -2531,13 +2542,13 @@ timeout_conn(CManager cm, void *client_data) } if (event_msg) { CMbuffer local = NULL; - CMtrace_out(cm, CMDataVerbose, "CM - Receiving event message data len %ld, attr len %d, stone_id %x\n", - (long)data_length, attr_length, stone_id); + CMtrace_out(cm, CMDataVerbose, "CM - Receiving event message data len %" PRId64 ", attr len %d, stone_id %x\n", + data_length, attr_length, stone_id); if (attrs == NULL){ attrs = CMcreate_attr_list(cm); } - set_int_attr(attrs, CM_EVENT_SIZE, data_length); - set_long_attr(attrs, CM_INCOMING_CONNECTION, (long)conn); + set_int_attr(attrs, CM_EVENT_SIZE, (int)data_length); + set_long_attr(attrs, CM_INCOMING_CONNECTION, (intptr_t)conn); if (cm_buffer == NULL) { local = fill_cmbuffer(cm, buffer, length); @@ -2612,7 +2623,7 @@ timeout_conn(CManager cm, void *client_data) if (FFSdecode_in_place_possible(original_format)) { if (!FFSdecode_in_place(cm->FFScontext, data_buffer, - (void**) (long) &decode_buffer)) { + (void**) (intptr_t) &decode_buffer)) { printf("Decode failed\n"); return 0; } @@ -2761,8 +2772,8 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) extern void CMWriteQueuedData(transport_entry trans, CMConnection conn) { attr_list attrs = NULL; /* GSE fix */ - CMtrace_out(conn->cm, CMLowLevelVerbose, "CMWriteQueuedData, conn %lx, header %d, attr %d\n", - (long)conn, conn->queued_data.rem_header_len, + CMtrace_out(conn->cm, CMLowLevelVerbose, "CMWriteQueuedData, conn %p, header %zd, attr %zd\n", + conn, conn->queued_data.rem_header_len, conn->queued_data.rem_attr_len); if (conn->queued_data.rem_header_len != 0) { struct FFSEncodeVec tmp_vec[1]; @@ -2776,12 +2787,12 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) if (actual == -1) { goto failed; } - if (actual < conn->queued_data.rem_header_len) { + if (actual < (ssize_t)conn->queued_data.rem_header_len) { conn->queued_data.rem_header_len -= actual; memmove(&conn->queued_data.rem_header[0], &conn->queued_data.rem_header[actual], conn->queued_data.rem_header_len); - CMtrace_out(conn->cm, CMLowLevelVerbose, "CMWriteQueuedData, conn %p, remaining header %d\n", + CMtrace_out(conn->cm, CMLowLevelVerbose, "CMWriteQueuedData, conn %p, remaining header %zd\n", conn, conn->queued_data.rem_header_len); return; } @@ -2798,10 +2809,10 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) if (actual == -1) { goto failed; } - if (actual < conn->queued_data.rem_attr_len) { + if (actual < (ssize_t)conn->queued_data.rem_attr_len) { conn->queued_data.rem_attr_len -= actual; conn->queued_data.rem_attr_base += actual; - CMtrace_out(conn->cm, CMLowLevelVerbose, "CMWriteQueuedData, conn %p, remaining attr %d\n", + CMtrace_out(conn->cm, CMLowLevelVerbose, "CMWriteQueuedData, conn %p, remaining attr %zd\n", conn, conn->queued_data.rem_attr_len); return; } @@ -2823,10 +2834,10 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) if (actual == -1) { goto failed; } - if (actual < length) { + if (actual < (ssize_t)length) { int i = 0; CMtrace_out(conn->cm, CMLowLevelVerbose, "Continued partial pending write, %zu bytes sent\n", actual); - while (actual > vec[i].iov_len) { + while (actual > (ssize_t)vec[i].iov_len) { actual -= vec[i].iov_len; i++; vec_count--; @@ -2834,8 +2845,8 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) vec[i].iov_len -= actual; vec[i].iov_base = (char*)vec[i].iov_base + actual; conn->queued_data.vector_data = &vec[i]; - CMtrace_out(conn->cm, CMLowLevelVerbose, "CMWriteQueuedData, conn %lx, %zu remaining data vectors\n", - (long)conn, vec_count); + CMtrace_out(conn->cm, CMLowLevelVerbose, "CMWriteQueuedData, conn %p, %zu remaining data vectors\n", + conn, vec_count); return; } } @@ -2880,7 +2891,7 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) if (conn->write_callbacks) { int i = 0; CMConnHandlerListEntry callbacks[16]; - int callback_len = conn->write_callback_len; + size_t callback_len = conn->write_callback_len; assert(conn->write_callback_len <= 16); memcpy(callbacks, conn->write_callbacks, sizeof(callbacks[0]) * conn->write_callback_len); for (i = 0; i < callback_len; ++i) { @@ -3029,7 +3040,8 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) } static void - remove_pending_write_callback_by_id(CMConnection conn, int id) { + remove_pending_write_callback_by_id(CMConnection conn, SOCKET ids) { + int id = (int)(intptr_t)ids; assert(id < conn->write_callback_len && id >= 0); conn->write_callbacks[id].func = NULL; } @@ -3071,7 +3083,7 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) static void wake_pending_write(CManager cm, CMConnection conn, void *param) { - int cond = (long)param; + int cond = (int)(intptr_t)param; remove_pending_write_callback(conn, wake_pending_write, param); INT_CMCondition_signal(cm, cond); } @@ -3094,7 +3106,7 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) while (conn->write_pending && !conn->closed) { int cond = INT_CMCondition_get(conn->cm, conn); add_pending_write_callback(conn, wake_pending_write, - (void*) (long)cond); + (void*) (intptr_t)cond); CMtrace_out(conn->cm, CMLowLevelVerbose, "Condition wait for conn %p\n", conn); if (INT_CMCondition_wait(conn->cm, cond) == 0) { /* condition wait failed, connection is dead */ @@ -3113,7 +3125,7 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) int INT_CMwrite_raw(CMConnection conn, FFSEncodeVector full_vec, FFSEncodeVector data_vec, - long vec_count, long byte_count, attr_list attrs, int data_vec_stack) + long vec_count, size_t byte_count, attr_list attrs, int data_vec_stack) { return INT_CMwrite_raw_notify(conn, full_vec, data_vec, vec_count, byte_count, attrs, data_vec_stack, NULL, NULL); @@ -3122,13 +3134,13 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) /* Returns 1 if successful, -1 if deferred, 0 on error */ int INT_CMwrite_raw_notify(CMConnection conn, FFSEncodeVector full_vec, FFSEncodeVector data_vec, - long vec_count, long byte_count, attr_list attrs, int data_vec_stack, + long vec_count, size_t byte_count, attr_list attrs, int data_vec_stack, CMcompletion_notify_func notify_func, void *notify_client_data) { size_t actual = 0; unsigned char checksum = 0; int i, j, start; - long count = 0; + size_t count = 0; size_t length = 0; if (conn->closed || conn->failed) return 0; @@ -3169,7 +3181,7 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) conn->transport_data, 0); cm_wake_any_pending_write(conn); } - if (actual_bytes < length) { + if (actual_bytes < (ssize_t)length) { /* copy remaining and send it later */ if (actual_bytes < 0 ) actual_bytes = 0; if (data_vec_stack) { @@ -3180,7 +3192,7 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) conn->trans->set_write_notify(conn->trans, &CMstatic_trans_svcs, conn->transport_data, 1); conn->write_pending = 1; CMtrace_out(conn->cm, CMLowLevelVerbose, - "Partial write, queued %ld bytes\n", + "Partial write, queued %zd bytes\n", length - actual_bytes); return 1; } @@ -3230,7 +3242,7 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) void *header_ptr = NULL; int header_len = 0; int no_attr_header[2] = {0x434d4400, 0}; /* CMD\0 in first entry */ - int no_attr_long_header[4] = {0x434d4401, 0x434d4401, 0, 0}; /* CMD\1 in first entry, pad to 16 */ +// not yet impl int no_attr_long_header[4] = {0x434d4401, 0x434d4401, 0, 0}; /* CMD\1 in first entry, pad to 16 */ int attr_header[4] = {0x434d4100, 0x434d4100, 0, 0}; /* CMA\0 in first entry, pad to 16 */ int attr_long_header[4] = {0x434d4101, 0, 0, 0}; /* CMA\1 in first entry */ FFSEncodeVector vec; @@ -3316,11 +3328,11 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) } if (!long_message) { if (attrs_present) { - attr_header[2] = length; + attr_header[2] = (int)length; header_ptr = &attr_header; header_len = sizeof(attr_header); } else { - no_attr_header[1] = length; + no_attr_header[1] = (int)length; header_ptr = &no_attr_header; header_len = sizeof(no_attr_header); } @@ -3372,7 +3384,7 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) vec_count, byte_count); } - actual = INT_CMwrite_raw(conn, tmp_vec, vec, vec_count, byte_count, attrs, 0); + actual = INT_CMwrite_raw(conn, tmp_vec, vec, (int)vec_count, byte_count, attrs, 0); if (tmp_vec != &static_vec[0]) { INT_CMfree(tmp_vec); } @@ -3390,12 +3402,12 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) #ifdef EV_INTERNAL_H extern int internal_write_event(CMConnection conn, CMFormat format, void *remote_path_id, - int path_len, event_item *event, attr_list attrs, long *event_len_p) + int path_len, event_item *event, attr_list attrs, size_t *event_len_p) { FFSEncodeVector vec; struct FFSEncodeVec preencoded_vec[2]; - long data_length = 0, actual; - size_t vec_count = 0; + size_t data_length = 0, actual; + long vec_count = 0; int attr_len = 0; int do_write = 1; void *encoded_attrs = NULL; @@ -3436,7 +3448,7 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) dump_char_limit = atoi(size_str); } } - fprintf(cm->CMTrace_file, "CM - Writing EVENT record %lx of type %s\n", (long)event, + fprintf(cm->CMTrace_file, "CM - Writing EVENT record %p of type %s\n", event, name_of_FMformat(format->fmformat)); if (attrs != NULL) { fprintf(cm->CMTrace_file, "CM - write attributes are:"); @@ -3485,7 +3497,7 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) &attr_len); attr_len = (attr_len +7) & -8; /* round up to even 8 */ } - CMtrace_out(conn->cm, CMDataVerbose, "CM - Total write size is %ld bytes data + %d bytes attrs\n", data_length, attr_len); + CMtrace_out(conn->cm, CMDataVerbose, "CM - Total write size is %zd bytes data + %d bytes attrs\n", data_length, attr_len); if (cm_write_hook != NULL) { do_write = cm_write_hook(data_length); } @@ -3497,7 +3509,7 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) if (vec_count >= sizeof(static_vec)/ sizeof(static_vec[0])) { tmp_vec = INT_CMmalloc((vec_count+3) * sizeof(*tmp_vec)); } - header[1] = data_length; + header[1] = (int)data_length; if (path_len != 4) { header[0] = 0x434d4700; header[3] = (path_len + 7) & -8; @@ -3520,7 +3532,7 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) vec_count++; byte_count += sizeof(header); CMtrace_out(conn->cm, CMLowLevelVerbose, - "Writing %zu vectors, total %zu bytes in writev\n", + "Writing %lu vectors, total %zu bytes in writev\n", vec_count, byte_count); } else { tmp_vec[0].iov_base = &header; @@ -3532,10 +3544,9 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) byte_count += sizeof(header) + header[2]; vec_count += 2; CMtrace_out(conn->cm, CMLowLevelVerbose, - "Writing %zu vectors, total %zu bytes (including attrs) in writev\n", + "Writing %lu vectors, total %zu bytes (including attrs) in writev\n", vec_count, byte_count); } - char *header_ptr = (char*)&header[0]; actual = INT_CMwrite_raw(conn, tmp_vec, vec, vec_count, byte_count, attrs, vec == &preencoded_vec[0]); if (tmp_vec != &static_vec[0]) { @@ -3589,13 +3600,13 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) } extern void - INT_CMunregister_write_callback(CMConnection conn, int id) + INT_CMunregister_write_callback(CMConnection conn, SOCKET id) { remove_pending_write_callback_by_id(conn, id); } extern void - INT_CM_fd_add_select(CManager cm, int fd, select_list_func handler_func, + INT_CM_fd_add_select(CManager cm, SOCKET fd, select_list_func handler_func, void *param1, void *param2) { if (!handler_func) { @@ -3611,7 +3622,7 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) } extern void - CM_fd_write_select(CManager cm, int fd, select_list_func handler_func, + CM_fd_write_select(CManager cm, SOCKET fd, select_list_func handler_func, void *param1, void *param2) { if (!cm->control_list->select_initialized) { @@ -3623,7 +3634,7 @@ INT_CMregister_invalid_message_handler(CManager cm, CMUnregCMHandler handler) } extern void - CM_fd_remove_select(CManager cm, int fd) + CM_fd_remove_select(CManager cm, SOCKET fd) { if (!cm->control_list->select_initialized) { CM_init_select(cm->control_list, cm); @@ -3830,21 +3841,21 @@ CM_init_select(CMControlList cl, CManager cm) thr_thread_t server_thread = thr_fork((void*(*)(void*))server_thread_func, (void*)cm); - if (server_thread == (thr_thread_t) NULL) { + if (server_thread == (thr_thread_t) (intptr_t)NULL) { return; } CMtrace_out(cm, CMLowLevelVerbose, - "CM - Forked comm thread %lx\n", (long)server_thread); + "CM - Forked comm thread %p\n", (void*)(intptr_t)server_thread); cm->control_list->server_thread = server_thread; cm->control_list->cl_reference_count++; cm->control_list->free_reference_count++; cl->has_thread = 1; cm->reference_count++; - CMtrace_out(cm, CMFreeVerbose, "Forked - CManager %lx ref count now %d\n", - (long) cm, cm->reference_count); + CMtrace_out(cm, CMFreeVerbose, "Forked - CManager %p ref count now %d\n", + cm, cm->reference_count); } cl->select_initialized = 1; - CMtrace_out(cm, CMFreeVerbose, "CManager adding select shutdown function, %lx\n",(long)shutdown_function); + CMtrace_out(cm, CMFreeVerbose, "CManager adding select shutdown function, %p\n",shutdown_function); internal_add_shutdown_task(cm, select_shutdown, (void*)shutdown_function, SHUTDOWN_TASK); { void ** data = malloc(3 * sizeof(void*)); @@ -3859,7 +3870,7 @@ CM_init_select(CMControlList cl, CManager cm) wake_function(CManager cm, void *cond) { CManager_lock(cm); - INT_CMCondition_signal(cm, (int)(long)cond); + INT_CMCondition_signal(cm, (int)(intptr_t)cond); CManager_unlock(cm); } @@ -3868,7 +3879,7 @@ CM_init_select(CMControlList cl, CManager cm) { int cond = INT_CMCondition_get(cm, NULL); CMTaskHandle handle = - INT_CMadd_delayed_task(cm, sec, 0, wake_function, (void*)(long)cond); + INT_CMadd_delayed_task(cm, sec, 0, wake_function, (void*)(intptr_t)cond); INT_CMfree(handle); INT_CMCondition_wait(cm, cond); } @@ -3878,7 +3889,7 @@ CM_init_select(CMControlList cl, CManager cm) { int cond = INT_CMCondition_get(cm, NULL); CMTaskHandle handle = - INT_CMadd_delayed_task(cm, 0, usec, wake_function, (void*)(long)cond); + INT_CMadd_delayed_task(cm, 0, usec, wake_function, (void*)(intptr_t)cond); INT_CMfree(handle); INT_CMCondition_wait(cm, cond); } @@ -3952,6 +3963,20 @@ int offset_compare(const void* lhsv, const void* rhsv) return lhs->offset.tv_usec - rhs->offset.tv_usec; } +#ifdef _MSC_VER +static inline void timeradd(struct timeval *a, struct timeval *b, + struct timeval *res) +{ + res->tv_sec = a->tv_sec + b->tv_sec; + res->tv_usec = a->tv_usec + b->tv_usec; + if (res->tv_usec >= 1000000) + { + res->tv_usec -= 1000000; + res->tv_sec++; + } +} +#endif + extern int INT_CMinstall_pull_schedule(CManager cm, struct timeval *base_time, struct timeval *period, CMavail_period_ptr avail) @@ -4003,7 +4028,7 @@ INT_CMinstall_pull_schedule(CManager cm, struct timeval *base_time, cm->avail = sorted; transport_entry *trans_list; trans_list = cm->transports; - CMtrace_out(cm, CMTransportVerbose, "CM installed pull schedule with period %ld secs, %ld usecs\n", period->tv_sec, (long) period->tv_usec); + CMtrace_out(cm, CMTransportVerbose, "CM installed pull schedule with period %ld secs, %zd usecs\n", period->tv_sec, (size_t) period->tv_usec); while ((trans_list != NULL) && (*trans_list != NULL)) { if ((*trans_list)->install_pull_schedule_func) { (*trans_list)->install_pull_schedule_func(&CMstatic_trans_svcs, diff --git a/cm_control.c b/cm_control.c index 72f0f5426b..4344aedf6c 100644 --- a/cm_control.c +++ b/cm_control.c @@ -238,11 +238,11 @@ INT_CMCondition_wait(CManager cm, int condition) } cond->waiting++; if (cm_control_debug_flag) { - fprintf(cm->CMTrace_file, "CMLowLevel In condition wait, server thread = %lx\n", - (long)cl->server_thread); + fprintf(cm->CMTrace_file, "CMLowLevel In condition wait, server thread = %p\n", + (void*)(intptr_t)cl->server_thread); } if (!cl->has_thread) { - if ((cl->server_thread == (thr_thread_t) NULL) || (cl->server_thread == thr_thread_self())) { + if ((cl->server_thread == (thr_thread_t) (intptr_t) NULL) || (cl->server_thread == thr_thread_self())) { cl->cond_polling = 1; while (!(cond->signaled || cond->failed)) { if (cm_control_debug_flag) { @@ -255,7 +255,7 @@ INT_CMCondition_wait(CManager cm, int condition) fprintf(cm->CMTrace_file, "CMLowLevel after Polling for CMcondition %d\n", condition); } /* the poll and handle will set cl->server_thread, restore it */ - cl->server_thread = (thr_thread_t) NULL; + cl->server_thread = (thr_thread_t) (intptr_t)NULL; if (cm_control_debug_flag) { fprintf(cm->CMTrace_file, "CMLowLevel In condition wait, reset server thread = %lx\n", (long)cl->server_thread); diff --git a/cm_evol.c b/cm_evol.c index b091f014fb..bd661eac22 100644 --- a/cm_evol.c +++ b/cm_evol.c @@ -11,7 +11,7 @@ #endif #include #ifdef HAVE_WINDOWS_H -#include +#include #define __ANSI_CPP__ #else #include diff --git a/cm_formats.c b/cm_formats.c index 4bb978a1c2..a040751f89 100644 --- a/cm_formats.c +++ b/cm_formats.c @@ -8,7 +8,9 @@ #ifdef HAVE_MALLOC_H #include #endif +#ifdef HAVE_UNISTD_H #include +#endif #include #else diff --git a/cm_internal.h b/cm_internal.h index bbbeda2199..173a1ce366 100644 --- a/cm_internal.h +++ b/cm_internal.h @@ -1,7 +1,7 @@ #ifndef __I_O__ #include #endif -#ifndef _SYS_TIME_H +#ifdef HAVE_SYS_TIME_H #include "sys/time.h" #endif #ifndef _CM_SCHEDULE_H @@ -11,6 +11,7 @@ #include "config.h" #endif +#ifndef _MSC_VER #include #define thr_mutex_t pthread_mutex_t #define thr_thread_t pthread_t @@ -18,7 +19,7 @@ #define thr_thread_self() pthread_self() #define thr_thread_exit(status) pthread_exit(status); #define thr_thread_detach(thread) pthread_detach(thread); -#define thr_thread_yield() pthread_yield(); +#define thr_thread_yield() sched_yield() #define thr_thread_join(t, s) pthread_join(t, s) #define thr_mutex_init(m) pthread_mutex_init(&m, NULL); #define thr_mutex_lock(m) pthread_mutex_lock(&m); @@ -29,6 +30,29 @@ #define thr_condition_signal(c) pthread_cond_signal(&c); #define thr_condition_broadcast(c) pthread_cond_broadcast(&c); #define thr_condition_free(c) pthread_cond_destroy(&c); +#define thr_thread_create(w,x,y,z) pthread_create(w,x,y,z); +#else +//#include +#include +#define thr_mutex_t HANDLE +#define thr_thread_t DWORD +#define thr_condition_t HANDLE +#define thr_thread_create(w,x,y,z) 0 +#define thr_thread_self() GetCurrentThreadId() +#define thr_thread_exit(status) +#define thr_thread_detach(thread) +#define thr_thread_yield() +#define thr_thread_join(t, s) (void)s +#define thr_mutex_init(m) +#define thr_mutex_lock(m) +#define thr_mutex_unlock(m) +#define thr_mutex_free(m) +#define thr_condition_init(c) +#define thr_condition_wait(c, m) +#define thr_condition_signal(c) +#define thr_condition_broadcast(c) +#define thr_condition_free(c) +#endif #include @@ -221,9 +245,9 @@ typedef struct _CMControlList { struct queued_data_rec { char rem_header[32]; - int rem_header_len; + size_t rem_header_len; char *rem_attr_base; - int rem_attr_len; + size_t rem_attr_len; FFSEncodeVector vector_data; CMbuffer buffer_to_free; }; @@ -267,14 +291,14 @@ struct _CMConnection { CMCloseHandlerList close_list; - int write_callback_len; + size_t write_callback_len; CMConnHandlerList write_callbacks; AttrBuffer attr_encode_buffer; char header_buffer[HEADER_BUFFER_SIZE]; /* holds data until we know final size */ CMbuffer message_buffer; /* final destination of buffer */ - long buffer_full_point; /* data required for buffer to be full */ - long buffer_data_end; /* last point with valid data in buffer */ + size_t buffer_full_point; /* data required for buffer to be full */ + size_t buffer_data_end; /* last point with valid data in buffer */ attr_list characteristics; chr_time bandwidth_start_time; @@ -335,14 +359,14 @@ extern void CMtransport_trace(CManager cm, const char *format, ...); extern void CMtransport_verbose(CManager cm, CMTraceType trace, const char *format, ...); extern void -CM_fd_add_select(CManager cm, int fd, select_list_func handler_func, +CM_fd_add_select(CManager cm, SOCKET fd, select_list_func handler_func, void *param1, void *param2); extern void -CM_fd_write_select(CManager cm, int fd, select_list_func handler_func, +CM_fd_write_select(CManager cm, SOCKET fd, select_list_func handler_func, void *param1, void *param2); -extern void CM_fd_remove_select(CManager cm, int fd); +extern void CM_fd_remove_select(CManager cm, SOCKET fd); extern CMConnection CMConnection_create(transport_entry trans, void *transport_data, @@ -379,7 +403,7 @@ internal_add_shutdown_task(CManager cm, CMPollFunc func, void *client_data, int extern void internal_cm_network_submit(CManager cm, CMbuffer cm_data_buf, attr_list attrs, CMConnection conn, - void *buffer, int length, int stone_id); + void *buffer, size_t length, int stone_id); #define CMcreate_attr_list(cm) CMint_create_attr_list(cm, __FILE__, __LINE__) #define INT_CMfree_attr_list(cm, l) CMint_free_attr_list(cm, l, __FILE__, __LINE__) #define CMadd_ref_attr_list(cm, l) CMint_add_ref_attr_list(cm, l, __FILE__, __LINE__) @@ -394,8 +418,10 @@ extern attr_list CMint_attr_copy_list(CManager cm, attr_list l, char *file, int extern void CMint_attr_merge_lists(CManager cm, attr_list l1, attr_list l2, char *file, int line); extern attr_list CMint_decode_attr_from_xmit(CManager cm, void * buf, char *file, int line); -extern void* INT_CMrealloc(void *ptr, int size); -extern void* INT_CMmalloc(int size); +extern void* INT_CMrealloc(void *ptr, size_t size); +extern void* INT_CMmalloc(size_t size); +#define malloc(x) INT_CMmalloc(x) +#define realloc(ptr, size) INT_CMrealloc(ptr, size) extern void INT_CMfree(void *ptr); extern void INT_CMadd_shutdown_task(CManager cm, CMPollFunc func, void *client_data, int task_type); extern void INT_CManager_close(CManager cm); @@ -479,7 +505,7 @@ INT_CMregister_write_callback(CMConnection conn, CMWriteCallbackFunc handler, void *client_data); extern void -INT_CMunregister_write_callback(CMConnection conn, int id); +INT_CMunregister_write_callback(CMConnection conn, SOCKET id); extern void INT_CMadd_poll(CManager cm, CMPollFunc func, void *client_data); extern void @@ -531,7 +557,7 @@ INT_CMprobe_bandwidth(CMConnection conn, long size, attr_list attrs); extern int INT_CMConnection_write_would_block(CMConnection conn); extern void INT_CMusleep(CManager cm, int usecs); extern void INT_CM_insert_contact_info(CManager cm, attr_list attrs); -extern void INT_CM_fd_add_select(CManager cm, int fd, select_func handler_func, void *param1, void *param2); +extern void INT_CM_fd_add_select(CManager cm, SOCKET fd, select_func handler_func, void *param1, void *param2); extern void INT_CMstart_read_thread(CMConnection conn); extern void INT_EVadd_standard_routines(CManager cm, char *extern_string, cod_extern_entry *externs); extern void INT_EVadd_standard_structs(CManager cm, FMStructDescList *lists); @@ -543,6 +569,20 @@ extern int CMtrace_PID; extern int CMtrace_init(CManager cm, CMTraceType t); extern void INT_CMTrace_file_id(int ID); #define CMtrace_on(cm, trace_type) ((cm->CMTrace_file == NULL) ? CMtrace_init(cm, trace_type) : CMtrace_val[trace_type]) +#ifdef _MSC_VER +#include +#include +#define CLOCK_MONOTONIC 1 +static int clock_gettime(int cl, struct timespec* spec) +{ + __int64 wintime; GetSystemTimeAsFileTime((FILETIME*)&wintime); + wintime -= 116444736000000000i64; //1jan1601 to 1jan1970 + spec->tv_sec = (long)(wintime / 10000000i64); //seconds + spec->tv_nsec = wintime % 10000000i64 * 100; //nano-seconds + return 0; +} +#define HAVE_CLOCK_GETTIME +#endif #ifdef HAVE_CLOCK_GETTIME #define TRACE_TIME_DECL struct timespec ts #define TRACE_TIME_GET clock_gettime(CLOCK_MONOTONIC, &ts) @@ -552,15 +592,16 @@ extern void INT_CMTrace_file_id(int ID); #define TRACE_TIME_GET gettimeofday(&tv, NULL) #define TRACE_TIME_PRINTDETAILS "%lld.%.6ld - ", (long long)tv.tv_sec, (long)tv.tv_usec #endif + #define CMtrace_out(cm, trace_type, ...) {TRACE_TIME_DECL ; (CMtrace_on(cm,trace_type) ? (CMtrace_PID ? fprintf(cm->CMTrace_file, "P%lxT%lx - ", (long) getpid(), (long)thr_thread_self()) : 0) , CMtrace_timing? TRACE_TIME_GET,fprintf(cm->CMTrace_file, TRACE_TIME_PRINTDETAILS):0, fprintf(cm->CMTrace_file, __VA_ARGS__) : 0);fflush(cm->CMTrace_file);} -extern void CMdo_performance_response(CMConnection conn, long length, int func, +extern void CMdo_performance_response(CMConnection conn, size_t length, int func, int byte_swap, char *buffer); extern int INT_CMwrite_raw(CMConnection conn, FFSEncodeVector full_vec, FFSEncodeVector data_vec, - long vec_count, long byte_count, attr_list attrs, int data_vec_stack); + long vec_count, size_t byte_count, attr_list attrs, int data_vec_stack); int INT_CMwrite_raw_notify(CMConnection conn, FFSEncodeVector full_vec, FFSEncodeVector data_vec, - long vec_count, long byte_count, attr_list attrs, int data_vec_stack, + long vec_count, size_t byte_count, attr_list attrs, int data_vec_stack, CMcompletion_notify_func notify_func, void *notify_client_data); extern void INT_CMConnection_dereference(CMConnection conn); diff --git a/cm_lock.c b/cm_lock.c index 067dca5025..1522f9c9ca 100644 --- a/cm_lock.c +++ b/cm_lock.c @@ -1,20 +1,18 @@ #include "config.h" -#ifndef MODULE #include #include +#ifdef HAVE_UNISTD_H #include -#else -#include "kernel/kcm.h" -#include "kernel/library.h" #endif +#include "config.h" + #include "ffs.h" #include "atl.h" #include "evpath.h" #include "chr_time.h" #include "cm_internal.h" -#include "config.h" #undef NDEBUG #include "assert.h" diff --git a/cm_pbio.c b/cm_pbio.c index cbec85342a..9e41a5d42b 100644 --- a/cm_pbio.c +++ b/cm_pbio.c @@ -3,10 +3,12 @@ #ifndef MODULE #include #include +#ifdef HAVE_UNISTD_H #include +#endif #include #ifdef HAVE_WINDOWS_H -#include +#include #else #include #include @@ -127,7 +129,7 @@ static int CMpbio_send_format_request(char *format_ID, int format_ID_length, CMConnection conn, int cond); extern int CM_pbio_query(CMConnection conn, CMTransport trans, - char *buffer, long length); + char *buffer, size_t length); static int request_in_pending(CManager cm, void *format_ID, int format_id_length) @@ -540,7 +542,7 @@ byte_swap(char *data, int size) } extern int -CM_pbio_query(CMConnection conn, CMTransport trans, char *buffer, long length) +CM_pbio_query(CMConnection conn, CMTransport trans, char *buffer, size_t length) { struct pbio_exchange_msg tmp_msg; struct pbio_exchange_msg *msg; diff --git a/cm_perf.c b/cm_perf.c index 065ca1e94f..a1328f0c3c 100644 --- a/cm_perf.c +++ b/cm_perf.c @@ -12,7 +12,7 @@ #endif #include #ifdef HAVE_WINDOWS_H -#include +#include #define __ANSI_CPP__ #else #include @@ -60,7 +60,7 @@ static atom_t CM_TRANS_MEGABITS_SEC = -1; #define CMRegressivePerfBandwidthResult (unsigned int) 0xf9 void -CMdo_performance_response(CMConnection conn, long length, int func, +CMdo_performance_response(CMConnection conn, size_t length, int func, int byte_swap, char *buffer) { /* part of length was read already */ @@ -89,7 +89,7 @@ CMdo_performance_response(CMConnection conn, long length, int func, tmp_vec[1].iov_len = length - sizeof(header); tmp_vec[1].iov_base = buffer; - CMtrace_out(conn->cm, CMTransportVerbose, "CM - responding to latency probe of %ld bytes\n", length); + CMtrace_out(conn->cm, CMTransportVerbose, "CM - responding to latency probe of %zd bytes\n", length); actual = INT_CMwrite_raw(conn, tmp_vec, tmp_vec + 1, 2, length, NULL, 0); if (actual != 2) { printf("perf write failed\n"); @@ -230,7 +230,7 @@ CMdo_performance_response(CMConnection conn, long length, int func, if (upcall_result) { str_list = attr_list_to_string(upcall_result); free_attr_list(upcall_result); - tmp_vec[1].iov_len = header[4] = strlen(str_list) + 1; + tmp_vec[1].iov_len = header[4] = (int)strlen(str_list) + 1; tmp_vec[1].iov_base = str_list; header[2] += header[4]; } @@ -524,7 +524,7 @@ INT_CMtest_transport(CMConnection conn, attr_list how) struct FFSEncodeVec *write_vec; struct FFSEncodeVec *tmp_vec, *header_vec; int header[6]; - long size; + ssize_t size; int vecs = 1; int verbose = 0; int repeat_count = 1; @@ -558,7 +558,7 @@ INT_CMtest_transport(CMConnection conn, attr_list how) char *attr_str = attr_list_to_string(how); - start_size = strlen(attr_str) + sizeof(header) + 1; + start_size = (int)strlen(attr_str) + (int)sizeof(header) + 1; /* CMP\0 in first entry for CMPerformance message */ ((int*)header)[0] = 0x434d5000; /* size in second entry, high byte gives CMPerf operation */ @@ -573,7 +573,7 @@ INT_CMtest_transport(CMConnection conn, attr_list how) ((int*)header)[5] = 0; INT_CMCondition_set_client_data( conn->cm, cond, &result); - CMtrace_out(conn->cm, CMTransportVerbose, "CM - Initiating transport test of %ld bytes, %d messages\n", size, repeat_count); + CMtrace_out(conn->cm, CMTransportVerbose, "CM - Initiating transport test of %zd bytes, %d messages\n", size, repeat_count); CMtrace_out(conn->cm, CMTransportVerbose, "CM - transport test, sending first message\n"); @@ -590,7 +590,7 @@ INT_CMtest_transport(CMConnection conn, attr_list how) } tmp_vec = NULL; - int each = (size + vecs - 1) / vecs; + size_t each = (size + vecs - 1) / vecs; for (i=0; i tmp_vec[0].iov_len) { diff --git a/cm_schedule.h b/cm_schedule.h index d2eec1a364..32ed8bb54b 100644 --- a/cm_schedule.h +++ b/cm_schedule.h @@ -7,6 +7,9 @@ extern "C" { #endif +#ifdef _MSC_VER +#include +#endif typedef struct _avail_period { struct timeval offset; struct timeval duration; diff --git a/cm_threadio.c b/cm_threadio.c index 9d4e76a455..08441bbd12 100644 --- a/cm_threadio.c +++ b/cm_threadio.c @@ -43,14 +43,12 @@ void* read_thread_func(void *conn_raw) { } static thr_thread_t -thr_fork(func, arg) -void*(*func)(void*); -void *arg; +thr_fork(void*(*func)(void*), void *arg) { - pthread_t new_thread = 0; - int err = pthread_create(&new_thread, NULL, (void*(*)(void*))func, arg); + thr_thread_t new_thread = 0; + int err = thr_thread_create(&new_thread, NULL, (void*(*)(void*))func, arg); if (err != 0) { - return (thr_thread_t) NULL; + return (thr_thread_t) (intptr_t) NULL; } else { return (thr_thread_t) new_thread; } diff --git a/cm_transport.c b/cm_transport.c index 27e949d021..33e7883f2d 100644 --- a/cm_transport.c +++ b/cm_transport.c @@ -1,27 +1,22 @@ #include "config.h" -#ifndef MODULE #include #include #include +#ifdef HAVE_UNISTD_H #include -#else -#include "kernel/kcm.h" -#include "kernel/cm_kernel.h" -#include "kernel/library.h" -/* don't pull in sys/types if MODULE is defined */ -#define _SYS_TYPES_H #endif + #include #include #include "chr_time.h" -#include -#include #if !NO_DYNAMIC_LINKING #include "dlloader.h" #endif #undef NDEBUG #include "assert.h" +#include +#include extern struct CMtrans_services_s CMstatic_trans_svcs; /* const lt_dlsymlist lt_preloaded_symbols[1] = { { 0, 0 } }; */ @@ -159,15 +154,15 @@ load_transport(CManager cm, const char *trans_name, int quiet) lt_dlsym(handle, "initialize"); transport->listen = (CMTransport_listen_func) lt_dlsym(handle, "non_blocking_listen"); - transport->initiate_conn = (CMConnection(*)()) + transport->initiate_conn = (CMTransport_conn_func) lt_dlsym(handle, "initiate_conn"); transport->initiate_conn_nonblocking = (CMTransport_NBconn_func) lt_dlsym(handle, "initiate_conn_nonblocking"); - transport->finalize_conn_nonblocking = (CMConnection(*)()) + transport->finalize_conn_nonblocking = (CMTransport_NBconn_final_func) lt_dlsym(handle, "finalize_conn_nonblocking"); - transport->self_check = (int (*)()) lt_dlsym(handle, "self_check"); + transport->self_check = (CMTransport_self_check_func) lt_dlsym(handle, "self_check"); transport->connection_eq = - (int (*)()) lt_dlsym(handle, "connection_eq"); + (CMTransport_connection_eq_func) lt_dlsym(handle, "connection_eq"); transport->shutdown_conn = (CMTransport_shutdown_conn_func) lt_dlsym(handle, "shutdown_conn"); transport->read_to_buffer_func = (CMTransport_read_to_buffer_func) diff --git a/cm_transport.h b/cm_transport.h index 5dbba4da04..929c2f1b5b 100644 --- a/cm_transport.h +++ b/cm_transport.h @@ -4,7 +4,7 @@ #if defined(__cplusplus) || defined(c_plusplus) extern "C" { #endif -#ifndef _SYS_TIME_H +#ifdef HAVE_SYS_TIME_H #include "sys/time.h" #endif #ifndef _CM_SCHEDULE_H @@ -13,13 +13,22 @@ extern "C" { #include #include "sys/types.h" +#ifdef _MSC_VER +#include + typedef SSIZE_T ssize_t; +#else +#include +#ifndef SOCKET +#define SOCKET int +#endif +#endif typedef struct _transport_item *transport_entry; typedef struct _transport_item *CMTransport; typedef struct _CMbuffer { void *buffer; - long size; + size_t size; int ref_count; struct _CMbuffer *next; void (*return_callback)(void *); @@ -31,21 +40,21 @@ typedef enum _CMTraceType { CMLastTraceType /* add before this one */ } CMTraceType; -typedef void *(*CMTransport_malloc_func)(int); -typedef void *(*CMTransport_realloc_func)(void*, int); +typedef void *(*CMTransport_malloc_func)(size_t); +typedef void *(*CMTransport_realloc_func)(void*, size_t); typedef void (*CMTransport_free_func)(void*); typedef void (*CMTransport_wake_comm_thread_func)(CManager cm); typedef void (*CMTransport_condition_signal_func)(CManager cm, int condition); typedef void (*select_list_func)(void *, void*); -typedef void (*CMAddSelectFunc)(void *svcs, void *select_data, int fd, +typedef void (*CMAddSelectFunc)(void *svcs, void *select_data, SOCKET fd, select_list_func func, void *param1, void *param2); -typedef void (*CMTransport_fd_add_select)(CManager cm, int fd, select_list_func handler_func, +typedef void (*CMTransport_fd_add_select)(CManager cm, SOCKET fd, select_list_func handler_func, void *param1, void *param2); -typedef void (*CMTransport_fd_remove_select)(CManager cm, int fd); +typedef void (*CMTransport_fd_remove_select)(CManager cm, SOCKET fd); typedef void (*CMTransport_trace)(CManager cm, const char *format, ...); typedef void (*CMTransport_verbose)(CManager cm, CMTraceType trace, const char *format, ...); typedef CMConnection (*CMTransport_conn_create)(transport_entry trans, @@ -70,7 +79,7 @@ typedef CMbuffer (*CMTransport_create_data_buffer)(CManager cm, void *buffer, ss typedef int (*CMTransport_modify_global_lock)(CManager cm, const char *file, int line); typedef void (*CMTransport_add_buffer_to_pending_queue)(CManager cm, CMConnection conn, CMbuffer buf, long length); typedef void (*CMTransport_cond_wait_CM_lock)(CManager cm, void *cond, char *file, int line); -typedef void (*CMRemoveSelectFunc)(void *svcs, void *select_data, int fd); +typedef void (*CMRemoveSelectFunc)(void *svcs, void *select_data, SOCKET fd); typedef struct _periodic_task *periodic_task_handle; typedef periodic_task_handle (*CMAddPeriodicFunc) diff --git a/cm_util.c b/cm_util.c index a0d1ea0ec6..d6509555db 100644 --- a/cm_util.c +++ b/cm_util.c @@ -209,8 +209,8 @@ CMint_create_attr_list(CManager cm, char *file, int line) { attr_list list = create_attr_list(); (void)cm; - CMtrace_out(cm, CMAttrVerbose, "Creating attr list %lx at %s:%d\n", - (long)list, file, line); + CMtrace_out(cm, CMAttrVerbose, "Creating attr list %p at %s:%d\n", + list, file, line); return list; } @@ -219,8 +219,8 @@ CMint_free_attr_list(CManager cm, attr_list l, char *file, int line) { int count = attr_list_ref_count(l); (void)cm; - CMtrace_out(cm, CMAttrVerbose, "Freeing attr list %lx at %s:%d, ref count was %d\n", - (long)l, file, line, count); + CMtrace_out(cm, CMAttrVerbose, "Freeing attr list %p at %s:%d, ref count was %d\n", + l, file, line, count); free_attr_list(l); } @@ -232,8 +232,8 @@ CMint_add_ref_attr_list(CManager cm, attr_list l, char *file, int line) (void)cm; if (l == NULL) return NULL; count = attr_list_ref_count(l); - CMtrace_out(cm, CMAttrVerbose, "Adding ref attr list %lx at %s:%d, ref count now %d\n", - (long)l, file, line, count+1); + CMtrace_out(cm, CMAttrVerbose, "Adding ref attr list %p at %s:%d, ref count now %d\n", + l, file, line, count+1); return add_ref_attr_list(l); } @@ -242,8 +242,8 @@ CMint_attr_copy_list(CManager cm, attr_list l, char *file, int line) { attr_list ret = attr_copy_list(l); (void)cm; - CMtrace_out(cm, CMAttrVerbose, "Copy attr list %lx at %s:%d, new list %p\n", - (long)l, file, line, ret); + CMtrace_out(cm, CMAttrVerbose, "Copy attr list %p at %s:%d, new list %p\n", + l, file, line, ret); return ret; } @@ -262,26 +262,33 @@ CMint_decode_attr_from_xmit(CManager cm, void * buf, char *file, int line) { attr_list l = decode_attr_from_xmit(buf); (void)cm; - CMtrace_out(cm, CMAttrVerbose, "decode attr list from xmit at %s:%d, new list %lx\n", - file, line, (long)l); + CMtrace_out(cm, CMAttrVerbose, "decode attr list from xmit at %s:%d, new list %p\n", + file, line, l); return l; } +#undef realloc +#undef malloc extern void* -INT_CMrealloc(void *ptr, int size) +INT_CMrealloc(void *ptr, size_t size) { void *tmp = realloc(ptr, size); if ((tmp == 0) && (size != 0)) { - printf("Realloc failed on ptr %lx, size %d\n", (long)ptr, size); + printf("Realloc failed on ptr %p, size %zd\n", ptr, size); perror("realloc"); } return tmp; } extern void* -INT_CMmalloc(int size) +INT_CMmalloc(size_t size) { - return malloc(size); + void* tmp = malloc(size); + if ((tmp == 0) && (size != 0)) { + printf("Malloc failed on size %zd\n", size); + perror("malloc"); + } + return tmp; } extern void diff --git a/cmenet.c b/cmenet.c index d69af9c50b..3e04e45134 100644 --- a/cmenet.c +++ b/cmenet.c @@ -4,14 +4,119 @@ # pragma warning (disable: 1418) #endif +#undef NDEBUG +#ifdef HAVE_WINDOWS_H +#include +#include +#include +#include +#define getpid() _getpid() +#else +#include +#ifdef HAVE_SYS_TIME_H +#include +#endif +#ifdef HAVE_SYS_TIMES_H +#include +#endif +#include +#ifdef HAVE_SYS_SOCKIO_H +#include +#endif +#ifdef HAVE_SYS_SELECT_H +#include +#endif +#ifdef HAVE_SYS_UN_H +#include +#endif +#ifdef HAVE_SYS_UIO_H +#include +#endif +#ifdef HAVE_HOSTLIB_H +#include "hostLib.h" +#endif +#ifdef HAVE_STREAMS_UN_H +#include +#endif +#include +#include +#ifdef HAVE_NETDB_H +#include +#endif +#endif +#include +#include +#ifndef HAVE_WINDOWS_H +#include +#include +#include +#else +#include +#define drand48() (((double)rand())/((double)RAND_MAX)) +#define lrand48() rand() +#define srand48(x) +#include +#endif +#ifdef HAVE_UNISTD_H +#include +#endif #undef NDEBUG #include +#include #include #include -#include #include +#ifdef HAVE_MEMORY_H +#include +#endif + +#include +#include "evpath.h" +#include "cm_transport.h" +#include "ev_select.h" + +#ifndef _MSC_VER #include -#include +#define thr_mutex_t pthread_mutex_t +#define thr_thread_t pthread_t +#define thr_condition_t pthread_cond_t +#define thr_thread_self() pthread_self() +#define thr_thread_exit(status) pthread_exit(status); +#define thr_thread_detach(thread) pthread_detach(thread); +#define thr_thread_yield() sched_yield() +#define thr_thread_join(t, s) pthread_join(t, s) +#define thr_mutex_init(m) pthread_mutex_init(&m, NULL); +#define thr_mutex_lock(m) pthread_mutex_lock(&m); +#define thr_mutex_unlock(m) pthread_mutex_unlock(&m); +#define thr_mutex_free(m) pthread_mutex_destroy(&m); +#define thr_condition_init(c) pthread_cond_init(&c, NULL); +#define thr_condition_wait(c, m) pthread_cond_wait(&c, &m); +#define thr_condition_signal(c) pthread_cond_signal(&c); +#define thr_condition_broadcast(c) pthread_cond_broadcast(&c); +#define thr_condition_free(c) pthread_cond_destroy(&c); +#define thr_thread_create(w,x,y,z) pthread_create(w,x,y,z); +#else +//#include +#include +#define thr_mutex_t HANDLE +#define thr_thread_t DWORD +#define thr_condition_t HANDLE +#define thr_thread_create(w,x,y,z) 0 +#define thr_thread_self() GetCurrentThreadId() +#define thr_thread_exit(status) +#define thr_thread_detach(thread) +#define thr_thread_yield() +#define thr_thread_join(t, s) (void)s +#define thr_mutex_init(m) +#define thr_mutex_lock(m) +#define thr_mutex_unlock(m) +#define thr_mutex_free(m) +#define thr_condition_init(c) +#define thr_condition_wait(c, m) +#define thr_condition_signal(c) +#define thr_condition_broadcast(c) +#define thr_condition_free(c) +#endif #ifdef USE_ZPL_ENET #define ENET_IMPLEMENTATION @@ -83,18 +188,19 @@ extern void ZPLENETdummy() { // for warning suppression #define INTERFACE_NAME(NAME) libcmenet_LTX_ ## NAME #include #endif +#ifndef _MSC_VER #include +#endif #include +#ifdef HAVE_SYS_TIME_H #include +#endif #ifdef __MACH__ #include #include #endif -#include -#include "evpath.h" -#include "cm_transport.h" typedef struct _queued_data { @@ -120,7 +226,7 @@ typedef struct enet_client_data { int wake_read_fd; enet_uint32 last_host_service_zero_return; CMTaskHandle periodic_handle; - pthread_mutex_t enet_lock; + thr_mutex_t enet_lock; int enet_locked; struct enet_connection_data *pending_connections; } *enet_client_data_ptr; @@ -174,7 +280,7 @@ static void IntENET_lock(enet_client_data_ptr ecd, char *file, int line) { // if (file) printf("(PID %lx, TID %lx) Trying ENET Lock at %s, line %d\n", (long) getpid(), (long)gettid(), file, line); - pthread_mutex_lock(&ecd->enet_lock); + thr_mutex_lock(ecd->enet_lock); // if (file) printf("GOT ENET Lock at %s, line %d\n", file, line); ecd->enet_locked++; } @@ -184,7 +290,7 @@ IntENET_unlock(enet_client_data_ptr ecd, char *file, int line) { // if (file) printf("(PID %lx, TID %lx) ENET Unlock at %s, line %d\n", (long) getpid(), (long)gettid(), file, line); ecd->enet_locked--; - pthread_mutex_unlock(&ecd->enet_lock); + thr_mutex_unlock(ecd->enet_lock); } static int @@ -243,7 +349,7 @@ handle_packet(CManager cm, CMtrans_services svc, transport_entry trans, enet_con CMbuffer cb; svc->trace_out(cm, "A packet of length %u was received.\n", (unsigned int) packet->dataLength); - econn_d->read_buffer_len = packet->dataLength; + econn_d->read_buffer_len = (int) packet->dataLength; cb = svc->create_data_and_link_buffer(cm, packet->data, econn_d->read_buffer_len); @@ -504,7 +610,7 @@ enet_accept_conn(enet_client_data_ptr ecd, transport_entry trans, svc->trace_out(trans->cm, "Accepted ENET RUDP connection from UNKNOWN host"); } add_attr(conn_attr_list, CM_PEER_LISTEN_PORT, Attr_Int4, - (attr_value) (long)enet_conn_data->remote_contact_port); + (attr_value) (intptr_t)enet_conn_data->remote_contact_port); #ifndef USE_IPV6 struct in_addr addr; addr.s_addr = htonl(enet_conn_data->remote_IP); @@ -560,14 +666,14 @@ enet_initiate_conn(CManager cm, CMtrans_services svc, transport_entry trans, } if (!query_attr(attrs, CM_ENET_HOSTNAME, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & host_name)) { + /* value pointer */ (attr_value *)(intptr_t) & host_name)) { svc->trace_out(cm, TPORT " transport found no CM_ENET_HOSTNAME attribute"); host_name = NULL; } else { svc->trace_out(cm, TPORT " transport connect to host %s", host_name); } if (!query_attr(attrs, CM_ENET_ADDR, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & host_ip)) { + /* value pointer */ (attr_value *)(intptr_t) & host_ip)) { svc->trace_out(cm, "CMEnet transport found no CM_ENET_ADDR attribute"); /* wasn't there */ host_ip = 0; @@ -581,7 +687,7 @@ enet_initiate_conn(CManager cm, CMtrans_services svc, transport_entry trans, } if (!query_attr(attrs, CM_ENET_PORT, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & int_port_num)) { + /* value pointer */ (attr_value *)(intptr_t) & int_port_num)) { svc->trace_out(cm, "CMEnet transport found no CM_ENET_PORT attribute"); return 0; } else { @@ -589,13 +695,13 @@ enet_initiate_conn(CManager cm, CMtrans_services svc, transport_entry trans, } if (!query_attr(attrs, CM_ENET_CONN_TIMEOUT, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & timeout)) { + /* value pointer */ (attr_value *)(intptr_t) & timeout)) { svc->trace_out(cm, "CMEnet transport found no CM_ENET_CONN_TIMEOUT attribute"); } else { svc->trace_out(cm, "CMEnet transport connection timeout set to %d msecs", timeout); } if (!query_attr(attrs, CM_ENET_CONN_REUSE, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & conn_reuse)) { + /* value pointer */ (attr_value *)(intptr_t) & conn_reuse)) { svc->trace_out(cm, "CMEnet transport found no CM_ENET_CONN_REUSE attribute"); } else { svc->trace_out(cm, "CMEnet transport connection reuse set to %d", conn_reuse); @@ -750,7 +856,7 @@ INTERFACE_NAME(finalize_conn_nonblocking)(CManager cm, CMtrans_services svc, } add_attr(conn_attr_list, CM_PEER_LISTEN_PORT, Attr_Int4, - (attr_value) (long)final_conn_data->remote_contact_port); + (attr_value) (intptr_t)final_conn_data->remote_contact_port); conn = svc->connection_create(trans, final_conn_data, conn_attr_list); final_conn_data->conn = conn; free_attr_list(conn_attr_list); @@ -792,18 +898,18 @@ INTERFACE_NAME(self_check)(CManager cm, CMtrans_services svc, IP = ntohl(INADDR_LOOPBACK); } if (!query_attr(attrs, CM_ENET_HOSTNAME, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & host_name)) { + /* value pointer */ (attr_value *)(intptr_t) & host_name)) { svc->trace_out(cm, "CMself check CMEnet transport found no CM_ENET_HOSTNAME attribute"); host_name = NULL; } if (!query_attr(attrs, CM_ENET_ADDR, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & host_addr)) { + /* value pointer */ (attr_value *)(intptr_t) & host_addr)) { svc->trace_out(cm, "CMself check CMEnet transport found no CM_ENET_ADDR attribute"); if (host_name == NULL) return 0; host_addr = 0; } if (!query_attr(attrs, CM_ENET_PORT, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & int_port_num)) { + /* value pointer */ (attr_value *)(intptr_t) & int_port_num)) { svc->trace_out(cm, "CMself check CMEnet transport found no CM_ENET_PORT attribute"); return 0; } @@ -842,16 +948,16 @@ INTERFACE_NAME(connection_eq)(CManager cm, CMtrans_services svc, (void) trans; if (!query_attr(attrs, CM_ENET_HOSTNAME, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & host_name)) { + /* value pointer */ (attr_value *)(intptr_t) & host_name)) { svc->trace_out(cm, "CMEnet transport found no CM_ENET_HOST attribute"); } if (!query_attr(attrs, CM_ENET_PORT, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & int_port_num)) { + /* value pointer */ (attr_value *)(intptr_t) & int_port_num)) { svc->trace_out(cm, "Conn Eq CMenet transport found no CM_ENET_PORT attribute"); return 0; } if (!query_attr(attrs, CM_ENET_ADDR, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & requested_IP)) { + /* value pointer */ (attr_value *)(intptr_t) & requested_IP)) { svc->trace_out(cm, "CMENET transport found no CM_ENET_ADDR attribute"); } if (requested_IP == -1) { @@ -912,7 +1018,7 @@ build_listen_attrs(CManager cm, CMtrans_services svc, enet_client_data_ptr ecd, } if ((IP != 0) && !use_hostname) { add_attr(ret_list, CM_ENET_ADDR, Attr_Int4, - (attr_value) (long)IP); + (attr_value) (intptr_t)IP); } if ((getenv("CMEnetsUseHostname") != NULL) || use_hostname) { @@ -922,7 +1028,7 @@ build_listen_attrs(CManager cm, CMtrans_services svc, enet_client_data_ptr ecd, add_int_attr(ret_list, CM_ENET_ADDR, INADDR_LOOPBACK); } add_attr(ret_list, CM_ENET_PORT, Attr_Int4, - (attr_value) (long)int_port_num); + (attr_value) (intptr_t)int_port_num); add_attr(ret_list, CM_TRANSPORT, Attr_String, (attr_value) strdup(TRANSPORT_STRING)); @@ -972,7 +1078,7 @@ INTERFACE_NAME(non_blocking_listen)(CManager cm, CMtrans_services svc, */ if (listen_info != NULL && !query_attr(listen_info, CM_ENET_PORT, - NULL, (attr_value *)(long) & attr_port_num)) { + NULL, (attr_value *)(intptr_t) & attr_port_num)) { port_num = 0; } else { if (attr_port_num > USHRT_MAX || attr_port_num < 0) { @@ -1042,17 +1148,16 @@ INTERFACE_NAME(non_blocking_listen)(CManager cm, CMtrans_services svc, svc->trace_out(cm, "CMEnet is listening on port %d\n", address.port); } else { /* specified port range */ - long seedval = time(NULL) + getpid(); /* port num is free. Constrain to range 26000 : 26100 */ int size; int tries; - srand48(seedval); + srand48(time(NULL) + getpid()); restart: size = high_bound - low_bound; tries = 10; while (tries > 0) { - int target = low_bound + size * drand48(); + int target = low_bound + (int)(size * drand48()); address.port = target; svc->trace_out(cm, "CMEnet trying to bind port %d", target); @@ -1206,7 +1311,7 @@ INTERFACE_NAME(writev_func)(CMtrans_services svc, enet_conn_data_ptr ecd, wake_enet_server_thread(ecd->ecd); - return iovcnt; + return (int)iovcnt; } @@ -1244,6 +1349,159 @@ shutdown_enet_thread } } +#ifdef HAVE_WINDOWS_H +static char* +WSAerror_str(err) +int err; +{ + switch(err) { + case WSAEINTR: return "WSAEINTR"; + case WSAEBADF: return "WSAEBADF"; + case WSAEACCES: return "WSAEACCES"; + case WSAEFAULT: return "WSAEFAULT"; + case WSAEINVAL: return "WSAEINVAL"; + case WSAEMFILE: return "WSAEMFILE"; + case WSAEWOULDBLOCK: return "WSAEWOULDBLOCK"; + case WSAEINPROGRESS: return "WSAEINPROGRESS"; + case WSAEALREADY: return "WSAEALREADY"; + case WSAENOTSOCK: return "WSAENOTSOCK"; + case WSAEDESTADDRREQ: return "WSAEDESTADDRREQ"; + case WSAEMSGSIZE: return "WSAEMSGSIZE"; + case WSAEPROTOTYPE: return "WSAEPROTOTYPE"; + case WSAENOPROTOOPT: return "WSAENOPROTOOPT"; + case WSAEPROTONOSUPPORT: return "WSAEPROTONOSUPPORT"; + case WSAESOCKTNOSUPPORT: return "WSAESOCKTNOSUPPORT"; + case WSAEOPNOTSUPP: return "WSAEOPNOTSUPP"; + case WSAEPFNOSUPPORT: return "WSAEPFNOSUPPORT"; + case WSAEAFNOSUPPORT: return "WSAEAFNOSUPPORT"; + case WSAEADDRINUSE: return "WSAEADDRINUSE"; + case WSAEADDRNOTAVAIL: return "WSAEADDRNOTAVAIL"; + case WSAENETDOWN: return "WSAENETDOWN"; + case WSAENETUNREACH: return "WSAENETUNREACH"; + case WSAENETRESET: return "WSAENETRESET"; + case WSAECONNABORTED: return "WSAECONNABORTED"; + case WSAECONNRESET: return "WSAECONNRESET"; + case WSAENOBUFS: return "WSAENOBUFS"; + case WSAEISCONN: return "WSAEISCONN"; + case WSAENOTCONN: return "WSAENOTCONN"; + case WSAESHUTDOWN: return "WSAESHUTDOWN"; + case WSAETOOMANYREFS: return "WSAETOOMANYREFS"; + case WSAETIMEDOUT: return "WSAETIMEDOUT"; + case WSAECONNREFUSED: return "WSAECONNREFUSED"; + case WSAELOOP: return "WSAELOOP"; + case WSAENAMETOOLONG: return "WSAENAMETOOLONG"; + case WSAEHOSTDOWN: return "WSAEHOSTDOWN"; + case WSAEHOSTUNREACH: return "WSAEHOSTUNREACH"; + case WSAENOTEMPTY: return "WSAENOTEMPTY"; + case WSAEPROCLIM: return "WSAEPROCLIM"; + case WSAEUSERS: return "WSAEUSERS"; + case WSAEDQUOT: return "WSAEDQUOT"; + case WSAESTALE: return "WSAESTALE"; + case WSAEREMOTE: return "WSAEREMOTE"; + case WSAEDISCON: return "WSAEDISCON"; + case WSASYSNOTREADY: return "WSASYSNOTREADY"; + case WSAVERNOTSUPPORTED: return "WSAVERNOTSUPPORTED"; + case WSANOTINITIALISED: return "WSANOTINITIALISED"; + default: return "Unknown Winsock error"; + } +} +/* + * Note. Unfortunately, the _pipe() function on WinNT + * produces FDs that you can't use in select(). This ruins what we want + * this pipe for, which is to wake up a thread sleeping in select(). + * So, we need to introduce a pipe function that returns two socket FDs. + * NT Sux. + */ + +int +pipe(filedes) +SOCKET filedes[2]; +{ + + int length; + struct sockaddr_in sock_addr; + int sock_opt_val = 1; + SOCKET sock1, sock2, conn_sock; + unsigned long block = TRUE; + int delay_value = 1; + + conn_sock = socket(AF_INET, SOCK_STREAM, 0); + if (conn_sock == SOCKET_ERROR) { + fprintf(stderr, "Cannot open INET socket\n"); + return -1; + } + sock_addr.sin_family = PF_INET; + sock_addr.sin_addr.s_addr = INADDR_ANY; + sock_addr.sin_port = 0; + if (bind(conn_sock, (struct sockaddr *) &sock_addr, + sizeof sock_addr) == SOCKET_ERROR) { + fprintf(stderr, "Cannot bind INET socket\n"); + return -1; + } + length = sizeof sock_addr; + if (getsockname(conn_sock, (struct sockaddr *) &sock_addr, &length) < 0) { + fprintf(stderr, "Cannot get socket name\n"); + return -1; + } + /* begin listening for conns */ + if (listen(conn_sock, FD_SETSIZE)) { + fprintf(stderr, "listen failed\n"); + return -1; + } + +/* send sock */ + if ((sock1 = socket(AF_INET, SOCK_STREAM, 0)) == SOCKET_ERROR) { + return -1; + } + sock_addr.sin_addr.s_addr = 0x0100007f; /* loopback */ + sock_addr.sin_family = PF_INET; + if (ioctlsocket(sock1, FIONBIO, &block) != 0) { + printf("ioctl failed\n"); + } + if (connect(sock1, (struct sockaddr *) &sock_addr, + sizeof sock_addr) == SOCKET_ERROR) { + int err = WSAGetLastError(); + if (err != WSAEWOULDBLOCK) { + printf("unexpected error from connect, %s\n", WSAerror_str(err)); + } + } + + if ((sock2 = accept(conn_sock, (struct sockaddr *) 0, (int *) 0)) == SOCKET_ERROR) { + int err = WSAGetLastError(); + printf("err was %s\n", WSAerror_str(err)); + } + + setsockopt(sock2, IPPROTO_TCP, TCP_NODELAY, (char *) &delay_value, + sizeof(delay_value)); + { + fd_set stXcptFDS,stWriteFDS; + struct timeval stTimeOut; /* for select() timeout (none) */ + int wRet; + + EVPATH_FD_ZERO((fd_set FAR*)&(stXcptFDS)); + EVPATH_FD_ZERO((fd_set FAR*)&(stWriteFDS)); + FD_SET(sock1, (fd_set FAR*)&(stWriteFDS)); + FD_SET(sock1, (fd_set FAR*)&(stXcptFDS)); + stTimeOut.tv_sec = 10; + stTimeOut.tv_usec = 0; + wRet = select(-1, NULL, + (fd_set FAR*)&(stWriteFDS), + (fd_set FAR*)&(stXcptFDS), + NULL); + if (wRet == SOCKET_ERROR) { + int err = WSAGetLastError(); + printf("err was %s\n", WSAerror_str(err)); + } + } + setsockopt(sock1, IPPROTO_TCP, TCP_NODELAY, (char *) &delay_value, + sizeof(delay_value)); + + filedes[0] = sock1; + filedes[1] = sock2; + return 0; +} +#endif + #ifdef __cplusplus extern "C" #else @@ -1289,7 +1547,7 @@ INTERFACE_NAME(initialize)(CManager cm, CMtrans_services svc, } enet_data = (enet_client_data_ptr) svc->malloc_func(sizeof(struct enet_client_data)); memset(enet_data, 0, sizeof(struct enet_client_data)); - pthread_mutex_init(&enet_data->enet_lock, NULL); + thr_mutex_init(enet_data->enet_lock); enet_data->enet_locked = 0; enet_data->cm = cm; enet_data->hostname = NULL; diff --git a/cmepoll.c b/cmepoll.c index 2d42ffa55a..57951c177d 100644 --- a/cmepoll.c +++ b/cmepoll.c @@ -3,8 +3,8 @@ #include #ifdef HAVE_WINDOWS_H +#include #include -#include #include #define getpid() _getpid() #else diff --git a/cmib.c b/cmib.c index d9f9b0c922..0100083b6d 100644 --- a/cmib.c +++ b/cmib.c @@ -3,8 +3,8 @@ #include #ifdef HAVE_WINDOWS_H +#include #include -#include #define getpid() _getpid() #else #include diff --git a/cmmulticast.c b/cmmulticast.c index d80b4bfb3b..82fdec1075 100644 --- a/cmmulticast.c +++ b/cmmulticast.c @@ -3,9 +3,11 @@ #include #ifdef HAVE_WINDOWS_H +#include +#include #include -#include #define getpid() _getpid() +#define close(x) closesocket(x) #else #ifdef HAVE_SYS_TIME_H #include @@ -95,8 +97,8 @@ typedef struct multicast_transport_data { typedef struct mcast_connection_data { int mcast_IP; int mcast_port; - int input_fd; - int output_fd; + SOCKET input_fd; + SOCKET output_fd; struct sockaddr_in output_addr; struct sockaddr_in my_addr; char read_buffer[MSGBUFSIZE]; @@ -106,11 +108,7 @@ typedef struct mcast_connection_data { multicast_transport_data_ptr mtd; } *mcast_conn_data_ptr; -#ifdef WSAEWOULDBLOCK -#define EWOULDBLOCK WSAEWOULDBLOCK -#define EAGAIN WSAEINPROGRESS -#define EINTR WSAEINTR -#define errno GetLastError() +#ifdef _MSC_VER #define read(fd, buf, len) recv(fd, buf, len, 0) #define write(fd, buf, len) send(fd, buf, len, 0) #endif @@ -183,11 +181,11 @@ libcmmulticast_LTX_shutdown_conn(CMtrans_services svc, mcast_conn_data_ptr mcd) #include "qual_hostname.c" -static int +static SOCKET initiate_conn(CManager cm, CMtrans_services svc, transport_entry trans, attr_list attrs, mcast_conn_data_ptr mcast_conn_data, attr_list conn_attr_list, int no_more_redirect) { int one = 1; - int input_fd, output_fd; + SOCKET input_fd, output_fd; int int_port_num; u_short port_num; multicast_transport_data_ptr mtd = (multicast_transport_data_ptr) trans->trans_data; @@ -199,7 +197,7 @@ initiate_conn(CManager cm, CMtrans_services svc, transport_entry trans, attr_lis (void) no_more_redirect; if (!query_attr(attrs, CM_MCAST_ADDR, /* type pointer */ NULL, - /* value pointer */ (attr_value *) (long) &mcast_ip)) { + /* value pointer */ (attr_value *) (intptr_t) &mcast_ip)) { svc->trace_out(cm, "CMMulticast transport found no MCAST_ADDR attribute"); /* wasn't there */ mcast_ip = 0; @@ -210,7 +208,7 @@ initiate_conn(CManager cm, CMtrans_services svc, transport_entry trans, attr_lis return -1; if (!query_attr(attrs, CM_MCAST_PORT, /* type pointer */ NULL, - /* value pointer */ (attr_value *) (long) &int_port_num)) { + /* value pointer */ (attr_value *) (intptr_t) &int_port_num)) { svc->trace_out(cm, "CMMulticast transport found no MCAST_PORT attribute"); return -1; } else { @@ -246,7 +244,7 @@ initiate_conn(CManager cm, CMtrans_services svc, transport_entry trans, attr_lis /* use setsockopt() to request that the kernel join a multicast group */ mreq.imr_multiaddr.s_addr = htonl(mcast_ip); mreq.imr_interface.s_addr = htonl(INADDR_ANY); - if (setsockopt(input_fd, IPPROTO_IP, IP_ADD_MEMBERSHIP, &mreq, sizeof(mreq)) < 0) { + if (setsockopt(input_fd, IPPROTO_IP, IP_ADD_MEMBERSHIP, (const char*) & mreq, sizeof(mreq)) < 0) { perror("setsockopt"); exit(1); } @@ -320,7 +318,7 @@ libcmmulticast_LTX_initiate_conn(CManager cm,CMtrans_services svc, transport_ent mcast_conn_data_ptr mcast_conn_data = create_mcast_conn_data(svc); attr_list conn_attr_list = create_attr_list(); CMConnection conn; - int sock; + SOCKET sock; if ((sock = initiate_conn(cm, svc, trans, attrs, mcast_conn_data, conn_attr_list, 0)) < 0) return NULL; @@ -354,12 +352,12 @@ libcmmulticast_LTX_connection_eq(CManager cm, CMtrans_services svc, transport_en int requested_IP = -1; if (!query_attr(attrs, CM_MCAST_PORT, /* type pointer */ NULL, - /* value pointer */ (attr_value *) (long) &int_port_num)) { + /* value pointer */ (attr_value *) (intptr_t) &int_port_num)) { svc->trace_out(cm, "Conn Eq CMMulticast transport found no MCAST_PORT attribute"); return 0; } if (!query_attr(attrs, CM_MCAST_ADDR, /* type pointer */ NULL, - /* value pointer */ (attr_value *) (long) &requested_IP)) { + /* value pointer */ (attr_value *) (intptr_t) &requested_IP)) { svc->trace_out(cm, "CMMulticast transport found no MCAST_ADDR attribute"); } svc->trace_out(cm, "CMMulticast Conn_eq comparing IP/ports %x/%d and %x/%d", @@ -376,11 +374,7 @@ libcmmulticast_LTX_connection_eq(CManager cm, CMtrans_services svc, transport_en extern attr_list -libcmmulticast_LTX_non_blocking_listen(cm, svc, trans, listen_info) -CManager cm; -CMtrans_services svc; -transport_entry trans; -attr_list listen_info; +libcmmulticast_LTX_non_blocking_listen(CManager cm, CMtrans_services svc, transport_entry trans, attr_list listen_info) { /* meaningless in muticast */ return NULL; @@ -404,11 +398,7 @@ struct iovec { * that are more efficient if they allocate their own buffer space. */ extern void * -libcmmulticast_LTX_read_func(svc, mcd, requested_len, actual_len) -CMtrans_services svc; -mcast_conn_data_ptr mcd; -int requested_len; -int *actual_len; +libcmmulticast_LTX_read_func(CMtrans_services svc, mcast_conn_data_ptr mcd, int requested_len, int *actual_len) { char *ret = &mcd->read_buffer[mcd->read_pointer]; *actual_len = requested_len; @@ -420,16 +410,16 @@ int *actual_len; /* this is not defined in some places where it should be. Conservative. */ #define IOV_MAX 16 #endif - +#ifdef _MSC_VER +#define msghdr _WSAMSG +#include +#endif extern int -libcmmulticast_LTX_writev_func(svc, mcd, iov, iovcnt, attrs) -CMtrans_services svc; -mcast_conn_data_ptr mcd; -struct iovec *iov; -int iovcnt; -attr_list attrs; +libcmmulticast_LTX_writev_func(CMtrans_services svc, mcast_conn_data_ptr mcd, struct iovec *iov, int iovcnt, attr_list attrs) { - int fd = mcd->output_fd; + SOCKET fd = mcd->output_fd; +#ifndef _MSC_VER + // no real equivalent on windows struct sockaddr_in addr = mcd->output_addr; struct msghdr msg; svc->trace_out(mcd->mtd->cm, "CMMcast writev of %d vectors on fd %d", @@ -443,6 +433,7 @@ attr_list attrs; perror("write sendmsg"); exit(1); } +#endif if (mcd->my_addr.sin_port == 0) { unsigned int nl; int IP = get_self_ip_addr(NULL, svc); @@ -472,9 +463,7 @@ free_mcast_data(CManager cm, void *mtdv) } extern void * -libcmmulticast_LTX_initialize(cm, svc) -CManager cm; -CMtrans_services svc; +libcmmulticast_LTX_initialize(CManager cm, CMtrans_services svc) { static int atom_init = 0; diff --git a/cmprobe.c b/cmprobe.c index 9a5c8932fb..90cdcc1d56 100644 --- a/cmprobe.c +++ b/cmprobe.c @@ -9,11 +9,12 @@ #include #include "evpath.h" #include +#ifdef _MSC_VER +#define sleep(x) Sleep(x*1000) +#endif int -main(argc, argv) - int argc; - char **argv; +main(int argc, char **argv) { CManager cm; CMConnection conn = NULL; diff --git a/cmselect.c b/cmselect.c index dcb4727635..36a6a6265a 100644 --- a/cmselect.c +++ b/cmselect.c @@ -3,10 +3,9 @@ #include #ifdef HAVE_WINDOWS_H +#include #include -#include #include -#define getpid() _getpid() #else #ifdef HAVE_SYS_TIME_H #include @@ -48,16 +47,48 @@ #ifdef HAVE_MEMORY_H #include #endif +#ifdef HAVE_PTHREAD_H +#include +#endif +#ifdef HAVE_SCHED_H +#include +#endif #include #include "evpath.h" #include "cm_transport.h" +#include "cm_internal.h" #include "ev_select.h" -#include -#include -#define thr_thread_t pthread_t -#define thr_thread_self() pthread_self() -#define thr_thread_yield() sched_yield() +#ifdef _MSC_VER +#define getpid() _getpid() +#define close(x) closesocket(x) +#endif +#undef realloc +#undef malloc + +extern void* +select_realloc(void* ptr, size_t size) +{ + void* tmp = realloc(ptr, size); + if ((tmp == 0) && (size != 0)) { + printf("Realloc failed on ptr %p, size %zd\n", ptr, size); + perror("realloc"); + } + return tmp; +} + +extern void* +select_malloc(size_t size) +{ + void* tmp = malloc(size); + if ((tmp == 0) && (size != 0)) { + printf("Malloc failed on size %zd\n", size); + perror("malloc"); + } + return tmp; +} +#define realloc(ptr, size) select_realloc(ptr, size) +#define malloc(size) select_malloc(size) #ifndef SOCKET_ERROR #define SOCKET_ERROR -1 @@ -107,14 +138,13 @@ static WORD wVersionRequested = MAKEWORD(1, 1); static WSADATA wsaData; int nErrorStatus; static char*WSAerror_str(int err); +#ifndef FD_SETSIZE #define FD_SETSIZE 1024 #endif +#endif static void -init_select_data(svc, sdp, cm) -CMtrans_services svc; -select_data_ptr *sdp; -CManager cm; +init_select_data(CMtrans_services svc, select_data_ptr *sdp, CManager cm) { select_data_ptr sd = malloc(sizeof(struct select_data)); *sdp = sd; @@ -122,7 +152,7 @@ CManager cm; EVPATH_FD_ZERO((fd_set *) sd->fdset); sd->write_set = svc->malloc_func(sizeof(fd_set)); EVPATH_FD_ZERO((fd_set *) sd->write_set); - sd->server_thread = (thr_thread_t) NULL; + sd->server_thread = (thr_thread_t)(intptr_t) NULL; sd->closed = 0; sd->sel_item_max = 0; sd->select_items = (FunctionListElement *) svc->malloc_func(sizeof(FunctionListElement)); @@ -157,9 +187,7 @@ typedef struct _periodic_task { } task_handle_s; static void -free_select_data(svc, sdp) -CMtrans_services svc; -select_data_ptr *sdp; +free_select_data(CMtrans_services svc, select_data_ptr *sdp) { periodic_task_handle tasks; select_data_ptr sd = *sdp; @@ -186,10 +214,7 @@ select_data_ptr *sdp; ((tvp)->tv_usec cmp (uvp)->tv_usec)))) static void -set_soonest_timeout(timeout, task_list, now) -struct timeval *timeout; -periodic_task_handle task_list; -struct timeval now; +set_soonest_timeout(struct timeval *timeout, periodic_task_handle task_list, struct timeval now) { struct timeval this_delay; if (task_list == NULL) return; @@ -212,10 +237,7 @@ struct timeval now; } static void -increment_time(time, increment_sec, increment_usec) -struct timeval *time; -int increment_sec; -int increment_usec; +increment_time(struct timeval *time, int increment_sec, int increment_usec) { time->tv_usec += increment_usec; time->tv_sec += increment_sec; @@ -229,11 +251,7 @@ static void shutdown_wake_mechanism(select_data_ptr sd); static void -socket_select(svc, sd, timeout_sec, timeout_usec) -CMtrans_services svc; -select_data_ptr sd; -int timeout_sec; -int timeout_usec; +socket_select(CMtrans_services svc, select_data_ptr sd, int timeout_sec, int timeout_usec) { int i, res; fd_set rd_set, wr_set; @@ -241,7 +259,7 @@ int timeout_usec; int tmp_select_consistency_number = sd->select_consistency_number; if (sd->closed) { - sd->server_thread = (thr_thread_t) NULL; + sd->server_thread = (thr_thread_t)(intptr_t) NULL; return; } @@ -249,7 +267,7 @@ int timeout_usec; /* assert CM is locked */ assert(CM_LOCKED(svc, sd->cm)); } - if (sd->server_thread == (thr_thread_t) NULL) { + if (sd->server_thread == (thr_thread_t)(intptr_t) NULL) { /* no server thread set, must be this one */ sd->server_thread = thr_thread_self(); } @@ -272,7 +290,7 @@ int timeout_usec; */ struct _timeb nowb; _ftime(&nowb); - now.tv_sec = nowb.time; + now.tv_sec = (long)nowb.time; now.tv_usec = nowb.millitm * 1000; #endif if (timeout_usec >= 1000000) { @@ -302,7 +320,7 @@ int timeout_usec; ACQUIRE_CM_LOCK(svc, sd->cm); } if (sd->closed) { - sd->server_thread = (thr_thread_t) NULL; + sd->server_thread = (thr_thread_t)(intptr_t) NULL; return; } #ifndef HAVE_WINDOWS_H @@ -380,7 +398,7 @@ int timeout_usec; if (errno_val == WSAEINTR || errno_val == WSAEINVAL) { return; } else { - fprintf(stderr, "select failed, errno %d\n", + fprintf(stderr, "select failed, errno %s\n", WSAerror_str(errno_val)); } return; @@ -421,7 +439,7 @@ int timeout_usec; if (res != 0) { for (i = 0; i <= sd->sel_item_max; i++) { if (sd->closed) { - sd->server_thread = (thr_thread_t) NULL; + sd->server_thread = (thr_thread_t)(intptr_t) NULL; return; } if (FD_ISSET(i, &wr_set)) { @@ -468,7 +486,7 @@ int timeout_usec; */ struct _timeb nowb; _ftime(&nowb); - now.tv_sec = nowb.time; + now.tv_sec = (long) nowb.time; now.tv_usec = nowb.millitm * 1000; #endif while (this_periodic_task != NULL ) { @@ -509,13 +527,7 @@ int timeout_usec; } extern void -libcmselect_LTX_add_select(svc, sdp, fd, func, arg1, arg2) -CMtrans_services svc; -select_data_ptr *sdp; -int fd; -select_list_func func; -void *arg1; -void *arg2; +libcmselect_LTX_add_select(CMtrans_services svc, select_data_ptr *sdp, int fd, select_list_func func, void *arg1, void *arg2) { select_data_ptr sd = *((select_data_ptr *)sdp); if (sd->cm) { @@ -567,13 +579,7 @@ void *arg2; } extern void -libcmselect_LTX_write_select(svc, sdp, fd, func, arg1, arg2) -CMtrans_services svc; -select_data_ptr *sdp; -int fd; -select_list_func func; -void *arg1; -void *arg2; +libcmselect_LTX_write_select(CMtrans_services svc, select_data_ptr *sdp, int fd, select_list_func func, void *arg1, void *arg2) { select_data_ptr sd = *((select_data_ptr *)sdp); if (sd == NULL) { @@ -630,15 +636,7 @@ void *arg2; } extern periodic_task_handle -libcmselect_LTX_add_periodic(svc, sdp, interval_sec, interval_usec, - func, arg1, arg2) -CMtrans_services svc; -select_data_ptr *sdp; -int interval_sec; -int interval_usec; -select_list_func func; -void *arg1; -void *arg2; +libcmselect_LTX_add_periodic(CMtrans_services svc, select_data_ptr *sdp, int interval_sec, int interval_usec, select_list_func func, void *arg1, void *arg2) { select_data_ptr sd = *((select_data_ptr *)sdp); periodic_task_handle handle = malloc(sizeof(struct _periodic_task)); @@ -663,7 +661,7 @@ void *arg2; { struct _timeb nowb; _ftime(&nowb); - handle->next_time.tv_sec = nowb.time; + handle->next_time.tv_sec = (long)nowb.time; handle->next_time.tv_usec = nowb.millitm * 1000; } #endif @@ -685,15 +683,7 @@ void *arg2; extern periodic_task_handle -libcmselect_LTX_add_delayed_task(svc, sdp, delay_sec, delay_usec, - func, arg1, arg2) -CMtrans_services svc; -select_data_ptr *sdp; -int delay_sec; -int delay_usec; -select_list_func func; -void *arg1; -void *arg2; +libcmselect_LTX_add_delayed_task(CMtrans_services svc, select_data_ptr *sdp, int delay_sec, int delay_usec, select_list_func func, void *arg1, void *arg2) { select_data_ptr sd = *((select_data_ptr *)sdp); periodic_task_handle handle = malloc(sizeof(struct _periodic_task)); @@ -718,8 +708,8 @@ void *arg2; */ struct _timeb nowb; _ftime(&nowb); - handle->next_time.tv_sec = nowb.time; - handle->next_time.tv_usec = nowb.millitm * 1000; + handle->next_time.tv_sec = (long)nowb.time; + handle->next_time.tv_usec = (long)(nowb.millitm * 1000); } #endif increment_time(&handle->next_time, delay_sec, delay_usec); @@ -739,9 +729,7 @@ void *arg2; } static int -remove_periodic_task(sd, handle) -select_data_ptr sd; -periodic_task_handle handle; +remove_periodic_task(select_data_ptr sd, periodic_task_handle handle) { periodic_task_handle list, last = NULL; list = sd->periodic_task_list; @@ -779,10 +767,7 @@ periodic_task_handle handle; extern void -libcmselect_LTX_remove_periodic(svc, sdp, handle) -CMtrans_services svc; -select_data_ptr *sdp; -periodic_task_handle handle; +libcmselect_LTX_remove_periodic(CMtrans_services svc, select_data_ptr *sdp, periodic_task_handle handle) { select_data_ptr sd = *((select_data_ptr *)sdp); if (sd == NULL) return; @@ -792,10 +777,7 @@ periodic_task_handle handle; } extern void -libcmselect_LTX_remove_select(svc, sdp, fd) -CMtrans_services svc; -select_data_ptr *sdp; -int fd; +libcmselect_LTX_remove_select(CMtrans_services svc, select_data_ptr *sdp, int fd) { select_data_ptr sd = *((select_data_ptr *)sdp); if (sd == NULL) { @@ -811,8 +793,7 @@ int fd; } static void -shutdown_wake_mechanism(sd) -select_data_ptr sd; +shutdown_wake_mechanism(select_data_ptr sd) { if (sd->wake_read_fd == -1) return; close(sd->wake_read_fd); @@ -820,12 +801,10 @@ select_data_ptr sd; sd->wake_read_fd = sd->wake_write_fd = -1; } -static void read_wake_fd(fd_as_ptr, junk) -void *fd_as_ptr; -void *junk; +static void read_wake_fd(void *fd_as_ptr, void *junk) { char buffer; - int fd = (int) (long)fd_as_ptr; + SOCKET fd = (SOCKET) (intptr_t)fd_as_ptr; #ifdef HAVE_WINDOWS_H recv(fd, &buffer, 1, 0); #else @@ -901,13 +880,13 @@ int err; int pipe(filedes) -int filedes[2]; +SOCKET filedes[2]; { int length; struct sockaddr_in sock_addr; int sock_opt_val = 1; - int sock1, sock2, conn_sock; + SOCKET sock1, sock2, conn_sock; unsigned long block = TRUE; int delay_value = 1; @@ -989,9 +968,7 @@ int filedes[2]; #endif static void -setup_wake_mechanism(svc, sdp) -CMtrans_services svc; -select_data_ptr *sdp; +setup_wake_mechanism(CMtrans_services svc, select_data_ptr *sdp) { int filedes[2]; @@ -1010,13 +987,11 @@ select_data_ptr *sdp; svc->verbose(sd->cm, CMSelectVerbose, "CMSelect Adding read_wake_fd as action on fd %d", sd->wake_read_fd); libcmselect_LTX_add_select(svc, sdp, sd->wake_read_fd, read_wake_fd, - (void*)(long)sd->wake_read_fd, NULL); + (void*)(intptr_t)sd->wake_read_fd, NULL); } extern void -libcmselect_LTX_wake_function(svc, sdp) -CMtrans_services svc; -select_data_ptr *sdp; +libcmselect_LTX_wake_function(CMtrans_services svc, select_data_ptr *sdp) { if (*sdp != NULL) { wake_server_thread(*sdp); @@ -1024,8 +999,7 @@ select_data_ptr *sdp; } static void -wake_server_thread(sd) -select_data_ptr sd; +wake_server_thread(select_data_ptr sd) { static char buffer = 'W'; /* doesn't matter what we write */ if (sd->wake_write_fd != -1) { @@ -1040,9 +1014,7 @@ select_data_ptr sd; } extern void -libcmselect_LTX_blocking_function(svc, client_data) -CMtrans_services svc; -void *client_data; +libcmselect_LTX_blocking_function(CMtrans_services svc, void *client_data) { select_data_ptr sd = *((select_data_ptr *)client_data); if (sd == NULL) { @@ -1057,9 +1029,7 @@ void *client_data; } extern void -libcmselect_LTX_polling_function(svc, client_data) -CMtrans_services svc; -void *client_data; +libcmselect_LTX_polling_function(CMtrans_services svc, void *client_data) { select_data_ptr sd = *((select_data_ptr *)client_data); if (sd == NULL) { @@ -1074,10 +1044,7 @@ void *client_data; } extern void -libcmselect_LTX_select_initialize(svc, cm, client_data) -CMtrans_services svc; -CManager cm; -void *client_data; +libcmselect_LTX_select_initialize(CMtrans_services svc, CManager cm, void *client_data) { if (*((select_data_ptr *)client_data) == NULL) { init_select_data(svc, (select_data_ptr*)client_data, cm); @@ -1085,10 +1052,7 @@ void *client_data; } extern void -libcmselect_LTX_select_shutdown(svc, cm, client_data) -CMtrans_services svc; -CManager cm; -void *client_data; +libcmselect_LTX_select_shutdown(CMtrans_services svc, CManager cm, void *client_data) { select_data_ptr *sdp = client_data; select_data_ptr sd = *sdp; @@ -1101,10 +1065,7 @@ void *client_data; } extern void -libcmselect_LTX_select_free(svc, cm, client_data) -CMtrans_services svc; -CManager cm; -void *client_data; +libcmselect_LTX_select_free(CMtrans_services svc, CManager cm, void *client_data) { select_data_ptr *sdp = client_data; select_data_ptr sd = *sdp; @@ -1119,9 +1080,7 @@ void *client_data; } extern void -libcmselect_LTX_select_stop(svc, client_data) -CMtrans_services svc; -void *client_data; +libcmselect_LTX_select_stop(CMtrans_services svc, void *client_data) { if (*((select_data_ptr *)client_data) != NULL) { (*((select_data_ptr*)client_data))->closed = 1; diff --git a/cmsockets.c b/cmsockets.c index 14a7452137..26d83b88cd 100644 --- a/cmsockets.c +++ b/cmsockets.c @@ -3,8 +3,10 @@ #include #ifdef HAVE_WINDOWS_H +#include #include -#include +#include +#include #define getpid() _getpid() #else #include @@ -45,6 +47,8 @@ #include #include #include +#else +#include #endif #ifdef HAVE_UNISTD_H #include @@ -86,7 +90,7 @@ typedef struct socket_client_data { CManager cm; char *hostname; int listen_count; - int *listen_fds; + SOCKET *listen_fds; int *listen_ports; attr_list characteristics; CMtrans_services svc; @@ -97,19 +101,17 @@ typedef enum {Block, Non_Block} socket_block_state; typedef struct socket_connection_data { int remote_IP; int remote_contact_port; - int fd; + SOCKET fd; socket_client_data_ptr sd; socket_block_state block_state; CMConnection conn; } *socket_conn_data_ptr; -#ifdef WSAEWOULDBLOCK -#define EWOULDBLOCK WSAEWOULDBLOCK -#define EAGAIN WSAEINPROGRESS -#define EINTR WSAEINTR -#define errno GetLastError() +#ifdef _MSC_VER #define read(fd, buf, len) recv(fd, buf, len, 0) #define write(fd, buf, len) send(fd, buf, len, 0) +#define close(x) closesocket(x) +#define INST_ADDRSTRLEN 50 #endif static atom_t CM_FD = -1; @@ -127,15 +129,14 @@ static atom_t CM_IP_ADDR = -1; #define TIMING_GUARD_STOP gettimeofday(&t1, NULL); timersub(&t1, &t0, &diff); if (diff.tv_sec > 0) fprintf(stderr, "TIME GUARD at %s:%d exceeded, time was was <%ld.%06ld> secs\n", __FILE__, __LINE__, (long)diff.tv_sec, (long)diff.tv_usec);} static int -check_host(hostname, sin_addr) -char *hostname; -void *sin_addr; +check_host(char *hostname, void *sin_addr) { struct hostent *host_addr; host_addr = gethostbyname(hostname); if (host_addr == NULL) { struct in_addr addr; - if (inet_aton(hostname, &addr) == 0) { + if (inet_pton(PF_INET, hostname, &addr) == 0) { +// if (inet_aton(hostname, &addr) == 0) { /* * not translatable as a hostname or * as a dot-style string IP address @@ -151,8 +152,7 @@ void *sin_addr; } static socket_conn_data_ptr -create_socket_conn_data(svc) -CMtrans_services svc; +create_socket_conn_data(CMtrans_services svc) { socket_conn_data_ptr socket_conn_data = svc->malloc_func(sizeof(struct socket_connection_data)); @@ -203,20 +203,22 @@ int fd; #endif +#ifndef INET_ADDRSTRLEN +#define INET_ADDRSTRLEN 50 +#endif + /* * Accept socket connection */ static void -socket_accept_conn(void_trans, void_conn_sock) -void *void_trans; -void *void_conn_sock; +socket_accept_conn(void *void_trans, void *void_conn_sock) { transport_entry trans = (transport_entry) void_trans; - int conn_sock = (int) (long) void_conn_sock; + int conn_sock = (int) (intptr_t) void_conn_sock; socket_client_data_ptr sd = (socket_client_data_ptr) trans->trans_data; CMtrans_services svc = sd->svc; socket_conn_data_ptr socket_conn_data; - int sock; + SOCKET sock; struct sockaddr sock_addr; unsigned int sock_len = sizeof(sock_addr); int int_port_num; @@ -262,24 +264,24 @@ void *void_conn_sock; socket_conn_data->conn = conn; add_attr(conn_attr_list, CM_FD, Attr_Int4, - (attr_value) (long)sock); + (attr_value) (intptr_t)sock); sock_len = sizeof(sock_addr); memset(&sock_addr, 0, sock_len); getsockname(sock, (struct sockaddr *) &sock_addr, &sock_len); int_port_num = ntohs(((struct sockaddr_in *) &sock_addr)->sin_port); add_attr(conn_attr_list, CM_THIS_CONN_PORT, Attr_Int4, - (attr_value) (long)int_port_num); + (attr_value) (intptr_t)int_port_num); memset(&sock_addr, 0, sizeof(sock_addr)); sock_len = sizeof(sock_addr); if (getpeername(sock, &sock_addr, &sock_len) == 0) { int_port_num = ntohs(((struct sockaddr_in *) &sock_addr)->sin_port); add_attr(conn_attr_list, CM_PEER_CONN_PORT, Attr_Int4, - (attr_value) (long)int_port_num); + (attr_value) (intptr_t)int_port_num); socket_conn_data->remote_IP = ntohl(((struct sockaddr_in *) &sock_addr)->sin_addr.s_addr); add_attr(conn_attr_list, CM_PEER_IP, Attr_Int4, - (attr_value) (long)socket_conn_data->remote_IP); + (attr_value) (intptr_t)socket_conn_data->remote_IP); } { char str[INET_ADDRSTRLEN]; @@ -295,7 +297,7 @@ void *void_conn_sock; socket_conn_data->remote_contact_port = ntohs(socket_conn_data->remote_contact_port); add_attr(conn_attr_list, CM_PEER_LISTEN_PORT, Attr_Int4, - (attr_value) (long)socket_conn_data->remote_contact_port); + (attr_value) (intptr_t)socket_conn_data->remote_contact_port); svc->trace_out(sd->cm, "Remote host (IP %x) is listening at port %d\n", socket_conn_data->remote_IP, socket_conn_data->remote_contact_port); @@ -310,9 +312,7 @@ void *void_conn_sock; } extern void -libcmsockets_LTX_shutdown_conn(svc, scd) -CMtrans_services svc; -socket_conn_data_ptr scd; +libcmsockets_LTX_shutdown_conn(CMtrans_services svc, socket_conn_data_ptr scd) { svc->connection_deref(scd->conn); svc->fd_remove_select(scd->sd->cm, scd->fd); @@ -339,16 +339,10 @@ is_private_10(int IP) return ((IP & 0xff000000) == 0x0A000000); /* equal 10.x.x.x */ } -static int -initiate_conn(cm, svc, trans, attrs, socket_conn_data, conn_attr_list) -CManager cm; -CMtrans_services svc; -transport_entry trans; -attr_list attrs; -socket_conn_data_ptr socket_conn_data; -attr_list conn_attr_list; +static SOCKET +initiate_conn(CManager cm, CMtrans_services svc, transport_entry trans, attr_list attrs, socket_conn_data_ptr socket_conn_data, attr_list conn_attr_list) { - int sock; + SOCKET sock; #ifdef TCP_NODELAY int delay_value = 1; @@ -373,14 +367,14 @@ attr_list conn_attr_list; assert(CM_LOCKED(svc, sd->cm)); } if (!query_attr(attrs, CM_IP_HOSTNAME, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & host_name)) { + /* value pointer */ (attr_value *)(intptr_t) & host_name)) { svc->trace_out(cm, "TCP/IP transport found no IP_HOST attribute"); host_name = NULL; } else { svc->trace_out(cm, "TCP/IP transport connect to host %s", host_name); } if (!query_attr(attrs, CM_IP_ADDR, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & host_ip)) { + /* value pointer */ (attr_value *)(intptr_t) & host_ip)) { svc->trace_out(cm, "TCP/IP transport found no IP_ADDR attribute"); /* wasn't there */ host_ip = 0; @@ -391,7 +385,7 @@ attr_list conn_attr_list; return -1; if (!query_attr(attrs, CM_IP_PORT, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & int_port_num)) { + /* value pointer */ (attr_value *)(intptr_t) & int_port_num)) { svc->trace_out(cm, "TCP/IP transport found no IP_PORT attribute"); return -1; } else { @@ -487,7 +481,7 @@ attr_list conn_attr_list; if (sd->listen_count) { local_listen_port = htons(sd->listen_ports[0]); } - if (write(sock, &local_listen_port, 4) != 4) { + if (write(sock, (const char *) & local_listen_port, 4) != 4) { svc->trace_out(cm, "Write failed\n"); return -1; } @@ -499,14 +493,14 @@ attr_list conn_attr_list; socket_conn_data->sd = sd; add_attr(conn_attr_list, CM_FD, Attr_Int4, - (attr_value) (long)sock); + (attr_value) (intptr_t)sock); sock_len = sizeof(sock_addr); getsockname(sock, (struct sockaddr *) &sock_addr, &sock_len); int_port_num = ntohs(((struct sockaddr_in *) &sock_addr)->sin_port); add_attr(conn_attr_list, CM_THIS_CONN_PORT, Attr_Int4, - (attr_value) (long)int_port_num); + (attr_value) (intptr_t)int_port_num); add_attr(conn_attr_list, CM_PEER_IP, Attr_Int4, - (attr_value) (long)socket_conn_data->remote_IP); + (attr_value) (intptr_t)socket_conn_data->remote_IP); return sock; } @@ -517,16 +511,12 @@ attr_list conn_attr_list; * (name_str stores the machine name). */ extern CMConnection -libcmsockets_LTX_initiate_conn(cm, svc, trans, attrs) -CManager cm; -CMtrans_services svc; -transport_entry trans; -attr_list attrs; +libcmsockets_LTX_initiate_conn(CManager cm, CMtrans_services svc, transport_entry trans, attr_list attrs) { socket_conn_data_ptr socket_conn_data = create_socket_conn_data(svc); attr_list conn_attr_list = create_attr_list(); CMConnection conn; - int sock; + SOCKET sock; socket_client_data_ptr sd = trans->trans_data; if (sd->cm) { @@ -537,7 +527,7 @@ attr_list attrs; return NULL; add_attr(conn_attr_list, CM_PEER_LISTEN_PORT, Attr_Int4, - (attr_value) (long)socket_conn_data->remote_contact_port); + (attr_value) (intptr_t)socket_conn_data->remote_contact_port); conn = svc->connection_create(trans, socket_conn_data, conn_attr_list); socket_conn_data->conn = conn; @@ -561,11 +551,7 @@ attr_list attrs; * same as ours and if the IP_PORT matches the one we are listening on. */ extern int -libcmsockets_LTX_self_check(cm, svc, trans, attrs) -CManager cm; -CMtrans_services svc; -transport_entry trans; -attr_list attrs; +libcmsockets_LTX_self_check(CManager cm, CMtrans_services svc, transport_entry trans, attr_list attrs) { socket_client_data_ptr sd = trans->trans_data; @@ -582,18 +568,18 @@ attr_list attrs; if (IP == 0) IP = INADDR_LOOPBACK; } if (!query_attr(attrs, CM_IP_HOSTNAME, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & host_name)) { + /* value pointer */ (attr_value *)(intptr_t) & host_name)) { svc->trace_out(cm, "CMself check TCP/IP transport found no IP_HOST attribute"); host_name = NULL; } if (!query_attr(attrs, CM_IP_ADDR, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & host_addr)) { + /* value pointer */ (attr_value *)(intptr_t) & host_addr)) { svc->trace_out(cm, "CMself check TCP/IP transport found no IP_ADDR attribute"); if (host_name == NULL) return 0; host_addr = 0; } if (!query_attr(attrs, CM_IP_PORT, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & int_port_num)) { + /* value pointer */ (attr_value *)(intptr_t) & int_port_num)) { svc->trace_out(cm, "CMself check TCP/IP transport found no IP_PORT attribute"); return 0; } @@ -620,12 +606,7 @@ attr_list attrs; } extern int -libcmsockets_LTX_connection_eq(cm, svc, trans, attrs, scd) -CManager cm; -CMtrans_services svc; -transport_entry trans; -attr_list attrs; -socket_conn_data_ptr scd; +libcmsockets_LTX_connection_eq(CManager cm, CMtrans_services svc, transport_entry trans, attr_list attrs, socket_conn_data_ptr scd) { int int_port_num; @@ -633,16 +614,16 @@ socket_conn_data_ptr scd; char *host_name = NULL; if (!query_attr(attrs, CM_IP_HOSTNAME, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & host_name)) { + /* value pointer */ (attr_value *)(intptr_t) & host_name)) { svc->trace_out(cm, "TCP/IP transport found no IP_HOST attribute"); } if (!query_attr(attrs, CM_IP_PORT, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & int_port_num)) { + /* value pointer */ (attr_value *)(intptr_t) & int_port_num)) { svc->trace_out(cm, "Conn Eq TCP/IP transport found no IP_PORT attribute"); return 0; } if (!query_attr(attrs, CM_IP_ADDR, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & requested_IP)) { + /* value pointer */ (attr_value *)(intptr_t) & requested_IP)) { svc->trace_out(cm, "TCP/IP transport found no IP_ADDR attribute"); } if (requested_IP == -1) { @@ -668,17 +649,13 @@ socket_conn_data_ptr scd; * Create an IP socket for connection from other CMs */ extern attr_list -libcmsockets_LTX_non_blocking_listen(cm, svc, trans, listen_info) -CManager cm; -CMtrans_services svc; -transport_entry trans; -attr_list listen_info; +libcmsockets_LTX_non_blocking_listen(CManager cm, CMtrans_services svc, transport_entry trans, attr_list listen_info) { socket_client_data_ptr sd = trans->trans_data; unsigned int length; struct sockaddr_in sock_addr; int sock_opt_val = 1; - int conn_sock = 0; + SOCKET conn_sock = 0; int attr_port_num = 0; u_short port_num = 0; int port_range_low, port_range_high; @@ -695,7 +672,7 @@ attr_list listen_info; */ if (listen_info != NULL && !query_attr(listen_info, CM_IP_PORT, - NULL, (attr_value *)(long) & attr_port_num)) { + NULL, (attr_value *)(intptr_t) & attr_port_num)) { port_num = 0; } else { if (attr_port_num > USHRT_MAX || attr_port_num < 0) { @@ -758,14 +735,14 @@ attr_list listen_info; return NULL; } } else { - long seedval = time(NULL) + getpid(); + long seedval = (long) time(NULL) + getpid(); /* port num is free. Constrain to range to standards */ int size = port_range_high - port_range_low; int tries = 30; int result = SOCKET_ERROR; - srand48(seedval); + srand(seedval); while (tries > 0) { - int target = port_range_low + size * drand48(); + int target = port_range_low + (rand() % size); sock_addr.sin_port = htons(target); svc->trace_out(cm, "CMSocket trying to bind port %d", target); result = bind(conn_sock, (struct sockaddr *) &sock_addr, @@ -774,7 +751,7 @@ attr_list listen_info; if (result != SOCKET_ERROR) tries = 0; if (tries%5 == 4) { /* try reseeding in case we're in sync with another process */ - srand48(time(NULL) + getpid()); + srand((int)time(NULL) + (int)getpid()); } if (tries == 20) { /* damn, tried a lot, increase the range (This might violate specified range) */ @@ -796,8 +773,8 @@ attr_list listen_info; return NULL; } svc->trace_out(cm, "CMSockets Adding socket_accept_conn as action on fd %d", conn_sock); - svc->fd_add_select(cm, conn_sock, socket_accept_conn, - (void *) trans, (void *) (long)conn_sock); + svc->fd_add_select(cm, conn_sock, (select_list_func)socket_accept_conn, + (void *) trans, (void *) (intptr_t)conn_sock); length = sizeof(sock_addr); if (getsockname(conn_sock, (struct sockaddr *) &sock_addr, &length) < 0) { @@ -833,7 +810,7 @@ attr_list listen_info; sd->hostname = strdup(host_name); if ((IP != 0) && (!use_hostname)) { add_attr(ret_list, CM_IP_ADDR, Attr_Int4, - (attr_value) (long)IP); + (attr_value) (intptr_t)IP); } if ((getenv("CMSocketsUseHostname") != NULL) || use_hostname) { @@ -844,7 +821,7 @@ attr_list listen_info; (attr_value)INADDR_LOOPBACK); } add_attr(ret_list, CM_IP_PORT, Attr_Int4, - (attr_value) (long)int_port_num); + (attr_value) (intptr_t)int_port_num); return ret_list; } @@ -863,11 +840,7 @@ struct iovec { #endif extern void -libcmsockets_LTX_set_write_notify(trans, svc, scd, enable) -transport_entry trans; -CMtrans_services svc; -socket_conn_data_ptr scd; -int enable; +libcmsockets_LTX_set_write_notify(transport_entry trans, CMtrans_services svc, socket_conn_data_ptr scd, int enable) { if (enable != 0) { svc->fd_write_select(trans->cm, scd->fd, (select_list_func) trans->write_possible, @@ -883,6 +856,7 @@ static void set_block_state(CMtrans_services svc, socket_conn_data_ptr scd, socket_block_state needed_block_state) { +#ifndef _MSC_VER int fdflags = fcntl(scd->fd, F_GETFL, 0); if (fdflags == -1) { perror("getflags\n"); @@ -904,24 +878,22 @@ set_block_state(CMtrans_services svc, socket_conn_data_ptr scd, svc->trace_out(scd->sd->cm, "CMSocket switch fd %d to nonblocking", scd->fd); } +#else +#endif } -extern int -libcmsockets_LTX_read_to_buffer_func(svc, scd, buffer, requested_len, - non_blocking) -CMtrans_services svc; -socket_conn_data_ptr scd; -void *buffer; -ssize_t requested_len; -int non_blocking; +extern ssize_t +libcmsockets_LTX_read_to_buffer_func(CMtrans_services svc, socket_conn_data_ptr scd, void *buffer, ssize_t requested_len, int non_blocking) { ssize_t left, iget; - +#ifndef _MSC_VER + // GSE int fdflags = fcntl(scd->fd, F_GETFL, 0); if (fdflags == -1) { perror("getflags\n"); return -1; } +#endif if (scd->block_state == Block) { svc->trace_out(scd->sd->cm, "CMSocket fd %d state block", scd->fd); } else { @@ -934,7 +906,7 @@ int non_blocking; scd->fd); set_block_state(svc, scd, Non_Block); } - iget = read(scd->fd, (char *) buffer, requested_len); + iget = read(scd->fd, (char *) buffer, (int)requested_len); if ((iget == -1) || (iget == 0)) { int lerrno = errno; if ((lerrno != EWOULDBLOCK) && @@ -957,7 +929,7 @@ int non_blocking; while (left > 0) { int lerrno; iget = read(scd->fd, (char *) buffer + requested_len - left, - left); + (int)left); lerrno = errno; if (iget == -1) { if ((lerrno != EWOULDBLOCK) && @@ -1010,8 +982,8 @@ int iovcnt; while (left > 0) { errno = 0; size_t this_write = left; - char *this_base = iov[i].iov_base + iov[i].iov_len - left; - iget = write(fd, this_base, this_write); + char *this_base = ((char*)iov[i].iov_base) + iov[i].iov_len - left; + iget = write(fd, this_base, (int)this_write); if (iget == -1) { int lerrno = errno; if ((lerrno != EWOULDBLOCK) && @@ -1031,13 +1003,10 @@ int iovcnt; } #endif -int long_writev(svc, scd, iovs, iovcnt) -CMtrans_services svc; -socket_conn_data_ptr scd; -void *iovs; -int iovcnt; +int long_writev(CMtrans_services svc, socket_conn_data_ptr scd, void *iovs, int iovcnt) { assert(0); // for right now, don't try this + return 0; } #ifndef MAX_RW_COUNT @@ -1045,15 +1014,10 @@ int iovcnt; #define MAX_RW_COUNT 0x7ffff000 #endif -extern int -libcmsockets_LTX_writev_func(svc, scd, iovs, iovcnt, attrs) -CMtrans_services svc; -socket_conn_data_ptr scd; -void *iovs; -int iovcnt; -attr_list attrs; +extern ssize_t +libcmsockets_LTX_writev_func(CMtrans_services svc, socket_conn_data_ptr scd, void *iovs, int iovcnt, attr_list attrs) { - int fd = scd->fd; + SOCKET fd = scd->fd; ssize_t left = 0; ssize_t iget = 0; ssize_t iovleft, i; @@ -1120,15 +1084,10 @@ attr_list attrs; } /* non blocking version */ -extern int -libcmsockets_LTX_NBwritev_func(svc, scd, iovs, iovcnt, attrs) -CMtrans_services svc; -socket_conn_data_ptr scd; -void *iovs; -int iovcnt; -attr_list attrs; +extern ssize_t +libcmsockets_LTX_NBwritev_func(CMtrans_services svc, socket_conn_data_ptr scd, void *iovs, int iovcnt, attr_list attrs) { - int fd = scd->fd; + SOCKET fd = scd->fd; ssize_t init_bytes, left = 0; ssize_t iget = 0; ssize_t iovleft, i; @@ -1180,8 +1139,8 @@ attr_list attrs; int socket_global_init = 0; #ifdef HAVE_WINDOWS_H -/* Winsock init stuff, ask for ver 1.1 */ -static WORD wVersionRequested = MAKEWORD(1, 1); +/* Winsock init stuff, ask for ver 2.2 */ +static WORD wVersionRequested = MAKEWORD(2, 2); static WSADATA wsaData; #endif @@ -1275,9 +1234,9 @@ cmsockets_add_static_transport(CManager cm, CMtrans_services svc) transport->cm = cm; transport->transport_init = (CMTransport_func)libcmsockets_LTX_initialize; transport->listen = (CMTransport_listen_func)libcmsockets_LTX_non_blocking_listen; - transport->initiate_conn = (CMConnection(*)())libcmsockets_LTX_initiate_conn; - transport->self_check = (int(*)())libcmsockets_LTX_self_check; - transport->connection_eq = (int(*)())libcmsockets_LTX_connection_eq; + transport->initiate_conn = (CMTransport_conn_func)libcmsockets_LTX_initiate_conn; + transport->self_check = (CMTransport_self_check_func)libcmsockets_LTX_self_check; + transport->connection_eq = (CMTransport_connection_eq_func)libcmsockets_LTX_connection_eq; transport->shutdown_conn = (CMTransport_shutdown_conn_func)libcmsockets_LTX_shutdown_conn; transport->read_to_buffer_func = (CMTransport_read_to_buffer_func)libcmsockets_LTX_read_to_buffer_func; transport->read_block_func = (CMTransport_read_block_func)NULL; diff --git a/cmudp.c b/cmudp.c index 35cb2d32f2..bcde47ad61 100644 --- a/cmudp.c +++ b/cmudp.c @@ -3,8 +3,8 @@ #include #ifdef HAVE_WINDOWS_H +#include #include -#include #define getpid() _getpid() #else #ifdef HAVE_SYS_TIME_H @@ -87,7 +87,7 @@ static atom_t CM_TRANSPORT_RELIABLE = -1; typedef struct udp_transport_data { CManager cm; CMtrans_services svc; - int socket_fd; + SOCKET socket_fd; int self_ip; int self_port; attr_list characteristics; @@ -109,17 +109,12 @@ typedef struct udp_connection_data { } *udp_conn_data_ptr; #ifdef WSAEWOULDBLOCK -#define EWOULDBLOCK WSAEWOULDBLOCK -#define EAGAIN WSAEINPROGRESS -#define EINTR WSAEINTR -#define errno GetLastError() #define read(fd, buf, len) recv(fd, buf, len, 0) #define write(fd, buf, len) send(fd, buf, len, 0) #endif static udp_conn_data_ptr -create_udp_conn_data(svc) -CMtrans_services svc; +create_udp_conn_data(CMtrans_services svc) { udp_conn_data_ptr udp_conn_data = svc->malloc_func(sizeof(struct udp_connection_data)); @@ -197,9 +192,7 @@ int fd; #endif extern void -libcmudp_LTX_shutdown_conn(svc, ucd) -CMtrans_services svc; -udp_conn_data_ptr ucd; +libcmudp_LTX_shutdown_conn(CMtrans_services svc, udp_conn_data_ptr ucd) { unlink_connection(ucd->utd, ucd); svc->connection_deref(ucd->conn); @@ -209,10 +202,16 @@ udp_conn_data_ptr ucd; #include "qual_hostname.c" +#ifdef _MSC_VER +static int inet_aton(const char* cp, struct in_addr* addr) +{ + addr->s_addr = inet_addr(cp); + return (addr->s_addr == INADDR_NONE) ? 0 : 1; +} +#endif + static int -check_host(hostname, sin_addr) -char *hostname; -void *sin_addr; +check_host(char *hostname, void *sin_addr) { struct hostent *host_addr; host_addr = gethostbyname(hostname); @@ -234,13 +233,7 @@ void *sin_addr; } static int -initiate_udp_conn(cm, svc, trans, attrs, udp_conn_data, conn_attr_list) -CManager cm; -CMtrans_services svc; -transport_entry trans; -attr_list attrs; -udp_conn_data_ptr udp_conn_data; -attr_list conn_attr_list; +initiate_udp_conn(CManager cm, CMtrans_services svc, transport_entry trans, attr_list attrs, udp_conn_data_ptr udp_conn_data, attr_list conn_attr_list) { int int_port_num; udp_transport_data_ptr utd = (udp_transport_data_ptr) trans->trans_data; @@ -251,14 +244,14 @@ attr_list conn_attr_list; memset(&dest_addr, 0, sizeof(dest_addr)); if (!query_attr(attrs, CM_IP_HOSTNAME, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & host_name)) { + /* value pointer */ (attr_value *)(intptr_t) & host_name)) { svc->trace_out(cm, "UDP transport found no UDP_HOST attribute"); host_name = NULL; } else { svc->trace_out(cm, "UDP transport connect to host %s", host_name); } if (!query_attr(attrs, CM_UDP_ADDR, /* type pointer */ NULL, - /* value pointer */ (attr_value *) (long) &udp_ip)) { + /* value pointer */ (attr_value *) (intptr_t) &udp_ip)) { svc->trace_out(cm, "CMUDP transport found no UDP_ADDR attribute"); /* wasn't there */ udp_ip = 0; @@ -269,7 +262,7 @@ attr_list conn_attr_list; return -1; if (!query_attr(attrs, CM_UDP_PORT, /* type pointer */ NULL, - /* value pointer */ (attr_value *) (long) &int_port_num)) { + /* value pointer */ (attr_value *) (intptr_t) &int_port_num)) { svc->trace_out(cm, "CMUDP transport found no UDP_PORT attribute"); return -1; } else { @@ -278,7 +271,7 @@ attr_list conn_attr_list; if (((network_string = getenv("CM_NETWORK")) != NULL) && (host_name != NULL)) { - int name_len = strlen(host_name) + 2 + strlen(network_string); + size_t name_len = strlen(host_name) + 2 + strlen(network_string); char *new_host_name = svc->malloc_func(name_len); char *first_dot = strchr(host_name, '.'); memset(new_host_name, 0, name_len); @@ -334,7 +327,7 @@ static void libcmudp_data_available(void *vtrans, void *vinput) { transport_entry trans = vtrans; - int input_fd = (long)vinput; + SOCKET input_fd = (SOCKET) (intptr_t) vinput; ssize_t nbytes; udp_transport_data_ptr utd = (udp_transport_data_ptr) trans->trans_data; udp_conn_data_ptr ucd = utd->connections; @@ -343,7 +336,7 @@ libcmudp_data_available(void *vtrans, void *vinput) char *msgbuf; int unused; - if (recvfrom(input_fd, &unused, 4, MSG_PEEK, + if (recvfrom(input_fd, (char*) & unused, 4, MSG_PEEK, (struct sockaddr *) &addr, &addrlen) != 4) { return; } @@ -398,11 +391,7 @@ libcmudp_data_available(void *vtrans, void *vinput) * Initiate a connection to a udp group. */ extern CMConnection -libcmudp_LTX_initiate_conn(cm, svc, trans, attrs) -CManager cm; -CMtrans_services svc; -transport_entry trans; -attr_list attrs; +libcmudp_LTX_initiate_conn(CManager cm, CMtrans_services svc, transport_entry trans, attr_list attrs) { udp_conn_data_ptr udp_conn_data = create_udp_conn_data(svc); attr_list conn_attr_list = create_attr_list(); @@ -431,11 +420,7 @@ attr_list attrs; * indicated by the attribute list, would we be connecting to ourselves? */ extern int -libcmudp_LTX_self_check(cm, svc, trans, attrs) -CManager cm; -CMtrans_services svc; -transport_entry trans; -attr_list attrs; +libcmudp_LTX_self_check(CManager cm, CMtrans_services svc, transport_entry trans, attr_list attrs) { udp_transport_data_ptr utd = trans->trans_data; int host_addr; @@ -448,18 +433,18 @@ attr_list attrs; IP = get_self_ip_addr(cm, svc); } if (!query_attr(attrs, CM_IP_HOSTNAME, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & host_name)) { + /* value pointer */ (attr_value *)(intptr_t) & host_name)) { svc->trace_out(cm, "CMself check UDP transport found no IP_HOST attribute"); host_name = NULL; } if (!query_attr(attrs, CM_UDP_ADDR, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & host_addr)) { + /* value pointer */ (attr_value *)(intptr_t) & host_addr)) { svc->trace_out(cm, "CMself check UDP transport found no UDP_ADDR attribute"); if (host_name == NULL) return 0; host_addr = 0; } if (!query_attr(attrs, CM_UDP_PORT, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & int_port_num)) { + /* value pointer */ (attr_value *)(intptr_t) & int_port_num)) { svc->trace_out(cm, "CMself check UDP transport found no UDP_PORT attribute"); return 0; } @@ -482,12 +467,7 @@ attr_list attrs; } extern int -libcmudp_LTX_connection_eq(cm, svc, trans, attrs, ucd) -CManager cm; -CMtrans_services svc; -transport_entry trans; -attr_list attrs; -udp_conn_data_ptr ucd; +libcmudp_LTX_connection_eq(CManager cm, CMtrans_services svc, transport_entry trans, attr_list attrs, udp_conn_data_ptr ucd) { int int_port_num; @@ -495,19 +475,19 @@ udp_conn_data_ptr ucd; char *host_name = NULL; if (!query_attr(attrs, CM_IP_HOSTNAME, /* type pointer */ NULL, - /* value pointer */ (attr_value *)(long) & host_name)) { + /* value pointer */ (attr_value *)(intptr_t) & host_name)) { svc->trace_out(cm, "UDP transport found no UDP_HOST attribute"); host_name = NULL; } else { svc->trace_out(cm, "UDP transport connect to host %s", host_name); } if (!query_attr(attrs, CM_UDP_PORT, /* type pointer */ NULL, - /* value pointer */ (attr_value *) (long) &int_port_num)) { + /* value pointer */ (attr_value *) (intptr_t) &int_port_num)) { svc->trace_out(cm, "Conn Eq CMUdp transport found no UDP_PORT attribute"); return 0; } if (!query_attr(attrs, CM_UDP_ADDR, /* type pointer */ NULL, - /* value pointer */ (attr_value *) (long) &requested_IP)) { + /* value pointer */ (attr_value *) (intptr_t) &requested_IP)) { svc->trace_out(cm, "CMUdp transport found no UDP_ADDR attribute"); } svc->trace_out(cm, "CMUdp Conn_eq comparing IP/ports %x/%d and %x/%d", @@ -531,11 +511,7 @@ udp_conn_data_ptr ucd; extern attr_list -libcmudp_LTX_non_blocking_listen(cm, svc, trans, listen_info) -CManager cm; -CMtrans_services svc; -transport_entry trans; -attr_list listen_info; +libcmudp_LTX_non_blocking_listen(CManager cm, CMtrans_services svc, transport_entry trans, attr_list listen_info) { udp_transport_data_ptr utd = trans->trans_data; int int_port_num = 0; @@ -543,13 +519,13 @@ attr_list listen_info; attr_list listen_list; unsigned int nl; int one = 1; - int socket_fd; + SOCKET socket_fd; struct sockaddr_in addr; int IP = get_self_ip_addr(cm, svc); if (listen_info != NULL && (!query_attr(listen_info, CM_UDP_PORT, /* type pointer */ NULL, - (attr_value *) (long) &int_port_num))) { + (attr_value *) (intptr_t) &int_port_num))) { svc->trace_out(cm, "CMUDP transport found no UDP_PORT attribute"); int_port_num = 0; } else { @@ -599,7 +575,7 @@ attr_list listen_info; (attr_value) strdup("udp")); svc->trace_out(cm, "CMudp Adding libcmudp_data_available as action on fd %d", socket_fd); svc->fd_add_select(cm, socket_fd, libcmudp_data_available, - (void *) trans, (void *) (long)socket_fd); + (void *) trans, (void *) (intptr_t)socket_fd); utd->socket_fd = socket_fd; utd->self_ip = IP; utd->self_port = ntohs(addr.sin_port); @@ -624,11 +600,7 @@ struct iovec { * that are more efficient if they allocate their own buffer space. */ extern void * -libcmudp_LTX_read_block_func(svc, ucd, actual_len, offset_ptr) -CMtrans_services svc; -udp_conn_data_ptr ucd; -size_t *actual_len; -size_t *offset_ptr; +libcmudp_LTX_read_block_func(CMtrans_services svc, udp_conn_data_ptr ucd, size_t *actual_len, size_t *offset_ptr) { *actual_len = ucd->read_buf_len; *offset_ptr = 0; @@ -642,16 +614,9 @@ size_t *offset_ptr; #endif extern int -libcmudp_LTX_writev_func(svc, ucd, iov, iovcnt, attrs) -CMtrans_services svc; -udp_conn_data_ptr ucd; -struct iovec *iov; -size_t iovcnt; -attr_list attrs; +libcmudp_LTX_writev_func(CMtrans_services svc, udp_conn_data_ptr ucd, struct iovec *iov, size_t iovcnt, attr_list attrs) { - int fd = ucd->utd->socket_fd; - struct sockaddr_in addr = ucd->dest_addr; - struct msghdr msg; + SOCKET fd = ucd->utd->socket_fd; if (ucd->utd->socket_fd == -1) { if ((ucd->utd->socket_fd = socket(AF_INET, SOCK_DGRAM, 0)) < 0) { perror("socket"); @@ -661,6 +626,9 @@ attr_list attrs; fd = ucd->utd->socket_fd; svc->trace_out(ucd->utd->cm, "CMUdp writev of %d vectors on fd %d", iovcnt, fd); +#ifndef _MSC_VER + struct sockaddr_in addr = ucd->dest_addr; + struct msghdr msg; memset(&msg, 0, sizeof(msg)); msg.msg_name = (void*)&addr; msg.msg_namelen = sizeof(addr); @@ -670,7 +638,10 @@ attr_list attrs; perror("write sendmsg"); exit(1); } - return iovcnt; +#else + // no reimplementation for windows currently +#endif + return (int)iovcnt; } #ifdef HAVE_WINDOWS_H @@ -690,9 +661,7 @@ free_udp_data(CManager cm, void *utdv) } extern void * -libcmudp_LTX_initialize(cm, svc) -CManager cm; -CMtrans_services svc; +libcmudp_LTX_initialize(CManager cm, CMtrans_services svc) { static int atom_init = 0; @@ -748,9 +717,9 @@ cmudp_add_static_transport(CManager cm, CMtrans_services svc) transport->cm = cm; transport->transport_init = (CMTransport_func)libcmudp_LTX_initialize; transport->listen = (CMTransport_listen_func)libcmudp_LTX_non_blocking_listen; - transport->initiate_conn = (CMConnection(*)())libcmudp_LTX_initiate_conn; - transport->self_check = (int(*)())libcmudp_LTX_self_check; - transport->connection_eq = (int(*)())libcmudp_LTX_connection_eq; + transport->initiate_conn = (CMTransport_conn_func)libcmudp_LTX_initiate_conn; + transport->self_check = (CMTransport_self_check_func)libcmudp_LTX_self_check; + transport->connection_eq = (CMTransport_connection_eq_func)libcmudp_LTX_connection_eq; transport->shutdown_conn = (CMTransport_shutdown_conn_func)libcmudp_LTX_shutdown_conn; transport->read_to_buffer_func = (CMTransport_read_to_buffer_func)NULL; transport->read_block_func = (CMTransport_read_block_func)libcmudp_LTX_read_block_func;; diff --git a/config.h.cmake b/config.h.cmake index 2a747f5964..13943a10a8 100644 --- a/config.h.cmake +++ b/config.h.cmake @@ -135,8 +135,8 @@ /* Define to 1 if you have the header file. */ #cmakedefine HAVE_WINDOWS_H -/* Define to 1 if you have the header file. */ -#cmakedefine HAVE_WINSOCK_H +/* Define to 1 if you have the header file. */ +#cmakedefine HAVE_WINSOCK2_H /* The size of `int', as computed by sizeof. */ #define SIZEOF_INT @SIZEOF_INT@ diff --git a/dfg_tests/anon_multi_test.c b/dfg_tests/anon_multi_test.c index 8b37368885..16a3a35eb8 100644 --- a/dfg_tests/anon_multi_test.c +++ b/dfg_tests/anon_multi_test.c @@ -15,6 +15,14 @@ #include "config.h" #include "ev_dfg.h" #include "test_support.h" +#ifdef HAVE_WINDOWS_H +#include +#define drand48() (((double)rand())/((double)RAND_MAX)) +#define lrand48() rand() +#define srand48(x) +#else +#include +#endif static int status; static EVclient test_client; @@ -379,6 +387,7 @@ submit any remaining anon from bottom (oldest) } } } + extern int be_test_master(int argc, char **argv) { diff --git a/dfg_tests/auto_tree_test.c b/dfg_tests/auto_tree_test.c index e7bd5df7d6..d4b1d781b6 100644 --- a/dfg_tests/auto_tree_test.c +++ b/dfg_tests/auto_tree_test.c @@ -1,10 +1,12 @@ #include #include #include +#include "config.h" +#ifdef HAVE_UNISTD_H #include +#endif #include -#include "config.h" #include "cod.h" #include "ev_dfg.h" #include "test_support.h" @@ -33,7 +35,7 @@ int generate_record() { return getpid(); } static cod_extern_entry externs[] = { - {"generate_record", (void *) (long) generate_record}, + {"generate_record", (void *) (intptr_t) generate_record}, {NULL, NULL} }; static char extern_string[] = "int generate_record();\0\0"; @@ -43,6 +45,14 @@ char *COD_generate = "{\n\ return 1;\n\ }"; +static void +fail_and_die(int signal) +{ + (void)signal; + fprintf(stderr, "auto_tree_test failed to complete in reasonable time\n"); + exit(1); +} + extern int be_test_master(int argc, char **argv) { @@ -58,7 +68,11 @@ be_test_master(int argc, char **argv) EVdfg test_dfg; EVclient_sinks sink_capabilities; +#ifdef HAVE_WINDOWS_H + SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); +#else alarm(240); /* reset time limit to 4 minutes */ +#endif if (argc == 1) { sscanf(argv[0], "%d", &level_count); } diff --git a/dfg_tests/delayed_submit.c b/dfg_tests/delayed_submit.c index 7f0d5f9058..be9b50ddd5 100644 --- a/dfg_tests/delayed_submit.c +++ b/dfg_tests/delayed_submit.c @@ -5,9 +5,26 @@ #include #include #include +#include "config.h" +#ifdef HAVE_SYS_TIME_H #include +#endif +#ifdef _MSC_VER +#include +#include +#endif +#ifndef timersub +#define timersub(a, b, result) \ + do { \ + (result)->tv_sec = (a)->tv_sec - (b)->tv_sec; \ + (result)->tv_usec = (a)->tv_usec - (b)->tv_usec; \ + if ((result)->tv_usec < 0) { \ + --(result)->tv_sec; \ + (result)->tv_usec += 1000000; \ + } \ + } while (0) +#endif // timersub -#include "config.h" #include "evpath.h" #include "ev_dfg.h" #include "test_support.h" @@ -45,7 +62,17 @@ event_handler(CManager cm, void *vevent, void *client_data, attr_list attrs) (void)cm; (void)client_data; if (quiet <= 0) printf("In handler for stone %d\n", EVexecuting_stone(cm)); - gettimeofday(&now, NULL); +#ifdef HAVE_GETTIMEOFDAY + gettimeofday((struct timeval*)&now, NULL); +#else + /* GSE... No gettimeofday on windows. + * Must use _ftime, get millisec time, convert to usec. Bleh. + */ + struct _timeb nowb; + _ftime(&nowb); + ((struct timeval*)&now)->tv_sec = (long)nowb.time; + ((struct timeval*)&now)->tv_usec = nowb.millitm * 1000; +#endif timersub(&now, &event->submit_time, &delay); if (quiet <= 0) { printf("Now is %ld.%06d, sent %ld.%06d\n", (long)now.tv_sec, (int)now.tv_usec, (long)event->submit_time.tv_sec, (int)event->submit_time.tv_usec); diff --git a/dfg_tests/fail_chain_test.c b/dfg_tests/fail_chain_test.c index a9ebbf8b2f..a3673e6db4 100755 --- a/dfg_tests/fail_chain_test.c +++ b/dfg_tests/fail_chain_test.c @@ -1,9 +1,11 @@ #include #include +#include "config.h" #include +#ifdef HAVE_UNISTD_H #include -#include "config.h" +#endif #include "evpath.h" #include "ev_dfg.h" #include "test_support.h" @@ -114,6 +116,14 @@ fail_handler(EVdfg dfg, char *failed_node_name, int failed_stone) EVdfg_realize(dfg); } +static void +fail_and_die(int signal) +{ + (void)signal; + fprintf(stderr, "auto_tree_test failed to complete in reasonable time\n"); + exit(1); +} + extern int be_test_master(int argc, char **argv) { @@ -127,7 +137,11 @@ be_test_master(int argc, char **argv) EVclient_sinks sink_capabilities; EVclient_sources source_capabilities; +#ifdef HAVE_WINDOWS_H + SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); +#else alarm(240); /* reset time limit to 4 minutes */ +#endif if (argc == 1) { sscanf(argv[0], "%d", &node_count); } @@ -242,7 +256,11 @@ be_test_child(int argc, char **argv) EVclient_sinks sink_capabilities; EVclient_sources source_capabilities; +#ifdef HAVE_WINDOWS_H + SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); +#else alarm(240); /* reset time limit to 4 minutes */ +#endif cm = CManager_create(); if (argc != 3) { printf("Child usage: evtest \n"); diff --git a/dfg_tests/metrics_test.c b/dfg_tests/metrics_test.c index 112542192e..46f0bdd4ff 100644 --- a/dfg_tests/metrics_test.c +++ b/dfg_tests/metrics_test.c @@ -1,10 +1,12 @@ #include #include #include +#include "config.h" +#ifdef HAVE_UNISTD_H #include +#endif #include -#include "config.h" #include "cod.h" #include "ev_dfg.h" #include "test_support.h" diff --git a/dfg_tests/multi_test.c b/dfg_tests/multi_test.c index bb8467a830..a7d094644d 100644 --- a/dfg_tests/multi_test.c +++ b/dfg_tests/multi_test.c @@ -70,7 +70,7 @@ void generate_a_record(rec_a_ptr event) { /* always even */ - event->a_field = ((int) lrand48() % 50) * 2; + event->a_field = ((int) rand() % 50) * 2; } static @@ -78,7 +78,7 @@ void generate_b_record(rec_b_ptr event) { /* always odd */ - event->b_field = ((int) lrand48() % 50) * 2 + 1; + event->b_field = ((int) rand() % 50) * 2 + 1; } static diff --git a/dfg_tests/router_test.c b/dfg_tests/router_test.c index dee11f0844..6a3efca232 100644 --- a/dfg_tests/router_test.c +++ b/dfg_tests/router_test.c @@ -8,6 +8,13 @@ #include "ev_dfg.h" #include "test_support.h" +#ifdef HAVE_WINDOWS_H +#include +#define drand48() (((double)rand())/((double)RAND_MAX)) +#define lrand48() rand() +#define srand48(x) +#endif + static int status; static EVclient test_client; diff --git a/dfg_tests/self_reconfig_test.c b/dfg_tests/self_reconfig_test.c index 253f7f9a3f..4970d8d050 100644 --- a/dfg_tests/self_reconfig_test.c +++ b/dfg_tests/self_reconfig_test.c @@ -1,9 +1,11 @@ #include #include +#include "config.h" #include +#ifdef HAVE_UNISTD_H #include -#include "config.h" +#endif #include "evpath.h" #include "ev_dfg.h" #include "test_support.h" @@ -142,6 +144,14 @@ reconfig_handler(EVdfg dfg) } +static void +fail_and_die(int signal) +{ + (void)signal; + fprintf(stderr, "auto_tree_test failed to complete in reasonable time\n"); + exit(1); +} + extern int be_test_master(int argc, char **argv) { @@ -155,7 +165,11 @@ be_test_master(int argc, char **argv) EVclient_sinks sink_capabilities; EVclient_sources source_capabilities; +#ifdef HAVE_WINDOWS_H + SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); +#else alarm(240); /* reset time limit to 4 minutes */ +#endif if (argc == 1) { sscanf(argv[0], "%d", &node_count); } @@ -279,7 +293,11 @@ be_test_child(int argc, char **argv) EVclient_sinks sink_capabilities; EVclient_sources source_capabilities; +#ifdef HAVE_WINDOWS_H + SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); +#else alarm(240); /* reset time limit to 4 minutes */ +#endif cm = CManager_create(); if (argc != 3) { printf("Child usage: evtest \n"); diff --git a/dfg_tests/test_support.c b/dfg_tests/test_support.c index 8d4bab0558..4c49643ad7 100644 --- a/dfg_tests/test_support.c +++ b/dfg_tests/test_support.c @@ -7,13 +7,17 @@ #include #include #include +#ifdef HAVE_ARPA_INET_H #include +#endif #include "ev_dfg.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) +#define waitpid(x, tmp, z) { WaitForSingleObject(OpenProcess(0,0,(DWORD)x), INFINITE); GetExitCodeProcess(OpenProcess(0,0,(DWORD)x), tmp);} #else #include #endif @@ -139,7 +143,7 @@ run_subprocess(char **args) { static int count = 0; #ifdef HAVE_WINDOWS_H - int child; + intptr_t child; child = _spawnv(_P_NOWAIT, "./evtest.exe", args); if (child == -1) { printf("failed for evtest\n"); @@ -284,10 +288,10 @@ main(int argc, char **argv) printf("Missing --ssh destination\n"); usage(); } - first_colon = index(argv[2], ':'); + first_colon = strchr(argv[2], ':'); if (first_colon) { *first_colon = 0; - second_colon = index(first_colon+1, ':'); + second_colon = strchr(first_colon+1, ':'); } else { second_colon = NULL; } @@ -328,7 +332,7 @@ main(int argc, char **argv) argc--; } if (remote_directory[0] != 0) { - if (rindex(argv0, '/')) argv0 = rindex(argv0, '/') + 1; + if (strrchr(argv0, '/')) argv0 = strrchr(argv0, '/') + 1; subproc_args[cur_subproc_arg] = malloc(strlen(remote_directory) + strlen(argv0) + 4); strcpy(subproc_args[cur_subproc_arg], remote_directory); diff --git a/dfg_tests/test_support.h b/dfg_tests/test_support.h index 98efc13a2e..e72b4b9a0f 100644 --- a/dfg_tests/test_support.h +++ b/dfg_tests/test_support.h @@ -1,4 +1,8 @@ #include "evpath.h" +#ifdef _MSC_VER +#define pid_t intptr_t +#include +#endif typedef struct _complex_rec { double r; diff --git a/dfg_tests/tree_test.c b/dfg_tests/tree_test.c index b55718b55e..d157647986 100644 --- a/dfg_tests/tree_test.c +++ b/dfg_tests/tree_test.c @@ -2,9 +2,11 @@ #include #include #include +#include "config.h" +#ifdef HAVE_UNISTD_H #include +#endif -#include "config.h" #include "ev_dfg.h" #include "test_support.h" @@ -25,6 +27,14 @@ simple_handler(CManager cm, void *vevent, void *client_data, attr_list attrs) } +static void +fail_and_die(int signal) +{ + (void)signal; + fprintf(stderr, "tree_test failed to complete in reasonable time\n"); + exit(1); +} + extern int be_test_master(int argc, char **argv) { @@ -43,7 +53,11 @@ be_test_master(int argc, char **argv) EVclient_sinks sink_capabilities; EVclient_sources source_capabilities; - alarm(240); /* reset time limit to 4 minutes */ +#ifdef HAVE_WINDOWS_H + SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); +#else + alarm(300); +#endif if (argc == 1) { sscanf(argv[0], "%d", &level_count); } diff --git a/dlloader.c b/dlloader.c index eedaf678bf..e4c5ad3791 100644 --- a/dlloader.c +++ b/dlloader.c @@ -1,11 +1,75 @@ #include "config.h" +#ifndef _MSC_VER #include +#endif #include #include #include #include "dlloader.h" static char **search_list = NULL; +#ifdef _MSC_VER +#include + +static struct { + long lasterror; + const char* err_rutin; +} var = { + 0, + NULL +}; + +void* dlopen(const char* filename, int flags) +{ + HINSTANCE hInst; + + hInst = LoadLibrary(filename); + if (hInst == NULL) { + var.lasterror = GetLastError(); + var.err_rutin = "dlopen"; + } + return hInst; +} + +int dlclose(void* handle) +{ + BOOL ok; + int rc = 0; + + ok = FreeLibrary((HINSTANCE)handle); + if (!ok) { + var.lasterror = GetLastError(); + var.err_rutin = "dlclose"; + rc = -1; + } + return rc; +} + +void* dlsym(void* handle, const char* name) +{ + FARPROC fp; + + fp = GetProcAddress((HINSTANCE)handle, name); + if (!fp) { + var.lasterror = GetLastError(); + var.err_rutin = "dlsym"; + } + return (void*)(intptr_t)fp; +} + +const char* dlerror(void) +{ + static char errstr[88]; + + if (var.lasterror) { + sprintf(errstr, "%s error #%ld", var.err_rutin, var.lasterror); + return errstr; + } + else { + return NULL; + } +} +#endif void CMdladdsearchdir(char *string) @@ -33,6 +97,7 @@ CMset_dlopen_verbose(int verbose) { dlopen_verbose = verbose; } +#undef dlopen void * CMdlopen(void *CMTrace_filev, char *in_lib, int mode) @@ -48,13 +113,13 @@ CMdlopen(void *CMTrace_filev, char *in_lib, int mode) if (dlopen_verbose == -1) { dlopen_verbose = (getenv("CMTransportVerbose") != NULL); } - tmp = rindex(in_lib, '.'); + tmp = strrchr(in_lib, '.'); if (dlopen_verbose) fprintf(CMTrace_file, "Trying to dlopen %s\n", in_lib); if (tmp && (strcmp(tmp, ".la") == 0)) { /* can't open .la files */ lib = malloc(strlen(in_lib) + strlen(MODULE_EXT) + 8); strcpy(lib, in_lib); - strcpy(rindex(lib, '.'), MODULE_EXT); + strcpy(strrchr(lib, '.'), MODULE_EXT); if (dlopen_verbose) fprintf(CMTrace_file, "Dlopen module name replaced, now %s\n", lib); } else { lib = strdup(in_lib); @@ -64,7 +129,7 @@ CMdlopen(void *CMTrace_filev, char *in_lib, int mode) char *tmp = malloc(strlen(list[0]) + strlen(lib) + 2); sprintf(tmp, "%s/%s", list[0], lib); handle = dlopen(tmp, RTLD_LAZY); - char *err = dlerror(); + const char *err = dlerror(); if (dlopen_verbose) { if (err) { fprintf(CMTrace_file, "Failed to dlopen %s, error is %s\n", tmp, err); @@ -78,7 +143,7 @@ CMdlopen(void *CMTrace_filev, char *in_lib, int mode) } if (!handle) { handle = dlopen(lib, RTLD_LAZY); - char *err = dlerror(); + const char *err = dlerror(); if (dlopen_verbose) { if (err) { fprintf(CMTrace_file, "Failed to dlopen %s, error is %s\n", tmp, err); @@ -89,7 +154,7 @@ CMdlopen(void *CMTrace_filev, char *in_lib, int mode) } if (!handle) return NULL; dlh = malloc(sizeof(*dlh)); - tmp = rindex(lib, '/'); /* find name start */ + tmp = strrchr(lib, '/'); /* find name start */ if (!tmp) tmp = lib; char *cm_lib_prefix; @@ -104,7 +169,7 @@ CMdlopen(void *CMTrace_filev, char *in_lib, int mode) dlh->lib_prefix = malloc(strlen(tmp) + 4); strcpy(dlh->lib_prefix, tmp); } - tmp = rindex(dlh->lib_prefix, '.'); + tmp = strrchr(dlh->lib_prefix, '.'); strcpy(tmp, "_LTX_"); /* kill postfix, add _LTX_ */ dlh->dlopen_handle = handle; free(lib); diff --git a/dlloader.h b/dlloader.h index 828be60f92..e0e063097b 100644 --- a/dlloader.h +++ b/dlloader.h @@ -1,4 +1,13 @@ + +#ifndef _MSC_VER #include +#else +#define RTLD_GLOBAL 0x100 /* do not hide entries in this module */ +#define RTLD_LOCAL 0x000 /* hide entries in this module */ + +#define RTLD_LAZY 0x000 /* accept unresolved externs */ +#define RTLD_NOW 0x001 /* abort if module has unresolved externs */ +#endif #define lt_dlopen(x) CMdlopen(cm, x, 0) #define lt_dladdsearchdir(x) CMdladdsearchdir(x) #define lt_dlsym(x, y) CMdlsym(x, y) diff --git a/ev_dfg.c b/ev_dfg.c index b37ca4fbb4..3493e0a431 100644 --- a/ev_dfg.c +++ b/ev_dfg.c @@ -4,8 +4,10 @@ #include #include #include +#ifdef HAVE_UNISTD_H #include -#include +#endif +#include #ifdef HAVE_COD_H #include "cod.h" @@ -79,15 +81,135 @@ static void free_master_msg(EVmaster_msg *msg); static void free_dfg_state(EVdfg_configuration state); static void free_attrs_msg(EVflush_attrs_reconfig_ptr msg); -static FMStructDescRec EVdfg_conn_shutdown_format_list[]; -static FMStructDescRec EVdfg_deploy_ack_format_list[]; -static FMStructDescRec EVdfg_flush_attrs_reconfig_format_list[]; -static FMStructDescRec EVdfg_node_join_format_list[]; -static FMStructDescRec EVdfg_ready_format_list[]; -static FMStructDescRec EVdfg_deploy_format_list[]; -static FMStructDescRec EVdfg_deploy_ack_format_list[]; -static FMStructDescRec EVclient_shutdown_format_list[]; -static FMStructDescRec EVclient_shutdown_contribution_format_list[]; + +static FMField EVleaf_element_flds[] = { + {"name", "string", sizeof(char*), FMOffset(leaf_element*, name)}, + {"FMtype", "string", sizeof(char*), FMOffset(leaf_element*, FMtype)}, + {NULL, NULL, 0, 0} +}; + +static FMField EVnode_join_msg_flds[] = { + {"node_name", "string", sizeof(char*), FMOffset(EVnode_join_ptr, node_name)}, + {"contact_string", "string", sizeof(char*), FMOffset(EVnode_join_ptr, contact_string)}, + {"source_count", "integer", sizeof(int), FMOffset(EVnode_join_ptr, source_count)}, + {"sink_count", "integer", sizeof(int), FMOffset(EVnode_join_ptr, sink_count)}, + {"sources", "source_element[source_count]", sizeof(leaf_element), FMOffset(EVnode_join_ptr, sources)}, + {"sinks", "sink_element[sink_count]", sizeof(leaf_element), FMOffset(EVnode_join_ptr, sinks)}, + {NULL, NULL, 0, 0} +}; + +static FMStructDescRec EVdfg_node_join_format_list[] = { + {"EVdfg_node_join", EVnode_join_msg_flds, sizeof(EVnode_join_msg), NULL}, + {"sink_element", EVleaf_element_flds, sizeof(leaf_element), NULL}, + {"source_element", EVleaf_element_flds, sizeof(leaf_element), NULL}, + {NULL, NULL, 0, NULL} +}; + +static FMField EVready_msg_flds[] = { + {"node_id", "integer", sizeof(int), FMOffset(EVready_ptr, node_id)}, + {NULL, NULL, 0, 0} +}; + +static FMStructDescRec EVdfg_ready_format_list[] = { + {"EVdfg_ready", EVready_msg_flds, sizeof(EVready_msg), NULL}, + {NULL, NULL, 0, NULL} +}; + +static FMField EVdeploy_ack_msg_flds[] = { + {"node_id", "string", sizeof(char*), FMOffset(EVdeploy_ack_ptr, node_id)}, + {NULL, NULL, 0, 0} +}; + +static FMStructDescRec EVdfg_deploy_ack_format_list[] = { + {"EVdfg_deploy_ack", EVdeploy_ack_msg_flds, sizeof(EVdeploy_ack_msg), NULL}, + {NULL, NULL, 0, NULL} +}; + +static FMField EVshutdown_msg_flds[] = { + {"value", "integer", sizeof(int), FMOffset(EVshutdown_ptr, value)}, + {NULL, NULL, 0, 0} +}; + +static FMStructDescRec EVclient_shutdown_format_list[] = { + {"EVclient_shutdown", EVshutdown_msg_flds, sizeof(EVshutdown_msg), NULL}, + {NULL, NULL, 0, NULL} +}; + +static FMField EVshutdown_contribution_msg_flds[] = { + {"value", "integer", sizeof(int), FMOffset(EVshutdown_contribution_ptr, value)}, + {NULL, NULL, 0, 0} +}; + +static FMStructDescRec EVclient_shutdown_contribution_format_list[] = { + {"EVclient_shutdown_contribution", EVshutdown_contribution_msg_flds, sizeof(EVshutdown_contribution_msg), NULL}, + {NULL, NULL, 0, NULL} +}; + +static FMField EVconn_shutdown_msg_flds[] = { + {"stone", "integer", sizeof(int), FMOffset(EVconn_shutdown_ptr, stone)}, + {NULL, NULL, 0, 0} +}; + +static FMStructDescRec EVdfg_conn_shutdown_format_list[] = { + {"EVdfg_conn_shutdown", EVconn_shutdown_msg_flds, sizeof(EVconn_shutdown_msg), NULL}, + {NULL, NULL, 0, NULL} +}; + +static FMField EVattr_stone_flds[] = { + {"stone", "integer", sizeof(long), FMOffset(EVattr_stone_ptr, stone)}, + {"attr_str", "string", sizeof(char*), FMOffset(EVattr_stone_ptr, attr_str)}, + {NULL, NULL, 0, 0} +}; + +static FMField EVflush_attrs_reconfig_msg_flds[] = { + {"reconfig", "integer", sizeof(int), FMOffset(EVflush_attrs_reconfig_ptr, reconfig)}, + {"count", "integer", sizeof(long), FMOffset(EVflush_attrs_reconfig_ptr, count)}, + {"attr_stone_list", "attr_stone_element[count]", sizeof(EVattr_stone_struct), FMOffset(EVflush_attrs_reconfig_ptr, attr_stone_list)}, + {NULL, NULL, 0, 0} +}; + +static FMStructDescRec EVdfg_flush_attrs_reconfig_format_list[] = { + {"EVflush_attrs_reconfig", EVflush_attrs_reconfig_msg_flds, sizeof(EVflush_attrs_reconfig_msg), NULL}, + {"attr_stone_element", EVattr_stone_flds, sizeof(EVattr_stone_struct), NULL}, + {NULL, NULL, 0, NULL} +}; + +static FMField EVdfg_stone_flds[] = { + {"global_stone_id", "integer", sizeof(int), + FMOffset(deploy_msg_stone, global_stone_id)}, + {"attrs", "string", sizeof(char*), + FMOffset(deploy_msg_stone, attrs)}, + {"period_secs", "integer", sizeof(int), + FMOffset(deploy_msg_stone, period_secs)}, + {"period_usecs", "integer", sizeof(int), + FMOffset(deploy_msg_stone, period_usecs)}, + {"out_count", "integer", sizeof(int), + FMOffset(deploy_msg_stone, out_count)}, + {"out_links", "integer[out_count]", sizeof(int), + FMOffset(deploy_msg_stone, out_links)}, + {"action", "string", sizeof(char*), + FMOffset(deploy_msg_stone, action)}, + {"extra_actions", "integer", sizeof(int), + FMOffset(deploy_msg_stone, extra_actions)}, + {"xactions", "string[extra_actions]", sizeof(char*), + FMOffset(deploy_msg_stone, xactions)}, + {NULL, NULL, 0, 0} +}; + +static FMField EVdfg_deploy_msg_flds[] = { + {"canonical_name", "string", sizeof(char*), + FMOffset(EVdfg_deploy_ptr, canonical_name)}, + {"stone_count", "integer", sizeof(int), + FMOffset(EVdfg_deploy_ptr, stone_count)}, + {"stone_list", "EVdfg_deploy_stone[stone_count]", sizeof(struct _EVdfg_msg_stone), FMOffset(EVdfg_deploy_ptr, stone_list)}, + {NULL, NULL, 0, 0} +}; + +static FMStructDescRec EVdfg_deploy_format_list[] = { + {"EVdfg_deploy", EVdfg_deploy_msg_flds, sizeof(EVdfg_deploy_msg), NULL}, + {"EVdfg_deploy_stone", EVdfg_stone_flds, sizeof(struct _EVdfg_msg_stone), NULL}, + {NULL, NULL, 0, NULL} +}; /* msg action model @@ -176,9 +298,10 @@ EVdfg_stone INT_EVdfg_create_source_stone(EVdfg dfg, char *source_name) { EVdfg_stone tmp; - int len = strlen(source_name) + strlen("source:"); + size_t len = strlen(source_name) + strlen("source:"); char *act = malloc(len + 1); - strcpy(stpcpy(&act[0], "source:"), source_name); + strcpy(&act[0], "source:"); + strcat(&act[0], source_name); tmp = INT_EVdfg_create_stone(dfg, &act[0]); free(act); return tmp; @@ -187,9 +310,10 @@ INT_EVdfg_create_source_stone(EVdfg dfg, char *source_name) extern void INT_EVdfg_add_sink_action(EVdfg_stone stone, char *sink_name) { - int len = strlen(sink_name) + strlen("sink:"); + size_t len = strlen(sink_name) + strlen("sink:"); char *act = malloc(len + 1); - strcpy(stpcpy(&act[0], "sink:"), sink_name); + strcpy(&act[0], "sink:"); + strcat(&act[0], sink_name); INT_EVdfg_add_action(stone, &act[0]); free(act); } @@ -198,9 +322,10 @@ EVdfg_stone INT_EVdfg_create_sink_stone(EVdfg dfg, char *sink_name) { EVdfg_stone tmp; - int len = strlen(sink_name) + strlen("sink:"); + size_t len = strlen(sink_name) + strlen("sink:"); char *act = malloc(len + 1); - strcpy(stpcpy(&act[0], "sink:"), sink_name); + strcpy(&act[0], "sink:"); + strcat(&act[0], sink_name); tmp = INT_EVdfg_create_stone(dfg, &act[0]); free(act); return tmp; @@ -1457,7 +1582,7 @@ INT_EVdfg_create(EVmaster master) extern char *INT_EVmaster_get_contact_list(EVmaster master) { - attr_list listen_list, contact_list = NULL; + attr_list contact_list = NULL; atom_t CM_TRANSPORT = attr_atom_from_string("CM_TRANSPORT"); atom_t CM_ENET_CONN_TIMEOUT = attr_atom_from_string("CM_ENET_CONN_TIMEOUT"); CManager cm = master->cm; @@ -1465,7 +1590,7 @@ extern char *INT_EVmaster_get_contact_list(EVmaster master) /* use enet transport if available */ #if defined(ENET_FOUND) || defined(ZPL_ENET_AVAILABLE) - listen_list = create_attr_list(); + attr_list listen_list = create_attr_list(); #if defined(ENET_FOUND) add_string_attr(listen_list, CM_TRANSPORT, strdup("enet")); #elif defined(ZPL_ENET_AVAILABLE) @@ -1636,6 +1761,7 @@ INT_EVclient_ready_wait(EVclient client) client->ready_condition = -1; CMtrace_out(client->cm, EVdfgVerbose, "DFG %p ready wait released\n", client); return 1; + } extern int @@ -1835,8 +1961,8 @@ dfg_assoc_client(CManager cm, char* node_name, char *master_contact, EVmaster ma fprintf(stderr, "Only one call to EVclient_assoc() or EVclient_assoc_local() per CManager allowed.\n"); return NULL; } - dfg_extern_map[0].extern_value = (void*)(long)cod_EVdfg_trigger_reconfig; - dfg_extern_map[1].extern_value = (void*)(long)cod_EVdfg_flush_attrs; + dfg_extern_map[0].extern_value = (void*)(intptr_t)cod_EVdfg_trigger_reconfig; + dfg_extern_map[1].extern_value = (void*)(intptr_t)cod_EVdfg_flush_attrs; INT_EVadd_standard_routines(cm, dfg_extern_string, dfg_extern_map); @@ -2769,132 +2895,3 @@ check_all_nodes_registered(EVmaster master) dfg->deployed_stone_count = dfg->stone_count; master->old_node_count = master->node_count; } - -static FMField EVleaf_element_flds[] = { - {"name", "string", sizeof(char*), FMOffset(leaf_element*, name)}, - {"FMtype", "string", sizeof(char*), FMOffset(leaf_element*, FMtype)}, - {NULL, NULL, 0, 0} -}; - -static FMField EVnode_join_msg_flds[] = { - {"node_name", "string", sizeof(char*), FMOffset(EVnode_join_ptr, node_name)}, - {"contact_string", "string", sizeof(char*), FMOffset(EVnode_join_ptr, contact_string)}, - {"source_count", "integer", sizeof(int), FMOffset(EVnode_join_ptr, source_count)}, - {"sink_count", "integer", sizeof(int), FMOffset(EVnode_join_ptr, sink_count)}, - {"sources", "source_element[source_count]", sizeof(leaf_element), FMOffset(EVnode_join_ptr, sources)}, - {"sinks", "sink_element[sink_count]", sizeof(leaf_element), FMOffset(EVnode_join_ptr, sinks)}, - {NULL, NULL, 0, 0} -}; - -static FMStructDescRec EVdfg_node_join_format_list[] = { - {"EVdfg_node_join", EVnode_join_msg_flds, sizeof(EVnode_join_msg), NULL}, - {"sink_element", EVleaf_element_flds, sizeof(leaf_element), NULL}, - {"source_element", EVleaf_element_flds, sizeof(leaf_element), NULL}, - {NULL, NULL, 0, NULL} -}; - -static FMField EVready_msg_flds[] = { - {"node_id", "integer", sizeof(int), FMOffset(EVready_ptr, node_id)}, - {NULL, NULL, 0, 0} -}; - -static FMStructDescRec EVdfg_ready_format_list[] = { - {"EVdfg_ready", EVready_msg_flds, sizeof(EVready_msg), NULL}, - {NULL, NULL, 0, NULL} -}; - -static FMField EVdeploy_ack_msg_flds[] = { - {"node_id", "string", sizeof(char*), FMOffset(EVdeploy_ack_ptr, node_id)}, - {NULL, NULL, 0, 0} -}; - -static FMStructDescRec EVdfg_deploy_ack_format_list[] = { - {"EVdfg_deploy_ack", EVdeploy_ack_msg_flds, sizeof(EVdeploy_ack_msg), NULL}, - {NULL, NULL, 0, NULL} -}; - -static FMField EVshutdown_msg_flds[] = { - {"value", "integer", sizeof(int), FMOffset(EVshutdown_ptr, value)}, - {NULL, NULL, 0, 0} -}; - -static FMStructDescRec EVclient_shutdown_format_list[] = { - {"EVclient_shutdown", EVshutdown_msg_flds, sizeof(EVshutdown_msg), NULL}, - {NULL, NULL, 0, NULL} -}; - -static FMField EVshutdown_contribution_msg_flds[] = { - {"value", "integer", sizeof(int), FMOffset(EVshutdown_contribution_ptr, value)}, - {NULL, NULL, 0, 0} -}; - -static FMStructDescRec EVclient_shutdown_contribution_format_list[] = { - {"EVclient_shutdown_contribution", EVshutdown_contribution_msg_flds, sizeof(EVshutdown_contribution_msg), NULL}, - {NULL, NULL, 0, NULL} -}; - -static FMField EVconn_shutdown_msg_flds[] = { - {"stone", "integer", sizeof(int), FMOffset(EVconn_shutdown_ptr, stone)}, - {NULL, NULL, 0, 0} -}; - -static FMStructDescRec EVdfg_conn_shutdown_format_list[] = { - {"EVdfg_conn_shutdown", EVconn_shutdown_msg_flds, sizeof(EVconn_shutdown_msg), NULL}, - {NULL, NULL, 0, NULL} -}; - -static FMField EVattr_stone_flds[] = { - {"stone", "integer", sizeof(long), FMOffset(EVattr_stone_ptr, stone)}, - {"attr_str", "string", sizeof(char*), FMOffset(EVattr_stone_ptr, attr_str)}, - {NULL, NULL, 0, 0} -}; - -static FMField EVflush_attrs_reconfig_msg_flds[] = { - {"reconfig", "integer", sizeof(int), FMOffset(EVflush_attrs_reconfig_ptr, reconfig)}, - {"count", "integer", sizeof(long), FMOffset(EVflush_attrs_reconfig_ptr, count)}, - {"attr_stone_list", "attr_stone_element[count]", sizeof(EVattr_stone_struct), FMOffset(EVflush_attrs_reconfig_ptr, attr_stone_list)}, - {NULL, NULL, 0, 0} -}; - -static FMStructDescRec EVdfg_flush_attrs_reconfig_format_list[] = { - {"EVflush_attrs_reconfig", EVflush_attrs_reconfig_msg_flds, sizeof(EVflush_attrs_reconfig_msg), NULL}, - {"attr_stone_element", EVattr_stone_flds, sizeof(EVattr_stone_struct), NULL}, - {NULL, NULL, 0, NULL} -}; - -static FMField EVdfg_stone_flds[] = { - {"global_stone_id", "integer", sizeof(int), - FMOffset(deploy_msg_stone, global_stone_id)}, - {"attrs", "string", sizeof(char*), - FMOffset(deploy_msg_stone, attrs)}, - {"period_secs", "integer", sizeof(int), - FMOffset(deploy_msg_stone, period_secs)}, - {"period_usecs", "integer", sizeof(int), - FMOffset(deploy_msg_stone, period_usecs)}, - {"out_count", "integer", sizeof(int), - FMOffset(deploy_msg_stone, out_count)}, - {"out_links", "integer[out_count]", sizeof(int), - FMOffset(deploy_msg_stone, out_links)}, - {"action", "string", sizeof(char*), - FMOffset(deploy_msg_stone, action)}, - {"extra_actions", "integer", sizeof(int), - FMOffset(deploy_msg_stone, extra_actions)}, - {"xactions", "string[extra_actions]", sizeof(char*), - FMOffset(deploy_msg_stone, xactions)}, - {NULL, NULL, 0, 0} -}; - -static FMField EVdfg_deploy_msg_flds[] = { - {"canonical_name", "string", sizeof(char*), - FMOffset(EVdfg_deploy_ptr, canonical_name)}, - {"stone_count", "integer", sizeof(int), - FMOffset(EVdfg_deploy_ptr, stone_count)}, - {"stone_list", "EVdfg_deploy_stone[stone_count]", sizeof(struct _EVdfg_msg_stone), FMOffset(EVdfg_deploy_ptr, stone_list)}, - {NULL, NULL, 0, 0} -}; - -static FMStructDescRec EVdfg_deploy_format_list[] = { - {"EVdfg_deploy", EVdfg_deploy_msg_flds, sizeof(EVdfg_deploy_msg), NULL}, - {"EVdfg_deploy_stone", EVdfg_stone_flds, sizeof(struct _EVdfg_msg_stone), NULL}, - {NULL, NULL, 0, NULL} -}; diff --git a/ev_internal.h b/ev_internal.h index c2218e4a01..f787a372b9 100644 --- a/ev_internal.h +++ b/ev_internal.h @@ -8,7 +8,7 @@ typedef struct _event_item { int event_encoded; event_pkg_contents contents; void *encoded_event; - size_t event_len; + ssize_t event_len; void *decoded_event; FFSEncodeVector encoded_eventv; FMFormat reference_format; @@ -234,7 +234,7 @@ typedef struct _EVclient_sources { typedef struct _ev_handler_activation_rec { struct _ev_handler_activation_rec *prev; - pthread_t thread_id; + thr_thread_t thread_id; EVstone stone_id; struct _ev_handler_activation_rec *next; } ev_handler_activation_rec, *ev_handler_activation_ptr; @@ -325,7 +325,7 @@ extern void REVPinit(CManager cm); extern int internal_write_event(CMConnection conn, CMFormat format, void *remote_path_id, int path_len, event_item *event, - attr_list attrs, long *event_len_p); + attr_list attrs, size_t *event_len_p); extern EVaction INT_EVassoc_mutated_imm_action(CManager cm, EVstone stone, EVaction act_num, EVImmediateHandlerFunc func, void *client_data, @@ -372,7 +372,7 @@ extern void INT_EVsubmit_general(EVsource source, void *data, EVFreeFunction free_func, attr_list attrs); extern void -INT_EVsubmit_encoded(CManager cm, EVstone stone, void *data, int data_len, attr_list attrs); +INT_EVsubmit_encoded(CManager cm, EVstone stone, void *data, size_t data_len, attr_list attrs); extern EVsource INT_EVcreate_submit_handle_free(CManager cm, EVstone stone, FMStructDescList data_format, diff --git a/evp.c b/evp.c index 1d23d5d860..f72ddb0cf8 100644 --- a/evp.c +++ b/evp.c @@ -5,8 +5,10 @@ #include #include #include -#include +#include +#ifdef HAVE_UNISTD_H #include +#endif #include #include "evpath.h" @@ -1253,7 +1255,7 @@ decode_action(CManager cm, event_item *event, response_cache_element *act) void *decode_buffer; if (!FFSdecode_in_place(act->o.decode.context, event->encoded_event, - (void**) (long) &decode_buffer)) { + (void**) (intptr_t) &decode_buffer)) { printf("Decode failed\n"); return 0; } @@ -1263,7 +1265,7 @@ decode_action(CManager cm, event_item *event, response_cache_element *act) event->reference_format = act->o.decode.target_reference_format; return event; } else { - int decoded_length = FFS_est_decode_length(act->o.decode.context, + size_t decoded_length = FFS_est_decode_length(act->o.decode.context, event->encoded_event, event->event_len); CMbuffer cm_decode_buf = cm_get_data_buf(cm, decoded_length); @@ -1284,7 +1286,7 @@ decode_action(CManager cm, event_item *event, response_cache_element *act) case Event_App_Owned: { /* can't do anything with the old event, make a new one */ - int decoded_length = FFS_est_decode_length(act->o.decode.context, + size_t decoded_length = FFS_est_decode_length(act->o.decode.context, event->encoded_event, event->event_len); event_item *new_event = get_free_event(evp); @@ -1330,7 +1332,7 @@ encode_event(CManager cm, event_item *event) event->encoded_event = FFSencode(event->ioBuffer, event->reference_format, event->decoded_event, - &event->event_len); + (size_t*)&event->event_len); event->event_encoded = 1; } @@ -1434,9 +1436,9 @@ fdump_action(FILE* out, stone_type stone, response_cache_element *resp, int a, c fprintf(out, "\n"); switch(act->action_type) { case Action_Bridge: - fprintf(out, " Target: %s: connection %lx, remote_stone_id %d\n", + fprintf(out, " Target: %s: connection %p, remote_stone_id %d\n", (act->o.bri.remote_path ? act->o.bri.remote_path : "NULL" ), - (long)(void*)act->o.bri.conn, act->o.bri.remote_stone_id); + (void*)act->o.bri.conn, act->o.bri.remote_stone_id); if (act->o.bri.conn != NULL) fdump_attr_list(out, act->o.bri.conn->attrs); if (act->o.bri.conn_failed) fprintf(out, "Connection has FAILED!\n"); break; @@ -1486,8 +1488,8 @@ static void fdump_stone(FILE* out, stone_type stone) { int i; - fprintf(out, "Dump stone ID %d, local addr %lx, default action %d\n", - stone->local_id, (long)stone, stone->default_action); + fprintf(out, "Dump stone ID %d, local addr %p, default action %d\n", + stone->local_id, stone, stone->default_action); fprintf(out, " Target Stones:"); { int i; @@ -1616,7 +1618,7 @@ static void push_activation_record_on_stack(CManager cm, ev_handler_activation_ptr rec) { event_path_data evp = cm->evp; - rec->thread_id = pthread_self(); + rec->thread_id = thr_thread_self(); if (evp->activation_stack != NULL) { evp->activation_stack->prev = rec; } @@ -1630,7 +1632,7 @@ pop_activation_record_from_stack(CManager cm, ev_handler_activation_ptr rec) { event_path_data evp = cm->evp; ev_handler_activation_ptr tmp; - pthread_t self = pthread_self(); + thr_thread_t self = thr_thread_self(); if (!evp->activation_stack) { printf("Activation stack inconsistency! No records!\n"); return; @@ -1661,7 +1663,7 @@ find_activation_record_from_stack(CManager cm) { event_path_data evp = cm->evp; ev_handler_activation_ptr tmp; - pthread_t self = pthread_self(); + thr_thread_t self = thr_thread_self(); tmp = evp->activation_stack; while(tmp) { if (tmp->thread_id == self) { @@ -1746,7 +1748,7 @@ process_events_stone(CManager cm, int s, action_class c) char *tmp = NULL; if (event->reference_format) tmp = global_name_of_FMFormat(event->reference_format); - printf("No action found for event %lx submitted to \n", (long)event); + printf("No action found for event %p submitted to \n", event); print_stone_identifier(evp, s); printf("\n"); dump_stone(stone_struct(evp, s)); @@ -1782,7 +1784,7 @@ process_events_stone(CManager cm, int s, action_class c) resp = &stone->response_cache[resp_id]; } if (CMtrace_on(cm, EVerbose)) { - fprintf(cm->CMTrace_file, "next action event %lx on ", (long)event); + fprintf(cm->CMTrace_file, "next action event %p on ", event); fprint_stone_identifier(cm->CMTrace_file, evp, s); fprintf(cm->CMTrace_file, " action type is %s, reference_format is %p (%s), stage is %d, requires_decoded is %d\n", action_str[resp->action_type], resp->reference_format, @@ -2046,7 +2048,7 @@ static void stone_close_handler(CManager cm, CMConnection conn, void *client_data) { event_path_data evp = cm->evp; - int s = (long)client_data; /* stone ID */ + int s = (int)(intptr_t)client_data; /* stone ID */ int a = 0; stone_type stone; EVStoneCloseHandlerFunc handler = NULL; @@ -2181,7 +2183,7 @@ do_bridge_action(CManager cm, int s) return -1; } INT_CMconn_register_close_handler(conn, stone_close_handler, - (void*)(long)s); + (void*)(intptr_t)s); } while (stone->queue->queue_head != NULL) { int ret = 1; @@ -2214,7 +2216,7 @@ do_bridge_action(CManager cm, int s) }*/ } event_item *event = dequeue_event(cm, stone); - long event_length = 0; + size_t event_length = 0; if (act->o.bri.conn == NULL) { CMtrace_out(cm, EVerbose, "Bridge stone %x has closed connection\n", s); } else { @@ -2260,7 +2262,7 @@ do_bridge_action(CManager cm, int s) } else { static atom_t EV_EVENT_COUNT = -1; static atom_t EV_EVENT_LSUM = -1; - int length_sum = 0; + ssize_t length_sum = 0; int event_count = 0; if (EV_EVENT_COUNT == -1) { EV_EVENT_COUNT = attr_atom_from_string("EV_EVENT_COUNT"); @@ -2270,12 +2272,12 @@ do_bridge_action(CManager cm, int s) stone->stone_attrs = create_attr_list(); } else { get_int_attr(stone->stone_attrs, EV_EVENT_COUNT, &event_count); - get_int_attr(stone->stone_attrs, EV_EVENT_LSUM, &length_sum); + get_long_attr(stone->stone_attrs, EV_EVENT_LSUM, &length_sum); } event_count++; length_sum += event_length; set_int_attr(stone->stone_attrs, EV_EVENT_COUNT, event_count); - set_int_attr(stone->stone_attrs, EV_EVENT_LSUM, length_sum); + set_long_attr(stone->stone_attrs, EV_EVENT_LSUM, length_sum); } } stone->is_outputting = 0; @@ -2519,7 +2521,7 @@ INT_EVassoc_bridge_action(CManager cm, EVstone stone_num, attr_list contact_list return -1; } INT_CMconn_register_close_handler(conn, stone_close_handler, - (void*)(long)stone_num); + (void*)(intptr_t)stone_num); } stone->proto_actions = realloc(stone->proto_actions, (action_num + 1) * @@ -3158,7 +3160,7 @@ EVregister_format_set(CManager cm, FMStructDescList list) static void EVauto_submit_func(CManager cm, void* vstone) { - int stone_num = (long) vstone; + int stone_num = (int)(intptr_t) vstone; event_item *event; CManager_lock(cm); event = get_free_event(cm->evp); @@ -3213,7 +3215,7 @@ INT_EVenable_auto_stone(CManager cm, EVstone stone_num, int period_sec, } handle = INT_CMadd_periodic_task(cm, period_sec, period_usec, EVauto_submit_func, - (void*)(long)stone_num); + (void*)(intptr_t)stone_num); stone->periodic_handle = handle; if (CMtrace_on(cm, EVerbose)) { fprintf(cm->CMTrace_file, "Enabling auto events on "); @@ -3271,7 +3273,7 @@ reference_event(event_item *event) extern void internal_cm_network_submit(CManager cm, CMbuffer cm_data_buf, attr_list attrs, CMConnection conn, - void *buffer, int length, int stone_id) + void *buffer, size_t length, int stone_id) { event_path_data evp = cm->evp; event_item *event = get_free_event(evp); @@ -3444,7 +3446,7 @@ INT_EVsubmit(EVsource source, void *data, attr_list attrs) } void -INT_EVsubmit_encoded(CManager cm, EVstone stone, void *data, int data_len, attr_list attrs) +INT_EVsubmit_encoded(CManager cm, EVstone stone, void *data, size_t data_len, attr_list attrs) { event_path_data evp = cm->evp; event_item *event = get_free_event(evp); @@ -3470,7 +3472,7 @@ free_evp(CManager cm, void *not_used) event_path_data evp = cm->evp; int s; (void)not_used; - CMtrace_out(cm, CMFreeVerbose, "Freeing evpath information, evp %lx\n", (long) evp); + CMtrace_out(cm, CMFreeVerbose, "Freeing evpath information, evp %p\n", evp); for (s = 0 ; s < evp->stone_count; s++) { INT_EVfree_stone(cm, s + evp->stone_base_num); } @@ -3521,9 +3523,9 @@ EVPinit(CManager cm) * just so that we're more likely to catch mitmatched stone/CM * combos in threaded situations. */ - srand48(time(NULL)); + srand((int)time(NULL)); while (cm->evp->stone_base_num == 0) { - cm->evp->stone_base_num = lrand48() & 0xffff; + cm->evp->stone_base_num = rand() & 0xffff; } } CMtrace_out(cm, EVerbose, "INITATED EVPATH, base stone num is %x\n", @@ -3574,8 +3576,8 @@ INT_EVtake_event_buffer(CManager cm, void *event) } if (cur == NULL) { fprintf(stderr, - "Event address (%lx) in INT_EVtake_event_buffer does not match currently executing event on this CM.\n", - (long) event); + "Event address (%p) in INT_EVtake_event_buffer does not match currently executing event on this CM.\n", + event); return 0; } @@ -3630,8 +3632,8 @@ INT_EVreturn_event_buffer(CManager cm, void *event) last = tmp; tmp = tmp->next; } - fprintf(stderr, "Event %lx not found in taken events list\n", - (long) event); + fprintf(stderr, "Event %p not found in taken events list\n", + event); } extern FMFormat diff --git a/evp_threads.c b/evp_threads.c index 9360e0264c..cd22b3aba6 100644 --- a/evp_threads.c +++ b/evp_threads.c @@ -5,8 +5,10 @@ #include #include #include -#include +#include +#ifdef HAVE_UNISTD_H #include +#endif #include "evpath.h" #include "cm_internal.h" diff --git a/evpath.h b/evpath.h index e9151e1e14..37e6b7b992 100644 --- a/evpath.h +++ b/evpath.h @@ -57,7 +57,7 @@ typedef struct _CMTaskHandle *CMTaskHandle; * and a pointer to their locations. */ typedef struct buf_entry { - long length; /*!< length of the encoded buffer */ + size_t length; /*!< length of the encoded buffer */ void *buffer; /*!< base address of the encoded buffer */ } *EVevent_list; @@ -590,7 +590,7 @@ extern void CMreturn_buffer (CManager cm, void *data); * Otherwise return the number of additional bytes necessary. */ typedef int (*CMNonCMHandler) (CMConnection conn, CMTransport transport, - char *buffer, long length); + char *buffer, size_t length); /*! * register a handler for raw (non-CM) messages. @@ -842,7 +842,7 @@ typedef void (*select_func) (void *param1, void*param2); * \param param2 The value to be passed as param2 to the handler_func. */ extern void -CM_fd_add_select (CManager cm, int fd, select_func handler_func, +CM_fd_add_select (CManager cm, SOCKET fd, select_func handler_func, void *param1, void *param2); /*! @@ -1182,7 +1182,7 @@ typedef int (*EVSimpleHandlerFunc) (CManager cm, void *message, void *client_dat * was delivered with. These are determined by the transport and may * include those specified in CMwrite_attr() when the data was written. */ -typedef int (*EVRawHandlerFunc) (CManager cm, void *message, int msg_len, void *client_data, +typedef int (*EVRawHandlerFunc) (CManager cm, void *message, size_t msg_len, void *client_data, attr_list attrs); /*! @@ -1927,7 +1927,7 @@ EVsubmit_general(EVsource source, void *data, EVFreeFunction free_func, * */ extern void -EVsubmit_encoded(CManager cm, EVstone stone, void *data, int data_len, +EVsubmit_encoded(CManager cm, EVstone stone, void *data, size_t data_len, attr_list attrs); /*! @@ -2377,7 +2377,7 @@ CMtest_transport(CMConnection conn, attr_list how); * contain the final values of testing. * */ -typedef attr_list (*CMperf_upcall)(CManager cm, void *buffer, long length, int type, attr_list list); +typedef attr_list (*CMperf_upcall)(CManager cm, void *buffer, size_t length, int type, attr_list list); /*! * install the callback function to support transport testing diff --git a/examples/derived_recv.c b/examples/derived_recv.c index 18eaa460e4..fe2775201c 100644 --- a/examples/derived_recv.c +++ b/examples/derived_recv.c @@ -41,7 +41,7 @@ int main(int argc, char **argv) string_list = attr_list_to_string(CMget_contact_list(cm)); filter_spec = create_filter_action_spec(simple_format_list, "{ return input.integer_field % 2;}"); - encoded_filter_spec = atl_base64_encode(filter_spec, strlen(filter_spec) + 1); + encoded_filter_spec = atl_base64_encode(filter_spec, (unsigned int) strlen(filter_spec) + 1); printf("Contact list \"%d:%s:%s\"\n", stone, string_list, encoded_filter_spec); free(filter_spec); free(encoded_filter_spec); diff --git a/examples/transform_recv.c b/examples/transform_recv.c index b87bc0977c..c82af11f7f 100644 --- a/examples/transform_recv.c +++ b/examples/transform_recv.c @@ -76,7 +76,7 @@ int main(int argc, char **argv) trans_spec = create_transform_action_spec(simple_format_list, output_format_list, trans_func); printf("trns spec is %s\n", trans_spec); - encoded_trans_spec = atl_base64_encode(trans_spec, strlen(trans_spec) + 1); + encoded_trans_spec = atl_base64_encode(trans_spec, (unsigned int) strlen(trans_spec) + 1); printf("Contact list \"%d:%s:%s\"\n", stone, string_list, encoded_trans_spec); free(trans_spec); free(encoded_trans_spec); diff --git a/examples/transform_recv2.c b/examples/transform_recv2.c index cc03d6c6de..1ef50c81ee 100644 --- a/examples/transform_recv2.c +++ b/examples/transform_recv2.c @@ -98,8 +98,8 @@ int main(int argc, char **argv) trans_func); trans_spec2 = create_transform_action_spec(second_format_list, output_format_list, trans_func2); - encoded_trans_spec = atl_base64_encode(trans_spec, strlen(trans_spec) + 1); - encoded_trans_spec2 = atl_base64_encode(trans_spec2, strlen(trans_spec2) + 1); + encoded_trans_spec = atl_base64_encode(trans_spec, (unsigned int) strlen(trans_spec) + 1); + encoded_trans_spec2 = atl_base64_encode(trans_spec2, (unsigned int) strlen(trans_spec2) + 1); printf("Contact list \"%d:%s:%s:%s\"\n", stone, string_list, encoded_trans_spec, encoded_trans_spec2); free(trans_spec); diff --git a/examples/transform_recv3.c b/examples/transform_recv3.c index ddf9140625..95adc7eebc 100644 --- a/examples/transform_recv3.c +++ b/examples/transform_recv3.c @@ -110,8 +110,8 @@ int main(int argc, char **argv) trans_func); trans_spec2 = create_transform_action_spec(second_format_list, output_format_list, trans_func2); - encoded_trans_spec = atl_base64_encode(trans_spec, strlen(trans_spec) + 1); - encoded_trans_spec2 = atl_base64_encode(trans_spec2, strlen(trans_spec2) + 1); + encoded_trans_spec = atl_base64_encode(trans_spec, (unsigned int) strlen(trans_spec) + 1); + encoded_trans_spec2 = atl_base64_encode(trans_spec2, (unsigned int) strlen(trans_spec2) + 1); printf("Contact list \"%d:%s:%s:%s\"\n", stone, string_list, encoded_trans_spec, encoded_trans_spec2); free(trans_spec); diff --git a/gen_interface.pl b/gen_interface.pl index b3f07894c2..f76852ba75 100755 --- a/gen_interface.pl +++ b/gen_interface.pl @@ -617,11 +617,22 @@ sub mod_EVhandler { #include "atl.h" #include "evpath.h" #include "stdio.h" -#include "cm_internal.h" #ifdef LT_LIBPREFIX #include "ltdl.h" +#else +#ifdef _MSC_VER +#include +#define RTLD_GLOBAL 1 +#define RTLD_LAZY 2 +extern void* dlopen(const char* filename, int flags); +extern int dlclose(void* handle); +extern void* dlsym(void* handle, const char* name); +extern const char* dlerror(void); + #else #include +#endif + #define lt_dlopen(x) dlopen(x, 0) #define lt_dlsym(x, y) dlsym(x, y) #define lt_dlhandle void* @@ -631,7 +642,7 @@ sub mod_EVhandler { #include "stdio.h" #include "string.h" #include "stdlib.h" -#include +#include "cm_internal.h" #ifdef __cplusplus extern "C" \{ #endif @@ -796,7 +807,7 @@ sub mod_EVhandler { REVPlookup_format_structs(CManager cm, char *format_name) { FMFormat format; - int slen = strlen(format_name); + int slen = (int)strlen(format_name); int i; unsigned char *id = malloc(slen/2); for (i=0; i < slen/2; i++) { diff --git a/ip_config.c b/ip_config.c index 8c8eba9c3b..f52f9e881d 100644 --- a/ip_config.c +++ b/ip_config.c @@ -6,11 +6,16 @@ #ifdef HAVE_SYS_SOCKIO_H #include #endif -#include #ifdef HAVE_WINDOWS_H -#include +#include +#include +#include #define __ANSI_CPP__ +#ifndef INET_ADDRSTRLEN +#define INET_ADDRSTRLEN 50 +#endif #else +#include #include #include #include @@ -19,7 +24,9 @@ #include #endif #include +#ifdef HAVE_UNISTD_H #include +#endif #include #include #ifdef STDC_HEADERS @@ -50,7 +57,7 @@ static int ipv4_is_loopback(int addr) static void dump_output(int length_estimate, char *format, ...); static int -get_self_ip_iface(CMTransport_trace trace_func, void* trace_data, char *interface) +get_self_ip_iface(CMTransport_trace trace_func, void* trace_data, char *iface) { struct hostent *host = NULL; char hostname_buf[256]; @@ -102,30 +109,30 @@ get_self_ip_iface(CMTransport_trace trace_func, void* trace_data, char *interfac // inet_ntop(family, tmp, buf, sizeof(buf))); } } - if (!interface) interface = getenv(IPCONFIG_ENVVAR_PREFIX "INTERFACE"); - if (interface != NULL) { - trace_func(trace_data, "CM searching for interface %s\n", interface); - if (first_call) dump_output(1023, "\t" IPCONFIG_ENVVAR_PREFIX "IP_CONFIG interface %s requested\n", interface); + if (!iface) iface = getenv(IPCONFIG_ENVVAR_PREFIX "INTERFACE"); + if (iface != NULL) { + trace_func(trace_data, "CM searching for interface %s\n", iface); + if (first_call) dump_output(1023, "\t" IPCONFIG_ENVVAR_PREFIX "IP_CONFIG interface %s requested\n", iface); for (if_addr = if_addrs; if_addr != NULL; if_addr = if_addr->ifa_next) { int family; uint32_t IP; if (!if_addr->ifa_addr) continue; family = if_addr->ifa_addr->sa_family; if (family != AF_INET) continue; /* currently not looking for ipv6 */ - if (strncmp(if_addr->ifa_name, interface, strlen(interface)) != 0) continue; + if (strncmp(if_addr->ifa_name, iface, strlen(iface)) != 0) continue; tmp = &((struct sockaddr_in *)if_addr->ifa_addr)->sin_addr; trace_func(trace_data, "CM Interface specified, returning ->%s : %s", if_addr->ifa_name, inet_ntop(family, tmp, buf, sizeof(buf))); if (first_call) - dump_output(1023, "\t" IPCONFIG_ENVVAR_PREFIX "IP_CONFIG interface %s found, using IP %s\n", interface, + dump_output(1023, "\t" IPCONFIG_ENVVAR_PREFIX "IP_CONFIG interface %s found, using IP %s\n", iface, inet_ntop(family, tmp, buf, sizeof(buf))); IP = ntohl(*(uint32_t*)tmp); free(if_addrs); first_call = 0; return IP; } - printf("Warning! " IPCONFIG_ENVVAR_PREFIX "INTERFACE specified as \"%s\", but no active interface by that name found\n", interface); + printf("Warning! " IPCONFIG_ENVVAR_PREFIX "INTERFACE specified as \"%s\", but no active interface by that name found\n", iface); } first_call = 0; @@ -166,7 +173,7 @@ get_self_ip_iface(CMTransport_trace trace_func, void* trace_data, char *interfac } #endif gethostname(hostname_buf, sizeof(hostname_buf)); - if (index(hostname_buf, '.') != NULL) { + if (strchr(hostname_buf, '.') != NULL) { /* don't even check for host if not fully qualified */ host = gethostbyname(hostname_buf); } @@ -387,7 +394,7 @@ get_qual_hostname(char *buf, int len, attr_list attrs, } } if (network_string != NULL) { - int name_len = strlen(buf) + 2 + strlen(network_string); + size_t name_len = strlen(buf) + 2 + strlen(network_string); char *new_name_str = malloc(name_len); char *first_dot = strchr(buf, '.'); @@ -469,13 +476,22 @@ dump_output(int length_estimate, char *format, ...) #endif vsprintf(tmp, format, ap); va_end(ap); - IP_config_output_len += strlen(tmp); + IP_config_output_len += (int)strlen(tmp); if (free_tmp) free(tmp); } #ifndef HOST_NAME_MAX #define HOST_NAME_MAX 255 #endif +#ifdef _MSC_VER +static int inet_aton(const char* cp, struct in_addr* addr) +{ + addr->s_addr = inet_addr(cp); + return (addr->s_addr == INADDR_NONE) ? 0 : 1; +} +#endif + + extern void get_IP_config(char *hostname_buf, int len, int* IP_p, int *port_range_low_p, int *port_range_high_p, int *use_hostname_p, attr_list attrs, CMTransport_trace trace_func, void *trace_data) @@ -487,7 +503,7 @@ get_IP_config(char *hostname_buf, int len, int* IP_p, int *port_range_low_p, int static int use_hostname = 0; char hostname_to_use[HOST_NAME_MAX+1]; int IP_to_use; - char *interface = NULL; + char *iface = NULL; if (first_call) { char *preferred_hostname = getenv(IPCONFIG_ENVVAR_PREFIX "HOSTNAME"); @@ -587,10 +603,10 @@ get_IP_config(char *hostname_buf, int len, int* IP_p, int *port_range_low_p, int } - if (get_string_attr(attrs, CM_IP_INTERFACE, &interface)) { + if (get_string_attr(attrs, CM_IP_INTERFACE, &iface)) { /* don't use predetermined stuff ! */ get_qual_hostname(hostname_to_use, sizeof(hostname_to_use) - 1 , attrs, NULL, trace_func, trace_data); - IP_to_use = get_self_ip_iface(trace_func, trace_data, interface); + IP_to_use = get_self_ip_iface(trace_func, trace_data, iface); } else { strcpy(hostname_to_use, determined_hostname); IP_to_use = determined_IP; diff --git a/metrics.c b/metrics.c index f5a95ab6e9..fdfc365f64 100644 --- a/metrics.c +++ b/metrics.c @@ -4,11 +4,12 @@ #include #include #include -#include #include #include #include +#ifdef HAVE_SYS_TIME_H #include +#endif #include #ifdef HAVE_UNISTD_H #include @@ -18,6 +19,14 @@ #include #endif +#ifdef _MSC_VER +#define open _open +#define read _read +#define close _close +#include +#include +#endif + #ifdef HAVE_MAC_SYSCTL #include #include @@ -85,8 +94,8 @@ char * skip_token (const char *p) int slurpfile(const char *filename, char *buffer, int buflen) { +#ifndef _MSC_VER int fd, read_len; - fd = open(filename, O_RDONLY); if(fd < 0) { printf("open() error on file %s \n", filename); @@ -104,6 +113,9 @@ int slurpfile(const char *filename, char *buffer, int buflen) buffer[read_len] = '\0'; close(fd); return read_len; +#else + return 0; +#endif } char *update_file(struct sensor_slurp *sf) { @@ -172,6 +184,7 @@ unsigned long total_jiffies_func ( void ) { void cpu_and_core_usage_func (double usage[]) { +#ifndef _MSC_VER char *p; int n, numcores, i; numcores = num_cpustates_func(); @@ -215,7 +228,7 @@ void cpu_and_core_usage_func (double usage[]) p = skip_whitespace(p); } - +#endif } double cpu_user_func ( void ) @@ -339,7 +352,7 @@ double cpu_idle_func ( void ) } /**************NET FUNCTIONS*****************/ -long received_bytes(char *interface) +long received_bytes(char *iface) { static long r_bytes=0; #ifdef HAVE_MAC_SYSCTL @@ -356,7 +369,7 @@ long received_bytes(char *interface) mib[5] = 0; mlen = 6; - ifindex = if_nametoindex(interface); + ifindex = if_nametoindex(iface); sysctl(mib,mlen,NULL,&vlen,NULL,0); buf = malloc(vlen); sysctl(mib,mlen,buf,&vlen,NULL,0); @@ -380,10 +393,10 @@ long received_bytes(char *interface) #else char *temp_if; char *p; - if(interface == NULL) + if(iface == NULL) temp_if = strdup("eth0"); else - temp_if = strdup((const char *)interface); + temp_if = strdup((const char *)iface); sensor_slurp proc_net = { "/proc/net/dev" }; p = update_file(&proc_net); while (p && strncmp(p,temp_if,strlen(temp_if))) @@ -400,7 +413,7 @@ long received_bytes(char *interface) return r_bytes; } -long sent_bytes(char *interface) +long sent_bytes(char *iface) { long s_bytes; #ifdef HAVE_MAC_SYSCTL @@ -418,7 +431,7 @@ long sent_bytes(char *interface) mib[5] = 0; mlen = 6; - ifindex = if_nametoindex(interface); + ifindex = if_nametoindex(iface); sysctl(mib,mlen,NULL,&vlen,NULL,0); buf = malloc(vlen); sysctl(mib,mlen,buf,&vlen,NULL,0); @@ -441,10 +454,10 @@ long sent_bytes(char *interface) char *temp_if; char *p; int i=0; - if(interface == NULL) + if(iface == NULL) temp_if = strdup("eth0"); else - temp_if = strdup((const char *)interface); + temp_if = strdup((const char *)iface); sensor_slurp proc_net = { "/proc/net/dev" }; p = update_file(&proc_net); while (p && strncmp(p,temp_if,strlen(temp_if))) @@ -470,7 +483,7 @@ long sent_bytes(char *interface) * bandwidth is returned. On OS X the two calls have to be atleast 425 microseconds apart. * */ -double net_bw(char *interface, char *stage) +double net_bw(char *iface, char *stage) { static long old_s_bytes, new_s_bytes, old_r_bytes, new_r_bytes, start_time, end_time; long s_bytes, r_bytes; @@ -490,7 +503,7 @@ double net_bw(char *interface, char *stage) mib[5] = 0; mlen = 6; - ifindex = if_nametoindex(interface); + ifindex = if_nametoindex(iface); sysctl(mib,mlen,NULL,&vlen,NULL,0); buf = malloc(vlen); sysctl(mib,mlen,buf,&vlen,NULL,0); @@ -518,14 +531,24 @@ double net_bw(char *interface, char *stage) char *temp_if; char *p; - if(interface == NULL) + if(iface == NULL) temp_if = strdup("eth0"); else - temp_if = strdup((const char*)interface); + temp_if = strdup((const char*)iface); sensor_slurp proc_net = { "/proc/net/dev" }; p = update_file(&proc_net); - gettimeofday(&t,NULL); - +#ifndef HAVE_WINDOWS_H + gettimeofday(&t, NULL); +#else + /* GSE... No gettimeofday on windows. + * Must use _ftime, get millisec time, convert to usec. Bleh. + */ + + struct _timeb nowb; + _ftime(&nowb); + t.tv_sec = (long)nowb.time; + t.tv_usec = nowb.millitm * 1000; +#endif while (p && strncmp(p,temp_if,strlen(temp_if))) { p = skip_token(p); @@ -580,6 +603,7 @@ double dgettimeofday( void ) /**************OS FUNCTIONS**************/ char* os_type() { +#ifndef _MSC_VER static struct utsname output; static int first = 1; if (first) { @@ -587,9 +611,13 @@ char* os_type() { first = 0; } return strdup(output.sysname); +#else + return strdup("Windows"); +#endif } char* os_release() { +#ifndef _MSC_VER static struct utsname output; static int first = 1; if (first) { @@ -597,6 +625,9 @@ char* os_release() { first = 0; } return strdup(output.release); +#else + return strdup("Windows Release"); +#endif } /* Should probably test if gethostname & uname exist on box before using them.... */ @@ -979,22 +1010,22 @@ add_metrics_routines(stone_type stone, cod_parse_context context) * some compilers think it isn't a static initialization to put this * in the structure above, so do it explicitly. */ - externs[0].extern_value = (void *) (long) dgettimeofday; - externs[1].extern_value = (void *) (long) hw_cpus; - externs[2].extern_value = (void *) (long) hw_cpu_min_freq; - externs[3].extern_value = (void *) (long) hw_cpu_max_freq; - externs[4].extern_value = (void *) (long) hw_cpu_curr_freq; - externs[5].extern_value = (void *) (long) os_type; - externs[6].extern_value = (void *) (long) os_release; - externs[7].extern_value = (void *) (long) hostname; - externs[8].extern_value = (void *) (long) stat_uptime; - externs[9].extern_value = (void *) (long) stat_loadavg_one; - externs[10].extern_value = (void *) (long) stat_loadavg_five; - externs[11].extern_value = (void *) (long) stat_loadavg_fifteen; - externs[12].extern_value = (void *) (long) vm_mem_total; - externs[13].extern_value = (void *) (long) vm_mem_free; - externs[14].extern_value = (void *) (long) vm_swap_total; - externs[15].extern_value = (void *) (long) vm_swap_free; + externs[0].extern_value = (void *) (intptr_t) dgettimeofday; + externs[1].extern_value = (void *) (intptr_t) hw_cpus; + externs[2].extern_value = (void *) (intptr_t) hw_cpu_min_freq; + externs[3].extern_value = (void *) (intptr_t) hw_cpu_max_freq; + externs[4].extern_value = (void *) (intptr_t) hw_cpu_curr_freq; + externs[5].extern_value = (void *) (intptr_t) os_type; + externs[6].extern_value = (void *) (intptr_t) os_release; + externs[7].extern_value = (void *) (intptr_t) hostname; + externs[8].extern_value = (void *) (intptr_t) stat_uptime; + externs[9].extern_value = (void *) (intptr_t) stat_loadavg_one; + externs[10].extern_value = (void *) (intptr_t) stat_loadavg_five; + externs[11].extern_value = (void *) (intptr_t) stat_loadavg_fifteen; + externs[12].extern_value = (void *) (intptr_t) vm_mem_total; + externs[13].extern_value = (void *) (intptr_t) vm_mem_free; + externs[14].extern_value = (void *) (intptr_t) vm_swap_total; + externs[15].extern_value = (void *) (intptr_t) vm_swap_free; cod_assoc_externs(context, externs); cod_parse_for_context(extern_string, context); diff --git a/mtests/bulktest.c b/mtests/bulktest.c index 23c151edec..678396c3d1 100644 --- a/mtests/bulktest.c +++ b/mtests/bulktest.c @@ -14,6 +14,8 @@ #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) + #else #include #endif @@ -188,7 +190,11 @@ simple_handler(CManager cm, CMConnection conn, void *vevent, void *client_data, (int) sum, (int) scan_sum); } msg_count++; +#ifdef _MSC_VER + Sleep(10); +#else usleep(10000); +#endif if ((quiet <= -1) || (sum != scan_sum)) { printf("In the handler, event data is :\n"); printf(" integer_field = %d\n", event->integer_field); @@ -453,8 +459,8 @@ do_regression_master_test() } done++; } - } #endif + } if (msg_count != MSG_COUNT) { int i = 10; while ((i >= 0) && (msg_count != MSG_COUNT)) { diff --git a/mtests/cmconn.c b/mtests/cmconn.c index 064f27ed7f..a2a3cafdd3 100644 --- a/mtests/cmconn.c +++ b/mtests/cmconn.c @@ -22,10 +22,19 @@ #include #include #include +#ifdef HAVE_ARPA_INET_H #include +#endif #include "evpath.h" +#ifdef HAVE_SYS_WAIT_H #include - +#endif +#ifdef _MSC_VER +#define drand48() (((double)rand())/((double)RAND_MAX)) +#define lrand48() rand() +#define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) +#endif typedef struct _msg_rec { char *contact_list; int message_id; @@ -133,7 +142,7 @@ main(int argc, char **argv) PARSE_ARGS(); - srand48(getpid()); + srand(getpid()); CM_TRANSPORT = attr_atom_from_string("CM_TRANSPORT"); if (regression && regression_master) { diff --git a/mtests/cmping.c b/mtests/cmping.c index fab7188ebd..067eb11f76 100644 --- a/mtests/cmping.c +++ b/mtests/cmping.c @@ -8,15 +8,18 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include +#include +#include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif typedef struct _complex_rec { @@ -131,7 +134,7 @@ simple_handler(CManager cm, CMConnection conn, void *vevent, void *client_data, (int) sum, (int) scan_sum); } if ((quiet <= 0) || (sum != scan_sum)) { - printf("In the handler, connection is %lx, event data is :\n", (long) conn); + printf("In the handler, connection is %p, event data is :\n", conn); printf(" integer_field = %d\n", event->integer_field); printf(" short_field = %d\n", event->short_field); printf(" long_field = %ld\n", event->long_field); @@ -206,7 +209,7 @@ main(int argc, char **argv) #define HELLO_PORT 12345 #define HELLO_GROUP "225.0.0.37" int addr; - (void) inet_aton(HELLO_GROUP, (struct in_addr *)&addr); + (void) inet_pton(AF_INET, HELLO_GROUP, (struct in_addr *)&addr); contact_list = create_attr_list(); add_attr(contact_list, CM_MCAST_ADDR, Attr_Int4, (attr_value) (long)addr); @@ -308,7 +311,7 @@ do_regression_master_test() #define HELLO_PORT 12345 #define HELLO_GROUP "225.0.0.37" int addr; - (void) inet_aton(HELLO_GROUP, (struct in_addr *)&addr); + (void) inet_pton(AF_INET, HELLO_GROUP, (struct in_addr *)&addr); contact_list = create_attr_list(); add_attr(contact_list, CM_MCAST_ADDR, Attr_Int4, (attr_value) (long)addr); diff --git a/mtests/cmtest.c b/mtests/cmtest.c index 5a15524480..0396443fee 100644 --- a/mtests/cmtest.c +++ b/mtests/cmtest.c @@ -8,15 +8,18 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include +#include +#include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0, 0, (DWORD)x),y) #else #include +#include #endif typedef struct _complex_rec { @@ -127,7 +130,7 @@ simple_handler(CManager cm, CMConnection conn, void *vevent, void *client_data, (int) sum, (int) scan_sum); } if ((quiet <= 0) || (sum != scan_sum)) { - printf("In the handler, connection is %lx, event data is :\n", (long)conn); + printf("In the handler, connection is %p, event data is :\n", conn); printf(" integer_field = %d\n", event->integer_field); printf(" short_field = %d\n", event->short_field); printf(" long_field = %ld\n", event->long_field); @@ -207,7 +210,7 @@ main(int argc, char **argv) #define HELLO_PORT 12345 #define HELLO_GROUP "225.0.0.37" int addr; - (void) inet_aton(HELLO_GROUP, (struct in_addr *)&addr); + (void) inet_pton(AF_INET, HELLO_GROUP, (struct in_addr *)&addr); contact_list = create_attr_list(); add_attr(contact_list, CM_MCAST_ADDR, Attr_Int4, (attr_value) (long)addr); @@ -321,7 +324,7 @@ do_regression_master_test() #define HELLO_PORT 12345 #define HELLO_GROUP "225.0.0.37" int addr; - (void) inet_aton(HELLO_GROUP, (struct in_addr *)&addr); + (void) inet_pton(AF_INET, HELLO_GROUP, (struct in_addr *)&addr); contact_list = create_attr_list(); add_attr(contact_list, CM_MCAST_ADDR, Attr_Int4, (attr_value) (long)addr); diff --git a/mtests/support.c b/mtests/support.c index 5f52740c1e..01bb680382 100644 --- a/mtests/support.c +++ b/mtests/support.c @@ -2,6 +2,10 @@ static char *ssh_args[6]={NULL, NULL, NULL, NULL, NULL, NULL}; static char remote_directory[1024] = ""; static char *argv0; static int no_fork = 0; +#ifdef _MSC_VER +#define pid_t intptr_t +#include +#endif static void usage() @@ -34,10 +38,10 @@ usage() printf("Missing --ssh destination\n");\ usage();\ }\ - first_colon = index(argv[2], ':');\ + first_colon = strchr(argv[2], ':');\ if (first_colon) {\ *first_colon = 0;\ - second_colon = index(first_colon+1, ':');\ + second_colon = strchr(first_colon+1, ':');\ } else {\ second_colon = NULL;\ }\ @@ -92,7 +96,7 @@ run_subprocess(char **args) { char **run_args = args; #ifdef HAVE_WINDOWS_H - int child; + intptr_t child; child = _spawnv(_P_NOWAIT, "./evtest.exe", args); if (child == -1) { printf("failed for evtest\n"); @@ -113,7 +117,7 @@ run_subprocess(char **args) i++; } if (remote_directory[0] != 0) { - if (rindex(argv0, '/')) argv0 = rindex(argv0, '/') + 1; + if (strrchr(argv0, '/')) argv0 = strrchr(argv0, '/') + 1; run_args[i] = malloc(strlen(remote_directory) + strlen(argv0) + 4); strcpy(run_args[i], remote_directory); diff --git a/mtests/take_test.c b/mtests/take_test.c index eb4fdf8cd6..ed7183f5d2 100644 --- a/mtests/take_test.c +++ b/mtests/take_test.c @@ -14,6 +14,8 @@ #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) + #else #include #endif @@ -96,7 +98,7 @@ static FMStructDescRec simple_format_list[] = }; static size_t size = 100000; -static size_t vecs = 1; +static long vecs = 1; static void @@ -140,7 +142,7 @@ generate_record(simple_rec_ptr event) printf("Vecs = %ld\n", vecs); for (i=0; i < vecs; i++) { event->vecs[i].iov_len = size/vecs; - printf("Vec_len = %ld\n", size/vecs); + printf("Vec_len = %zd\n", size/vecs); event->vecs[i].iov_base = malloc(event->vecs[i].iov_len); memset(event->vecs[i].iov_base, 0, event->vecs[i].iov_len); } @@ -236,11 +238,11 @@ static char *transport = NULL; argv++;\ argc--;\ } else if (strcmp(&argv[1][1], "vecs") == 0) {\ - if (sscanf(argv[2], "%zu", &vecs) != 1) {\ + if (sscanf(argv[2], "%lu", &vecs) != 1) {\ printf("Unparseable argument to -vecs, %s\n", argv[2]);\ }\ argv++;\ - argc--; + argc--;\ #include "support.c" @@ -388,7 +390,7 @@ do_regression_master_test() sprintf(&size_str[0], "%zu", size); args[3] = size_str; args[4] = "-vecs"; - sprintf(&vec_str[0], "%zu", vecs); + sprintf(&vec_str[0], "%lu", vecs); args[5] = vec_str; args[6] = string_list; @@ -447,8 +449,8 @@ do_regression_master_test() } done++; } - } #endif + } if (msg_count != MSG_COUNT) { int i = 10; while ((i >= 0) && (msg_count != MSG_COUNT)) { diff --git a/mtests/trans_test.c b/mtests/trans_test.c index fff5a7a9a6..a51fe995f5 100644 --- a/mtests/trans_test.c +++ b/mtests/trans_test.c @@ -17,6 +17,16 @@ #else #define MPI_Finalize() #endif +#ifdef _MSC_VER +#define pid_t intptr_t +#include +#include +#include +#include +#include +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) +#define getcwd(x,y) _getcwd(x,y) +#endif static atom_t CM_TRANS_TEST_SIZE = 10240; static atom_t CM_TRANS_TEST_VECS = 4; @@ -40,7 +50,7 @@ static int received_count = 0; static int *received_counts = NULL; static int taken_corrupt = 0; static int expected_count = -1; -static long write_size = -1; +static size_t write_size = (size_t)( - 1); static int verbose = 0; static int take = 0; static int size_error = 0; @@ -52,13 +62,13 @@ static int me = 0; static int install_schedule = 0; typedef struct _buf_list { int checksum; - long length; + size_t length; void *buffer; } *buf_list; chr_time bandwidth_start_time; attr_list -trans_test_upcall(CManager cm, void *buffer, long length, int type, attr_list list) +trans_test_upcall(CManager cm, void *buffer, size_t length, int type, attr_list list) { static buf_list buffer_list = NULL; static int buffer_count = 0; @@ -81,17 +91,17 @@ trans_test_upcall(CManager cm, void *buffer, long length, int type, attr_list li } if (list) { get_int_attr(list, CM_TRANS_TEST_REPEAT, &expected_count); - get_long_attr(list, CM_TRANS_TEST_SIZE, &write_size); + get_long_attr(list, CM_TRANS_TEST_SIZE, (ssize_t*) &write_size); get_int_attr(list, CM_TRANS_TEST_VERBOSE, &verbose); get_int_attr(list, CM_TRANS_TEST_TAKE_RECEIVE_BUFFER, &take); } return NULL; case 1: /* body message */ - if (verbose) printf("Body message %d received from node %d, length %ld\n", *(int*)buffer, + if (verbose) printf("Body message %d received from node %d, length %zd\n", *(int*)buffer, ((int*)buffer)[1], length); if (length != (write_size - 12 /* test protocol swallows a little as header */)) { - printf("Error in body delivery size, expected %ld, got %ld\n", write_size - 12, length); + printf("Error in body delivery size, expected %zd, got %zd\n", write_size - 12, length); size_error++; } if (use_mpi) { @@ -161,7 +171,7 @@ trans_test_upcall(CManager cm, void *buffer, long length, int type, attr_list li set_double_attr(list, CM_TRANS_TEST_DURATION, chr_time_to_secs(&bandwidth_start_time)); if (get_double_attr(list, CM_TRANS_TEST_DURATION, &secs)) { - long size = received_count * write_size * (np-1); + size_t size = received_count * write_size * (np-1); double megabits = (double)size*8 / ((double)1000*1000); double megabits_sec = megabits / secs; set_double_attr(ret, CM_TRANS_MEGABITS_SEC, megabits_sec); @@ -196,7 +206,7 @@ fail_and_die(int signal) (void)signal; fprintf(stderr, "Trans_test failed to complete in reasonable time, increase from -timeout %d\n", timeout); fprintf(stderr, "Stats are : vec_count = %d, size = %ld, msg_count = %d, reuse_write = %d, received_count = %d\n", vec_count, size, msg_count, reuse_write, received_count); - fprintf(stderr, " reuse_write = %d, received_count = %d, taken_corrupt = %d, expected_count = %d, write_size = %ld, size_error = %d\n", reuse_write, received_count, taken_corrupt, expected_count, write_size, size_error); + fprintf(stderr, " reuse_write = %d, received_count = %d, taken_corrupt = %d, expected_count = %d, write_size = %zd, size_error = %d\n", reuse_write, received_count, taken_corrupt, expected_count, write_size, size_error); if (subproc_proc != 0) { kill(subproc_proc, 9); } @@ -209,7 +219,7 @@ pid_t run_subprocess(char **args) { #ifdef HAVE_WINDOWS_H - int child; + intptr_t child; child = _spawnv(_P_NOWAIT, args[0], args); if (child == -1) { printf("failed for cmtest\n"); @@ -257,9 +267,7 @@ usage() } int -main(argc, argv) - int argc; - char **argv; +main(int argc, char **argv) { CManager cm; CMConnection conn = NULL; @@ -418,7 +426,9 @@ main(argc, argv) #else me = 0; #endif - +#ifdef HAVE_WINDOWS_H + SetTimer(NULL, 5, timeout, (TIMERPROC)fail_and_die); +#else struct sigaction sigact; sigact.sa_flags = 0; sigact.sa_handler = fail_and_die; @@ -426,6 +436,7 @@ main(argc, argv) sigaddset(&sigact.sa_mask, SIGALRM); sigaction(SIGALRM, &sigact, NULL); alarm(timeout); +#endif cm = CManager_create(); CMinstall_perf_upcall(cm, trans_test_upcall); @@ -487,7 +498,17 @@ main(argc, argv) openings[1].duration.tv_sec = 4; openings[1].duration.tv_usec = 0; openings[2].offset.tv_sec = 0; openings[2].offset.tv_usec = 0; openings[2].duration.tv_sec = 0; openings[2].duration.tv_usec = 0; - gettimeofday(&now, NULL); +#ifdef HAVE_GETTIMEOFDAY + gettimeofday((struct timeval*)&now, NULL); +#else + /* GSE... No gettimeofday on windows. + * Must use _ftime, get millisec time, convert to usec. Bleh. + */ + struct _timeb nowb; + _ftime(&nowb); + ((struct timeval*)&now)->tv_sec = (long)nowb.time; + ((struct timeval*)&now)->tv_usec = nowb.millitm * 1000; +#endif now.tv_sec--; CMinstall_pull_schedule(cm, &now, &period, &openings[0]); } diff --git a/qual_hostname.c b/qual_hostname.c index 0ae06dc134..c917626e8c 100644 --- a/qual_hostname.c +++ b/qual_hostname.c @@ -6,11 +6,11 @@ #ifdef HAVE_SYS_SOCKIO_H #include #endif -#include #ifdef HAVE_WINDOWS_H -#include +#include #define __ANSI_CPP__ #else +#include #include #include #include @@ -364,7 +364,7 @@ get_qual_hostname(void *cm, char *buf, int len, CMtrans_services svc, attr_list } } if (network_string != NULL) { - int name_len = strlen(buf) + 2 + strlen(network_string); + size_t name_len = strlen(buf) + 2 + strlen(network_string); char *new_name_str = svc->malloc_func(name_len); char *first_dot = strchr(buf, '.'); diff --git a/response.c b/response.c index b44f5756c9..fae5c44294 100644 --- a/response.c +++ b/response.c @@ -4,7 +4,6 @@ #include #include #include -#include #include #include #include @@ -116,16 +115,16 @@ add_FMfieldlist_to_string(char *str, FMStructDescRec *f) { int index, field_count = 0; FMFieldList list = f->field_list; - int len = strlen(str); + int len = (int) strlen(str); char *tmp_str; - len += strlen(f->format_name) + 5 + 35 + 20; + len += (int)strlen(f->format_name) + 5 + 35 + 20; str = realloc(str, len); while(list && (list[field_count].field_name != NULL)) field_count++; tmp_str = str + strlen(str); sprintf(tmp_str, "FMFormat \"%s\" StructSize %d FieldCount %d\n", f->format_name, f->struct_size, field_count); for (index = 0; index < field_count; index++) { - len += strlen(list[index].field_name) +strlen(list[index].field_type) + 50; + len += (int)strlen(list[index].field_name) + (int) strlen(list[index].field_type) + 50; str = realloc(str, len); tmp_str = str + strlen(str); sprintf(tmp_str, " FMField \"%s\" \"%s\" %d %d\n", @@ -423,9 +422,9 @@ create_terminal_action_spec(FMStructDescList format_list) char * INT_create_bridge_action_spec(int stone_id, char *contact) { - int size = strlen(contact); + int size = (int) strlen(contact); char *output; - size += strlen("Bridge Action") + 20; + size += (int) strlen("Bridge Action") + 20; output = malloc(size); sprintf(output, "Bridge Action %d %s", stone_id, contact); return output; @@ -594,7 +593,7 @@ filter_wrapper(CManager cm, struct _event_item *event, void *client_data, ev_state.out_stones = out_stones; if (ec != NULL) { #ifdef HAVE_COD_H - cod_assoc_client_data(ec, 0x34567890, (long)&ev_state); + cod_assoc_client_data(ec, 0x34567890, (intptr_t)&ev_state); ret = ((int(*)(cod_exec_context, void *, attr_list))instance->u.filter.code->func)(ec, event->decoded_event, attrs); #endif @@ -629,7 +628,7 @@ router_wrapper(CManager cm, struct _event_item *event, void *client_data, ev_state.cur_event = event; ev_state.out_count = out_count; ev_state.out_stones = out_stones; - cod_assoc_client_data(ec, 0x34567890, (long)&ev_state); + cod_assoc_client_data(ec, 0x34567890, (intptr_t)&ev_state); ret = (func)(ec, event->decoded_event, attrs); #endif } @@ -687,7 +686,7 @@ transform_wrapper(CManager cm, struct _event_item *event, void *client_data, if (ec != NULL) { #ifdef HAVE_COD_H func = (int(*)(cod_exec_context, void *, void*, attr_list, attr_list))instance->u.transform.code->func; - cod_assoc_client_data(ec, 0x34567890, (long)&ev_state); + cod_assoc_client_data(ec, 0x34567890, (intptr_t)&ev_state); ret = func(ec, event->decoded_event, out_event, attrs, output_attrs); #endif } else { @@ -1087,7 +1086,7 @@ queued_wrapper(CManager cm, struct _queue *queue, queue_item *item, ev_state.item = item; ev_state.instance = instance; ev_state.did_output = 0; - cod_assoc_client_data(ec, 0x34567890, (long)&ev_state); + cod_assoc_client_data(ec, 0x34567890, (intptr_t)&ev_state); func(ec); @@ -1106,8 +1105,7 @@ generate_multityped_code(CManager cm, struct response_spec *mrd, stone_type ston extern void -free_struct_list(list) -FMStructDescList list; +free_struct_list(FMStructDescList list) { int format_count = 0; int format; @@ -1702,6 +1700,21 @@ internal_cod_submit(cod_exec_context ec, int port, void *data, void *type_info) internal_cod_submit_general(ec, port, data, type_info, NULL, NULL); } +#ifdef _MSC_VER +static long lrand48() +{ + return rand(); +} + +static double drand48() { + return (double)(rand()) / (double)(RAND_MAX); +} +static void +sleep(int t) +{ + Sleep(t * 1000); +} +#endif static void add_standard_routines(stone_type stone, cod_parse_context context) { @@ -1744,19 +1757,20 @@ add_standard_routines(stone_type stone, cod_parse_context context) * some compilers think it isn't a static initialization to put this * in the structure above, so do it explicitly. */ - externs[0].extern_value = (void *) (long) printf; - externs[1].extern_value = (void *) (long) malloc; - externs[2].extern_value = (void *) (long) free; - externs[3].extern_value = (void *) (long) lrand48; - externs[4].extern_value = (void *) (long) drand48; - externs[5].extern_value = (void *) (long) &stone->stone_attrs; - externs[6].extern_value = (void *) (long) &internal_cod_submit; - externs[7].extern_value = (void *) (long) &internal_cod_submit_attr; - externs[8].extern_value = (void *) (long) &internal_cod_submit_general; - externs[9].extern_value = (void *) (long) &sleep; - externs[10].extern_value = (void *) (long) &cod_max_output; - externs[11].extern_value = (void *) (long) &cod_target_stone_on_port; - externs[12].extern_value = (void *) (long) &cod_ev_get_stone_attrs; + + externs[0].extern_value = (void *) (intptr_t) printf; + externs[1].extern_value = (void *) (intptr_t) malloc; + externs[2].extern_value = (void *) (intptr_t) free; + externs[3].extern_value = (void *) (intptr_t) lrand48; + externs[4].extern_value = (void *) (intptr_t) drand48; + externs[5].extern_value = (void *) (intptr_t) &stone->stone_attrs; + externs[6].extern_value = (void *) (intptr_t) &internal_cod_submit; + externs[7].extern_value = (void *) (intptr_t) &internal_cod_submit_attr; + externs[8].extern_value = (void *) (intptr_t) &internal_cod_submit_general; + externs[9].extern_value = (void *) (intptr_t) &sleep; + externs[10].extern_value = (void *) (intptr_t) &cod_max_output; + externs[11].extern_value = (void *) (intptr_t) &cod_target_stone_on_port; + externs[12].extern_value = (void *) (intptr_t) &cod_ev_get_stone_attrs; cod_assoc_externs(context, externs); cod_parse_for_context(extern_string, context); @@ -1840,7 +1854,7 @@ add_typed_queued_routines(cod_parse_context context, int index, const char *fmt_ * the index here is the index of the queue itself, * while the index in the calls above is the index of the referenced queue item */ - cod_set_closure(cur->extern_name, (void*)(long)index, context); + cod_set_closure(cur->extern_name, (void*)(intptr_t)index, context); free(cur->extern_name); } free(externs); @@ -1860,7 +1874,7 @@ add_typed_queued_routines(cod_parse_context context, int index, const char *fmt_ * the index here is the index of the queue itself, * while the index in the calls above is the index of the referenced queue item */ - cod_set_closure(cur->extern_name, (void*)(long)index, context); + cod_set_closure(cur->extern_name, (void*)(intptr_t)index, context); free(cur->extern_name); } } @@ -1927,11 +1941,11 @@ add_queued_routines(cod_parse_context context, FMFormat *formats) cod_assoc_externs(context, externs); cod_parse_for_context(extern_string, context); - cod_set_closure("EVdiscard_full", (void*)(long)-1, context); - cod_set_closure("EVdiscard_and_submit_full", (void*)(long)-1, context); - cod_set_closure("EVget_attrs_full", (void*)(long)-1, context); - cod_set_closure("EVdata_full", (void*)(long)-1, context); - cod_set_closure("EVcount_full", (void*)(long)-1, context); + cod_set_closure("EVdiscard_full", (void*)(intptr_t)-1, context); + cod_set_closure("EVdiscard_and_submit_full", (void*)(intptr_t)-1, context); + cod_set_closure("EVget_attrs_full", (void*)(intptr_t)-1, context); + cod_set_closure("EVdata_full", (void*)(intptr_t)-1, context); + cod_set_closure("EVcount_full", (void*)(intptr_t)-1, context); for (cur = formats, i = 0; *cur; ++cur, ++i) { add_typed_queued_routines(context, i, name_of_FMformat(*cur)); @@ -1960,7 +1974,7 @@ extern sm_ref cod_build_param_node(const char *id, sm_ref typ, int param_num); extern void cod_add_decl_to_parse_context(const char *name, sm_ref item, cod_parse_context context); -extern void +extern FFS_DECLSPEC void cod_add_param(const char *id, const char *typ, int param_num, cod_parse_context context); diff --git a/response.h b/response.h index ae85c1eeaa..9fdd396f53 100644 --- a/response.h +++ b/response.h @@ -1,4 +1,4 @@ -extern int response_data_free(); +extern int response_data_free(CManager cm, void *resp_void); extern void * install_response_handler(CManager cm, int stone_id, char *response_spec, diff --git a/rtests/evtest.c b/rtests/evtest.c index e0f137798b..cf1a2ac732 100644 --- a/rtests/evtest.c +++ b/rtests/evtest.c @@ -8,16 +8,20 @@ #include #include #include -#include #include "evpath.h" #include "revpath.h" #ifdef HAVE_WINDOWS_H #include +#include +#include + #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif typedef struct _complex_rec { @@ -293,7 +297,7 @@ do_regression_master_test() #define HELLO_PORT 12345 #define HELLO_GROUP "225.0.0.37" int addr; - (void) inet_aton(HELLO_GROUP, (struct in_addr *)&addr); + (void) inet_pton(AF_INET, HELLO_GROUP, (struct in_addr *)&addr); contact_list = create_attr_list(); add_attr(contact_list, CM_MCAST_ADDR, Attr_Int4, (attr_value) (long)addr); diff --git a/rtests/extract_test.c b/rtests/extract_test.c index 980a8b8fc5..ed2677329b 100644 --- a/rtests/extract_test.c +++ b/rtests/extract_test.c @@ -8,15 +8,18 @@ #include #include #include -#include #include "evpath.h" #include "revpath.h" #ifdef HAVE_WINDOWS_H #include +#include < ws2tcpip.h> +#include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0, 0, (DWORD)x),y) #else +#include #include #endif @@ -362,7 +365,7 @@ do_regression_master_test() #define HELLO_PORT 12345 #define HELLO_GROUP "225.0.0.37" int addr; - (void) inet_aton(HELLO_GROUP, (struct in_addr *)&addr); + (void) inet_pton(AF_INET, HELLO_GROUP, (struct in_addr *)&addr); contact_list = create_attr_list(); add_attr(contact_list, CM_MCAST_ADDR, Attr_Int4, (attr_value) (long)addr); diff --git a/rtests/remote_terminal_test.c b/rtests/remote_terminal_test.c index e3f87521ed..999bb626b4 100644 --- a/rtests/remote_terminal_test.c +++ b/rtests/remote_terminal_test.c @@ -8,15 +8,18 @@ #include #include #include -#include #include "evpath.h" #include "revpath.h" #ifdef HAVE_WINDOWS_H #include +#include +#include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else +#include #include #endif @@ -287,7 +290,7 @@ do_regression_master_test() #define HELLO_PORT 12345 #define HELLO_GROUP "225.0.0.37" int addr; - (void) inet_aton(HELLO_GROUP, (struct in_addr *)&addr); + (void) inet_pton(AF_INET, HELLO_GROUP, (struct in_addr *)&addr); contact_list = create_attr_list(); add_attr(contact_list, CM_MCAST_ADDR, Attr_Int4, (attr_value) (long)addr); diff --git a/tests/auto_test.c b/tests/auto_test.c index 95e00db44c..492b9dcd02 100644 --- a/tests/auto_test.c +++ b/tests/auto_test.c @@ -8,15 +8,16 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif typedef struct _complex_rec { diff --git a/tests/bulktest.c b/tests/bulktest.c index ccd5aba339..af28afa6c4 100644 --- a/tests/bulktest.c +++ b/tests/bulktest.c @@ -10,15 +10,16 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif #define MSG_COUNT 30 @@ -292,10 +293,10 @@ main(int argc, char **argv) printf("Missing --ssh destination\n"); usage(); } - first_colon = index(argv[2], ':'); + first_colon = strchr(argv[2], ':'); if (first_colon) { *first_colon = 0; - second_colon = index(first_colon+1, ':'); + second_colon = strchr(first_colon+1, ':'); } else { second_colon = NULL; } @@ -500,19 +501,19 @@ static int do_regression_master_test() { CManager cm; - char *args[20] = {"bulktest", "-c", NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL}; + char* args[20] = { "bulktest", "-c", NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL }; int last_arg = 2; int exit_state; int forked = 0; attr_list contact_list, listen_list = NULL; - char *string_list, *postfix; + char* string_list, * postfix; char size_str[40]; char vec_str[40]; char msg_str[40]; EVstone handle; int done = 0; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 1000, (TIMERPROC)fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; @@ -522,49 +523,52 @@ do_regression_master_test() sigaction(SIGALRM, &sigact, NULL); alarm(300); #endif + cm = CManager_create(); forked = CMfork_comm_thread(cm); if (transport || ((transport = getenv("CMTransport")) != NULL)) { listen_list = create_attr_list(); add_attr(listen_list, CM_TRANSPORT, Attr_String, - (attr_value) strdup(transport)); + (attr_value)strdup(transport)); } if ((postfix = getenv("CMNetworkPostfix")) != NULL) { if (listen_list == NULL) listen_list = create_attr_list(); add_attr(listen_list, CM_NETWORK_POSTFIX, Attr_String, - (attr_value) strdup(postfix)); + (attr_value)strdup(postfix)); } CMlisten_specific(cm, listen_list); if (listen_list) free_attr_list(listen_list); contact_list = CMget_contact_list(cm); if (transport != NULL) { - char *actual_transport = NULL; - get_string_attr(contact_list, CM_TRANSPORT, &actual_transport); - if (!actual_transport || (strncmp(actual_transport, transport, strlen(actual_transport)) != 0)) { - printf("Failed to load transport \"%s\"\n", transport); - exit(1); - } + char* actual_transport = NULL; + get_string_attr(contact_list, CM_TRANSPORT, &actual_transport); + if (!actual_transport || (strncmp(actual_transport, transport, strlen(actual_transport)) != 0)) { + printf("Failed to load transport \"%s\"\n", transport); + exit(1); + } } + if (contact_list) { string_list = attr_list_to_string(contact_list); free_attr_list(contact_list); - } else { + } + else { /* must be multicast, hardcode a contact list */ #define HELLO_PORT 12345 #define HELLO_GROUP "225.0.0.37" int addr; - (void) inet_aton(HELLO_GROUP, (struct in_addr *)&addr); + (void)inet_aton(HELLO_GROUP, (struct in_addr*)&addr); contact_list = create_attr_list(); add_attr(contact_list, CM_MCAST_ADDR, Attr_Int4, - (attr_value) (long)addr); + (attr_value)(long)addr); add_attr(contact_list, CM_MCAST_PORT, Attr_Int4, - (attr_value) HELLO_PORT); + (attr_value)HELLO_PORT); add_attr(contact_list, CM_TRANSPORT, Attr_String, - (attr_value) "multicast"); - (void) CMinitiate_conn(cm, contact_list); + (attr_value)"multicast"); + (void)CMinitiate_conn(cm, contact_list); string_list = attr_list_to_string(contact_list); free_attr_list(contact_list); - } + } args[last_arg++] = "-size"; sprintf(&size_str[0], "%d", size); args[last_arg++] = size_str; @@ -580,7 +584,8 @@ do_regression_master_test() if (quiet <= 0) { if (forked) { printf("Forked a communication thread\n"); - } else { + } + else { printf("Doing non-threaded communication handling\n"); } } @@ -600,11 +605,11 @@ do_regression_master_test() perror("cwait"); } if (exit_state == 0) { - if (quiet <= 0) + if (quiet <= 0) printf("Subproc exitted\n"); } else { printf("Single remote subproc exit with status %d\n", - exit_state); + exit_state); } #else int result; @@ -622,20 +627,22 @@ do_regression_master_test() if (result == subproc_proc) { if (WIFEXITED(exit_state)) { if (WEXITSTATUS(exit_state) == 0) { - if (quiet <= 0) + if (quiet <= 0) printf("Subproc exited\n"); - } else { + } + else { printf("Single remote subproc exit with status %d\n", - WEXITSTATUS(exit_state)); + WEXITSTATUS(exit_state)); } - } else if (WIFSIGNALED(exit_state)) { + } + else if (WIFSIGNALED(exit_state)) { printf("Single remote subproc died with signal %d\n", - WTERMSIG(exit_state)); + WTERMSIG(exit_state)); } done++; } - } #endif + } if (msg_count != msg_limit) { int i = 10; while ((i >= 0) && (msg_count != msg_limit)) { @@ -646,8 +653,8 @@ do_regression_master_test() free(string_list); CManager_close(cm); if (message_count != expected_count) { - printf ("failure, received %d messages instead of %d\n", - message_count, expected_count); + printf("failure, received %d messages instead of %d\n", + message_count, expected_count); } return !(message_count == expected_count); } diff --git a/tests/evtest.c b/tests/evtest.c index 492ebe87e5..7359753152 100644 --- a/tests/evtest.c +++ b/tests/evtest.c @@ -8,15 +8,18 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include +#include +#include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif typedef struct _complex_rec { @@ -208,7 +211,7 @@ main(int argc, char **argv) #define HELLO_PORT 12345 #define HELLO_GROUP "225.0.0.37" int addr; - (void) inet_aton(HELLO_GROUP, (struct in_addr *)&addr); + (void) inet_pton(AF_INET, HELLO_GROUP, (struct in_addr *)&addr); contact_list = create_attr_list(); add_attr(contact_list, CM_MCAST_ADDR, Attr_Int4, (attr_value) (long)addr); diff --git a/tests/executing_stone_test.c b/tests/executing_stone_test.c index aef65d7fe3..fbca66a21a 100644 --- a/tests/executing_stone_test.c +++ b/tests/executing_stone_test.c @@ -15,9 +15,19 @@ #include #include #include +#ifdef HAVE_ARPA_INET_H #include +#endif #include "evpath.h" +#ifdef HAVE_SYS_WAIT_H #include +#endif +#ifdef HAVE_WINDOWS_H +#include +#define drand48() (((double)rand())/((double)RAND_MAX)) +#define lrand48() rand() +#define srand48(x) +#endif typedef struct _complex_rec { diff --git a/tests/extract_test.c b/tests/extract_test.c index 4724aa05ef..5e036c6657 100644 --- a/tests/extract_test.c +++ b/tests/extract_test.c @@ -8,15 +8,16 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif typedef struct _complex_rec { diff --git a/tests/filter2_test.c b/tests/filter2_test.c index b12e283b16..6fb5f6d73a 100644 --- a/tests/filter2_test.c +++ b/tests/filter2_test.c @@ -20,15 +20,16 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif typedef struct _complex_rec { diff --git a/tests/filter_test.c b/tests/filter_test.c index c3155bebe5..bc680fc189 100644 --- a/tests/filter_test.c +++ b/tests/filter_test.c @@ -11,15 +11,16 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif typedef struct _complex_rec { @@ -179,8 +180,8 @@ main(int argc, char **argv) PARSE_ARGS(); - if (rindex(argv0, '/')) { - char *last_slash = rindex(argv0, '/'); + if (strrchr(argv0, '/')) { + char *last_slash = strrchr(argv0, '/'); *last_slash = 0; EVadd_dll_search_dir(argv0); *last_slash = '/'; diff --git a/tests/http_test.c b/tests/http_test.c index ca82f2e943..f1ced50ea0 100644 --- a/tests/http_test.c +++ b/tests/http_test.c @@ -8,15 +8,16 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif typedef struct _complex_rec { diff --git a/tests/multi_thread.c b/tests/multi_thread.c index 4d59e1eef0..db740c3f0e 100644 --- a/tests/multi_thread.c +++ b/tests/multi_thread.c @@ -8,7 +8,9 @@ #include #include #include +#ifdef HAVE_ARPA_INET_H #include +#endif #include "evpath.h" #ifdef HAVE_WINDOWS_H #include diff --git a/tests/multiq_test.c b/tests/multiq_test.c index 54670da561..163db5290d 100644 --- a/tests/multiq_test.c +++ b/tests/multiq_test.c @@ -12,15 +12,16 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif typedef struct _rec_a { diff --git a/tests/no_type_router_test.c b/tests/no_type_router_test.c index 9fa4b0320c..3a49811360 100644 --- a/tests/no_type_router_test.c +++ b/tests/no_type_router_test.c @@ -11,15 +11,16 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif typedef struct _complex_rec { diff --git a/tests/rawtest.c b/tests/rawtest.c index bf8203db11..0a40e4f819 100644 --- a/tests/rawtest.c +++ b/tests/rawtest.c @@ -8,13 +8,16 @@ #include #include #include +#ifdef HAVE_ARPA_INET_H #include +#endif #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include #endif @@ -145,7 +148,7 @@ simple_handler(CManager cm, void *vevent, void *client_data, attr_list attrs) static FFSContext c = NULL; static int -raw_handler(CManager cm, void *vevent, int len, void *client_data, +raw_handler(CManager cm, void *vevent, size_t len, void *client_data, attr_list attrs) { FFSTypeHandle f; @@ -290,7 +293,7 @@ do_regression_master_test() srand48(1); handle = EValloc_stone(cm); - EVassoc_raw_terminal_action(cm, handle, raw_handler, &message_count); + EVassoc_raw_terminal_action(cm, handle, (EVRawHandlerFunc) raw_handler, &message_count); /* do a local test */ generate_record(&data); diff --git a/tests/rawtest2.c b/tests/rawtest2.c index ce205ee7cb..242ee5065c 100644 --- a/tests/rawtest2.c +++ b/tests/rawtest2.c @@ -8,13 +8,16 @@ #include #include #include +#ifdef HAVE_ARPA_INET_H #include +#endif #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include #endif @@ -153,7 +156,7 @@ simple_handler(CManager cm, void *vevent, void *client_data, attr_list attrs) static FFSContext c = NULL; static int -raw_handler(CManager cm, void *vevent, int len, void *client_data, +raw_handler(CManager cm, void *vevent, size_t len, void *client_data, attr_list attrs) { FFSTypeHandle f; diff --git a/tests/router_test.c b/tests/router_test.c index fa4830b4fb..d99d503971 100644 --- a/tests/router_test.c +++ b/tests/router_test.c @@ -11,15 +11,16 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif typedef struct _complex_rec { diff --git a/tests/router_test2.c b/tests/router_test2.c index ffcf6941c1..43a8919e2a 100644 --- a/tests/router_test2.c +++ b/tests/router_test2.c @@ -8,15 +8,16 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif typedef struct _complex_rec { diff --git a/tests/split_test.c b/tests/split_test.c index 58fca1cb77..6aa2d22abd 100644 --- a/tests/split_test.c +++ b/tests/split_test.c @@ -8,15 +8,16 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif typedef struct _complex_rec { @@ -80,8 +81,7 @@ static FMStructDescRec simple_format_list[] = static void -generate_record(event) -simple_rec_ptr event; +generate_record(simple_rec_ptr event) { long sum = 0; event->integer_field = (int) lrand48() % 100; @@ -108,11 +108,7 @@ int quiet = 1; static int -simple_handler(cm, vevent, client_data, attrs) -CManager cm; -void *vevent; -void *client_data; -attr_list attrs; +simple_handler(CManager cm, void *vevent, void *client_data, attr_list attrs) { simple_rec_ptr event = vevent; long sum = 0, scan_sum = 0; @@ -159,9 +155,7 @@ char *control = NULL; #include "support.c" int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { CManager cm; int regression_master = 1; @@ -218,7 +212,7 @@ char **argv; free_attr_list(contact_list); } stone = EValloc_stone(cm); - EVassoc_terminal_action(cm, stone, simple_format_list, simple_handler, NULL); + EVassoc_terminal_action(cm, stone, simple_format_list, (EVSimpleHandlerFunc)simple_handler, NULL); printf("Contact list \"%d:%s\"\n", stone, string_list); CMsleep(cm, 120); } else { @@ -276,8 +270,7 @@ char **argv; static pid_t subproc_proc = 0; static void -fail_and_die(signal) -int signal; +fail_and_die(int signal) { fprintf(stderr, "split_test failed to complete in reasonable time\n"); if (subproc_proc != 0) { @@ -353,7 +346,7 @@ do_regression_master_test() srand48(1); handle = EValloc_stone(cm); - EVassoc_terminal_action(cm, handle, simple_format_list, simple_handler, &message_count); + EVassoc_terminal_action(cm, handle, simple_format_list, (EVSimpleHandlerFunc)simple_handler, &message_count); args[2] = string_list; args[2] = malloc(10 + strlen(string_list)); diff --git a/tests/submit_test.c b/tests/submit_test.c index 6f73648abb..7d7d933038 100644 --- a/tests/submit_test.c +++ b/tests/submit_test.c @@ -11,15 +11,16 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif typedef struct _complex_rec { diff --git a/tests/support.c b/tests/support.c index c785302788..5a13be452c 100644 --- a/tests/support.c +++ b/tests/support.c @@ -2,6 +2,10 @@ static char *ssh_args[6]={NULL, NULL, NULL, NULL, NULL, NULL}; static char remote_directory[1024] = ""; static char *argv0; static int no_fork = 0; +#ifdef _MSC_VER +#define pid_t intptr_t +#include +#endif static void usage() @@ -34,10 +38,10 @@ usage() printf("Missing --ssh destination\n");\ usage();\ }\ - first_colon = index(argv[2], ':');\ + first_colon = strchr(argv[2], ':');\ if (first_colon) {\ *first_colon = 0;\ - second_colon = index(first_colon+1, ':');\ + second_colon = strchr(first_colon+1, ':');\ } else {\ second_colon = NULL;\ }\ @@ -86,12 +90,20 @@ usage() argc--;\ } +#ifdef _MSC_VER +static int inet_aton(const char* cp, struct in_addr* addr) +{ + addr->s_addr = inet_addr(cp); + return (addr->s_addr == INADDR_NONE) ? 0 : 1; +} +#endif + pid_t run_subprocess(char **args) { char **run_args = args; #ifdef HAVE_WINDOWS_H - int child; + intptr_t child; child = _spawnv(_P_NOWAIT, "./evtest.exe", args); if (child == -1) { printf("failed for evtest\n"); @@ -112,7 +124,7 @@ run_subprocess(char **args) i++; } if (remote_directory[0] != 0) { - if (rindex(argv0, '/')) argv0 = rindex(argv0, '/') + 1; + if (strrchr(argv0, '/')) argv0 = strrchr(argv0, '/') + 1; run_args[i] = malloc(strlen(remote_directory) + strlen(argv0) + 4); strcpy(run_args[i], remote_directory); diff --git a/tests/take_test.c b/tests/take_test.c index 34f03299c0..c3add025ac 100644 --- a/tests/take_test.c +++ b/tests/take_test.c @@ -481,8 +481,8 @@ do_regression_master_test() } done++; } - } #endif + } if (msg_count != MSG_COUNT) { int i = 10; while ((i >= 0) && (msg_count != MSG_COUNT)) { diff --git a/tests/testdll/foo.c b/tests/testdll/foo.c index cdbe1eb813..b22665fe10 100644 --- a/tests/testdll/foo.c +++ b/tests/testdll/foo.c @@ -4,7 +4,12 @@ #if defined (__INTEL_COMPILER) # pragma warning (disable: 1418) #endif - +#ifdef _MSC_VER +#include +#define srand48(s) srand(s) +#define drand48() (rand()*(1./RAND_MAX)) +#define lrand48() ((long long)rand() << 32 | rand()) +#endif typedef struct _complex_rec { double r; double i; diff --git a/tests/thin_client.c b/tests/thin_client.c index de820630a3..9925f641e8 100644 --- a/tests/thin_client.c +++ b/tests/thin_client.c @@ -2,12 +2,21 @@ #include #include #include +#ifndef HAVE_WINDOWS_H #include #include #include #include -#include #include +#else +#include +#include +#define drand48() (((double)rand())/((double)RAND_MAX)) +#define lrand48() rand() +#define srand48(x) +#define close(x) closesocket(x) +#endif +#include #include "ffs.h" typedef struct _simple_rec { @@ -40,7 +49,10 @@ FMStructDescRec thin_formats[] = { {"thin_message", simple_field_list, sizeof(simple_rec), NULL}, {NULL, NULL, 0, NULL}}; -static int do_connection(char* host, int port); +#ifndef _MSC_VER +#define SOCKET int +#endif +static SOCKET do_connection(char* host, int port); static void generate_record (simple_rec_ptr event); int @@ -53,7 +65,7 @@ main(int argc, char **argv) FMFormat ioformat; FMContext fmc; simple_rec rec; - long conn; + SOCKET conn; char *comment = strdup("Stone xxxxx"); if ((argc != 4) || (sscanf(argv[2], "%d", &remote_port) != 1) @@ -69,7 +81,7 @@ main(int argc, char **argv) printf("Connection to %s:%d failed\n", remote_host, remote_port); exit(1); } - out_connection = open_FFSfd((void*)conn, "w"); + out_connection = open_FFSfd((void*)(intptr_t)conn, "w"); sprintf(comment, "Stone %d", stone); write_comment_FFSfile(out_connection, comment); @@ -83,7 +95,7 @@ main(int argc, char **argv) return 0; } -int +SOCKET do_connection(char * remote_host, int port) { struct hostent *host_addr; @@ -91,7 +103,7 @@ do_connection(char * remote_host, int port) memset((char*)&sin, 0, sizeof(sin)); - int conn = socket(PF_INET, SOCK_STREAM, IPPROTO_TCP); + SOCKET conn = socket(PF_INET, SOCK_STREAM, IPPROTO_TCP); if (conn == -1) return -1; diff --git a/tests/thin_test.c b/tests/thin_test.c index 4e26d090f9..f6a3340d9d 100644 --- a/tests/thin_test.c +++ b/tests/thin_test.c @@ -8,13 +8,16 @@ #include #include #include +#ifdef HAVE_ARPA_INET_H #include +#endif #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include #endif diff --git a/tests/transform_test.c b/tests/transform_test.c index f4b79f9eac..c36a3f014f 100644 --- a/tests/transform_test.c +++ b/tests/transform_test.c @@ -11,15 +11,16 @@ #include #include #include -#include #include "evpath.h" #ifdef HAVE_WINDOWS_H #include #define drand48() (((double)rand())/((double)RAND_MAX)) #define lrand48() rand() #define srand48(x) +#define kill(x,y) TerminateProcess(OpenProcess(0,0,(DWORD)x),y) #else #include +#include #endif typedef struct _complex_rec { @@ -186,7 +187,7 @@ output_handler(CManager cm, void *vevent, void *client_data, attr_list attrs) return 0; } -static int do_regression_master_test(); +static int do_regression_master_test(int do_dll); static int regression = 1; static int repeat_count = 10; static atom_t CM_TRANSPORT; @@ -220,8 +221,8 @@ main(int argc, char **argv) PARSE_ARGS(); - if (rindex(argv0, '/')) { - char *last_slash = rindex(argv0, '/'); + if (strrchr(argv0, '/')) { + char *last_slash = strrchr(argv0, '/'); *last_slash = 0; EVadd_dll_search_dir(argv0); *last_slash = '/'; diff --git a/thin_server.c b/thin_server.c index 965f468266..7384bffaa4 100644 --- a/thin_server.c +++ b/thin_server.c @@ -2,12 +2,22 @@ #include #include #include +#ifdef HAVE_WINSOCK2_H +#include +#include +#define drand48() (((double)rand())/((double)RAND_MAX)) +#define lrand48() rand() +#define srand48(x) +#else #include #include #include #include +#endif #include +#ifdef HAVE_UNISTD_H #include +#endif #include "evpath.h" #include "cm_internal.h" @@ -31,7 +41,7 @@ EVthin_socket_listen(CManager cm, char **hostname_p, int *port_p) unsigned int length; struct sockaddr_in sock_addr; int sock_opt_val = 1; - int conn_sock; + SOCKET conn_sock; int int_port_num = 0; u_short port_num = 0; char host_name[256]; @@ -52,14 +62,14 @@ EVthin_socket_listen(CManager cm, char **hostname_p, int *port_p) return 0; } { - long seedval = time(NULL) + getpid(); + long seedval = (long)time(NULL) + (long)getpid(); /* port num is free. Constrain to range to standards */ int size = high_bound - low_bound; int tries = 30; int result = SOCKET_ERROR; srand48(seedval); while (tries > 0) { - int target = low_bound + size * drand48(); + int target = low_bound + (int)(size * drand48()); sock_addr.sin_port = htons(target); CMtrace_out(cm, CMConnectionVerbose, "CMSocket trying to bind port %d", target); result = bind(conn_sock, (struct sockaddr *) &sock_addr, @@ -105,7 +115,7 @@ EVthin_socket_listen(CManager cm, char **hostname_p, int *port_p) /* set the port num as one we can be contacted at */ CM_fd_add_select(cm, conn_sock, socket_accept_thin_client, - (void *) cm, (void *) (long)conn_sock); + (void *) cm, (void *) (intptr_t)conn_sock); // int_port_num = (unsigned short)(ntohs(sock_addr.sin_port)); @@ -120,7 +130,7 @@ EVthin_socket_listen(CManager cm, char **hostname_p, int *port_p) typedef struct thin_conn { FFSFile ffsfile; - int fd; + SOCKET fd; int target_stone; int format_count; FMStructDescList *format_list; @@ -200,7 +210,7 @@ thin_data_available(void *cmv, void * conn_datav) } case FFSdata: { FFSTypeHandle next_format = FFSnext_type_handle(cd->ffsfile); - int len = FFSnext_data_length(cd->ffsfile); + size_t len = FFSnext_data_length(cd->ffsfile); int format_num = FMformat_index(FMFormat_of_original(next_format)); void *data = malloc(len); FFSread(cd->ffsfile, data); @@ -238,8 +248,8 @@ static void socket_accept_thin_client(void *cmv, void * sockv) { CManager cm = (CManager) cmv; - int conn_sock = (int) (long)sockv; - int sock; + SOCKET conn_sock = (int) (intptr_t)sockv; + SOCKET sock; struct sockaddr sock_addr; unsigned int sock_len = sizeof(sock_addr); int int_port_num; @@ -287,7 +297,7 @@ socket_accept_thin_client(void *cmv, void * sockv) (void) int_port_num; cd = malloc(sizeof(*cd)); memset(cd, 0, sizeof(*cd)); - cd->ffsfile = open_FFSfd((void*)(long)sock, "r"); + cd->ffsfile = open_FFSfd((void*)(intptr_t)sock, "r"); cd->fd = sock; cd->src_list = malloc(sizeof(cd->src_list[0])); cd->src_list[0] = NULL; From 6535ef97f5b422338de9c9e9b2ac12400aece6b2 Mon Sep 17 00:00:00 2001 From: atl Upstream Date: Wed, 7 Jun 2023 16:41:35 -0400 Subject: [PATCH 017/183] atl 2023-06-07 (f3c23577) Code extracted from: https://github.com/GTkorvo/atl.git at commit f3c23577274edec8685bd7cbbeb7eb35aa9f48e9 (master). Upstream Shortlog ----------------- --- atl.h | 10 +++++-- atom.c | 35 ++++++---------------- atom_server.c | 10 ++----- attr.c | 13 ++++---- tclHash.c | 82 +++++++++++---------------------------------------- 5 files changed, 43 insertions(+), 107 deletions(-) diff --git a/atl.h b/atl.h index 4657ed8f48..8b35cf7167 100644 --- a/atl.h +++ b/atl.h @@ -16,6 +16,12 @@ extern "C" { #ifndef _STDINT_H #include #endif +#if defined(_MSC_VER) +#include +typedef SSIZE_T ssize_t; +#else +#include +#endif typedef int atom_t; @@ -117,7 +123,7 @@ extern int set_int_attr (attr_list attrs, atom_t attr_id, int value ); extern int set_long_attr (attr_list attrs, atom_t attr_id, - long value ); + ssize_t value ); extern int set_string_attr (attr_list attrs, atom_t attr_id, char *string ); @@ -150,7 +156,7 @@ extern int query_attr ( attr_list attrs, atom_t attr_id, attr_value_type *val_type_p, attr_value *value_p); extern int get_int_attr ( attr_list attrs, atom_t attr_id, int *value_p); -extern int get_long_attr ( attr_list attrs, atom_t attr_id, long *value_p); +extern int get_long_attr ( attr_list attrs, atom_t attr_id, ssize_t *value_p); extern int get_double_attr ( attr_list attrs, atom_t attr_id, double *value_p); extern int get_float_attr ( attr_list attrs, atom_t attr_id, float *value_p); extern int get_string_attr ( attr_list attrs, atom_t attr_id, char **value_p); diff --git a/atom.c b/atom.c index 1eaf6f7896..7417164309 100644 --- a/atom.c +++ b/atom.c @@ -72,9 +72,7 @@ static int establish_server_connection(atom_server as, int do_fallback); #define O_NONBLOCK 0x80 #endif static void -set_blocking(as, block) -atom_server as; -int block; +set_blocking(atom_server as, int block) { if (block && ((as->flags & O_NONBLOCK) == 0)) { return; /* already blocking */ @@ -109,9 +107,7 @@ int block; } static void -handle_unexpected_msg(as, msg) -atom_server as; -char *msg; +handle_unexpected_msg(atom_server as, char *msg) { switch (msg[0]) { case 'E':{ @@ -167,9 +163,7 @@ char *msg; static int -enter_atom_into_cache(as, msg) -atom_server as; -send_get_atom_msg_ptr msg; +enter_atom_into_cache(atom_server as, send_get_atom_msg_ptr msg) { int new; char *str; @@ -204,10 +198,7 @@ send_get_atom_msg_ptr msg; } void -set_string_and_atom(as, str, atom) -atom_server as; -char *str; -atom_t atom; +set_string_and_atom(atom_server as, char *str, atom_t atom) { send_get_atom_msg tmp_value; Tcl_HashEntry *entry = NULL, *entry2 = NULL; @@ -315,9 +306,7 @@ fill_hostaddr(void *addr, char *hostname) } static int -establish_server_connection(as, do_fallback) -atom_server as; -int do_fallback; +establish_server_connection(atom_server as, int do_fallback) { SOCKET sock; int delay_value = 1; @@ -411,9 +400,7 @@ extern atom_t ATLget_hash(const char *str); extern atom_t -atom_from_string(as, str) -atom_server as; -char *str; +atom_from_string(atom_server as, char *str) { atom_t atom; @@ -426,9 +413,7 @@ char *str; extern char * -string_from_atom(as, atom) -atom_server as; -atom_t atom; +string_from_atom(atom_server as, atom_t atom) { send_get_atom_msg tmp_rec; send_get_atom_msg_ptr stored; @@ -482,8 +467,7 @@ atom_t atom; extern char * -get_server_id(as) -atom_server as; +get_server_id(atom_server as) { return as->server_id; } @@ -615,8 +599,7 @@ free_atom_server(atom_server as) } atom_server -init_atom_server(cache_style) -atom_cache_type cache_style; +init_atom_server(atom_cache_type cache_style) { atom_server as = (atom_server) malloc(sizeof(atom_server_struct)); diff --git a/atom_server.c b/atom_server.c index 787231f1a1..5e2be06fe4 100644 --- a/atom_server.c +++ b/atom_server.c @@ -149,9 +149,7 @@ establish_server_connection() } int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { int sockfd, tcpfd; int quiet = 0; @@ -344,8 +342,7 @@ process_data(char* buf, char *response) } static void -handle_udp_data(sockfd) -int sockfd; +handle_udp_data(int sockfd) { int numbytes; socklen_t addr_len = sizeof(struct sockaddr); @@ -377,8 +374,7 @@ int sockfd; } static void -handle_tcp_data(sockfd) -int sockfd; +handle_tcp_data(int sockfd) { int numbytes; unsigned char len; diff --git a/attr.c b/attr.c index da7ca89cdc..d94064213f 100644 --- a/attr.c +++ b/attr.c @@ -42,7 +42,7 @@ typedef struct attr_union { double d; float f; int i; - long l; + ssize_t l; void *p; attr_opaque o; }u; @@ -165,8 +165,7 @@ add_pattr(attr_list list, atom_t attr_id, attr_value_type val_type, static void -init_global_atom_server(asp) -atom_server *asp; +init_global_atom_server(atom_server *asp) { static int first = 1; if (*asp != NULL) return; @@ -446,7 +445,7 @@ set_float_attr(attr_list list, atom_t attr_id, double fvalue) } extern int -set_long_attr(attr_list list, atom_t attr_id, long lvalue) +set_long_attr(attr_list list, atom_t attr_id, ssize_t lvalue) { attr_value_type t = Attr_Int4; attr_union tmp; @@ -1237,7 +1236,7 @@ get_int_attr(attr_list l, atom_t attr_id, int *valp) *valp = v.u.i; break; case Attr_Int8: - if (sizeof(long) == 8) *valp = v.u.l; + if (sizeof(size_t) == 8) *valp = (int)v.u.l; *valp = v.u.i; break; case Attr_Float16: @@ -1259,7 +1258,7 @@ get_int_attr(attr_list l, atom_t attr_id, int *valp) } int -get_long_attr(attr_list l, atom_t attr_id, long *valp) +get_long_attr(attr_list l, atom_t attr_id, ssize_t *valp) { attr_value_type t; attr_union v; @@ -1308,7 +1307,7 @@ get_double_attr(attr_list l, atom_t attr_id, double *valp) *valp = v.u.i; break; case Attr_Int8: - if (sizeof(long) == 8) *valp = v.u.l; + if (sizeof(ssize_t) == 8) *valp = (double) v.u.l; *valp = v.u.i; break; case Attr_Float16: diff --git a/tclHash.c b/tclHash.c index 0fbe63b8c2..56636eb03b 100644 --- a/tclHash.c +++ b/tclHash.c @@ -94,12 +94,7 @@ static void tcl_panic _ANSI_ARGS_((char *str)); */ void -Tcl_InitHashTable(tablePtr, keyType) -register Tcl_HashTable *tablePtr; /* Pointer to table record, which - * * is supplied by the caller. */ -int keyType; /* Type of keys to use in table: * - * TCL_STRING_KEYS, TCL_ONE_WORD_KEYS, * - * or an integer >= 2. */ +Tcl_InitHashTable(register Tcl_HashTable *tablePtr, int keyType) { tablePtr->buckets = tablePtr->staticBuckets; tablePtr->staticBuckets[0] = tablePtr->staticBuckets[1] = 0; @@ -142,8 +137,7 @@ int keyType; /* Type of keys to use in table: * */ void -Tcl_DeleteHashEntry(entryPtr) -Tcl_HashEntry *entryPtr; +Tcl_DeleteHashEntry(Tcl_HashEntry *entryPtr) { register Tcl_HashEntry *prevPtr; @@ -182,8 +176,7 @@ Tcl_HashEntry *entryPtr; */ void -Tcl_DeleteHashTable(tablePtr) -register Tcl_HashTable *tablePtr; /* Table to delete. */ +Tcl_DeleteHashTable(register Tcl_HashTable *tablePtr) { register Tcl_HashEntry *hPtr, *nextPtr; int i; @@ -240,10 +233,7 @@ register Tcl_HashTable *tablePtr; /* Table to delete. */ */ Tcl_HashEntry * -Tcl_FirstHashEntry(tablePtr, searchPtr) -Tcl_HashTable *tablePtr; /* Table to search. */ -Tcl_HashSearch *searchPtr; /* Place to store information about * - * progress through the table. */ +Tcl_FirstHashEntry(Tcl_HashTable *tablePtr, Tcl_HashSearch *searchPtr) { searchPtr->tablePtr = tablePtr; searchPtr->nextIndex = 0; @@ -271,12 +261,7 @@ Tcl_HashSearch *searchPtr; /* Place to store information about * */ Tcl_HashEntry * -Tcl_NextHashEntry(searchPtr) -register Tcl_HashSearch *searchPtr; /* Place to store information - * about * progress through the - * table. Must * have been - * initialized by calling * - * Tcl_FirstHashEntry. */ +Tcl_NextHashEntry(register Tcl_HashSearch *searchPtr) { Tcl_HashEntry *hPtr; @@ -313,8 +298,7 @@ register Tcl_HashSearch *searchPtr; /* Place to store information */ char * -Tcl_HashStats(tablePtr) -Tcl_HashTable *tablePtr; /* Table for which to produce stats. */ +Tcl_HashStats(Tcl_HashTable *tablePtr) { #define NUM_COUNTERS 10 int count[NUM_COUNTERS], overflow, i, j; @@ -384,9 +368,7 @@ Tcl_HashTable *tablePtr; /* Table for which to produce stats. */ */ static unsigned int -HashString(string) -register char *string; /* String from which to compute hash - * value. */ +HashString(register char *string) { register unsigned int result; register int c; @@ -438,9 +420,7 @@ register char *string; /* String from which to compute hash */ static Tcl_HashEntry * -StringFind(tablePtr, key) -Tcl_HashTable *tablePtr; /* Table in which to lookup entry. */ -char *key; /* Key to use to find matching entry. */ +StringFind(Tcl_HashTable *tablePtr, char *key) { register Tcl_HashEntry *hPtr; register char *p1, *p2; @@ -488,12 +468,7 @@ char *key; /* Key to use to find matching entry. */ */ static Tcl_HashEntry * -StringCreate(tablePtr, key, newPtr) -Tcl_HashTable *tablePtr; /* Table in which to lookup entry. */ -char *key; /* Key to use to find or create matching * - * entry. */ -int *newPtr; /* Store info here telling whether a new * - * entry was created. */ +StringCreate(Tcl_HashTable *tablePtr, char *key, int *newPtr) { register Tcl_HashEntry *hPtr; register char *p1, *p2; @@ -563,9 +538,7 @@ int *newPtr; /* Store info here telling whether a new * */ static Tcl_HashEntry * -OneWordFind(tablePtr, key) -Tcl_HashTable *tablePtr; /* Table in which to lookup entry. */ -register char *key; /* Key to use to find matching entry. */ +OneWordFind(Tcl_HashTable *tablePtr, register char *key) { register Tcl_HashEntry *hPtr; int index; @@ -607,12 +580,7 @@ register char *key; /* Key to use to find matching entry. */ */ static Tcl_HashEntry * -OneWordCreate(tablePtr, key, newPtr) -Tcl_HashTable *tablePtr; /* Table in which to lookup entry. */ -register char *key; /* Key to use to find or create matching * - * entry. */ -int *newPtr; /* Store info here telling whether a new * - * entry was created. */ +OneWordCreate(Tcl_HashTable *tablePtr, register char *key, int *newPtr) { register Tcl_HashEntry *hPtr; int index; @@ -675,9 +643,7 @@ int *newPtr; /* Store info here telling whether a new * */ static Tcl_HashEntry * -ArrayFind(tablePtr, key) -Tcl_HashTable *tablePtr; /* Table in which to lookup entry. */ -char *key; /* Key to use to find matching entry. */ +ArrayFind(Tcl_HashTable *tablePtr, char *key) { register Tcl_HashEntry *hPtr; int *arrayPtr = (int *) key; @@ -731,12 +697,7 @@ char *key; /* Key to use to find matching entry. */ */ static Tcl_HashEntry * -ArrayCreate(tablePtr, key, newPtr) -Tcl_HashTable *tablePtr; /* Table in which to lookup entry. */ -register char *key; /* Key to use to find or create matching * - * entry. */ -int *newPtr; /* Store info here telling whether a new * - * entry was created. */ +ArrayCreate(Tcl_HashTable *tablePtr, register char *key, int *newPtr) { register Tcl_HashEntry *hPtr; int *arrayPtr = (int *) key; @@ -816,9 +777,7 @@ int *newPtr; /* Store info here telling whether a new * /* ARGSUSED */ static Tcl_HashEntry * -BogusFind(tablePtr, key) -Tcl_HashTable *tablePtr; /* Table in which to lookup entry. */ -char *key; /* Key to use to find matching entry. */ +BogusFind(Tcl_HashTable *tablePtr, char *key) { tcl_panic("called Tcl_FindHashEntry on deleted table"); return NULL; @@ -844,12 +803,7 @@ char *key; /* Key to use to find matching entry. */ /* ARGSUSED */ static Tcl_HashEntry * -BogusCreate(tablePtr, key, newPtr) -Tcl_HashTable *tablePtr; /* Table in which to lookup entry. */ -char *key; /* Key to use to find or create matching * - * entry. */ -int *newPtr; /* Store info here telling whether a new * - * entry was created. */ +BogusCreate(Tcl_HashTable *tablePtr, char *key, int *newPtr) { tcl_panic("called Tcl_CreateHashEntry on deleted table"); return NULL; @@ -876,8 +830,7 @@ int *newPtr; /* Store info here telling whether a new * */ static void -RebuildTable(tablePtr) -register Tcl_HashTable *tablePtr; /* Table to enlarge. */ +RebuildTable(register Tcl_HashTable *tablePtr) { int oldSize, count, index; Tcl_HashEntry **oldBuckets; @@ -940,8 +893,7 @@ register Tcl_HashTable *tablePtr; /* Table to enlarge. */ } static void -tcl_panic(str) -char *str; +tcl_panic(char *str) { fprintf(stderr, "Hash panic: %s\n", str); exit(1); From 1e45542d2f841243a0837da6ccf161c71ce16dc9 Mon Sep 17 00:00:00 2001 From: ffs Upstream Date: Tue, 6 Jun 2023 17:26:10 -0400 Subject: [PATCH 018/183] ffs 2023-06-06 (46d79432) Code extracted from: https://github.com/GTkorvo/ffs.git at commit 46d79432dc67ee91a56ec2acbdc09624b3e4bd08 (master). Upstream Shortlog ----------------- --- CMakeLists.txt | 64 +- cod/cg.c | 64 +- cod/cod.h | 77 +- cod/cod.l | 17 +- cod/cod.y | 149 +- cod/pregen_source/Linux/cod.tab.c | 563 ++-- cod/pregen_source/Linux/cod.y | 161 +- cod/pregen_source/Windows/cod.l | 17 +- cod/pregen_source/Windows/cod.tab.c | 4571 +++++++++++++-------------- cod/pregen_source/Windows/cod.y | 161 +- cod/pregen_source/Windows/lex.yy.c | 688 ++-- cod/standard.c | 189 +- cod/struct.pl | 2 +- cod/tests/atl_test.c | 19 +- cod/tests/compound_assignment.c | 27 +- cod/tests/control.c | 55 +- cod/tests/data_funcs.c | 17 +- cod/tests/data_funcs.h | 3 + cod/tests/general.ops | 27 +- cod/tests/gray.c | 9 +- cod/tests/mix.c | 1 + cod/tests/strings.c | 11 +- cod/tests/structs.c | 17 +- cod/tests/t1.c | 42 +- cod/tests/t10.c | 51 +- cod/tests/t11.c | 1 + cod/tests/t12.c | 13 +- cod/tests/t2.c | 27 +- cod/tests/t3.c | 51 +- cod/tests/t4.c | 5 +- cod/tests/t5.c | 5 +- cod/tests/t6.c | 5 +- cod/tests/t7.c | 17 +- cod/tests/t8.c | 49 +- cod/tests/t9.c | 5 +- cod/tests/time.c | 52 +- cod/tests/xform.c | 1 + config.h.cmake | 3 + ffs/evol.c | 23 +- ffs/ffs.c | 186 +- ffs/ffs.h.in | 96 +- ffs/ffs_conv.c | 349 +- ffs/ffs_file.c | 140 +- ffs/ffs_formats.c | 11 +- ffs/ffs_gen.c | 125 +- ffs/ffs_gen.h | 12 +- ffs/ffs_internal.h | 24 +- ffs/ffs_marshal.c | 14 +- ffs/ffs_marshal.h | 2 +- ffs/nt_io.c | 352 --- ffs/progs/FFScp.c | 4 +- ffs/progs/FFSdump.c | 4 +- ffs/progs/FFSsort.c | 4 +- ffs/tests/adios2_bug.c | 2 +- ffs/tests/context_test.c | 118 +- ffs/tests/context_test2.c | 76 +- ffs/tests/ffs_file_test.c | 52 +- ffs/tests/ffs_index_test.c | 52 +- ffs/tests/ffs_write.c | 38 +- ffs/tests/fortran_test.c | 71 +- ffs/tests/get_set_test.c | 4 +- ffs/tests/marshal_test.c | 2 + ffs/tests/marshal_test2.c | 2 + ffs/tests/no_leaf_test.c | 12 +- ffs/tests/test_file_unique.c | 4 +- ffs/tests/test_funcs.c | 39 +- ffs/tests/test_funcs.h | 9 + ffs/unix_io.c | 284 -- fm/fm.h | 151 +- fm/fm_dump.c | 128 +- fm/fm_formats.c | 435 +-- fm/fm_get.c | 204 +- fm/fm_internal.h | 43 +- {ffs => fm}/io_interface.h | 46 +- fm/lookup3.c | 2 + fm/nt_io.c | 197 +- fm/null_io.c | 30 +- fm/progs/format_cmd.c | 16 +- fm/progs/format_dump.c | 13 +- fm/progs/format_info.c | 4 +- fm/progs/format_server.c | 7 +- fm/progs/server.c | 129 +- fm/server_acts.c | 32 +- fm/tests/align_test.c | 4 +- fm/tests/compat_test.c | 6 +- fm/tests/format_test.c | 47 +- fm/tests/scale_test.c | 16 +- fm/tests/self_format_test.c | 38 +- fm/tests/test_funcs.c | 45 +- fm/tests/test_funcs.h | 4 + fm/unix_io.c | 170 +- fm/xml.c | 161 +- version.c | 2 +- 93 files changed, 5071 insertions(+), 6206 deletions(-) delete mode 100755 ffs/nt_io.c delete mode 100755 ffs/unix_io.c rename {ffs => fm}/io_interface.h (62%) mode change 100755 => 100644 diff --git a/CMakeLists.txt b/CMakeLists.txt index 17643dc1b3..b426801a7b 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -7,7 +7,7 @@ if(POLICY CMP0074) cmake_policy(SET CMP0074 NEW) endif() -project(FFS VERSION 2.0.0) +project(FFS VERSION 3.0.0) # Some boilerplate to setup nice output directories include(GNUInstallDirs) @@ -20,6 +20,7 @@ else() endif() mark_as_advanced(CMAKE_INSTALL_CMAKEDIR) +list(INSERT CMAKE_PREFIX_PATH 0 ${CMAKE_INSTALL_PREFIX}) list(INSERT CMAKE_MODULE_PATH 0 ${PROJECT_SOURCE_DIR}/cmake) if(NOT CMAKE_ARCHIVE_OUTPUT_DIRECTORY) set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY @@ -54,6 +55,23 @@ if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES) set_property(CACHE CMAKE_BUILD_TYPE PROPERTY VALUE RelWithDebInfo) endif() +if(WIN32) + # Automagic to do the DLL / LIB song and dance + set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS TRUE) + + # Silence MSVC warnings + if(CMAKE_C_COMPILER_ID MATCHES "MSVC" OR + CMAKE_C_SIMULATE_ID MATCHES "MSVC") + add_definitions( + -D_CRT_SECURE_NO_DEPRECATE + -D_CRT_SECURE_NO_WARNINGS + -D_SCL_SECURE_NO_DEPRECATE + -D_WINSOCK_DEPRECATED_NO_WARNINGS + -D_CRT_NONSTDC_NO_DEPRECATE) + set (MSVC_PERL_FLAGS "-msvc-long") + endif() +endif() + include(CMakeDependentOption) # Setup shared library defaults. If explicitly specified somehow, then default @@ -64,6 +82,19 @@ cmake_dependent_option(BUILD_SHARED_LIBS "Build shared libraries (so/dylib/dll)." ${SHARED_LIBS_SUPPORTED} "SHARED_LIBS_SUPPORTED" OFF) mark_as_advanced(BUILD_SHARED_LIBS) +if(MSVC) + add_definitions(-D_CRT_SECURE_NO_WARNINGS -DFFS_SRC) +endif() + +# Default to a RelWithDebInfo build if not specified +if(NOT CMAKE_BUILD_TYPE AND NOT CMAKE_CONFIGURATION_TYPES) + set_property(CACHE CMAKE_BUILD_TYPE PROPERTY VALUE RelWithDebInfo) +endif() + +set(TARGET_DEP_INC) +set(TARGET_DEP_LIBS) +set(PKG_DEP_PKG) +set(PKG_DEP_LIBS) include(CheckFunctionExists) include(CheckIncludeFiles) @@ -88,19 +119,25 @@ if(NOT (DEFINED NO_SOCKETS)) set(NO_SOCKETS TRUE) endif() endif() -if(NO_SOCKETS) +if (CMAKE_SYSTEM_NAME STREQUAL "Windows") + set(WINDOWS TRUE) +endif() + +if(NO_SOCKETS AND !WINDOWS) set(FM_SOCKET_IO null_io.c) -elseif(WIN32) - set(FM_SOCKET_IO server_acts.c nt_io.c) +elseif(WINDOWS) + set(FM_SOCKET_IO "server_acts.c;nt_io.c") + set(FFS_FILE_IO nt_io.c) else() - set(FM_SOCKET_IO server_acts.c unix_io.c) + set(FM_SOCKET_IO "server_acts.c;unix_io.c") + set(FFS_FILE_IO unix_io.c) endif() set(FM_SRC_LIST fm_formats.c fm_dump.c lookup3.c string_conversion.c fm_get.c xml.c - ${FM_SOCKET_IO}) + ${FM_SOCKET_IO} ${FFS_FILE_IO}) foreach(FM_SRC ${FM_SRC_LIST}) - list(APPEND FM_MASTER_SRC_LIST fm/${FM_SRC}) + list(APPEND FM_MASTER_SRC_LIST fm/${FM_SRC} ) endforeach() set(COD_SRC_LIST cg.c standard.c) @@ -109,7 +146,7 @@ foreach(COD_SRC ${COD_SRC_LIST}) endforeach() set(FFS_SRC_LIST - ffs.c ffs_formats.c ffs_conv.c ffs_gen.c ffs_file.c unix_io.c evol.c + ffs.c ffs_formats.c ffs_conv.c ffs_gen.c ffs_file.c evol.c ffs_marshal.c) foreach(FFS_SRC ${FFS_SRC_LIST}) list(APPEND FFS_MASTER_SRC_LIST ffs/${FFS_SRC}) @@ -154,7 +191,7 @@ add_custom_target(generated DEPENDS cod_node.c ${BISON_CODParser_OUTPUT_SOURCE}) list(APPEND COD_MASTER_SRC_LIST ${BISON_CODParser_OUTPUT_SOURCE} ${CMAKE_CURRENT_BINARY_DIR}/cod_node.c) - + list(APPEND FFS_MASTER_SRC_LIST ${FM_MASTER_SRC_LIST} ${COD_MASTER_SRC_LIST}) set(FFS_LIBRARY_PREFIX "" CACHE STRING @@ -179,6 +216,9 @@ if(SHARED_LIBS_SUPPORTED) else() set(NO_DYNAMIC_LINKING TRUE) endif() +#if(CMAKE_SYSTEM_NAME STREQUAL "Windows") + set(NO_DYNAMIC_LINKING TRUE) +#endif() target_include_directories(ffs PUBLIC $ @@ -189,7 +229,7 @@ target_include_directories(ffs PUBLIC $ $) -find_package(dill 2.3.1 QUIET) +find_package(dill 3.0.0) option(FFS_USE_DILL "Enable Dill code generation" ${DILL_FOUND}) @@ -231,7 +271,7 @@ CHECK_INCLUDE_FILE(winsock.h HAVE_WINSOCK_H) if(SIZEOF_SIZE_T EQUAL SIZEOF_INT) set(UIO_SIZE_T_TYPE "unsigned int") else() - set(UIO_SIZE_T_TYPE "unsigned long") + set(UIO_SIZE_T_TYPE "size_t") endif() configure_file(ffs/ffs.h.in ffs/ffs.h @ONLY) @@ -260,7 +300,7 @@ if(NOT HAS_IOV_BASE_IOVEC) endif() if(NOT DEFINED FORMAT_SERVER_HOST) - set(FORMAT_SERVER_HOST "eisenhauer.dyndns.org") + set(FORMAT_SERVER_HOST "formathost.cercs.gatech.edu") endif() if(NOT DEFINED FORMAT_SERVICE_DOMAIN) diff --git a/cod/cg.c b/cod/cg.c index bfbf94812e..1b41d8d3af 100644 --- a/cod/cg.c +++ b/cod/cg.c @@ -64,6 +64,8 @@ enum { #if defined(_MSC_VER) #define strdup _strdup +#include +typedef SSIZE_T ssize_t; #endif typedef struct _opnd_enc_info { @@ -339,15 +341,15 @@ generate_arg_str(sm_ref net) arg_count = 0; } for (i = 0; i < arg_count ; i++) { - int len; + size_t len; if (arg_types[i] == -1) { printf("Arg %d not declared\n", i); return arg_str; } len = strlen(arg_str) + 8; arg_str = realloc(arg_str, len); - strcat(arg_str, "%"); - strcat(arg_str, arg_type_str[arg_types[i]]); + strncat(arg_str, "%", len); + strncat(arg_str, arg_type_str[arg_types[i]], len); } free(arg_types); return arg_str; @@ -432,11 +434,7 @@ int cg_get_size(dill_stream s, sm_ref node) static void cg_generate_static_block(dill_stream s, cod_code descr); extern void * -cod_cg_net(net, ret_type, offset_p, code_descriptor) -sm_ref net; -int ret_type; -unsigned int *offset_p; -cod_code code_descriptor; +cod_cg_net(sm_ref net, int ret_type, unsigned int *offset_p, cod_code code_descriptor) { void *init_func; static int debug_cg = -1; @@ -446,7 +444,7 @@ cod_code code_descriptor; dill_exec_handle handle; #endif if (debug_cg == -1) { - debug_cg = (int)(long)(getenv("COD_DEBUG")); + debug_cg = (int)(intptr_t)(getenv("COD_DEBUG")); } #if defined(HAVE_DILL_H) arg_str = generate_arg_str(net); @@ -853,7 +851,7 @@ evaluate_simple_init_and_assign(dill_stream s, sm_ref init, int cg_type, void *v assert(FALSE); } } else { - long l; + ssize_t l; char *val = const_val->node.constant.const_val; if (const_val->node.constant.token == character_constant) { if (*val == 'L') val++ ; @@ -866,11 +864,11 @@ evaluate_simple_init_and_assign(dill_stream s, sm_ref init, int cg_type, void *v val++; switch(*val) { case '0': case '1': case '2': case '3': case '4': case '5': case '6': case '7': - if (sscanf(val, "%lo", &l) != 1) + if (sscanf(val, "%zo", &l) != 1) printf("octal char sscanf failed %s\n", val); break; case 'x': - if (sscanf(val+1, "%lx", &l) != 1) + if (sscanf(val+1, "%zx", &l) != 1) printf("hex char sscanf failed, %s\n", val); break; case '\\': @@ -912,14 +910,14 @@ evaluate_simple_init_and_assign(dill_stream s, sm_ref init, int cg_type, void *v /* hex or octal */ if (val[1] == 'x') { /* hex */ - if (sscanf(val+2, "%lx", &l) != 1) + if (sscanf(val+2, "%zx", &l) != 1) printf("sscanf failed\n"); } else { - if (sscanf(val, "%lo", &l) != 1) + if (sscanf(val, "%zo", &l) != 1) printf("sscanf failed\n"); } } else { - if (sscanf(val, "%ld", &l) != 1) + if (sscanf(val, "%zd", &l) != 1) printf("sscanf failed\n"); } } @@ -937,16 +935,16 @@ evaluate_simple_init_and_assign(dill_stream s, sm_ref init, int cg_type, void *v *(unsigned short *)(var_base) = (unsigned short)l; break; case DILL_I: - *(int *)(var_base) = l; + *(int *)(var_base) = (int)l; break; case DILL_U: - *(unsigned int *)(var_base) = l; + *(unsigned int *)(var_base) = (unsigned int)l; break; case DILL_L: - *(long *)(var_base) = l; + *(ssize_t *)(var_base) = l; break; case DILL_UL: - *(unsigned long *)(var_base) = l; + *(size_t *)(var_base) = l; break; case DILL_P: *(void **)(var_base) = (void*)l; @@ -1004,14 +1002,14 @@ cg_decl(dill_stream s, sm_ref decl, cod_code descr) if (decl->node.declaration.static_var && !is_block_type) { /* do SIMPLE statics */ decl->node.declaration.cg_address = - (void*)(long)descr->static_size_required; + (void*)(ssize_t)descr->static_size_required; descr->static_size_required += 8; if (descr->data == NULL) { descr->data = malloc(descr->static_size_required); } else { descr->data = realloc(descr->data, descr->static_size_required); } - var_base = (char*)descr->data + (long)decl->node.declaration.cg_address; + var_base = (char*)descr->data + (intptr_t)decl->node.declaration.cg_address; } if (var_base) { if (decl->node.declaration.init_value == NULL) { @@ -1074,16 +1072,16 @@ cg_decl(dill_stream s, sm_ref decl, cod_code descr) /* array */ if (decl->node.declaration.static_var) { decl->node.declaration.cg_address = - (void*)(long)descr->static_size_required; + (void*)(ssize_t)descr->static_size_required; descr->static_size_required += ctype->node.array_type_decl.cg_static_size * ctype->node.array_type_decl.cg_element_size; if (descr->data == NULL) { descr->data = malloc(descr->static_size_required); } else { descr->data = realloc(descr->data, descr->static_size_required); } - var_base = (char*)descr->data + (long)decl->node.declaration.cg_address; + var_base = (char*)descr->data + (intptr_t)decl->node.declaration.cg_address; lvar = dill_getreg(s, DILL_P); - dill_addpi(s, lvar, cg_get_static_block(s, descr), (long)decl->node.declaration.cg_address); /* op_i_addpi */ + dill_addpi(s, lvar, cg_get_static_block(s, descr), (intptr_t)decl->node.declaration.cg_address); /* op_i_addpi */ } else { dill_reg block = dill_getvblock(s, ctype->node.array_type_decl.cg_static_size * ctype->node.array_type_decl.cg_element_size); @@ -1093,14 +1091,14 @@ cg_decl(dill_stream s, sm_ref decl, cod_code descr) } else if (!is_block_type) { if (decl->node.declaration.static_var) { decl->node.declaration.cg_address = - (void*)(long)descr->static_size_required; + (void*)(ssize_t)descr->static_size_required; descr->static_size_required += cg_get_size(s, decl); if (descr->data == NULL) { descr->data = malloc(descr->static_size_required); } else { descr->data = realloc(descr->data, descr->static_size_required); } - var_base = (char*)descr->data + (long)decl->node.declaration.cg_address; + var_base = (char*)descr->data + (intptr_t)decl->node.declaration.cg_address; } else if ((decl->node.declaration.addr_taken) || (ctype && (ctype->node_type == cod_struct_type_decl))) { /* make sure it's in memory if its address is taken */ @@ -1115,14 +1113,14 @@ cg_decl(dill_stream s, sm_ref decl, cod_code descr) assert(struct_type->node_type == cod_struct_type_decl); if (decl->node.declaration.static_var) { decl->node.declaration.cg_address = - (void*)(long)descr->static_size_required; + (void*)(ssize_t)descr->static_size_required; descr->static_size_required += cg_get_size(s, decl); if (descr->data == NULL) { descr->data = malloc(descr->static_size_required); } else { descr->data = realloc(descr->data, descr->static_size_required); } - var_base = (char*)descr->data + (long)decl->node.declaration.cg_address; + var_base = (char*)descr->data + (intptr_t)decl->node.declaration.cg_address; } else { if ((struct_type->node.struct_type_decl.cg_size % dill_type_align(s, DILL_D)) != 0) { int struct_size = struct_type->node.struct_type_decl.cg_size; @@ -2415,7 +2413,7 @@ cod_expand_dyn_array(void *base_addr, long new_size, long old_size, long struct_ static int debug_cg = -1; if (debug_cg == -1) { - debug_cg = (int)(long)(getenv("COD_DEBUG")); + debug_cg = (int)(intptr_t)(getenv("COD_DEBUG")); } if (debug_cg) { printf("cod_expand_dyn_array, base_addr %p, old_base %p, new_size %ld, old_size %ld, struct_size %ld\n", @@ -2616,7 +2614,7 @@ cg_expr(dill_stream s, sm_ref expr, int need_assignable, cod_code descr) dill_reg static_block; if (expr->node.declaration.static_var) { static_block = cg_get_static_block(s, descr); - dill_addpi(s, lvar, static_block, (long)expr->node.declaration.cg_address); /* op_i_addpi */ + dill_addpi(s, lvar, static_block, (intptr_t)expr->node.declaration.cg_address); /* op_i_addpi */ } else { dill_setp(s, lvar, expr->node.declaration.cg_address); /* op_i_addpi */ } @@ -3904,7 +3902,7 @@ cod_create_exec_context(cod_code code) void *block = malloc(code->static_size_required); /* copy initialized data */ memcpy(block, code->data, code->static_size_required); - dill_assoc_client_data(cod_ctx->ec, 0x23234, (long)block); + dill_assoc_client_data(cod_ctx->ec, 0x23234, (intptr_t)block); cod_ctx->static_data = block; } else { cod_ctx->static_data = NULL; @@ -3948,12 +3946,12 @@ extern int cod_install_state(cod_exec_context ec, void *state, int length) } extern void -cod_assoc_client_data(cod_exec_context ec, int key, long value) +cod_assoc_client_data(cod_exec_context ec, int key, intptr_t value) { dill_assoc_client_data(ec->ec, key, value); } -extern long +extern intptr_t cod_get_client_data(cod_exec_context ec, int key) { return dill_get_client_data(ec->ec, key); diff --git a/cod/cod.h b/cod/cod.h index c92417ce5d..0a866ea8e8 100644 --- a/cod/cod.h +++ b/cod/cod.h @@ -6,16 +6,15 @@ extern "C" { #endif -#if defined(FUNCPROTO) || defined(__STDC__) || defined(__cplusplus) || defined(c_plusplus) -#ifndef ARGS -#define ARGS(args) args -#endif +#ifndef FFS_DECL_SPEC +#if defined(_MSC_VER) && !defined(FFS_SRC) +#define FFS_DECLSPEC __declspec(dllimport) #else -#ifndef ARGS -#define ARGS(args) (/*args*/) +#define FFS_DECLSPEC #endif #endif +#include /*! * cod_parse_context is the basic handle controlling generation of @@ -113,7 +112,7 @@ typedef cod_extern_entry *cod_extern_list; * \return Will return a new initialized cod_parse_context unless there is * no available memory. */ -extern cod_parse_context new_cod_parse_context(void); +extern FFS_DECLSPEC cod_parse_context new_cod_parse_context(void); /*! * Free a handle to an cod_parse_context. @@ -122,7 +121,7 @@ extern cod_parse_context new_cod_parse_context(void); * Calling this routine frees all memory associated with the parse context, * but not that of code that has been generated from this context. */ -extern void cod_free_parse_context ARGS((cod_parse_context context)); +extern FFS_DECLSPEC void cod_free_parse_context(cod_parse_context context); /*! * Associate a set of "name, external address" pairs with a parse context @@ -136,8 +135,8 @@ extern void cod_free_parse_context ARGS((cod_parse_context context)); * \param externs the list of "name, external address" pairs to be * associated. This list should be terminated with a {NULL, 0} pair. */ -extern void cod_assoc_externs ARGS((cod_parse_context context, - cod_extern_list externs)); +extern FFS_DECLSPEC void cod_assoc_externs(cod_parse_context context, + cod_extern_list externs); /*! * \brief This is used to establish the parameter profile and return type @@ -152,7 +151,7 @@ extern void cod_assoc_externs ARGS((cod_parse_context context, * "int proc(double d, int *i)" * */ -extern void +extern FFS_DECLSPEC void cod_subroutine_declaration(const char *decl, cod_parse_context context); /*! @@ -164,7 +163,7 @@ cod_subroutine_declaration(const char *decl, cod_parse_context context); * the structure. * \param context the context in which the type is to be made available. */ -extern void cod_add_simple_struct_type(const char *name, FMFieldList field_list, +extern FFS_DECLSPEC void cod_add_simple_struct_type(const char *name, FMFieldList field_list, cod_parse_context context); /*! @@ -175,7 +174,7 @@ extern void cod_add_simple_struct_type(const char *name, FMFieldList field_list, * the structures. * \param context the context in which the type is to be made available. */ -extern void cod_add_struct_type(FMStructDescList format_list, +extern FFS_DECLSPEC void cod_add_struct_type(FMStructDescList format_list, cod_parse_context context); /*! @@ -186,7 +185,7 @@ extern void cod_add_struct_type(FMStructDescList format_list, * \param param_num the numeral of the new parameter (0 is first) * \param context the context in which the subroutine is being declared. */ -extern void +extern FFS_DECLSPEC void cod_add_param(const char *id, const char *typ, int param_num, cod_parse_context context); @@ -200,7 +199,7 @@ cod_add_param(const char *id, const char *typ, int param_num, * \param context the context in which the subroutine is being declared. */ #ifdef __FM__ -extern void +extern FFS_DECLSPEC void cod_add_encoded_param(const char *id, char *data, int param_num, FMContext c, cod_parse_context context); #endif @@ -211,7 +210,7 @@ cod_add_encoded_param(const char *id, char *data, int param_num, * \param typ the data type of the return value. * \param context the context in which the subroutine is being declared. */ -extern void +extern FFS_DECLSPEC void cod_set_return_type(char *typ, cod_parse_context context); /*! @@ -247,7 +246,7 @@ typedef struct _cod_code_struct { * \param code the string representing the function body. * \param context the context in which the function body is to be generated. */ -cod_code cod_code_gen ARGS((char *code, cod_parse_context context)); +cod_code cod_code_gen(char *code, cod_parse_context context); /*! * perform syntactical and semantic checking of a function body without @@ -256,7 +255,7 @@ cod_code cod_code_gen ARGS((char *code, cod_parse_context context)); * \param code the string representing the function body. * \param context the context in which the function body is to be checked. */ -int cod_code_verify ARGS((char *code, cod_parse_context context)); +int cod_code_verify(char *code, cod_parse_context context); /*! * Free all resources associated with the generated code associated with the @@ -264,7 +263,7 @@ int cod_code_verify ARGS((char *code, cod_parse_context context)); * * \param code the handle to the resources that will be free'd. */ -extern void cod_code_free ARGS((cod_code code)); +extern FFS_DECLSPEC void cod_code_free(cod_code code); /*! * create an execution context associated with a code block @@ -272,7 +271,7 @@ extern void cod_code_free ARGS((cod_code code)); * \param code the handle to the code bloc * \return the created execution context */ -extern cod_exec_context cod_create_exec_context ARGS((cod_code code)); +extern FFS_DECLSPEC cod_exec_context cod_create_exec_context(cod_code code); /*! * Free all resources associated with the generated code associated with the @@ -280,7 +279,7 @@ extern cod_exec_context cod_create_exec_context ARGS((cod_code code)); * * \param code the handle to the resources that will be free'd. */ -extern void cod_exec_context_free ARGS((cod_exec_context ec)); +extern FFS_DECLSPEC void cod_exec_context_free(cod_exec_context ec); /*! * Associate application-level data with an execution context. This is @@ -292,7 +291,7 @@ extern void cod_exec_context_free ARGS((cod_exec_context ec)); * \param key the value that will serve as a key to retrieve the data * \param value the 'long' data that will be associated with the key */ -extern void cod_assoc_client_data(cod_exec_context ec, int key, long value); +extern FFS_DECLSPEC void cod_assoc_client_data(cod_exec_context ec, int key, intptr_t value); /*! * Retrieve application-level data with an execution context. This is @@ -306,7 +305,7 @@ extern void cod_assoc_client_data(cod_exec_context ec, int key, long value); * \param key the value that will serve as a key to retrieve the data * \return the 'long' data that was associated with the key */ -extern long cod_get_client_data(cod_exec_context ec, int key); +extern FFS_DECLSPEC intptr_t cod_get_client_data(cod_exec_context ec, int key); /*! * Extract static state from an execution context. @@ -316,7 +315,7 @@ extern long cod_get_client_data(cod_exec_context ec, int key); * the length of the returned state block * \return a pointer to the extracted state */ -extern void *cod_extract_state(cod_exec_context ec, int *length_p); +extern FFS_DECLSPEC void *cod_extract_state(cod_exec_context ec, int *length_p); /*! * Install static state into an execution context. @@ -326,7 +325,7 @@ extern void *cod_extract_state(cod_exec_context ec, int *length_p); * \param state_size the size of the state block * \return 1 on success, 0 on failure */ -extern int cod_install_state(cod_exec_context ec, void *state, int length); +extern FFS_DECLSPEC int cod_install_state(cod_exec_context ec, void *state, int length); /*! * \brief This parses a string to determine what external @@ -338,7 +337,7 @@ extern int cod_install_state(cod_exec_context ec, void *state, int length); * \param context The parse context in which the declarations should be * visible. */ -int cod_parse_for_context ARGS((char *code, cod_parse_context context)); +int cod_parse_for_context(char *code, cod_parse_context context); /*! * \brief This parses a string to setup global variables that are @@ -350,14 +349,14 @@ int cod_parse_for_context ARGS((char *code, cod_parse_context context)); * \param context The parse context in which the declarations should be * visible. */ -int cod_parse_for_globals ARGS((char *code, cod_parse_context context)); +int cod_parse_for_globals(char *code, cod_parse_context context); /*! * Duplicate a handle to an cod_parse_context. * * \param context the cod_parse_context to be duplicated. */ -extern cod_parse_context cod_copy_context ARGS((cod_parse_context context)); +extern FFS_DECLSPEC cod_parse_context cod_copy_context(cod_parse_context context); /*! * Duplicate a handle to an cod_parse_context, specifically adapting the results to @@ -366,7 +365,7 @@ extern cod_parse_context cod_copy_context ARGS((cod_parse_context context)); * * \param context the cod_parse_context to be duplicated. */ -extern cod_parse_context cod_copy_globals ARGS((cod_parse_context context)); +extern FFS_DECLSPEC cod_parse_context cod_copy_globals(cod_parse_context context); /*! * err_out_func_t is a function pointer type. Functions matching this @@ -375,7 +374,7 @@ extern cod_parse_context cod_copy_globals ARGS((cod_parse_context context)); * cod_set_error_func() * \param string the textual representation of the error. */ -typedef void (*err_out_func_t) ARGS((void *client_data, char *string)); +typedef void (*err_out_func_t)(void *client_data, char *string); /*! * cod_set_error_func establishes a new error output routine for COD. @@ -385,8 +384,8 @@ typedef void (*err_out_func_t) ARGS((void *client_data, char *string)); * \param context the context in which errors are to be captured * \param err_func the function to be called when errors occur */ -void cod_set_error_func ARGS((cod_parse_context context, - err_out_func_t err_func)); +void cod_set_error_func(cod_parse_context context, + err_out_func_t err_func); /*! * cod_set_dont_coerce_return restricts COD to more strict type matching for expressions and return values @@ -394,14 +393,14 @@ void cod_set_error_func ARGS((cod_parse_context context, * \param context the context to restrict * \param value True if coercion is not to be applied to return values, false by default */ -void cod_set_dont_coerce_return ARGS((cod_parse_context context, int value)); +void cod_set_dont_coerce_return(cod_parse_context context, int value); /*! * This will dump (to stdout) a disassembled version of the * machine code that has been generated * \param code the cod_code handle containing the code to be dumped. */ -void cod_dump ARGS((cod_code code)); +void cod_dump(cod_code code); /*! * This will generate rollback code for message morphing @@ -409,8 +408,8 @@ void cod_dump ARGS((cod_code code)); * \param format2 the old format. This is the format of the output message. * \param xform_code The COD code string that transforms data from format1 to format2. */ -extern cod_code -gen_rollback_code ARGS((FMStructDescList format1, FMStructDescList format2, char *xform_code)); +extern FFS_DECLSPEC cod_code +gen_rollback_code(FMStructDescList format1, FMStructDescList format2, char *xform_code); /*! * \brief This is used to add an integer constant available in a particular context. @@ -418,8 +417,8 @@ gen_rollback_code ARGS((FMStructDescList format1, FMStructDescList format2, char * \param value The value of the constant * \param context the context in which this is to be created */ -extern void cod_add_int_constant_to_parse_context ARGS((const char *id, int value, - cod_parse_context context)); +extern FFS_DECLSPEC void cod_add_int_constant_to_parse_context(const char *id, int value, + cod_parse_context context); /*! * \brief Sets what value cod_closure_context will send to a subroutine. @@ -427,7 +426,7 @@ extern void cod_add_int_constant_to_parse_context ARGS((const char *id, int valu * \param value The value to send * \param context The context in which the subroutine has been declared. */ -extern void cod_set_closure ARGS((char *name, void* value, cod_parse_context context)); +extern FFS_DECLSPEC void cod_set_closure(char *name, void* value, cod_parse_context context); #if defined(__cplusplus) || defined(c_plusplus) } diff --git a/cod/cod.l b/cod/cod.l index 1aeba7fb0f..fd5517b57a 100644 --- a/cod/cod.l +++ b/cod/cod.l @@ -71,8 +71,7 @@ extern int my_yy_input(); #endif static int -is_defined_type(id) -char *id; +is_defined_type(char *id) { int i = 0; while(types && types[i]) { @@ -83,8 +82,7 @@ char *id; } static int -is_enumeration_constant(id) -char *id; +is_enumeration_constant(char *id) { int i = 0; while(enums && enums[i]) { @@ -329,7 +327,7 @@ static char *create_string_from_yytext() static void check_strbuf() { - int cur_len = string_buf_ptr - string_buffer; + intptr_t cur_len = string_buf_ptr - string_buffer; if ((cur_len + 1) == buffer_len) { buffer_len += 20; string_buffer = realloc(string_buffer, buffer_len + 1); @@ -429,19 +427,14 @@ char **enum_constants; static YY_BUFFER_STATE bb = NULL; static void -reset_types_table(defined_types, enumerated_constants) -char **defined_types; -char **enumerated_constants; +reset_types_table(char **defined_types, char **enumerated_constants) { types = defined_types; enums = enumerated_constants; } static void -setup_for_string_parse(string, defined_types, enum_constants) -const char *string; -char **defined_types; -char **enum_constants; +setup_for_string_parse(const char *string, char **defined_types, char **enum_constants) { types = defined_types; enums = enum_constants; diff --git a/cod/cod.y b/cod/cod.y index 8ea0b75c73..5d21652bd8 100644 --- a/cod/cod.y +++ b/cod/cod.y @@ -34,10 +34,6 @@ int cod_kplugins_integration = 0; #include #endif #endif -#include "fm.h" -#include "fm_internal.h" -#include "cod.h" -#include "cod_internal.h" #undef NDEBUG #include "assert.h" #ifndef LINUX_KERNEL_MODULE @@ -61,6 +57,10 @@ int cod_kplugins_integration = 0; #define OP_DBL_Digs (DBL_DIG + 3) #endif #endif +#include "fm.h" +#include "fm_internal.h" +#include "cod.h" +#include "cod_internal.h" #include "structs.h" #ifdef HAVE_DILL_H #include "dill.h" @@ -88,6 +88,11 @@ typedef void *dill_stream; #endif #if defined(_MSC_VER) #define strdup _strdup +#define isatty _isatty +#define fileno _fileno +#include +#include +#include #endif #ifndef LINUX_KERNEL_MODULE #ifdef STDC_HEADERS @@ -112,14 +117,17 @@ char *strdup(const char *s) return p; } #endif +#ifdef _MSC_VER +#undef strncpy +#endif #define YY_NO_INPUT static char* gen_anon() { static int anon_count = 0; - char *ret = malloc(strlen("Anonymous-xxxxxxxxxxxxxxxxx")); - sprintf(ret, "Anonymous-%d", anon_count++); + char *ret = malloc(40); + snprintf(ret, 40, "Anonymous-%d", anon_count++); return ret; } @@ -1872,6 +1880,9 @@ constant : ; %% +#ifdef _MSC_VER +#define YY_NO_UNISTD_H +#endif #include "lex.yy.c" typedef struct scope *scope_ptr; @@ -1936,7 +1947,7 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) { char *out; char *ptr; - if (index(input, '#') == NULL) return NULL; + if (strchr(input, '#') == NULL) return NULL; out = strdup(input); ptr = out; *white = 0; @@ -1950,10 +1961,10 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) char *include_end; ptr += 8; while(isspace(*ptr)) ptr++; - line_end = index(ptr, '\n'); + line_end = strchr(ptr, '\n'); if (line_end) *line_end = 0; if ((*ptr == '<') || (*ptr == '"')) { - include_end = (*ptr == '<') ? index(ptr, '>') : index((ptr+1), '"'); + include_end = (*ptr == '<') ? strchr(ptr, '>') : strchr((ptr+1), '"'); if (!include_end) { printf("improper #include, \"%s\"\n", ptr); goto skip; @@ -1974,10 +1985,10 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) } skip: /* skip to next line */ - ptr = index(ptr, '\n'); + ptr = strchr(ptr, '\n'); while (ptr && (*(ptr - 1) == '\'')) { /* continued line */ - ptr = index(ptr, '\n'); + ptr = strchr(ptr, '\n'); } } { @@ -1992,9 +2003,7 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) } int -cod_parse_for_globals(code, context) -char *code; -cod_parse_context context; +cod_parse_for_globals(char *code, cod_parse_context context) { int ret; context->alloc_globals = 1; @@ -2003,9 +2012,7 @@ cod_parse_context context; return ret; } int -cod_parse_for_context(code, context) -char *code; -cod_parse_context context; +cod_parse_for_context(char *code, cod_parse_context context) { sm_list decls; int ret; @@ -2070,12 +2077,10 @@ static int include_prefix(char *code) break; } } - return tmp - code; + return (int)(intptr_t)(tmp - code); } cod_code -cod_code_gen(code, context) -char *code; -cod_parse_context context; +cod_code_gen(char *code, cod_parse_context context) { sm_ref tmp, tmp2; cod_code ret_code; @@ -2086,7 +2091,7 @@ cod_parse_context context; if (code != NULL) { if ((bracket = include_prefix(code))) { char *prefix = malloc(bracket+1), *tmp; - strncpy(prefix, code, bracket); + strncpy(prefix, code, bracket + 1); prefix[bracket] = 0; tmp = prefix; while(isspace(*tmp)) tmp++; @@ -2138,7 +2143,7 @@ cod_parse_context context; tmp->node.compound_statement.decls = NULL; tmp2->node.compound_statement.decls = NULL; cod_rfree(tmp2); - ret_code->func = (void(*)())(long)func; + ret_code->func = (void(*)(void))(intptr_t)func; return ret_code; } @@ -2156,9 +2161,7 @@ cod_dump(cod_code code) int -cod_code_verify(code, context) -char *code; -cod_parse_context context; +cod_code_verify(char *code, cod_parse_context context) { sm_ref tmp; @@ -2196,8 +2199,7 @@ cod_parse_context context; } extern void -cod_code_free(code) -cod_code code; +cod_code_free(cod_code code) { if (code->code_memory_block) free(code->code_memory_block); if (code->data) free(code->data); @@ -2257,7 +2259,7 @@ print_context(cod_parse_context context, int line, int character) offset = character - 40; } line_copy = copy_line(line_begin + offset); - line_len = strlen(line_copy); + line_len = (int)strlen(line_copy); if (line_len > 60) { line_copy[60] = 0; } @@ -2274,8 +2276,7 @@ print_context(cod_parse_context context, int line, int character) context->error_func(context->client_data, "^\n"); } -void yyerror(str) -char *str; +void yyerror(char *str) { char tmp_str[100]; sprintf(tmp_str, "## Error %s\n", str); @@ -2469,8 +2470,7 @@ struct scope { extern cod_parse_context -cod_copy_context(context) -cod_parse_context context; +cod_copy_context(cod_parse_context context) { int i, count; int type_count = 0; @@ -2507,8 +2507,7 @@ cod_parse_context context; extern void dump_scope(scope_ptr scope); extern cod_parse_context -cod_copy_globals(context) -cod_parse_context context; +cod_copy_globals(cod_parse_context context) { int i, count; int type_count = 0; @@ -2847,7 +2846,7 @@ determine_op_type(cod_parse_context context, sm_ref expr, if ((left_type == DILL_UL) || (right_type == DILL_UL)) return DILL_UL; if ((left_type == DILL_L) || (right_type == DILL_L)) { /* GSE -bug This test should be for *generated* target, not host */ - if (sizeof(long) > sizeof(unsigned int)) { + if (sizeof(intptr_t) > sizeof(unsigned int)) { /* Long can represent all values of unsigned int */ return DILL_L; } else { @@ -3198,7 +3197,7 @@ type_list_to_string(cod_parse_context context, sm_list type_list, int *size) *size = sizeof(int); return strdup("integer"); case DILL_L: - *size = sizeof(long); + *size = sizeof(intptr_t); return strdup("integer"); case DILL_S: *size = sizeof(short); @@ -3207,7 +3206,7 @@ type_list_to_string(cod_parse_context context, sm_list type_list, int *size) *size = sizeof(int); return strdup("unsigned integer"); case DILL_UL: - *size = sizeof(long); + *size = sizeof(intptr_t); return strdup("unsigned integer"); case DILL_US: *size = sizeof(short); @@ -4111,7 +4110,7 @@ unsigned long, long long, unsigned long long */ long i; - int len = strlen(val); + int len = (int)strlen(val); int hex = 0; int specified_unsgned = 0, specified_lng = 0; if (val[0] == '0') { @@ -5610,9 +5609,7 @@ cod_remove_defined_types(cod_parse_context context, int count) } void -cod_add_defined_type(id, context) -char *id; -cod_parse_context context; +cod_add_defined_type(char *id, cod_parse_context context) { int count = 0; while(context->defined_types && context->defined_types[count]) count++; @@ -5629,9 +5626,7 @@ cod_parse_context context; } void -cod_add_enum_const(id, context) -char *id; -cod_parse_context context; +cod_add_enum_const(char *id, cod_parse_context context) { int count = 0; while(context->enumerated_constants && context->enumerated_constants[count]) count++; @@ -5672,9 +5667,7 @@ cod_add_struct_type(FMStructDescList format_list, } static int -str_to_data_type(str, size) -char *str; -int size; +str_to_data_type(char *str, int size) { char *tmp = malloc(strlen(str) + 1); char *free_str = tmp; @@ -5696,7 +5689,7 @@ int size; } if ((strcmp(str, "integer") == 0) || (strcmp(str, "enumeration") == 0)) { free(free_str); - if (size == sizeof(long)) { + if (size == sizeof(intptr_t)) { return DILL_L; } else if (size == sizeof(int)) { return DILL_I; @@ -5709,7 +5702,7 @@ int size; } } else if (strcmp(str, "unsigned integer") == 0) { free(free_str); - if (size == sizeof(long)) { + if (size == sizeof(intptr_t)) { return DILL_UL; } else if (size == sizeof(int)) { return DILL_U; @@ -5744,9 +5737,7 @@ int size; } static int -array_str_to_data_type(str, size) -char *str; -int size; +array_str_to_data_type(char *str, int size) { int ret_type; char field_type[1024]; @@ -5766,14 +5757,8 @@ int size; } static sm_ref -build_subtype_nodes(context, decl, f, desc, err, scope, must_free_p) -cod_parse_context context; -sm_ref decl; -field* f; -FMTypeDesc *desc; -int *err; -scope_ptr scope; -int *must_free_p; +build_subtype_nodes(cod_parse_context context, sm_ref decl, field* f, FMTypeDesc *desc, + int *err, scope_ptr scope, int *must_free_p) { sm_ref ret = NULL; sm_ref subtype = NULL; @@ -5896,16 +5881,8 @@ int *must_free_p; } static void -build_type_nodes(context, decl, f, fields, cg_size, cg_type, desc, err, scope) -cod_parse_context context; -sm_ref decl; -field* f; -sm_list fields; -int cg_size; -int cg_type; -FMTypeDesc* desc; -int *err; -scope_ptr scope; +build_type_nodes(cod_parse_context context, sm_ref decl, field* f, sm_list fields, + int cg_size, int cg_type, FMTypeDesc* desc, int *err, scope_ptr scope) { int must_free_flag = 0; sm_ref complex_type = build_subtype_nodes(context, decl, f, desc, err, scope, &must_free_flag); @@ -5919,13 +5896,7 @@ scope_ptr scope; } static int -semanticize_array_element_node(context, array, super_type, base_type_spec, - scope) -cod_parse_context context; -sm_ref array; -sm_ref super_type; -sm_list base_type_spec; -scope_ptr scope; +semanticize_array_element_node(cod_parse_context context, sm_ref array, sm_ref super_type, sm_list base_type_spec, scope_ptr scope) { if (array->node.array_type_decl.size_expr != NULL) { if (!is_constant_expr(array->node.array_type_decl.size_expr)) { @@ -5993,10 +5964,7 @@ scope_ptr scope; } static int -semanticize_array_type_node(context, array, scope) -cod_parse_context context; -sm_ref array; -scope_ptr scope; +semanticize_array_type_node(cod_parse_context context, sm_ref array, scope_ptr scope) { if (!array->node.array_type_decl.dimensions) { array->node.array_type_decl.dimensions = malloc(sizeof(dimen_s)); @@ -6500,7 +6468,7 @@ static void uniqueify_names(FMStructDescList list, char *prefix) { int i = 0; - int prefix_len = strlen(prefix); + int prefix_len = (int)strlen(prefix); while (list[i].format_name != NULL) { int j = 0; FMFieldList fl = list[i].field_list; @@ -6511,11 +6479,11 @@ uniqueify_names(FMStructDescList list, char *prefix) free((char*)list[i].format_name); list[i].format_name = new_name; while (fl[j].field_name != 0) { - int field_type_len = strlen(fl[j].field_type); + int field_type_len = (int)strlen(fl[j].field_type); char *bracket = strchr(fl[j].field_type, '['); int k; if (bracket != NULL) { - field_type_len = (long) bracket - (long) fl[j].field_type; + field_type_len = (int)((intptr_t) bracket - (intptr_t) fl[j].field_type); } for (k = 0; k < i; k++) { char *new_type; @@ -6603,9 +6571,10 @@ get_constant_float_value(cod_parse_context context, sm_ref expr) default: assert(FALSE); } + return 0.0; } -static long +static intptr_t get_constant_long_value(cod_parse_context context, sm_ref expr) { double dresult; @@ -6624,6 +6593,7 @@ get_constant_long_value(cod_parse_context context, sm_ref expr) default: assert(FALSE); } + return -1; } extern sm_ref @@ -6717,7 +6687,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ is_ivalue=1; break; case op_eq: - ivalue = left_val = right_val; + ivalue = left_val == right_val; is_ivalue=1; break; case op_neq: @@ -6762,7 +6732,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ *free_result = 1; } else { /* we get an integer result */ - long left_val = 0, right_val = 0, value; + intptr_t left_val = 0, right_val = 0, value; char str_val[40]; if (expr->node.operator.left) left_val = get_constant_long_value(context, left); @@ -6841,7 +6811,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ } ret = cod_new_constant(); ret->node.constant.token = integer_constant; - sprintf(str_val, "%ld", value); + sprintf(str_val, "%zd", value); ret->node.constant.const_val = strdup(str_val); *free_result = 1; } @@ -6863,5 +6833,6 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ default: assert(FALSE); } + return NULL; } diff --git a/cod/pregen_source/Linux/cod.tab.c b/cod/pregen_source/Linux/cod.tab.c index 1d42833f97..3e09ac5b37 100644 --- a/cod/pregen_source/Linux/cod.tab.c +++ b/cod/pregen_source/Linux/cod.tab.c @@ -238,9 +238,12 @@ /* Copy the first part of user declarations. */ -#line 1 "cod/cod.y" +#line 1 "cod.y" #include "config.h" +#ifdef __NVCOMPILER +#pragma diag_suppress 550, 111, 941 +#endif #if defined (__INTEL_COMPILER) # pragma warning (disable: 2215) #endif @@ -272,10 +275,6 @@ int cod_kplugins_integration = 0; #include #endif #endif -#include "fm.h" -#include "fm_internal.h" -#include "cod.h" -#include "cod_internal.h" #undef NDEBUG #include "assert.h" #ifndef LINUX_KERNEL_MODULE @@ -299,6 +298,10 @@ int cod_kplugins_integration = 0; #define OP_DBL_Digs (DBL_DIG + 3) #endif #endif +#include "fm.h" +#include "fm_internal.h" +#include "cod.h" +#include "cod_internal.h" #include "structs.h" #ifdef HAVE_DILL_H #include "dill.h" @@ -320,9 +323,17 @@ enum { DILL_EC, DILL_ERR /* no type */ }; +typedef void *dill_stream; +#define dill_create_stream() 0 +#define dill_type_size(c, s) 0 #endif #if defined(_MSC_VER) #define strdup _strdup +#define isatty _isatty +#define fileno _fileno +#include +#include +#include #endif #ifndef LINUX_KERNEL_MODULE #ifdef STDC_HEADERS @@ -347,14 +358,17 @@ char *strdup(const char *s) return p; } #endif +#ifdef _MSC_VER +#undef strncpy +#endif #define YY_NO_INPUT static char* gen_anon() { static int anon_count = 0; - char *ret = malloc(strlen("Anonymous-xxxxxxxxxxxxxxxxx")); - sprintf(ret, "Anonymous-%d", anon_count++); + char *ret = malloc(40); + snprintf(ret, 40, "Anonymous-%d", anon_count++); return ret; } @@ -444,7 +458,7 @@ cod_dup_list(sm_list list) #if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED typedef union YYSTYPE -#line 187 "cod/cod.y" +#line 201 "cod.y" { lx_info info; sm_ref reference; @@ -453,7 +467,7 @@ typedef union YYSTYPE char *string; } /* Line 193 of yacc.c. */ -#line 457 "/Users/eisen/prog/ffs/build/cod.tab.c" +#line 471 "cod.tab.c" YYSTYPE; # define yystype YYSTYPE /* obsolescent; will be withdrawn */ # define YYSTYPE_IS_DECLARED 1 @@ -466,7 +480,7 @@ typedef union YYSTYPE /* Line 216 of yacc.c. */ -#line 470 "/Users/eisen/prog/ffs/build/cod.tab.c" +#line 484 "cod.tab.c" #ifdef short # undef short @@ -836,27 +850,27 @@ static const yytype_int16 yyrhs[] = /* YYRLINE[YYN] -- source line where rule number YYN was defined. */ static const yytype_uint16 yyrline[] = { - 0, 344, 344, 348, 354, 360, 362, 369, 371, 378, - 385, 392, 398, 404, 411, 421, 427, 441, 442, 449, - 456, 463, 470, 485, 488, 491, 494, 497, 500, 506, - 507, 516, 518, 527, 536, 547, 549, 558, 569, 571, - 580, 591, 593, 602, 611, 620, 631, 633, 642, 653, - 655, 666, 668, 679, 681, 692, 694, 705, 707, 718, - 720, 731, 733, 735, 737, 739, 741, 743, 745, 747, - 749, 751, 756, 759, 770, 772, 782, 786, 791, 810, - 817, 809, 900, 906, 911, 917, 922, 928, 933, 941, - 943, 959, 964, 969, 978, 983, 988, 993, 998, 1003, - 1008, 1013, 1018, 1023, 1028, 1033, 1036, 1042, 1045, 1048, - 1054, 1055, 1061, 1062, 1074, 1075, 1126, 1131, 1143, 1146, - 1152, 1157, 1163, 1171, 1178, 1185, 1192, 1199, 1209, 1215, - 1225, 1231, 1239, 1247, 1249, 1263, 1272, 1275, 1284, 1293, - 1300, 1310, 1318, 1326, 1334, 1348, 1359, 1370, 1381, 1401, - 1406, 1419, 1420, 1435, 1441, 1456, 1465, 1504, 1505, 1551, - 1555, 1560, 1565, 1570, 1578, 1586, 1599, 1615, 1620, 1625, - 1638, 1644, 1653, 1659, 1662, 1665, 1671, 1676, 1677, 1678, - 1679, 1680, 1681, 1688, 1695, 1698, 1706, 1708, 1722, 1727, - 1732, 1738, 1744, 1753, 1757, 1767, 1776, 1793, 1803, 1813, - 1827, 1829, 1832, 1839, 1846, 1853, 1860 + 0, 358, 358, 362, 368, 374, 376, 383, 385, 392, + 399, 406, 412, 418, 425, 435, 441, 455, 456, 463, + 470, 477, 484, 499, 502, 505, 508, 511, 514, 520, + 521, 530, 532, 541, 550, 561, 563, 572, 583, 585, + 594, 605, 607, 616, 625, 634, 645, 647, 656, 667, + 669, 680, 682, 693, 695, 706, 708, 719, 721, 732, + 734, 745, 747, 749, 751, 753, 755, 757, 759, 761, + 763, 765, 770, 773, 784, 786, 796, 800, 805, 824, + 831, 823, 914, 920, 925, 931, 936, 942, 947, 955, + 957, 973, 978, 983, 992, 997, 1002, 1007, 1012, 1017, + 1022, 1027, 1032, 1037, 1042, 1047, 1050, 1056, 1059, 1062, + 1068, 1069, 1075, 1076, 1088, 1089, 1140, 1145, 1157, 1160, + 1166, 1171, 1177, 1185, 1192, 1199, 1206, 1213, 1223, 1229, + 1239, 1245, 1253, 1261, 1263, 1277, 1286, 1289, 1298, 1307, + 1314, 1324, 1332, 1340, 1348, 1362, 1373, 1384, 1395, 1415, + 1420, 1433, 1434, 1449, 1455, 1470, 1479, 1518, 1519, 1565, + 1569, 1574, 1579, 1584, 1592, 1600, 1613, 1629, 1634, 1639, + 1652, 1658, 1667, 1673, 1676, 1679, 1685, 1690, 1691, 1692, + 1693, 1694, 1695, 1702, 1709, 1712, 1720, 1722, 1736, 1741, + 1746, 1752, 1758, 1767, 1771, 1781, 1790, 1807, 1817, 1827, + 1841, 1843, 1846, 1853, 1860, 1867, 1874 }; #endif @@ -2137,21 +2151,21 @@ yyparse () switch (yyn) { case 2: -#line 344 "cod/cod.y" +#line 358 "cod.y" { yyparse_value = (sm_ref)(yyvsp[(1) - (1)].list); ;} break; case 3: -#line 348 "cod/cod.y" +#line 362 "cod.y" { yyparse_value = (yyvsp[(1) - (1)].reference); ;} break; case 4: -#line 354 "cod/cod.y" +#line 368 "cod.y" { (yyval.reference) = cod_new_identifier(); (yyval.reference)->node.identifier.id = (yyvsp[(1) - (1)].info).string; @@ -2160,12 +2174,12 @@ yyparse () break; case 6: -#line 363 "cod/cod.y" +#line 377 "cod.y" { (yyval.reference) = (yyvsp[(2) - (3)].reference); ;} break; case 8: -#line 371 "cod/cod.y" +#line 385 "cod.y" { (yyval.reference) = cod_new_element_ref(); (yyval.reference)->node.element_ref.lx_srcpos = (yyvsp[(2) - (4)].info).lx_srcpos; @@ -2175,7 +2189,7 @@ yyparse () break; case 9: -#line 378 "cod/cod.y" +#line 392 "cod.y" { (yyval.reference) = cod_new_field_ref(); (yyval.reference)->node.field_ref.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2185,7 +2199,7 @@ yyparse () break; case 10: -#line 385 "cod/cod.y" +#line 399 "cod.y" { (yyval.reference) = cod_new_subroutine_call(); (yyval.reference)->node.subroutine_call.lx_srcpos = (yyvsp[(2) - (4)].info).lx_srcpos; @@ -2195,7 +2209,7 @@ yyparse () break; case 11: -#line 392 "cod/cod.y" +#line 406 "cod.y" { (yyval.reference) = cod_new_subroutine_call(); (yyval.reference)->node.subroutine_call.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2205,7 +2219,7 @@ yyparse () break; case 12: -#line 398 "cod/cod.y" +#line 412 "cod.y" { (yyval.reference) = cod_new_field_ref(); (yyval.reference)->node.field_ref.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2215,7 +2229,7 @@ yyparse () break; case 13: -#line 404 "cod/cod.y" +#line 418 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (2)].info).lx_srcpos; @@ -2226,7 +2240,7 @@ yyparse () break; case 14: -#line 411 "cod/cod.y" +#line 425 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (2)].info).lx_srcpos; @@ -2237,7 +2251,7 @@ yyparse () break; case 15: -#line 421 "cod/cod.y" +#line 435 "cod.y" { (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = (yyvsp[(1) - (1)].reference); @@ -2246,7 +2260,7 @@ yyparse () break; case 16: -#line 427 "cod/cod.y" +#line 441 "cod.y" { sm_list tmp = (yyvsp[(1) - (3)].list); while (tmp->next != NULL) { @@ -2260,7 +2274,7 @@ yyparse () break; case 18: -#line 442 "cod/cod.y" +#line 456 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; @@ -2271,7 +2285,7 @@ yyparse () break; case 19: -#line 449 "cod/cod.y" +#line 463 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; @@ -2282,7 +2296,7 @@ yyparse () break; case 20: -#line 456 "cod/cod.y" +#line 470 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; @@ -2293,7 +2307,7 @@ yyparse () break; case 21: -#line 463 "cod/cod.y" +#line 477 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; @@ -2304,7 +2318,7 @@ yyparse () break; case 22: -#line 470 "cod/cod.y" +#line 484 "cod.y" { /* dummy up a cast to hold the sm_list of the type */ sm_ref cast = cod_new_cast(); @@ -2321,49 +2335,49 @@ yyparse () break; case 23: -#line 485 "cod/cod.y" +#line 499 "cod.y" { (yyval.info).op = op_address; ;} break; case 24: -#line 488 "cod/cod.y" +#line 502 "cod.y" { (yyval.info).op = op_deref; ;} break; case 25: -#line 491 "cod/cod.y" +#line 505 "cod.y" { (yyval.info).op = op_plus; ;} break; case 26: -#line 494 "cod/cod.y" +#line 508 "cod.y" { (yyval.info).op = op_minus; ;} break; case 27: -#line 497 "cod/cod.y" +#line 511 "cod.y" { (yyval.info).op = op_not; ;} break; case 28: -#line 500 "cod/cod.y" +#line 514 "cod.y" { (yyval.info).op = op_log_neg; ;} break; case 30: -#line 507 "cod/cod.y" +#line 521 "cod.y" { (yyval.reference) = cod_new_cast(); (yyval.reference)->node.cast.lx_srcpos = (yyvsp[(1) - (4)].info).lx_srcpos; @@ -2373,7 +2387,7 @@ yyparse () break; case 32: -#line 519 "cod/cod.y" +#line 533 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2384,7 +2398,7 @@ yyparse () break; case 33: -#line 528 "cod/cod.y" +#line 542 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2395,7 +2409,7 @@ yyparse () break; case 34: -#line 537 "cod/cod.y" +#line 551 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2406,7 +2420,7 @@ yyparse () break; case 36: -#line 550 "cod/cod.y" +#line 564 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.op = op_plus; @@ -2417,7 +2431,7 @@ yyparse () break; case 37: -#line 559 "cod/cod.y" +#line 573 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2428,7 +2442,7 @@ yyparse () break; case 39: -#line 572 "cod/cod.y" +#line 586 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2439,7 +2453,7 @@ yyparse () break; case 40: -#line 581 "cod/cod.y" +#line 595 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2450,7 +2464,7 @@ yyparse () break; case 42: -#line 594 "cod/cod.y" +#line 608 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2461,7 +2475,7 @@ yyparse () break; case 43: -#line 603 "cod/cod.y" +#line 617 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2472,7 +2486,7 @@ yyparse () break; case 44: -#line 612 "cod/cod.y" +#line 626 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2483,7 +2497,7 @@ yyparse () break; case 45: -#line 621 "cod/cod.y" +#line 635 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2494,7 +2508,7 @@ yyparse () break; case 47: -#line 634 "cod/cod.y" +#line 648 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2505,7 +2519,7 @@ yyparse () break; case 48: -#line 643 "cod/cod.y" +#line 657 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2516,7 +2530,7 @@ yyparse () break; case 50: -#line 656 "cod/cod.y" +#line 670 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2527,7 +2541,7 @@ yyparse () break; case 52: -#line 669 "cod/cod.y" +#line 683 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2538,7 +2552,7 @@ yyparse () break; case 54: -#line 682 "cod/cod.y" +#line 696 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2549,7 +2563,7 @@ yyparse () break; case 56: -#line 695 "cod/cod.y" +#line 709 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2560,7 +2574,7 @@ yyparse () break; case 58: -#line 708 "cod/cod.y" +#line 722 "cod.y" { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2571,7 +2585,7 @@ yyparse () break; case 60: -#line 721 "cod/cod.y" +#line 735 "cod.y" { (yyval.reference) = cod_new_conditional_operator(); (yyval.reference)->node.conditional_operator.lx_srcpos = (yyvsp[(2) - (5)].info).lx_srcpos; @@ -2582,67 +2596,67 @@ yyparse () break; case 61: -#line 732 "cod/cod.y" +#line 746 "cod.y" { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_eq;;} break; case 62: -#line 734 "cod/cod.y" +#line 748 "cod.y" { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_mult;;} break; case 63: -#line 736 "cod/cod.y" +#line 750 "cod.y" { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_div;;} break; case 64: -#line 738 "cod/cod.y" +#line 752 "cod.y" { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_modulus;;} break; case 65: -#line 740 "cod/cod.y" +#line 754 "cod.y" { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_plus;;} break; case 66: -#line 742 "cod/cod.y" +#line 756 "cod.y" { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_minus;;} break; case 67: -#line 744 "cod/cod.y" +#line 758 "cod.y" { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_left_shift;;} break; case 68: -#line 746 "cod/cod.y" +#line 760 "cod.y" { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_right_shift;;} break; case 69: -#line 748 "cod/cod.y" +#line 762 "cod.y" { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_arith_and;;} break; case 70: -#line 750 "cod/cod.y" +#line 764 "cod.y" { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_arith_xor;;} break; case 71: -#line 752 "cod/cod.y" +#line 766 "cod.y" { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_arith_or;;} break; case 72: -#line 757 "cod/cod.y" +#line 771 "cod.y" { (yyval.reference) = (yyvsp[(1) - (1)].reference);;} break; case 73: -#line 760 "cod/cod.y" +#line 774 "cod.y" { (yyval.reference) = cod_new_assignment_expression(); (yyval.reference)->node.assignment_expression.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2653,12 +2667,12 @@ yyparse () break; case 74: -#line 771 "cod/cod.y" +#line 785 "cod.y" {(yyval.reference) = (yyvsp[(1) - (1)].reference);;} break; case 75: -#line 773 "cod/cod.y" +#line 787 "cod.y" { (yyval.reference) = cod_new_comma_expression(); (yyval.reference)->node.comma_expression.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -2668,7 +2682,7 @@ yyparse () break; case 77: -#line 786 "cod/cod.y" +#line 800 "cod.y" { (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = (yyvsp[(1) - (1)].reference); @@ -2677,7 +2691,7 @@ yyparse () break; case 78: -#line 791 "cod/cod.y" +#line 805 "cod.y" { sm_list tmp = (yyvsp[(1) - (3)].list); while (tmp->next != NULL) { @@ -2692,7 +2706,7 @@ yyparse () break; case 79: -#line 810 "cod/cod.y" +#line 824 "cod.y" { if (parsing_type) { yyparse_value = (sm_ref) (yyvsp[(1) - (1)].list); @@ -2702,7 +2716,7 @@ yyparse () break; case 80: -#line 817 "cod/cod.y" +#line 831 "cod.y" { /* stop here if we're just doing a proc decl */ if (parsing_param_spec) { (yyval.reference) = (yyvsp[(3) - (3)].list)->node; @@ -2733,7 +2747,7 @@ yyparse () break; case 81: -#line 845 "cod/cod.y" +#line 859 "cod.y" { (yyval.list) = (yyvsp[(3) - (5)].list); sm_list dtmp = (yyvsp[(3) - (5)].list); @@ -2792,14 +2806,14 @@ yyparse () break; case 82: -#line 900 "cod/cod.y" +#line 914 "cod.y" { (yyval.list) = (yyvsp[(1) - (2)].list); ;} break; case 83: -#line 906 "cod/cod.y" +#line 920 "cod.y" { (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = (yyvsp[(1) - (1)].reference); @@ -2808,7 +2822,7 @@ yyparse () break; case 84: -#line 911 "cod/cod.y" +#line 925 "cod.y" { sm_list tmp = malloc(sizeof(struct list_struct)); tmp->node = (yyvsp[(1) - (2)].reference); @@ -2818,7 +2832,7 @@ yyparse () break; case 85: -#line 917 "cod/cod.y" +#line 931 "cod.y" { (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = (yyvsp[(1) - (1)].reference); @@ -2827,7 +2841,7 @@ yyparse () break; case 86: -#line 922 "cod/cod.y" +#line 936 "cod.y" { sm_list tmp = malloc(sizeof(struct list_struct)); tmp->node = (yyvsp[(1) - (2)].reference); @@ -2837,7 +2851,7 @@ yyparse () break; case 87: -#line 928 "cod/cod.y" +#line 942 "cod.y" { (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = (yyvsp[(1) - (1)].reference); @@ -2846,7 +2860,7 @@ yyparse () break; case 88: -#line 933 "cod/cod.y" +#line 947 "cod.y" { sm_list tmp = malloc(sizeof(struct list_struct)); tmp->node = (yyvsp[(1) - (2)].reference); @@ -2856,7 +2870,7 @@ yyparse () break; case 90: -#line 944 "cod/cod.y" +#line 958 "cod.y" { if ((yyvsp[(1) - (3)].reference)->node_type == cod_declaration) { (yyvsp[(1) - (3)].reference)->node.declaration.init_value = (yyvsp[(3) - (3)].reference); @@ -2872,7 +2886,7 @@ yyparse () break; case 91: -#line 959 "cod/cod.y" +#line 973 "cod.y" { (yyval.reference) = cod_new_type_specifier(); (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -2881,7 +2895,7 @@ yyparse () break; case 92: -#line 964 "cod/cod.y" +#line 978 "cod.y" { (yyval.reference) = cod_new_type_specifier(); (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -2890,7 +2904,7 @@ yyparse () break; case 93: -#line 969 "cod/cod.y" +#line 983 "cod.y" { (yyval.reference) = cod_new_type_specifier(); (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -2899,7 +2913,7 @@ yyparse () break; case 94: -#line 978 "cod/cod.y" +#line 992 "cod.y" { (yyval.reference) = cod_new_type_specifier(); (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -2908,7 +2922,7 @@ yyparse () break; case 95: -#line 983 "cod/cod.y" +#line 997 "cod.y" { (yyval.reference) = cod_new_type_specifier(); (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -2917,7 +2931,7 @@ yyparse () break; case 96: -#line 988 "cod/cod.y" +#line 1002 "cod.y" { (yyval.reference) = cod_new_type_specifier(); (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -2926,7 +2940,7 @@ yyparse () break; case 97: -#line 993 "cod/cod.y" +#line 1007 "cod.y" { (yyval.reference) = cod_new_type_specifier(); (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -2935,7 +2949,7 @@ yyparse () break; case 98: -#line 998 "cod/cod.y" +#line 1012 "cod.y" { (yyval.reference) = cod_new_type_specifier(); (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -2944,7 +2958,7 @@ yyparse () break; case 99: -#line 1003 "cod/cod.y" +#line 1017 "cod.y" { (yyval.reference) = cod_new_type_specifier(); (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -2953,7 +2967,7 @@ yyparse () break; case 100: -#line 1008 "cod/cod.y" +#line 1022 "cod.y" { (yyval.reference) = cod_new_type_specifier(); (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -2962,7 +2976,7 @@ yyparse () break; case 101: -#line 1013 "cod/cod.y" +#line 1027 "cod.y" { (yyval.reference) = cod_new_type_specifier(); (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -2971,7 +2985,7 @@ yyparse () break; case 102: -#line 1018 "cod/cod.y" +#line 1032 "cod.y" { (yyval.reference) = cod_new_type_specifier(); (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -2980,7 +2994,7 @@ yyparse () break; case 103: -#line 1023 "cod/cod.y" +#line 1037 "cod.y" { (yyval.reference) = cod_new_type_specifier(); (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -2989,7 +3003,7 @@ yyparse () break; case 104: -#line 1028 "cod/cod.y" +#line 1042 "cod.y" { (yyval.reference) = cod_new_identifier(); (yyval.reference)->node.identifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -2998,49 +3012,49 @@ yyparse () break; case 105: -#line 1033 "cod/cod.y" +#line 1047 "cod.y" { (yyval.reference) = (yyvsp[(1) - (1)].reference); ;} break; case 106: -#line 1036 "cod/cod.y" +#line 1050 "cod.y" { (yyval.reference) = (yyvsp[(1) - (1)].reference); ;} break; case 107: -#line 1042 "cod/cod.y" +#line 1056 "cod.y" { (yyval.reference) = cod_build_parsed_type_node(yycontext, (yyvsp[(2) - (5)].info).string, (yyvsp[(4) - (5)].list)); ;} break; case 108: -#line 1045 "cod/cod.y" +#line 1059 "cod.y" { (yyval.reference) = cod_build_parsed_type_node(yycontext, strdup("anon"), (yyvsp[(3) - (4)].list)); ;} break; case 109: -#line 1048 "cod/cod.y" +#line 1062 "cod.y" { (yyval.reference) = cod_build_parsed_type_node(yycontext, (yyvsp[(2) - (2)].info).string, NULL); ;} break; case 111: -#line 1055 "cod/cod.y" +#line 1069 "cod.y" { yyerror("UNIONs not supported!"); ;} break; case 113: -#line 1062 "cod/cod.y" +#line 1076 "cod.y" { sm_list tmp = (yyvsp[(1) - (2)].list); while (tmp->next != NULL) { @@ -3052,12 +3066,12 @@ yyparse () break; case 114: -#line 1074 "cod/cod.y" +#line 1088 "cod.y" { ;} break; case 115: -#line 1075 "cod/cod.y" +#line 1089 "cod.y" { sm_list type_spec = (yyvsp[(1) - (3)].list); sm_list decl_list = (yyvsp[(2) - (3)].list); @@ -3108,7 +3122,7 @@ yyparse () break; case 116: -#line 1126 "cod/cod.y" +#line 1140 "cod.y" { (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = (yyvsp[(1) - (1)].reference); @@ -3117,7 +3131,7 @@ yyparse () break; case 117: -#line 1131 "cod/cod.y" +#line 1145 "cod.y" { sm_list tmp = (yyvsp[(1) - (3)].list); while (tmp->next != NULL) { @@ -3131,7 +3145,7 @@ yyparse () break; case 119: -#line 1146 "cod/cod.y" +#line 1160 "cod.y" { sm_list tmp = malloc(sizeof(struct list_struct)); tmp->node = (yyvsp[(1) - (2)].reference); @@ -3141,7 +3155,7 @@ yyparse () break; case 120: -#line 1152 "cod/cod.y" +#line 1166 "cod.y" { (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = (yyvsp[(1) - (1)].reference); @@ -3150,7 +3164,7 @@ yyparse () break; case 121: -#line 1157 "cod/cod.y" +#line 1171 "cod.y" { sm_list tmp = malloc(sizeof(struct list_struct)); tmp->node = (yyvsp[(1) - (2)].reference); @@ -3160,7 +3174,7 @@ yyparse () break; case 122: -#line 1163 "cod/cod.y" +#line 1177 "cod.y" { (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = (yyvsp[(1) - (1)].reference); @@ -3169,7 +3183,7 @@ yyparse () break; case 123: -#line 1171 "cod/cod.y" +#line 1185 "cod.y" { (yyval.reference) = cod_new_enum_type_decl(); (yyval.reference)->node.enum_type_decl.id = gen_anon(); @@ -3180,7 +3194,7 @@ yyparse () break; case 124: -#line 1178 "cod/cod.y" +#line 1192 "cod.y" { (yyval.reference) = cod_new_enum_type_decl(); (yyval.reference)->node.enum_type_decl.id = gen_anon(); @@ -3191,7 +3205,7 @@ yyparse () break; case 125: -#line 1185 "cod/cod.y" +#line 1199 "cod.y" { (yyval.reference) = cod_new_enum_type_decl(); (yyval.reference)->node.enum_type_decl.id = (yyvsp[(2) - (5)].info).string; @@ -3202,7 +3216,7 @@ yyparse () break; case 126: -#line 1192 "cod/cod.y" +#line 1206 "cod.y" { (yyval.reference) = cod_new_enum_type_decl(); (yyval.reference)->node.enum_type_decl.id = (yyvsp[(2) - (6)].info).string; @@ -3213,7 +3227,7 @@ yyparse () break; case 127: -#line 1199 "cod/cod.y" +#line 1213 "cod.y" { (yyval.reference) = cod_new_enum_type_decl(); (yyval.reference)->node.enum_type_decl.id = (yyvsp[(2) - (2)].info).string; @@ -3224,7 +3238,7 @@ yyparse () break; case 128: -#line 1209 "cod/cod.y" +#line 1223 "cod.y" { sm_list tmp = malloc(sizeof(struct list_struct)); tmp->node = (yyvsp[(1) - (1)].reference); @@ -3234,7 +3248,7 @@ yyparse () break; case 129: -#line 1215 "cod/cod.y" +#line 1229 "cod.y" { sm_list tmp = malloc(sizeof(struct list_struct)); tmp->node = (yyvsp[(3) - (3)].reference); @@ -3244,7 +3258,7 @@ yyparse () break; case 130: -#line 1225 "cod/cod.y" +#line 1239 "cod.y" { (yyval.reference) = cod_new_enumerator(); (yyval.reference)->node.enumerator.id = (yyvsp[(1) - (3)].info).string; @@ -3253,7 +3267,7 @@ yyparse () break; case 131: -#line 1231 "cod/cod.y" +#line 1245 "cod.y" { (yyval.reference) = cod_new_enumerator(); (yyval.reference)->node.enumerator.id = (yyvsp[(1) - (1)].info).string; @@ -3262,7 +3276,7 @@ yyparse () break; case 132: -#line 1239 "cod/cod.y" +#line 1253 "cod.y" { (yyval.reference) = cod_new_type_specifier(); (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -3271,7 +3285,7 @@ yyparse () break; case 134: -#line 1249 "cod/cod.y" +#line 1263 "cod.y" { (yyval.reference) = (yyvsp[(2) - (2)].reference); if ((yyval.reference)->node_type == cod_declaration) { @@ -3286,7 +3300,7 @@ yyparse () break; case 135: -#line 1263 "cod/cod.y" +#line 1277 "cod.y" { (yyval.reference) = cod_new_declaration(); (yyval.reference)->node.declaration.param_num = -1; @@ -3299,14 +3313,14 @@ yyparse () break; case 136: -#line 1272 "cod/cod.y" +#line 1286 "cod.y" { (yyval.reference) = (yyvsp[(2) - (3)].reference); ;} break; case 137: -#line 1275 "cod/cod.y" +#line 1289 "cod.y" { (yyval.reference) = cod_new_declaration(); (yyval.reference)->node.declaration.param_num = -1; @@ -3319,7 +3333,7 @@ yyparse () break; case 138: -#line 1284 "cod/cod.y" +#line 1298 "cod.y" { (yyval.reference) = cod_new_declaration(); (yyval.reference)->node.declaration.param_num = -1; @@ -3332,7 +3346,7 @@ yyparse () break; case 139: -#line 1293 "cod/cod.y" +#line 1307 "cod.y" { (yyval.reference) = cod_new_array_type_decl(); (yyval.reference)->node.array_type_decl.lx_srcpos = (yyvsp[(2) - (4)].info).lx_srcpos; @@ -3343,7 +3357,7 @@ yyparse () break; case 140: -#line 1300 "cod/cod.y" +#line 1314 "cod.y" { (yyval.reference) = cod_new_array_type_decl(); (yyval.reference)->node.array_type_decl.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; @@ -3354,7 +3368,7 @@ yyparse () break; case 141: -#line 1310 "cod/cod.y" +#line 1324 "cod.y" { sm_ref star = cod_new_type_specifier(); star->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; @@ -3366,7 +3380,7 @@ yyparse () break; case 142: -#line 1318 "cod/cod.y" +#line 1332 "cod.y" { sm_ref star = cod_new_type_specifier(); star->node.type_specifier.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; @@ -3378,7 +3392,7 @@ yyparse () break; case 143: -#line 1326 "cod/cod.y" +#line 1340 "cod.y" { sm_ref star = cod_new_type_specifier(); star->node.type_specifier.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; @@ -3390,7 +3404,7 @@ yyparse () break; case 144: -#line 1334 "cod/cod.y" +#line 1348 "cod.y" { sm_list tmp = (yyvsp[(2) - (3)].list); sm_ref star = cod_new_type_specifier(); @@ -3408,7 +3422,7 @@ yyparse () break; case 145: -#line 1348 "cod/cod.y" +#line 1362 "cod.y" { sm_ref star = cod_new_type_specifier(); if(!cod_segmented_pointers) { @@ -3423,7 +3437,7 @@ yyparse () break; case 146: -#line 1359 "cod/cod.y" +#line 1373 "cod.y" { sm_ref star = cod_new_type_specifier(); if(!cod_segmented_pointers) { @@ -3438,7 +3452,7 @@ yyparse () break; case 147: -#line 1370 "cod/cod.y" +#line 1384 "cod.y" { sm_ref star = cod_new_type_specifier(); if(!cod_segmented_pointers) { @@ -3453,7 +3467,7 @@ yyparse () break; case 148: -#line 1381 "cod/cod.y" +#line 1395 "cod.y" { sm_list tmp = (yyvsp[(2) - (3)].list); sm_ref star = cod_new_type_specifier(); @@ -3474,7 +3488,7 @@ yyparse () break; case 149: -#line 1401 "cod/cod.y" +#line 1415 "cod.y" { (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = (yyvsp[(1) - (1)].reference); @@ -3483,7 +3497,7 @@ yyparse () break; case 150: -#line 1406 "cod/cod.y" +#line 1420 "cod.y" { sm_list tmp = (yyvsp[(1) - (2)].list); while (tmp->next != NULL) { @@ -3497,7 +3511,7 @@ yyparse () break; case 152: -#line 1420 "cod/cod.y" +#line 1434 "cod.y" { sm_list tmp = (yyvsp[(1) - (3)].list); sm_ref id = cod_new_declaration(); @@ -3513,7 +3527,7 @@ yyparse () break; case 153: -#line 1435 "cod/cod.y" +#line 1449 "cod.y" { (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = (yyvsp[(1) - (1)].reference); @@ -3522,7 +3536,7 @@ yyparse () break; case 154: -#line 1441 "cod/cod.y" +#line 1455 "cod.y" { sm_list tmp = (yyvsp[(1) - (3)].list); while (tmp->next != NULL) { @@ -3536,7 +3550,7 @@ yyparse () break; case 155: -#line 1456 "cod/cod.y" +#line 1470 "cod.y" { (yyval.reference) = cod_new_declaration(); (yyval.reference)->node.declaration.param_num = -1; @@ -3549,7 +3563,7 @@ yyparse () break; case 156: -#line 1465 "cod/cod.y" +#line 1479 "cod.y" { (yyval.reference) = (yyvsp[(2) - (2)].reference); if ((yyval.reference)->node_type == cod_declaration) { @@ -3590,7 +3604,7 @@ yyparse () break; case 158: -#line 1505 "cod/cod.y" +#line 1519 "cod.y" { sm_list tmp = (yyvsp[(1) - (2)].list); while (tmp->next != NULL) { @@ -3602,7 +3616,7 @@ yyparse () break; case 160: -#line 1556 "cod/cod.y" +#line 1570 "cod.y" { (yyval.reference) = cod_new_initializer_list(); (yyval.reference)->node.initializer_list.initializers = (yyvsp[(2) - (3)].list); @@ -3610,7 +3624,7 @@ yyparse () break; case 161: -#line 1561 "cod/cod.y" +#line 1575 "cod.y" { (yyval.reference) = cod_new_initializer_list(); (yyval.reference)->node.initializer_list.initializers = (yyvsp[(2) - (4)].list); @@ -3618,12 +3632,12 @@ yyparse () break; case 162: -#line 1565 "cod/cod.y" +#line 1579 "cod.y" { (yyval.reference) = (yyvsp[(1) - (1)].reference);;} break; case 163: -#line 1570 "cod/cod.y" +#line 1584 "cod.y" { sm_ref initializer = cod_new_initializer(); initializer->node.initializer.designation = (yyvsp[(1) - (2)].list); @@ -3635,7 +3649,7 @@ yyparse () break; case 164: -#line 1578 "cod/cod.y" +#line 1592 "cod.y" { sm_ref initializer = cod_new_initializer(); initializer->node.initializer.designation = NULL; @@ -3647,7 +3661,7 @@ yyparse () break; case 165: -#line 1586 "cod/cod.y" +#line 1600 "cod.y" { sm_list tmp = (yyvsp[(1) - (4)].list); sm_ref initializer = cod_new_initializer(); @@ -3664,7 +3678,7 @@ yyparse () break; case 166: -#line 1599 "cod/cod.y" +#line 1613 "cod.y" { sm_list tmp = (yyvsp[(1) - (3)].list); sm_ref initializer = cod_new_initializer(); @@ -3681,12 +3695,12 @@ yyparse () break; case 167: -#line 1616 "cod/cod.y" +#line 1630 "cod.y" { (yyval.list) = (yyvsp[(1) - (2)].list);;} break; case 168: -#line 1620 "cod/cod.y" +#line 1634 "cod.y" { (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = (yyvsp[(1) - (1)].reference); @@ -3695,7 +3709,7 @@ yyparse () break; case 169: -#line 1625 "cod/cod.y" +#line 1639 "cod.y" { sm_list tmp = (yyvsp[(1) - (2)].list); while (tmp->next != NULL) { @@ -3709,7 +3723,7 @@ yyparse () break; case 170: -#line 1639 "cod/cod.y" +#line 1653 "cod.y" { (yyval.reference) = cod_new_designator(); (yyval.reference)->node.designator.expression = (yyvsp[(2) - (3)].reference); @@ -3718,7 +3732,7 @@ yyparse () break; case 171: -#line 1645 "cod/cod.y" +#line 1659 "cod.y" { (yyval.reference) = cod_new_designator(); (yyval.reference)->node.designator.expression = NULL; @@ -3727,7 +3741,7 @@ yyparse () break; case 172: -#line 1653 "cod/cod.y" +#line 1667 "cod.y" { sm_list tmp = malloc(sizeof(struct list_struct)); tmp->node = (yyvsp[(1) - (1)].reference); @@ -3737,21 +3751,21 @@ yyparse () break; case 173: -#line 1659 "cod/cod.y" +#line 1673 "cod.y" { (yyval.list) = (yyvsp[(1) - (1)].list); ;} break; case 174: -#line 1662 "cod/cod.y" +#line 1676 "cod.y" { (yyval.list) = NULL; ;} break; case 175: -#line 1665 "cod/cod.y" +#line 1679 "cod.y" { sm_list tmp = malloc(sizeof(struct list_struct)); tmp->node = (yyvsp[(2) - (2)].reference); @@ -3761,14 +3775,14 @@ yyparse () break; case 176: -#line 1671 "cod/cod.y" +#line 1685 "cod.y" { (yyval.list) = cod_append_list((yyvsp[(1) - (2)].list), (yyvsp[(2) - (2)].list)); ;} break; case 183: -#line 1688 "cod/cod.y" +#line 1702 "cod.y" { (yyval.reference) = cod_new_label_statement(); (yyval.reference)->node.label_statement.name = (yyvsp[(1) - (3)].info).string; @@ -3777,14 +3791,14 @@ yyparse () break; case 184: -#line 1695 "cod/cod.y" +#line 1709 "cod.y" { (yyval.reference) = cod_new_compound_statement(); ;} break; case 185: -#line 1698 "cod/cod.y" +#line 1712 "cod.y" { int count = (yyvsp[(1) - (3)].info).type_stack_count; (yyval.reference) = cod_new_compound_statement(); @@ -3794,12 +3808,12 @@ yyparse () break; case 186: -#line 1706 "cod/cod.y" +#line 1720 "cod.y" { (yyval.list) = (yyvsp[(1) - (1)].list); ;} break; case 187: -#line 1708 "cod/cod.y" +#line 1722 "cod.y" { if ((yyvsp[(1) - (2)].list) == NULL) { (yyval.list) = (yyvsp[(2) - (2)].list); @@ -3815,7 +3829,7 @@ yyparse () break; case 188: -#line 1722 "cod/cod.y" +#line 1736 "cod.y" { (yyval.reference) = cod_new_return_statement(); (yyval.reference)->node.return_statement.expression = (yyvsp[(2) - (3)].reference); @@ -3824,7 +3838,7 @@ yyparse () break; case 189: -#line 1727 "cod/cod.y" +#line 1741 "cod.y" { (yyval.reference) = cod_new_return_statement(); (yyval.reference)->node.return_statement.expression = NULL; @@ -3833,7 +3847,7 @@ yyparse () break; case 190: -#line 1732 "cod/cod.y" +#line 1746 "cod.y" { (yyval.reference) = cod_new_jump_statement(); (yyval.reference)->node.jump_statement.continue_flag = 1; @@ -3843,7 +3857,7 @@ yyparse () break; case 191: -#line 1738 "cod/cod.y" +#line 1752 "cod.y" { (yyval.reference) = cod_new_jump_statement(); (yyval.reference)->node.jump_statement.continue_flag = 0; @@ -3853,7 +3867,7 @@ yyparse () break; case 192: -#line 1744 "cod/cod.y" +#line 1758 "cod.y" { (yyval.reference) = cod_new_jump_statement(); (yyval.reference)->node.jump_statement.continue_flag = 0; @@ -3863,14 +3877,14 @@ yyparse () break; case 193: -#line 1753 "cod/cod.y" +#line 1767 "cod.y" { (yyval.reference) = NULL; ;} break; case 194: -#line 1757 "cod/cod.y" +#line 1771 "cod.y" { (yyval.reference) = cod_new_expression_statement(); (yyval.reference)->node.expression_statement.expression = (yyvsp[(1) - (2)].reference); @@ -3878,7 +3892,7 @@ yyparse () break; case 195: -#line 1768 "cod/cod.y" +#line 1782 "cod.y" { (yyval.reference) = cod_new_selection_statement(); (yyval.reference)->node.selection_statement.lx_srcpos = (yyvsp[(1) - (5)].info).lx_srcpos; @@ -3889,7 +3903,7 @@ yyparse () break; case 196: -#line 1777 "cod/cod.y" +#line 1791 "cod.y" { (yyval.reference) = cod_new_selection_statement(); (yyval.reference)->node.selection_statement.lx_srcpos = (yyvsp[(1) - (7)].info).lx_srcpos; @@ -3900,7 +3914,7 @@ yyparse () break; case 197: -#line 1794 "cod/cod.y" +#line 1808 "cod.y" { (yyval.reference) = cod_new_iteration_statement(); (yyval.reference)->node.iteration_statement.lx_srcpos = (yyvsp[(1) - (9)].info).lx_srcpos; @@ -3912,7 +3926,7 @@ yyparse () break; case 198: -#line 1804 "cod/cod.y" +#line 1818 "cod.y" { (yyval.reference) = cod_new_iteration_statement(); (yyval.reference)->node.iteration_statement.lx_srcpos = (yyvsp[(1) - (5)].info).lx_srcpos; @@ -3924,7 +3938,7 @@ yyparse () break; case 199: -#line 1814 "cod/cod.y" +#line 1828 "cod.y" { (yyval.reference) = cod_new_iteration_statement(); (yyval.reference)->node.iteration_statement.lx_srcpos = (yyvsp[(1) - (7)].info).lx_srcpos; @@ -3937,12 +3951,12 @@ yyparse () break; case 200: -#line 1827 "cod/cod.y" +#line 1841 "cod.y" { (yyval.reference) = NULL; ;} break; case 202: -#line 1832 "cod/cod.y" +#line 1846 "cod.y" { (yyval.reference) = cod_new_constant(); (yyval.reference)->node.constant.token = integer_constant; @@ -3952,7 +3966,7 @@ yyparse () break; case 203: -#line 1839 "cod/cod.y" +#line 1853 "cod.y" { (yyval.reference) = cod_new_constant(); (yyval.reference)->node.constant.token = floating_constant; @@ -3962,7 +3976,7 @@ yyparse () break; case 204: -#line 1846 "cod/cod.y" +#line 1860 "cod.y" { (yyval.reference) = cod_new_constant(); (yyval.reference)->node.constant.token = string_constant; @@ -3972,7 +3986,7 @@ yyparse () break; case 205: -#line 1853 "cod/cod.y" +#line 1867 "cod.y" { (yyval.reference) = cod_new_constant(); (yyval.reference)->node.constant.token = character_constant; @@ -3982,7 +3996,7 @@ yyparse () break; case 206: -#line 1860 "cod/cod.y" +#line 1874 "cod.y" { (yyval.reference) = cod_new_constant(); (yyval.reference)->node.constant.token = character_constant; @@ -3993,7 +4007,7 @@ yyparse () /* Line 1267 of yacc.c. */ -#line 3997 "/Users/eisen/prog/ffs/build/cod.tab.c" +#line 4011 "cod.tab.c" default: break; } YY_SYMBOL_PRINT ("-> $$ =", yyr1[yyn], &yyval, &yyloc); @@ -4207,8 +4221,11 @@ yyparse () } -#line 1868 "cod/cod.y" +#line 1882 "cod.y" +#ifdef _MSC_VER +#define YY_NO_UNISTD_H +#endif #include "lex.yy.c" typedef struct scope *scope_ptr; @@ -4273,7 +4290,7 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) { char *out; char *ptr; - if (index(input, '#') == NULL) return NULL; + if (strchr(input, '#') == NULL) return NULL; out = strdup(input); ptr = out; *white = 0; @@ -4287,10 +4304,10 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) char *include_end; ptr += 8; while(isspace(*ptr)) ptr++; - line_end = index(ptr, '\n'); + line_end = strchr(ptr, '\n'); if (line_end) *line_end = 0; if ((*ptr == '<') || (*ptr == '"')) { - include_end = (*ptr == '<') ? index(ptr, '>') : index((ptr+1), '"'); + include_end = (*ptr == '<') ? strchr(ptr, '>') : strchr((ptr+1), '"'); if (!include_end) { printf("improper #include, \"%s\"\n", ptr); goto skip; @@ -4311,10 +4328,10 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) } skip: /* skip to next line */ - ptr = index(ptr, '\n'); + ptr = strchr(ptr, '\n'); while (ptr && (*(ptr - 1) == '\'')) { /* continued line */ - ptr = index(ptr, '\n'); + ptr = strchr(ptr, '\n'); } } { @@ -4329,9 +4346,7 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) } int -cod_parse_for_globals(code, context) -char *code; -cod_parse_context context; +cod_parse_for_globals(char *code, cod_parse_context context) { int ret; context->alloc_globals = 1; @@ -4340,9 +4355,7 @@ cod_parse_context context; return ret; } int -cod_parse_for_context(code, context) -char *code; -cod_parse_context context; +cod_parse_for_context(char *code, cod_parse_context context) { sm_list decls; int ret; @@ -4407,12 +4420,10 @@ static int include_prefix(char *code) break; } } - return tmp - code; + return (int)(intptr_t)(tmp - code); } cod_code -cod_code_gen(code, context) -char *code; -cod_parse_context context; +cod_code_gen(char *code, cod_parse_context context) { sm_ref tmp, tmp2; cod_code ret_code; @@ -4423,7 +4434,7 @@ cod_parse_context context; if (code != NULL) { if ((bracket = include_prefix(code))) { char *prefix = malloc(bracket+1), *tmp; - strncpy(prefix, code, bracket); + strncpy(prefix, code, bracket + 1); prefix[bracket] = 0; tmp = prefix; while(isspace(*tmp)) tmp++; @@ -4475,7 +4486,7 @@ cod_parse_context context; tmp->node.compound_statement.decls = NULL; tmp2->node.compound_statement.decls = NULL; cod_rfree(tmp2); - ret_code->func = (void(*)())(long)func; + ret_code->func = (void(*)(void))(intptr_t)func; return ret_code; } @@ -4493,9 +4504,7 @@ cod_dump(cod_code code) int -cod_code_verify(code, context) -char *code; -cod_parse_context context; +cod_code_verify(char *code, cod_parse_context context) { sm_ref tmp; @@ -4533,8 +4542,7 @@ cod_parse_context context; } extern void -cod_code_free(code) -cod_code code; +cod_code_free(cod_code code) { if (code->code_memory_block) free(code->code_memory_block); if (code->data) free(code->data); @@ -4594,7 +4602,7 @@ print_context(cod_parse_context context, int line, int character) offset = character - 40; } line_copy = copy_line(line_begin + offset); - line_len = strlen(line_copy); + line_len = (int)strlen(line_copy); if (line_len > 60) { line_copy[60] = 0; } @@ -4611,8 +4619,7 @@ print_context(cod_parse_context context, int line, int character) context->error_func(context->client_data, "^\n"); } -void yyerror(str) -char *str; +void yyerror(char *str) { char tmp_str[100]; sprintf(tmp_str, "## Error %s\n", str); @@ -4806,8 +4813,7 @@ struct scope { extern cod_parse_context -cod_copy_context(context) -cod_parse_context context; +cod_copy_context(cod_parse_context context) { int i, count; int type_count = 0; @@ -4844,8 +4850,7 @@ cod_parse_context context; extern void dump_scope(scope_ptr scope); extern cod_parse_context -cod_copy_globals(context) -cod_parse_context context; +cod_copy_globals(cod_parse_context context) { int i, count; int type_count = 0; @@ -5184,7 +5189,7 @@ determine_op_type(cod_parse_context context, sm_ref expr, if ((left_type == DILL_UL) || (right_type == DILL_UL)) return DILL_UL; if ((left_type == DILL_L) || (right_type == DILL_L)) { /* GSE -bug This test should be for *generated* target, not host */ - if (sizeof(long) > sizeof(unsigned int)) { + if (sizeof(intptr_t) > sizeof(unsigned int)) { /* Long can represent all values of unsigned int */ return DILL_L; } else { @@ -5535,7 +5540,7 @@ type_list_to_string(cod_parse_context context, sm_list type_list, int *size) *size = sizeof(int); return strdup("integer"); case DILL_L: - *size = sizeof(long); + *size = sizeof(intptr_t); return strdup("integer"); case DILL_S: *size = sizeof(short); @@ -5544,7 +5549,7 @@ type_list_to_string(cod_parse_context context, sm_list type_list, int *size) *size = sizeof(int); return strdup("unsigned integer"); case DILL_UL: - *size = sizeof(long); + *size = sizeof(intptr_t); return strdup("unsigned integer"); case DILL_US: *size = sizeof(short); @@ -6448,7 +6453,7 @@ unsigned long, long long, unsigned long long */ long i; - int len = strlen(val); + int len = (int)strlen(val); int hex = 0; int specified_unsgned = 0, specified_lng = 0; if (val[0] == '0') { @@ -7947,9 +7952,7 @@ cod_remove_defined_types(cod_parse_context context, int count) } void -cod_add_defined_type(id, context) -char *id; -cod_parse_context context; +cod_add_defined_type(char *id, cod_parse_context context) { int count = 0; while(context->defined_types && context->defined_types[count]) count++; @@ -7966,9 +7969,7 @@ cod_parse_context context; } void -cod_add_enum_const(id, context) -char *id; -cod_parse_context context; +cod_add_enum_const(char *id, cod_parse_context context) { int count = 0; while(context->enumerated_constants && context->enumerated_constants[count]) count++; @@ -8009,9 +8010,7 @@ cod_add_struct_type(FMStructDescList format_list, } static int -str_to_data_type(str, size) -char *str; -int size; +str_to_data_type(char *str, int size) { char *tmp = malloc(strlen(str) + 1); char *free_str = tmp; @@ -8033,7 +8032,7 @@ int size; } if ((strcmp(str, "integer") == 0) || (strcmp(str, "enumeration") == 0)) { free(free_str); - if (size == sizeof(long)) { + if (size == sizeof(intptr_t)) { return DILL_L; } else if (size == sizeof(int)) { return DILL_I; @@ -8046,7 +8045,7 @@ int size; } } else if (strcmp(str, "unsigned integer") == 0) { free(free_str); - if (size == sizeof(long)) { + if (size == sizeof(intptr_t)) { return DILL_UL; } else if (size == sizeof(int)) { return DILL_U; @@ -8081,9 +8080,7 @@ int size; } static int -array_str_to_data_type(str, size) -char *str; -int size; +array_str_to_data_type(char *str, int size) { int ret_type; char field_type[1024]; @@ -8103,14 +8100,8 @@ int size; } static sm_ref -build_subtype_nodes(context, decl, f, desc, err, scope, must_free_p) -cod_parse_context context; -sm_ref decl; -field* f; -FMTypeDesc *desc; -int *err; -scope_ptr scope; -int *must_free_p; +build_subtype_nodes(cod_parse_context context, sm_ref decl, field* f, FMTypeDesc *desc, + int *err, scope_ptr scope, int *must_free_p) { sm_ref ret = NULL; sm_ref subtype = NULL; @@ -8206,8 +8197,8 @@ int *must_free_p; ret->node.reference_type_decl.cg_referenced_type = DILL_ERR; ret->node.reference_type_decl.sm_complex_referenced_type = subtype; if (must_free_flag) { - if (ret->node.array_type_decl.freeable_complex_element_type) { - cod_rfree(ret->node.array_type_decl.freeable_complex_element_type); + if (ret->node.reference_type_decl.freeable_complex_referenced_type) { + cod_rfree(ret->node.reference_type_decl.freeable_complex_referenced_type); } ret->node.reference_type_decl.freeable_complex_referenced_type = subtype; } @@ -8233,16 +8224,8 @@ int *must_free_p; } static void -build_type_nodes(context, decl, f, fields, cg_size, cg_type, desc, err, scope) -cod_parse_context context; -sm_ref decl; -field* f; -sm_list fields; -int cg_size; -int cg_type; -FMTypeDesc* desc; -int *err; -scope_ptr scope; +build_type_nodes(cod_parse_context context, sm_ref decl, field* f, sm_list fields, + int cg_size, int cg_type, FMTypeDesc* desc, int *err, scope_ptr scope) { int must_free_flag = 0; sm_ref complex_type = build_subtype_nodes(context, decl, f, desc, err, scope, &must_free_flag); @@ -8256,13 +8239,7 @@ scope_ptr scope; } static int -semanticize_array_element_node(context, array, super_type, base_type_spec, - scope) -cod_parse_context context; -sm_ref array; -sm_ref super_type; -sm_list base_type_spec; -scope_ptr scope; +semanticize_array_element_node(cod_parse_context context, sm_ref array, sm_ref super_type, sm_list base_type_spec, scope_ptr scope) { if (array->node.array_type_decl.size_expr != NULL) { if (!is_constant_expr(array->node.array_type_decl.size_expr)) { @@ -8330,10 +8307,7 @@ scope_ptr scope; } static int -semanticize_array_type_node(context, array, scope) -cod_parse_context context; -sm_ref array; -scope_ptr scope; +semanticize_array_type_node(cod_parse_context context, sm_ref array, scope_ptr scope) { if (!array->node.array_type_decl.dimensions) { array->node.array_type_decl.dimensions = malloc(sizeof(dimen_s)); @@ -8837,7 +8811,7 @@ static void uniqueify_names(FMStructDescList list, char *prefix) { int i = 0; - int prefix_len = strlen(prefix); + int prefix_len = (int)strlen(prefix); while (list[i].format_name != NULL) { int j = 0; FMFieldList fl = list[i].field_list; @@ -8845,14 +8819,14 @@ uniqueify_names(FMStructDescList list, char *prefix) malloc(strlen(list[i].format_name) + prefix_len + 1); strcpy(new_name, prefix); strcpy(new_name + prefix_len, list[i].format_name); - free(list[i].format_name); + free((char*)list[i].format_name); list[i].format_name = new_name; while (fl[j].field_name != 0) { - int field_type_len = strlen(fl[j].field_type); + int field_type_len = (int)strlen(fl[j].field_type); char *bracket = strchr(fl[j].field_type, '['); int k; if (bracket != NULL) { - field_type_len = (long) bracket - (long) fl[j].field_type; + field_type_len = (int)((intptr_t) bracket - (intptr_t) fl[j].field_type); } for (k = 0; k < i; k++) { char *new_type; @@ -8940,9 +8914,10 @@ get_constant_float_value(cod_parse_context context, sm_ref expr) default: assert(FALSE); } + return 0.0; } -static long +static intptr_t get_constant_long_value(cod_parse_context context, sm_ref expr) { double dresult; @@ -8961,6 +8936,7 @@ get_constant_long_value(cod_parse_context context, sm_ref expr) default: assert(FALSE); } + return -1; } extern sm_ref @@ -9054,7 +9030,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ is_ivalue=1; break; case op_eq: - ivalue = left_val = right_val; + ivalue = left_val == right_val; is_ivalue=1; break; case op_neq: @@ -9099,7 +9075,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ *free_result = 1; } else { /* we get an integer result */ - long left_val = 0, right_val = 0, value; + intptr_t left_val = 0, right_val = 0, value; char str_val[40]; if (expr->node.operator.left) left_val = get_constant_long_value(context, left); @@ -9178,7 +9154,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ } ret = cod_new_constant(); ret->node.constant.token = integer_constant; - sprintf(str_val, "%ld", value); + sprintf(str_val, "%zd", value); ret->node.constant.const_val = strdup(str_val); *free_result = 1; } @@ -9200,6 +9176,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ default: assert(FALSE); } + return NULL; } diff --git a/cod/pregen_source/Linux/cod.y b/cod/pregen_source/Linux/cod.y index 6fcf832a75..5d21652bd8 100644 --- a/cod/pregen_source/Linux/cod.y +++ b/cod/pregen_source/Linux/cod.y @@ -1,5 +1,8 @@ %{ #include "config.h" +#ifdef __NVCOMPILER +#pragma diag_suppress 550, 111, 941 +#endif #if defined (__INTEL_COMPILER) # pragma warning (disable: 2215) #endif @@ -31,10 +34,6 @@ int cod_kplugins_integration = 0; #include #endif #endif -#include "fm.h" -#include "fm_internal.h" -#include "cod.h" -#include "cod_internal.h" #undef NDEBUG #include "assert.h" #ifndef LINUX_KERNEL_MODULE @@ -58,6 +57,10 @@ int cod_kplugins_integration = 0; #define OP_DBL_Digs (DBL_DIG + 3) #endif #endif +#include "fm.h" +#include "fm_internal.h" +#include "cod.h" +#include "cod_internal.h" #include "structs.h" #ifdef HAVE_DILL_H #include "dill.h" @@ -79,9 +82,17 @@ enum { DILL_EC, DILL_ERR /* no type */ }; +typedef void *dill_stream; +#define dill_create_stream() 0 +#define dill_type_size(c, s) 0 #endif #if defined(_MSC_VER) #define strdup _strdup +#define isatty _isatty +#define fileno _fileno +#include +#include +#include #endif #ifndef LINUX_KERNEL_MODULE #ifdef STDC_HEADERS @@ -106,14 +117,17 @@ char *strdup(const char *s) return p; } #endif +#ifdef _MSC_VER +#undef strncpy +#endif #define YY_NO_INPUT static char* gen_anon() { static int anon_count = 0; - char *ret = malloc(strlen("Anonymous-xxxxxxxxxxxxxxxxx")); - sprintf(ret, "Anonymous-%d", anon_count++); + char *ret = malloc(40); + snprintf(ret, 40, "Anonymous-%d", anon_count++); return ret; } @@ -1866,6 +1880,9 @@ constant : ; %% +#ifdef _MSC_VER +#define YY_NO_UNISTD_H +#endif #include "lex.yy.c" typedef struct scope *scope_ptr; @@ -1930,7 +1947,7 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) { char *out; char *ptr; - if (index(input, '#') == NULL) return NULL; + if (strchr(input, '#') == NULL) return NULL; out = strdup(input); ptr = out; *white = 0; @@ -1944,10 +1961,10 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) char *include_end; ptr += 8; while(isspace(*ptr)) ptr++; - line_end = index(ptr, '\n'); + line_end = strchr(ptr, '\n'); if (line_end) *line_end = 0; if ((*ptr == '<') || (*ptr == '"')) { - include_end = (*ptr == '<') ? index(ptr, '>') : index((ptr+1), '"'); + include_end = (*ptr == '<') ? strchr(ptr, '>') : strchr((ptr+1), '"'); if (!include_end) { printf("improper #include, \"%s\"\n", ptr); goto skip; @@ -1968,10 +1985,10 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) } skip: /* skip to next line */ - ptr = index(ptr, '\n'); + ptr = strchr(ptr, '\n'); while (ptr && (*(ptr - 1) == '\'')) { /* continued line */ - ptr = index(ptr, '\n'); + ptr = strchr(ptr, '\n'); } } { @@ -1986,9 +2003,7 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) } int -cod_parse_for_globals(code, context) -char *code; -cod_parse_context context; +cod_parse_for_globals(char *code, cod_parse_context context) { int ret; context->alloc_globals = 1; @@ -1997,9 +2012,7 @@ cod_parse_context context; return ret; } int -cod_parse_for_context(code, context) -char *code; -cod_parse_context context; +cod_parse_for_context(char *code, cod_parse_context context) { sm_list decls; int ret; @@ -2064,12 +2077,10 @@ static int include_prefix(char *code) break; } } - return tmp - code; + return (int)(intptr_t)(tmp - code); } cod_code -cod_code_gen(code, context) -char *code; -cod_parse_context context; +cod_code_gen(char *code, cod_parse_context context) { sm_ref tmp, tmp2; cod_code ret_code; @@ -2080,7 +2091,7 @@ cod_parse_context context; if (code != NULL) { if ((bracket = include_prefix(code))) { char *prefix = malloc(bracket+1), *tmp; - strncpy(prefix, code, bracket); + strncpy(prefix, code, bracket + 1); prefix[bracket] = 0; tmp = prefix; while(isspace(*tmp)) tmp++; @@ -2132,7 +2143,7 @@ cod_parse_context context; tmp->node.compound_statement.decls = NULL; tmp2->node.compound_statement.decls = NULL; cod_rfree(tmp2); - ret_code->func = (void(*)())(long)func; + ret_code->func = (void(*)(void))(intptr_t)func; return ret_code; } @@ -2150,9 +2161,7 @@ cod_dump(cod_code code) int -cod_code_verify(code, context) -char *code; -cod_parse_context context; +cod_code_verify(char *code, cod_parse_context context) { sm_ref tmp; @@ -2190,8 +2199,7 @@ cod_parse_context context; } extern void -cod_code_free(code) -cod_code code; +cod_code_free(cod_code code) { if (code->code_memory_block) free(code->code_memory_block); if (code->data) free(code->data); @@ -2251,7 +2259,7 @@ print_context(cod_parse_context context, int line, int character) offset = character - 40; } line_copy = copy_line(line_begin + offset); - line_len = strlen(line_copy); + line_len = (int)strlen(line_copy); if (line_len > 60) { line_copy[60] = 0; } @@ -2268,8 +2276,7 @@ print_context(cod_parse_context context, int line, int character) context->error_func(context->client_data, "^\n"); } -void yyerror(str) -char *str; +void yyerror(char *str) { char tmp_str[100]; sprintf(tmp_str, "## Error %s\n", str); @@ -2463,8 +2470,7 @@ struct scope { extern cod_parse_context -cod_copy_context(context) -cod_parse_context context; +cod_copy_context(cod_parse_context context) { int i, count; int type_count = 0; @@ -2501,8 +2507,7 @@ cod_parse_context context; extern void dump_scope(scope_ptr scope); extern cod_parse_context -cod_copy_globals(context) -cod_parse_context context; +cod_copy_globals(cod_parse_context context) { int i, count; int type_count = 0; @@ -2841,7 +2846,7 @@ determine_op_type(cod_parse_context context, sm_ref expr, if ((left_type == DILL_UL) || (right_type == DILL_UL)) return DILL_UL; if ((left_type == DILL_L) || (right_type == DILL_L)) { /* GSE -bug This test should be for *generated* target, not host */ - if (sizeof(long) > sizeof(unsigned int)) { + if (sizeof(intptr_t) > sizeof(unsigned int)) { /* Long can represent all values of unsigned int */ return DILL_L; } else { @@ -3192,7 +3197,7 @@ type_list_to_string(cod_parse_context context, sm_list type_list, int *size) *size = sizeof(int); return strdup("integer"); case DILL_L: - *size = sizeof(long); + *size = sizeof(intptr_t); return strdup("integer"); case DILL_S: *size = sizeof(short); @@ -3201,7 +3206,7 @@ type_list_to_string(cod_parse_context context, sm_list type_list, int *size) *size = sizeof(int); return strdup("unsigned integer"); case DILL_UL: - *size = sizeof(long); + *size = sizeof(intptr_t); return strdup("unsigned integer"); case DILL_US: *size = sizeof(short); @@ -4105,7 +4110,7 @@ unsigned long, long long, unsigned long long */ long i; - int len = strlen(val); + int len = (int)strlen(val); int hex = 0; int specified_unsgned = 0, specified_lng = 0; if (val[0] == '0') { @@ -5604,9 +5609,7 @@ cod_remove_defined_types(cod_parse_context context, int count) } void -cod_add_defined_type(id, context) -char *id; -cod_parse_context context; +cod_add_defined_type(char *id, cod_parse_context context) { int count = 0; while(context->defined_types && context->defined_types[count]) count++; @@ -5623,9 +5626,7 @@ cod_parse_context context; } void -cod_add_enum_const(id, context) -char *id; -cod_parse_context context; +cod_add_enum_const(char *id, cod_parse_context context) { int count = 0; while(context->enumerated_constants && context->enumerated_constants[count]) count++; @@ -5666,9 +5667,7 @@ cod_add_struct_type(FMStructDescList format_list, } static int -str_to_data_type(str, size) -char *str; -int size; +str_to_data_type(char *str, int size) { char *tmp = malloc(strlen(str) + 1); char *free_str = tmp; @@ -5690,7 +5689,7 @@ int size; } if ((strcmp(str, "integer") == 0) || (strcmp(str, "enumeration") == 0)) { free(free_str); - if (size == sizeof(long)) { + if (size == sizeof(intptr_t)) { return DILL_L; } else if (size == sizeof(int)) { return DILL_I; @@ -5703,7 +5702,7 @@ int size; } } else if (strcmp(str, "unsigned integer") == 0) { free(free_str); - if (size == sizeof(long)) { + if (size == sizeof(intptr_t)) { return DILL_UL; } else if (size == sizeof(int)) { return DILL_U; @@ -5738,9 +5737,7 @@ int size; } static int -array_str_to_data_type(str, size) -char *str; -int size; +array_str_to_data_type(char *str, int size) { int ret_type; char field_type[1024]; @@ -5760,14 +5757,8 @@ int size; } static sm_ref -build_subtype_nodes(context, decl, f, desc, err, scope, must_free_p) -cod_parse_context context; -sm_ref decl; -field* f; -FMTypeDesc *desc; -int *err; -scope_ptr scope; -int *must_free_p; +build_subtype_nodes(cod_parse_context context, sm_ref decl, field* f, FMTypeDesc *desc, + int *err, scope_ptr scope, int *must_free_p) { sm_ref ret = NULL; sm_ref subtype = NULL; @@ -5863,8 +5854,8 @@ int *must_free_p; ret->node.reference_type_decl.cg_referenced_type = DILL_ERR; ret->node.reference_type_decl.sm_complex_referenced_type = subtype; if (must_free_flag) { - if (ret->node.array_type_decl.freeable_complex_element_type) { - cod_rfree(ret->node.array_type_decl.freeable_complex_element_type); + if (ret->node.reference_type_decl.freeable_complex_referenced_type) { + cod_rfree(ret->node.reference_type_decl.freeable_complex_referenced_type); } ret->node.reference_type_decl.freeable_complex_referenced_type = subtype; } @@ -5890,16 +5881,8 @@ int *must_free_p; } static void -build_type_nodes(context, decl, f, fields, cg_size, cg_type, desc, err, scope) -cod_parse_context context; -sm_ref decl; -field* f; -sm_list fields; -int cg_size; -int cg_type; -FMTypeDesc* desc; -int *err; -scope_ptr scope; +build_type_nodes(cod_parse_context context, sm_ref decl, field* f, sm_list fields, + int cg_size, int cg_type, FMTypeDesc* desc, int *err, scope_ptr scope) { int must_free_flag = 0; sm_ref complex_type = build_subtype_nodes(context, decl, f, desc, err, scope, &must_free_flag); @@ -5913,13 +5896,7 @@ scope_ptr scope; } static int -semanticize_array_element_node(context, array, super_type, base_type_spec, - scope) -cod_parse_context context; -sm_ref array; -sm_ref super_type; -sm_list base_type_spec; -scope_ptr scope; +semanticize_array_element_node(cod_parse_context context, sm_ref array, sm_ref super_type, sm_list base_type_spec, scope_ptr scope) { if (array->node.array_type_decl.size_expr != NULL) { if (!is_constant_expr(array->node.array_type_decl.size_expr)) { @@ -5987,10 +5964,7 @@ scope_ptr scope; } static int -semanticize_array_type_node(context, array, scope) -cod_parse_context context; -sm_ref array; -scope_ptr scope; +semanticize_array_type_node(cod_parse_context context, sm_ref array, scope_ptr scope) { if (!array->node.array_type_decl.dimensions) { array->node.array_type_decl.dimensions = malloc(sizeof(dimen_s)); @@ -6494,7 +6468,7 @@ static void uniqueify_names(FMStructDescList list, char *prefix) { int i = 0; - int prefix_len = strlen(prefix); + int prefix_len = (int)strlen(prefix); while (list[i].format_name != NULL) { int j = 0; FMFieldList fl = list[i].field_list; @@ -6502,14 +6476,14 @@ uniqueify_names(FMStructDescList list, char *prefix) malloc(strlen(list[i].format_name) + prefix_len + 1); strcpy(new_name, prefix); strcpy(new_name + prefix_len, list[i].format_name); - free(list[i].format_name); + free((char*)list[i].format_name); list[i].format_name = new_name; while (fl[j].field_name != 0) { - int field_type_len = strlen(fl[j].field_type); + int field_type_len = (int)strlen(fl[j].field_type); char *bracket = strchr(fl[j].field_type, '['); int k; if (bracket != NULL) { - field_type_len = (long) bracket - (long) fl[j].field_type; + field_type_len = (int)((intptr_t) bracket - (intptr_t) fl[j].field_type); } for (k = 0; k < i; k++) { char *new_type; @@ -6597,9 +6571,10 @@ get_constant_float_value(cod_parse_context context, sm_ref expr) default: assert(FALSE); } + return 0.0; } -static long +static intptr_t get_constant_long_value(cod_parse_context context, sm_ref expr) { double dresult; @@ -6618,6 +6593,7 @@ get_constant_long_value(cod_parse_context context, sm_ref expr) default: assert(FALSE); } + return -1; } extern sm_ref @@ -6711,7 +6687,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ is_ivalue=1; break; case op_eq: - ivalue = left_val = right_val; + ivalue = left_val == right_val; is_ivalue=1; break; case op_neq: @@ -6756,7 +6732,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ *free_result = 1; } else { /* we get an integer result */ - long left_val = 0, right_val = 0, value; + intptr_t left_val = 0, right_val = 0, value; char str_val[40]; if (expr->node.operator.left) left_val = get_constant_long_value(context, left); @@ -6835,7 +6811,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ } ret = cod_new_constant(); ret->node.constant.token = integer_constant; - sprintf(str_val, "%ld", value); + sprintf(str_val, "%zd", value); ret->node.constant.const_val = strdup(str_val); *free_result = 1; } @@ -6857,5 +6833,6 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ default: assert(FALSE); } + return NULL; } diff --git a/cod/pregen_source/Windows/cod.l b/cod/pregen_source/Windows/cod.l index 1aeba7fb0f..fd5517b57a 100644 --- a/cod/pregen_source/Windows/cod.l +++ b/cod/pregen_source/Windows/cod.l @@ -71,8 +71,7 @@ extern int my_yy_input(); #endif static int -is_defined_type(id) -char *id; +is_defined_type(char *id) { int i = 0; while(types && types[i]) { @@ -83,8 +82,7 @@ char *id; } static int -is_enumeration_constant(id) -char *id; +is_enumeration_constant(char *id) { int i = 0; while(enums && enums[i]) { @@ -329,7 +327,7 @@ static char *create_string_from_yytext() static void check_strbuf() { - int cur_len = string_buf_ptr - string_buffer; + intptr_t cur_len = string_buf_ptr - string_buffer; if ((cur_len + 1) == buffer_len) { buffer_len += 20; string_buffer = realloc(string_buffer, buffer_len + 1); @@ -429,19 +427,14 @@ char **enum_constants; static YY_BUFFER_STATE bb = NULL; static void -reset_types_table(defined_types, enumerated_constants) -char **defined_types; -char **enumerated_constants; +reset_types_table(char **defined_types, char **enumerated_constants) { types = defined_types; enums = enumerated_constants; } static void -setup_for_string_parse(string, defined_types, enum_constants) -const char *string; -char **defined_types; -char **enum_constants; +setup_for_string_parse(const char *string, char **defined_types, char **enum_constants) { types = defined_types; enums = enum_constants; diff --git a/cod/pregen_source/Windows/cod.tab.c b/cod/pregen_source/Windows/cod.tab.c index 1d42833f97..55f7fbfbdb 100644 --- a/cod/pregen_source/Windows/cod.tab.c +++ b/cod/pregen_source/Windows/cod.tab.c @@ -1,14 +1,14 @@ -/* A Bison parser, made by GNU Bison 2.3. */ +/* A Bison parser, made by GNU Bison 3.8.2. */ -/* Skeleton implementation for Bison's Yacc-like parsers in C +/* Bison implementation for Yacc-like parsers in C - Copyright (C) 1984, 1989, 1990, 2000, 2001, 2002, 2003, 2004, 2005, 2006 - Free Software Foundation, Inc. + Copyright (C) 1984, 1989-1990, 2000-2015, 2018-2021 Free Software Foundation, + Inc. - This program is free software; you can redistribute it and/or modify + This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by - the Free Software Foundation; either version 2, or (at your option) - any later version. + the Free Software Foundation, either version 3 of the License, or + (at your option) any later version. This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of @@ -16,9 +16,7 @@ GNU General Public License for more details. You should have received a copy of the GNU General Public License - along with this program; if not, write to the Free Software - Foundation, Inc., 51 Franklin Street, Fifth Floor, - Boston, MA 02110-1301, USA. */ + along with this program. If not, see . */ /* As a special exception, you may create a larger work that contains part or all of the Bison parser skeleton and distribute that work @@ -36,6 +34,10 @@ /* C LALR(1) parser skeleton written by Richard Stallman, by simplifying the original so-called "semantic" parser. */ +/* DO NOT RELY ON FEATURES THAT ARE NOT DOCUMENTED in the manual, + especially those whose name start with YY_ or yy_. They are + private implementation details that can be changed or removed. */ + /* All symbols defined below should begin with yy or YY, to avoid infringing on user name space. This should be done even for local variables, as they might otherwise be expanded by user macros. @@ -43,11 +45,11 @@ define necessary library symbols; they are noted "INFRINGES ON USER NAME SPACE" below. */ -/* Identify Bison output. */ -#define YYBISON 1 +/* Identify Bison output, and Bison version. */ +#define YYBISON 30802 -/* Bison version. */ -#define YYBISON_VERSION "2.3" +/* Bison version string. */ +#define YYBISON_VERSION "3.8.2" /* Skeleton name. */ #define YYSKELETON_NAME "yacc.c" @@ -55,192 +57,22 @@ /* Pure parsers. */ #define YYPURE 0 -/* Using locations. */ -#define YYLSP_NEEDED 0 +/* Push parsers. */ +#define YYPUSH 0 + +/* Pull parsers. */ +#define YYPULL 1 -/* Tokens. */ -#ifndef YYTOKENTYPE -# define YYTOKENTYPE - /* Put the tokens into the symbol table, so that GDB and other debuggers - know about them. */ - enum yytokentype { - ARROW = 258, - LPAREN = 259, - RPAREN = 260, - LCURLY = 261, - RCURLY = 262, - COLON = 263, - QUESTION = 264, - LBRACKET = 265, - RBRACKET = 266, - DOT = 267, - STAR = 268, - AT = 269, - SLASH = 270, - MODULUS = 271, - PLUS = 272, - MINUS = 273, - TILDE = 274, - LEQ = 275, - LT = 276, - GEQ = 277, - GT = 278, - EQ = 279, - NEQ = 280, - LEFT_SHIFT = 281, - RIGHT_SHIFT = 282, - ASSIGN = 283, - MUL_ASSIGN = 284, - DIV_ASSIGN = 285, - MOD_ASSIGN = 286, - ADD_ASSIGN = 287, - SUB_ASSIGN = 288, - LEFT_ASSIGN = 289, - RIGHT_ASSIGN = 290, - AND_ASSIGN = 291, - XOR_ASSIGN = 292, - OR_ASSIGN = 293, - LOG_OR = 294, - LOG_AND = 295, - ARITH_OR = 296, - ARITH_AND = 297, - ARITH_XOR = 298, - INC_OP = 299, - DEC_OP = 300, - BANG = 301, - SEMI = 302, - IF = 303, - ELSE = 304, - FOR = 305, - DO = 306, - WHILE = 307, - CHAR = 308, - SHORT = 309, - INT = 310, - LONG = 311, - UNSIGNED = 312, - SIGNED = 313, - FLOAT = 314, - DOUBLE = 315, - VOID = 316, - STRING = 317, - STATIC = 318, - EXTERN_TOKEN = 319, - STRUCT = 320, - ENUM = 321, - UNION = 322, - CONST = 323, - SIZEOF = 324, - TYPEDEF = 325, - RETURN_TOKEN = 326, - CONTINUE = 327, - BREAK = 328, - GOTO = 329, - PRINT = 330, - COMMA = 331, - DOTDOTDOT = 332, - integer_constant = 333, - character_constant = 334, - string_constant = 335, - floating_constant = 336, - identifier_ref = 337, - type_id = 338, - enumeration_constant = 339 - }; -#endif -/* Tokens. */ -#define ARROW 258 -#define LPAREN 259 -#define RPAREN 260 -#define LCURLY 261 -#define RCURLY 262 -#define COLON 263 -#define QUESTION 264 -#define LBRACKET 265 -#define RBRACKET 266 -#define DOT 267 -#define STAR 268 -#define AT 269 -#define SLASH 270 -#define MODULUS 271 -#define PLUS 272 -#define MINUS 273 -#define TILDE 274 -#define LEQ 275 -#define LT 276 -#define GEQ 277 -#define GT 278 -#define EQ 279 -#define NEQ 280 -#define LEFT_SHIFT 281 -#define RIGHT_SHIFT 282 -#define ASSIGN 283 -#define MUL_ASSIGN 284 -#define DIV_ASSIGN 285 -#define MOD_ASSIGN 286 -#define ADD_ASSIGN 287 -#define SUB_ASSIGN 288 -#define LEFT_ASSIGN 289 -#define RIGHT_ASSIGN 290 -#define AND_ASSIGN 291 -#define XOR_ASSIGN 292 -#define OR_ASSIGN 293 -#define LOG_OR 294 -#define LOG_AND 295 -#define ARITH_OR 296 -#define ARITH_AND 297 -#define ARITH_XOR 298 -#define INC_OP 299 -#define DEC_OP 300 -#define BANG 301 -#define SEMI 302 -#define IF 303 -#define ELSE 304 -#define FOR 305 -#define DO 306 -#define WHILE 307 -#define CHAR 308 -#define SHORT 309 -#define INT 310 -#define LONG 311 -#define UNSIGNED 312 -#define SIGNED 313 -#define FLOAT 314 -#define DOUBLE 315 -#define VOID 316 -#define STRING 317 -#define STATIC 318 -#define EXTERN_TOKEN 319 -#define STRUCT 320 -#define ENUM 321 -#define UNION 322 -#define CONST 323 -#define SIZEOF 324 -#define TYPEDEF 325 -#define RETURN_TOKEN 326 -#define CONTINUE 327 -#define BREAK 328 -#define GOTO 329 -#define PRINT 330 -#define COMMA 331 -#define DOTDOTDOT 332 -#define integer_constant 333 -#define character_constant 334 -#define string_constant 335 -#define floating_constant 336 -#define identifier_ref 337 -#define type_id 338 -#define enumeration_constant 339 - - - - -/* Copy the first part of user declarations. */ -#line 1 "cod/cod.y" + +/* First part of user prologue. */ +#line 1 "cod.y" #include "config.h" +#ifdef __NVCOMPILER +#pragma diag_suppress 550, 111, 941 +#endif #if defined (__INTEL_COMPILER) # pragma warning (disable: 2215) #endif @@ -272,10 +104,6 @@ int cod_kplugins_integration = 0; #include #endif #endif -#include "fm.h" -#include "fm_internal.h" -#include "cod.h" -#include "cod_internal.h" #undef NDEBUG #include "assert.h" #ifndef LINUX_KERNEL_MODULE @@ -299,6 +127,10 @@ int cod_kplugins_integration = 0; #define OP_DBL_Digs (DBL_DIG + 3) #endif #endif +#include "fm.h" +#include "fm_internal.h" +#include "cod.h" +#include "cod_internal.h" #include "structs.h" #ifdef HAVE_DILL_H #include "dill.h" @@ -320,9 +152,17 @@ enum { DILL_EC, DILL_ERR /* no type */ }; +typedef void *dill_stream; +#define dill_create_stream() 0 +#define dill_type_size(c, s) 0 #endif #if defined(_MSC_VER) #define strdup _strdup +#define isatty _isatty +#define fileno _fileno +#include +#include +#include #endif #ifndef LINUX_KERNEL_MODULE #ifdef STDC_HEADERS @@ -347,14 +187,17 @@ char *strdup(const char *s) return p; } #endif +#ifdef _MSC_VER +#undef strncpy +#endif #define YY_NO_INPUT static char* gen_anon() { static int anon_count = 0; - char *ret = malloc(strlen("Anonymous-xxxxxxxxxxxxxxxxx")); - sprintf(ret, "Anonymous-%d", anon_count++); + char *ret = malloc(40); + snprintf(ret, 40, "Anonymous-%d", anon_count++); return ret; } @@ -423,80 +266,408 @@ cod_dup_list(sm_list list) return ret_list; } +#line 270 "cod.tab.c" + +# ifndef YY_CAST +# ifdef __cplusplus +# define YY_CAST(Type, Val) static_cast (Val) +# define YY_REINTERPRET_CAST(Type, Val) reinterpret_cast (Val) +# else +# define YY_CAST(Type, Val) ((Type) (Val)) +# define YY_REINTERPRET_CAST(Type, Val) ((Type) (Val)) +# endif +# endif +# ifndef YY_NULLPTR +# if defined __cplusplus +# if 201103L <= __cplusplus +# define YY_NULLPTR nullptr +# else +# define YY_NULLPTR 0 +# endif +# else +# define YY_NULLPTR ((void*)0) +# endif +# endif + -/* Enabling traces. */ +/* Debug traces. */ #ifndef YYDEBUG # define YYDEBUG 0 #endif - -/* Enabling verbose error messages. */ -#ifdef YYERROR_VERBOSE -# undef YYERROR_VERBOSE -# define YYERROR_VERBOSE 1 -#else -# define YYERROR_VERBOSE 0 +#if YYDEBUG +extern int yydebug; #endif -/* Enabling the token table. */ -#ifndef YYTOKEN_TABLE -# define YYTOKEN_TABLE 0 +/* Token kinds. */ +#ifndef YYTOKENTYPE +# define YYTOKENTYPE + enum yytokentype + { + YYEMPTY = -2, + YYEOF = 0, /* "end of file" */ + YYerror = 256, /* error */ + YYUNDEF = 257, /* "invalid token" */ + ARROW = 258, /* ARROW */ + LPAREN = 259, /* LPAREN */ + RPAREN = 260, /* RPAREN */ + LCURLY = 261, /* LCURLY */ + RCURLY = 262, /* RCURLY */ + COLON = 263, /* COLON */ + QUESTION = 264, /* QUESTION */ + LBRACKET = 265, /* LBRACKET */ + RBRACKET = 266, /* RBRACKET */ + DOT = 267, /* DOT */ + STAR = 268, /* STAR */ + AT = 269, /* AT */ + SLASH = 270, /* SLASH */ + MODULUS = 271, /* MODULUS */ + PLUS = 272, /* PLUS */ + MINUS = 273, /* MINUS */ + TILDE = 274, /* TILDE */ + LEQ = 275, /* LEQ */ + LT = 276, /* LT */ + GEQ = 277, /* GEQ */ + GT = 278, /* GT */ + EQ = 279, /* EQ */ + NEQ = 280, /* NEQ */ + LEFT_SHIFT = 281, /* LEFT_SHIFT */ + RIGHT_SHIFT = 282, /* RIGHT_SHIFT */ + ASSIGN = 283, /* ASSIGN */ + MUL_ASSIGN = 284, /* MUL_ASSIGN */ + DIV_ASSIGN = 285, /* DIV_ASSIGN */ + MOD_ASSIGN = 286, /* MOD_ASSIGN */ + ADD_ASSIGN = 287, /* ADD_ASSIGN */ + SUB_ASSIGN = 288, /* SUB_ASSIGN */ + LEFT_ASSIGN = 289, /* LEFT_ASSIGN */ + RIGHT_ASSIGN = 290, /* RIGHT_ASSIGN */ + AND_ASSIGN = 291, /* AND_ASSIGN */ + XOR_ASSIGN = 292, /* XOR_ASSIGN */ + OR_ASSIGN = 293, /* OR_ASSIGN */ + LOG_OR = 294, /* LOG_OR */ + LOG_AND = 295, /* LOG_AND */ + ARITH_OR = 296, /* ARITH_OR */ + ARITH_AND = 297, /* ARITH_AND */ + ARITH_XOR = 298, /* ARITH_XOR */ + INC_OP = 299, /* INC_OP */ + DEC_OP = 300, /* DEC_OP */ + BANG = 301, /* BANG */ + SEMI = 302, /* SEMI */ + IF = 303, /* IF */ + ELSE = 304, /* ELSE */ + FOR = 305, /* FOR */ + DO = 306, /* DO */ + WHILE = 307, /* WHILE */ + CHAR = 308, /* CHAR */ + SHORT = 309, /* SHORT */ + INT = 310, /* INT */ + LONG = 311, /* LONG */ + UNSIGNED = 312, /* UNSIGNED */ + SIGNED = 313, /* SIGNED */ + FLOAT = 314, /* FLOAT */ + DOUBLE = 315, /* DOUBLE */ + VOID = 316, /* VOID */ + STRING = 317, /* STRING */ + STATIC = 318, /* STATIC */ + EXTERN_TOKEN = 319, /* EXTERN_TOKEN */ + STRUCT = 320, /* STRUCT */ + ENUM = 321, /* ENUM */ + UNION = 322, /* UNION */ + CONST = 323, /* CONST */ + SIZEOF = 324, /* SIZEOF */ + TYPEDEF = 325, /* TYPEDEF */ + RETURN_TOKEN = 326, /* RETURN_TOKEN */ + CONTINUE = 327, /* CONTINUE */ + BREAK = 328, /* BREAK */ + GOTO = 329, /* GOTO */ + PRINT = 330, /* PRINT */ + COMMA = 331, /* COMMA */ + DOTDOTDOT = 332, /* DOTDOTDOT */ + integer_constant = 333, /* integer_constant */ + character_constant = 334, /* character_constant */ + string_constant = 335, /* string_constant */ + floating_constant = 336, /* floating_constant */ + identifier_ref = 337, /* identifier_ref */ + type_id = 338, /* type_id */ + enumeration_constant = 339 /* enumeration_constant */ + }; + typedef enum yytokentype yytoken_kind_t; #endif +/* Value type. */ #if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED -typedef union YYSTYPE -#line 187 "cod/cod.y" +union YYSTYPE { +#line 201 "cod.y" + lx_info info; sm_ref reference; operator_t operator; sm_list list; char *string; -} -/* Line 193 of yacc.c. */ -#line 457 "/Users/eisen/prog/ffs/build/cod.tab.c" - YYSTYPE; -# define yystype YYSTYPE /* obsolescent; will be withdrawn */ -# define YYSTYPE_IS_DECLARED 1 + +#line 409 "cod.tab.c" + +}; +typedef union YYSTYPE YYSTYPE; # define YYSTYPE_IS_TRIVIAL 1 +# define YYSTYPE_IS_DECLARED 1 #endif +extern YYSTYPE yylval; + + +int yyparse (void); + + + +/* Symbol kind. */ +enum yysymbol_kind_t +{ + YYSYMBOL_YYEMPTY = -2, + YYSYMBOL_YYEOF = 0, /* "end of file" */ + YYSYMBOL_YYerror = 1, /* error */ + YYSYMBOL_YYUNDEF = 2, /* "invalid token" */ + YYSYMBOL_ARROW = 3, /* ARROW */ + YYSYMBOL_LPAREN = 4, /* LPAREN */ + YYSYMBOL_RPAREN = 5, /* RPAREN */ + YYSYMBOL_LCURLY = 6, /* LCURLY */ + YYSYMBOL_RCURLY = 7, /* RCURLY */ + YYSYMBOL_COLON = 8, /* COLON */ + YYSYMBOL_QUESTION = 9, /* QUESTION */ + YYSYMBOL_LBRACKET = 10, /* LBRACKET */ + YYSYMBOL_RBRACKET = 11, /* RBRACKET */ + YYSYMBOL_DOT = 12, /* DOT */ + YYSYMBOL_STAR = 13, /* STAR */ + YYSYMBOL_AT = 14, /* AT */ + YYSYMBOL_SLASH = 15, /* SLASH */ + YYSYMBOL_MODULUS = 16, /* MODULUS */ + YYSYMBOL_PLUS = 17, /* PLUS */ + YYSYMBOL_MINUS = 18, /* MINUS */ + YYSYMBOL_TILDE = 19, /* TILDE */ + YYSYMBOL_LEQ = 20, /* LEQ */ + YYSYMBOL_LT = 21, /* LT */ + YYSYMBOL_GEQ = 22, /* GEQ */ + YYSYMBOL_GT = 23, /* GT */ + YYSYMBOL_EQ = 24, /* EQ */ + YYSYMBOL_NEQ = 25, /* NEQ */ + YYSYMBOL_LEFT_SHIFT = 26, /* LEFT_SHIFT */ + YYSYMBOL_RIGHT_SHIFT = 27, /* RIGHT_SHIFT */ + YYSYMBOL_ASSIGN = 28, /* ASSIGN */ + YYSYMBOL_MUL_ASSIGN = 29, /* MUL_ASSIGN */ + YYSYMBOL_DIV_ASSIGN = 30, /* DIV_ASSIGN */ + YYSYMBOL_MOD_ASSIGN = 31, /* MOD_ASSIGN */ + YYSYMBOL_ADD_ASSIGN = 32, /* ADD_ASSIGN */ + YYSYMBOL_SUB_ASSIGN = 33, /* SUB_ASSIGN */ + YYSYMBOL_LEFT_ASSIGN = 34, /* LEFT_ASSIGN */ + YYSYMBOL_RIGHT_ASSIGN = 35, /* RIGHT_ASSIGN */ + YYSYMBOL_AND_ASSIGN = 36, /* AND_ASSIGN */ + YYSYMBOL_XOR_ASSIGN = 37, /* XOR_ASSIGN */ + YYSYMBOL_OR_ASSIGN = 38, /* OR_ASSIGN */ + YYSYMBOL_LOG_OR = 39, /* LOG_OR */ + YYSYMBOL_LOG_AND = 40, /* LOG_AND */ + YYSYMBOL_ARITH_OR = 41, /* ARITH_OR */ + YYSYMBOL_ARITH_AND = 42, /* ARITH_AND */ + YYSYMBOL_ARITH_XOR = 43, /* ARITH_XOR */ + YYSYMBOL_INC_OP = 44, /* INC_OP */ + YYSYMBOL_DEC_OP = 45, /* DEC_OP */ + YYSYMBOL_BANG = 46, /* BANG */ + YYSYMBOL_SEMI = 47, /* SEMI */ + YYSYMBOL_IF = 48, /* IF */ + YYSYMBOL_ELSE = 49, /* ELSE */ + YYSYMBOL_FOR = 50, /* FOR */ + YYSYMBOL_DO = 51, /* DO */ + YYSYMBOL_WHILE = 52, /* WHILE */ + YYSYMBOL_CHAR = 53, /* CHAR */ + YYSYMBOL_SHORT = 54, /* SHORT */ + YYSYMBOL_INT = 55, /* INT */ + YYSYMBOL_LONG = 56, /* LONG */ + YYSYMBOL_UNSIGNED = 57, /* UNSIGNED */ + YYSYMBOL_SIGNED = 58, /* SIGNED */ + YYSYMBOL_FLOAT = 59, /* FLOAT */ + YYSYMBOL_DOUBLE = 60, /* DOUBLE */ + YYSYMBOL_VOID = 61, /* VOID */ + YYSYMBOL_STRING = 62, /* STRING */ + YYSYMBOL_STATIC = 63, /* STATIC */ + YYSYMBOL_EXTERN_TOKEN = 64, /* EXTERN_TOKEN */ + YYSYMBOL_STRUCT = 65, /* STRUCT */ + YYSYMBOL_ENUM = 66, /* ENUM */ + YYSYMBOL_UNION = 67, /* UNION */ + YYSYMBOL_CONST = 68, /* CONST */ + YYSYMBOL_SIZEOF = 69, /* SIZEOF */ + YYSYMBOL_TYPEDEF = 70, /* TYPEDEF */ + YYSYMBOL_RETURN_TOKEN = 71, /* RETURN_TOKEN */ + YYSYMBOL_CONTINUE = 72, /* CONTINUE */ + YYSYMBOL_BREAK = 73, /* BREAK */ + YYSYMBOL_GOTO = 74, /* GOTO */ + YYSYMBOL_PRINT = 75, /* PRINT */ + YYSYMBOL_COMMA = 76, /* COMMA */ + YYSYMBOL_DOTDOTDOT = 77, /* DOTDOTDOT */ + YYSYMBOL_integer_constant = 78, /* integer_constant */ + YYSYMBOL_character_constant = 79, /* character_constant */ + YYSYMBOL_string_constant = 80, /* string_constant */ + YYSYMBOL_floating_constant = 81, /* floating_constant */ + YYSYMBOL_identifier_ref = 82, /* identifier_ref */ + YYSYMBOL_type_id = 83, /* type_id */ + YYSYMBOL_enumeration_constant = 84, /* enumeration_constant */ + YYSYMBOL_YYACCEPT = 85, /* $accept */ + YYSYMBOL_start = 86, /* start */ + YYSYMBOL_primary_expression = 87, /* primary_expression */ + YYSYMBOL_postfix_expression = 88, /* postfix_expression */ + YYSYMBOL_argument_expression_list = 89, /* argument_expression_list */ + YYSYMBOL_unary_expression = 90, /* unary_expression */ + YYSYMBOL_unary_operator = 91, /* unary_operator */ + YYSYMBOL_cast_expression = 92, /* cast_expression */ + YYSYMBOL_multiplicative_expression = 93, /* multiplicative_expression */ + YYSYMBOL_additive_expression = 94, /* additive_expression */ + YYSYMBOL_shift_expression = 95, /* shift_expression */ + YYSYMBOL_relational_expression = 96, /* relational_expression */ + YYSYMBOL_equality_expression = 97, /* equality_expression */ + YYSYMBOL_and_expression = 98, /* and_expression */ + YYSYMBOL_exclusive_or_expression = 99, /* exclusive_or_expression */ + YYSYMBOL_inclusive_or_expression = 100, /* inclusive_or_expression */ + YYSYMBOL_logical_and_expression = 101, /* logical_and_expression */ + YYSYMBOL_logical_or_expression = 102, /* logical_or_expression */ + YYSYMBOL_conditional_expression = 103, /* conditional_expression */ + YYSYMBOL_assignment_operator = 104, /* assignment_operator */ + YYSYMBOL_assignment_expression = 105, /* assignment_expression */ + YYSYMBOL_expression = 106, /* expression */ + YYSYMBOL_constant_expression = 107, /* constant_expression */ + YYSYMBOL_init_declarator_list = 108, /* init_declarator_list */ + YYSYMBOL_declaration = 109, /* declaration */ + YYSYMBOL_110_1 = 110, /* $@1 */ + YYSYMBOL_111_2 = 111, /* @2 */ + YYSYMBOL_declaration_specifiers = 112, /* declaration_specifiers */ + YYSYMBOL_init_declarator = 113, /* init_declarator */ + YYSYMBOL_storage_class_specifier = 114, /* storage_class_specifier */ + YYSYMBOL_type_specifier = 115, /* type_specifier */ + YYSYMBOL_struct_or_union_specifier = 116, /* struct_or_union_specifier */ + YYSYMBOL_struct_or_union = 117, /* struct_or_union */ + YYSYMBOL_struct_declaration_list = 118, /* struct_declaration_list */ + YYSYMBOL_struct_declaration = 119, /* struct_declaration */ + YYSYMBOL_struct_declarator_list = 120, /* struct_declarator_list */ + YYSYMBOL_struct_declarator = 121, /* struct_declarator */ + YYSYMBOL_specifier_qualifier_list = 122, /* specifier_qualifier_list */ + YYSYMBOL_enum_specifier = 123, /* enum_specifier */ + YYSYMBOL_enumerator_list = 124, /* enumerator_list */ + YYSYMBOL_enumerator = 125, /* enumerator */ + YYSYMBOL_type_qualifier = 126, /* type_qualifier */ + YYSYMBOL_declarator = 127, /* declarator */ + YYSYMBOL_direct_declarator = 128, /* direct_declarator */ + YYSYMBOL_pointer = 129, /* pointer */ + YYSYMBOL_type_qualifier_list = 130, /* type_qualifier_list */ + YYSYMBOL_parameter_type_list = 131, /* parameter_type_list */ + YYSYMBOL_parameter_list = 132, /* parameter_list */ + YYSYMBOL_parameter_declaration = 133, /* parameter_declaration */ + YYSYMBOL_type_name = 134, /* type_name */ + YYSYMBOL_abstract_declarator = 135, /* abstract_declarator */ + YYSYMBOL_initializer = 136, /* initializer */ + YYSYMBOL_initializer_list = 137, /* initializer_list */ + YYSYMBOL_designation = 138, /* designation */ + YYSYMBOL_designator_list = 139, /* designator_list */ + YYSYMBOL_designator = 140, /* designator */ + YYSYMBOL_decls_stmts_list = 141, /* decls_stmts_list */ + YYSYMBOL_statement = 142, /* statement */ + YYSYMBOL_labeled_statement = 143, /* labeled_statement */ + YYSYMBOL_compound_statement = 144, /* compound_statement */ + YYSYMBOL_declaration_list = 145, /* declaration_list */ + YYSYMBOL_jump_statement = 146, /* jump_statement */ + YYSYMBOL_expression_statement = 147, /* expression_statement */ + YYSYMBOL_selection_statement = 148, /* selection_statement */ + YYSYMBOL_iteration_statement = 149, /* iteration_statement */ + YYSYMBOL_expression_opt = 150, /* expression_opt */ + YYSYMBOL_constant = 151 /* constant */ +}; +typedef enum yysymbol_kind_t yysymbol_kind_t; -/* Copy the second part of user declarations. */ -/* Line 216 of yacc.c. */ -#line 470 "/Users/eisen/prog/ffs/build/cod.tab.c" #ifdef short # undef short #endif -#ifdef YYTYPE_UINT8 -typedef YYTYPE_UINT8 yytype_uint8; -#else -typedef unsigned char yytype_uint8; +/* On compilers that do not define __PTRDIFF_MAX__ etc., make sure + and (if available) are included + so that the code can choose integer types of a good width. */ + +#ifndef __PTRDIFF_MAX__ +# include /* INFRINGES ON USER NAME SPACE */ +# if defined __STDC_VERSION__ && 199901 <= __STDC_VERSION__ +# include /* INFRINGES ON USER NAME SPACE */ +# define YY_STDINT_H +# endif #endif -#ifdef YYTYPE_INT8 -typedef YYTYPE_INT8 yytype_int8; -#elif (defined __STDC__ || defined __C99__FUNC__ \ - || defined __cplusplus || defined _MSC_VER) +/* Narrow types that promote to a signed type and that can represent a + signed or unsigned integer of at least N bits. In tables they can + save space and decrease cache pressure. Promoting to a signed type + helps avoid bugs in integer arithmetic. */ + +#ifdef __INT_LEAST8_MAX__ +typedef __INT_LEAST8_TYPE__ yytype_int8; +#elif defined YY_STDINT_H +typedef int_least8_t yytype_int8; +#else typedef signed char yytype_int8; +#endif + +#ifdef __INT_LEAST16_MAX__ +typedef __INT_LEAST16_TYPE__ yytype_int16; +#elif defined YY_STDINT_H +typedef int_least16_t yytype_int16; #else -typedef short int yytype_int8; +typedef short yytype_int16; +#endif + +/* Work around bug in HP-UX 11.23, which defines these macros + incorrectly for preprocessor constants. This workaround can likely + be removed in 2023, as HPE has promised support for HP-UX 11.23 + (aka HP-UX 11i v2) only through the end of 2022; see Table 2 of + . */ +#ifdef __hpux +# undef UINT_LEAST8_MAX +# undef UINT_LEAST16_MAX +# define UINT_LEAST8_MAX 255 +# define UINT_LEAST16_MAX 65535 #endif -#ifdef YYTYPE_UINT16 -typedef YYTYPE_UINT16 yytype_uint16; +#if defined __UINT_LEAST8_MAX__ && __UINT_LEAST8_MAX__ <= __INT_MAX__ +typedef __UINT_LEAST8_TYPE__ yytype_uint8; +#elif (!defined __UINT_LEAST8_MAX__ && defined YY_STDINT_H \ + && UINT_LEAST8_MAX <= INT_MAX) +typedef uint_least8_t yytype_uint8; +#elif !defined __UINT_LEAST8_MAX__ && UCHAR_MAX <= INT_MAX +typedef unsigned char yytype_uint8; #else -typedef unsigned short int yytype_uint16; +typedef short yytype_uint8; #endif -#ifdef YYTYPE_INT16 -typedef YYTYPE_INT16 yytype_int16; +#if defined __UINT_LEAST16_MAX__ && __UINT_LEAST16_MAX__ <= __INT_MAX__ +typedef __UINT_LEAST16_TYPE__ yytype_uint16; +#elif (!defined __UINT_LEAST16_MAX__ && defined YY_STDINT_H \ + && UINT_LEAST16_MAX <= INT_MAX) +typedef uint_least16_t yytype_uint16; +#elif !defined __UINT_LEAST16_MAX__ && USHRT_MAX <= INT_MAX +typedef unsigned short yytype_uint16; #else -typedef short int yytype_int16; +typedef int yytype_uint16; +#endif + +#ifndef YYPTRDIFF_T +# if defined __PTRDIFF_TYPE__ && defined __PTRDIFF_MAX__ +# define YYPTRDIFF_T __PTRDIFF_TYPE__ +# define YYPTRDIFF_MAXIMUM __PTRDIFF_MAX__ +# elif defined PTRDIFF_MAX +# ifndef ptrdiff_t +# include /* INFRINGES ON USER NAME SPACE */ +# endif +# define YYPTRDIFF_T ptrdiff_t +# define YYPTRDIFF_MAXIMUM PTRDIFF_MAX +# else +# define YYPTRDIFF_T long +# define YYPTRDIFF_MAXIMUM LONG_MAX +# endif #endif #ifndef YYSIZE_T @@ -504,55 +675,106 @@ typedef short int yytype_int16; # define YYSIZE_T __SIZE_TYPE__ # elif defined size_t # define YYSIZE_T size_t -# elif ! defined YYSIZE_T && (defined __STDC__ || defined __C99__FUNC__ \ - || defined __cplusplus || defined _MSC_VER) +# elif defined __STDC_VERSION__ && 199901 <= __STDC_VERSION__ # include /* INFRINGES ON USER NAME SPACE */ # define YYSIZE_T size_t # else -# define YYSIZE_T unsigned int +# define YYSIZE_T unsigned # endif #endif -#define YYSIZE_MAXIMUM ((YYSIZE_T) -1) +#define YYSIZE_MAXIMUM \ + YY_CAST (YYPTRDIFF_T, \ + (YYPTRDIFF_MAXIMUM < YY_CAST (YYSIZE_T, -1) \ + ? YYPTRDIFF_MAXIMUM \ + : YY_CAST (YYSIZE_T, -1))) + +#define YYSIZEOF(X) YY_CAST (YYPTRDIFF_T, sizeof (X)) + + +/* Stored state numbers (used for stacks). */ +typedef yytype_int16 yy_state_t; + +/* State numbers in computations. */ +typedef int yy_state_fast_t; #ifndef YY_ # if defined YYENABLE_NLS && YYENABLE_NLS # if ENABLE_NLS # include /* INFRINGES ON USER NAME SPACE */ -# define YY_(msgid) dgettext ("bison-runtime", msgid) +# define YY_(Msgid) dgettext ("bison-runtime", Msgid) # endif # endif # ifndef YY_ -# define YY_(msgid) msgid +# define YY_(Msgid) Msgid +# endif +#endif + + +#ifndef YY_ATTRIBUTE_PURE +# if defined __GNUC__ && 2 < __GNUC__ + (96 <= __GNUC_MINOR__) +# define YY_ATTRIBUTE_PURE __attribute__ ((__pure__)) +# else +# define YY_ATTRIBUTE_PURE +# endif +#endif + +#ifndef YY_ATTRIBUTE_UNUSED +# if defined __GNUC__ && 2 < __GNUC__ + (7 <= __GNUC_MINOR__) +# define YY_ATTRIBUTE_UNUSED __attribute__ ((__unused__)) +# else +# define YY_ATTRIBUTE_UNUSED # endif #endif /* Suppress unused-variable warnings by "using" E. */ #if ! defined lint || defined __GNUC__ -# define YYUSE(e) ((void) (e)) +# define YY_USE(E) ((void) (E)) #else -# define YYUSE(e) /* empty */ +# define YY_USE(E) /* empty */ #endif -/* Identity function, used to suppress warnings about constant conditions. */ -#ifndef lint -# define YYID(n) (n) -#else -#if (defined __STDC__ || defined __C99__FUNC__ \ - || defined __cplusplus || defined _MSC_VER) -static int -YYID (int i) +/* Suppress an incorrect diagnostic about yylval being uninitialized. */ +#if defined __GNUC__ && ! defined __ICC && 406 <= __GNUC__ * 100 + __GNUC_MINOR__ +# if __GNUC__ * 100 + __GNUC_MINOR__ < 407 +# define YY_IGNORE_MAYBE_UNINITIALIZED_BEGIN \ + _Pragma ("GCC diagnostic push") \ + _Pragma ("GCC diagnostic ignored \"-Wuninitialized\"") +# else +# define YY_IGNORE_MAYBE_UNINITIALIZED_BEGIN \ + _Pragma ("GCC diagnostic push") \ + _Pragma ("GCC diagnostic ignored \"-Wuninitialized\"") \ + _Pragma ("GCC diagnostic ignored \"-Wmaybe-uninitialized\"") +# endif +# define YY_IGNORE_MAYBE_UNINITIALIZED_END \ + _Pragma ("GCC diagnostic pop") #else -static int -YYID (i) - int i; +# define YY_INITIAL_VALUE(Value) Value #endif -{ - return i; -} +#ifndef YY_IGNORE_MAYBE_UNINITIALIZED_BEGIN +# define YY_IGNORE_MAYBE_UNINITIALIZED_BEGIN +# define YY_IGNORE_MAYBE_UNINITIALIZED_END +#endif +#ifndef YY_INITIAL_VALUE +# define YY_INITIAL_VALUE(Value) /* Nothing. */ +#endif + +#if defined __cplusplus && defined __GNUC__ && ! defined __ICC && 6 <= __GNUC__ +# define YY_IGNORE_USELESS_CAST_BEGIN \ + _Pragma ("GCC diagnostic push") \ + _Pragma ("GCC diagnostic ignored \"-Wuseless-cast\"") +# define YY_IGNORE_USELESS_CAST_END \ + _Pragma ("GCC diagnostic pop") +#endif +#ifndef YY_IGNORE_USELESS_CAST_BEGIN +# define YY_IGNORE_USELESS_CAST_BEGIN +# define YY_IGNORE_USELESS_CAST_END #endif -#if ! defined yyoverflow || YYERROR_VERBOSE + +#define YY_ASSERT(E) ((void) (0 && (E))) + +#if !defined yyoverflow /* The parser invokes alloca or malloc; define the necessary symbols. */ @@ -569,11 +791,11 @@ YYID (i) # define alloca _alloca # else # define YYSTACK_ALLOC alloca -# if ! defined _ALLOCA_H && ! defined _STDLIB_H && (defined __STDC__ || defined __C99__FUNC__ \ - || defined __cplusplus || defined _MSC_VER) +# if ! defined _ALLOCA_H && ! defined EXIT_SUCCESS # include /* INFRINGES ON USER NAME SPACE */ -# ifndef _STDLIB_H -# define _STDLIB_H 1 + /* Use EXIT_SUCCESS as a witness for stdlib.h. */ +# ifndef EXIT_SUCCESS +# define EXIT_SUCCESS 0 # endif # endif # endif @@ -581,8 +803,8 @@ YYID (i) # endif # ifdef YYSTACK_ALLOC - /* Pacify GCC's `empty if-body' warning. */ -# define YYSTACK_FREE(Ptr) do { /* empty */; } while (YYID (0)) + /* Pacify GCC's 'empty if-body' warning. */ +# define YYSTACK_FREE(Ptr) do { /* empty */; } while (0) # ifndef YYSTACK_ALLOC_MAXIMUM /* The OS might guarantee only one guard page at the bottom of the stack, and a page size can be as small as 4096 bytes. So we cannot safely @@ -596,88 +818,89 @@ YYID (i) # ifndef YYSTACK_ALLOC_MAXIMUM # define YYSTACK_ALLOC_MAXIMUM YYSIZE_MAXIMUM # endif -# if (defined __cplusplus && ! defined _STDLIB_H \ +# if (defined __cplusplus && ! defined EXIT_SUCCESS \ && ! ((defined YYMALLOC || defined malloc) \ - && (defined YYFREE || defined free))) + && (defined YYFREE || defined free))) # include /* INFRINGES ON USER NAME SPACE */ -# ifndef _STDLIB_H -# define _STDLIB_H 1 +# ifndef EXIT_SUCCESS +# define EXIT_SUCCESS 0 # endif # endif # ifndef YYMALLOC # define YYMALLOC malloc -# if ! defined malloc && ! defined _STDLIB_H && (defined __STDC__ || defined __C99__FUNC__ \ - || defined __cplusplus || defined _MSC_VER) +# if ! defined malloc && ! defined EXIT_SUCCESS void *malloc (YYSIZE_T); /* INFRINGES ON USER NAME SPACE */ # endif # endif # ifndef YYFREE # define YYFREE free -# if ! defined free && ! defined _STDLIB_H && (defined __STDC__ || defined __C99__FUNC__ \ - || defined __cplusplus || defined _MSC_VER) +# if ! defined free && ! defined EXIT_SUCCESS void free (void *); /* INFRINGES ON USER NAME SPACE */ # endif # endif # endif -#endif /* ! defined yyoverflow || YYERROR_VERBOSE */ - +#endif /* !defined yyoverflow */ #if (! defined yyoverflow \ && (! defined __cplusplus \ - || (defined YYSTYPE_IS_TRIVIAL && YYSTYPE_IS_TRIVIAL))) + || (defined YYSTYPE_IS_TRIVIAL && YYSTYPE_IS_TRIVIAL))) /* A type that is properly aligned for any stack member. */ union yyalloc { - yytype_int16 yyss; - YYSTYPE yyvs; - }; + yy_state_t yyss_alloc; + YYSTYPE yyvs_alloc; +}; /* The size of the maximum gap between one aligned stack and the next. */ -# define YYSTACK_GAP_MAXIMUM (sizeof (union yyalloc) - 1) +# define YYSTACK_GAP_MAXIMUM (YYSIZEOF (union yyalloc) - 1) /* The size of an array large to enough to hold all stacks, each with N elements. */ # define YYSTACK_BYTES(N) \ - ((N) * (sizeof (yytype_int16) + sizeof (YYSTYPE)) \ + ((N) * (YYSIZEOF (yy_state_t) + YYSIZEOF (YYSTYPE)) \ + YYSTACK_GAP_MAXIMUM) -/* Copy COUNT objects from FROM to TO. The source and destination do - not overlap. */ -# ifndef YYCOPY -# if defined __GNUC__ && 1 < __GNUC__ -# define YYCOPY(To, From, Count) \ - __builtin_memcpy (To, From, (Count) * sizeof (*(From))) -# else -# define YYCOPY(To, From, Count) \ - do \ - { \ - YYSIZE_T yyi; \ - for (yyi = 0; yyi < (Count); yyi++) \ - (To)[yyi] = (From)[yyi]; \ - } \ - while (YYID (0)) -# endif -# endif +# define YYCOPY_NEEDED 1 /* Relocate STACK from its old location to the new one. The local variables YYSIZE and YYSTACKSIZE give the old and new number of elements in the stack, and YYPTR gives the new location of the stack. Advance YYPTR to a properly aligned location for the next stack. */ -# define YYSTACK_RELOCATE(Stack) \ - do \ - { \ - YYSIZE_T yynewbytes; \ - YYCOPY (&yyptr->Stack, Stack, yysize); \ - Stack = &yyptr->Stack; \ - yynewbytes = yystacksize * sizeof (*Stack) + YYSTACK_GAP_MAXIMUM; \ - yyptr += yynewbytes / sizeof (*yyptr); \ - } \ - while (YYID (0)) +# define YYSTACK_RELOCATE(Stack_alloc, Stack) \ + do \ + { \ + YYPTRDIFF_T yynewbytes; \ + YYCOPY (&yyptr->Stack_alloc, Stack, yysize); \ + Stack = &yyptr->Stack_alloc; \ + yynewbytes = yystacksize * YYSIZEOF (*Stack) + YYSTACK_GAP_MAXIMUM; \ + yyptr += yynewbytes / YYSIZEOF (*yyptr); \ + } \ + while (0) #endif +#if defined YYCOPY_NEEDED && YYCOPY_NEEDED +/* Copy COUNT objects from SRC to DST. The source and destination do + not overlap. */ +# ifndef YYCOPY +# if defined __GNUC__ && 1 < __GNUC__ +# define YYCOPY(Dst, Src, Count) \ + __builtin_memcpy (Dst, Src, YY_CAST (YYSIZE_T, (Count)) * sizeof (*(Src))) +# else +# define YYCOPY(Dst, Src, Count) \ + do \ + { \ + YYPTRDIFF_T yyi; \ + for (yyi = 0; yyi < (Count); yyi++) \ + (Dst)[yyi] = (Src)[yyi]; \ + } \ + while (0) +# endif +# endif +#endif /* !YYCOPY_NEEDED */ + /* YYFINAL -- State number of the termination state. */ #define YYFINAL 88 /* YYLAST -- Last index in YYTABLE. */ @@ -689,18 +912,23 @@ union yyalloc #define YYNNTS 67 /* YYNRULES -- Number of rules. */ #define YYNRULES 206 -/* YYNRULES -- Number of states. */ +/* YYNSTATES -- Number of states. */ #define YYNSTATES 321 -/* YYTRANSLATE(YYLEX) -- Bison symbol number corresponding to YYLEX. */ -#define YYUNDEFTOK 2 +/* YYMAXUTOK -- Last valid token kind. */ #define YYMAXUTOK 339 -#define YYTRANSLATE(YYX) \ - ((unsigned int) (YYX) <= YYMAXUTOK ? yytranslate[YYX] : YYUNDEFTOK) -/* YYTRANSLATE[YYLEX] -- Bison symbol number corresponding to YYLEX. */ -static const yytype_uint8 yytranslate[] = +/* YYTRANSLATE(TOKEN-NUM) -- Symbol number corresponding to TOKEN-NUM + as returned by yylex, with out-of-bounds checking. */ +#define YYTRANSLATE(YYX) \ + (0 <= (YYX) && (YYX) <= YYMAXUTOK \ + ? YY_CAST (yysymbol_kind_t, yytranslate[YYX]) \ + : YYSYMBOL_YYUNDEF) + +/* YYTRANSLATE[TOKEN-NUM] -- Symbol number corresponding to TOKEN-NUM + as returned by yylex. */ +static const yytype_int8 yytranslate[] = { 0, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, @@ -739,144 +967,58 @@ static const yytype_uint8 yytranslate[] = }; #if YYDEBUG -/* YYPRHS[YYN] -- Index of the first RHS symbol of rule number YYN in - YYRHS. */ -static const yytype_uint16 yyprhs[] = -{ - 0, 0, 3, 5, 7, 9, 11, 15, 17, 22, - 26, 31, 35, 39, 42, 45, 47, 51, 53, 56, - 59, 62, 65, 70, 72, 74, 76, 78, 80, 82, - 84, 89, 91, 95, 99, 103, 105, 109, 113, 115, - 119, 123, 125, 129, 133, 137, 141, 143, 147, 151, - 153, 157, 159, 163, 165, 169, 171, 175, 177, 181, - 183, 189, 191, 193, 195, 197, 199, 201, 203, 205, - 207, 209, 211, 213, 217, 219, 223, 225, 227, 231, - 232, 233, 239, 242, 244, 247, 249, 252, 254, 257, - 259, 263, 265, 267, 269, 271, 273, 275, 277, 279, - 281, 283, 285, 287, 289, 291, 293, 295, 301, 306, - 309, 311, 313, 315, 318, 321, 325, 327, 331, 333, - 336, 338, 341, 343, 348, 354, 360, 367, 370, 372, - 376, 380, 382, 384, 386, 389, 391, 395, 400, 404, - 409, 413, 415, 418, 421, 425, 427, 430, 433, 437, - 439, 442, 444, 448, 450, 454, 456, 459, 461, 464, - 466, 470, 475, 477, 480, 482, 487, 491, 494, 496, - 499, 503, 506, 508, 510, 513, 516, 519, 521, 523, - 525, 527, 529, 531, 535, 538, 542, 544, 547, 551, - 554, 557, 560, 564, 566, 569, 575, 583, 593, 599, - 607, 608, 610, 612, 614, 616, 618 +/* YYRLINE[YYN] -- Source line where rule number YYN was defined. */ +static const yytype_int16 yyrline[] = +{ + 0, 358, 358, 362, 368, 374, 376, 383, 385, 392, + 399, 406, 412, 418, 425, 435, 441, 455, 456, 463, + 470, 477, 484, 499, 502, 505, 508, 511, 514, 520, + 521, 530, 532, 541, 550, 561, 563, 572, 583, 585, + 594, 605, 607, 616, 625, 634, 645, 647, 656, 667, + 669, 680, 682, 693, 695, 706, 708, 719, 721, 732, + 734, 745, 747, 749, 751, 753, 755, 757, 759, 761, + 763, 765, 770, 773, 784, 786, 796, 800, 805, 824, + 831, 823, 914, 920, 925, 931, 936, 942, 947, 955, + 957, 973, 978, 983, 992, 997, 1002, 1007, 1012, 1017, + 1022, 1027, 1032, 1037, 1042, 1047, 1050, 1056, 1059, 1062, + 1068, 1069, 1075, 1076, 1088, 1089, 1140, 1145, 1157, 1160, + 1166, 1171, 1177, 1185, 1192, 1199, 1206, 1213, 1223, 1229, + 1239, 1245, 1253, 1261, 1263, 1277, 1286, 1289, 1298, 1307, + 1314, 1324, 1332, 1340, 1348, 1362, 1373, 1384, 1395, 1415, + 1420, 1433, 1434, 1449, 1455, 1470, 1479, 1518, 1519, 1565, + 1569, 1574, 1579, 1584, 1592, 1600, 1613, 1629, 1634, 1639, + 1652, 1658, 1667, 1673, 1676, 1679, 1685, 1690, 1691, 1692, + 1693, 1694, 1695, 1702, 1709, 1712, 1720, 1722, 1736, 1741, + 1746, 1752, 1758, 1767, 1771, 1781, 1790, 1807, 1817, 1827, + 1841, 1843, 1846, 1853, 1860, 1867, 1874 }; +#endif -/* YYRHS -- A `-1'-separated list of the rules' RHS. */ -static const yytype_int16 yyrhs[] = -{ - 86, 0, -1, 145, -1, 144, -1, 82, -1, 151, - -1, 4, 106, 5, -1, 87, -1, 88, 10, 106, - 11, -1, 88, 12, 82, -1, 88, 4, 89, 5, - -1, 88, 4, 5, -1, 88, 3, 82, -1, 88, - 44, -1, 88, 45, -1, 105, -1, 89, 76, 105, - -1, 88, -1, 44, 90, -1, 45, 90, -1, 91, - 92, -1, 69, 90, -1, 69, 4, 134, 5, -1, - 42, -1, 13, -1, 17, -1, 18, -1, 19, -1, - 46, -1, 90, -1, 4, 134, 5, 92, -1, 92, - -1, 93, 13, 92, -1, 93, 15, 92, -1, 93, - 16, 92, -1, 93, -1, 94, 17, 93, -1, 94, - 18, 93, -1, 94, -1, 95, 26, 94, -1, 95, - 27, 94, -1, 95, -1, 96, 21, 95, -1, 96, - 23, 95, -1, 96, 20, 95, -1, 96, 22, 95, - -1, 96, -1, 97, 24, 96, -1, 97, 25, 96, - -1, 97, -1, 98, 42, 97, -1, 98, -1, 99, - 43, 98, -1, 99, -1, 100, 41, 99, -1, 100, - -1, 101, 40, 100, -1, 101, -1, 102, 39, 101, - -1, 102, -1, 102, 9, 106, 8, 103, -1, 28, - -1, 29, -1, 30, -1, 31, -1, 32, -1, 33, - -1, 34, -1, 35, -1, 36, -1, 37, -1, 38, - -1, 103, -1, 90, 104, 105, -1, 105, -1, 106, - 76, 105, -1, 103, -1, 113, -1, 108, 76, 113, - -1, -1, -1, 112, 110, 108, 111, 47, -1, 112, - 47, -1, 114, -1, 114, 112, -1, 115, -1, 115, - 112, -1, 126, -1, 126, 112, -1, 127, -1, 127, - 28, 136, -1, 70, -1, 63, -1, 64, -1, 53, - -1, 54, -1, 55, -1, 56, -1, 59, -1, 60, - -1, 61, -1, 58, -1, 57, -1, 62, -1, 83, - -1, 116, -1, 123, -1, 117, 82, 6, 118, 7, - -1, 117, 6, 118, 7, -1, 117, 82, -1, 65, - -1, 67, -1, 119, -1, 118, 119, -1, 122, 47, - -1, 122, 120, 47, -1, 121, -1, 120, 76, 121, - -1, 127, -1, 115, 122, -1, 115, -1, 126, 122, - -1, 126, -1, 66, 6, 124, 7, -1, 66, 6, - 124, 76, 7, -1, 66, 82, 6, 124, 7, -1, - 66, 82, 6, 124, 76, 7, -1, 66, 82, -1, - 125, -1, 124, 76, 125, -1, 82, 28, 107, -1, - 82, -1, 68, -1, 128, -1, 129, 128, -1, 82, - -1, 4, 127, 5, -1, 82, 4, 131, 5, -1, - 82, 4, 5, -1, 128, 10, 107, 11, -1, 128, - 10, 11, -1, 13, -1, 13, 130, -1, 13, 129, - -1, 13, 130, 129, -1, 14, -1, 14, 130, -1, - 14, 129, -1, 14, 130, 129, -1, 126, -1, 130, - 126, -1, 132, -1, 132, 76, 77, -1, 133, -1, - 132, 76, 133, -1, 112, -1, 112, 127, -1, 122, - -1, 122, 135, -1, 129, -1, 6, 137, 7, -1, - 6, 137, 76, 7, -1, 105, -1, 138, 136, -1, - 136, -1, 137, 76, 138, 136, -1, 137, 76, 136, - -1, 139, 28, -1, 140, -1, 139, 140, -1, 10, - 107, 11, -1, 12, 82, -1, 142, -1, 109, -1, - 1, 47, -1, 141, 142, -1, 141, 109, -1, 143, - -1, 144, -1, 147, -1, 148, -1, 149, -1, 146, - -1, 82, 8, 142, -1, 6, 7, -1, 6, 141, - 7, -1, 109, -1, 145, 109, -1, 71, 106, 47, - -1, 71, 47, -1, 72, 47, -1, 73, 47, -1, - 74, 82, 47, -1, 47, -1, 106, 47, -1, 48, - 4, 106, 5, 142, -1, 48, 4, 106, 5, 142, - 49, 142, -1, 50, 4, 150, 47, 150, 47, 150, - 5, 142, -1, 52, 4, 106, 5, 142, -1, 51, - 142, 52, 4, 106, 5, 47, -1, -1, 106, -1, - 78, -1, 81, -1, 80, -1, 79, -1, 84, -1 -}; +/** Accessing symbol of state STATE. */ +#define YY_ACCESSING_SYMBOL(State) YY_CAST (yysymbol_kind_t, yystos[State]) -/* YYRLINE[YYN] -- source line where rule number YYN was defined. */ -static const yytype_uint16 yyrline[] = -{ - 0, 344, 344, 348, 354, 360, 362, 369, 371, 378, - 385, 392, 398, 404, 411, 421, 427, 441, 442, 449, - 456, 463, 470, 485, 488, 491, 494, 497, 500, 506, - 507, 516, 518, 527, 536, 547, 549, 558, 569, 571, - 580, 591, 593, 602, 611, 620, 631, 633, 642, 653, - 655, 666, 668, 679, 681, 692, 694, 705, 707, 718, - 720, 731, 733, 735, 737, 739, 741, 743, 745, 747, - 749, 751, 756, 759, 770, 772, 782, 786, 791, 810, - 817, 809, 900, 906, 911, 917, 922, 928, 933, 941, - 943, 959, 964, 969, 978, 983, 988, 993, 998, 1003, - 1008, 1013, 1018, 1023, 1028, 1033, 1036, 1042, 1045, 1048, - 1054, 1055, 1061, 1062, 1074, 1075, 1126, 1131, 1143, 1146, - 1152, 1157, 1163, 1171, 1178, 1185, 1192, 1199, 1209, 1215, - 1225, 1231, 1239, 1247, 1249, 1263, 1272, 1275, 1284, 1293, - 1300, 1310, 1318, 1326, 1334, 1348, 1359, 1370, 1381, 1401, - 1406, 1419, 1420, 1435, 1441, 1456, 1465, 1504, 1505, 1551, - 1555, 1560, 1565, 1570, 1578, 1586, 1599, 1615, 1620, 1625, - 1638, 1644, 1653, 1659, 1662, 1665, 1671, 1676, 1677, 1678, - 1679, 1680, 1681, 1688, 1695, 1698, 1706, 1708, 1722, 1727, - 1732, 1738, 1744, 1753, 1757, 1767, 1776, 1793, 1803, 1813, - 1827, 1829, 1832, 1839, 1846, 1853, 1860 -}; -#endif +#if YYDEBUG || 0 +/* The user-facing name of the symbol whose (internal) number is + YYSYMBOL. No bounds checking. */ +static const char *yysymbol_name (yysymbol_kind_t yysymbol) YY_ATTRIBUTE_UNUSED; -#if YYDEBUG || YYERROR_VERBOSE || YYTOKEN_TABLE /* YYTNAME[SYMBOL-NUM] -- String name of the symbol SYMBOL-NUM. First, the terminals, then, starting at YYNTOKENS, nonterminals. */ static const char *const yytname[] = { - "$end", "error", "$undefined", "ARROW", "LPAREN", "RPAREN", "LCURLY", - "RCURLY", "COLON", "QUESTION", "LBRACKET", "RBRACKET", "DOT", "STAR", - "AT", "SLASH", "MODULUS", "PLUS", "MINUS", "TILDE", "LEQ", "LT", "GEQ", - "GT", "EQ", "NEQ", "LEFT_SHIFT", "RIGHT_SHIFT", "ASSIGN", "MUL_ASSIGN", - "DIV_ASSIGN", "MOD_ASSIGN", "ADD_ASSIGN", "SUB_ASSIGN", "LEFT_ASSIGN", - "RIGHT_ASSIGN", "AND_ASSIGN", "XOR_ASSIGN", "OR_ASSIGN", "LOG_OR", - "LOG_AND", "ARITH_OR", "ARITH_AND", "ARITH_XOR", "INC_OP", "DEC_OP", - "BANG", "SEMI", "IF", "ELSE", "FOR", "DO", "WHILE", "CHAR", "SHORT", - "INT", "LONG", "UNSIGNED", "SIGNED", "FLOAT", "DOUBLE", "VOID", "STRING", - "STATIC", "EXTERN_TOKEN", "STRUCT", "ENUM", "UNION", "CONST", "SIZEOF", - "TYPEDEF", "RETURN_TOKEN", "CONTINUE", "BREAK", "GOTO", "PRINT", "COMMA", - "DOTDOTDOT", "integer_constant", "character_constant", "string_constant", + "\"end of file\"", "error", "\"invalid token\"", "ARROW", "LPAREN", + "RPAREN", "LCURLY", "RCURLY", "COLON", "QUESTION", "LBRACKET", + "RBRACKET", "DOT", "STAR", "AT", "SLASH", "MODULUS", "PLUS", "MINUS", + "TILDE", "LEQ", "LT", "GEQ", "GT", "EQ", "NEQ", "LEFT_SHIFT", + "RIGHT_SHIFT", "ASSIGN", "MUL_ASSIGN", "DIV_ASSIGN", "MOD_ASSIGN", + "ADD_ASSIGN", "SUB_ASSIGN", "LEFT_ASSIGN", "RIGHT_ASSIGN", "AND_ASSIGN", + "XOR_ASSIGN", "OR_ASSIGN", "LOG_OR", "LOG_AND", "ARITH_OR", "ARITH_AND", + "ARITH_XOR", "INC_OP", "DEC_OP", "BANG", "SEMI", "IF", "ELSE", "FOR", + "DO", "WHILE", "CHAR", "SHORT", "INT", "LONG", "UNSIGNED", "SIGNED", + "FLOAT", "DOUBLE", "VOID", "STRING", "STATIC", "EXTERN_TOKEN", "STRUCT", + "ENUM", "UNION", "CONST", "SIZEOF", "TYPEDEF", "RETURN_TOKEN", + "CONTINUE", "BREAK", "GOTO", "PRINT", "COMMA", "DOTDOTDOT", + "integer_constant", "character_constant", "string_constant", "floating_constant", "identifier_ref", "type_id", "enumeration_constant", "$accept", "start", "primary_expression", "postfix_expression", "argument_expression_list", "unary_expression", "unary_operator", @@ -886,7 +1028,7 @@ static const char *const yytname[] = "logical_and_expression", "logical_or_expression", "conditional_expression", "assignment_operator", "assignment_expression", "expression", "constant_expression", "init_declarator_list", - "declaration", "@1", "@2", "declaration_specifiers", "init_declarator", + "declaration", "$@1", "@2", "declaration_specifiers", "init_declarator", "storage_class_specifier", "type_specifier", "struct_or_union_specifier", "struct_or_union", "struct_declaration_list", "struct_declaration", "struct_declarator_list", "struct_declarator", @@ -898,134 +1040,28 @@ static const char *const yytname[] = "designator_list", "designator", "decls_stmts_list", "statement", "labeled_statement", "compound_statement", "declaration_list", "jump_statement", "expression_statement", "selection_statement", - "iteration_statement", "expression_opt", "constant", 0 + "iteration_statement", "expression_opt", "constant", YY_NULLPTR }; -#endif -# ifdef YYPRINT -/* YYTOKNUM[YYLEX-NUM] -- Internal token number corresponding to - token YYLEX-NUM. */ -static const yytype_uint16 yytoknum[] = -{ - 0, 256, 257, 258, 259, 260, 261, 262, 263, 264, - 265, 266, 267, 268, 269, 270, 271, 272, 273, 274, - 275, 276, 277, 278, 279, 280, 281, 282, 283, 284, - 285, 286, 287, 288, 289, 290, 291, 292, 293, 294, - 295, 296, 297, 298, 299, 300, 301, 302, 303, 304, - 305, 306, 307, 308, 309, 310, 311, 312, 313, 314, - 315, 316, 317, 318, 319, 320, 321, 322, 323, 324, - 325, 326, 327, 328, 329, 330, 331, 332, 333, 334, - 335, 336, 337, 338, 339 -}; -# endif - -/* YYR1[YYN] -- Symbol number of symbol that rule YYN derives. */ -static const yytype_uint8 yyr1[] = +static const char * +yysymbol_name (yysymbol_kind_t yysymbol) { - 0, 85, 86, 86, 87, 87, 87, 88, 88, 88, - 88, 88, 88, 88, 88, 89, 89, 90, 90, 90, - 90, 90, 90, 91, 91, 91, 91, 91, 91, 92, - 92, 93, 93, 93, 93, 94, 94, 94, 95, 95, - 95, 96, 96, 96, 96, 96, 97, 97, 97, 98, - 98, 99, 99, 100, 100, 101, 101, 102, 102, 103, - 103, 104, 104, 104, 104, 104, 104, 104, 104, 104, - 104, 104, 105, 105, 106, 106, 107, 108, 108, 110, - 111, 109, 109, 112, 112, 112, 112, 112, 112, 113, - 113, 114, 114, 114, 115, 115, 115, 115, 115, 115, - 115, 115, 115, 115, 115, 115, 115, 116, 116, 116, - 117, 117, 118, 118, 119, 119, 120, 120, 121, 122, - 122, 122, 122, 123, 123, 123, 123, 123, 124, 124, - 125, 125, 126, 127, 127, 128, 128, 128, 128, 128, - 128, 129, 129, 129, 129, 129, 129, 129, 129, 130, - 130, 131, 131, 132, 132, 133, 133, 134, 134, 135, - 136, 136, 136, 137, 137, 137, 137, 138, 139, 139, - 140, 140, 141, 141, 141, 141, 141, 142, 142, 142, - 142, 142, 142, 143, 144, 144, 145, 145, 146, 146, - 146, 146, 146, 147, 147, 148, 148, 149, 149, 149, - 150, 150, 151, 151, 151, 151, 151 -}; + return yytname[yysymbol]; +} +#endif -/* YYR2[YYN] -- Number of symbols composing right hand side of rule YYN. */ -static const yytype_uint8 yyr2[] = -{ - 0, 2, 1, 1, 1, 1, 3, 1, 4, 3, - 4, 3, 3, 2, 2, 1, 3, 1, 2, 2, - 2, 2, 4, 1, 1, 1, 1, 1, 1, 1, - 4, 1, 3, 3, 3, 1, 3, 3, 1, 3, - 3, 1, 3, 3, 3, 3, 1, 3, 3, 1, - 3, 1, 3, 1, 3, 1, 3, 1, 3, 1, - 5, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 3, 1, 3, 1, 1, 3, 0, - 0, 5, 2, 1, 2, 1, 2, 1, 2, 1, - 3, 1, 1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 5, 4, 2, - 1, 1, 1, 2, 2, 3, 1, 3, 1, 2, - 1, 2, 1, 4, 5, 5, 6, 2, 1, 3, - 3, 1, 1, 1, 2, 1, 3, 4, 3, 4, - 3, 1, 2, 2, 3, 1, 2, 2, 3, 1, - 2, 1, 3, 1, 3, 1, 2, 1, 2, 1, - 3, 4, 1, 2, 1, 4, 3, 2, 1, 2, - 3, 2, 1, 1, 2, 2, 2, 1, 1, 1, - 1, 1, 1, 3, 2, 3, 1, 2, 3, 2, - 2, 2, 3, 1, 2, 5, 7, 9, 5, 7, - 0, 1, 1, 1, 1, 1, 1 -}; +#define YYPACT_NINF (-239) -/* YYDEFACT[STATE-NAME] -- Default rule to reduce with in state - STATE-NUM when YYTABLE doesn't specify something else to do. Zero - means the default is an error. */ -static const yytype_uint8 yydefact[] = -{ - 0, 0, 94, 95, 96, 97, 102, 101, 98, 99, - 100, 103, 92, 93, 110, 0, 111, 132, 91, 104, - 0, 186, 79, 83, 85, 105, 0, 106, 87, 3, - 2, 0, 0, 184, 24, 25, 26, 27, 23, 0, - 0, 28, 193, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 202, 205, 204, 203, 4, 206, 7, 17, - 29, 0, 31, 35, 38, 41, 46, 49, 51, 53, - 55, 57, 59, 72, 74, 0, 173, 0, 172, 177, - 178, 182, 179, 180, 181, 5, 0, 127, 1, 82, - 0, 84, 86, 0, 109, 88, 187, 174, 4, 0, - 120, 157, 122, 0, 0, 18, 19, 0, 200, 0, - 0, 0, 21, 189, 0, 190, 191, 0, 0, 0, - 0, 0, 0, 13, 14, 61, 62, 63, 64, 65, - 66, 67, 68, 69, 70, 71, 0, 29, 20, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, - 0, 0, 0, 0, 0, 0, 0, 0, 194, 0, - 185, 176, 175, 131, 0, 128, 0, 0, 141, 145, - 135, 80, 77, 89, 133, 0, 0, 112, 0, 0, - 6, 119, 159, 158, 121, 0, 0, 201, 0, 0, - 0, 0, 188, 192, 183, 12, 11, 0, 15, 0, - 9, 73, 32, 33, 34, 36, 37, 39, 40, 44, - 42, 45, 43, 47, 48, 50, 52, 54, 56, 0, - 58, 75, 0, 123, 0, 0, 0, 149, 143, 142, - 147, 146, 0, 0, 0, 0, 0, 134, 108, 113, - 114, 0, 116, 118, 0, 30, 0, 200, 0, 0, - 22, 10, 0, 8, 0, 76, 130, 124, 129, 125, - 0, 136, 150, 144, 148, 138, 155, 0, 151, 153, - 78, 81, 0, 162, 90, 140, 0, 115, 0, 107, - 195, 0, 0, 198, 16, 60, 126, 156, 137, 0, - 0, 0, 164, 0, 0, 0, 168, 139, 117, 0, - 200, 0, 152, 154, 0, 171, 160, 0, 163, 167, - 169, 196, 0, 199, 170, 161, 166, 0, 0, 165, - 197 -}; +#define yypact_value_is_default(Yyn) \ + ((Yyn) == YYPACT_NINF) -/* YYDEFGOTO[NTERM-NUM]. */ -static const yytype_int16 yydefgoto[] = -{ - -1, 20, 58, 59, 197, 60, 61, 62, 63, 64, - 65, 66, 67, 68, 69, 70, 71, 72, 73, 136, - 74, 75, 256, 171, 21, 90, 234, 22, 172, 23, - 24, 25, 26, 176, 177, 241, 242, 178, 27, 164, - 165, 28, 173, 174, 175, 229, 267, 268, 269, 103, - 183, 274, 293, 294, 295, 296, 77, 78, 79, 80, - 30, 81, 82, 83, 84, 188, 85 -}; +#define YYTABLE_NINF (-1) + +#define yytable_value_is_error(Yyn) \ + 0 /* YYPACT[STATE-NUM] -- Index in YYTABLE of the portion describing STATE-NUM. */ -#define YYPACT_NINF -239 static const yytype_int16 yypact[] = { 808, 232, -239, -239, -239, -239, -239, -239, -239, -239, @@ -1063,6 +1099,46 @@ static const yytype_int16 yypact[] = -239 }; +/* YYDEFACT[STATE-NUM] -- Default reduction number in state STATE-NUM. + Performed when YYTABLE does not specify something else to do. Zero + means the default is an error. */ +static const yytype_uint8 yydefact[] = +{ + 0, 0, 94, 95, 96, 97, 102, 101, 98, 99, + 100, 103, 92, 93, 110, 0, 111, 132, 91, 104, + 0, 186, 79, 83, 85, 105, 0, 106, 87, 3, + 2, 0, 0, 184, 24, 25, 26, 27, 23, 0, + 0, 28, 193, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 202, 205, 204, 203, 4, 206, 7, 17, + 29, 0, 31, 35, 38, 41, 46, 49, 51, 53, + 55, 57, 59, 72, 74, 0, 173, 0, 172, 177, + 178, 182, 179, 180, 181, 5, 0, 127, 1, 82, + 0, 84, 86, 0, 109, 88, 187, 174, 4, 0, + 120, 157, 122, 0, 0, 18, 19, 0, 200, 0, + 0, 0, 21, 189, 0, 190, 191, 0, 0, 0, + 0, 0, 0, 13, 14, 61, 62, 63, 64, 65, + 66, 67, 68, 69, 70, 71, 0, 29, 20, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, + 0, 0, 0, 0, 0, 0, 0, 0, 194, 0, + 185, 176, 175, 131, 0, 128, 0, 0, 141, 145, + 135, 80, 77, 89, 133, 0, 0, 112, 0, 0, + 6, 119, 159, 158, 121, 0, 0, 201, 0, 0, + 0, 0, 188, 192, 183, 12, 11, 0, 15, 0, + 9, 73, 32, 33, 34, 36, 37, 39, 40, 44, + 42, 45, 43, 47, 48, 50, 52, 54, 56, 0, + 58, 75, 0, 123, 0, 0, 0, 149, 143, 142, + 147, 146, 0, 0, 0, 0, 0, 134, 108, 113, + 114, 0, 116, 118, 0, 30, 0, 200, 0, 0, + 22, 10, 0, 8, 0, 76, 130, 124, 129, 125, + 0, 136, 150, 144, 148, 138, 155, 0, 151, 153, + 78, 81, 0, 162, 90, 140, 0, 115, 0, 107, + 195, 0, 0, 198, 16, 60, 126, 156, 137, 0, + 0, 0, 164, 0, 0, 0, 168, 139, 117, 0, + 200, 0, 152, 154, 0, 171, 160, 0, 163, 167, + 169, 196, 0, 199, 170, 161, 166, 0, 0, 165, + 197 +}; + /* YYPGOTO[NTERM-NUM]. */ static const yytype_int16 yypgoto[] = { @@ -1075,12 +1151,22 @@ static const yytype_int16 yypgoto[] = -239, -239, -239, -239, -239, -238, -239 }; -/* YYTABLE[YYPACT[STATE-NUM]]. What to do in state STATE-NUM. If - positive, shift that token. If negative, reduce the rule which - number is the opposite. If zero, do what YYDEFACT says. - If YYTABLE_NINF, syntax error. */ -#define YYTABLE_NINF -1 -static const yytype_uint16 yytable[] = +/* YYDEFGOTO[NTERM-NUM]. */ +static const yytype_int16 yydefgoto[] = +{ + 0, 20, 58, 59, 197, 60, 61, 62, 63, 64, + 65, 66, 67, 68, 69, 70, 71, 72, 73, 136, + 74, 75, 256, 171, 21, 90, 234, 22, 172, 23, + 24, 25, 26, 176, 177, 241, 242, 178, 27, 164, + 165, 28, 173, 174, 175, 229, 267, 268, 269, 103, + 183, 274, 293, 294, 295, 296, 77, 78, 79, 80, + 30, 81, 82, 83, 84, 188, 85 +}; + +/* YYTABLE[YYPACT[STATE-NUM]] -- What to do in state STATE-NUM. If + positive, shift that token. If negative, reduce the rule whose + number is the opposite. If YYTABLE_NINF, syntax error. */ +static const yytype_int16 yytable[] = { 109, 167, 99, 91, 92, 105, 106, 257, 95, 281, 168, 169, 198, 112, 258, 138, 156, 182, 114, 101, @@ -1286,8 +1372,8 @@ static const yytype_int16 yycheck[] = -1, -1, -1, -1, -1, 83 }; -/* YYSTOS[STATE-NUM] -- The (internal number of the) accessing - symbol of state STATE-NUM. */ +/* YYSTOS[STATE-NUM] -- The symbol kind of the accessing symbol of + state STATE-NUM. */ static const yytype_uint8 yystos[] = { 0, 6, 53, 54, 55, 56, 57, 58, 59, 60, @@ -1325,178 +1411,154 @@ static const yytype_uint8 yystos[] = 142 }; -#define yyerrok (yyerrstatus = 0) -#define yyclearin (yychar = YYEMPTY) -#define YYEMPTY (-2) -#define YYEOF 0 +/* YYR1[RULE-NUM] -- Symbol kind of the left-hand side of rule RULE-NUM. */ +static const yytype_uint8 yyr1[] = +{ + 0, 85, 86, 86, 87, 87, 87, 88, 88, 88, + 88, 88, 88, 88, 88, 89, 89, 90, 90, 90, + 90, 90, 90, 91, 91, 91, 91, 91, 91, 92, + 92, 93, 93, 93, 93, 94, 94, 94, 95, 95, + 95, 96, 96, 96, 96, 96, 97, 97, 97, 98, + 98, 99, 99, 100, 100, 101, 101, 102, 102, 103, + 103, 104, 104, 104, 104, 104, 104, 104, 104, 104, + 104, 104, 105, 105, 106, 106, 107, 108, 108, 110, + 111, 109, 109, 112, 112, 112, 112, 112, 112, 113, + 113, 114, 114, 114, 115, 115, 115, 115, 115, 115, + 115, 115, 115, 115, 115, 115, 115, 116, 116, 116, + 117, 117, 118, 118, 119, 119, 120, 120, 121, 122, + 122, 122, 122, 123, 123, 123, 123, 123, 124, 124, + 125, 125, 126, 127, 127, 128, 128, 128, 128, 128, + 128, 129, 129, 129, 129, 129, 129, 129, 129, 130, + 130, 131, 131, 132, 132, 133, 133, 134, 134, 135, + 136, 136, 136, 137, 137, 137, 137, 138, 139, 139, + 140, 140, 141, 141, 141, 141, 141, 142, 142, 142, + 142, 142, 142, 143, 144, 144, 145, 145, 146, 146, + 146, 146, 146, 147, 147, 148, 148, 149, 149, 149, + 150, 150, 151, 151, 151, 151, 151 +}; + +/* YYR2[RULE-NUM] -- Number of symbols on the right-hand side of rule RULE-NUM. */ +static const yytype_int8 yyr2[] = +{ + 0, 2, 1, 1, 1, 1, 3, 1, 4, 3, + 4, 3, 3, 2, 2, 1, 3, 1, 2, 2, + 2, 2, 4, 1, 1, 1, 1, 1, 1, 1, + 4, 1, 3, 3, 3, 1, 3, 3, 1, 3, + 3, 1, 3, 3, 3, 3, 1, 3, 3, 1, + 3, 1, 3, 1, 3, 1, 3, 1, 3, 1, + 5, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 3, 1, 3, 1, 1, 3, 0, + 0, 5, 2, 1, 2, 1, 2, 1, 2, 1, + 3, 1, 1, 1, 1, 1, 1, 1, 1, 1, + 1, 1, 1, 1, 1, 1, 1, 5, 4, 2, + 1, 1, 1, 2, 2, 3, 1, 3, 1, 2, + 1, 2, 1, 4, 5, 5, 6, 2, 1, 3, + 3, 1, 1, 1, 2, 1, 3, 4, 3, 4, + 3, 1, 2, 2, 3, 1, 2, 2, 3, 1, + 2, 1, 3, 1, 3, 1, 2, 1, 2, 1, + 3, 4, 1, 2, 1, 4, 3, 2, 1, 2, + 3, 2, 1, 1, 2, 2, 2, 1, 1, 1, + 1, 1, 1, 3, 2, 3, 1, 2, 3, 2, + 2, 2, 3, 1, 2, 5, 7, 9, 5, 7, + 0, 1, 1, 1, 1, 1, 1 +}; + -#define YYACCEPT goto yyacceptlab -#define YYABORT goto yyabortlab -#define YYERROR goto yyerrorlab +enum { YYENOMEM = -2 }; +#define yyerrok (yyerrstatus = 0) +#define yyclearin (yychar = YYEMPTY) -/* Like YYERROR except do call yyerror. This remains here temporarily - to ease the transition to the new meaning of YYERROR, for GCC. - Once GCC version 2 has supplanted version 1, this can go. */ +#define YYACCEPT goto yyacceptlab +#define YYABORT goto yyabortlab +#define YYERROR goto yyerrorlab +#define YYNOMEM goto yyexhaustedlab -#define YYFAIL goto yyerrlab #define YYRECOVERING() (!!yyerrstatus) -#define YYBACKUP(Token, Value) \ -do \ - if (yychar == YYEMPTY && yylen == 1) \ - { \ - yychar = (Token); \ - yylval = (Value); \ - yytoken = YYTRANSLATE (yychar); \ - YYPOPSTACK (1); \ - goto yybackup; \ - } \ - else \ - { \ - yyerror (YY_("syntax error: cannot back up")); \ - YYERROR; \ - } \ -while (YYID (0)) - - -#define YYTERROR 1 -#define YYERRCODE 256 - - -/* YYLLOC_DEFAULT -- Set CURRENT to span from RHS[1] to RHS[N]. - If N is 0, then set CURRENT to the empty location which ends - the previous symbol: RHS[0] (always defined). */ - -#define YYRHSLOC(Rhs, K) ((Rhs)[K]) -#ifndef YYLLOC_DEFAULT -# define YYLLOC_DEFAULT(Current, Rhs, N) \ - do \ - if (YYID (N)) \ - { \ - (Current).first_line = YYRHSLOC (Rhs, 1).first_line; \ - (Current).first_column = YYRHSLOC (Rhs, 1).first_column; \ - (Current).last_line = YYRHSLOC (Rhs, N).last_line; \ - (Current).last_column = YYRHSLOC (Rhs, N).last_column; \ - } \ - else \ - { \ - (Current).first_line = (Current).last_line = \ - YYRHSLOC (Rhs, 0).last_line; \ - (Current).first_column = (Current).last_column = \ - YYRHSLOC (Rhs, 0).last_column; \ - } \ - while (YYID (0)) -#endif +#define YYBACKUP(Token, Value) \ + do \ + if (yychar == YYEMPTY) \ + { \ + yychar = (Token); \ + yylval = (Value); \ + YYPOPSTACK (yylen); \ + yystate = *yyssp; \ + goto yybackup; \ + } \ + else \ + { \ + yyerror (YY_("syntax error: cannot back up")); \ + YYERROR; \ + } \ + while (0) + +/* Backward compatibility with an undocumented macro. + Use YYerror or YYUNDEF. */ +#define YYERRCODE YYUNDEF -/* YY_LOCATION_PRINT -- Print the location on the stream. - This macro was not mandated originally: define only if we know - we won't break user code: when these are the locations we know. */ +/* Enable debugging if requested. */ +#if YYDEBUG -#ifndef YY_LOCATION_PRINT -# if defined YYLTYPE_IS_TRIVIAL && YYLTYPE_IS_TRIVIAL -# define YY_LOCATION_PRINT(File, Loc) \ - fprintf (File, "%d.%d-%d.%d", \ - (Loc).first_line, (Loc).first_column, \ - (Loc).last_line, (Loc).last_column) -# else -# define YY_LOCATION_PRINT(File, Loc) ((void) 0) +# ifndef YYFPRINTF +# include /* INFRINGES ON USER NAME SPACE */ +# define YYFPRINTF fprintf # endif -#endif +# define YYDPRINTF(Args) \ +do { \ + if (yydebug) \ + YYFPRINTF Args; \ +} while (0) -/* YYLEX -- calling `yylex' with the right arguments. */ -#ifdef YYLEX_PARAM -# define YYLEX yylex (YYLEX_PARAM) -#else -# define YYLEX yylex () -#endif -/* Enable debugging if requested. */ -#if YYDEBUG -# ifndef YYFPRINTF -# include /* INFRINGES ON USER NAME SPACE */ -# define YYFPRINTF fprintf -# endif +# define YY_SYMBOL_PRINT(Title, Kind, Value, Location) \ +do { \ + if (yydebug) \ + { \ + YYFPRINTF (stderr, "%s ", Title); \ + yy_symbol_print (stderr, \ + Kind, Value); \ + YYFPRINTF (stderr, "\n"); \ + } \ +} while (0) + + +/*-----------------------------------. +| Print this symbol's value on YYO. | +`-----------------------------------*/ -# define YYDPRINTF(Args) \ -do { \ - if (yydebug) \ - YYFPRINTF Args; \ -} while (YYID (0)) - -# define YY_SYMBOL_PRINT(Title, Type, Value, Location) \ -do { \ - if (yydebug) \ - { \ - YYFPRINTF (stderr, "%s ", Title); \ - yy_symbol_print (stderr, \ - Type, Value); \ - YYFPRINTF (stderr, "\n"); \ - } \ -} while (YYID (0)) - - -/*--------------------------------. -| Print this symbol on YYOUTPUT. | -`--------------------------------*/ - -/*ARGSUSED*/ -#if (defined __STDC__ || defined __C99__FUNC__ \ - || defined __cplusplus || defined _MSC_VER) static void -yy_symbol_value_print (FILE *yyoutput, int yytype, YYSTYPE const * const yyvaluep) -#else -static void -yy_symbol_value_print (yyoutput, yytype, yyvaluep) - FILE *yyoutput; - int yytype; - YYSTYPE const * const yyvaluep; -#endif +yy_symbol_value_print (FILE *yyo, + yysymbol_kind_t yykind, YYSTYPE const * const yyvaluep) { + FILE *yyoutput = yyo; + YY_USE (yyoutput); if (!yyvaluep) return; -# ifdef YYPRINT - if (yytype < YYNTOKENS) - YYPRINT (yyoutput, yytoknum[yytype], *yyvaluep); -# else - YYUSE (yyoutput); -# endif - switch (yytype) - { - default: - break; - } + YY_IGNORE_MAYBE_UNINITIALIZED_BEGIN + YY_USE (yykind); + YY_IGNORE_MAYBE_UNINITIALIZED_END } -/*--------------------------------. -| Print this symbol on YYOUTPUT. | -`--------------------------------*/ +/*---------------------------. +| Print this symbol on YYO. | +`---------------------------*/ -#if (defined __STDC__ || defined __C99__FUNC__ \ - || defined __cplusplus || defined _MSC_VER) static void -yy_symbol_print (FILE *yyoutput, int yytype, YYSTYPE const * const yyvaluep) -#else -static void -yy_symbol_print (yyoutput, yytype, yyvaluep) - FILE *yyoutput; - int yytype; - YYSTYPE const * const yyvaluep; -#endif +yy_symbol_print (FILE *yyo, + yysymbol_kind_t yykind, YYSTYPE const * const yyvaluep) { - if (yytype < YYNTOKENS) - YYFPRINTF (yyoutput, "token %s (", yytname[yytype]); - else - YYFPRINTF (yyoutput, "nterm %s (", yytname[yytype]); + YYFPRINTF (yyo, "%s %s (", + yykind < YYNTOKENS ? "token" : "nterm", yysymbol_name (yykind)); - yy_symbol_value_print (yyoutput, yytype, yyvaluep); - YYFPRINTF (yyoutput, ")"); + yy_symbol_value_print (yyo, yykind, yyvaluep); + YYFPRINTF (yyo, ")"); } /*------------------------------------------------------------------. @@ -1504,80 +1566,68 @@ yy_symbol_print (yyoutput, yytype, yyvaluep) | TOP (included). | `------------------------------------------------------------------*/ -#if (defined __STDC__ || defined __C99__FUNC__ \ - || defined __cplusplus || defined _MSC_VER) static void -yy_stack_print (yytype_int16 *bottom, yytype_int16 *top) -#else -static void -yy_stack_print (bottom, top) - yytype_int16 *bottom; - yytype_int16 *top; -#endif +yy_stack_print (yy_state_t *yybottom, yy_state_t *yytop) { YYFPRINTF (stderr, "Stack now"); - for (; bottom <= top; ++bottom) - YYFPRINTF (stderr, " %d", *bottom); + for (; yybottom <= yytop; yybottom++) + { + int yybot = *yybottom; + YYFPRINTF (stderr, " %d", yybot); + } YYFPRINTF (stderr, "\n"); } -# define YY_STACK_PRINT(Bottom, Top) \ -do { \ - if (yydebug) \ - yy_stack_print ((Bottom), (Top)); \ -} while (YYID (0)) +# define YY_STACK_PRINT(Bottom, Top) \ +do { \ + if (yydebug) \ + yy_stack_print ((Bottom), (Top)); \ +} while (0) /*------------------------------------------------. | Report that the YYRULE is going to be reduced. | `------------------------------------------------*/ -#if (defined __STDC__ || defined __C99__FUNC__ \ - || defined __cplusplus || defined _MSC_VER) -static void -yy_reduce_print (YYSTYPE *yyvsp, int yyrule) -#else static void -yy_reduce_print (yyvsp, yyrule) - YYSTYPE *yyvsp; - int yyrule; -#endif +yy_reduce_print (yy_state_t *yyssp, YYSTYPE *yyvsp, + int yyrule) { + int yylno = yyrline[yyrule]; int yynrhs = yyr2[yyrule]; int yyi; - unsigned long int yylno = yyrline[yyrule]; - YYFPRINTF (stderr, "Reducing stack by rule %d (line %lu):\n", - yyrule - 1, yylno); + YYFPRINTF (stderr, "Reducing stack by rule %d (line %d):\n", + yyrule - 1, yylno); /* The symbols being reduced. */ for (yyi = 0; yyi < yynrhs; yyi++) { - fprintf (stderr, " $%d = ", yyi + 1); - yy_symbol_print (stderr, yyrhs[yyprhs[yyrule] + yyi], - &(yyvsp[(yyi + 1) - (yynrhs)]) - ); - fprintf (stderr, "\n"); + YYFPRINTF (stderr, " $%d = ", yyi + 1); + yy_symbol_print (stderr, + YY_ACCESSING_SYMBOL (+yyssp[yyi + 1 - yynrhs]), + &yyvsp[(yyi + 1) - (yynrhs)]); + YYFPRINTF (stderr, "\n"); } } -# define YY_REDUCE_PRINT(Rule) \ -do { \ - if (yydebug) \ - yy_reduce_print (yyvsp, Rule); \ -} while (YYID (0)) +# define YY_REDUCE_PRINT(Rule) \ +do { \ + if (yydebug) \ + yy_reduce_print (yyssp, yyvsp, Rule); \ +} while (0) /* Nonzero means print parse trace. It is left uninitialized so that multiple parsers can coexist. */ int yydebug; #else /* !YYDEBUG */ -# define YYDPRINTF(Args) -# define YY_SYMBOL_PRINT(Title, Type, Value, Location) +# define YYDPRINTF(Args) ((void) 0) +# define YY_SYMBOL_PRINT(Title, Kind, Value, Location) # define YY_STACK_PRINT(Bottom, Top) # define YY_REDUCE_PRINT(Rule) #endif /* !YYDEBUG */ /* YYINITDEPTH -- initial size of the parser's stacks. */ -#ifndef YYINITDEPTH +#ifndef YYINITDEPTH # define YYINITDEPTH 200 #endif @@ -1592,478 +1642,219 @@ int yydebug; # define YYMAXDEPTH 10000 #endif - - -#if YYERROR_VERBOSE - -# ifndef yystrlen -# if defined __GLIBC__ && defined _STRING_H -# define yystrlen strlen -# else -/* Return the length of YYSTR. */ -#if (defined __STDC__ || defined __C99__FUNC__ \ - || defined __cplusplus || defined _MSC_VER) -static YYSIZE_T -yystrlen (const char *yystr) -#else -static YYSIZE_T -yystrlen (yystr) - const char *yystr; -#endif -{ - YYSIZE_T yylen; - for (yylen = 0; yystr[yylen]; yylen++) - continue; - return yylen; -} -# endif -# endif - -# ifndef yystpcpy -# if defined __GLIBC__ && defined _STRING_H && defined _GNU_SOURCE -# define yystpcpy stpcpy -# else -/* Copy YYSRC to YYDEST, returning the address of the terminating '\0' in - YYDEST. */ -#if (defined __STDC__ || defined __C99__FUNC__ \ - || defined __cplusplus || defined _MSC_VER) -static char * -yystpcpy (char *yydest, const char *yysrc) -#else -static char * -yystpcpy (yydest, yysrc) - char *yydest; - const char *yysrc; -#endif -{ - char *yyd = yydest; - const char *yys = yysrc; - - while ((*yyd++ = *yys++) != '\0') - continue; - - return yyd - 1; -} -# endif -# endif - -# ifndef yytnamerr -/* Copy to YYRES the contents of YYSTR after stripping away unnecessary - quotes and backslashes, so that it's suitable for yyerror. The - heuristic is that double-quoting is unnecessary unless the string - contains an apostrophe, a comma, or backslash (other than - backslash-backslash). YYSTR is taken from yytname. If YYRES is - null, do not copy; instead, return the length of what the result - would have been. */ -static YYSIZE_T -yytnamerr (char *yyres, const char *yystr) -{ - if (*yystr == '"') - { - YYSIZE_T yyn = 0; - char const *yyp = yystr; - - for (;;) - switch (*++yyp) - { - case '\'': - case ',': - goto do_not_strip_quotes; - - case '\\': - if (*++yyp != '\\') - goto do_not_strip_quotes; - /* Fall through. */ - default: - if (yyres) - yyres[yyn] = *yyp; - yyn++; - break; - - case '"': - if (yyres) - yyres[yyn] = '\0'; - return yyn; - } - do_not_strip_quotes: ; - } - - if (! yyres) - return yystrlen (yystr); - return yystpcpy (yyres, yystr) - yyres; -} -# endif - -/* Copy into YYRESULT an error message about the unexpected token - YYCHAR while in state YYSTATE. Return the number of bytes copied, - including the terminating null byte. If YYRESULT is null, do not - copy anything; just return the number of bytes that would be - copied. As a special case, return 0 if an ordinary "syntax error" - message will do. Return YYSIZE_MAXIMUM if overflow occurs during - size calculation. */ -static YYSIZE_T -yysyntax_error (char *yyresult, int yystate, int yychar) -{ - int yyn = yypact[yystate]; - - if (! (YYPACT_NINF < yyn && yyn <= YYLAST)) - return 0; - else - { - int yytype = YYTRANSLATE (yychar); - YYSIZE_T yysize0 = yytnamerr (0, yytname[yytype]); - YYSIZE_T yysize = yysize0; - YYSIZE_T yysize1; - int yysize_overflow = 0; - enum { YYERROR_VERBOSE_ARGS_MAXIMUM = 5 }; - char const *yyarg[YYERROR_VERBOSE_ARGS_MAXIMUM]; - int yyx; - -# if 0 - /* This is so xgettext sees the translatable formats that are - constructed on the fly. */ - YY_("syntax error, unexpected %s"); - YY_("syntax error, unexpected %s, expecting %s"); - YY_("syntax error, unexpected %s, expecting %s or %s"); - YY_("syntax error, unexpected %s, expecting %s or %s or %s"); - YY_("syntax error, unexpected %s, expecting %s or %s or %s or %s"); -# endif - char *yyfmt; - char const *yyf; - static char const yyunexpected[] = "syntax error, unexpected %s"; - static char const yyexpecting[] = ", expecting %s"; - static char const yyor[] = " or %s"; - char yyformat[sizeof yyunexpected - + sizeof yyexpecting - 1 - + ((YYERROR_VERBOSE_ARGS_MAXIMUM - 2) - * (sizeof yyor - 1))]; - char const *yyprefix = yyexpecting; - - /* Start YYX at -YYN if negative to avoid negative indexes in - YYCHECK. */ - int yyxbegin = yyn < 0 ? -yyn : 0; - - /* Stay within bounds of both yycheck and yytname. */ - int yychecklim = YYLAST - yyn + 1; - int yyxend = yychecklim < YYNTOKENS ? yychecklim : YYNTOKENS; - int yycount = 1; - - yyarg[0] = yytname[yytype]; - yyfmt = yystpcpy (yyformat, yyunexpected); - - for (yyx = yyxbegin; yyx < yyxend; ++yyx) - if (yycheck[yyx + yyn] == yyx && yyx != YYTERROR) - { - if (yycount == YYERROR_VERBOSE_ARGS_MAXIMUM) - { - yycount = 1; - yysize = yysize0; - yyformat[sizeof yyunexpected - 1] = '\0'; - break; - } - yyarg[yycount++] = yytname[yyx]; - yysize1 = yysize + yytnamerr (0, yytname[yyx]); - yysize_overflow |= (yysize1 < yysize); - yysize = yysize1; - yyfmt = yystpcpy (yyfmt, yyprefix); - yyprefix = yyor; - } - yyf = YY_(yyformat); - yysize1 = yysize + yystrlen (yyf); - yysize_overflow |= (yysize1 < yysize); - yysize = yysize1; - if (yysize_overflow) - return YYSIZE_MAXIMUM; - if (yyresult) - { - /* Avoid sprintf, as that infringes on the user's name space. - Don't have undefined behavior even if the translation - produced a string with the wrong number of "%s"s. */ - char *yyp = yyresult; - int yyi = 0; - while ((*yyp = *yyf) != '\0') - { - if (*yyp == '%' && yyf[1] == 's' && yyi < yycount) - { - yyp += yytnamerr (yyp, yyarg[yyi++]); - yyf += 2; - } - else - { - yyp++; - yyf++; - } - } - } - return yysize; - } -} -#endif /* YYERROR_VERBOSE */ - /*-----------------------------------------------. | Release the memory associated to this symbol. | `-----------------------------------------------*/ -/*ARGSUSED*/ -#if (defined __STDC__ || defined __C99__FUNC__ \ - || defined __cplusplus || defined _MSC_VER) -static void -yydestruct (const char *yymsg, int yytype, YYSTYPE *yyvaluep) -#else static void -yydestruct (yymsg, yytype, yyvaluep) - const char *yymsg; - int yytype; - YYSTYPE *yyvaluep; -#endif +yydestruct (const char *yymsg, + yysymbol_kind_t yykind, YYSTYPE *yyvaluep) { - YYUSE (yyvaluep); - + YY_USE (yyvaluep); if (!yymsg) yymsg = "Deleting"; - YY_SYMBOL_PRINT (yymsg, yytype, yyvaluep, yylocationp); - - switch (yytype) - { + YY_SYMBOL_PRINT (yymsg, yykind, yyvaluep, yylocationp); - default: - break; - } + YY_IGNORE_MAYBE_UNINITIALIZED_BEGIN + YY_USE (yykind); + YY_IGNORE_MAYBE_UNINITIALIZED_END } - - -/* Prevent warnings from -Wmissing-prototypes. */ - -#ifdef YYPARSE_PARAM -#if defined __STDC__ || defined __cplusplus -int yyparse (void *YYPARSE_PARAM); -#else -int yyparse (); -#endif -#else /* ! YYPARSE_PARAM */ -#if defined __STDC__ || defined __cplusplus -int yyparse (void); -#else -int yyparse (); -#endif -#endif /* ! YYPARSE_PARAM */ - -/* The look-ahead symbol. */ +/* Lookahead token kind. */ int yychar; -/* The semantic value of the look-ahead symbol. */ +/* The semantic value of the lookahead symbol. */ YYSTYPE yylval; - /* Number of syntax errors so far. */ int yynerrs; + /*----------. | yyparse. | `----------*/ -#ifdef YYPARSE_PARAM -#if (defined __STDC__ || defined __C99__FUNC__ \ - || defined __cplusplus || defined _MSC_VER) -int -yyparse (void *YYPARSE_PARAM) -#else -int -yyparse (YYPARSE_PARAM) - void *YYPARSE_PARAM; -#endif -#else /* ! YYPARSE_PARAM */ -#if (defined __STDC__ || defined __C99__FUNC__ \ - || defined __cplusplus || defined _MSC_VER) int yyparse (void) -#else -int -yyparse () - -#endif -#endif { - - int yystate; - int yyn; - int yyresult; - /* Number of tokens to shift before error messages enabled. */ - int yyerrstatus; - /* Look-ahead token as an internal (translated) token number. */ - int yytoken = 0; -#if YYERROR_VERBOSE - /* Buffer for error messages, and its allocated size. */ - char yymsgbuf[128]; - char *yymsg = yymsgbuf; - YYSIZE_T yymsg_alloc = sizeof yymsgbuf; -#endif - - /* Three stacks and their tools: - `yyss': related to states, - `yyvs': related to semantic values, - `yyls': related to locations. - - Refer to the stacks thru separate pointers, to allow yyoverflow - to reallocate them elsewhere. */ - - /* The state stack. */ - yytype_int16 yyssa[YYINITDEPTH]; - yytype_int16 *yyss = yyssa; - yytype_int16 *yyssp; - - /* The semantic value stack. */ - YYSTYPE yyvsa[YYINITDEPTH]; - YYSTYPE *yyvs = yyvsa; - YYSTYPE *yyvsp; + yy_state_fast_t yystate = 0; + /* Number of tokens to shift before error messages enabled. */ + int yyerrstatus = 0; + /* Refer to the stacks through separate pointers, to allow yyoverflow + to reallocate them elsewhere. */ + /* Their size. */ + YYPTRDIFF_T yystacksize = YYINITDEPTH; -#define YYPOPSTACK(N) (yyvsp -= (N), yyssp -= (N)) + /* The state stack: array, bottom, top. */ + yy_state_t yyssa[YYINITDEPTH]; + yy_state_t *yyss = yyssa; + yy_state_t *yyssp = yyss; - YYSIZE_T yystacksize = YYINITDEPTH; + /* The semantic value stack: array, bottom, top. */ + YYSTYPE yyvsa[YYINITDEPTH]; + YYSTYPE *yyvs = yyvsa; + YYSTYPE *yyvsp = yyvs; + int yyn; + /* The return value of yyparse. */ + int yyresult; + /* Lookahead symbol kind. */ + yysymbol_kind_t yytoken = YYSYMBOL_YYEMPTY; /* The variables used to return semantic value and location from the action routines. */ YYSTYPE yyval; + +#define YYPOPSTACK(N) (yyvsp -= (N), yyssp -= (N)) + /* The number of symbols on the RHS of the reduced rule. Keep to zero when no symbol should be popped. */ int yylen = 0; YYDPRINTF ((stderr, "Starting parse\n")); - yystate = 0; - yyerrstatus = 0; - yynerrs = 0; - yychar = YYEMPTY; /* Cause a token to be read. */ - - /* Initialize stack pointers. - Waste one element of value and location stack - so that they stay on the same level as the state stack. - The wasted elements are never initialized. */ - - yyssp = yyss; - yyvsp = yyvs; + yychar = YYEMPTY; /* Cause a token to be read. */ goto yysetstate; + /*------------------------------------------------------------. -| yynewstate -- Push a new state, which is found in yystate. | +| yynewstate -- push a new state, which is found in yystate. | `------------------------------------------------------------*/ - yynewstate: +yynewstate: /* In all cases, when you get here, the value and location stacks have just been pushed. So pushing a state here evens the stacks. */ yyssp++; - yysetstate: - *yyssp = yystate; + +/*--------------------------------------------------------------------. +| yysetstate -- set current state (the top of the stack) to yystate. | +`--------------------------------------------------------------------*/ +yysetstate: + YYDPRINTF ((stderr, "Entering state %d\n", yystate)); + YY_ASSERT (0 <= yystate && yystate < YYNSTATES); + YY_IGNORE_USELESS_CAST_BEGIN + *yyssp = YY_CAST (yy_state_t, yystate); + YY_IGNORE_USELESS_CAST_END + YY_STACK_PRINT (yyss, yyssp); if (yyss + yystacksize - 1 <= yyssp) +#if !defined yyoverflow && !defined YYSTACK_RELOCATE + YYNOMEM; +#else { /* Get the current used size of the three stacks, in elements. */ - YYSIZE_T yysize = yyssp - yyss + 1; + YYPTRDIFF_T yysize = yyssp - yyss + 1; -#ifdef yyoverflow +# if defined yyoverflow { - /* Give user a chance to reallocate the stack. Use copies of - these so that the &'s don't force the real ones into - memory. */ - YYSTYPE *yyvs1 = yyvs; - yytype_int16 *yyss1 = yyss; - - - /* Each stack pointer address is followed by the size of the - data in use in that stack, in bytes. This used to be a - conditional around just the two extra args, but that might - be undefined if yyoverflow is a macro. */ - yyoverflow (YY_("memory exhausted"), - &yyss1, yysize * sizeof (*yyssp), - &yyvs1, yysize * sizeof (*yyvsp), - - &yystacksize); - - yyss = yyss1; - yyvs = yyvs1; + /* Give user a chance to reallocate the stack. Use copies of + these so that the &'s don't force the real ones into + memory. */ + yy_state_t *yyss1 = yyss; + YYSTYPE *yyvs1 = yyvs; + + /* Each stack pointer address is followed by the size of the + data in use in that stack, in bytes. This used to be a + conditional around just the two extra args, but that might + be undefined if yyoverflow is a macro. */ + yyoverflow (YY_("memory exhausted"), + &yyss1, yysize * YYSIZEOF (*yyssp), + &yyvs1, yysize * YYSIZEOF (*yyvsp), + &yystacksize); + yyss = yyss1; + yyvs = yyvs1; } -#else /* no yyoverflow */ -# ifndef YYSTACK_RELOCATE - goto yyexhaustedlab; -# else +# else /* defined YYSTACK_RELOCATE */ /* Extend the stack our own way. */ if (YYMAXDEPTH <= yystacksize) - goto yyexhaustedlab; + YYNOMEM; yystacksize *= 2; if (YYMAXDEPTH < yystacksize) - yystacksize = YYMAXDEPTH; + yystacksize = YYMAXDEPTH; { - yytype_int16 *yyss1 = yyss; - union yyalloc *yyptr = - (union yyalloc *) YYSTACK_ALLOC (YYSTACK_BYTES (yystacksize)); - if (! yyptr) - goto yyexhaustedlab; - YYSTACK_RELOCATE (yyss); - YYSTACK_RELOCATE (yyvs); - + yy_state_t *yyss1 = yyss; + union yyalloc *yyptr = + YY_CAST (union yyalloc *, + YYSTACK_ALLOC (YY_CAST (YYSIZE_T, YYSTACK_BYTES (yystacksize)))); + if (! yyptr) + YYNOMEM; + YYSTACK_RELOCATE (yyss_alloc, yyss); + YYSTACK_RELOCATE (yyvs_alloc, yyvs); # undef YYSTACK_RELOCATE - if (yyss1 != yyssa) - YYSTACK_FREE (yyss1); + if (yyss1 != yyssa) + YYSTACK_FREE (yyss1); } # endif -#endif /* no yyoverflow */ yyssp = yyss + yysize - 1; yyvsp = yyvs + yysize - 1; - - YYDPRINTF ((stderr, "Stack size increased to %lu\n", - (unsigned long int) yystacksize)); + YY_IGNORE_USELESS_CAST_BEGIN + YYDPRINTF ((stderr, "Stack size increased to %ld\n", + YY_CAST (long, yystacksize))); + YY_IGNORE_USELESS_CAST_END if (yyss + yystacksize - 1 <= yyssp) - YYABORT; + YYABORT; } +#endif /* !defined yyoverflow && !defined YYSTACK_RELOCATE */ - YYDPRINTF ((stderr, "Entering state %d\n", yystate)); + + if (yystate == YYFINAL) + YYACCEPT; goto yybackup; + /*-----------. | yybackup. | `-----------*/ yybackup: - /* Do appropriate processing given the current state. Read a - look-ahead token if we need one and don't already have one. */ + lookahead token if we need one and don't already have one. */ - /* First try to decide what to do without reference to look-ahead token. */ + /* First try to decide what to do without reference to lookahead token. */ yyn = yypact[yystate]; - if (yyn == YYPACT_NINF) + if (yypact_value_is_default (yyn)) goto yydefault; - /* Not known => get a look-ahead token if don't already have one. */ + /* Not known => get a lookahead token if don't already have one. */ - /* YYCHAR is either YYEMPTY or YYEOF or a valid look-ahead symbol. */ + /* YYCHAR is either empty, or end-of-input, or a valid lookahead. */ if (yychar == YYEMPTY) { - YYDPRINTF ((stderr, "Reading a token: ")); - yychar = YYLEX; + YYDPRINTF ((stderr, "Reading a token\n")); + yychar = yylex (); } if (yychar <= YYEOF) { - yychar = yytoken = YYEOF; + yychar = YYEOF; + yytoken = YYSYMBOL_YYEOF; YYDPRINTF ((stderr, "Now at end of input.\n")); } + else if (yychar == YYerror) + { + /* The scanner already issued an error message, process directly + to error recovery. But do not keep the error token as + lookahead, it is too special and may lead us to an endless + loop in error recovery. */ + yychar = YYUNDEF; + yytoken = YYSYMBOL_YYerror; + goto yyerrlab1; + } else { yytoken = YYTRANSLATE (yychar); @@ -2078,30 +1869,26 @@ yyparse () yyn = yytable[yyn]; if (yyn <= 0) { - if (yyn == 0 || yyn == YYTABLE_NINF) - goto yyerrlab; + if (yytable_value_is_error (yyn)) + goto yyerrlab; yyn = -yyn; goto yyreduce; } - if (yyn == YYFINAL) - YYACCEPT; - /* Count tokens shifted since error; after three, turn off error status. */ if (yyerrstatus) yyerrstatus--; - /* Shift the look-ahead token. */ + /* Shift the lookahead token. */ YY_SYMBOL_PRINT ("Shifting", yytoken, &yylval, &yylloc); - - /* Discard the shifted token unless it is eof. */ - if (yychar != YYEOF) - yychar = YYEMPTY; - yystate = yyn; + YY_IGNORE_MAYBE_UNINITIALIZED_BEGIN *++yyvsp = yylval; + YY_IGNORE_MAYBE_UNINITIALIZED_END + /* Discard the shifted token. */ + yychar = YYEMPTY; goto yynewstate; @@ -2116,14 +1903,14 @@ yyparse () /*-----------------------------. -| yyreduce -- Do a reduction. | +| yyreduce -- do a reduction. | `-----------------------------*/ yyreduce: /* yyn is the number of a rule to reduce with. */ yylen = yyr2[yyn]; /* If YYLEN is nonzero, implement the default value of the action: - `$$ = $1'. + '$$ = $1'. Otherwise, the following line sets YYVAL to garbage. This behavior is undocumented and Bison @@ -2136,613 +1923,676 @@ yyparse () YY_REDUCE_PRINT (yyn); switch (yyn) { - case 2: -#line 344 "cod/cod.y" - { - yyparse_value = (sm_ref)(yyvsp[(1) - (1)].list); - ;} + case 2: /* start: declaration_list */ +#line 358 "cod.y" + { + yyparse_value = (sm_ref)(yyvsp[0].list); + } +#line 1932 "cod.tab.c" break; - case 3: -#line 348 "cod/cod.y" - { - yyparse_value = (yyvsp[(1) - (1)].reference); - ;} + case 3: /* start: compound_statement */ +#line 362 "cod.y" + { + yyparse_value = (yyvsp[0].reference); + } +#line 1940 "cod.tab.c" break; - case 4: -#line 354 "cod/cod.y" - { + case 4: /* primary_expression: identifier_ref */ +#line 368 "cod.y" + { (yyval.reference) = cod_new_identifier(); - (yyval.reference)->node.identifier.id = (yyvsp[(1) - (1)].info).string; - (yyval.reference)->node.identifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; - ;} + (yyval.reference)->node.identifier.id = (yyvsp[0].info).string; + (yyval.reference)->node.identifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; + } +#line 1950 "cod.tab.c" break; - case 6: -#line 363 "cod/cod.y" - { (yyval.reference) = (yyvsp[(2) - (3)].reference); ;} + case 6: /* primary_expression: LPAREN expression RPAREN */ +#line 377 "cod.y" + { (yyval.reference) = (yyvsp[-1].reference); } +#line 1956 "cod.tab.c" break; - case 8: -#line 371 "cod/cod.y" - { + case 8: /* postfix_expression: postfix_expression LBRACKET expression RBRACKET */ +#line 385 "cod.y" + { (yyval.reference) = cod_new_element_ref(); - (yyval.reference)->node.element_ref.lx_srcpos = (yyvsp[(2) - (4)].info).lx_srcpos; - (yyval.reference)->node.element_ref.expression = (yyvsp[(3) - (4)].reference); - (yyval.reference)->node.element_ref.array_ref = (yyvsp[(1) - (4)].reference); - ;} + (yyval.reference)->node.element_ref.lx_srcpos = (yyvsp[-2].info).lx_srcpos; + (yyval.reference)->node.element_ref.expression = (yyvsp[-1].reference); + (yyval.reference)->node.element_ref.array_ref = (yyvsp[-3].reference); + } +#line 1967 "cod.tab.c" break; - case 9: -#line 378 "cod/cod.y" - { + case 9: /* postfix_expression: postfix_expression DOT identifier_ref */ +#line 392 "cod.y" + { (yyval.reference) = cod_new_field_ref(); - (yyval.reference)->node.field_ref.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; - (yyval.reference)->node.field_ref.lx_field = (yyvsp[(3) - (3)].info).string; - (yyval.reference)->node.field_ref.struct_ref = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.field_ref.lx_srcpos = (yyvsp[-1].info).lx_srcpos; + (yyval.reference)->node.field_ref.lx_field = (yyvsp[0].info).string; + (yyval.reference)->node.field_ref.struct_ref = (yyvsp[-2].reference); + } +#line 1978 "cod.tab.c" break; - case 10: -#line 385 "cod/cod.y" - { + case 10: /* postfix_expression: postfix_expression LPAREN argument_expression_list RPAREN */ +#line 399 "cod.y" + { (yyval.reference) = cod_new_subroutine_call(); - (yyval.reference)->node.subroutine_call.lx_srcpos = (yyvsp[(2) - (4)].info).lx_srcpos; - (yyval.reference)->node.subroutine_call.arguments = (yyvsp[(3) - (4)].list); - (yyval.reference)->node.subroutine_call.sm_func_ref = (yyvsp[(1) - (4)].reference); - ;} + (yyval.reference)->node.subroutine_call.lx_srcpos = (yyvsp[-2].info).lx_srcpos; + (yyval.reference)->node.subroutine_call.arguments = (yyvsp[-1].list); + (yyval.reference)->node.subroutine_call.sm_func_ref = (yyvsp[-3].reference); + } +#line 1989 "cod.tab.c" break; - case 11: -#line 392 "cod/cod.y" - { + case 11: /* postfix_expression: postfix_expression LPAREN RPAREN */ +#line 406 "cod.y" + { (yyval.reference) = cod_new_subroutine_call(); - (yyval.reference)->node.subroutine_call.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.subroutine_call.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.subroutine_call.arguments = NULL; - (yyval.reference)->node.subroutine_call.sm_func_ref = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.subroutine_call.sm_func_ref = (yyvsp[-2].reference); + } +#line 2000 "cod.tab.c" break; - case 12: -#line 398 "cod/cod.y" - { + case 12: /* postfix_expression: postfix_expression ARROW identifier_ref */ +#line 412 "cod.y" + { (yyval.reference) = cod_new_field_ref(); - (yyval.reference)->node.field_ref.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; - (yyval.reference)->node.field_ref.lx_field = (yyvsp[(3) - (3)].info).string; - (yyval.reference)->node.field_ref.struct_ref = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.field_ref.lx_srcpos = (yyvsp[-1].info).lx_srcpos; + (yyval.reference)->node.field_ref.lx_field = (yyvsp[0].info).string; + (yyval.reference)->node.field_ref.struct_ref = (yyvsp[-2].reference); + } +#line 2011 "cod.tab.c" break; - case 13: -#line 404 "cod/cod.y" - { + case 13: /* postfix_expression: postfix_expression INC_OP */ +#line 418 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (2)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.operator.op = op_inc; (yyval.reference)->node.operator.right = NULL; - (yyval.reference)->node.operator.left = (yyvsp[(1) - (2)].reference); - ;} + (yyval.reference)->node.operator.left = (yyvsp[-1].reference); + } +#line 2023 "cod.tab.c" break; - case 14: -#line 411 "cod/cod.y" - { + case 14: /* postfix_expression: postfix_expression DEC_OP */ +#line 425 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (2)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.operator.op = op_dec; (yyval.reference)->node.operator.right = NULL; - (yyval.reference)->node.operator.left = (yyvsp[(1) - (2)].reference); - ;} + (yyval.reference)->node.operator.left = (yyvsp[-1].reference); + } +#line 2035 "cod.tab.c" break; - case 15: -#line 421 "cod/cod.y" - { + case 15: /* argument_expression_list: assignment_expression */ +#line 435 "cod.y" + { (yyval.list) = malloc(sizeof(struct list_struct)); - (yyval.list)->node = (yyvsp[(1) - (1)].reference); + (yyval.list)->node = (yyvsp[0].reference); (yyval.list)->next = NULL; - ;} + } +#line 2045 "cod.tab.c" break; - case 16: -#line 427 "cod/cod.y" - { - sm_list tmp = (yyvsp[(1) - (3)].list); + case 16: /* argument_expression_list: argument_expression_list COMMA assignment_expression */ +#line 441 "cod.y" + { + sm_list tmp = (yyvsp[-2].list); while (tmp->next != NULL) { tmp = tmp->next; } tmp->next = malloc(sizeof(struct list_struct)); - tmp->next->node = (yyvsp[(3) - (3)].reference); + tmp->next->node = (yyvsp[0].reference); tmp->next->next = NULL; - (yyval.list) = (yyvsp[(1) - (3)].list); - ;} + (yyval.list) = (yyvsp[-2].list); + } +#line 2060 "cod.tab.c" break; - case 18: -#line 442 "cod/cod.y" - { + case 18: /* unary_expression: INC_OP unary_expression */ +#line 456 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_inc; - (yyval.reference)->node.operator.right = (yyvsp[(2) - (2)].reference); + (yyval.reference)->node.operator.right = (yyvsp[0].reference); (yyval.reference)->node.operator.left = NULL; - ;} + } +#line 2072 "cod.tab.c" break; - case 19: -#line 449 "cod/cod.y" - { + case 19: /* unary_expression: DEC_OP unary_expression */ +#line 463 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_dec; - (yyval.reference)->node.operator.right = (yyvsp[(2) - (2)].reference); + (yyval.reference)->node.operator.right = (yyvsp[0].reference); (yyval.reference)->node.operator.left = NULL; - ;} + } +#line 2084 "cod.tab.c" break; - case 20: -#line 456 "cod/cod.y" - { + case 20: /* unary_expression: unary_operator cast_expression */ +#line 470 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; - (yyval.reference)->node.operator.op = (yyvsp[(1) - (2)].info).op; - (yyval.reference)->node.operator.right = (yyvsp[(2) - (2)].reference); + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; + (yyval.reference)->node.operator.op = (yyvsp[-1].info).op; + (yyval.reference)->node.operator.right = (yyvsp[0].reference); (yyval.reference)->node.operator.left = NULL; - ;} + } +#line 2096 "cod.tab.c" break; - case 21: -#line 463 "cod/cod.y" - { + case 21: /* unary_expression: SIZEOF unary_expression */ +#line 477 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_sizeof; - (yyval.reference)->node.operator.right = (yyvsp[(2) - (2)].reference); + (yyval.reference)->node.operator.right = (yyvsp[0].reference); (yyval.reference)->node.operator.left = NULL; - ;} + } +#line 2108 "cod.tab.c" break; - case 22: -#line 470 "cod/cod.y" - { + case 22: /* unary_expression: SIZEOF LPAREN type_name RPAREN */ +#line 484 "cod.y" + { /* dummy up a cast to hold the sm_list of the type */ sm_ref cast = cod_new_cast(); - cast->node.cast.lx_srcpos = (yyvsp[(1) - (4)].info).lx_srcpos; - cast->node.cast.type_spec = (yyvsp[(3) - (4)].list); + cast->node.cast.lx_srcpos = (yyvsp[-3].info).lx_srcpos; + cast->node.cast.type_spec = (yyvsp[-1].list); cast->node.cast.expression = NULL; (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(1) - (4)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-3].info).lx_srcpos; (yyval.reference)->node.operator.op = op_sizeof; (yyval.reference)->node.operator.right = cast; (yyval.reference)->node.operator.left = NULL; - ;} + } +#line 2126 "cod.tab.c" break; - case 23: -#line 485 "cod/cod.y" - { + case 23: /* unary_operator: ARITH_AND */ +#line 499 "cod.y" + { (yyval.info).op = op_address; - ;} + } +#line 2134 "cod.tab.c" break; - case 24: -#line 488 "cod/cod.y" - { + case 24: /* unary_operator: STAR */ +#line 502 "cod.y" + { (yyval.info).op = op_deref; - ;} + } +#line 2142 "cod.tab.c" break; - case 25: -#line 491 "cod/cod.y" - { + case 25: /* unary_operator: PLUS */ +#line 505 "cod.y" + { (yyval.info).op = op_plus; - ;} + } +#line 2150 "cod.tab.c" break; - case 26: -#line 494 "cod/cod.y" - { + case 26: /* unary_operator: MINUS */ +#line 508 "cod.y" + { (yyval.info).op = op_minus; - ;} + } +#line 2158 "cod.tab.c" break; - case 27: -#line 497 "cod/cod.y" - { + case 27: /* unary_operator: TILDE */ +#line 511 "cod.y" + { (yyval.info).op = op_not; - ;} + } +#line 2166 "cod.tab.c" break; - case 28: -#line 500 "cod/cod.y" - { + case 28: /* unary_operator: BANG */ +#line 514 "cod.y" + { (yyval.info).op = op_log_neg; - ;} + } +#line 2174 "cod.tab.c" break; - case 30: -#line 507 "cod/cod.y" - { + case 30: /* cast_expression: LPAREN type_name RPAREN cast_expression */ +#line 521 "cod.y" + { (yyval.reference) = cod_new_cast(); - (yyval.reference)->node.cast.lx_srcpos = (yyvsp[(1) - (4)].info).lx_srcpos; - (yyval.reference)->node.cast.type_spec = (yyvsp[(2) - (4)].list); - (yyval.reference)->node.cast.expression = (yyvsp[(4) - (4)].reference); - ;} + (yyval.reference)->node.cast.lx_srcpos = (yyvsp[-3].info).lx_srcpos; + (yyval.reference)->node.cast.type_spec = (yyvsp[-2].list); + (yyval.reference)->node.cast.expression = (yyvsp[0].reference); + } +#line 2185 "cod.tab.c" break; - case 32: -#line 519 "cod/cod.y" - { + case 32: /* multiplicative_expression: multiplicative_expression STAR cast_expression */ +#line 533 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_mult; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2197 "cod.tab.c" break; - case 33: -#line 528 "cod/cod.y" - { + case 33: /* multiplicative_expression: multiplicative_expression SLASH cast_expression */ +#line 542 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_div; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2209 "cod.tab.c" break; - case 34: -#line 537 "cod/cod.y" - { + case 34: /* multiplicative_expression: multiplicative_expression MODULUS cast_expression */ +#line 551 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_modulus; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2221 "cod.tab.c" break; - case 36: -#line 550 "cod/cod.y" - { + case 36: /* additive_expression: additive_expression PLUS multiplicative_expression */ +#line 564 "cod.y" + { (yyval.reference) = cod_new_operator(); (yyval.reference)->node.operator.op = op_plus; - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2233 "cod.tab.c" break; - case 37: -#line 559 "cod/cod.y" - { + case 37: /* additive_expression: additive_expression MINUS multiplicative_expression */ +#line 573 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_minus; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2245 "cod.tab.c" break; - case 39: -#line 572 "cod/cod.y" - { + case 39: /* shift_expression: shift_expression LEFT_SHIFT additive_expression */ +#line 586 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_left_shift; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2257 "cod.tab.c" break; - case 40: -#line 581 "cod/cod.y" - { + case 40: /* shift_expression: shift_expression RIGHT_SHIFT additive_expression */ +#line 595 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_right_shift; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2269 "cod.tab.c" break; - case 42: -#line 594 "cod/cod.y" - { + case 42: /* relational_expression: relational_expression LT shift_expression */ +#line 608 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_lt; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2281 "cod.tab.c" break; - case 43: -#line 603 "cod/cod.y" - { + case 43: /* relational_expression: relational_expression GT shift_expression */ +#line 617 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_gt; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2293 "cod.tab.c" break; - case 44: -#line 612 "cod/cod.y" - { + case 44: /* relational_expression: relational_expression LEQ shift_expression */ +#line 626 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_leq; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2305 "cod.tab.c" break; - case 45: -#line 621 "cod/cod.y" - { + case 45: /* relational_expression: relational_expression GEQ shift_expression */ +#line 635 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_geq; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2317 "cod.tab.c" break; - case 47: -#line 634 "cod/cod.y" - { + case 47: /* equality_expression: equality_expression EQ relational_expression */ +#line 648 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_eq; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2329 "cod.tab.c" break; - case 48: -#line 643 "cod/cod.y" - { + case 48: /* equality_expression: equality_expression NEQ relational_expression */ +#line 657 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_neq; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2341 "cod.tab.c" break; - case 50: -#line 656 "cod/cod.y" - { + case 50: /* and_expression: and_expression ARITH_AND equality_expression */ +#line 670 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_arith_and; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2353 "cod.tab.c" break; - case 52: -#line 669 "cod/cod.y" - { + case 52: /* exclusive_or_expression: exclusive_or_expression ARITH_XOR and_expression */ +#line 683 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_arith_xor; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2365 "cod.tab.c" break; - case 54: -#line 682 "cod/cod.y" - { + case 54: /* inclusive_or_expression: inclusive_or_expression ARITH_OR exclusive_or_expression */ +#line 696 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_arith_or; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2377 "cod.tab.c" break; - case 56: -#line 695 "cod/cod.y" - { + case 56: /* logical_and_expression: logical_and_expression LOG_AND inclusive_or_expression */ +#line 709 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_log_and; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2389 "cod.tab.c" break; - case 58: -#line 708 "cod/cod.y" - { + case 58: /* logical_or_expression: logical_or_expression LOG_OR logical_and_expression */ +#line 722 "cod.y" + { (yyval.reference) = cod_new_operator(); - (yyval.reference)->node.operator.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.operator.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.operator.op = op_log_or; - (yyval.reference)->node.operator.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.operator.left = (yyvsp[(1) - (3)].reference); - ;} + (yyval.reference)->node.operator.right = (yyvsp[0].reference); + (yyval.reference)->node.operator.left = (yyvsp[-2].reference); + } +#line 2401 "cod.tab.c" break; - case 60: -#line 721 "cod/cod.y" - { + case 60: /* conditional_expression: logical_or_expression QUESTION expression COLON conditional_expression */ +#line 735 "cod.y" + { (yyval.reference) = cod_new_conditional_operator(); - (yyval.reference)->node.conditional_operator.lx_srcpos = (yyvsp[(2) - (5)].info).lx_srcpos; - (yyval.reference)->node.conditional_operator.condition = (yyvsp[(1) - (5)].reference); - (yyval.reference)->node.conditional_operator.e1 = (yyvsp[(3) - (5)].reference); - (yyval.reference)->node.conditional_operator.e2 = (yyvsp[(5) - (5)].reference); - ;} + (yyval.reference)->node.conditional_operator.lx_srcpos = (yyvsp[-3].info).lx_srcpos; + (yyval.reference)->node.conditional_operator.condition = (yyvsp[-4].reference); + (yyval.reference)->node.conditional_operator.e1 = (yyvsp[-2].reference); + (yyval.reference)->node.conditional_operator.e2 = (yyvsp[0].reference); + } +#line 2413 "cod.tab.c" break; - case 61: -#line 732 "cod/cod.y" - { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_eq;;} + case 61: /* assignment_operator: ASSIGN */ +#line 746 "cod.y" + { (yyval.info) = (yyvsp[0].info); (yyval.info).op = op_eq;} +#line 2419 "cod.tab.c" break; - case 62: -#line 734 "cod/cod.y" - { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_mult;;} + case 62: /* assignment_operator: MUL_ASSIGN */ +#line 748 "cod.y" + { (yyval.info) = (yyvsp[0].info); (yyval.info).op = op_mult;} +#line 2425 "cod.tab.c" break; - case 63: -#line 736 "cod/cod.y" - { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_div;;} + case 63: /* assignment_operator: DIV_ASSIGN */ +#line 750 "cod.y" + { (yyval.info) = (yyvsp[0].info); (yyval.info).op = op_div;} +#line 2431 "cod.tab.c" break; - case 64: -#line 738 "cod/cod.y" - { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_modulus;;} + case 64: /* assignment_operator: MOD_ASSIGN */ +#line 752 "cod.y" + { (yyval.info) = (yyvsp[0].info); (yyval.info).op = op_modulus;} +#line 2437 "cod.tab.c" break; - case 65: -#line 740 "cod/cod.y" - { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_plus;;} + case 65: /* assignment_operator: ADD_ASSIGN */ +#line 754 "cod.y" + { (yyval.info) = (yyvsp[0].info); (yyval.info).op = op_plus;} +#line 2443 "cod.tab.c" break; - case 66: -#line 742 "cod/cod.y" - { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_minus;;} + case 66: /* assignment_operator: SUB_ASSIGN */ +#line 756 "cod.y" + { (yyval.info) = (yyvsp[0].info); (yyval.info).op = op_minus;} +#line 2449 "cod.tab.c" break; - case 67: -#line 744 "cod/cod.y" - { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_left_shift;;} + case 67: /* assignment_operator: LEFT_ASSIGN */ +#line 758 "cod.y" + { (yyval.info) = (yyvsp[0].info); (yyval.info).op = op_left_shift;} +#line 2455 "cod.tab.c" break; - case 68: -#line 746 "cod/cod.y" - { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_right_shift;;} + case 68: /* assignment_operator: RIGHT_ASSIGN */ +#line 760 "cod.y" + { (yyval.info) = (yyvsp[0].info); (yyval.info).op = op_right_shift;} +#line 2461 "cod.tab.c" break; - case 69: -#line 748 "cod/cod.y" - { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_arith_and;;} + case 69: /* assignment_operator: AND_ASSIGN */ +#line 762 "cod.y" + { (yyval.info) = (yyvsp[0].info); (yyval.info).op = op_arith_and;} +#line 2467 "cod.tab.c" break; - case 70: -#line 750 "cod/cod.y" - { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_arith_xor;;} + case 70: /* assignment_operator: XOR_ASSIGN */ +#line 764 "cod.y" + { (yyval.info) = (yyvsp[0].info); (yyval.info).op = op_arith_xor;} +#line 2473 "cod.tab.c" break; - case 71: -#line 752 "cod/cod.y" - { (yyval.info) = (yyvsp[(1) - (1)].info); (yyval.info).op = op_arith_or;;} + case 71: /* assignment_operator: OR_ASSIGN */ +#line 766 "cod.y" + { (yyval.info) = (yyvsp[0].info); (yyval.info).op = op_arith_or;} +#line 2479 "cod.tab.c" break; - case 72: -#line 757 "cod/cod.y" - { (yyval.reference) = (yyvsp[(1) - (1)].reference);;} + case 72: /* assignment_expression: conditional_expression */ +#line 771 "cod.y" + { (yyval.reference) = (yyvsp[0].reference);} +#line 2485 "cod.tab.c" break; - case 73: -#line 760 "cod/cod.y" - { + case 73: /* assignment_expression: unary_expression assignment_operator assignment_expression */ +#line 774 "cod.y" + { (yyval.reference) = cod_new_assignment_expression(); - (yyval.reference)->node.assignment_expression.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; - (yyval.reference)->node.assignment_expression.left = (yyvsp[(1) - (3)].reference); - (yyval.reference)->node.assignment_expression.right = (yyvsp[(3) - (3)].reference); - (yyval.reference)->node.assignment_expression.op = (yyvsp[(2) - (3)].info).op; - ;} + (yyval.reference)->node.assignment_expression.lx_srcpos = (yyvsp[-1].info).lx_srcpos; + (yyval.reference)->node.assignment_expression.left = (yyvsp[-2].reference); + (yyval.reference)->node.assignment_expression.right = (yyvsp[0].reference); + (yyval.reference)->node.assignment_expression.op = (yyvsp[-1].info).op; + } +#line 2497 "cod.tab.c" break; - case 74: -#line 771 "cod/cod.y" - {(yyval.reference) = (yyvsp[(1) - (1)].reference);;} + case 74: /* expression: assignment_expression */ +#line 785 "cod.y" + {(yyval.reference) = (yyvsp[0].reference);} +#line 2503 "cod.tab.c" break; - case 75: -#line 773 "cod/cod.y" - { + case 75: /* expression: expression COMMA assignment_expression */ +#line 787 "cod.y" + { (yyval.reference) = cod_new_comma_expression(); - (yyval.reference)->node.comma_expression.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; - (yyval.reference)->node.comma_expression.left = (yyvsp[(1) - (3)].reference); - (yyval.reference)->node.comma_expression.right = (yyvsp[(3) - (3)].reference); - ;} + (yyval.reference)->node.comma_expression.lx_srcpos = (yyvsp[-1].info).lx_srcpos; + (yyval.reference)->node.comma_expression.left = (yyvsp[-2].reference); + (yyval.reference)->node.comma_expression.right = (yyvsp[0].reference); + } +#line 2514 "cod.tab.c" break; - case 77: -#line 786 "cod/cod.y" - { + case 77: /* init_declarator_list: init_declarator */ +#line 800 "cod.y" + { (yyval.list) = malloc(sizeof(struct list_struct)); - (yyval.list)->node = (yyvsp[(1) - (1)].reference); + (yyval.list)->node = (yyvsp[0].reference); (yyval.list)->next = NULL; - ;} + } +#line 2524 "cod.tab.c" break; - case 78: -#line 791 "cod/cod.y" - { - sm_list tmp = (yyvsp[(1) - (3)].list); + case 78: /* init_declarator_list: init_declarator_list COMMA init_declarator */ +#line 805 "cod.y" + { + sm_list tmp = (yyvsp[-2].list); while (tmp->next != NULL) { tmp = tmp->next; } tmp->next = malloc(sizeof(struct list_struct)); tmp = tmp->next; - tmp->node = (yyvsp[(3) - (3)].reference); + tmp->node = (yyvsp[0].reference); tmp->next = NULL; - (yyval.list) = (yyvsp[(1) - (3)].list); - ;} + (yyval.list) = (yyvsp[-2].list); + } +#line 2540 "cod.tab.c" break; - case 79: -#line 810 "cod/cod.y" - { + case 79: /* $@1: %empty */ +#line 824 "cod.y" + { if (parsing_type) { - yyparse_value = (sm_ref) (yyvsp[(1) - (1)].list); + yyparse_value = (sm_ref) (yyvsp[0].list); YYACCEPT; } - ;} + } +#line 2551 "cod.tab.c" break; - case 80: -#line 817 "cod/cod.y" - { /* stop here if we're just doing a proc decl */ + case 80: /* @2: %empty */ +#line 831 "cod.y" + { /* stop here if we're just doing a proc decl */ if (parsing_param_spec) { - (yyval.reference) = (yyvsp[(3) - (3)].list)->node; + (yyval.reference) = (yyvsp[0].list)->node; if ((yyval.reference)->node_type == cod_declaration) { if ((yyval.reference)->node.declaration.type_spec == NULL) { - (yyval.reference)->node.declaration.type_spec = (yyvsp[(1) - (3)].list); + (yyval.reference)->node.declaration.type_spec = (yyvsp[-2].list); } else { /* * the pointer type list (with the declarator) * goes at the end */ - sm_list tmp = (yyvsp[(1) - (3)].list); + sm_list tmp = (yyvsp[-2].list); while (tmp->next != NULL) { tmp = tmp->next; } tmp->next = (yyval.reference)->node.declaration.type_spec; - (yyval.reference)->node.declaration.type_spec = (yyvsp[(1) - (3)].list); + (yyval.reference)->node.declaration.type_spec = (yyvsp[-2].list); } } else { printf("unexpected node in init_declarator\n"); cod_print((yyval.reference)); } - yyparse_value = (yyvsp[(3) - (3)].list)->node; - free((yyvsp[(3) - (3)].list)); + yyparse_value = (yyvsp[0].list)->node; + free((yyvsp[0].list)); YYACCEPT; } - ;} + } +#line 2583 "cod.tab.c" break; - case 81: -#line 845 "cod/cod.y" - { - (yyval.list) = (yyvsp[(3) - (5)].list); - sm_list dtmp = (yyvsp[(3) - (5)].list); + case 81: /* declaration: declaration_specifiers $@1 init_declarator_list @2 SEMI */ +#line 859 "cod.y" + { + (yyval.list) = (yyvsp[-2].list); + sm_list dtmp = (yyvsp[-2].list); while (dtmp) { sm_list type_spec; if (dtmp->next != NULL) { - type_spec = cod_dup_list((yyvsp[(1) - (5)].list)); + type_spec = cod_dup_list((yyvsp[-4].list)); } else { - type_spec = (yyvsp[(1) - (5)].list); + type_spec = (yyvsp[-4].list); } sm_ref decl = dtmp->node; if (decl->node_type == cod_declaration) { @@ -2787,281 +2637,312 @@ yyparse () } dtmp = dtmp->next; } - (void)(yyvsp[(4) - (5)].reference); - ;} + (void)(yyvsp[-1].reference); + } +#line 2643 "cod.tab.c" break; - case 82: -#line 900 "cod/cod.y" - { - (yyval.list) = (yyvsp[(1) - (2)].list); - ;} + case 82: /* declaration: declaration_specifiers SEMI */ +#line 914 "cod.y" + { + (yyval.list) = (yyvsp[-1].list); + } +#line 2651 "cod.tab.c" break; - case 83: -#line 906 "cod/cod.y" - { + case 83: /* declaration_specifiers: storage_class_specifier */ +#line 920 "cod.y" + { (yyval.list) = malloc(sizeof(struct list_struct)); - (yyval.list)->node = (yyvsp[(1) - (1)].reference); + (yyval.list)->node = (yyvsp[0].reference); (yyval.list)->next = NULL; - ;} + } +#line 2661 "cod.tab.c" break; - case 84: -#line 911 "cod/cod.y" - { + case 84: /* declaration_specifiers: storage_class_specifier declaration_specifiers */ +#line 925 "cod.y" + { sm_list tmp = malloc(sizeof(struct list_struct)); - tmp->node = (yyvsp[(1) - (2)].reference); - tmp->next = (yyvsp[(2) - (2)].list); + tmp->node = (yyvsp[-1].reference); + tmp->next = (yyvsp[0].list); (yyval.list) = tmp; - ;} + } +#line 2672 "cod.tab.c" break; - case 85: -#line 917 "cod/cod.y" - { + case 85: /* declaration_specifiers: type_specifier */ +#line 931 "cod.y" + { (yyval.list) = malloc(sizeof(struct list_struct)); - (yyval.list)->node = (yyvsp[(1) - (1)].reference); + (yyval.list)->node = (yyvsp[0].reference); (yyval.list)->next = NULL; - ;} + } +#line 2682 "cod.tab.c" break; - case 86: -#line 922 "cod/cod.y" - { + case 86: /* declaration_specifiers: type_specifier declaration_specifiers */ +#line 936 "cod.y" + { sm_list tmp = malloc(sizeof(struct list_struct)); - tmp->node = (yyvsp[(1) - (2)].reference); - tmp->next = (yyvsp[(2) - (2)].list); + tmp->node = (yyvsp[-1].reference); + tmp->next = (yyvsp[0].list); (yyval.list) = tmp; - ;} + } +#line 2693 "cod.tab.c" break; - case 87: -#line 928 "cod/cod.y" - { + case 87: /* declaration_specifiers: type_qualifier */ +#line 942 "cod.y" + { (yyval.list) = malloc(sizeof(struct list_struct)); - (yyval.list)->node = (yyvsp[(1) - (1)].reference); + (yyval.list)->node = (yyvsp[0].reference); (yyval.list)->next = NULL; - ;} + } +#line 2703 "cod.tab.c" break; - case 88: -#line 933 "cod/cod.y" - { + case 88: /* declaration_specifiers: type_qualifier declaration_specifiers */ +#line 947 "cod.y" + { sm_list tmp = malloc(sizeof(struct list_struct)); - tmp->node = (yyvsp[(1) - (2)].reference); - tmp->next = (yyvsp[(2) - (2)].list); + tmp->node = (yyvsp[-1].reference); + tmp->next = (yyvsp[0].list); (yyval.list) = tmp; - ;} + } +#line 2714 "cod.tab.c" break; - case 90: -#line 944 "cod/cod.y" - { - if ((yyvsp[(1) - (3)].reference)->node_type == cod_declaration) { - (yyvsp[(1) - (3)].reference)->node.declaration.init_value = (yyvsp[(3) - (3)].reference); - } else if ((yyvsp[(1) - (3)].reference)->node_type == cod_array_type_decl) { - sm_ref tmp = (yyvsp[(1) - (3)].reference)->node.array_type_decl.element_ref; + case 90: /* init_declarator: declarator ASSIGN initializer */ +#line 958 "cod.y" + { + if ((yyvsp[-2].reference)->node_type == cod_declaration) { + (yyvsp[-2].reference)->node.declaration.init_value = (yyvsp[0].reference); + } else if ((yyvsp[-2].reference)->node_type == cod_array_type_decl) { + sm_ref tmp = (yyvsp[-2].reference)->node.array_type_decl.element_ref; while (tmp->node_type == cod_array_type_decl) { tmp = tmp->node.array_type_decl.element_ref; } assert(tmp->node_type == cod_declaration); - tmp->node.declaration.init_value = (yyvsp[(3) - (3)].reference); + tmp->node.declaration.init_value = (yyvsp[0].reference); } - ;} + } +#line 2731 "cod.tab.c" break; - case 91: -#line 959 "cod/cod.y" - { + case 91: /* storage_class_specifier: TYPEDEF */ +#line 973 "cod.y" + { (yyval.reference) = cod_new_type_specifier(); - (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.type_specifier.token = TYPEDEF; - ;} + } +#line 2741 "cod.tab.c" break; - case 92: -#line 964 "cod/cod.y" - { + case 92: /* storage_class_specifier: STATIC */ +#line 978 "cod.y" + { (yyval.reference) = cod_new_type_specifier(); - (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.type_specifier.token = STATIC; - ;} + } +#line 2751 "cod.tab.c" break; - case 93: -#line 969 "cod/cod.y" - { + case 93: /* storage_class_specifier: EXTERN_TOKEN */ +#line 983 "cod.y" + { (yyval.reference) = cod_new_type_specifier(); - (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.type_specifier.token = EXTERN_TOKEN; - ;} + } +#line 2761 "cod.tab.c" break; - case 94: -#line 978 "cod/cod.y" - { + case 94: /* type_specifier: CHAR */ +#line 992 "cod.y" + { (yyval.reference) = cod_new_type_specifier(); - (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.type_specifier.token = CHAR; - ;} + } +#line 2771 "cod.tab.c" break; - case 95: -#line 983 "cod/cod.y" - { + case 95: /* type_specifier: SHORT */ +#line 997 "cod.y" + { (yyval.reference) = cod_new_type_specifier(); - (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.type_specifier.token = SHORT; - ;} + } +#line 2781 "cod.tab.c" break; - case 96: -#line 988 "cod/cod.y" - { + case 96: /* type_specifier: INT */ +#line 1002 "cod.y" + { (yyval.reference) = cod_new_type_specifier(); - (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.type_specifier.token = INT; - ;} + } +#line 2791 "cod.tab.c" break; - case 97: -#line 993 "cod/cod.y" - { + case 97: /* type_specifier: LONG */ +#line 1007 "cod.y" + { (yyval.reference) = cod_new_type_specifier(); - (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.type_specifier.token = LONG; - ;} + } +#line 2801 "cod.tab.c" break; - case 98: -#line 998 "cod/cod.y" - { + case 98: /* type_specifier: FLOAT */ +#line 1012 "cod.y" + { (yyval.reference) = cod_new_type_specifier(); - (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.type_specifier.token = FLOAT; - ;} + } +#line 2811 "cod.tab.c" break; - case 99: -#line 1003 "cod/cod.y" - { + case 99: /* type_specifier: DOUBLE */ +#line 1017 "cod.y" + { (yyval.reference) = cod_new_type_specifier(); - (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.type_specifier.token = DOUBLE; - ;} + } +#line 2821 "cod.tab.c" break; - case 100: -#line 1008 "cod/cod.y" - { + case 100: /* type_specifier: VOID */ +#line 1022 "cod.y" + { (yyval.reference) = cod_new_type_specifier(); - (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.type_specifier.token = VOID; - ;} + } +#line 2831 "cod.tab.c" break; - case 101: -#line 1013 "cod/cod.y" - { + case 101: /* type_specifier: SIGNED */ +#line 1027 "cod.y" + { (yyval.reference) = cod_new_type_specifier(); - (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.type_specifier.token = SIGNED; - ;} + } +#line 2841 "cod.tab.c" break; - case 102: -#line 1018 "cod/cod.y" - { + case 102: /* type_specifier: UNSIGNED */ +#line 1032 "cod.y" + { (yyval.reference) = cod_new_type_specifier(); - (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.type_specifier.token = UNSIGNED; - ;} + } +#line 2851 "cod.tab.c" break; - case 103: -#line 1023 "cod/cod.y" - { + case 103: /* type_specifier: STRING */ +#line 1037 "cod.y" + { (yyval.reference) = cod_new_type_specifier(); - (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.type_specifier.token = STRING; - ;} + } +#line 2861 "cod.tab.c" break; - case 104: -#line 1028 "cod/cod.y" - { + case 104: /* type_specifier: type_id */ +#line 1042 "cod.y" + { (yyval.reference) = cod_new_identifier(); - (yyval.reference)->node.identifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; - (yyval.reference)->node.identifier.id = (yyvsp[(1) - (1)].info).string; - ;} + (yyval.reference)->node.identifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; + (yyval.reference)->node.identifier.id = (yyvsp[0].info).string; + } +#line 2871 "cod.tab.c" break; - case 105: -#line 1033 "cod/cod.y" - { - (yyval.reference) = (yyvsp[(1) - (1)].reference); - ;} + case 105: /* type_specifier: struct_or_union_specifier */ +#line 1047 "cod.y" + { + (yyval.reference) = (yyvsp[0].reference); + } +#line 2879 "cod.tab.c" break; - case 106: -#line 1036 "cod/cod.y" - { - (yyval.reference) = (yyvsp[(1) - (1)].reference); - ;} + case 106: /* type_specifier: enum_specifier */ +#line 1050 "cod.y" + { + (yyval.reference) = (yyvsp[0].reference); + } +#line 2887 "cod.tab.c" break; - case 107: -#line 1042 "cod/cod.y" - { - (yyval.reference) = cod_build_parsed_type_node(yycontext, (yyvsp[(2) - (5)].info).string, (yyvsp[(4) - (5)].list)); - ;} + case 107: /* struct_or_union_specifier: struct_or_union identifier_ref LCURLY struct_declaration_list RCURLY */ +#line 1056 "cod.y" + { + (yyval.reference) = cod_build_parsed_type_node(yycontext, (yyvsp[-3].info).string, (yyvsp[-1].list)); + } +#line 2895 "cod.tab.c" break; - case 108: -#line 1045 "cod/cod.y" - { - (yyval.reference) = cod_build_parsed_type_node(yycontext, strdup("anon"), (yyvsp[(3) - (4)].list)); - ;} + case 108: /* struct_or_union_specifier: struct_or_union LCURLY struct_declaration_list RCURLY */ +#line 1059 "cod.y" + { + (yyval.reference) = cod_build_parsed_type_node(yycontext, strdup("anon"), (yyvsp[-1].list)); + } +#line 2903 "cod.tab.c" break; - case 109: -#line 1048 "cod/cod.y" - { - (yyval.reference) = cod_build_parsed_type_node(yycontext, (yyvsp[(2) - (2)].info).string, NULL); - ;} + case 109: /* struct_or_union_specifier: struct_or_union identifier_ref */ +#line 1062 "cod.y" + { + (yyval.reference) = cod_build_parsed_type_node(yycontext, (yyvsp[0].info).string, NULL); + } +#line 2911 "cod.tab.c" break; - case 111: -#line 1055 "cod/cod.y" - { + case 111: /* struct_or_union: UNION */ +#line 1069 "cod.y" + { yyerror("UNIONs not supported!"); - ;} + } +#line 2919 "cod.tab.c" break; - case 113: -#line 1062 "cod/cod.y" - { - sm_list tmp = (yyvsp[(1) - (2)].list); + case 113: /* struct_declaration_list: struct_declaration_list struct_declaration */ +#line 1076 "cod.y" + { + sm_list tmp = (yyvsp[-1].list); while (tmp->next != NULL) { tmp = tmp->next; } - tmp->next =(yyvsp[(2) - (2)].list); - (yyval.list) = (yyvsp[(1) - (2)].list); - ;} + tmp->next =(yyvsp[0].list); + (yyval.list) = (yyvsp[-1].list); + } +#line 2932 "cod.tab.c" break; - case 114: -#line 1074 "cod/cod.y" - { ;} + case 114: /* struct_declaration: specifier_qualifier_list SEMI */ +#line 1088 "cod.y" + { } +#line 2938 "cod.tab.c" break; - case 115: -#line 1075 "cod/cod.y" - { - sm_list type_spec = (yyvsp[(1) - (3)].list); - sm_list decl_list = (yyvsp[(2) - (3)].list); - (yyval.list) = (yyvsp[(2) - (3)].list); + case 115: /* struct_declaration: specifier_qualifier_list struct_declarator_list SEMI */ +#line 1089 "cod.y" + { + sm_list type_spec = (yyvsp[-2].list); + sm_list decl_list = (yyvsp[-1].list); + (yyval.list) = (yyvsp[-1].list); /******** GSE This isn't right. Reusing potentially modified type spec */ while (decl_list != NULL) { sm_ref decl = decl_list->node; @@ -3073,7 +2954,7 @@ yyparse () * the pointer type list (with the declarator) * goes at the end */ - sm_list tmp = (yyvsp[(1) - (3)].list); + sm_list tmp = (yyvsp[-2].list); while (tmp->next != NULL) { tmp = tmp->next; } @@ -3104,402 +2985,436 @@ yyparse () type_spec = cod_dup_list(type_spec); } } - ;} + } +#line 2990 "cod.tab.c" break; - case 116: -#line 1126 "cod/cod.y" - { + case 116: /* struct_declarator_list: struct_declarator */ +#line 1140 "cod.y" + { (yyval.list) = malloc(sizeof(struct list_struct)); - (yyval.list)->node = (yyvsp[(1) - (1)].reference); + (yyval.list)->node = (yyvsp[0].reference); (yyval.list)->next = NULL; - ;} + } +#line 3000 "cod.tab.c" break; - case 117: -#line 1131 "cod/cod.y" - { - sm_list tmp = (yyvsp[(1) - (3)].list); + case 117: /* struct_declarator_list: struct_declarator_list COMMA struct_declarator */ +#line 1145 "cod.y" + { + sm_list tmp = (yyvsp[-2].list); while (tmp->next != NULL) { tmp = tmp->next; } tmp->next = malloc(sizeof(struct list_struct)); - tmp->next->node = (yyvsp[(3) - (3)].reference); + tmp->next->node = (yyvsp[0].reference); tmp->next->next = NULL; - (yyval.list) = (yyvsp[(1) - (3)].list); - ;} + (yyval.list) = (yyvsp[-2].list); + } +#line 3015 "cod.tab.c" break; - case 119: -#line 1146 "cod/cod.y" - { + case 119: /* specifier_qualifier_list: type_specifier specifier_qualifier_list */ +#line 1160 "cod.y" + { sm_list tmp = malloc(sizeof(struct list_struct)); - tmp->node = (yyvsp[(1) - (2)].reference); - tmp->next = (yyvsp[(2) - (2)].list); + tmp->node = (yyvsp[-1].reference); + tmp->next = (yyvsp[0].list); (yyval.list) = tmp; - ;} + } +#line 3026 "cod.tab.c" break; - case 120: -#line 1152 "cod/cod.y" - { + case 120: /* specifier_qualifier_list: type_specifier */ +#line 1166 "cod.y" + { (yyval.list) = malloc(sizeof(struct list_struct)); - (yyval.list)->node = (yyvsp[(1) - (1)].reference); + (yyval.list)->node = (yyvsp[0].reference); (yyval.list)->next = NULL; - ;} + } +#line 3036 "cod.tab.c" break; - case 121: -#line 1157 "cod/cod.y" - { + case 121: /* specifier_qualifier_list: type_qualifier specifier_qualifier_list */ +#line 1171 "cod.y" + { sm_list tmp = malloc(sizeof(struct list_struct)); - tmp->node = (yyvsp[(1) - (2)].reference); - tmp->next = (yyvsp[(2) - (2)].list); + tmp->node = (yyvsp[-1].reference); + tmp->next = (yyvsp[0].list); (yyval.list) = tmp; - ;} + } +#line 3047 "cod.tab.c" break; - case 122: -#line 1163 "cod/cod.y" - { + case 122: /* specifier_qualifier_list: type_qualifier */ +#line 1177 "cod.y" + { (yyval.list) = malloc(sizeof(struct list_struct)); - (yyval.list)->node = (yyvsp[(1) - (1)].reference); + (yyval.list)->node = (yyvsp[0].reference); (yyval.list)->next = NULL; - ;} + } +#line 3057 "cod.tab.c" break; - case 123: -#line 1171 "cod/cod.y" - { + case 123: /* enum_specifier: ENUM LCURLY enumerator_list RCURLY */ +#line 1185 "cod.y" + { (yyval.reference) = cod_new_enum_type_decl(); (yyval.reference)->node.enum_type_decl.id = gen_anon(); - (yyval.reference)->node.enum_type_decl.enums = (yyvsp[(3) - (4)].list); - (yyval.reference)->node.enum_type_decl.lx_srcpos = (yyvsp[(1) - (4)].info).lx_srcpos; + (yyval.reference)->node.enum_type_decl.enums = (yyvsp[-1].list); + (yyval.reference)->node.enum_type_decl.lx_srcpos = (yyvsp[-3].info).lx_srcpos; // cod_add_defined_type(decl->node.declaration.id, yycontext); - ;} + } +#line 3069 "cod.tab.c" break; - case 124: -#line 1178 "cod/cod.y" - { + case 124: /* enum_specifier: ENUM LCURLY enumerator_list COMMA RCURLY */ +#line 1192 "cod.y" + { (yyval.reference) = cod_new_enum_type_decl(); (yyval.reference)->node.enum_type_decl.id = gen_anon(); - (yyval.reference)->node.enum_type_decl.enums = (yyvsp[(3) - (5)].list); - (yyval.reference)->node.enum_type_decl.lx_srcpos = (yyvsp[(1) - (5)].info).lx_srcpos; + (yyval.reference)->node.enum_type_decl.enums = (yyvsp[-2].list); + (yyval.reference)->node.enum_type_decl.lx_srcpos = (yyvsp[-4].info).lx_srcpos; // cod_add_defined_type(decl->node.declaration.id, yycontext); - ;} + } +#line 3081 "cod.tab.c" break; - case 125: -#line 1185 "cod/cod.y" - { + case 125: /* enum_specifier: ENUM identifier_ref LCURLY enumerator_list RCURLY */ +#line 1199 "cod.y" + { (yyval.reference) = cod_new_enum_type_decl(); - (yyval.reference)->node.enum_type_decl.id = (yyvsp[(2) - (5)].info).string; - (yyval.reference)->node.enum_type_decl.enums = (yyvsp[(4) - (5)].list); - (yyval.reference)->node.enum_type_decl.lx_srcpos = (yyvsp[(1) - (5)].info).lx_srcpos; + (yyval.reference)->node.enum_type_decl.id = (yyvsp[-3].info).string; + (yyval.reference)->node.enum_type_decl.enums = (yyvsp[-1].list); + (yyval.reference)->node.enum_type_decl.lx_srcpos = (yyvsp[-4].info).lx_srcpos; // cod_add_defined_type(decl->node.declaration.id, yycontext); - ;} + } +#line 3093 "cod.tab.c" break; - case 126: -#line 1192 "cod/cod.y" - { + case 126: /* enum_specifier: ENUM identifier_ref LCURLY enumerator_list COMMA RCURLY */ +#line 1206 "cod.y" + { (yyval.reference) = cod_new_enum_type_decl(); - (yyval.reference)->node.enum_type_decl.id = (yyvsp[(2) - (6)].info).string; - (yyval.reference)->node.enum_type_decl.enums = (yyvsp[(4) - (6)].list); - (yyval.reference)->node.enum_type_decl.lx_srcpos = (yyvsp[(1) - (6)].info).lx_srcpos; + (yyval.reference)->node.enum_type_decl.id = (yyvsp[-4].info).string; + (yyval.reference)->node.enum_type_decl.enums = (yyvsp[-2].list); + (yyval.reference)->node.enum_type_decl.lx_srcpos = (yyvsp[-5].info).lx_srcpos; // cod_add_defined_type(decl->node.declaration.id, yycontext); - ;} + } +#line 3105 "cod.tab.c" break; - case 127: -#line 1199 "cod/cod.y" - { + case 127: /* enum_specifier: ENUM identifier_ref */ +#line 1213 "cod.y" + { (yyval.reference) = cod_new_enum_type_decl(); - (yyval.reference)->node.enum_type_decl.id = (yyvsp[(2) - (2)].info).string; + (yyval.reference)->node.enum_type_decl.id = (yyvsp[0].info).string; (yyval.reference)->node.enum_type_decl.enums = NULL; - (yyval.reference)->node.enum_type_decl.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; + (yyval.reference)->node.enum_type_decl.lx_srcpos = (yyvsp[-1].info).lx_srcpos; // cod_add_defined_type(decl->node.declaration.id, yycontext); - ;} + } +#line 3117 "cod.tab.c" break; - case 128: -#line 1209 "cod/cod.y" - { + case 128: /* enumerator_list: enumerator */ +#line 1223 "cod.y" + { sm_list tmp = malloc(sizeof(struct list_struct)); - tmp->node = (yyvsp[(1) - (1)].reference); + tmp->node = (yyvsp[0].reference); tmp->next = NULL; (yyval.list) = tmp; - ;} + } +#line 3128 "cod.tab.c" break; - case 129: -#line 1215 "cod/cod.y" - { + case 129: /* enumerator_list: enumerator_list COMMA enumerator */ +#line 1229 "cod.y" + { sm_list tmp = malloc(sizeof(struct list_struct)); - tmp->node = (yyvsp[(3) - (3)].reference); - tmp->next = (yyvsp[(1) - (3)].list); + tmp->node = (yyvsp[0].reference); + tmp->next = (yyvsp[-2].list); (yyval.list) = tmp; - ;} + } +#line 3139 "cod.tab.c" break; - case 130: -#line 1225 "cod/cod.y" - { + case 130: /* enumerator: identifier_ref ASSIGN constant_expression */ +#line 1239 "cod.y" + { (yyval.reference) = cod_new_enumerator(); - (yyval.reference)->node.enumerator.id = (yyvsp[(1) - (3)].info).string; - (yyval.reference)->node.enumerator.const_expression = (yyvsp[(3) - (3)].reference); - ;} + (yyval.reference)->node.enumerator.id = (yyvsp[-2].info).string; + (yyval.reference)->node.enumerator.const_expression = (yyvsp[0].reference); + } +#line 3149 "cod.tab.c" break; - case 131: -#line 1231 "cod/cod.y" - { + case 131: /* enumerator: identifier_ref */ +#line 1245 "cod.y" + { (yyval.reference) = cod_new_enumerator(); - (yyval.reference)->node.enumerator.id = (yyvsp[(1) - (1)].info).string; + (yyval.reference)->node.enumerator.id = (yyvsp[0].info).string; (yyval.reference)->node.enumerator.const_expression = NULL; - ;} + } +#line 3159 "cod.tab.c" break; - case 132: -#line 1239 "cod/cod.y" - { + case 132: /* type_qualifier: CONST */ +#line 1253 "cod.y" + { (yyval.reference) = cod_new_type_specifier(); - (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + (yyval.reference)->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.type_specifier.token = CONST; - ;} + } +#line 3169 "cod.tab.c" break; - case 134: -#line 1249 "cod/cod.y" - { - (yyval.reference) = (yyvsp[(2) - (2)].reference); + case 134: /* declarator: pointer direct_declarator */ +#line 1263 "cod.y" + { + (yyval.reference) = (yyvsp[0].reference); if ((yyval.reference)->node_type == cod_declaration) { - (yyval.reference)->node.declaration.type_spec = (yyvsp[(1) - (2)].list); + (yyval.reference)->node.declaration.type_spec = (yyvsp[-1].list); } else if ((yyval.reference)->node_type == cod_array_type_decl) { - (yyval.reference)->node.array_type_decl.type_spec = (yyvsp[(1) - (2)].list); + (yyval.reference)->node.array_type_decl.type_spec = (yyvsp[-1].list); } else { printf("Unknown direct_declarator entry\n"); cod_print((yyval.reference)); } - ;} + } +#line 3185 "cod.tab.c" break; - case 135: -#line 1263 "cod/cod.y" - { + case 135: /* direct_declarator: identifier_ref */ +#line 1277 "cod.y" + { (yyval.reference) = cod_new_declaration(); (yyval.reference)->node.declaration.param_num = -1; - (yyval.reference)->node.declaration.id = (yyvsp[(1) - (1)].info).string; + (yyval.reference)->node.declaration.id = (yyvsp[0].info).string; (yyval.reference)->node.declaration.init_value = NULL; - (yyval.reference)->node.declaration.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + (yyval.reference)->node.declaration.lx_srcpos = (yyvsp[0].info).lx_srcpos; (yyval.reference)->node.declaration.is_subroutine = 0; (yyval.reference)->node.declaration.params = NULL; - ;} + } +#line 3199 "cod.tab.c" break; - case 136: -#line 1272 "cod/cod.y" - { - (yyval.reference) = (yyvsp[(2) - (3)].reference); - ;} + case 136: /* direct_declarator: LPAREN declarator RPAREN */ +#line 1286 "cod.y" + { + (yyval.reference) = (yyvsp[-1].reference); + } +#line 3207 "cod.tab.c" break; - case 137: -#line 1275 "cod/cod.y" - { + case 137: /* direct_declarator: identifier_ref LPAREN parameter_type_list RPAREN */ +#line 1289 "cod.y" + { (yyval.reference) = cod_new_declaration(); (yyval.reference)->node.declaration.param_num = -1; - (yyval.reference)->node.declaration.id = (yyvsp[(1) - (4)].info).string; + (yyval.reference)->node.declaration.id = (yyvsp[-3].info).string; (yyval.reference)->node.declaration.init_value = NULL; - (yyval.reference)->node.declaration.lx_srcpos = (yyvsp[(1) - (4)].info).lx_srcpos; + (yyval.reference)->node.declaration.lx_srcpos = (yyvsp[-3].info).lx_srcpos; (yyval.reference)->node.declaration.is_subroutine = 1; - (yyval.reference)->node.declaration.params = (yyvsp[(3) - (4)].list); - ;} + (yyval.reference)->node.declaration.params = (yyvsp[-1].list); + } +#line 3221 "cod.tab.c" break; - case 138: -#line 1284 "cod/cod.y" - { + case 138: /* direct_declarator: identifier_ref LPAREN RPAREN */ +#line 1298 "cod.y" + { (yyval.reference) = cod_new_declaration(); (yyval.reference)->node.declaration.param_num = -1; - (yyval.reference)->node.declaration.id = (yyvsp[(1) - (3)].info).string; + (yyval.reference)->node.declaration.id = (yyvsp[-2].info).string; (yyval.reference)->node.declaration.init_value = NULL; - (yyval.reference)->node.declaration.lx_srcpos = (yyvsp[(1) - (3)].info).lx_srcpos; + (yyval.reference)->node.declaration.lx_srcpos = (yyvsp[-2].info).lx_srcpos; (yyval.reference)->node.declaration.is_subroutine = 1; (yyval.reference)->node.declaration.params = NULL; - ;} + } +#line 3235 "cod.tab.c" break; - case 139: -#line 1293 "cod/cod.y" - { + case 139: /* direct_declarator: direct_declarator LBRACKET constant_expression RBRACKET */ +#line 1307 "cod.y" + { (yyval.reference) = cod_new_array_type_decl(); - (yyval.reference)->node.array_type_decl.lx_srcpos = (yyvsp[(2) - (4)].info).lx_srcpos; - (yyval.reference)->node.array_type_decl.size_expr = (yyvsp[(3) - (4)].reference); - (yyval.reference)->node.array_type_decl.element_ref = (yyvsp[(1) - (4)].reference); + (yyval.reference)->node.array_type_decl.lx_srcpos = (yyvsp[-2].info).lx_srcpos; + (yyval.reference)->node.array_type_decl.size_expr = (yyvsp[-1].reference); + (yyval.reference)->node.array_type_decl.element_ref = (yyvsp[-3].reference); (yyval.reference)->node.array_type_decl.sm_dynamic_size = NULL; - ;} + } +#line 3247 "cod.tab.c" break; - case 140: -#line 1300 "cod/cod.y" - { + case 140: /* direct_declarator: direct_declarator LBRACKET RBRACKET */ +#line 1314 "cod.y" + { (yyval.reference) = cod_new_array_type_decl(); - (yyval.reference)->node.array_type_decl.lx_srcpos = (yyvsp[(2) - (3)].info).lx_srcpos; + (yyval.reference)->node.array_type_decl.lx_srcpos = (yyvsp[-1].info).lx_srcpos; (yyval.reference)->node.array_type_decl.size_expr = NULL; - (yyval.reference)->node.array_type_decl.element_ref = (yyvsp[(1) - (3)].reference); + (yyval.reference)->node.array_type_decl.element_ref = (yyvsp[-2].reference); (yyval.reference)->node.array_type_decl.sm_dynamic_size = NULL; - ;} + } +#line 3259 "cod.tab.c" break; - case 141: -#line 1310 "cod/cod.y" - { + case 141: /* pointer: STAR */ +#line 1324 "cod.y" + { sm_ref star = cod_new_type_specifier(); - star->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + star->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; star->node.type_specifier.token = STAR; (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = star; (yyval.list)->next = NULL; - ;} + } +#line 3272 "cod.tab.c" break; - case 142: -#line 1318 "cod/cod.y" - { + case 142: /* pointer: STAR type_qualifier_list */ +#line 1332 "cod.y" + { sm_ref star = cod_new_type_specifier(); - star->node.type_specifier.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; + star->node.type_specifier.lx_srcpos = (yyvsp[-1].info).lx_srcpos; star->node.type_specifier.token = STAR; (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = star; - (yyval.list)->next = (yyvsp[(2) - (2)].list); - ;} + (yyval.list)->next = (yyvsp[0].list); + } +#line 3285 "cod.tab.c" break; - case 143: -#line 1326 "cod/cod.y" - { + case 143: /* pointer: STAR pointer */ +#line 1340 "cod.y" + { sm_ref star = cod_new_type_specifier(); - star->node.type_specifier.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; + star->node.type_specifier.lx_srcpos = (yyvsp[-1].info).lx_srcpos; star->node.type_specifier.token = STAR; (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = star; - (yyval.list)->next = (yyvsp[(2) - (2)].list); - ;} + (yyval.list)->next = (yyvsp[0].list); + } +#line 3298 "cod.tab.c" break; - case 144: -#line 1334 "cod/cod.y" - { - sm_list tmp = (yyvsp[(2) - (3)].list); + case 144: /* pointer: STAR type_qualifier_list pointer */ +#line 1348 "cod.y" + { + sm_list tmp = (yyvsp[-1].list); sm_ref star = cod_new_type_specifier(); - star->node.type_specifier.lx_srcpos = (yyvsp[(1) - (3)].info).lx_srcpos; + star->node.type_specifier.lx_srcpos = (yyvsp[-2].info).lx_srcpos; star->node.type_specifier.token = STAR; while (tmp->next != NULL) { tmp = tmp->next; } - tmp->next = (yyvsp[(3) - (3)].list); + tmp->next = (yyvsp[0].list); (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = star; - (yyval.list)->next = (yyvsp[(2) - (3)].list); - ;} + (yyval.list)->next = (yyvsp[-1].list); + } +#line 3317 "cod.tab.c" break; - case 145: -#line 1348 "cod/cod.y" - { + case 145: /* pointer: AT */ +#line 1362 "cod.y" + { sm_ref star = cod_new_type_specifier(); if(!cod_segmented_pointers) { yyerror("Segmented pointers disabled!"); } - star->node.type_specifier.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; + star->node.type_specifier.lx_srcpos = (yyvsp[0].info).lx_srcpos; star->node.type_specifier.token = AT; (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = star; (yyval.list)->next = NULL; - ;} + } +#line 3333 "cod.tab.c" break; - case 146: -#line 1359 "cod/cod.y" - { + case 146: /* pointer: AT type_qualifier_list */ +#line 1373 "cod.y" + { sm_ref star = cod_new_type_specifier(); if(!cod_segmented_pointers) { yyerror("Segmented pointers disabled!"); } - star->node.type_specifier.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; + star->node.type_specifier.lx_srcpos = (yyvsp[-1].info).lx_srcpos; star->node.type_specifier.token = AT; (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = star; - (yyval.list)->next = (yyvsp[(2) - (2)].list); - ;} + (yyval.list)->next = (yyvsp[0].list); + } +#line 3349 "cod.tab.c" break; - case 147: -#line 1370 "cod/cod.y" - { + case 147: /* pointer: AT pointer */ +#line 1384 "cod.y" + { sm_ref star = cod_new_type_specifier(); if(!cod_segmented_pointers) { yyerror("Segmented pointers disabled!"); } - star->node.type_specifier.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; + star->node.type_specifier.lx_srcpos = (yyvsp[-1].info).lx_srcpos; star->node.type_specifier.token = AT; (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = star; - (yyval.list)->next = (yyvsp[(2) - (2)].list); - ;} + (yyval.list)->next = (yyvsp[0].list); + } +#line 3365 "cod.tab.c" break; - case 148: -#line 1381 "cod/cod.y" - { - sm_list tmp = (yyvsp[(2) - (3)].list); + case 148: /* pointer: AT type_qualifier_list pointer */ +#line 1395 "cod.y" + { + sm_list tmp = (yyvsp[-1].list); sm_ref star = cod_new_type_specifier(); if(!cod_segmented_pointers) { yyerror("Segmented pointers disabled!"); } - star->node.type_specifier.lx_srcpos = (yyvsp[(1) - (3)].info).lx_srcpos; + star->node.type_specifier.lx_srcpos = (yyvsp[-2].info).lx_srcpos; star->node.type_specifier.token = AT; while (tmp->next != NULL) { tmp = tmp->next; } - tmp->next = (yyvsp[(3) - (3)].list); + tmp->next = (yyvsp[0].list); (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = star; - (yyval.list)->next = (yyvsp[(2) - (3)].list); - ;} + (yyval.list)->next = (yyvsp[-1].list); + } +#line 3387 "cod.tab.c" break; - case 149: -#line 1401 "cod/cod.y" - { + case 149: /* type_qualifier_list: type_qualifier */ +#line 1415 "cod.y" + { (yyval.list) = malloc(sizeof(struct list_struct)); - (yyval.list)->node = (yyvsp[(1) - (1)].reference); + (yyval.list)->node = (yyvsp[0].reference); (yyval.list)->next = NULL; - ;} + } +#line 3397 "cod.tab.c" break; - case 150: -#line 1406 "cod/cod.y" - { - sm_list tmp = (yyvsp[(1) - (2)].list); + case 150: /* type_qualifier_list: type_qualifier_list type_qualifier */ +#line 1420 "cod.y" + { + sm_list tmp = (yyvsp[-1].list); while (tmp->next != NULL) { tmp = tmp->next; } tmp->next = malloc(sizeof(struct list_struct)); - tmp->next->node = (yyvsp[(2) - (2)].reference); + tmp->next->node = (yyvsp[0].reference); tmp->next->next = NULL; - (yyval.list) = (yyvsp[(1) - (2)].list); - ;} + (yyval.list) = (yyvsp[-1].list); + } +#line 3412 "cod.tab.c" break; - case 152: -#line 1420 "cod/cod.y" - { - sm_list tmp = (yyvsp[(1) - (3)].list); + case 152: /* parameter_type_list: parameter_list COMMA DOTDOTDOT */ +#line 1434 "cod.y" + { + sm_list tmp = (yyvsp[-2].list); sm_ref id = cod_new_declaration(); while (tmp->next != NULL) { tmp = tmp->next; @@ -3508,585 +3423,606 @@ yyparse () tmp->next->node = id; tmp->next->next = NULL; id->node.declaration.id = strdup("..."); - (yyval.list) = (yyvsp[(1) - (3)].list); - ;} + (yyval.list) = (yyvsp[-2].list); + } +#line 3429 "cod.tab.c" break; - case 153: -#line 1435 "cod/cod.y" - { + case 153: /* parameter_list: parameter_declaration */ +#line 1449 "cod.y" + { (yyval.list) = malloc(sizeof(struct list_struct)); - (yyval.list)->node = (yyvsp[(1) - (1)].reference); + (yyval.list)->node = (yyvsp[0].reference); (yyval.list)->next = NULL; - ;} + } +#line 3439 "cod.tab.c" break; - case 154: -#line 1441 "cod/cod.y" - { - sm_list tmp = (yyvsp[(1) - (3)].list); + case 154: /* parameter_list: parameter_list COMMA parameter_declaration */ +#line 1455 "cod.y" + { + sm_list tmp = (yyvsp[-2].list); while (tmp->next != NULL) { tmp = tmp->next; } tmp->next = malloc(sizeof(struct list_struct)); - tmp->next->node = (yyvsp[(3) - (3)].reference); + tmp->next->node = (yyvsp[0].reference); tmp->next->next = NULL; - (yyval.list) = (yyvsp[(1) - (3)].list); - ;} + (yyval.list) = (yyvsp[-2].list); + } +#line 3454 "cod.tab.c" break; - case 155: -#line 1456 "cod/cod.y" - { + case 155: /* parameter_declaration: declaration_specifiers */ +#line 1470 "cod.y" + { (yyval.reference) = cod_new_declaration(); (yyval.reference)->node.declaration.param_num = -1; (yyval.reference)->node.declaration.id = gen_anon(); (yyval.reference)->node.declaration.init_value = NULL; (yyval.reference)->node.declaration.is_subroutine = 0; (yyval.reference)->node.declaration.params = NULL; - (yyval.reference)->node.declaration.type_spec = (yyvsp[(1) - (1)].list); - ;} + (yyval.reference)->node.declaration.type_spec = (yyvsp[0].list); + } +#line 3468 "cod.tab.c" break; - case 156: -#line 1465 "cod/cod.y" - { - (yyval.reference) = (yyvsp[(2) - (2)].reference); + case 156: /* parameter_declaration: declaration_specifiers declarator */ +#line 1479 "cod.y" + { + (yyval.reference) = (yyvsp[0].reference); if ((yyval.reference)->node_type == cod_declaration) { (yyval.reference)->node.declaration.static_var = 0; if ((yyval.reference)->node.declaration.type_spec == NULL) { - (yyval.reference)->node.declaration.type_spec = (yyvsp[(1) - (2)].list); + (yyval.reference)->node.declaration.type_spec = (yyvsp[-1].list); } else { /* * the pointer type list (with the declarator) * goes at the end */ - sm_list tmp = (yyvsp[(1) - (2)].list); + sm_list tmp = (yyvsp[-1].list); while (tmp->next != NULL) { tmp = tmp->next; } tmp->next = (yyval.reference)->node.declaration.type_spec; - (yyval.reference)->node.declaration.type_spec = (yyvsp[(1) - (2)].list); + (yyval.reference)->node.declaration.type_spec = (yyvsp[-1].list); } } else if ((yyval.reference)->node_type == cod_array_type_decl) { if ((yyval.reference)->node.array_type_decl.type_spec == NULL) { - (yyval.reference)->node.array_type_decl.type_spec = (yyvsp[(1) - (2)].list); + (yyval.reference)->node.array_type_decl.type_spec = (yyvsp[-1].list); } else { /* * the pointer type list (with the declarator) * goes at the end */ - sm_list tmp = (yyvsp[(1) - (2)].list); + sm_list tmp = (yyvsp[-1].list); while (tmp->next != NULL) { tmp = tmp->next; } tmp->next = (yyval.reference)->node.array_type_decl.type_spec; - (yyval.reference)->node.array_type_decl.type_spec = (yyvsp[(1) - (2)].list); + (yyval.reference)->node.array_type_decl.type_spec = (yyvsp[-1].list); } } else { printf("unexpected node in parameter_declaration"); } - ;} + } +#line 3510 "cod.tab.c" break; - case 158: -#line 1505 "cod/cod.y" - { - sm_list tmp = (yyvsp[(1) - (2)].list); + case 158: /* type_name: specifier_qualifier_list abstract_declarator */ +#line 1519 "cod.y" + { + sm_list tmp = (yyvsp[-1].list); while (tmp->next != NULL) { tmp = tmp->next; } - tmp->next = (yyvsp[(2) - (2)].list); - (yyval.list) = (yyvsp[(1) - (2)].list); - ;} + tmp->next = (yyvsp[0].list); + (yyval.list) = (yyvsp[-1].list); + } +#line 3523 "cod.tab.c" break; - case 160: -#line 1556 "cod/cod.y" - { + case 160: /* initializer: LCURLY initializer_list RCURLY */ +#line 1570 "cod.y" + { (yyval.reference) = cod_new_initializer_list(); - (yyval.reference)->node.initializer_list.initializers = (yyvsp[(2) - (3)].list); - ;} + (yyval.reference)->node.initializer_list.initializers = (yyvsp[-1].list); + } +#line 3532 "cod.tab.c" break; - case 161: -#line 1561 "cod/cod.y" - { + case 161: /* initializer: LCURLY initializer_list COMMA RCURLY */ +#line 1575 "cod.y" + { (yyval.reference) = cod_new_initializer_list(); - (yyval.reference)->node.initializer_list.initializers = (yyvsp[(2) - (4)].list); - ;} + (yyval.reference)->node.initializer_list.initializers = (yyvsp[-2].list); + } +#line 3541 "cod.tab.c" break; - case 162: -#line 1565 "cod/cod.y" - { (yyval.reference) = (yyvsp[(1) - (1)].reference);;} + case 162: /* initializer: assignment_expression */ +#line 1579 "cod.y" + { (yyval.reference) = (yyvsp[0].reference);} +#line 3547 "cod.tab.c" break; - case 163: -#line 1570 "cod/cod.y" - { + case 163: /* initializer_list: designation initializer */ +#line 1584 "cod.y" + { sm_ref initializer = cod_new_initializer(); - initializer->node.initializer.designation = (yyvsp[(1) - (2)].list); - initializer->node.initializer.initializer = (yyvsp[(2) - (2)].reference); + initializer->node.initializer.designation = (yyvsp[-1].list); + initializer->node.initializer.initializer = (yyvsp[0].reference); (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = initializer; (yyval.list)->next = NULL; - ;} + } +#line 3560 "cod.tab.c" break; - case 164: -#line 1578 "cod/cod.y" - { + case 164: /* initializer_list: initializer */ +#line 1592 "cod.y" + { sm_ref initializer = cod_new_initializer(); initializer->node.initializer.designation = NULL; - initializer->node.initializer.initializer = (yyvsp[(1) - (1)].reference); + initializer->node.initializer.initializer = (yyvsp[0].reference); (yyval.list) = malloc(sizeof(struct list_struct)); (yyval.list)->node = initializer; (yyval.list)->next = NULL; - ;} + } +#line 3573 "cod.tab.c" break; - case 165: -#line 1586 "cod/cod.y" - { - sm_list tmp = (yyvsp[(1) - (4)].list); + case 165: /* initializer_list: initializer_list COMMA designation initializer */ +#line 1600 "cod.y" + { + sm_list tmp = (yyvsp[-3].list); sm_ref initializer = cod_new_initializer(); - initializer->node.initializer.designation = (yyvsp[(3) - (4)].list); - initializer->node.initializer.initializer = (yyvsp[(4) - (4)].reference); + initializer->node.initializer.designation = (yyvsp[-1].list); + initializer->node.initializer.initializer = (yyvsp[0].reference); while (tmp->next != NULL) { tmp = tmp->next; } tmp->next = malloc(sizeof(struct list_struct)); tmp->next->node = initializer; tmp->next->next = NULL; - (yyval.list) = (yyvsp[(1) - (4)].list); - ;} + (yyval.list) = (yyvsp[-3].list); + } +#line 3591 "cod.tab.c" break; - case 166: -#line 1599 "cod/cod.y" - { - sm_list tmp = (yyvsp[(1) - (3)].list); + case 166: /* initializer_list: initializer_list COMMA initializer */ +#line 1613 "cod.y" + { + sm_list tmp = (yyvsp[-2].list); sm_ref initializer = cod_new_initializer(); initializer->node.initializer.designation = NULL; - initializer->node.initializer.initializer = (yyvsp[(3) - (3)].reference); + initializer->node.initializer.initializer = (yyvsp[0].reference); while (tmp->next != NULL) { tmp = tmp->next; } tmp->next = malloc(sizeof(struct list_struct)); tmp->next->node = initializer; tmp->next->next = NULL; - (yyval.list) = (yyvsp[(1) - (3)].list); - ;} + (yyval.list) = (yyvsp[-2].list); + } +#line 3609 "cod.tab.c" break; - case 167: -#line 1616 "cod/cod.y" - { (yyval.list) = (yyvsp[(1) - (2)].list);;} + case 167: /* designation: designator_list ASSIGN */ +#line 1630 "cod.y" + { (yyval.list) = (yyvsp[-1].list);} +#line 3615 "cod.tab.c" break; - case 168: -#line 1620 "cod/cod.y" - { + case 168: /* designator_list: designator */ +#line 1634 "cod.y" + { (yyval.list) = malloc(sizeof(struct list_struct)); - (yyval.list)->node = (yyvsp[(1) - (1)].reference); + (yyval.list)->node = (yyvsp[0].reference); (yyval.list)->next = NULL; - ;} + } +#line 3625 "cod.tab.c" break; - case 169: -#line 1625 "cod/cod.y" - { - sm_list tmp = (yyvsp[(1) - (2)].list); + case 169: /* designator_list: designator_list designator */ +#line 1639 "cod.y" + { + sm_list tmp = (yyvsp[-1].list); while (tmp->next != NULL) { tmp = tmp->next; } tmp->next = malloc(sizeof(struct list_struct)); - tmp->next->node = (yyvsp[(2) - (2)].reference); + tmp->next->node = (yyvsp[0].reference); tmp->next->next = NULL; - (yyval.list) = (yyvsp[(1) - (2)].list); - ;} + (yyval.list) = (yyvsp[-1].list); + } +#line 3640 "cod.tab.c" break; - case 170: -#line 1639 "cod/cod.y" - { + case 170: /* designator: LBRACKET constant_expression RBRACKET */ +#line 1653 "cod.y" + { (yyval.reference) = cod_new_designator(); - (yyval.reference)->node.designator.expression = (yyvsp[(2) - (3)].reference); + (yyval.reference)->node.designator.expression = (yyvsp[-1].reference); (yyval.reference)->node.designator.id = NULL; - ;} + } +#line 3650 "cod.tab.c" break; - case 171: -#line 1645 "cod/cod.y" - { + case 171: /* designator: DOT identifier_ref */ +#line 1659 "cod.y" + { (yyval.reference) = cod_new_designator(); (yyval.reference)->node.designator.expression = NULL; - (yyval.reference)->node.designator.id = (yyvsp[(2) - (2)].info).string; - ;} + (yyval.reference)->node.designator.id = (yyvsp[0].info).string; + } +#line 3660 "cod.tab.c" break; - case 172: -#line 1653 "cod/cod.y" - { + case 172: /* decls_stmts_list: statement */ +#line 1667 "cod.y" + { sm_list tmp = malloc(sizeof(struct list_struct)); - tmp->node = (yyvsp[(1) - (1)].reference); + tmp->node = (yyvsp[0].reference); tmp->next = NULL; (yyval.list) = tmp; - ;} + } +#line 3671 "cod.tab.c" break; - case 173: -#line 1659 "cod/cod.y" - { - (yyval.list) = (yyvsp[(1) - (1)].list); - ;} + case 173: /* decls_stmts_list: declaration */ +#line 1673 "cod.y" + { + (yyval.list) = (yyvsp[0].list); + } +#line 3679 "cod.tab.c" break; - case 174: -#line 1662 "cod/cod.y" - { + case 174: /* decls_stmts_list: error SEMI */ +#line 1676 "cod.y" + { (yyval.list) = NULL; - ;} + } +#line 3687 "cod.tab.c" break; - case 175: -#line 1665 "cod/cod.y" - { + case 175: /* decls_stmts_list: decls_stmts_list statement */ +#line 1679 "cod.y" + { sm_list tmp = malloc(sizeof(struct list_struct)); - tmp->node = (yyvsp[(2) - (2)].reference); + tmp->node = (yyvsp[0].reference); tmp->next = NULL; - (yyval.list) = cod_append_list((yyvsp[(1) - (2)].list), tmp); - ;} + (yyval.list) = cod_append_list((yyvsp[-1].list), tmp); + } +#line 3698 "cod.tab.c" break; - case 176: -#line 1671 "cod/cod.y" - { - (yyval.list) = cod_append_list((yyvsp[(1) - (2)].list), (yyvsp[(2) - (2)].list)); - ;} + case 176: /* decls_stmts_list: decls_stmts_list declaration */ +#line 1685 "cod.y" + { + (yyval.list) = cod_append_list((yyvsp[-1].list), (yyvsp[0].list)); + } +#line 3706 "cod.tab.c" break; - case 183: -#line 1688 "cod/cod.y" - { + case 183: /* labeled_statement: identifier_ref COLON statement */ +#line 1702 "cod.y" + { (yyval.reference) = cod_new_label_statement(); - (yyval.reference)->node.label_statement.name = (yyvsp[(1) - (3)].info).string; - (yyval.reference)->node.label_statement.statement = (yyvsp[(3) - (3)].reference); - ;} + (yyval.reference)->node.label_statement.name = (yyvsp[-2].info).string; + (yyval.reference)->node.label_statement.statement = (yyvsp[0].reference); + } +#line 3716 "cod.tab.c" break; - case 184: -#line 1695 "cod/cod.y" - { + case 184: /* compound_statement: LCURLY RCURLY */ +#line 1709 "cod.y" + { (yyval.reference) = cod_new_compound_statement(); - ;} + } +#line 3724 "cod.tab.c" break; - case 185: -#line 1698 "cod/cod.y" - { - int count = (yyvsp[(1) - (3)].info).type_stack_count; + case 185: /* compound_statement: LCURLY decls_stmts_list RCURLY */ +#line 1712 "cod.y" + { + int count = (yyvsp[-2].info).type_stack_count; (yyval.reference) = cod_new_compound_statement(); - (yyval.reference)->node.compound_statement.decls = (yyvsp[(2) - (3)].list); + (yyval.reference)->node.compound_statement.decls = (yyvsp[-1].list); cod_remove_defined_types(yycontext, count); - ;} + } +#line 3735 "cod.tab.c" break; - case 186: -#line 1706 "cod/cod.y" - { (yyval.list) = (yyvsp[(1) - (1)].list); ;} + case 186: /* declaration_list: declaration */ +#line 1720 "cod.y" + { (yyval.list) = (yyvsp[0].list); } +#line 3741 "cod.tab.c" break; - case 187: -#line 1708 "cod/cod.y" - { - if ((yyvsp[(1) - (2)].list) == NULL) { - (yyval.list) = (yyvsp[(2) - (2)].list); + case 187: /* declaration_list: declaration_list declaration */ +#line 1722 "cod.y" + { + if ((yyvsp[-1].list) == NULL) { + (yyval.list) = (yyvsp[0].list); } else { - sm_list tmp = (yyvsp[(1) - (2)].list); + sm_list tmp = (yyvsp[-1].list); while (tmp->next != NULL) { tmp = tmp->next; } - tmp->next = (yyvsp[(2) - (2)].list); - (yyval.list) = (yyvsp[(1) - (2)].list); + tmp->next = (yyvsp[0].list); + (yyval.list) = (yyvsp[-1].list); } - ;} + } +#line 3758 "cod.tab.c" break; - case 188: -#line 1722 "cod/cod.y" - { + case 188: /* jump_statement: RETURN_TOKEN expression SEMI */ +#line 1736 "cod.y" + { (yyval.reference) = cod_new_return_statement(); - (yyval.reference)->node.return_statement.expression = (yyvsp[(2) - (3)].reference); - (yyval.reference)->node.return_statement.lx_srcpos = (yyvsp[(1) - (3)].info).lx_srcpos; - ;} + (yyval.reference)->node.return_statement.expression = (yyvsp[-1].reference); + (yyval.reference)->node.return_statement.lx_srcpos = (yyvsp[-2].info).lx_srcpos; + } +#line 3768 "cod.tab.c" break; - case 189: -#line 1727 "cod/cod.y" - { + case 189: /* jump_statement: RETURN_TOKEN SEMI */ +#line 1741 "cod.y" + { (yyval.reference) = cod_new_return_statement(); (yyval.reference)->node.return_statement.expression = NULL; - (yyval.reference)->node.return_statement.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; - ;} + (yyval.reference)->node.return_statement.lx_srcpos = (yyvsp[-1].info).lx_srcpos; + } +#line 3778 "cod.tab.c" break; - case 190: -#line 1732 "cod/cod.y" - { + case 190: /* jump_statement: CONTINUE SEMI */ +#line 1746 "cod.y" + { (yyval.reference) = cod_new_jump_statement(); (yyval.reference)->node.jump_statement.continue_flag = 1; (yyval.reference)->node.jump_statement.goto_target = NULL; - (yyval.reference)->node.jump_statement.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; - ;} + (yyval.reference)->node.jump_statement.lx_srcpos = (yyvsp[-1].info).lx_srcpos; + } +#line 3789 "cod.tab.c" break; - case 191: -#line 1738 "cod/cod.y" - { + case 191: /* jump_statement: BREAK SEMI */ +#line 1752 "cod.y" + { (yyval.reference) = cod_new_jump_statement(); (yyval.reference)->node.jump_statement.continue_flag = 0; (yyval.reference)->node.jump_statement.goto_target = NULL; - (yyval.reference)->node.jump_statement.lx_srcpos = (yyvsp[(1) - (2)].info).lx_srcpos; - ;} + (yyval.reference)->node.jump_statement.lx_srcpos = (yyvsp[-1].info).lx_srcpos; + } +#line 3800 "cod.tab.c" break; - case 192: -#line 1744 "cod/cod.y" - { + case 192: /* jump_statement: GOTO identifier_ref SEMI */ +#line 1758 "cod.y" + { (yyval.reference) = cod_new_jump_statement(); (yyval.reference)->node.jump_statement.continue_flag = 0; - (yyval.reference)->node.jump_statement.goto_target = (yyvsp[(2) - (3)].info).string; - (yyval.reference)->node.jump_statement.lx_srcpos = (yyvsp[(1) - (3)].info).lx_srcpos; - ;} + (yyval.reference)->node.jump_statement.goto_target = (yyvsp[-1].info).string; + (yyval.reference)->node.jump_statement.lx_srcpos = (yyvsp[-2].info).lx_srcpos; + } +#line 3811 "cod.tab.c" break; - case 193: -#line 1753 "cod/cod.y" - { + case 193: /* expression_statement: SEMI */ +#line 1767 "cod.y" + { (yyval.reference) = NULL; - ;} + } +#line 3819 "cod.tab.c" break; - case 194: -#line 1757 "cod/cod.y" - { + case 194: /* expression_statement: expression SEMI */ +#line 1771 "cod.y" + { (yyval.reference) = cod_new_expression_statement(); - (yyval.reference)->node.expression_statement.expression = (yyvsp[(1) - (2)].reference); - ;} + (yyval.reference)->node.expression_statement.expression = (yyvsp[-1].reference); + } +#line 3828 "cod.tab.c" break; - case 195: -#line 1768 "cod/cod.y" - { + case 195: /* selection_statement: IF LPAREN expression RPAREN statement */ +#line 1782 "cod.y" + { (yyval.reference) = cod_new_selection_statement(); - (yyval.reference)->node.selection_statement.lx_srcpos = (yyvsp[(1) - (5)].info).lx_srcpos; - (yyval.reference)->node.selection_statement.conditional = (yyvsp[(3) - (5)].reference); - (yyval.reference)->node.selection_statement.then_part = (yyvsp[(5) - (5)].reference); + (yyval.reference)->node.selection_statement.lx_srcpos = (yyvsp[-4].info).lx_srcpos; + (yyval.reference)->node.selection_statement.conditional = (yyvsp[-2].reference); + (yyval.reference)->node.selection_statement.then_part = (yyvsp[0].reference); (yyval.reference)->node.selection_statement.else_part = NULL; - ;} + } +#line 3840 "cod.tab.c" break; - case 196: -#line 1777 "cod/cod.y" - { + case 196: /* selection_statement: IF LPAREN expression RPAREN statement ELSE statement */ +#line 1791 "cod.y" + { (yyval.reference) = cod_new_selection_statement(); - (yyval.reference)->node.selection_statement.lx_srcpos = (yyvsp[(1) - (7)].info).lx_srcpos; - (yyval.reference)->node.selection_statement.conditional = (yyvsp[(3) - (7)].reference); - (yyval.reference)->node.selection_statement.then_part = (yyvsp[(5) - (7)].reference); - (yyval.reference)->node.selection_statement.else_part = (yyvsp[(7) - (7)].reference); - ;} + (yyval.reference)->node.selection_statement.lx_srcpos = (yyvsp[-6].info).lx_srcpos; + (yyval.reference)->node.selection_statement.conditional = (yyvsp[-4].reference); + (yyval.reference)->node.selection_statement.then_part = (yyvsp[-2].reference); + (yyval.reference)->node.selection_statement.else_part = (yyvsp[0].reference); + } +#line 3852 "cod.tab.c" break; - case 197: -#line 1794 "cod/cod.y" - { + case 197: /* iteration_statement: FOR LPAREN expression_opt SEMI expression_opt SEMI expression_opt RPAREN statement */ +#line 1808 "cod.y" + { (yyval.reference) = cod_new_iteration_statement(); - (yyval.reference)->node.iteration_statement.lx_srcpos = (yyvsp[(1) - (9)].info).lx_srcpos; - (yyval.reference)->node.iteration_statement.init_expr = (yyvsp[(3) - (9)].reference); - (yyval.reference)->node.iteration_statement.test_expr = (yyvsp[(5) - (9)].reference); - (yyval.reference)->node.iteration_statement.iter_expr = (yyvsp[(7) - (9)].reference); - (yyval.reference)->node.iteration_statement.statement = (yyvsp[(9) - (9)].reference); - ;} + (yyval.reference)->node.iteration_statement.lx_srcpos = (yyvsp[-8].info).lx_srcpos; + (yyval.reference)->node.iteration_statement.init_expr = (yyvsp[-6].reference); + (yyval.reference)->node.iteration_statement.test_expr = (yyvsp[-4].reference); + (yyval.reference)->node.iteration_statement.iter_expr = (yyvsp[-2].reference); + (yyval.reference)->node.iteration_statement.statement = (yyvsp[0].reference); + } +#line 3865 "cod.tab.c" break; - case 198: -#line 1804 "cod/cod.y" - { + case 198: /* iteration_statement: WHILE LPAREN expression RPAREN statement */ +#line 1818 "cod.y" + { (yyval.reference) = cod_new_iteration_statement(); - (yyval.reference)->node.iteration_statement.lx_srcpos = (yyvsp[(1) - (5)].info).lx_srcpos; + (yyval.reference)->node.iteration_statement.lx_srcpos = (yyvsp[-4].info).lx_srcpos; (yyval.reference)->node.iteration_statement.init_expr = NULL; - (yyval.reference)->node.iteration_statement.test_expr = (yyvsp[(3) - (5)].reference); + (yyval.reference)->node.iteration_statement.test_expr = (yyvsp[-2].reference); (yyval.reference)->node.iteration_statement.iter_expr = NULL; - (yyval.reference)->node.iteration_statement.statement = (yyvsp[(5) - (5)].reference); - ;} + (yyval.reference)->node.iteration_statement.statement = (yyvsp[0].reference); + } +#line 3878 "cod.tab.c" break; - case 199: -#line 1814 "cod/cod.y" - { + case 199: /* iteration_statement: DO statement WHILE LPAREN expression RPAREN SEMI */ +#line 1828 "cod.y" + { (yyval.reference) = cod_new_iteration_statement(); - (yyval.reference)->node.iteration_statement.lx_srcpos = (yyvsp[(1) - (7)].info).lx_srcpos; + (yyval.reference)->node.iteration_statement.lx_srcpos = (yyvsp[-6].info).lx_srcpos; (yyval.reference)->node.iteration_statement.init_expr = NULL; (yyval.reference)->node.iteration_statement.test_expr = NULL; - (yyval.reference)->node.iteration_statement.post_test_expr = (yyvsp[(5) - (7)].reference); + (yyval.reference)->node.iteration_statement.post_test_expr = (yyvsp[-2].reference); (yyval.reference)->node.iteration_statement.iter_expr = NULL; - (yyval.reference)->node.iteration_statement.statement = (yyvsp[(2) - (7)].reference); - ;} + (yyval.reference)->node.iteration_statement.statement = (yyvsp[-5].reference); + } +#line 3892 "cod.tab.c" break; - case 200: -#line 1827 "cod/cod.y" - { (yyval.reference) = NULL; ;} + case 200: /* expression_opt: %empty */ +#line 1841 "cod.y" + { (yyval.reference) = NULL; } +#line 3898 "cod.tab.c" break; - case 202: -#line 1832 "cod/cod.y" - { + case 202: /* constant: integer_constant */ +#line 1846 "cod.y" + { (yyval.reference) = cod_new_constant(); (yyval.reference)->node.constant.token = integer_constant; - (yyval.reference)->node.constant.const_val = (yyvsp[(1) - (1)].info).string; - (yyval.reference)->node.constant.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; - ;} + (yyval.reference)->node.constant.const_val = (yyvsp[0].info).string; + (yyval.reference)->node.constant.lx_srcpos = (yyvsp[0].info).lx_srcpos; + } +#line 3909 "cod.tab.c" break; - case 203: -#line 1839 "cod/cod.y" - { + case 203: /* constant: floating_constant */ +#line 1853 "cod.y" + { (yyval.reference) = cod_new_constant(); (yyval.reference)->node.constant.token = floating_constant; - (yyval.reference)->node.constant.const_val = (yyvsp[(1) - (1)].info).string; - (yyval.reference)->node.constant.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; - ;} + (yyval.reference)->node.constant.const_val = (yyvsp[0].info).string; + (yyval.reference)->node.constant.lx_srcpos = (yyvsp[0].info).lx_srcpos; + } +#line 3920 "cod.tab.c" break; - case 204: -#line 1846 "cod/cod.y" - { + case 204: /* constant: string_constant */ +#line 1860 "cod.y" + { (yyval.reference) = cod_new_constant(); (yyval.reference)->node.constant.token = string_constant; - (yyval.reference)->node.constant.const_val = (yyvsp[(1) - (1)].info).string; - (yyval.reference)->node.constant.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; - ;} + (yyval.reference)->node.constant.const_val = (yyvsp[0].info).string; + (yyval.reference)->node.constant.lx_srcpos = (yyvsp[0].info).lx_srcpos; + } +#line 3931 "cod.tab.c" break; - case 205: -#line 1853 "cod/cod.y" - { + case 205: /* constant: character_constant */ +#line 1867 "cod.y" + { (yyval.reference) = cod_new_constant(); (yyval.reference)->node.constant.token = character_constant; - (yyval.reference)->node.constant.const_val = (yyvsp[(1) - (1)].info).string; - (yyval.reference)->node.constant.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; - ;} + (yyval.reference)->node.constant.const_val = (yyvsp[0].info).string; + (yyval.reference)->node.constant.lx_srcpos = (yyvsp[0].info).lx_srcpos; + } +#line 3942 "cod.tab.c" break; - case 206: -#line 1860 "cod/cod.y" - { + case 206: /* constant: enumeration_constant */ +#line 1874 "cod.y" + { (yyval.reference) = cod_new_constant(); (yyval.reference)->node.constant.token = character_constant; - (yyval.reference)->node.constant.const_val = (yyvsp[(1) - (1)].info).string; - (yyval.reference)->node.constant.lx_srcpos = (yyvsp[(1) - (1)].info).lx_srcpos; - ;} + (yyval.reference)->node.constant.const_val = (yyvsp[0].info).string; + (yyval.reference)->node.constant.lx_srcpos = (yyvsp[0].info).lx_srcpos; + } +#line 3953 "cod.tab.c" break; -/* Line 1267 of yacc.c. */ -#line 3997 "/Users/eisen/prog/ffs/build/cod.tab.c" +#line 3957 "cod.tab.c" + default: break; } - YY_SYMBOL_PRINT ("-> $$ =", yyr1[yyn], &yyval, &yyloc); + /* User semantic actions sometimes alter yychar, and that requires + that yytoken be updated with the new translation. We take the + approach of translating immediately before every use of yytoken. + One alternative is translating here after every semantic action, + but that translation would be missed if the semantic action invokes + YYABORT, YYACCEPT, or YYERROR immediately after altering yychar or + if it invokes YYBACKUP. In the case of YYABORT or YYACCEPT, an + incorrect destructor might then be invoked immediately. In the + case of YYERROR or YYBACKUP, subsequent parser actions might lead + to an incorrect destructor call or verbose syntax error message + before the lookahead is translated. */ + YY_SYMBOL_PRINT ("-> $$ =", YY_CAST (yysymbol_kind_t, yyr1[yyn]), &yyval, &yyloc); YYPOPSTACK (yylen); yylen = 0; - YY_STACK_PRINT (yyss, yyssp); *++yyvsp = yyval; - - /* Now `shift' the result of the reduction. Determine what state + /* Now 'shift' the result of the reduction. Determine what state that goes to, based on the state we popped back to and the rule number reduced by. */ - - yyn = yyr1[yyn]; - - yystate = yypgoto[yyn - YYNTOKENS] + *yyssp; - if (0 <= yystate && yystate <= YYLAST && yycheck[yystate] == *yyssp) - yystate = yytable[yystate]; - else - yystate = yydefgoto[yyn - YYNTOKENS]; + { + const int yylhs = yyr1[yyn] - YYNTOKENS; + const int yyi = yypgoto[yylhs] + *yyssp; + yystate = (0 <= yyi && yyi <= YYLAST && yycheck[yyi] == *yyssp + ? yytable[yyi] + : yydefgoto[yylhs]); + } goto yynewstate; -/*------------------------------------. -| yyerrlab -- here on detecting error | -`------------------------------------*/ +/*--------------------------------------. +| yyerrlab -- here on detecting error. | +`--------------------------------------*/ yyerrlab: + /* Make sure we have latest lookahead translation. See comments at + user semantic actions for why this is necessary. */ + yytoken = yychar == YYEMPTY ? YYSYMBOL_YYEMPTY : YYTRANSLATE (yychar); /* If not already recovering from an error, report this error. */ if (!yyerrstatus) { ++yynerrs; -#if ! YYERROR_VERBOSE yyerror (YY_("syntax error")); -#else - { - YYSIZE_T yysize = yysyntax_error (0, yystate, yychar); - if (yymsg_alloc < yysize && yymsg_alloc < YYSTACK_ALLOC_MAXIMUM) - { - YYSIZE_T yyalloc = 2 * yysize; - if (! (yysize <= yyalloc && yyalloc <= YYSTACK_ALLOC_MAXIMUM)) - yyalloc = YYSTACK_ALLOC_MAXIMUM; - if (yymsg != yymsgbuf) - YYSTACK_FREE (yymsg); - yymsg = (char *) YYSTACK_ALLOC (yyalloc); - if (yymsg) - yymsg_alloc = yyalloc; - else - { - yymsg = yymsgbuf; - yymsg_alloc = sizeof yymsgbuf; - } - } - - if (0 < yysize && yysize <= yymsg_alloc) - { - (void) yysyntax_error (yymsg, yystate, yychar); - yyerror (yymsg); - } - else - { - yyerror (YY_("syntax error")); - if (yysize != 0) - goto yyexhaustedlab; - } - } -#endif } - - if (yyerrstatus == 3) { - /* If just tried and failed to reuse look-ahead token after an - error, discard it. */ + /* If just tried and failed to reuse lookahead token after an + error, discard it. */ if (yychar <= YYEOF) - { - /* Return failure if at end of input. */ - if (yychar == YYEOF) - YYABORT; - } + { + /* Return failure if at end of input. */ + if (yychar == YYEOF) + YYABORT; + } else - { - yydestruct ("Error: discarding", - yytoken, &yylval); - yychar = YYEMPTY; - } + { + yydestruct ("Error: discarding", + yytoken, &yylval); + yychar = YYEMPTY; + } } - /* Else will try to reuse look-ahead token after shifting the error + /* Else will try to reuse lookahead token after shifting the error token. */ goto yyerrlab1; @@ -4095,14 +4031,13 @@ yyparse () | yyerrorlab -- error raised explicitly by YYERROR. | `---------------------------------------------------*/ yyerrorlab: + /* Pacify compilers when the user code never invokes YYERROR and the + label yyerrorlab therefore never appears in user code. */ + if (0) + YYERROR; + ++yynerrs; - /* Pacify compilers like GCC when the user code never invokes - YYERROR and the label yyerrorlab therefore never appears in user - code. */ - if (/*CONSTCOND*/ 0) - goto yyerrorlab; - - /* Do not reclaim the symbols of the rule which action triggered + /* Do not reclaim the symbols of the rule whose action triggered this YYERROR. */ YYPOPSTACK (yylen); yylen = 0; @@ -4115,42 +4050,42 @@ yyparse () | yyerrlab1 -- common code for both syntax error and YYERROR. | `-------------------------------------------------------------*/ yyerrlab1: - yyerrstatus = 3; /* Each real token shifted decrements this. */ + yyerrstatus = 3; /* Each real token shifted decrements this. */ + /* Pop stack until we find a state that shifts the error token. */ for (;;) { yyn = yypact[yystate]; - if (yyn != YYPACT_NINF) - { - yyn += YYTERROR; - if (0 <= yyn && yyn <= YYLAST && yycheck[yyn] == YYTERROR) - { - yyn = yytable[yyn]; - if (0 < yyn) - break; - } - } + if (!yypact_value_is_default (yyn)) + { + yyn += YYSYMBOL_YYerror; + if (0 <= yyn && yyn <= YYLAST && yycheck[yyn] == YYSYMBOL_YYerror) + { + yyn = yytable[yyn]; + if (0 < yyn) + break; + } + } /* Pop the current state because it cannot handle the error token. */ if (yyssp == yyss) - YYABORT; + YYABORT; yydestruct ("Error: popping", - yystos[yystate], yyvsp); + YY_ACCESSING_SYMBOL (yystate), yyvsp); YYPOPSTACK (1); yystate = *yyssp; YY_STACK_PRINT (yyss, yyssp); } - if (yyn == YYFINAL) - YYACCEPT; - + YY_IGNORE_MAYBE_UNINITIALIZED_BEGIN *++yyvsp = yylval; + YY_IGNORE_MAYBE_UNINITIALIZED_END /* Shift the error token. */ - YY_SYMBOL_PRINT ("Shifting", yystos[yyn], yyvsp, yylsp); + YY_SYMBOL_PRINT ("Shifting", YY_ACCESSING_SYMBOL (yyn), yyvsp, yylsp); yystate = yyn; goto yynewstate; @@ -4161,54 +4096,61 @@ yyparse () `-------------------------------------*/ yyacceptlab: yyresult = 0; - goto yyreturn; + goto yyreturnlab; + /*-----------------------------------. | yyabortlab -- YYABORT comes here. | `-----------------------------------*/ yyabortlab: yyresult = 1; - goto yyreturn; + goto yyreturnlab; -#ifndef yyoverflow -/*-------------------------------------------------. -| yyexhaustedlab -- memory exhaustion comes here. | -`-------------------------------------------------*/ + +/*-----------------------------------------------------------. +| yyexhaustedlab -- YYNOMEM (memory exhaustion) comes here. | +`-----------------------------------------------------------*/ yyexhaustedlab: yyerror (YY_("memory exhausted")); yyresult = 2; - /* Fall through. */ -#endif + goto yyreturnlab; -yyreturn: - if (yychar != YYEOF && yychar != YYEMPTY) - yydestruct ("Cleanup: discarding lookahead", - yytoken, &yylval); - /* Do not reclaim the symbols of the rule which action triggered + +/*----------------------------------------------------------. +| yyreturnlab -- parsing is finished, clean up and return. | +`----------------------------------------------------------*/ +yyreturnlab: + if (yychar != YYEMPTY) + { + /* Make sure we have latest lookahead translation. See comments at + user semantic actions for why this is necessary. */ + yytoken = YYTRANSLATE (yychar); + yydestruct ("Cleanup: discarding lookahead", + yytoken, &yylval); + } + /* Do not reclaim the symbols of the rule whose action triggered this YYABORT or YYACCEPT. */ YYPOPSTACK (yylen); YY_STACK_PRINT (yyss, yyssp); while (yyssp != yyss) { yydestruct ("Cleanup: popping", - yystos[*yyssp], yyvsp); + YY_ACCESSING_SYMBOL (+*yyssp), yyvsp); YYPOPSTACK (1); } #ifndef yyoverflow if (yyss != yyssa) YYSTACK_FREE (yyss); #endif -#if YYERROR_VERBOSE - if (yymsg != yymsgbuf) - YYSTACK_FREE (yymsg); -#endif - /* Make sure YYID is used. */ - return YYID (yyresult); -} + return yyresult; +} -#line 1868 "cod/cod.y" +#line 1882 "cod.y" +#ifdef _MSC_VER +#define YY_NO_UNISTD_H +#endif #include "lex.yy.c" typedef struct scope *scope_ptr; @@ -4273,7 +4215,7 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) { char *out; char *ptr; - if (index(input, '#') == NULL) return NULL; + if (strchr(input, '#') == NULL) return NULL; out = strdup(input); ptr = out; *white = 0; @@ -4287,10 +4229,10 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) char *include_end; ptr += 8; while(isspace(*ptr)) ptr++; - line_end = index(ptr, '\n'); + line_end = strchr(ptr, '\n'); if (line_end) *line_end = 0; if ((*ptr == '<') || (*ptr == '"')) { - include_end = (*ptr == '<') ? index(ptr, '>') : index((ptr+1), '"'); + include_end = (*ptr == '<') ? strchr(ptr, '>') : strchr((ptr+1), '"'); if (!include_end) { printf("improper #include, \"%s\"\n", ptr); goto skip; @@ -4311,10 +4253,10 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) } skip: /* skip to next line */ - ptr = index(ptr, '\n'); + ptr = strchr(ptr, '\n'); while (ptr && (*(ptr - 1) == '\'')) { /* continued line */ - ptr = index(ptr, '\n'); + ptr = strchr(ptr, '\n'); } } { @@ -4329,9 +4271,7 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) } int -cod_parse_for_globals(code, context) -char *code; -cod_parse_context context; +cod_parse_for_globals(char *code, cod_parse_context context) { int ret; context->alloc_globals = 1; @@ -4340,9 +4280,7 @@ cod_parse_context context; return ret; } int -cod_parse_for_context(code, context) -char *code; -cod_parse_context context; +cod_parse_for_context(char *code, cod_parse_context context) { sm_list decls; int ret; @@ -4407,12 +4345,10 @@ static int include_prefix(char *code) break; } } - return tmp - code; + return (int)(intptr_t)(tmp - code); } cod_code -cod_code_gen(code, context) -char *code; -cod_parse_context context; +cod_code_gen(char *code, cod_parse_context context) { sm_ref tmp, tmp2; cod_code ret_code; @@ -4423,7 +4359,7 @@ cod_parse_context context; if (code != NULL) { if ((bracket = include_prefix(code))) { char *prefix = malloc(bracket+1), *tmp; - strncpy(prefix, code, bracket); + strncpy(prefix, code, bracket + 1); prefix[bracket] = 0; tmp = prefix; while(isspace(*tmp)) tmp++; @@ -4475,7 +4411,7 @@ cod_parse_context context; tmp->node.compound_statement.decls = NULL; tmp2->node.compound_statement.decls = NULL; cod_rfree(tmp2); - ret_code->func = (void(*)())(long)func; + ret_code->func = (void(*)(void))(intptr_t)func; return ret_code; } @@ -4493,9 +4429,7 @@ cod_dump(cod_code code) int -cod_code_verify(code, context) -char *code; -cod_parse_context context; +cod_code_verify(char *code, cod_parse_context context) { sm_ref tmp; @@ -4533,8 +4467,7 @@ cod_parse_context context; } extern void -cod_code_free(code) -cod_code code; +cod_code_free(cod_code code) { if (code->code_memory_block) free(code->code_memory_block); if (code->data) free(code->data); @@ -4594,7 +4527,7 @@ print_context(cod_parse_context context, int line, int character) offset = character - 40; } line_copy = copy_line(line_begin + offset); - line_len = strlen(line_copy); + line_len = (int)strlen(line_copy); if (line_len > 60) { line_copy[60] = 0; } @@ -4611,8 +4544,7 @@ print_context(cod_parse_context context, int line, int character) context->error_func(context->client_data, "^\n"); } -void yyerror(str) -char *str; +void yyerror(char *str) { char tmp_str[100]; sprintf(tmp_str, "## Error %s\n", str); @@ -4806,8 +4738,7 @@ struct scope { extern cod_parse_context -cod_copy_context(context) -cod_parse_context context; +cod_copy_context(cod_parse_context context) { int i, count; int type_count = 0; @@ -4844,8 +4775,7 @@ cod_parse_context context; extern void dump_scope(scope_ptr scope); extern cod_parse_context -cod_copy_globals(context) -cod_parse_context context; +cod_copy_globals(cod_parse_context context) { int i, count; int type_count = 0; @@ -5184,7 +5114,7 @@ determine_op_type(cod_parse_context context, sm_ref expr, if ((left_type == DILL_UL) || (right_type == DILL_UL)) return DILL_UL; if ((left_type == DILL_L) || (right_type == DILL_L)) { /* GSE -bug This test should be for *generated* target, not host */ - if (sizeof(long) > sizeof(unsigned int)) { + if (sizeof(intptr_t) > sizeof(unsigned int)) { /* Long can represent all values of unsigned int */ return DILL_L; } else { @@ -5535,7 +5465,7 @@ type_list_to_string(cod_parse_context context, sm_list type_list, int *size) *size = sizeof(int); return strdup("integer"); case DILL_L: - *size = sizeof(long); + *size = sizeof(intptr_t); return strdup("integer"); case DILL_S: *size = sizeof(short); @@ -5544,7 +5474,7 @@ type_list_to_string(cod_parse_context context, sm_list type_list, int *size) *size = sizeof(int); return strdup("unsigned integer"); case DILL_UL: - *size = sizeof(long); + *size = sizeof(intptr_t); return strdup("unsigned integer"); case DILL_US: *size = sizeof(short); @@ -6448,7 +6378,7 @@ unsigned long, long long, unsigned long long */ long i; - int len = strlen(val); + int len = (int)strlen(val); int hex = 0; int specified_unsgned = 0, specified_lng = 0; if (val[0] == '0') { @@ -7947,9 +7877,7 @@ cod_remove_defined_types(cod_parse_context context, int count) } void -cod_add_defined_type(id, context) -char *id; -cod_parse_context context; +cod_add_defined_type(char *id, cod_parse_context context) { int count = 0; while(context->defined_types && context->defined_types[count]) count++; @@ -7966,9 +7894,7 @@ cod_parse_context context; } void -cod_add_enum_const(id, context) -char *id; -cod_parse_context context; +cod_add_enum_const(char *id, cod_parse_context context) { int count = 0; while(context->enumerated_constants && context->enumerated_constants[count]) count++; @@ -8009,9 +7935,7 @@ cod_add_struct_type(FMStructDescList format_list, } static int -str_to_data_type(str, size) -char *str; -int size; +str_to_data_type(char *str, int size) { char *tmp = malloc(strlen(str) + 1); char *free_str = tmp; @@ -8033,7 +7957,7 @@ int size; } if ((strcmp(str, "integer") == 0) || (strcmp(str, "enumeration") == 0)) { free(free_str); - if (size == sizeof(long)) { + if (size == sizeof(intptr_t)) { return DILL_L; } else if (size == sizeof(int)) { return DILL_I; @@ -8046,7 +7970,7 @@ int size; } } else if (strcmp(str, "unsigned integer") == 0) { free(free_str); - if (size == sizeof(long)) { + if (size == sizeof(intptr_t)) { return DILL_UL; } else if (size == sizeof(int)) { return DILL_U; @@ -8081,9 +8005,7 @@ int size; } static int -array_str_to_data_type(str, size) -char *str; -int size; +array_str_to_data_type(char *str, int size) { int ret_type; char field_type[1024]; @@ -8103,14 +8025,8 @@ int size; } static sm_ref -build_subtype_nodes(context, decl, f, desc, err, scope, must_free_p) -cod_parse_context context; -sm_ref decl; -field* f; -FMTypeDesc *desc; -int *err; -scope_ptr scope; -int *must_free_p; +build_subtype_nodes(cod_parse_context context, sm_ref decl, field* f, FMTypeDesc *desc, + int *err, scope_ptr scope, int *must_free_p) { sm_ref ret = NULL; sm_ref subtype = NULL; @@ -8206,8 +8122,8 @@ int *must_free_p; ret->node.reference_type_decl.cg_referenced_type = DILL_ERR; ret->node.reference_type_decl.sm_complex_referenced_type = subtype; if (must_free_flag) { - if (ret->node.array_type_decl.freeable_complex_element_type) { - cod_rfree(ret->node.array_type_decl.freeable_complex_element_type); + if (ret->node.reference_type_decl.freeable_complex_referenced_type) { + cod_rfree(ret->node.reference_type_decl.freeable_complex_referenced_type); } ret->node.reference_type_decl.freeable_complex_referenced_type = subtype; } @@ -8233,16 +8149,8 @@ int *must_free_p; } static void -build_type_nodes(context, decl, f, fields, cg_size, cg_type, desc, err, scope) -cod_parse_context context; -sm_ref decl; -field* f; -sm_list fields; -int cg_size; -int cg_type; -FMTypeDesc* desc; -int *err; -scope_ptr scope; +build_type_nodes(cod_parse_context context, sm_ref decl, field* f, sm_list fields, + int cg_size, int cg_type, FMTypeDesc* desc, int *err, scope_ptr scope) { int must_free_flag = 0; sm_ref complex_type = build_subtype_nodes(context, decl, f, desc, err, scope, &must_free_flag); @@ -8256,13 +8164,7 @@ scope_ptr scope; } static int -semanticize_array_element_node(context, array, super_type, base_type_spec, - scope) -cod_parse_context context; -sm_ref array; -sm_ref super_type; -sm_list base_type_spec; -scope_ptr scope; +semanticize_array_element_node(cod_parse_context context, sm_ref array, sm_ref super_type, sm_list base_type_spec, scope_ptr scope) { if (array->node.array_type_decl.size_expr != NULL) { if (!is_constant_expr(array->node.array_type_decl.size_expr)) { @@ -8330,10 +8232,7 @@ scope_ptr scope; } static int -semanticize_array_type_node(context, array, scope) -cod_parse_context context; -sm_ref array; -scope_ptr scope; +semanticize_array_type_node(cod_parse_context context, sm_ref array, scope_ptr scope) { if (!array->node.array_type_decl.dimensions) { array->node.array_type_decl.dimensions = malloc(sizeof(dimen_s)); @@ -8837,7 +8736,7 @@ static void uniqueify_names(FMStructDescList list, char *prefix) { int i = 0; - int prefix_len = strlen(prefix); + int prefix_len = (int)strlen(prefix); while (list[i].format_name != NULL) { int j = 0; FMFieldList fl = list[i].field_list; @@ -8845,14 +8744,14 @@ uniqueify_names(FMStructDescList list, char *prefix) malloc(strlen(list[i].format_name) + prefix_len + 1); strcpy(new_name, prefix); strcpy(new_name + prefix_len, list[i].format_name); - free(list[i].format_name); + free((char*)list[i].format_name); list[i].format_name = new_name; while (fl[j].field_name != 0) { - int field_type_len = strlen(fl[j].field_type); + int field_type_len = (int)strlen(fl[j].field_type); char *bracket = strchr(fl[j].field_type, '['); int k; if (bracket != NULL) { - field_type_len = (long) bracket - (long) fl[j].field_type; + field_type_len = (int)((intptr_t) bracket - (intptr_t) fl[j].field_type); } for (k = 0; k < i; k++) { char *new_type; @@ -8940,9 +8839,10 @@ get_constant_float_value(cod_parse_context context, sm_ref expr) default: assert(FALSE); } + return 0.0; } -static long +static intptr_t get_constant_long_value(cod_parse_context context, sm_ref expr) { double dresult; @@ -8961,6 +8861,7 @@ get_constant_long_value(cod_parse_context context, sm_ref expr) default: assert(FALSE); } + return -1; } extern sm_ref @@ -9054,7 +8955,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ is_ivalue=1; break; case op_eq: - ivalue = left_val = right_val; + ivalue = left_val == right_val; is_ivalue=1; break; case op_neq: @@ -9099,7 +9000,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ *free_result = 1; } else { /* we get an integer result */ - long left_val = 0, right_val = 0, value; + intptr_t left_val = 0, right_val = 0, value; char str_val[40]; if (expr->node.operator.left) left_val = get_constant_long_value(context, left); @@ -9178,7 +9079,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ } ret = cod_new_constant(); ret->node.constant.token = integer_constant; - sprintf(str_val, "%ld", value); + sprintf(str_val, "%Id", value); ret->node.constant.const_val = strdup(str_val); *free_result = 1; } @@ -9200,6 +9101,6 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ default: assert(FALSE); } + return NULL; } - diff --git a/cod/pregen_source/Windows/cod.y b/cod/pregen_source/Windows/cod.y index 6fcf832a75..d71e908d4d 100644 --- a/cod/pregen_source/Windows/cod.y +++ b/cod/pregen_source/Windows/cod.y @@ -1,5 +1,8 @@ %{ #include "config.h" +#ifdef __NVCOMPILER +#pragma diag_suppress 550, 111, 941 +#endif #if defined (__INTEL_COMPILER) # pragma warning (disable: 2215) #endif @@ -31,10 +34,6 @@ int cod_kplugins_integration = 0; #include #endif #endif -#include "fm.h" -#include "fm_internal.h" -#include "cod.h" -#include "cod_internal.h" #undef NDEBUG #include "assert.h" #ifndef LINUX_KERNEL_MODULE @@ -58,6 +57,10 @@ int cod_kplugins_integration = 0; #define OP_DBL_Digs (DBL_DIG + 3) #endif #endif +#include "fm.h" +#include "fm_internal.h" +#include "cod.h" +#include "cod_internal.h" #include "structs.h" #ifdef HAVE_DILL_H #include "dill.h" @@ -79,9 +82,17 @@ enum { DILL_EC, DILL_ERR /* no type */ }; +typedef void *dill_stream; +#define dill_create_stream() 0 +#define dill_type_size(c, s) 0 #endif #if defined(_MSC_VER) #define strdup _strdup +#define isatty _isatty +#define fileno _fileno +#include +#include +#include #endif #ifndef LINUX_KERNEL_MODULE #ifdef STDC_HEADERS @@ -106,14 +117,17 @@ char *strdup(const char *s) return p; } #endif +#ifdef _MSC_VER +#undef strncpy +#endif #define YY_NO_INPUT static char* gen_anon() { static int anon_count = 0; - char *ret = malloc(strlen("Anonymous-xxxxxxxxxxxxxxxxx")); - sprintf(ret, "Anonymous-%d", anon_count++); + char *ret = malloc(40); + snprintf(ret, 40, "Anonymous-%d", anon_count++); return ret; } @@ -1866,6 +1880,9 @@ constant : ; %% +#ifdef _MSC_VER +#define YY_NO_UNISTD_H +#endif #include "lex.yy.c" typedef struct scope *scope_ptr; @@ -1930,7 +1947,7 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) { char *out; char *ptr; - if (index(input, '#') == NULL) return NULL; + if (strchr(input, '#') == NULL) return NULL; out = strdup(input); ptr = out; *white = 0; @@ -1944,10 +1961,10 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) char *include_end; ptr += 8; while(isspace(*ptr)) ptr++; - line_end = index(ptr, '\n'); + line_end = strchr(ptr, '\n'); if (line_end) *line_end = 0; if ((*ptr == '<') || (*ptr == '"')) { - include_end = (*ptr == '<') ? index(ptr, '>') : index((ptr+1), '"'); + include_end = (*ptr == '<') ? strchr(ptr, '>') : strchr((ptr+1), '"'); if (!include_end) { printf("improper #include, \"%s\"\n", ptr); goto skip; @@ -1968,10 +1985,10 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) } skip: /* skip to next line */ - ptr = index(ptr, '\n'); + ptr = strchr(ptr, '\n'); while (ptr && (*(ptr - 1) == '\'')) { /* continued line */ - ptr = index(ptr, '\n'); + ptr = strchr(ptr, '\n'); } } { @@ -1986,9 +2003,7 @@ cod_preprocessor(char *input, cod_parse_context context, int*white) } int -cod_parse_for_globals(code, context) -char *code; -cod_parse_context context; +cod_parse_for_globals(char *code, cod_parse_context context) { int ret; context->alloc_globals = 1; @@ -1997,9 +2012,7 @@ cod_parse_context context; return ret; } int -cod_parse_for_context(code, context) -char *code; -cod_parse_context context; +cod_parse_for_context(char *code, cod_parse_context context) { sm_list decls; int ret; @@ -2064,12 +2077,10 @@ static int include_prefix(char *code) break; } } - return tmp - code; + return (int)(intptr_t)(tmp - code); } cod_code -cod_code_gen(code, context) -char *code; -cod_parse_context context; +cod_code_gen(char *code, cod_parse_context context) { sm_ref tmp, tmp2; cod_code ret_code; @@ -2080,7 +2091,7 @@ cod_parse_context context; if (code != NULL) { if ((bracket = include_prefix(code))) { char *prefix = malloc(bracket+1), *tmp; - strncpy(prefix, code, bracket); + strncpy(prefix, code, bracket + 1); prefix[bracket] = 0; tmp = prefix; while(isspace(*tmp)) tmp++; @@ -2132,7 +2143,7 @@ cod_parse_context context; tmp->node.compound_statement.decls = NULL; tmp2->node.compound_statement.decls = NULL; cod_rfree(tmp2); - ret_code->func = (void(*)())(long)func; + ret_code->func = (void(*)(void))(intptr_t)func; return ret_code; } @@ -2150,9 +2161,7 @@ cod_dump(cod_code code) int -cod_code_verify(code, context) -char *code; -cod_parse_context context; +cod_code_verify(char *code, cod_parse_context context) { sm_ref tmp; @@ -2190,8 +2199,7 @@ cod_parse_context context; } extern void -cod_code_free(code) -cod_code code; +cod_code_free(cod_code code) { if (code->code_memory_block) free(code->code_memory_block); if (code->data) free(code->data); @@ -2251,7 +2259,7 @@ print_context(cod_parse_context context, int line, int character) offset = character - 40; } line_copy = copy_line(line_begin + offset); - line_len = strlen(line_copy); + line_len = (int)strlen(line_copy); if (line_len > 60) { line_copy[60] = 0; } @@ -2268,8 +2276,7 @@ print_context(cod_parse_context context, int line, int character) context->error_func(context->client_data, "^\n"); } -void yyerror(str) -char *str; +void yyerror(char *str) { char tmp_str[100]; sprintf(tmp_str, "## Error %s\n", str); @@ -2463,8 +2470,7 @@ struct scope { extern cod_parse_context -cod_copy_context(context) -cod_parse_context context; +cod_copy_context(cod_parse_context context) { int i, count; int type_count = 0; @@ -2501,8 +2507,7 @@ cod_parse_context context; extern void dump_scope(scope_ptr scope); extern cod_parse_context -cod_copy_globals(context) -cod_parse_context context; +cod_copy_globals(cod_parse_context context) { int i, count; int type_count = 0; @@ -2841,7 +2846,7 @@ determine_op_type(cod_parse_context context, sm_ref expr, if ((left_type == DILL_UL) || (right_type == DILL_UL)) return DILL_UL; if ((left_type == DILL_L) || (right_type == DILL_L)) { /* GSE -bug This test should be for *generated* target, not host */ - if (sizeof(long) > sizeof(unsigned int)) { + if (sizeof(intptr_t) > sizeof(unsigned int)) { /* Long can represent all values of unsigned int */ return DILL_L; } else { @@ -3192,7 +3197,7 @@ type_list_to_string(cod_parse_context context, sm_list type_list, int *size) *size = sizeof(int); return strdup("integer"); case DILL_L: - *size = sizeof(long); + *size = sizeof(intptr_t); return strdup("integer"); case DILL_S: *size = sizeof(short); @@ -3201,7 +3206,7 @@ type_list_to_string(cod_parse_context context, sm_list type_list, int *size) *size = sizeof(int); return strdup("unsigned integer"); case DILL_UL: - *size = sizeof(long); + *size = sizeof(intptr_t); return strdup("unsigned integer"); case DILL_US: *size = sizeof(short); @@ -4105,7 +4110,7 @@ unsigned long, long long, unsigned long long */ long i; - int len = strlen(val); + int len = (int)strlen(val); int hex = 0; int specified_unsgned = 0, specified_lng = 0; if (val[0] == '0') { @@ -5604,9 +5609,7 @@ cod_remove_defined_types(cod_parse_context context, int count) } void -cod_add_defined_type(id, context) -char *id; -cod_parse_context context; +cod_add_defined_type(char *id, cod_parse_context context) { int count = 0; while(context->defined_types && context->defined_types[count]) count++; @@ -5623,9 +5626,7 @@ cod_parse_context context; } void -cod_add_enum_const(id, context) -char *id; -cod_parse_context context; +cod_add_enum_const(char *id, cod_parse_context context) { int count = 0; while(context->enumerated_constants && context->enumerated_constants[count]) count++; @@ -5666,9 +5667,7 @@ cod_add_struct_type(FMStructDescList format_list, } static int -str_to_data_type(str, size) -char *str; -int size; +str_to_data_type(char *str, int size) { char *tmp = malloc(strlen(str) + 1); char *free_str = tmp; @@ -5690,7 +5689,7 @@ int size; } if ((strcmp(str, "integer") == 0) || (strcmp(str, "enumeration") == 0)) { free(free_str); - if (size == sizeof(long)) { + if (size == sizeof(intptr_t)) { return DILL_L; } else if (size == sizeof(int)) { return DILL_I; @@ -5703,7 +5702,7 @@ int size; } } else if (strcmp(str, "unsigned integer") == 0) { free(free_str); - if (size == sizeof(long)) { + if (size == sizeof(intptr_t)) { return DILL_UL; } else if (size == sizeof(int)) { return DILL_U; @@ -5738,9 +5737,7 @@ int size; } static int -array_str_to_data_type(str, size) -char *str; -int size; +array_str_to_data_type(char *str, int size) { int ret_type; char field_type[1024]; @@ -5760,14 +5757,8 @@ int size; } static sm_ref -build_subtype_nodes(context, decl, f, desc, err, scope, must_free_p) -cod_parse_context context; -sm_ref decl; -field* f; -FMTypeDesc *desc; -int *err; -scope_ptr scope; -int *must_free_p; +build_subtype_nodes(cod_parse_context context, sm_ref decl, field* f, FMTypeDesc *desc, + int *err, scope_ptr scope, int *must_free_p) { sm_ref ret = NULL; sm_ref subtype = NULL; @@ -5863,8 +5854,8 @@ int *must_free_p; ret->node.reference_type_decl.cg_referenced_type = DILL_ERR; ret->node.reference_type_decl.sm_complex_referenced_type = subtype; if (must_free_flag) { - if (ret->node.array_type_decl.freeable_complex_element_type) { - cod_rfree(ret->node.array_type_decl.freeable_complex_element_type); + if (ret->node.reference_type_decl.freeable_complex_referenced_type) { + cod_rfree(ret->node.reference_type_decl.freeable_complex_referenced_type); } ret->node.reference_type_decl.freeable_complex_referenced_type = subtype; } @@ -5890,16 +5881,8 @@ int *must_free_p; } static void -build_type_nodes(context, decl, f, fields, cg_size, cg_type, desc, err, scope) -cod_parse_context context; -sm_ref decl; -field* f; -sm_list fields; -int cg_size; -int cg_type; -FMTypeDesc* desc; -int *err; -scope_ptr scope; +build_type_nodes(cod_parse_context context, sm_ref decl, field* f, sm_list fields, + int cg_size, int cg_type, FMTypeDesc* desc, int *err, scope_ptr scope) { int must_free_flag = 0; sm_ref complex_type = build_subtype_nodes(context, decl, f, desc, err, scope, &must_free_flag); @@ -5913,13 +5896,7 @@ scope_ptr scope; } static int -semanticize_array_element_node(context, array, super_type, base_type_spec, - scope) -cod_parse_context context; -sm_ref array; -sm_ref super_type; -sm_list base_type_spec; -scope_ptr scope; +semanticize_array_element_node(cod_parse_context context, sm_ref array, sm_ref super_type, sm_list base_type_spec, scope_ptr scope) { if (array->node.array_type_decl.size_expr != NULL) { if (!is_constant_expr(array->node.array_type_decl.size_expr)) { @@ -5987,10 +5964,7 @@ scope_ptr scope; } static int -semanticize_array_type_node(context, array, scope) -cod_parse_context context; -sm_ref array; -scope_ptr scope; +semanticize_array_type_node(cod_parse_context context, sm_ref array, scope_ptr scope) { if (!array->node.array_type_decl.dimensions) { array->node.array_type_decl.dimensions = malloc(sizeof(dimen_s)); @@ -6494,7 +6468,7 @@ static void uniqueify_names(FMStructDescList list, char *prefix) { int i = 0; - int prefix_len = strlen(prefix); + int prefix_len = (int)strlen(prefix); while (list[i].format_name != NULL) { int j = 0; FMFieldList fl = list[i].field_list; @@ -6502,14 +6476,14 @@ uniqueify_names(FMStructDescList list, char *prefix) malloc(strlen(list[i].format_name) + prefix_len + 1); strcpy(new_name, prefix); strcpy(new_name + prefix_len, list[i].format_name); - free(list[i].format_name); + free((char*)list[i].format_name); list[i].format_name = new_name; while (fl[j].field_name != 0) { - int field_type_len = strlen(fl[j].field_type); + int field_type_len = (int)strlen(fl[j].field_type); char *bracket = strchr(fl[j].field_type, '['); int k; if (bracket != NULL) { - field_type_len = (long) bracket - (long) fl[j].field_type; + field_type_len = (int)((intptr_t) bracket - (intptr_t) fl[j].field_type); } for (k = 0; k < i; k++) { char *new_type; @@ -6597,9 +6571,10 @@ get_constant_float_value(cod_parse_context context, sm_ref expr) default: assert(FALSE); } + return 0.0; } -static long +static intptr_t get_constant_long_value(cod_parse_context context, sm_ref expr) { double dresult; @@ -6618,6 +6593,7 @@ get_constant_long_value(cod_parse_context context, sm_ref expr) default: assert(FALSE); } + return -1; } extern sm_ref @@ -6711,7 +6687,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ is_ivalue=1; break; case op_eq: - ivalue = left_val = right_val; + ivalue = left_val == right_val; is_ivalue=1; break; case op_neq: @@ -6756,7 +6732,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ *free_result = 1; } else { /* we get an integer result */ - long left_val = 0, right_val = 0, value; + intptr_t left_val = 0, right_val = 0, value; char str_val[40]; if (expr->node.operator.left) left_val = get_constant_long_value(context, left); @@ -6835,7 +6811,7 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ } ret = cod_new_constant(); ret->node.constant.token = integer_constant; - sprintf(str_val, "%ld", value); + sprintf(str_val, "%Id", value); ret->node.constant.const_val = strdup(str_val); *free_result = 1; } @@ -6857,5 +6833,6 @@ evaluate_constant_return_expr(cod_parse_context context, sm_ref expr, int *free_ default: assert(FALSE); } + return NULL; } diff --git a/cod/pregen_source/Windows/lex.yy.c b/cod/pregen_source/Windows/lex.yy.c index e754ca5f93..b2a48531fa 100644 --- a/cod/pregen_source/Windows/lex.yy.c +++ b/cod/pregen_source/Windows/lex.yy.c @@ -1,6 +1,5 @@ -#line 2 "/Users/eisen/prog/ffs/build/lex.yy.c" -#line 4 "/Users/eisen/prog/ffs/build/lex.yy.c" +#line 2 "lex.yy.c" #define YY_INT_ALIGNED short int @@ -8,8 +7,8 @@ #define FLEX_SCANNER #define YY_FLEX_MAJOR_VERSION 2 -#define YY_FLEX_MINOR_VERSION 5 -#define YY_FLEX_SUBMINOR_VERSION 35 +#define YY_FLEX_MINOR_VERSION 6 +#define YY_FLEX_SUBMINOR_VERSION 4 #if YY_FLEX_SUBMINOR_VERSION > 0 #define FLEX_BETA #endif @@ -47,7 +46,6 @@ typedef int16_t flex_int16_t; typedef uint16_t flex_uint16_t; typedef int32_t flex_int32_t; typedef uint32_t flex_uint32_t; -typedef uint64_t flex_uint64_t; #else typedef signed char flex_int8_t; typedef short int flex_int16_t; @@ -55,7 +53,6 @@ typedef int flex_int32_t; typedef unsigned char flex_uint8_t; typedef unsigned short int flex_uint16_t; typedef unsigned int flex_uint32_t; -#endif /* ! C99 */ /* Limits of integral types. */ #ifndef INT8_MIN @@ -86,63 +83,61 @@ typedef unsigned int flex_uint32_t; #define UINT32_MAX (4294967295U) #endif -#endif /* ! FLEXINT_H */ - -#ifdef __cplusplus - -/* The "const" storage-class-modifier is valid. */ -#define YY_USE_CONST - -#else /* ! __cplusplus */ +#ifndef SIZE_MAX +#define SIZE_MAX (~(size_t)0) +#endif -/* C99 requires __STDC__ to be defined as 1. */ -#if defined (__STDC__) +#endif /* ! C99 */ -#define YY_USE_CONST +#endif /* ! FLEXINT_H */ -#endif /* defined (__STDC__) */ -#endif /* ! __cplusplus */ +/* begin standard C++ headers. */ -#ifdef YY_USE_CONST +/* TODO: this is always defined, so inline it */ #define yyconst const + +#if defined(__GNUC__) && __GNUC__ >= 3 +#define yynoreturn __attribute__((__noreturn__)) #else -#define yyconst +#define yynoreturn #endif /* Returned upon end-of-file. */ #define YY_NULL 0 -/* Promotes a possibly negative, possibly signed char to an unsigned - * integer for use as an array index. If the signed char is negative, - * we want to instead treat it as an 8-bit unsigned char, hence the - * double cast. +/* Promotes a possibly negative, possibly signed char to an + * integer in range [0..255] for use as an array index. */ -#define YY_SC_TO_UI(c) ((unsigned int) (unsigned char) c) +#define YY_SC_TO_UI(c) ((YY_CHAR) (c)) /* Enter a start condition. This macro really ought to take a parameter, * but we do it the disgusting crufty way forced on us by the ()-less * definition of BEGIN. */ #define BEGIN (yy_start) = 1 + 2 * - /* Translate the current start state into a value that can be later handed * to BEGIN to return to the state. The YYSTATE alias is for lex * compatibility. */ #define YY_START (((yy_start) - 1) / 2) #define YYSTATE YY_START - /* Action number for EOF rule of a given start state. */ #define YY_STATE_EOF(state) (YY_END_OF_BUFFER + state + 1) - /* Special action meaning "start processing a new file". */ -#define YY_NEW_FILE yyrestart(yyin ) - +#define YY_NEW_FILE yyrestart( yyin ) #define YY_END_OF_BUFFER_CHAR 0 /* Size of default input buffer. */ #ifndef YY_BUF_SIZE +#ifdef __ia64__ +/* On IA-64, the buffer size is 16k, not 8k. + * Moreover, YY_BUF_SIZE is 2*YY_READ_BUF_SIZE in the general case. + * Ditto for the __ia64__ case accordingly. + */ +#define YY_BUF_SIZE 32768 +#else #define YY_BUF_SIZE 16384 +#endif /* __ia64__ */ #endif /* The state buf must be large enough to hold one state per character in the main buffer. @@ -159,15 +154,16 @@ typedef struct yy_buffer_state *YY_BUFFER_STATE; typedef size_t yy_size_t; #endif -extern yy_size_t yyleng; +extern int yyleng; extern FILE *yyin, *yyout; #define EOB_ACT_CONTINUE_SCAN 0 #define EOB_ACT_END_OF_FILE 1 #define EOB_ACT_LAST_MATCH 2 - + #define YY_LESS_LINENO(n) + #define YY_LINENO_REWIND_TO(ptr) /* Return all but the first "n" matched characters back to the input stream. */ #define yyless(n) \ @@ -182,7 +178,6 @@ extern FILE *yyin, *yyout; YY_DO_BEFORE_ACTION; /* set up yytext again */ \ } \ while ( 0 ) - #define unput(c) yyunput( c, (yytext_ptr) ) #ifndef YY_STRUCT_YY_BUFFER_STATE @@ -197,12 +192,12 @@ struct yy_buffer_state /* Size of input buffer in bytes, not including room for EOB * characters. */ - yy_size_t yy_buf_size; + int yy_buf_size; /* Number of characters read into yy_ch_buf, not including EOB * characters. */ - yy_size_t yy_n_chars; + int yy_n_chars; /* Whether we "own" the buffer - i.e., we know we created it, * and can realloc() it to grow it, and should free() it to @@ -225,7 +220,7 @@ struct yy_buffer_state int yy_bs_lineno; /**< The line count. */ int yy_bs_column; /**< The column count. */ - + /* Whether to try to fill the input buffer when we reach the * end of it. */ @@ -253,7 +248,7 @@ struct yy_buffer_state /* Stack of input buffers. */ static size_t yy_buffer_stack_top = 0; /**< index of top of stack. */ static size_t yy_buffer_stack_max = 0; /**< capacity of stack. */ -static YY_BUFFER_STATE * yy_buffer_stack = 0; /**< Stack as an array. */ +static YY_BUFFER_STATE * yy_buffer_stack = NULL; /**< Stack as an array. */ /* We provide macros for accessing buffer states in case in the * future we want to put the buffer states in a more general @@ -264,7 +259,6 @@ static YY_BUFFER_STATE * yy_buffer_stack = 0; /**< Stack as an array. */ #define YY_CURRENT_BUFFER ( (yy_buffer_stack) \ ? (yy_buffer_stack)[(yy_buffer_stack_top)] \ : NULL) - /* Same as previous macro, but useful when we know that the buffer stack is not * NULL or when we need an lvalue. For internal use only. */ @@ -272,11 +266,11 @@ static YY_BUFFER_STATE * yy_buffer_stack = 0; /**< Stack as an array. */ /* yy_hold_char holds the character lost when yytext is formed. */ static char yy_hold_char; -static yy_size_t yy_n_chars; /* number of characters read into yy_ch_buf */ -yy_size_t yyleng; +static int yy_n_chars; /* number of characters read into yy_ch_buf */ +int yyleng; /* Points to current character in buffer. */ -static char *yy_c_buf_p = (char *) 0; +static char *yy_c_buf_p = NULL; static int yy_init = 0; /* whether we need to initialize */ static int yy_start = 0; /* start state number */ @@ -285,82 +279,78 @@ static int yy_start = 0; /* start state number */ */ static int yy_did_buffer_switch_on_eof; -void yyrestart (FILE *input_file ); -void yy_switch_to_buffer (YY_BUFFER_STATE new_buffer ); -YY_BUFFER_STATE yy_create_buffer (FILE *file,int size ); -void yy_delete_buffer (YY_BUFFER_STATE b ); -void yy_flush_buffer (YY_BUFFER_STATE b ); -void yypush_buffer_state (YY_BUFFER_STATE new_buffer ); -void yypop_buffer_state (void ); +void yyrestart ( FILE *input_file ); +void yy_switch_to_buffer ( YY_BUFFER_STATE new_buffer ); +YY_BUFFER_STATE yy_create_buffer ( FILE *file, int size ); +void yy_delete_buffer ( YY_BUFFER_STATE b ); +void yy_flush_buffer ( YY_BUFFER_STATE b ); +void yypush_buffer_state ( YY_BUFFER_STATE new_buffer ); +void yypop_buffer_state ( void ); -static void yyensure_buffer_stack (void ); -static void yy_load_buffer_state (void ); -static void yy_init_buffer (YY_BUFFER_STATE b,FILE *file ); +static void yyensure_buffer_stack ( void ); +static void yy_load_buffer_state ( void ); +static void yy_init_buffer ( YY_BUFFER_STATE b, FILE *file ); +#define YY_FLUSH_BUFFER yy_flush_buffer( YY_CURRENT_BUFFER ) -#define YY_FLUSH_BUFFER yy_flush_buffer(YY_CURRENT_BUFFER ) +YY_BUFFER_STATE yy_scan_buffer ( char *base, yy_size_t size ); +YY_BUFFER_STATE yy_scan_string ( const char *yy_str ); +YY_BUFFER_STATE yy_scan_bytes ( const char *bytes, int len ); -YY_BUFFER_STATE yy_scan_buffer (char *base,yy_size_t size ); -YY_BUFFER_STATE yy_scan_string (yyconst char *yy_str ); -YY_BUFFER_STATE yy_scan_bytes (yyconst char *bytes,yy_size_t len ); - -void *yyalloc (yy_size_t ); -void *yyrealloc (void *,yy_size_t ); -void yyfree (void * ); +void *yyalloc ( yy_size_t ); +void *yyrealloc ( void *, yy_size_t ); +void yyfree ( void * ); #define yy_new_buffer yy_create_buffer - #define yy_set_interactive(is_interactive) \ { \ if ( ! YY_CURRENT_BUFFER ){ \ yyensure_buffer_stack (); \ YY_CURRENT_BUFFER_LVALUE = \ - yy_create_buffer(yyin,YY_BUF_SIZE ); \ + yy_create_buffer( yyin, YY_BUF_SIZE ); \ } \ YY_CURRENT_BUFFER_LVALUE->yy_is_interactive = is_interactive; \ } - #define yy_set_bol(at_bol) \ { \ if ( ! YY_CURRENT_BUFFER ){\ yyensure_buffer_stack (); \ YY_CURRENT_BUFFER_LVALUE = \ - yy_create_buffer(yyin,YY_BUF_SIZE ); \ + yy_create_buffer( yyin, YY_BUF_SIZE ); \ } \ YY_CURRENT_BUFFER_LVALUE->yy_at_bol = at_bol; \ } - #define YY_AT_BOL() (YY_CURRENT_BUFFER_LVALUE->yy_at_bol) /* Begin user sect3 */ +typedef flex_uint8_t YY_CHAR; -typedef unsigned char YY_CHAR; - -FILE *yyin = (FILE *) 0, *yyout = (FILE *) 0; +FILE *yyin = NULL, *yyout = NULL; typedef int yy_state_type; extern int yylineno; - int yylineno = 1; extern char *yytext; +#ifdef yytext_ptr +#undef yytext_ptr +#endif #define yytext_ptr yytext -static yy_state_type yy_get_previous_state (void ); -static yy_state_type yy_try_NUL_trans (yy_state_type current_state ); -static int yy_get_next_buffer (void ); -static void yy_fatal_error (yyconst char msg[] ); +static yy_state_type yy_get_previous_state ( void ); +static yy_state_type yy_try_NUL_trans ( yy_state_type current_state ); +static int yy_get_next_buffer ( void ); +static void yynoreturn yy_fatal_error ( const char* msg ); /* Done after the current pattern has been matched and before the * corresponding action - sets up yytext. */ #define YY_DO_BEFORE_ACTION \ (yytext_ptr) = yy_bp; \ - yyleng = (yy_size_t) (yy_cp - yy_bp); \ + yyleng = (int) (yy_cp - yy_bp); \ (yy_hold_char) = *yy_cp; \ *yy_cp = '\0'; \ (yy_c_buf_p) = yy_cp; - #define YY_NUM_RULES 107 #define YY_END_OF_BUFFER 108 /* This struct is not used in this scanner, @@ -370,7 +360,7 @@ struct yy_trans_info flex_int32_t yy_verify; flex_int32_t yy_nxt; }; -static yyconst flex_int16_t yy_accept[284] = +static const flex_int16_t yy_accept[284] = { 0, 0, 0, 0, 0, 90, 90, 108, 107, 105, 106, 72, 76, 12, 38, 107, 2, 3, 9, 13, 8, @@ -405,7 +395,7 @@ static yyconst flex_int16_t yy_accept[284] = 61, 48, 0 } ; -static yyconst flex_int32_t yy_ec[256] = +static const YY_CHAR yy_ec[256] = { 0, 1, 1, 1, 1, 1, 1, 1, 1, 2, 3, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, @@ -437,7 +427,7 @@ static yyconst flex_int32_t yy_ec[256] = 1, 1, 1, 1, 1 } ; -static yyconst flex_int32_t yy_meta[68] = +static const YY_CHAR yy_meta[68] = { 0, 1, 1, 2, 1, 3, 1, 1, 4, 1, 1, 5, 1, 1, 1, 6, 1, 7, 7, 7, 8, @@ -448,7 +438,7 @@ static yyconst flex_int32_t yy_meta[68] = 11, 10, 10, 1, 1, 1, 1 } ; -static yyconst flex_int16_t yy_base[299] = +static const flex_int16_t yy_base[299] = { 0, 0, 0, 65, 66, 69, 70, 614, 615, 615, 615, 589, 615, 588, 67, 574, 615, 615, 586, 63, 615, @@ -485,7 +475,7 @@ static yyconst flex_int16_t yy_base[299] = } ; -static yyconst flex_int16_t yy_def[299] = +static const flex_int16_t yy_def[299] = { 0, 283, 1, 284, 284, 285, 285, 283, 283, 283, 283, 283, 283, 283, 283, 286, 283, 283, 283, 283, 283, @@ -522,7 +512,7 @@ static yyconst flex_int16_t yy_def[299] = } ; -static yyconst flex_int16_t yy_nxt[683] = +static const flex_int16_t yy_nxt[683] = { 0, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 25, 25, @@ -601,7 +591,7 @@ static yyconst flex_int16_t yy_nxt[683] = 283, 283 } ; -static yyconst flex_int16_t yy_chk[683] = +static const flex_int16_t yy_chk[683] = { 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, @@ -694,8 +684,8 @@ int yy_flex_debug = 0; #define YY_MORE_ADJ 0 #define YY_RESTORE_YY_MORE_OFFSET char *yytext; -#line 1 "cod/cod.l" -#line 18 "cod/cod.l" +#line 1 "cod.l" +#line 18 "cod.l" static int lex_offset = 1; static int line_count = 1; static char *create_string_from_yytext(); @@ -752,8 +742,7 @@ extern int my_yy_input(); #endif static int -is_defined_type(id) -char *id; +is_defined_type(char *id) { int i = 0; while(types && types[i]) { @@ -764,8 +753,7 @@ char *id; } static int -is_enumeration_constant(id) -char *id; +is_enumeration_constant(char *id) { int i = 0; while(enums && enums[i]) { @@ -778,8 +766,9 @@ static void check_strbuf(); static int buffer_len; static char *string_buffer; static char *string_buf_ptr; +#line 769 "lex.yy.c" -#line 783 "/Users/eisen/prog/ffs/build/lex.yy.c" +#line 771 "lex.yy.c" #define INITIAL 0 #define string_cond 1 @@ -797,36 +786,36 @@ static char *string_buf_ptr; #define YY_EXTRA_TYPE void * #endif -static int yy_init_globals (void ); +static int yy_init_globals ( void ); /* Accessor methods to globals. These are made visible to non-reentrant scanners for convenience. */ -int yylex_destroy (void ); +int yylex_destroy ( void ); -int yyget_debug (void ); +int yyget_debug ( void ); -void yyset_debug (int debug_flag ); +void yyset_debug ( int debug_flag ); -YY_EXTRA_TYPE yyget_extra (void ); +YY_EXTRA_TYPE yyget_extra ( void ); -void yyset_extra (YY_EXTRA_TYPE user_defined ); +void yyset_extra ( YY_EXTRA_TYPE user_defined ); -FILE *yyget_in (void ); +FILE *yyget_in ( void ); -void yyset_in (FILE * in_str ); +void yyset_in ( FILE * _in_str ); -FILE *yyget_out (void ); +FILE *yyget_out ( void ); -void yyset_out (FILE * out_str ); +void yyset_out ( FILE * _out_str ); -yy_size_t yyget_leng (void ); + int yyget_leng ( void ); -char *yyget_text (void ); +char *yyget_text ( void ); -int yyget_lineno (void ); +int yyget_lineno ( void ); -void yyset_lineno (int line_number ); +void yyset_lineno ( int _line_number ); /* Macros after this point can all be overridden by user definitions in * section 1. @@ -834,35 +823,43 @@ void yyset_lineno (int line_number ); #ifndef YY_SKIP_YYWRAP #ifdef __cplusplus -extern "C" int yywrap (void ); +extern "C" int yywrap ( void ); #else -extern int yywrap (void ); +extern int yywrap ( void ); #endif #endif - static void yyunput (int c,char *buf_ptr ); +#ifndef YY_NO_UNPUT + + static void yyunput ( int c, char *buf_ptr ); +#endif + #ifndef yytext_ptr -static void yy_flex_strncpy (char *,yyconst char *,int ); +static void yy_flex_strncpy ( char *, const char *, int ); #endif #ifdef YY_NEED_STRLEN -static int yy_flex_strlen (yyconst char * ); +static int yy_flex_strlen ( const char * ); #endif #ifndef YY_NO_INPUT - #ifdef __cplusplus -static int yyinput (void ); +static int yyinput ( void ); #else -static int input (void ); +static int input ( void ); #endif #endif /* Amount of stuff to slurp up with each read. */ #ifndef YY_READ_BUF_SIZE +#ifdef __ia64__ +/* On IA-64, the buffer size is 16k, not 8k */ +#define YY_READ_BUF_SIZE 16384 +#else #define YY_READ_BUF_SIZE 8192 +#endif /* __ia64__ */ #endif /* Copy whatever the last rule matched to the standard output. */ @@ -870,7 +867,7 @@ static int input (void ); /* This used to be an fputs(), but since the string might contain NUL's, * we now use fwrite(). */ -#define ECHO fwrite( yytext, yyleng, 1, yyout ) +#define ECHO do { if (fwrite( yytext, (size_t) yyleng, 1, yyout )) {} } while (0) #endif /* Gets input and stuffs it into "buf". number of characters read, or YY_NULL, @@ -881,7 +878,7 @@ static int input (void ); if ( YY_CURRENT_BUFFER_LVALUE->yy_is_interactive ) \ { \ int c = '*'; \ - yy_size_t n; \ + int n; \ for ( n = 0; n < max_size && \ (c = getc( yyin )) != EOF && c != '\n'; ++n ) \ buf[n] = (char) c; \ @@ -894,7 +891,7 @@ static int input (void ); else \ { \ errno=0; \ - while ( (result = fread(buf, 1, max_size, yyin))==0 && ferror(yyin)) \ + while ( (result = (int) fread(buf, 1, (yy_size_t) max_size, yyin)) == 0 && ferror(yyin)) \ { \ if( errno != EINTR) \ { \ @@ -949,7 +946,7 @@ extern int yylex (void); /* Code executed at the end of each rule. */ #ifndef YY_BREAK -#define YY_BREAK break; +#define YY_BREAK /*LINTED*/break; #endif #define YY_RULE_SETUP \ @@ -959,16 +956,10 @@ extern int yylex (void); */ YY_DECL { - register yy_state_type yy_current_state; - register char *yy_cp, *yy_bp; - register int yy_act; + yy_state_type yy_current_state; + char *yy_cp, *yy_bp; + int yy_act; -#line 103 "cod/cod.l" - - - -#line 971 "/Users/eisen/prog/ffs/build/lex.yy.c" - if ( !(yy_init) ) { (yy_init) = 1; @@ -989,13 +980,20 @@ YY_DECL if ( ! YY_CURRENT_BUFFER ) { yyensure_buffer_stack (); YY_CURRENT_BUFFER_LVALUE = - yy_create_buffer(yyin,YY_BUF_SIZE ); + yy_create_buffer( yyin, YY_BUF_SIZE ); } - yy_load_buffer_state( ); + yy_load_buffer_state( ); } - while ( 1 ) /* loops until end-of-file is reached */ + { +#line 101 "cod.l" + + + +#line 994 "lex.yy.c" + + while ( /*CONSTCOND*/1 ) /* loops until end-of-file is reached */ { yy_cp = (yy_c_buf_p); @@ -1011,7 +1009,7 @@ YY_DECL yy_match: do { - register YY_CHAR yy_c = yy_ec[YY_SC_TO_UI(*yy_cp)]; + YY_CHAR yy_c = yy_ec[YY_SC_TO_UI(*yy_cp)] ; if ( yy_accept[yy_current_state] ) { (yy_last_accepting_state) = yy_current_state; @@ -1021,9 +1019,9 @@ YY_DECL { yy_current_state = (int) yy_def[yy_current_state]; if ( yy_current_state >= 284 ) - yy_c = yy_meta[(unsigned int) yy_c]; + yy_c = yy_meta[yy_c]; } - yy_current_state = yy_nxt[yy_base[yy_current_state] + (unsigned int) yy_c]; + yy_current_state = yy_nxt[yy_base[yy_current_state] + yy_c]; ++yy_cp; } while ( yy_base[yy_current_state] != 615 ); @@ -1052,352 +1050,352 @@ YY_DECL case 1: YY_RULE_SETUP -#line 106 "cod/cod.l" +#line 104 "cod.l" {RETURN(ARROW);} YY_BREAK case 2: YY_RULE_SETUP -#line 107 "cod/cod.l" +#line 105 "cod.l" {RETURN(LPAREN);} YY_BREAK case 3: YY_RULE_SETUP -#line 108 "cod/cod.l" +#line 106 "cod.l" {RETURN(RPAREN);} YY_BREAK case 4: YY_RULE_SETUP -#line 109 "cod/cod.l" +#line 107 "cod.l" {RETURN(LBRACKET);} YY_BREAK case 5: YY_RULE_SETUP -#line 110 "cod/cod.l" +#line 108 "cod.l" {RETURN(RBRACKET);} YY_BREAK case 6: YY_RULE_SETUP -#line 111 "cod/cod.l" +#line 109 "cod.l" {RETURN(DOTDOTDOT);} YY_BREAK case 7: YY_RULE_SETUP -#line 112 "cod/cod.l" +#line 110 "cod.l" {RETURN(DOT);} YY_BREAK case 8: YY_RULE_SETUP -#line 113 "cod/cod.l" +#line 111 "cod.l" {RETURN(COMMA);} YY_BREAK case 9: YY_RULE_SETUP -#line 114 "cod/cod.l" +#line 112 "cod.l" {RETURN(STAR);} YY_BREAK case 10: YY_RULE_SETUP -#line 115 "cod/cod.l" +#line 113 "cod.l" {RETURN(AT);} YY_BREAK case 11: YY_RULE_SETUP -#line 116 "cod/cod.l" +#line 114 "cod.l" {RETURN(SLASH);} YY_BREAK case 12: YY_RULE_SETUP -#line 117 "cod/cod.l" +#line 115 "cod.l" {RETURN(MODULUS);} YY_BREAK case 13: YY_RULE_SETUP -#line 118 "cod/cod.l" +#line 116 "cod.l" {RETURN(PLUS);} YY_BREAK case 14: YY_RULE_SETUP -#line 119 "cod/cod.l" +#line 117 "cod.l" {RETURN(MINUS);} YY_BREAK case 15: YY_RULE_SETUP -#line 120 "cod/cod.l" +#line 118 "cod.l" {RETURN(TILDE);} YY_BREAK case 16: YY_RULE_SETUP -#line 121 "cod/cod.l" +#line 119 "cod.l" {RETURN(LEQ);} YY_BREAK case 17: YY_RULE_SETUP -#line 122 "cod/cod.l" +#line 120 "cod.l" {RETURN(LT);} YY_BREAK case 18: YY_RULE_SETUP -#line 123 "cod/cod.l" +#line 121 "cod.l" {RETURN(GEQ);} YY_BREAK case 19: YY_RULE_SETUP -#line 124 "cod/cod.l" +#line 122 "cod.l" {RETURN(GT);} YY_BREAK case 20: YY_RULE_SETUP -#line 125 "cod/cod.l" +#line 123 "cod.l" {RETURN(LEFT_SHIFT);} YY_BREAK case 21: YY_RULE_SETUP -#line 126 "cod/cod.l" +#line 124 "cod.l" {RETURN(RIGHT_SHIFT);} YY_BREAK case 22: YY_RULE_SETUP -#line 127 "cod/cod.l" +#line 125 "cod.l" {RETURN(EQ);} YY_BREAK case 23: YY_RULE_SETUP -#line 128 "cod/cod.l" +#line 126 "cod.l" {RETURN(NEQ);} YY_BREAK case 24: YY_RULE_SETUP -#line 129 "cod/cod.l" +#line 127 "cod.l" {RETURN(ASSIGN);} YY_BREAK case 25: YY_RULE_SETUP -#line 130 "cod/cod.l" +#line 128 "cod.l" {RETURN(MUL_ASSIGN);} YY_BREAK case 26: YY_RULE_SETUP -#line 131 "cod/cod.l" +#line 129 "cod.l" {RETURN(DIV_ASSIGN);} YY_BREAK case 27: YY_RULE_SETUP -#line 132 "cod/cod.l" +#line 130 "cod.l" {RETURN(MOD_ASSIGN);} YY_BREAK case 28: YY_RULE_SETUP -#line 133 "cod/cod.l" +#line 131 "cod.l" {RETURN(ADD_ASSIGN);} YY_BREAK case 29: YY_RULE_SETUP -#line 134 "cod/cod.l" +#line 132 "cod.l" {RETURN(SUB_ASSIGN);} YY_BREAK case 30: YY_RULE_SETUP -#line 135 "cod/cod.l" +#line 133 "cod.l" {RETURN(LEFT_ASSIGN);} YY_BREAK case 31: YY_RULE_SETUP -#line 136 "cod/cod.l" +#line 134 "cod.l" {RETURN(RIGHT_ASSIGN);} YY_BREAK case 32: YY_RULE_SETUP -#line 137 "cod/cod.l" +#line 135 "cod.l" {RETURN(AND_ASSIGN);} YY_BREAK case 33: YY_RULE_SETUP -#line 138 "cod/cod.l" +#line 136 "cod.l" {RETURN(XOR_ASSIGN);} YY_BREAK case 34: YY_RULE_SETUP -#line 139 "cod/cod.l" +#line 137 "cod.l" {RETURN(OR_ASSIGN);} YY_BREAK case 35: YY_RULE_SETUP -#line 140 "cod/cod.l" +#line 138 "cod.l" {RETURN(LOG_OR);} YY_BREAK case 36: YY_RULE_SETUP -#line 141 "cod/cod.l" +#line 139 "cod.l" {RETURN(LOG_AND);} YY_BREAK case 37: YY_RULE_SETUP -#line 142 "cod/cod.l" +#line 140 "cod.l" {RETURN(ARITH_OR);} YY_BREAK case 38: YY_RULE_SETUP -#line 143 "cod/cod.l" +#line 141 "cod.l" {RETURN(ARITH_AND);} YY_BREAK case 39: YY_RULE_SETUP -#line 144 "cod/cod.l" +#line 142 "cod.l" {RETURN(ARITH_XOR);} YY_BREAK case 40: YY_RULE_SETUP -#line 145 "cod/cod.l" +#line 143 "cod.l" {RETURN(INC_OP);} YY_BREAK case 41: YY_RULE_SETUP -#line 146 "cod/cod.l" +#line 144 "cod.l" {RETURN(DEC_OP);} YY_BREAK case 42: YY_RULE_SETUP -#line 147 "cod/cod.l" +#line 145 "cod.l" {RETURN(SEMI);} YY_BREAK case 43: YY_RULE_SETUP -#line 148 "cod/cod.l" +#line 146 "cod.l" {RETURN(IF);} YY_BREAK case 44: YY_RULE_SETUP -#line 149 "cod/cod.l" +#line 147 "cod.l" {RETURN(ELSE);} YY_BREAK case 45: YY_RULE_SETUP -#line 150 "cod/cod.l" +#line 148 "cod.l" {RETURN(FOR);} YY_BREAK case 46: YY_RULE_SETUP -#line 151 "cod/cod.l" +#line 149 "cod.l" {RETURN(WHILE);} YY_BREAK case 47: YY_RULE_SETUP -#line 152 "cod/cod.l" +#line 150 "cod.l" {RETURN(DO);} YY_BREAK case 48: YY_RULE_SETUP -#line 153 "cod/cod.l" +#line 151 "cod.l" {RETURN(UNSIGNED);} YY_BREAK case 49: YY_RULE_SETUP -#line 154 "cod/cod.l" +#line 152 "cod.l" {RETURN(SIGNED);} YY_BREAK case 50: YY_RULE_SETUP -#line 155 "cod/cod.l" +#line 153 "cod.l" {RETURN(SHORT);} YY_BREAK case 51: YY_RULE_SETUP -#line 156 "cod/cod.l" +#line 154 "cod.l" {RETURN(INT);} YY_BREAK case 52: YY_RULE_SETUP -#line 157 "cod/cod.l" +#line 155 "cod.l" {RETURN(LONG);} YY_BREAK case 53: YY_RULE_SETUP -#line 158 "cod/cod.l" +#line 156 "cod.l" {RETURN(CHAR);} YY_BREAK case 54: YY_RULE_SETUP -#line 159 "cod/cod.l" +#line 157 "cod.l" {RETURN(STRING);} YY_BREAK case 55: YY_RULE_SETUP -#line 160 "cod/cod.l" +#line 158 "cod.l" {RETURN(FLOAT);} YY_BREAK case 56: YY_RULE_SETUP -#line 161 "cod/cod.l" +#line 159 "cod.l" {RETURN(DOUBLE);} YY_BREAK case 57: YY_RULE_SETUP -#line 162 "cod/cod.l" +#line 160 "cod.l" {RETURN(VOID);} YY_BREAK case 58: YY_RULE_SETUP -#line 163 "cod/cod.l" +#line 161 "cod.l" {RETURN(STATIC);} YY_BREAK case 59: YY_RULE_SETUP -#line 164 "cod/cod.l" +#line 162 "cod.l" {RETURN(EXTERN_TOKEN);} YY_BREAK case 60: YY_RULE_SETUP -#line 165 "cod/cod.l" +#line 163 "cod.l" {RETURN(TYPEDEF);} YY_BREAK case 61: YY_RULE_SETUP -#line 166 "cod/cod.l" +#line 164 "cod.l" {RETURN(CONTINUE);} YY_BREAK case 62: YY_RULE_SETUP -#line 167 "cod/cod.l" +#line 165 "cod.l" {RETURN(BREAK);} YY_BREAK case 63: YY_RULE_SETUP -#line 168 "cod/cod.l" +#line 166 "cod.l" {RETURN(GOTO);} YY_BREAK case 64: YY_RULE_SETUP -#line 169 "cod/cod.l" +#line 167 "cod.l" {RETURN(CONST);} YY_BREAK case 65: YY_RULE_SETUP -#line 170 "cod/cod.l" +#line 168 "cod.l" {RETURN(SIZEOF);} YY_BREAK case 66: YY_RULE_SETUP -#line 171 "cod/cod.l" +#line 169 "cod.l" {RETURN(STRUCT);} YY_BREAK case 67: YY_RULE_SETUP -#line 172 "cod/cod.l" +#line 170 "cod.l" {RETURN(ENUM);} YY_BREAK case 68: YY_RULE_SETUP -#line 173 "cod/cod.l" +#line 171 "cod.l" {RETURN(UNION);} YY_BREAK case 69: YY_RULE_SETUP -#line 174 "cod/cod.l" +#line 172 "cod.l" {RETURN(RETURN_TOKEN);} YY_BREAK case 70: YY_RULE_SETUP -#line 175 "cod/cod.l" +#line 173 "cod.l" { int count = 0; while(types && types[count]) count++; @@ -1407,27 +1405,27 @@ YY_RULE_SETUP YY_BREAK case 71: YY_RULE_SETUP -#line 181 "cod/cod.l" +#line 179 "cod.l" {RETURN(RCURLY);} YY_BREAK case 72: YY_RULE_SETUP -#line 182 "cod/cod.l" +#line 180 "cod.l" {RETURN(BANG);} YY_BREAK case 73: YY_RULE_SETUP -#line 183 "cod/cod.l" +#line 181 "cod.l" {RETURN(COLON);} YY_BREAK case 74: YY_RULE_SETUP -#line 184 "cod/cod.l" +#line 182 "cod.l" {RETURN(QUESTION);} YY_BREAK case 75: YY_RULE_SETUP -#line 185 "cod/cod.l" +#line 183 "cod.l" { yylval.info.string = create_string_from_yytext(); if (is_defined_type(yylval.info.string)) { @@ -1441,7 +1439,7 @@ YY_RULE_SETUP YY_BREAK case 76: YY_RULE_SETUP -#line 196 "cod/cod.l" +#line 194 "cod.l" { buffer_len = 20; string_buffer = malloc(20 + 1); @@ -1450,7 +1448,7 @@ YY_RULE_SETUP YY_BREAK case 77: YY_RULE_SETUP -#line 202 "cod/cod.l" +#line 200 "cod.l" { /* saw closing quote - all done */ BEGIN(INITIAL); *string_buf_ptr = '\0'; @@ -1464,14 +1462,14 @@ YY_RULE_SETUP case 78: /* rule 78 can match eol */ YY_RULE_SETUP -#line 212 "cod/cod.l" +#line 210 "cod.l" { yyerror("Unterminated string constant"); } YY_BREAK case 79: YY_RULE_SETUP -#line 216 "cod/cod.l" +#line 214 "cod.l" { /* hex escape sequence */ int result; @@ -1488,7 +1486,7 @@ YY_RULE_SETUP YY_BREAK case 80: YY_RULE_SETUP -#line 230 "cod/cod.l" +#line 228 "cod.l" { /* octal escape sequence */ int result; @@ -1505,45 +1503,45 @@ YY_RULE_SETUP YY_BREAK case 81: YY_RULE_SETUP -#line 244 "cod/cod.l" +#line 242 "cod.l" { yyerror("bad character escape"); } YY_BREAK case 82: YY_RULE_SETUP -#line 248 "cod/cod.l" +#line 246 "cod.l" {check_strbuf();*string_buf_ptr++ = '\n';} YY_BREAK case 83: YY_RULE_SETUP -#line 249 "cod/cod.l" +#line 247 "cod.l" {check_strbuf();*string_buf_ptr++ = '\t';} YY_BREAK case 84: YY_RULE_SETUP -#line 250 "cod/cod.l" +#line 248 "cod.l" {check_strbuf();*string_buf_ptr++ = '\r';} YY_BREAK case 85: YY_RULE_SETUP -#line 251 "cod/cod.l" +#line 249 "cod.l" {check_strbuf();*string_buf_ptr++ = '\b';} YY_BREAK case 86: YY_RULE_SETUP -#line 252 "cod/cod.l" +#line 250 "cod.l" {check_strbuf();*string_buf_ptr++ = '\f';} YY_BREAK case 87: /* rule 87 can match eol */ YY_RULE_SETUP -#line 254 "cod/cod.l" +#line 252 "cod.l" {check_strbuf();*string_buf_ptr++ = yytext[1];} YY_BREAK case 88: YY_RULE_SETUP -#line 256 "cod/cod.l" +#line 254 "cod.l" { char *yptr = yytext; @@ -1555,38 +1553,38 @@ YY_RULE_SETUP YY_BREAK case 89: YY_RULE_SETUP -#line 267 "cod/cod.l" +#line 265 "cod.l" BEGIN(comment); YY_BREAK case 90: YY_RULE_SETUP -#line 269 "cod/cod.l" +#line 267 "cod.l" {lex_offset += yyleng;} /* eat anything that's not a '*' */ YY_BREAK case 91: YY_RULE_SETUP -#line 270 "cod/cod.l" +#line 268 "cod.l" {lex_offset += yyleng;} /* eat up '*'s not followed by '/'s */ YY_BREAK case 92: /* rule 92 can match eol */ YY_RULE_SETUP -#line 271 "cod/cod.l" +#line 269 "cod.l" {++line_count;lex_offset = 1;} YY_BREAK case 93: YY_RULE_SETUP -#line 272 "cod/cod.l" +#line 270 "cod.l" {lex_offset += yyleng;BEGIN(INITIAL);} YY_BREAK case 94: YY_RULE_SETUP -#line 273 "cod/cod.l" +#line 271 "cod.l" { /* consume //-comment */ } YY_BREAK case 95: YY_RULE_SETUP -#line 275 "cod/cod.l" +#line 273 "cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(character_constant); @@ -1594,7 +1592,7 @@ YY_RULE_SETUP YY_BREAK case 96: YY_RULE_SETUP -#line 279 "cod/cod.l" +#line 277 "cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(integer_constant); @@ -1602,7 +1600,7 @@ YY_RULE_SETUP YY_BREAK case 97: YY_RULE_SETUP -#line 283 "cod/cod.l" +#line 281 "cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(integer_constant); @@ -1610,7 +1608,7 @@ YY_RULE_SETUP YY_BREAK case 98: YY_RULE_SETUP -#line 288 "cod/cod.l" +#line 286 "cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(integer_constant); @@ -1618,7 +1616,7 @@ YY_RULE_SETUP YY_BREAK case 99: YY_RULE_SETUP -#line 293 "cod/cod.l" +#line 291 "cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(floating_constant); @@ -1626,7 +1624,7 @@ YY_RULE_SETUP YY_BREAK case 100: YY_RULE_SETUP -#line 297 "cod/cod.l" +#line 295 "cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(floating_constant); @@ -1634,7 +1632,7 @@ YY_RULE_SETUP YY_BREAK case 101: YY_RULE_SETUP -#line 301 "cod/cod.l" +#line 299 "cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(floating_constant); @@ -1642,7 +1640,7 @@ YY_RULE_SETUP YY_BREAK case 102: YY_RULE_SETUP -#line 305 "cod/cod.l" +#line 303 "cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(floating_constant); @@ -1650,7 +1648,7 @@ YY_RULE_SETUP YY_BREAK case 103: YY_RULE_SETUP -#line 310 "cod/cod.l" +#line 308 "cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(floating_constant); @@ -1658,7 +1656,7 @@ YY_RULE_SETUP YY_BREAK case 104: YY_RULE_SETUP -#line 315 "cod/cod.l" +#line 313 "cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(floating_constant); @@ -1666,21 +1664,21 @@ YY_RULE_SETUP YY_BREAK case 105: YY_RULE_SETUP -#line 320 "cod/cod.l" +#line 318 "cod.l" {lex_offset += yyleng;} YY_BREAK case 106: /* rule 106 can match eol */ YY_RULE_SETUP -#line 321 "cod/cod.l" +#line 319 "cod.l" {lex_offset = 1; line_count++;} YY_BREAK case 107: YY_RULE_SETUP -#line 322 "cod/cod.l" +#line 320 "cod.l" ECHO; YY_BREAK -#line 1684 "/Users/eisen/prog/ffs/build/lex.yy.c" +#line 1681 "lex.yy.c" case YY_STATE_EOF(INITIAL): case YY_STATE_EOF(string_cond): case YY_STATE_EOF(comment): @@ -1760,7 +1758,7 @@ case YY_STATE_EOF(comment): { (yy_did_buffer_switch_on_eof) = 0; - if ( yywrap( ) ) + if ( yywrap( ) ) { /* Note: because we've taken care in * yy_get_next_buffer() to have set up @@ -1813,6 +1811,7 @@ case YY_STATE_EOF(comment): "fatal flex scanner internal error--no action found" ); } /* end of action switch */ } /* end of scanning one token */ + } /* end of user's declarations */ } /* end of yylex */ /* yy_get_next_buffer - try to read in a new buffer @@ -1824,9 +1823,9 @@ case YY_STATE_EOF(comment): */ static int yy_get_next_buffer (void) { - register char *dest = YY_CURRENT_BUFFER_LVALUE->yy_ch_buf; - register char *source = (yytext_ptr); - register int number_to_move, i; + char *dest = YY_CURRENT_BUFFER_LVALUE->yy_ch_buf; + char *source = (yytext_ptr); + int number_to_move, i; int ret_val; if ( (yy_c_buf_p) > &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[(yy_n_chars) + 1] ) @@ -1855,7 +1854,7 @@ static int yy_get_next_buffer (void) /* Try to read more data. */ /* First move last chars to start of buffer. */ - number_to_move = (int) ((yy_c_buf_p) - (yytext_ptr)) - 1; + number_to_move = (int) ((yy_c_buf_p) - (yytext_ptr) - 1); for ( i = 0; i < number_to_move; ++i ) *(dest++) = *(source++); @@ -1868,21 +1867,21 @@ static int yy_get_next_buffer (void) else { - yy_size_t num_to_read = + int num_to_read = YY_CURRENT_BUFFER_LVALUE->yy_buf_size - number_to_move - 1; while ( num_to_read <= 0 ) { /* Not enough room in the buffer - grow it. */ /* just a shorter name for the current buffer */ - YY_BUFFER_STATE b = YY_CURRENT_BUFFER; + YY_BUFFER_STATE b = YY_CURRENT_BUFFER_LVALUE; int yy_c_buf_p_offset = (int) ((yy_c_buf_p) - b->yy_ch_buf); if ( b->yy_is_our_buffer ) { - yy_size_t new_size = b->yy_buf_size * 2; + int new_size = b->yy_buf_size * 2; if ( new_size <= 0 ) b->yy_buf_size += b->yy_buf_size / 8; @@ -1891,11 +1890,12 @@ static int yy_get_next_buffer (void) b->yy_ch_buf = (char *) /* Include room in for 2 EOB chars. */ - yyrealloc((void *) b->yy_ch_buf,b->yy_buf_size + 2 ); + yyrealloc( (void *) b->yy_ch_buf, + (yy_size_t) (b->yy_buf_size + 2) ); } else /* Can't grow it, we don't own it. */ - b->yy_ch_buf = 0; + b->yy_ch_buf = NULL; if ( ! b->yy_ch_buf ) YY_FATAL_ERROR( @@ -1923,7 +1923,7 @@ static int yy_get_next_buffer (void) if ( number_to_move == YY_MORE_ADJ ) { ret_val = EOB_ACT_END_OF_FILE; - yyrestart(yyin ); + yyrestart( yyin ); } else @@ -1937,12 +1937,15 @@ static int yy_get_next_buffer (void) else ret_val = EOB_ACT_CONTINUE_SCAN; - if ((yy_size_t) ((yy_n_chars) + number_to_move) > YY_CURRENT_BUFFER_LVALUE->yy_buf_size) { + if (((yy_n_chars) + number_to_move) > YY_CURRENT_BUFFER_LVALUE->yy_buf_size) { /* Extend the array by 50%, plus the number we really need. */ - yy_size_t new_size = (yy_n_chars) + number_to_move + ((yy_n_chars) >> 1); - YY_CURRENT_BUFFER_LVALUE->yy_ch_buf = (char *) yyrealloc((void *) YY_CURRENT_BUFFER_LVALUE->yy_ch_buf,new_size ); + int new_size = (yy_n_chars) + number_to_move + ((yy_n_chars) >> 1); + YY_CURRENT_BUFFER_LVALUE->yy_ch_buf = (char *) yyrealloc( + (void *) YY_CURRENT_BUFFER_LVALUE->yy_ch_buf, (yy_size_t) new_size ); if ( ! YY_CURRENT_BUFFER_LVALUE->yy_ch_buf ) YY_FATAL_ERROR( "out of dynamic memory in yy_get_next_buffer()" ); + /* "- 2" to take care of EOB's */ + YY_CURRENT_BUFFER_LVALUE->yy_buf_size = (int) (new_size - 2); } (yy_n_chars) += number_to_move; @@ -1958,14 +1961,14 @@ static int yy_get_next_buffer (void) static yy_state_type yy_get_previous_state (void) { - register yy_state_type yy_current_state; - register char *yy_cp; + yy_state_type yy_current_state; + char *yy_cp; yy_current_state = (yy_start); for ( yy_cp = (yytext_ptr) + YY_MORE_ADJ; yy_cp < (yy_c_buf_p); ++yy_cp ) { - register YY_CHAR yy_c = (*yy_cp ? yy_ec[YY_SC_TO_UI(*yy_cp)] : 1); + YY_CHAR yy_c = (*yy_cp ? yy_ec[YY_SC_TO_UI(*yy_cp)] : 1); if ( yy_accept[yy_current_state] ) { (yy_last_accepting_state) = yy_current_state; @@ -1975,9 +1978,9 @@ static int yy_get_next_buffer (void) { yy_current_state = (int) yy_def[yy_current_state]; if ( yy_current_state >= 284 ) - yy_c = yy_meta[(unsigned int) yy_c]; + yy_c = yy_meta[yy_c]; } - yy_current_state = yy_nxt[yy_base[yy_current_state] + (unsigned int) yy_c]; + yy_current_state = yy_nxt[yy_base[yy_current_state] + yy_c]; } return yy_current_state; @@ -1990,10 +1993,10 @@ static int yy_get_next_buffer (void) */ static yy_state_type yy_try_NUL_trans (yy_state_type yy_current_state ) { - register int yy_is_jam; - register char *yy_cp = (yy_c_buf_p); + int yy_is_jam; + char *yy_cp = (yy_c_buf_p); - register YY_CHAR yy_c = 1; + YY_CHAR yy_c = 1; if ( yy_accept[yy_current_state] ) { (yy_last_accepting_state) = yy_current_state; @@ -2003,17 +2006,19 @@ static int yy_get_next_buffer (void) { yy_current_state = (int) yy_def[yy_current_state]; if ( yy_current_state >= 284 ) - yy_c = yy_meta[(unsigned int) yy_c]; + yy_c = yy_meta[yy_c]; } - yy_current_state = yy_nxt[yy_base[yy_current_state] + (unsigned int) yy_c]; + yy_current_state = yy_nxt[yy_base[yy_current_state] + yy_c]; yy_is_jam = (yy_current_state == 283); - return yy_is_jam ? 0 : yy_current_state; + return yy_is_jam ? 0 : yy_current_state; } - static void yyunput (int c, register char * yy_bp ) +#ifndef YY_NO_UNPUT + + static void yyunput (int c, char * yy_bp ) { - register char *yy_cp; + char *yy_cp; yy_cp = (yy_c_buf_p); @@ -2023,10 +2028,10 @@ static int yy_get_next_buffer (void) if ( yy_cp < YY_CURRENT_BUFFER_LVALUE->yy_ch_buf + 2 ) { /* need to shift things up to make room */ /* +2 for EOB chars. */ - register yy_size_t number_to_move = (yy_n_chars) + 2; - register char *dest = &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[ + int number_to_move = (yy_n_chars) + 2; + char *dest = &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[ YY_CURRENT_BUFFER_LVALUE->yy_buf_size + 2]; - register char *source = + char *source = &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[number_to_move]; while ( source > YY_CURRENT_BUFFER_LVALUE->yy_ch_buf ) @@ -2035,7 +2040,7 @@ static int yy_get_next_buffer (void) yy_cp += (int) (dest - source); yy_bp += (int) (dest - source); YY_CURRENT_BUFFER_LVALUE->yy_n_chars = - (yy_n_chars) = YY_CURRENT_BUFFER_LVALUE->yy_buf_size; + (yy_n_chars) = (int) YY_CURRENT_BUFFER_LVALUE->yy_buf_size; if ( yy_cp < YY_CURRENT_BUFFER_LVALUE->yy_ch_buf + 2 ) YY_FATAL_ERROR( "flex scanner push-back overflow" ); @@ -2048,6 +2053,8 @@ static int yy_get_next_buffer (void) (yy_c_buf_p) = yy_cp; } +#endif + #ifndef YY_NO_INPUT #ifdef __cplusplus static int yyinput (void) @@ -2072,7 +2079,7 @@ static int yy_get_next_buffer (void) else { /* need more input */ - yy_size_t offset = (yy_c_buf_p) - (yytext_ptr); + int offset = (int) ((yy_c_buf_p) - (yytext_ptr)); ++(yy_c_buf_p); switch ( yy_get_next_buffer( ) ) @@ -2089,13 +2096,13 @@ static int yy_get_next_buffer (void) */ /* Reset buffer status. */ - yyrestart(yyin ); + yyrestart( yyin ); /*FALLTHROUGH*/ case EOB_ACT_END_OF_FILE: { - if ( yywrap( ) ) + if ( yywrap( ) ) return 0; if ( ! (yy_did_buffer_switch_on_eof) ) @@ -2133,11 +2140,11 @@ static int yy_get_next_buffer (void) if ( ! YY_CURRENT_BUFFER ){ yyensure_buffer_stack (); YY_CURRENT_BUFFER_LVALUE = - yy_create_buffer(yyin,YY_BUF_SIZE ); + yy_create_buffer( yyin, YY_BUF_SIZE ); } - yy_init_buffer(YY_CURRENT_BUFFER,input_file ); - yy_load_buffer_state( ); + yy_init_buffer( YY_CURRENT_BUFFER, input_file ); + yy_load_buffer_state( ); } /** Switch to a different input buffer. @@ -2165,7 +2172,7 @@ static int yy_get_next_buffer (void) } YY_CURRENT_BUFFER_LVALUE = new_buffer; - yy_load_buffer_state( ); + yy_load_buffer_state( ); /* We don't actually know whether we did this switch during * EOF (yywrap()) processing, but the only time this flag @@ -2193,7 +2200,7 @@ static void yy_load_buffer_state (void) { YY_BUFFER_STATE b; - b = (YY_BUFFER_STATE) yyalloc(sizeof( struct yy_buffer_state ) ); + b = (YY_BUFFER_STATE) yyalloc( sizeof( struct yy_buffer_state ) ); if ( ! b ) YY_FATAL_ERROR( "out of dynamic memory in yy_create_buffer()" ); @@ -2202,13 +2209,13 @@ static void yy_load_buffer_state (void) /* yy_ch_buf has to be 2 characters longer than the size given because * we need to put in 2 end-of-buffer characters. */ - b->yy_ch_buf = (char *) yyalloc(b->yy_buf_size + 2 ); + b->yy_ch_buf = (char *) yyalloc( (yy_size_t) (b->yy_buf_size + 2) ); if ( ! b->yy_ch_buf ) YY_FATAL_ERROR( "out of dynamic memory in yy_create_buffer()" ); b->yy_is_our_buffer = 1; - yy_init_buffer(b,file ); + yy_init_buffer( b, file ); return b; } @@ -2227,15 +2234,11 @@ static void yy_load_buffer_state (void) YY_CURRENT_BUFFER_LVALUE = (YY_BUFFER_STATE) 0; if ( b->yy_is_our_buffer ) - yyfree((void *) b->yy_ch_buf ); + yyfree( (void *) b->yy_ch_buf ); - yyfree((void *) b ); + yyfree( (void *) b ); } -#ifndef __cplusplus -extern int isatty (int ); -#endif /* __cplusplus */ - /* Initializes or reinitializes a buffer. * This function is sometimes called more than once on the same buffer, * such as during a yyrestart() or at EOF. @@ -2245,7 +2248,7 @@ extern int isatty (int ); { int oerrno = errno; - yy_flush_buffer(b ); + yy_flush_buffer( b ); b->yy_input_file = file; b->yy_fill_buffer = 1; @@ -2288,7 +2291,7 @@ extern int isatty (int ); b->yy_buffer_status = YY_BUFFER_NEW; if ( b == YY_CURRENT_BUFFER ) - yy_load_buffer_state( ); + yy_load_buffer_state( ); } /** Pushes the new state onto the stack. The new state becomes @@ -2319,7 +2322,7 @@ void yypush_buffer_state (YY_BUFFER_STATE new_buffer ) YY_CURRENT_BUFFER_LVALUE = new_buffer; /* copied from yy_switch_to_buffer. */ - yy_load_buffer_state( ); + yy_load_buffer_state( ); (yy_did_buffer_switch_on_eof) = 1; } @@ -2338,7 +2341,7 @@ void yypop_buffer_state (void) --(yy_buffer_stack_top); if (YY_CURRENT_BUFFER) { - yy_load_buffer_state( ); + yy_load_buffer_state( ); (yy_did_buffer_switch_on_eof) = 1; } } @@ -2356,15 +2359,15 @@ static void yyensure_buffer_stack (void) * scanner will even need a stack. We use 2 instead of 1 to avoid an * immediate realloc on the next call. */ - num_to_alloc = 1; + num_to_alloc = 1; /* After all that talk, this was set to 1 anyways... */ (yy_buffer_stack) = (struct yy_buffer_state**)yyalloc (num_to_alloc * sizeof(struct yy_buffer_state*) ); if ( ! (yy_buffer_stack) ) YY_FATAL_ERROR( "out of dynamic memory in yyensure_buffer_stack()" ); - + memset((yy_buffer_stack), 0, num_to_alloc * sizeof(struct yy_buffer_state*)); - + (yy_buffer_stack_max) = num_to_alloc; (yy_buffer_stack_top) = 0; return; @@ -2373,7 +2376,7 @@ static void yyensure_buffer_stack (void) if ((yy_buffer_stack_top) >= ((yy_buffer_stack_max)) - 1){ /* Increase the buffer to prepare for a possible push. */ - int grow_size = 8 /* arbitrary grow size */; + yy_size_t grow_size = 8 /* arbitrary grow size */; num_to_alloc = (yy_buffer_stack_max) + grow_size; (yy_buffer_stack) = (struct yy_buffer_state**)yyrealloc @@ -2393,7 +2396,7 @@ static void yyensure_buffer_stack (void) * @param base the character buffer * @param size the size in bytes of the character buffer * - * @return the newly allocated buffer state object. + * @return the newly allocated buffer state object. */ YY_BUFFER_STATE yy_scan_buffer (char * base, yy_size_t size ) { @@ -2403,23 +2406,23 @@ YY_BUFFER_STATE yy_scan_buffer (char * base, yy_size_t size ) base[size-2] != YY_END_OF_BUFFER_CHAR || base[size-1] != YY_END_OF_BUFFER_CHAR ) /* They forgot to leave room for the EOB's. */ - return 0; + return NULL; - b = (YY_BUFFER_STATE) yyalloc(sizeof( struct yy_buffer_state ) ); + b = (YY_BUFFER_STATE) yyalloc( sizeof( struct yy_buffer_state ) ); if ( ! b ) YY_FATAL_ERROR( "out of dynamic memory in yy_scan_buffer()" ); - b->yy_buf_size = size - 2; /* "- 2" to take care of EOB's */ + b->yy_buf_size = (int) (size - 2); /* "- 2" to take care of EOB's */ b->yy_buf_pos = b->yy_ch_buf = base; b->yy_is_our_buffer = 0; - b->yy_input_file = 0; + b->yy_input_file = NULL; b->yy_n_chars = b->yy_buf_size; b->yy_is_interactive = 0; b->yy_at_bol = 1; b->yy_fill_buffer = 0; b->yy_buffer_status = YY_BUFFER_NEW; - yy_switch_to_buffer(b ); + yy_switch_to_buffer( b ); return b; } @@ -2432,28 +2435,29 @@ YY_BUFFER_STATE yy_scan_buffer (char * base, yy_size_t size ) * @note If you want to scan bytes that may contain NUL values, then use * yy_scan_bytes() instead. */ -YY_BUFFER_STATE yy_scan_string (yyconst char * yystr ) +YY_BUFFER_STATE yy_scan_string (const char * yystr ) { - return yy_scan_bytes(yystr,strlen(yystr) ); + return yy_scan_bytes( yystr, (int) strlen(yystr) ); } /** Setup the input buffer state to scan the given bytes. The next call to yylex() will * scan from a @e copy of @a bytes. - * @param bytes the byte buffer to scan - * @param len the number of bytes in the buffer pointed to by @a bytes. + * @param yybytes the byte buffer to scan + * @param _yybytes_len the number of bytes in the buffer pointed to by @a bytes. * * @return the newly allocated buffer state object. */ -YY_BUFFER_STATE yy_scan_bytes (yyconst char * yybytes, yy_size_t _yybytes_len ) +YY_BUFFER_STATE yy_scan_bytes (const char * yybytes, int _yybytes_len ) { YY_BUFFER_STATE b; char *buf; - yy_size_t n, i; + yy_size_t n; + int i; /* Get memory for full buffer, including space for trailing EOB's. */ - n = _yybytes_len + 2; - buf = (char *) yyalloc(n ); + n = (yy_size_t) (_yybytes_len + 2); + buf = (char *) yyalloc( n ); if ( ! buf ) YY_FATAL_ERROR( "out of dynamic memory in yy_scan_bytes()" ); @@ -2462,7 +2466,7 @@ YY_BUFFER_STATE yy_scan_bytes (yyconst char * yybytes, yy_size_t _yybytes_len buf[_yybytes_len] = buf[_yybytes_len+1] = YY_END_OF_BUFFER_CHAR; - b = yy_scan_buffer(buf,n ); + b = yy_scan_buffer( buf, n ); if ( ! b ) YY_FATAL_ERROR( "bad buffer in yy_scan_bytes()" ); @@ -2478,9 +2482,9 @@ YY_BUFFER_STATE yy_scan_bytes (yyconst char * yybytes, yy_size_t _yybytes_len #define YY_EXIT_FAILURE 2 #endif -static void yy_fatal_error (yyconst char* msg ) +static void yynoreturn yy_fatal_error (const char* msg ) { - (void) fprintf( stderr, "%s\n", msg ); + fprintf( stderr, "%s\n", msg ); exit( YY_EXIT_FAILURE ); } @@ -2508,7 +2512,7 @@ static void yy_fatal_error (yyconst char* msg ) */ int yyget_lineno (void) { - + return yylineno; } @@ -2531,7 +2535,7 @@ FILE *yyget_out (void) /** Get the length of the current token. * */ -yy_size_t yyget_leng (void) +int yyget_leng (void) { return yyleng; } @@ -2546,29 +2550,29 @@ char *yyget_text (void) } /** Set the current line number. - * @param line_number + * @param _line_number line number * */ -void yyset_lineno (int line_number ) +void yyset_lineno (int _line_number ) { - yylineno = line_number; + yylineno = _line_number; } /** Set the input stream. This does not discard the current * input buffer. - * @param in_str A readable stream. + * @param _in_str A readable stream. * * @see yy_switch_to_buffer */ -void yyset_in (FILE * in_str ) +void yyset_in (FILE * _in_str ) { - yyin = in_str ; + yyin = _in_str ; } -void yyset_out (FILE * out_str ) +void yyset_out (FILE * _out_str ) { - yyout = out_str ; + yyout = _out_str ; } int yyget_debug (void) @@ -2576,9 +2580,9 @@ int yyget_debug (void) return yy_flex_debug; } -void yyset_debug (int bdebug ) +void yyset_debug (int _bdebug ) { - yy_flex_debug = bdebug ; + yy_flex_debug = _bdebug ; } static int yy_init_globals (void) @@ -2587,10 +2591,10 @@ static int yy_init_globals (void) * This function is called from yylex_destroy(), so don't allocate here. */ - (yy_buffer_stack) = 0; + (yy_buffer_stack) = NULL; (yy_buffer_stack_top) = 0; (yy_buffer_stack_max) = 0; - (yy_c_buf_p) = (char *) 0; + (yy_c_buf_p) = NULL; (yy_init) = 0; (yy_start) = 0; @@ -2599,8 +2603,8 @@ static int yy_init_globals (void) yyin = stdin; yyout = stdout; #else - yyin = (FILE *) 0; - yyout = (FILE *) 0; + yyin = NULL; + yyout = NULL; #endif /* For future reference: Set errno on error, since we are called by @@ -2615,7 +2619,7 @@ int yylex_destroy (void) /* Pop the buffer stack, destroying each element. */ while(YY_CURRENT_BUFFER){ - yy_delete_buffer(YY_CURRENT_BUFFER ); + yy_delete_buffer( YY_CURRENT_BUFFER ); YY_CURRENT_BUFFER_LVALUE = NULL; yypop_buffer_state(); } @@ -2636,18 +2640,19 @@ int yylex_destroy (void) */ #ifndef yytext_ptr -static void yy_flex_strncpy (char* s1, yyconst char * s2, int n ) +static void yy_flex_strncpy (char* s1, const char * s2, int n ) { - register int i; + + int i; for ( i = 0; i < n; ++i ) s1[i] = s2[i]; } #endif #ifdef YY_NEED_STRLEN -static int yy_flex_strlen (yyconst char * s ) +static int yy_flex_strlen (const char * s ) { - register int n; + int n; for ( n = 0; s[n]; ++n ) ; @@ -2657,11 +2662,12 @@ static int yy_flex_strlen (yyconst char * s ) void *yyalloc (yy_size_t size ) { - return (void *) malloc( size ); + return malloc(size); } void *yyrealloc (void * ptr, yy_size_t size ) { + /* The cast to (char *) in the following accommodates both * implementations that use char* generic pointers, and those * that use void* generic pointers. It works with the latter @@ -2669,18 +2675,17 @@ void *yyrealloc (void * ptr, yy_size_t size ) * any pointer type to void*, and deal with argument conversions * as though doing an assignment. */ - return (void *) realloc( (char *) ptr, size ); + return realloc(ptr, size); } void yyfree (void * ptr ) { - free( (char *) ptr ); /* see yyrealloc() for (char *) cast */ + free( (char *) ptr ); /* see yyrealloc() for (char *) cast */ } #define YYTABLES_NAME "yytables" -#line 322 "cod/cod.l" - +#line 320 "cod.l" static char *create_string_from_yytext() { @@ -2691,7 +2696,7 @@ static char *create_string_from_yytext() static void check_strbuf() { - int cur_len = string_buf_ptr - string_buffer; + intptr_t cur_len = string_buf_ptr - string_buffer; if ((cur_len + 1) == buffer_len) { buffer_len += 20; string_buffer = realloc(string_buffer, buffer_len + 1); @@ -2791,19 +2796,14 @@ char **enum_constants; static YY_BUFFER_STATE bb = NULL; static void -reset_types_table(defined_types, enumerated_constants) -char **defined_types; -char **enumerated_constants; +reset_types_table(char **defined_types, char **enumerated_constants) { types = defined_types; enums = enumerated_constants; } static void -setup_for_string_parse(string, defined_types, enum_constants) -const char *string; -char **defined_types; -char **enum_constants; +setup_for_string_parse(const char *string, char **defined_types, char **enum_constants) { types = defined_types; enums = enum_constants; diff --git a/cod/standard.c b/cod/standard.c index 194dad6f09..2735741153 100644 --- a/cod/standard.c +++ b/cod/standard.c @@ -22,18 +22,17 @@ #include "structs.h" #undef NDEBUG #include "assert.h" -#ifndef LINUX_KERNEL_MODULE #include #ifdef HAVE_MALLOC_H #include #endif #include + +#ifndef _MSC_VER +#include #else -#include -#include -#include +#define strdup _strdup #endif -#include #ifndef LINUX_KERNEL_MODULE #ifdef HAVE_ATL_H #include "atl.h" @@ -122,11 +121,11 @@ attr_ivalue(attr_list l, char *name) return i; } -static long +static ssize_t attr_lvalue(attr_list l, char *name) { atom_t atom = attr_atom_from_string(name); - long lo = 0; + ssize_t lo = 0; if (atom == 0 ) return 0; get_long_attr(l, atom, &lo); @@ -183,21 +182,54 @@ static void close_ffs_file(FFSFile fname) close_FFSfile(fname); } -int -gettimeofday_wrapper(struct timeval * tp) -{ - int ret = gettimeofday(tp, NULL); - return ret; -} - - -#include typedef struct chr_time { double d1; double d2; double d3; } chr_time; +#ifdef _MSC_VER +#include +#include // portable: uint64_t MSVC: __int64 + +#ifndef _WINSOCKAPI_ +// MSVC defines this in winsock2.h!? +typedef struct timeval { + long tv_sec; + long tv_usec; +} timeval; +#endif + +int gettimeofday(struct timeval* tp, struct timezone* tzp) +{ + // Note: some broken versions only have 8 trailing zero's, the correct epoch has 9 trailing zero's + // This magic number is the number of 100 nanosecond intervals since January 1, 1601 (UTC) + // until 00:00:00 January 1, 1970 + static const uint64_t EPOCH = ((uint64_t)116444736000000000ULL); + + SYSTEMTIME system_time; + FILETIME file_time; + uint64_t time; + + GetSystemTime(&system_time); + SystemTimeToFileTime(&system_time, &file_time); + time = ((uint64_t)file_time.dwLowDateTime); + time += ((uint64_t)file_time.dwHighDateTime) << 32; + + tp->tv_sec = (long)((time - EPOCH) / 10000000L); + tp->tv_usec = (long)(system_time.wMilliseconds * 1000); + return 0; +} +#else +#include +#endif + +int +gettimeofday_wrapper(struct timeval* tp) +{ + int ret = gettimeofday(tp, NULL); + return ret; +} static void chr_get_time( chr_time *time) @@ -347,35 +379,35 @@ static cod_extern_entry internal_externs[] = static cod_extern_entry externs[] = { #ifdef HAVE_ATL_H - {"attr_set", (void*)(long)attr_set}, - {"create_attr_list", (void*)(long)attr_create_list}, - {"copy_attr_list", (void*)(long)attr_copy_list}, - {"free_attr_list", (void*)(long)attr_free_list}, - {"set_int_attr", (void*)(long)std_set_int_attr}, - {"set_long_attr", (void*)(long)std_set_long_attr}, - {"set_double_attr", (void*)(long)std_set_double_attr}, - {"set_float_attr", (void*)(long)std_set_float_attr}, - {"set_string_attr", (void*)(long)std_set_string_attr}, - {"attr_ivalue", (void*)(long)attr_ivalue}, - {"attr_lvalue", (void*)(long)attr_lvalue}, - {"attr_dvalue", (void*)(long)attr_dvalue}, - {"attr_fvalue", (void*)(long)attr_fvalue}, - {"attr_svalue", (void*)(long)attr_svalue}, + {"attr_set", (void*)(intptr_t)attr_set}, + {"create_attr_list", (void*)(intptr_t)attr_create_list}, + {"copy_attr_list", (void*)(intptr_t)attr_copy_list}, + {"free_attr_list", (void*)(intptr_t)attr_free_list}, + {"set_int_attr", (void*)(intptr_t)std_set_int_attr}, + {"set_long_attr", (void*)(intptr_t)std_set_long_attr}, + {"set_double_attr", (void*)(intptr_t)std_set_double_attr}, + {"set_float_attr", (void*)(intptr_t)std_set_float_attr}, + {"set_string_attr", (void*)(intptr_t)std_set_string_attr}, + {"attr_ivalue", (void*)(intptr_t)attr_ivalue}, + {"attr_lvalue", (void*)(intptr_t)attr_lvalue}, + {"attr_dvalue", (void*)(intptr_t)attr_dvalue}, + {"attr_fvalue", (void*)(intptr_t)attr_fvalue}, + {"attr_svalue", (void*)(intptr_t)attr_svalue}, #endif - {"chr_get_time", (void*)(long)chr_get_time}, - {"chr_timer_diff", (void*)(long)chr_timer_diff}, - {"chr_timer_eq_zero", (void*)(long)chr_timer_eq_zero}, - {"chr_timer_sum", (void*)(long)chr_timer_sum}, - {"chr_timer_start", (void*)(long)chr_timer_start}, - {"chr_timer_stop", (void*)(long)chr_timer_stop}, - {"chr_time_to_nanosecs", (void*)(long)chr_time_to_nanosecs}, - {"chr_time_to_microsecs", (void*)(long)chr_time_to_microsecs}, - {"chr_time_to_millisecs", (void*)(long)chr_time_to_millisecs}, - {"chr_time_to_secs", (void*)(long)chr_time_to_secs}, - {"chr_approx_resolution", (void*)(long)chr_approx_resolution}, - {"gettimeofday", (void*)(long)gettimeofday_wrapper}, - {"open_ffs", (void*)(long)open_ffs_file}, - {"close_ffs", (void*)(long)close_ffs_file}, + {"chr_get_time", (void*)(intptr_t)chr_get_time}, + {"chr_timer_diff", (void*)(intptr_t)chr_timer_diff}, + {"chr_timer_eq_zero", (void*)(intptr_t)chr_timer_eq_zero}, + {"chr_timer_sum", (void*)(intptr_t)chr_timer_sum}, + {"chr_timer_start", (void*)(intptr_t)chr_timer_start}, + {"chr_timer_stop", (void*)(intptr_t)chr_timer_stop}, + {"chr_time_to_nanosecs", (void*)(intptr_t)chr_time_to_nanosecs}, + {"chr_time_to_microsecs", (void*)(intptr_t)chr_time_to_microsecs}, + {"chr_time_to_millisecs", (void*)(intptr_t)chr_time_to_millisecs}, + {"chr_time_to_secs", (void*)(intptr_t)chr_time_to_secs}, + {"chr_approx_resolution", (void*)(intptr_t)chr_approx_resolution}, + {"gettimeofday", (void*)(intptr_t)gettimeofday_wrapper}, + {"open_ffs", (void*)(intptr_t)open_ffs_file}, + {"close_ffs", (void*)(intptr_t)close_ffs_file}, {(void*)0, (void*)0} }; @@ -433,35 +465,35 @@ cod_add_standard_elements(cod_parse_context context) #endif /* LINUX_KERNEL_MODULE */ #if NO_DYNAMIC_LINKING -#define sym(x) (void*)(long)x +#define sym(x) (void*)(intptr_t)x #else #define sym(x) (void*)0 #endif static cod_extern_entry string_externs[] = { - {"memchr", (void*)(long)memchr}, - {"memcmp", (void*)(long)memcmp}, - {"memcpy", (void*)(long)memcpy}, - {"memmove", (void*)(long)memmove}, - {"memset", (void*)(long)memset}, - {"strcat", (void*)(long)strcat}, - {"strchr", (void*)(long)strchr}, - {"strcmp", (void*)(long)strcmp}, - {"strcoll", (void*)(long)strcoll}, - {"strcpy", (void*)(long)strcpy}, - {"strcspn", (void*)(long)strcspn}, - {"strerror", (void*)(long)strerror}, - {"strlen", (void*)(long)strlen}, - {"strncat", (void*)(long)strncat}, - {"strncmp", (void*)(long)strncmp}, - {"strncpy", (void*)(long)strncpy}, - {"strpbrk", (void*)(long)strpbrk}, - {"strrchr", (void*)(long)strrchr}, - {"strspn", (void*)(long)strspn}, - {"strstr", (void*)(long)strstr}, - {"strtok", (void*)(long)strtok}, - {"strxfrm", (void*)(long)strxfrm}, + {"memchr", (void*)(intptr_t)memchr}, + {"memcmp", (void*)(intptr_t)memcmp}, + {"memcpy", (void*)(intptr_t)memcpy}, + {"memmove", (void*)(intptr_t)memmove}, + {"memset", (void*)(intptr_t)memset}, + {"strcat", (void*)(intptr_t)strcat}, + {"strchr", (void*)(intptr_t)strchr}, + {"strcmp", (void*)(intptr_t)strcmp}, + {"strcoll", (void*)(intptr_t)strcoll}, + {"strcpy", (void*)(intptr_t)strcpy}, + {"strcspn", (void*)(intptr_t)strcspn}, + {"strerror", (void*)(intptr_t)strerror}, + {"strlen", (void*)(intptr_t)strlen}, + {"strncat", (void*)(intptr_t)strncat}, + {"strncmp", (void*)(intptr_t)strncmp}, + {"strncpy", (void*)(intptr_t)strncpy}, + {"strpbrk", (void*)(intptr_t)strpbrk}, + {"strrchr", (void*)(intptr_t)strrchr}, + {"strspn", (void*)(intptr_t)strspn}, + {"strstr", (void*)(intptr_t)strstr}, + {"strtok", (void*)(intptr_t)strtok}, + {"strxfrm", (void*)(intptr_t)strxfrm}, {NULL, NULL} }; @@ -491,14 +523,16 @@ int strxfrm(char *s1, const char *s2, int size);\n\ static cod_extern_entry strings_externs[] = { - {"bcmp", (void*)(long)bcmp}, - {"bcopy", (void*)(long)bcopy}, - {"bzero", (void*)(long)bzero}, - {"index", (void*)(long)index}, - {"rindex", (void*)(long)rindex}, - {"ffs", (void*)(long)ffs}, - {"strcasecmp", (void*)(long)strcasecmp}, - {"strncasecmp", (void*)(long)strncasecmp}, +#ifndef _MSC_VER + {"bcmp", (void*)(intptr_t)bcmp}, + {"bcopy", (void*)(intptr_t)bcopy}, + {"bzero", (void*)(intptr_t)bzero}, + {"index", (void*)(intptr_t)index}, + {"rindex", (void*)(intptr_t)rindex}, + {"ffs", (void*)(intptr_t)ffs}, + {"strcasecmp", (void*)(intptr_t)strcasecmp}, + {"strncasecmp", (void*)(intptr_t)strncasecmp}, +#endif {NULL, NULL} }; @@ -651,7 +685,7 @@ static void dlload_externs(char *libname, cod_extern_entry *externs); extern void cod_process_include(char *name, cod_parse_context context) { - int char_count = index(name, '.') - name; + intptr_t char_count = strchr(name, '.') - name; if (char_count < 0) char_count = strlen(name); if (strncmp(name, "string", char_count) == 0) { cod_assoc_externs(context, string_externs); @@ -668,7 +702,10 @@ cod_process_include(char *name, cod_parse_context context) } } +#if !NO_DYNAMIC_LINKING #include +#endif + static void dlload_externs(char *libname, cod_extern_entry *externs) { diff --git a/cod/struct.pl b/cod/struct.pl index ec6ace2276..056fa056cb 100755 --- a/cod/struct.pl +++ b/cod/struct.pl @@ -284,7 +284,7 @@ sub gen_copy { sub gen_srcpos { my($houtfile, $coutfile) = @_; print $houtfile "extern srcpos cod_get_srcpos(sm_ref expr);\n"; - print $coutfile "extern srcpos cod_get_srcpos(expr)\nsm_ref expr;\n{\n"; + print $coutfile "extern srcpos cod_get_srcpos(sm_ref expr)\n{\n"; print $coutfile " switch(expr->node_type) {\n"; foreach my $name (@display_order) { foreach my $field ( @{$structs{$name}->{order}} ) { diff --git a/cod/tests/atl_test.c b/cod/tests/atl_test.c index bb570d7548..0b53d97cfe 100644 --- a/cod/tests/atl_test.c +++ b/cod/tests/atl_test.c @@ -7,6 +7,7 @@ #include #include +#include #ifndef HAVE_ATL_H int main() @@ -37,7 +38,7 @@ main(int argc, char **argv) static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; /* test external call */ @@ -65,7 +66,7 @@ main(int argc, char **argv) cod_subroutine_declaration("int proc(attr_list l)", context); gen_code = cod_code_gen(code, context); - func = (int (*)(attr_list))(long)gen_code->func; + func = (int (*)(attr_list))(intptr_t)gen_code->func; if ((func)(l) != 15) { printf("Function didn't return 15\n"); @@ -76,7 +77,7 @@ main(int argc, char **argv) cod_subroutine_declaration("int proc(attr_list l)", context2); gen_code = cod_code_gen(code, context2); - func = (int (*)(attr_list))(long)gen_code->func; + func = (int (*)(attr_list))(intptr_t)gen_code->func; if ((func)(l) != 15) { printf("Function didn't return 15\n"); @@ -91,7 +92,7 @@ main(int argc, char **argv) static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {"l", (void*) 0}, {(void*)0, (void*)0} }; @@ -121,7 +122,7 @@ main(int argc, char **argv) cod_subroutine_declaration("int proc()", context); gen_code = cod_code_gen(code, context); - func = (int (*)(attr_list))(long)gen_code->func; + func = (int (*)(attr_list))(intptr_t)gen_code->func; if ((func)(l) != 15) { printf("Function didn't return 15\n"); @@ -138,7 +139,7 @@ main(int argc, char **argv) static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; /* test external call */ @@ -160,7 +161,7 @@ main(int argc, char **argv) cod_subroutine_declaration("int proc(attr_list l[], int i)", context); gen_code = cod_code_gen(code, context); - func = (int (*)(attr_list*, int))(long)gen_code->func; + func = (int (*)(attr_list*, int))(intptr_t)gen_code->func; l[0] = create_attr_list(); set_attr(l[0], attr_atom_from_string("test_value"), Attr_Int4, (attr_value)15); @@ -185,7 +186,7 @@ main(int argc, char **argv) static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; /* test external call */ @@ -212,7 +213,7 @@ main(int argc, char **argv) cod_subroutine_declaration("double proc(int limit)", context); gen_code = cod_code_gen(code, context); - func = (double (*)(int))(long)gen_code->func; + func = (double (*)(int))(intptr_t)gen_code->func; big = (func)(1000000); little = (func)(10000); diff --git a/cod/tests/compound_assignment.c b/cod/tests/compound_assignment.c index 119ea760f0..eaf248fa08 100644 --- a/cod/tests/compound_assignment.c +++ b/cod/tests/compound_assignment.c @@ -2,6 +2,7 @@ #include "cod.h" #include #include +#include #include #define assert(EX) ((EX) ? (void)0 : (fprintf(stderr, "\"%s\" failed, file %s, line %d\n", #EX, __FILE__, __LINE__), exit(1))) @@ -19,6 +20,8 @@ cod_add_param("ec", "cod_exec_context", 0, x);\ if (output_file) cod_set_error_func(x, error_func); #define EC_param0 ec #define EC_param1 ec, +#define EC_param0_decl cod_exec_context +#define EC_param1_decl cod_exec_context, #endif static int verbose = 0; @@ -71,19 +74,19 @@ main(int argc, char **argv) static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; cod_code gen_code; long ret; - long (*func)(); + long (*func)(EC_param0_decl); GEN_PARSE_CONTEXT(context); cod_assoc_externs(context, externs); cod_parse_for_context(extern_string, context); gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; ret = func(EC_param0); assert(ret == 19); ret = func(EC_param0); @@ -114,19 +117,19 @@ main(int argc, char **argv) static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; cod_code gen_code; long ret; - long (*func)(); + long (*func)(EC_param0_decl); GEN_PARSE_CONTEXT(context); cod_assoc_externs(context, externs); cod_parse_for_context(extern_string, context); gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; ret = func(EC_param0); assert(ret == 524); ret = func(EC_param0); @@ -155,19 +158,19 @@ main(int argc, char **argv) static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; cod_code gen_code; long ret; - long (*func)(); + long (*func)(EC_param0_decl); GEN_PARSE_CONTEXT(context); cod_assoc_externs(context, externs); cod_parse_for_context(extern_string, context); gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; ret = func(EC_param0); assert(ret == 0x1159e24 + 0x1159e2); ret = func(EC_param0); @@ -202,19 +205,19 @@ printf(\"after q = %x, r = %x, s = %x\\n\", q, r, s);\n\ static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; cod_code gen_code; long ret; - long (*func)(); + long (*func)(EC_param0_decl); GEN_PARSE_CONTEXT(context); cod_assoc_externs(context, externs); cod_parse_for_context(extern_string, context); gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; ret = func(EC_param0); assert(ret == 0x8c + 0x6776 + 0x6802); ret = func(EC_param0); diff --git a/cod/tests/control.c b/cod/tests/control.c index 6a876c25be..5d0497c5f3 100644 --- a/cod/tests/control.c +++ b/cod/tests/control.c @@ -2,6 +2,7 @@ #include "data_funcs.h" #include "cod.h" #include +#include #include #include @@ -19,6 +20,8 @@ x = new_cod_parse_context();\ cod_add_param("ec", "cod_exec_context", 0, x); #define EC_param0 ec #define EC_param1 ec, +#define EC_param0_decl cod_exec_context +#define EC_param1_decl cod_exec_context, #endif extern void @@ -48,7 +51,7 @@ main(int argc, char**argv) static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; char code_string[] = "\ @@ -68,7 +71,7 @@ main(int argc, char**argv) cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); @@ -77,7 +80,7 @@ main(int argc, char**argv) gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == 17); @@ -91,7 +94,7 @@ main(int argc, char**argv) static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; char code_string[] = "\ @@ -109,7 +112,7 @@ top:\n\ cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); @@ -118,7 +121,7 @@ top:\n\ gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == 20); @@ -132,7 +135,7 @@ top:\n\ static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; char code_string[] = "\ @@ -147,7 +150,7 @@ top:\n\ cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); @@ -156,7 +159,7 @@ top:\n\ gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == 11); @@ -170,7 +173,7 @@ top:\n\ static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; char code_string[] = "\ @@ -191,7 +194,7 @@ top:\n\ cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); @@ -200,7 +203,7 @@ top:\n\ gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == 420); @@ -214,7 +217,7 @@ top:\n\ static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; char code_string[] = "\ @@ -235,7 +238,7 @@ top:\n\ cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); @@ -244,7 +247,7 @@ top:\n\ gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == 420); @@ -258,7 +261,7 @@ top:\n\ static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; char code_string[] = "\ @@ -279,7 +282,7 @@ top:\n\ cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); @@ -288,7 +291,7 @@ top:\n\ gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == 420); @@ -305,9 +308,9 @@ top:\n\ static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, - {"EVdiscard", (void*)(long)discard}, - {"EVcount", (void*)(long)count}, + {"printf", (void*)(intptr_t)printf}, + {"EVdiscard", (void*)(intptr_t)discard}, + {"EVcount", (void*)(intptr_t)count}, {(void*)0, (void*)0} }; char code_string[] = "\ @@ -321,7 +324,7 @@ top:\n\ cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); @@ -332,7 +335,7 @@ top:\n\ gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == 5 + 7 + 9); @@ -346,7 +349,7 @@ top:\n\ static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; char code_string[] = "\ @@ -361,7 +364,7 @@ top:\n\ cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); @@ -370,7 +373,7 @@ top:\n\ gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == 42); diff --git a/cod/tests/data_funcs.c b/cod/tests/data_funcs.c index 10114efb49..0774019e5d 100644 --- a/cod/tests/data_funcs.c +++ b/cod/tests/data_funcs.c @@ -1,10 +1,21 @@ #include "config.h" #include "fm.h" #include +#include #include #include #include +#ifdef HAVE_UNISTD_H #include +#endif +#include +#include + +#ifdef _MSC_VER +#define read(x,y,z) _read(x,y,z) +#define open(x,y,z) _open(x,y,z) +#include +#endif #define MAGIC 0x4356ffaa /* random magic */ #define assert(EX) ((EX) ? (void)0 : (fprintf(stderr, "\"%s\" failed, file %s, line %d\n", #EX, __FILE__, __LINE__), exit(1))) @@ -48,9 +59,7 @@ write_buffer(char *filename, FMStructDescList desc, void *data, } static void -byte_swap(data, size) -char *data; -int size; +byte_swap(char *data, int size) { int i; assert((size % 2) == 0); @@ -103,7 +112,7 @@ char *read_buffer(FMContext c, char *read_file, int test_num) static int data_test_num = -1; char *buf; if (f == 0) { - int in_magic; + int in_magic = 0; f = open(read_file, O_RDONLY, 0777); if(read(f, &in_magic, 4) != 4) exit(1); if (in_magic != MAGIC) { diff --git a/cod/tests/data_funcs.h b/cod/tests/data_funcs.h index 46a5f2bcf4..45c1500284 100644 --- a/cod/tests/data_funcs.h +++ b/cod/tests/data_funcs.h @@ -1,4 +1,7 @@ #include "fm.h" +#ifdef _MSC_VER +#define strdup(s) _strdup(s) +#endif extern void write_buffer(char *filename, FMStructDescList desc, void *data, int test_num); diff --git a/cod/tests/general.ops b/cod/tests/general.ops index f8cfdb4f92..a3a2d588f7 100644 --- a/cod/tests/general.ops +++ b/cod/tests/general.ops @@ -5,9 +5,10 @@ sub upperc { return $_; } -%c_types = ('c', 'signed char', 'uc', 'unsigned char', 's', 'short', 'us', 'unsigned short', 'i', 'int', 'u', 'unsigned int', 'l', 'long', 'ul', 'unsigned long', 'p', 'char*', 'f', 'float', 'd', 'double'); -%rand_types = ('c', 'l', 'uc', 'l', 's', 'l', 'us', 'l', 'i', 'l', 'u', 'l', 'l', 'l', 'ul', 'l', 'p', '(char *)l', 'f', 'd', 'd', 'd'); -%c_print_formats = ('c', '%d', 'uc', '%u', 's', '%d', 'us', '%u', 'i', '%d', 'u', '%u', 'l', '%ld', 'ul', '%lu', 'p', '%lx', 'f', '%g', 'd', '%g'); +%c_types = ('c', 'signed char', 'uc', 'unsigned char', 's', 'short', 'us', 'unsigned short', 'i', 'int', 'u', 'unsigned int', 'l', 'intptr_t', 'ul', 'uintptr_t', 'p', 'char*', 'f', 'float', 'd', 'double'); +%cod_types = ('c', 'signed char', 'uc', 'unsigned char', 's', 'short', 'us', 'unsigned short', 'i', 'int', 'u', 'unsigned int', 'l', 'long', 'ul', 'unsigned long', 'p', 'char*', 'f', 'float', 'd', 'double'); +%rand_types = ('c', 'l', 'uc', 'l', 's', 'l', 'us', 'l', 'i', 'l', 'u', 'l', 'l', 'l', 'ul', 'l', 'p', '(intptr_t)l', 'f', 'd', 'd', 'd'); +%c_print_formats = ('c', '%d', 'uc', '%u', 's', '%d', 'us', '%u', 'i', '%d', 'u', '%u', 'l', '%zd', 'ul', '%zu', 'p', '%lx', 'f', '%g', 'd', '%g'); %drisc_arg_formats = ('c', '%i', 'uc', '%u', 's', '%i', 'us', '%u', 'i', '%i', 'u', '%u', 'l', '%l', 'ul', '%ul', 'p', '%p', 'f', '%f', 'd', '%d'); %type_masks = ('c', "f", 'uc', "f", 's', "f ff fff", 'us', "f ff fff", 'i', "f ff fff ffff fffff ffffff fffffff", 'u', "f ff fff ffff fffff ffffff fffffff", 'l', "f ff fff ffff fffff ffffff fffffff", 'ul', "f ff fff ffff fffff ffffff fffffff"); @@ -77,7 +78,9 @@ sub arith_insn { foreach(split(' ', $type_list)) { $t2 = ${_}; $c_type1 = $c_types{$t1}; + $cod_type1 = $cod_types{$t1}; $c_type2 = $c_types{$t2}; + $cod_type2 = $cod_types{$t2}; $c_pformat1 = $c_print_formats{$t1}; $c_pformat2 = $c_print_formats{$t2}; $line = __LINE__ + 3; @@ -132,6 +135,9 @@ sub arith_insn { if (($t1 eq "uc") || ($t1 eq "us") || ($t1 eq "u") || ($t1 eq "ul")) { $result_if = "if ((expected_result == 0) || (expected_result == ($c_type1) 0x$type_max{$t1}) || (expected_result == ($c_type1) 0x$type_max2{$t1})) continue;\n $result_if"; } + if (($t1 eq "ul") && (($t2 eq "d") || ($t2 eq "f"))) { + $result_if = "if (source1_ul > ((ssize_t)11<<52)) continue;\n $result_if"; + } if (($t1 eq "uc") && ($c_op eq "/")) { $range_decl .= "\n unsigned int expect_int;"; $div_continue .= "\n expect_int = (unsigned int) $expected_value;"; @@ -142,8 +148,8 @@ print COUT<func; + proc = ($c_type1 (*)($c_type1, $c_type2))(intptr_t)gen_code->func; for (i=0 ; i < sizeof($vals1)/sizeof($vals1\[0\]) ; i++) { @@ -814,6 +820,7 @@ print COUT< #include "string.h" #include "math.h" @@ -823,6 +830,10 @@ print COUT< +typedef SSIZE_T ssize_t; +#endif #else extern double drand48(); extern long lrand48(); @@ -944,7 +955,7 @@ EOF print COUT " br_src${dr_type}_vals[5] = ($c_type) -((long)rand1_$dr_type) - 1;\n"; } print COUT " externs[0].extern_name = \"printf\";\n"; - print COUT " externs[0].extern_value = (void*)(long)printf;\n"; + print COUT " externs[0].extern_value = (void*)(intptr_t)printf;\n"; print COUT " externs[1].extern_name = (void*)0;\n"; print COUT " externs[1].extern_value = (void*)0;\n"; print COUT "}\n"; diff --git a/cod/tests/gray.c b/cod/tests/gray.c index 463df677f5..3e9ed3f5da 100644 --- a/cod/tests/gray.c +++ b/cod/tests/gray.c @@ -2,6 +2,7 @@ #include "cod.h" #include #include +#include #define assert(EX) ((EX) ? (void)0 : (fprintf(stderr, "\"%s\" failed, file %s, line %d\n", #EX, __FILE__, __LINE__), exit(1))) @@ -66,7 +67,7 @@ void doOneTest(void (*f)(), int step) */ func = (long (*)(unsigned char *, unsigned char *, unsigned long, unsigned long, - unsigned char *)) (long) f; + unsigned char *)) (intptr_t) f; /* pre-clear the output buffer */ for(p=output; p < output + sizeof(output); ) *p++ = 0x0; @@ -91,8 +92,8 @@ void doOneTest(void (*f)(), int step) } /* first, the easy size check */ - if (result != sizeof(gray)) { printf("result is %ld, not %ld\n", result, - (long)sizeof(gray));} + if (result != sizeof(gray)) { printf("result is %ld, not %zu\n", result, + sizeof(gray));} assert(result == sizeof(gray)); /* then compare the whole image w/ expected gray */ @@ -180,7 +181,7 @@ main(int argc, char **argv) static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; diff --git a/cod/tests/mix.c b/cod/tests/mix.c index 93837f5b25..82911462f4 100644 --- a/cod/tests/mix.c +++ b/cod/tests/mix.c @@ -1,6 +1,7 @@ #include "config.h" #include "cod.h" #include +#include #define IMGDEBUG diff --git a/cod/tests/strings.c b/cod/tests/strings.c index 6deed13038..1d2da8351b 100644 --- a/cod/tests/strings.c +++ b/cod/tests/strings.c @@ -2,6 +2,7 @@ #include "cod.h" #include #include +#include #include #ifdef HAVE_MALLOC_H #include @@ -30,10 +31,10 @@ char *strstr(char* s1, char *s2);\n\ void free(void *pointer);\n"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, - {"malloc", (void*)(long)malloc}, - {"strstr", (void*)(long)strstr}, - {"free", (void*)(long)free}, + {"printf", (void*)(intptr_t)printf}, + {"malloc", (void*)(intptr_t)malloc}, + {"strstr", (void*)(intptr_t)strstr}, + {"free", (void*)(intptr_t)free}, {(void*)0, (void*)0} }; cod_parse_context context = new_cod_parse_context(); @@ -48,7 +49,7 @@ void free(void *pointer);\n"; if (gen_code == NULL) { printf("Code generation failed for test 2\n"); } else { - func = (char*(*)(char*)) (long) gen_code->func; + func = (char*(*)(char*)) (intptr_t) gen_code->func; result = func("I'd really like a cream soda please!"); assert(strcmp("soda please!", result) == 0); cod_code_free(gen_code); diff --git a/cod/tests/structs.c b/cod/tests/structs.c index d9d9788ef6..7af5718d69 100644 --- a/cod/tests/structs.c +++ b/cod/tests/structs.c @@ -8,6 +8,7 @@ #include "data_funcs.h" #include "cod.h" #include +#include #include #include @@ -17,12 +18,16 @@ static int verbose = 0; x = new_cod_parse_context(); #define EC_param0 #define EC_param1 +#define EC_param0_decl +#define EC_param1_decl #else #define GEN_PARSE_CONTEXT(x) \ x = new_cod_parse_context();\ cod_add_param("ec", "cod_exec_context", 0, x); #define EC_param0 ec #define EC_param1 ec, +#define EC_param0_decl cod_exec_context +#define EC_param1_decl cod_exec_context, #endif #define assert(EX) ((EX) ? (void)0 : (fprintf(stderr, "\"%s\" failed, file %s, line %d\n", #EX, __FILE__, __LINE__), exit(1))) @@ -62,13 +67,13 @@ main(int argc, char**argv) cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == 4); @@ -93,13 +98,13 @@ main(int argc, char**argv) cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == 4); @@ -126,13 +131,13 @@ main(int argc, char**argv) cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == 4); diff --git a/cod/tests/t1.c b/cod/tests/t1.c index aa48bd7cfc..194d005822 100644 --- a/cod/tests/t1.c +++ b/cod/tests/t1.c @@ -8,6 +8,7 @@ #include "data_funcs.h" #include "cod.h" #include +#include #include #include @@ -17,12 +18,16 @@ static int verbose = 0; x = new_cod_parse_context(); #define EC_param0 #define EC_param1 +#define EC_param0_decl +#define EC_param1_decl #else #define GEN_PARSE_CONTEXT(x) \ x = new_cod_parse_context();\ cod_add_param("ec", "cod_exec_context", 0, x); #define EC_param0 ec #define EC_param1 ec, +#define EC_param0_decl cod_exec_context ec +#define EC_param1_decl cod_exec_context ec, #endif #define assert(EX) ((EX) ? (void)0 : (fprintf(stderr, "\"%s\" failed, file %s, line %d\n", #EX, __FILE__, __LINE__), exit(1))) @@ -82,13 +87,13 @@ main(int argc, char**argv) cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == 42); @@ -109,13 +114,13 @@ main(int argc, char**argv) cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == (!2)); @@ -138,7 +143,7 @@ main(int argc, char**argv) cod_parse_context context = new_cod_parse_context(); cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param1_decl int); #ifdef NO_EMULATION cod_subroutine_declaration("int proc(int i)", context); @@ -147,7 +152,7 @@ main(int argc, char**argv) #endif gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param1_decl int)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); assert(func(EC_param1 15) == 87); cod_exec_context_free(ec); @@ -165,20 +170,20 @@ main(int argc, char**argv) typedef struct test { int i; int j; - long k; + size_t k; short l; } test_struct, *test_struct_p; static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; FMField struct_fields[] = { {"i", "integer", sizeof(int), FMOffset(test_struct_p, i)}, {"j", "integer", sizeof(int), FMOffset(test_struct_p, j)}, - {"k", "integer", sizeof(long), FMOffset(test_struct_p, k)}, + {"k", "integer", sizeof(size_t), FMOffset(test_struct_p, k)}, {"l", "integer", sizeof(short), FMOffset(test_struct_p, l)}, {(void*)0, (void*)0, 0, 0}}; @@ -187,7 +192,7 @@ main(int argc, char**argv) test_struct str; test_struct *param = &str; cod_code gen_code; - long (*func)(); + long (*func)(EC_param1_decl test_struct_p); cod_assoc_externs(context, externs); cod_parse_for_context(extern_string, context); @@ -211,13 +216,14 @@ main(int argc, char**argv) } gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)(test_struct_p)) (long) gen_code->func; + func = (long(*)(EC_param1_decl test_struct_p)) gen_code->func; if (verbose) cod_dump(gen_code); str.i = 15; str.j = 4; str.k = 10; str.l = 3; + long tmp = func(EC_param1 param); assert(func(EC_param1 param) == 90); cod_exec_context_free(ec); cod_code_free(gen_code); @@ -232,7 +238,7 @@ main(int argc, char**argv) static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; static char code[] = "{\ @@ -259,7 +265,7 @@ main(int argc, char**argv) int i, j; double levels[253][37]; cod_code gen_code; - double (*func)(), result; + double (*func)(EC_param1_decl double*), result; double *param = &levels[0][0]; cod_assoc_externs(context, externs); @@ -293,7 +299,7 @@ main(int argc, char**argv) gen_code = cod_code_gen(code, context); ec = cod_create_exec_context(gen_code); - func = (double (*)())(long) gen_code->func; + func = (double (*)(EC_param1_decl double*))(intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param1 param); if (result != 18126.00) { @@ -315,8 +321,8 @@ main(int argc, char**argv) int *dummy(int*p);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, - {"dummy", (void*)(long)dummy}, + {"printf", (void*)(intptr_t)printf}, + {"dummy", (void*)(intptr_t)dummy}, {(void*)0, (void*)0} }; typedef struct test { @@ -340,7 +346,7 @@ int *dummy(int*p);"; int i, j = 0; double levels; cod_code gen_code; - int *(*func)(), *result; + int *(*func)(EC_param1_decl test_struct *), *result; test_struct strct; test_struct *param = &strct; @@ -373,7 +379,7 @@ int *dummy(int*p);"; gen_code = cod_code_gen(code, context); ec = cod_create_exec_context(gen_code); - func = (int * (*)())(long) gen_code->func; + func = (int * (*)(EC_param1_decl test_struct*)) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param1 param); if (result != (int*)&strct.levels) { diff --git a/cod/tests/t10.c b/cod/tests/t10.c index ec208fe6a4..b686013139 100644 --- a/cod/tests/t10.c +++ b/cod/tests/t10.c @@ -1,6 +1,7 @@ #include "config.h" #include "cod.h" #include +#include #include #ifdef HAVE_MALLOC_H #include @@ -26,9 +27,9 @@ void *malloc(int size);\n\ void free(void *pointer);\n"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, - {"malloc", (void*)(long)malloc}, - {"free", (void*)(long)free}, + {"printf", (void*)(intptr_t)printf}, + {"malloc", (void*)(intptr_t)malloc}, + {"free", (void*)(intptr_t)free}, {(void*)0, (void*)0} }; char code_string[] = "\ @@ -60,7 +61,7 @@ void free(void *pointer);\n"; cod_assoc_externs(context, externs); cod_parse_for_context(extern_string, context); gen_code = cod_code_gen(code_string, context); - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); assert(result == 42); cod_code_free(gen_code); @@ -110,9 +111,9 @@ void *malloc(int size);\n\ void free(void *pointer);\n"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, - {"malloc", (void*)(long)malloc}, - {"free", (void*)(long)free}, + {"printf", (void*)(intptr_t)printf}, + {"malloc", (void*)(intptr_t)malloc}, + {"free", (void*)(intptr_t)free}, {(void*)0, (void*)0} }; cod_parse_context context = new_cod_parse_context(); @@ -126,7 +127,7 @@ void free(void *pointer);\n"; if (gen_code == NULL) { printf("Code generation failed for test 2\n"); } else { - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); assert(result == 21); cod_code_free(gen_code); @@ -163,9 +164,9 @@ void *malloc(int size);\n\ void free(void *pointer);\n"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, - {"malloc", (void*)(long)malloc}, - {"free", (void*)(long)free}, + {"printf", (void*)(intptr_t)printf}, + {"malloc", (void*)(intptr_t)malloc}, + {"free", (void*)(intptr_t)free}, {(void*)0, (void*)0} }; cod_parse_context context = new_cod_parse_context(); @@ -179,7 +180,7 @@ void free(void *pointer);\n"; if (gen_code == NULL) { printf("Code generation failed for test 3\n"); } else { - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); assert(result == 20); cod_code_free(gen_code); @@ -215,9 +216,9 @@ void *malloc(int size);\n\ void free(void *pointer);\n"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, - {"malloc", (void*)(long)malloc}, - {"free", (void*)(long)free}, + {"printf", (void*)(intptr_t)printf}, + {"malloc", (void*)(intptr_t)malloc}, + {"free", (void*)(intptr_t)free}, {(void*)0, (void*)0} }; cod_parse_context context = new_cod_parse_context(); @@ -231,7 +232,7 @@ void free(void *pointer);\n"; if (gen_code == NULL) { printf("Code generation failed for test 3\n"); } else { - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); assert(result == 20); cod_code_free(gen_code); @@ -265,9 +266,9 @@ void free(void *pointer);\n"; static char extern_string[] = "int printf(string format, ...);\n"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, - {"malloc", (void*)(long)malloc}, - {"free", (void*)(long)free}, + {"printf", (void*)(intptr_t)printf}, + {"malloc", (void*)(intptr_t)malloc}, + {"free", (void*)(intptr_t)free}, {(void*)0, (void*)0} }; cod_parse_context context = new_cod_parse_context(); @@ -281,7 +282,7 @@ void free(void *pointer);\n"; if (gen_code == NULL) { printf("Code generation failed for test 3\n"); } else { - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); assert(result == 20); cod_code_free(gen_code); @@ -337,14 +338,14 @@ static FMField dyn_arrays_field_list[] = static char extern_string[] = "int printf(string format, ...);\n"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, - {"malloc", (void*)(long)malloc}, - {"free", (void*)(long)free}, + {"printf", (void*)(intptr_t)printf}, + {"malloc", (void*)(intptr_t)malloc}, + {"free", (void*)(intptr_t)free}, {(void*)0, (void*)0} }; cod_parse_context context = new_cod_parse_context(); cod_code gen_code; - long (*func)(); + long (*func)(dyn_arrays *); long result; cod_assoc_externs(context, externs); @@ -356,7 +357,7 @@ static FMField dyn_arrays_field_list[] = printf("Code generation failed for test 3\n"); } else { dyn_arrays input; - func = (long(*)()) (long) gen_code->func; + func = (long(*)(dyn_arrays*)) (intptr_t) gen_code->func; input.dim1 = 7; input.dim2 = 5; input.dim3 = 3; diff --git a/cod/tests/t11.c b/cod/tests/t11.c index 30f86b465a..1b16b31cb9 100644 --- a/cod/tests/t11.c +++ b/cod/tests/t11.c @@ -1,4 +1,5 @@ #include +#include #include #include #include diff --git a/cod/tests/t12.c b/cod/tests/t12.c index 5ab112405f..1c55395174 100644 --- a/cod/tests/t12.c +++ b/cod/tests/t12.c @@ -1,6 +1,7 @@ #include "config.h" #include "cod.h" #include +#include #include #include #ifdef HAVE_MALLOC_H @@ -48,12 +49,12 @@ main(int argc, char **argv) static char extern_string[] = "int printf(string format, ...);\n"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; cod_parse_context context = new_cod_parse_context(); cod_code gen_code; - long (*func)(); + long (*func)(cod_exec_context); long result; cod_assoc_externs(context, externs); @@ -68,7 +69,7 @@ main(int argc, char **argv) void *state; int state_size = 0; ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(cod_exec_context)) (intptr_t) gen_code->func; result = func(ec); if (verbose) printf("Run number after first run is %ld, expected 1\nGrabbing state...", result); assert(result == 1); @@ -132,12 +133,12 @@ main(int argc, char **argv) static char extern_string[] = "int printf(string format, ...);\n"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; cod_parse_context context = new_cod_parse_context(); cod_code gen_code; - long (*func)(); + long (*func)(cod_exec_context); long result; cod_assoc_externs(context, externs); @@ -152,7 +153,7 @@ main(int argc, char **argv) void *state; int state_size = 0; ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(cod_exec_context)) (intptr_t) gen_code->func; result = func(ec); assert(result == 0); diff --git a/cod/tests/t2.c b/cod/tests/t2.c index a17b56ce6b..437d983dd6 100644 --- a/cod/tests/t2.c +++ b/cod/tests/t2.c @@ -12,6 +12,7 @@ #endif #define assert(EX) ((EX) ? (void)0 : (fprintf(stderr, "\"%s\" failed, file %s, line %d\n", #EX, __FILE__, __LINE__), exit(1))) #include +#include #include int @@ -51,7 +52,7 @@ main(int argc, char **argv) static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; /* test external call */ @@ -70,7 +71,7 @@ main(int argc, char **argv) cod_subroutine_declaration("void proc(int i, double d, string s)", context); gen_code = cod_code_gen(code, context); - func = (void (*)(int, double, char*))(long)gen_code->func; + func = (void (*)(int, double, char*))(intptr_t)gen_code->func; printf("Expect -> \"values are is %d, %g, %s\"\n", 5, 3.14159, "hello!"); (func)(5, (double)3.14159, "hello!"); @@ -89,7 +90,7 @@ main(int argc, char **argv) static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; static char code[] = "{\ @@ -142,7 +143,7 @@ main(int argc, char **argv) write_buffer(write_file, &formats[0], &tmp, test_num); } gen_code = cod_code_gen(code, context); - func = (double (*)(test_struct_p))(long) gen_code->func; + func = (double (*)(test_struct_p))(intptr_t) gen_code->func; assert((func)(param) == 46.00); free(tmp.vals); cod_code_free(gen_code); @@ -160,7 +161,7 @@ main(int argc, char **argv) static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; static char code[] = "{\ @@ -214,7 +215,7 @@ main(int argc, char **argv) write_buffer(write_file, &formats[0], &tmp, test_num); } gen_code = cod_code_gen(code, context); - func = (int (*)(test_struct_p))(long) gen_code->func; + func = (int (*)(test_struct_p))(intptr_t) gen_code->func; assert((func)(param) == 145); free(tmp.vals); cod_code_free(gen_code); @@ -231,7 +232,7 @@ main(int argc, char **argv) static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; static char code[] = "{\ @@ -283,7 +284,7 @@ main(int argc, char **argv) write_buffer(write_file, &formats[0], &tmp, test_num); } gen_code = cod_code_gen(code, context); - func = (double (*)(test_struct_p))(long) gen_code->func; + func = (double (*)(test_struct_p))(intptr_t) gen_code->func; assert((func)(param) == 46.00); free(tmp.vals); cod_code_free(gen_code); @@ -301,7 +302,7 @@ main(int argc, char **argv) static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; static char code[] = "{\ @@ -355,7 +356,7 @@ main(int argc, char **argv) write_buffer(write_file, &formats[0], &tmp, test_num); } gen_code = cod_code_gen(code, context); - func = (double (*)(test_struct_p))(long) gen_code->func; + func = (double (*)(test_struct_p))(intptr_t) gen_code->func; assert((func)(param) == 46.00); free(tmp.vals); cod_code_free(gen_code); @@ -378,8 +379,8 @@ main(int argc, char **argv) static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, - {"malloc", (void*)(long)malloc}, + {"printf", (void*)(intptr_t)printf}, + {"malloc", (void*)(intptr_t)malloc}, {(void*)0, (void*)0} }; static char code[] = "{\ @@ -433,7 +434,7 @@ return testing;\n\ write_buffer(write_file, &formats[0], &tmp, test_num); } gen_code = cod_code_gen(code, context); - func = (double (*)(test_struct_p))(long) gen_code->func; + func = (double (*)(test_struct_p))(intptr_t) gen_code->func; assert((func)(param) == 46.00); (void)func; free(tmp.vals); diff --git a/cod/tests/t3.c b/cod/tests/t3.c index 802d50599d..fa0eed8536 100644 --- a/cod/tests/t3.c +++ b/cod/tests/t3.c @@ -10,6 +10,7 @@ #include #define assert(EX) ((EX) ? (void)0 : (fprintf(stderr, "\"%s\" failed, file %s, line %d\n", #EX, __FILE__, __LINE__), exit(1))) #include +#include static double testd(){return 1.0;} static int testi(){return 4;} @@ -20,6 +21,8 @@ x = new_cod_parse_context();\ if (output_file) cod_set_error_func(x, error_func); #define EC_param0 #define EC_param1 +#define EC_param0_decl +#define EC_param1_decl #else #define GEN_PARSE_CONTEXT(x) \ x = new_cod_parse_context();\ @@ -27,6 +30,8 @@ cod_add_param("ec", "cod_exec_context", 0, x);\ if (output_file) cod_set_error_func(x, error_func); #define EC_param0 ec #define EC_param1 ec, +#define EC_param0_decl cod_exec_context ec +#define EC_param1_decl cod_exec_context ec, #endif static int verbose = 0; @@ -88,12 +93,12 @@ main(int argc, char **argv) static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; cod_code gen_code; long ret; - long (*func)(); + long (*func)(EC_param0_decl); if (verbose) printf("Running test 1 (-o 1)\n"); GEN_PARSE_CONTEXT(context); @@ -101,7 +106,7 @@ main(int argc, char **argv) cod_parse_for_context(extern_string, context); gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; ret = func(EC_param0); assert(ret == 23); ret = func(EC_param0); @@ -128,7 +133,7 @@ main(int argc, char **argv) cod_parse_context context = new_cod_parse_context(); cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param1_decl int); if (verbose) printf("Running test 2 (-o 2)\n"); #ifdef NO_EMULATION @@ -138,7 +143,7 @@ main(int argc, char **argv) #endif gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)(int)) (long) gen_code->func; + func = (long(*)(EC_param1_decl int)) (intptr_t) gen_code->func; assert(func(EC_param1 15) == 87); cod_exec_context_free(ec); cod_code_free(gen_code); @@ -170,7 +175,7 @@ main(int argc, char **argv) cod_exec_context ec; test_struct str; cod_code gen_code; - long (*func)(); + long (*func)(EC_param1_decl test_struct_p); if (verbose) printf("Running test 3 (-o 3)\n"); cod_add_simple_struct_type("struct_type", struct_fields, context); @@ -182,7 +187,7 @@ main(int argc, char **argv) gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)(test_struct_p)) (long) gen_code->func; + func = (long(*)(EC_param1_decl test_struct_p)) (intptr_t) gen_code->func; str.i = 15; str.j = 4; @@ -198,7 +203,7 @@ main(int argc, char **argv) static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; char code_string[] = {"\ @@ -227,7 +232,7 @@ char code_string[] = {"\ cod_exec_context ec; test_struct str; cod_code gen_code; - long (*func)(); + long (*func)(EC_param1_decl test_struct_p); if (verbose) printf("Running test 4 (-o 4)\n"); cod_assoc_externs(context, externs); @@ -242,7 +247,7 @@ char code_string[] = {"\ gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)(test_struct_p)) (long) gen_code->func; + func = (long(*)(EC_param1_decl test_struct_p)) (intptr_t) gen_code->func; str.i = 15; str.j = 4; @@ -280,7 +285,7 @@ char code_string[] = {"\ int i, j; double levels[253][37], result; cod_code gen_code; - double (*func)(); + double (*func)(EC_param1_decl double*); if (verbose) printf("Running test 5 (-o 5)\n"); @@ -299,7 +304,7 @@ char code_string[] = {"\ gen_code = cod_code_gen(code, context); ec = cod_create_exec_context(gen_code); - func = (double (*)(double*))(long) gen_code->func; + func = (double (*)(EC_param1_decl double*))(intptr_t) gen_code->func; result = (func)(EC_param1 &levels[0][0]); if (result != 18126.00) { printf("Expected %g, got %g\n", 18126.0, result); @@ -313,8 +318,8 @@ char code_string[] = {"\ double testd();"; static cod_extern_entry externs[] = { - {"testd", (void*)(long)testd}, - {"printf", (void*)(long)printf}, + {"testd", (void*)(intptr_t)testd}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; static char code[] = "{\ @@ -326,7 +331,7 @@ char code_string[] = {"\ cod_exec_context ec; double result; cod_code gen_code; - double (*func)(); + double (*func)(EC_param0_decl); if (verbose) printf("Running test 6 (-o 6)\n"); cod_assoc_externs(context, externs); @@ -339,7 +344,7 @@ char code_string[] = {"\ #endif gen_code = cod_code_gen(code, context); ec = cod_create_exec_context(gen_code); - func = (double (*)())(long) gen_code->func; + func = (double (*)(EC_param0_decl))(intptr_t) gen_code->func; result = (func)(EC_param0); if (result != 1.0) { printf("Expected %g, got %g\n", 1.0, result); @@ -372,11 +377,11 @@ char code_string[] = {"\ static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); if (verbose) printf("Running test 7 (-o 7)\n"); GEN_PARSE_CONTEXT(context); @@ -384,7 +389,7 @@ char code_string[] = {"\ cod_parse_for_context(extern_string, context); gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; assert(func(EC_param0) == 23); assert(func(EC_param0) == 29); assert(func(EC_param0) == 35); @@ -398,8 +403,8 @@ char code_string[] = {"\ int testi();"; static cod_extern_entry externs[] = { - {"testi", (void*)(long)testi}, - {"printf", (void*)(long)printf}, + {"testi", (void*)(intptr_t)testi}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; static char code[] = "{\ @@ -411,7 +416,7 @@ char code_string[] = {"\ cod_exec_context ec; int result; cod_code gen_code; - int (*func)(); + int (*func)(EC_param0_decl); if (verbose) printf("Running test 8 (-o 8)\n"); cod_assoc_externs(context, externs); @@ -424,7 +429,7 @@ char code_string[] = {"\ #endif gen_code = cod_code_gen(code, context); ec = cod_create_exec_context(gen_code); - func = (int (*)())(long) gen_code->func; + func = (int (*)(EC_param0_decl))(intptr_t) gen_code->func; result = (func)(EC_param0); if (result != 0) { printf("Expected %d, got %d\n", 0, result); diff --git a/cod/tests/t4.c b/cod/tests/t4.c index af799f9cb2..dbe5a7f01d 100644 --- a/cod/tests/t4.c +++ b/cod/tests/t4.c @@ -5,6 +5,7 @@ #include "config.h" #include #include +#include #define assert(EX) ((EX) ? (void)0 : (fprintf(stderr, "\"%s\" failed, file %s, line %d\n", #EX, __FILE__, __LINE__), exit(1))) #include #include "cod.h" @@ -348,7 +349,7 @@ comment\n\ static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; int ret; @@ -389,7 +390,7 @@ comment\n\ static cod_extern_entry externs[] = { - {"junk", (void*)(long)printf}, + {"junk", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; int ret; diff --git a/cod/tests/t5.c b/cod/tests/t5.c index 262cf1ad58..de9b927536 100644 --- a/cod/tests/t5.c +++ b/cod/tests/t5.c @@ -10,6 +10,7 @@ #endif #define assert(EX) ((EX) ? (void)0 : (fprintf(stderr, "\"%s\" failed, file %s, line %d\n", #EX, __FILE__, __LINE__), exit(1))) #include +#include #include struct order_header { @@ -190,7 +191,7 @@ main(int argc, char **argv) static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; /* test external call */ @@ -306,7 +307,7 @@ main(int argc, char **argv) } gen_code = cod_code_gen(code, context); - func = (void (*)(void*,void*))(long)gen_code->func; + func = (void (*)(void*,void*))(intptr_t)gen_code->func; memset(&out_order, 0, sizeof(out_order)); (func)((void*)param, (void*)&out_order); if (out_order.station_id != order.station_id) { diff --git a/cod/tests/t6.c b/cod/tests/t6.c index e70032f3c6..2c0c01a842 100644 --- a/cod/tests/t6.c +++ b/cod/tests/t6.c @@ -8,6 +8,7 @@ #endif #define assert(EX) ((EX) ? (void)0 : (fprintf(stderr, "\"%s\" failed, file %s, line %d\n", #EX, __FILE__, __LINE__), exit(1))) #include +#include #include typedef struct @@ -58,7 +59,7 @@ main() static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; static char code[] = "{\n\ @@ -83,7 +84,7 @@ main() cod_subroutine_declaration("int proc(FrameData *output)", context); gen_code = cod_code_gen(code, context); - func = (void (*)(void*))(long)gen_code->func; + func = (void (*)(void*))(intptr_t)gen_code->func; data.num_points = 0; data.image_data = NULL; diff --git a/cod/tests/t7.c b/cod/tests/t7.c index 63f03aee61..c97423b1b1 100644 --- a/cod/tests/t7.c +++ b/cod/tests/t7.c @@ -15,6 +15,7 @@ #endif #define assert(EX) ((EX) ? (void)0 : (fprintf(stderr, "\"%s\" failed, file %s, line %d\n", #EX, __FILE__, __LINE__), exit(1))) #include +#include #include static int verbose = 0; @@ -23,12 +24,16 @@ static int verbose = 0; x = new_cod_parse_context(); #define EC_param0 #define EC_param1 +#define EC_param0_decl +#define EC_param1_decl #else #define GEN_PARSE_CONTEXT(x) \ x = new_cod_parse_context();\ cod_add_param("ec", "cod_exec_context", 0, x); #define EC_param0 ec #define EC_param1 ec, +#define EC_param0_decl cod_exec_context +#define EC_param1_decl cod_exec_context, #endif typedef struct _multi_array_rec { @@ -142,8 +147,8 @@ main(int argc, char **argv) int submit(cod_exec_context ec, int port, void *d, cod_type_spec dt);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, - {"submit", (void*)(long)submit}, + {"printf", (void*)(intptr_t)printf}, + {"submit", (void*)(intptr_t)submit}, {(void*)0, (void*)0} }; static char code[] = "{\n\ @@ -206,11 +211,11 @@ main(int argc, char **argv) cod_subroutine_declaration("void proc(cod_exec_context ec, simple *input)", context); gen_code = cod_code_gen(code, context); - func = (void (*)(cod_exec_context, void*))(long)gen_code->func; + func = (void (*)(cod_exec_context, void*))(intptr_t)gen_code->func; cod_dump(gen_code); ec = cod_create_exec_context(gen_code); - printf("Main ec is %lx\n", (long) ec); + printf("Main ec is %p\n", ec); func(ec, &multi_array); cod_exec_context_free(ec); cod_code_free(gen_code); @@ -234,13 +239,13 @@ main(int argc, char **argv) cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == 8); diff --git a/cod/tests/t8.c b/cod/tests/t8.c index fb64474339..532a29a39b 100644 --- a/cod/tests/t8.c +++ b/cod/tests/t8.c @@ -7,6 +7,7 @@ #include #include #include +#include static int verbose = 0; @@ -46,7 +47,7 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); assert(result == 7); cod_code_free(gen_code); @@ -54,7 +55,7 @@ main(int argc, char** argv) } test_num++; if ((run_only == -1) || (run_only == test_num)) { /* 1 */ - /* test cast of complex type (&j) to basic type (long) */ + /* test cast of complex type (&j) to basic type (intptr_t) */ char code_string[] = "\ {\n\ int j = 2;\n\ @@ -75,7 +76,7 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); if (result != 7) { printf("Expected 7, got %ld in t8, subtest 2\n", result); @@ -127,7 +128,7 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); assert(result==8); cod_code_free(gen_code); @@ -157,7 +158,7 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); assert(result == sizeof(int)); cod_code_free(gen_code); @@ -187,9 +188,9 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); - assert(result == -sizeof(int)); + assert(result == -(long) sizeof(int)); cod_code_free(gen_code); cod_free_parse_context(context); } @@ -216,7 +217,7 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); assert(result == sizeof(double *)); cod_code_free(gen_code); @@ -247,7 +248,7 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); assert(result == 2*sizeof(double)); cod_code_free(gen_code); @@ -277,7 +278,7 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); assert(result == 2*sizeof(double *)); cod_code_free(gen_code); @@ -308,7 +309,7 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); assert(result == 2); cod_code_free(gen_code); @@ -340,7 +341,7 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); assert(result == -2); cod_code_free(gen_code); @@ -372,7 +373,7 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); if (result != 16/sizeof(void*)) { printf(" op minus result is %ld\n", result); @@ -407,9 +408,9 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); - if (result != -(16/sizeof(void*))) { + if (result != -(16/(long)sizeof(void*))) { printf(" 2nd op minus result is %ld\n", result); exit(1); } @@ -442,7 +443,7 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); assert(result == -2*(long)sizeof(double)); cod_code_free(gen_code); @@ -473,7 +474,7 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (long(*)()) (long) gen_code->func; + func = (long(*)()) (intptr_t) gen_code->func; result = func(); assert(result == -2*(long)sizeof(double *)); cod_code_free(gen_code); @@ -495,8 +496,8 @@ main(int argc, char** argv) cod_parse_context context = new_cod_parse_context(); cod_code gen_code; unsigned char *p = (unsigned char *) "hiya"; - long (*func)(unsigned char *); - long result; + intptr_t (*func)(unsigned char *); + intptr_t result; cod_subroutine_declaration("long test(unsigned char * param)", context); gen_code = cod_code_gen(code_string, context); @@ -504,9 +505,9 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (long(*)(unsigned char *)) (long) gen_code->func; + func = (intptr_t(*)(unsigned char *)) (intptr_t) gen_code->func; result = func(p); - assert(result == (long) p); + assert(result == (intptr_t) p); cod_code_free(gen_code); cod_free_parse_context(context); } @@ -532,7 +533,7 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (int(*)(int *)) (long) gen_code->func; + func = (int(*)(int *)) (intptr_t) gen_code->func; result = func(&i); if (result != 8) printf("result was %d, not 8\n", result); if (i != 9) printf("i was %d, not 9\n", i); @@ -562,7 +563,7 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (int(*)(int *)) (long) gen_code->func; + func = (int(*)(int *)) (intptr_t) gen_code->func; result = func(&i); if (result != 9) printf("result was %d, not 8\n", result); if (i != 9) printf("i was %d, not 9\n", i); @@ -590,7 +591,7 @@ main(int argc, char** argv) printf("Code generation failed!\n"); return -1; } - func = (int*(*)(int *)) (long) gen_code->func; + func = (int*(*)(int *)) (intptr_t) gen_code->func; result = func(&i); if (result != (&i + 1)) printf("result was %p, not %p\n", result, &i + 1); diff --git a/cod/tests/t9.c b/cod/tests/t9.c index 24f0ef888b..b876f90073 100644 --- a/cod/tests/t9.c +++ b/cod/tests/t9.c @@ -2,6 +2,7 @@ #include "cod.h" #define assert(EX) ((EX) ? (void)0 : (fprintf(stderr, "\"%s\" failed, file %s, line %d\n", #EX, __FILE__, __LINE__), exit(1))) #include +#include char code_string[] = "{return sizeof(int);}"; char code_string2[] = "{return sizeof(int*);}"; char code_string3[] = "{ int j; return sizeof j;}"; @@ -19,12 +20,12 @@ main() cod_exec_context ec; cod_code gen_code; - int (*func)(); + int (*func)(cod_exec_context); cod_add_param("ec", "cod_exec_context", 0, context); gen_code = cod_code_gen(code_blocks[test], context); ec = cod_create_exec_context(gen_code); - func = (int(*)())gen_code->func; + func = (int(*)(cod_exec_context))gen_code->func; ret = (func)(ec); if (ret != results[test]) { printf("bad test %d, ret was %d\n", test, ret); diff --git a/cod/tests/time.c b/cod/tests/time.c index 0d541004c1..851166b1e8 100644 --- a/cod/tests/time.c +++ b/cod/tests/time.c @@ -9,6 +9,7 @@ #include "cod.h" #define assert(EX) ((EX) ? (void)0 : (fprintf(stderr, "\"%s\" failed, file %s, line %d\n", #EX, __FILE__, __LINE__), exit(1))) #include +#include #include #include @@ -18,12 +19,16 @@ static int verbose = 0; x = new_cod_parse_context(); #define EC_param0 #define EC_param1 +#define EC_param0_decl +#define EC_param1_decl #else #define GEN_PARSE_CONTEXT(x) \ x = new_cod_parse_context();\ cod_add_param("ec", "cod_exec_context", 0, x); #define EC_param0 ec #define EC_param1 ec, +#define EC_param0_decl cod_exec_context +#define EC_param1_decl cod_exec_context, #endif extern void @@ -72,29 +77,36 @@ main(int argc, char**argv) static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; char code_string[] = "\n\ {\n\ timeval t1, t2;\n \ - int delay = 10000;\n\ + int delay = 5000;\n\ long accum = 0;\n\ long usec_duration;\n\ + long sec_diff = 0;\n\ + long usec_diff = 0;\n\ gettimeofday(&t1);\n\ \n\ if (t1.tv_sec < 1423159919) { /* in the past */ \n\ return 0;\n\ }\n\ while(delay > 0) { /* just so there's a duration */\n \ + printf(\"slow loop %g\\n\", (double)delay * (double) accum);\n\ delay--;\n\ accum++;\n\ }\n\ gettimeofday(&t2);\n\ - usec_duration = (t2.tv_sec - t1.tv_sec) * 1000000 + t2.tv_usec - t1.tv_usec;\n\ + sec_diff = t2.tv_sec - t1.tv_sec;\n\ + usec_diff = t2.tv_usec - t1.tv_usec;\n\ + printf(\"sec diff = %ld\\n\", sec_diff);\n\ + printf(\"usec diff = %ld\\n\", usec_diff);\n\ + usec_duration = sec_diff * 1000000 + usec_diff;\n\ \n\ - if ((usec_duration < 1) || (usec_duration > 1000000)) {\n\ + if ((usec_duration < 1) || (usec_duration > 10000000)) {\n\ printf(\"duration is %d usecs, unreasonable\\n\", usec_duration);\n \ return 0; /* seems unreasonable */\n\ }\n\ @@ -104,7 +116,7 @@ main(int argc, char**argv) cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); @@ -112,7 +124,7 @@ main(int argc, char**argv) cod_parse_for_context(extern_string, context); gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == 1); @@ -133,13 +145,13 @@ main(int argc, char**argv) cod_parse_context context; cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param0_decl); long result; GEN_PARSE_CONTEXT(context); gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param0_decl)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param0); assert(result == (!2)); @@ -162,7 +174,7 @@ main(int argc, char**argv) cod_parse_context context = new_cod_parse_context(); cod_exec_context ec; cod_code gen_code; - long (*func)(); + long (*func)(EC_param1_decl int); #ifdef NO_EMULATION cod_subroutine_declaration("int proc(int i)", context); @@ -171,7 +183,7 @@ main(int argc, char**argv) #endif gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)()) (long) gen_code->func; + func = (long(*)(EC_param1_decl int)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); assert(func(EC_param1 15) == 87); cod_exec_context_free(ec); @@ -196,7 +208,7 @@ main(int argc, char**argv) static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; FMField struct_fields[] = { @@ -211,7 +223,7 @@ main(int argc, char**argv) test_struct str; test_struct *param = &str; cod_code gen_code; - long (*func)(); + long (*func)(EC_param1_decl test_struct_p); cod_assoc_externs(context, externs); cod_parse_for_context(extern_string, context); @@ -235,7 +247,7 @@ main(int argc, char**argv) } gen_code = cod_code_gen(code_string, context); ec = cod_create_exec_context(gen_code); - func = (long(*)(test_struct_p)) (long) gen_code->func; + func = (long(*)(EC_param1_decl test_struct_p)) (intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); str.i = 15; @@ -256,7 +268,7 @@ main(int argc, char**argv) static char extern_string[] = "int printf(string format, ...);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, + {"printf", (void*)(intptr_t)printf}, {(void*)0, (void*)0} }; static char code[] = "{\ @@ -283,7 +295,7 @@ main(int argc, char**argv) int i, j; double levels[253][37]; cod_code gen_code; - double (*func)(), result; + double (*func)(EC_param1_decl double*), result; double *param = &levels[0][0]; cod_assoc_externs(context, externs); @@ -317,7 +329,7 @@ main(int argc, char**argv) gen_code = cod_code_gen(code, context); ec = cod_create_exec_context(gen_code); - func = (double (*)())(long) gen_code->func; + func = (double (*)(EC_param1_decl double*))(intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param1 param); if (result != 18126.00) { @@ -339,8 +351,8 @@ main(int argc, char**argv) int *dummy(int*p);"; static cod_extern_entry externs[] = { - {"printf", (void*)(long)printf}, - {"dummy", (void*)(long)dummy}, + {"printf", (void*)(intptr_t)printf}, + {"dummy", (void*)(intptr_t)dummy}, {(void*)0, (void*)0} }; typedef struct test { @@ -364,7 +376,7 @@ int *dummy(int*p);"; int i, j = 1; double levels; cod_code gen_code; - int *(*func)(), *result; + int *(*func)(EC_param1_decl test_struct*), *result; test_struct strct; test_struct *param = &strct; @@ -397,7 +409,7 @@ int *dummy(int*p);"; gen_code = cod_code_gen(code, context); ec = cod_create_exec_context(gen_code); - func = (int * (*)())(long) gen_code->func; + func = (int * (*)(EC_param1_decl test_struct*))(intptr_t) gen_code->func; if (verbose) cod_dump(gen_code); result = func(EC_param1 param); if (result != (int*)&strct.levels) { diff --git a/cod/tests/xform.c b/cod/tests/xform.c index c9a0ca603d..2a4ee877e3 100644 --- a/cod/tests/xform.c +++ b/cod/tests/xform.c @@ -2,6 +2,7 @@ #include "ecl.h" #define assert(EX) ((EX) ? (void)0 : (fprintf(stderr, "\"%s\" failed, file %s, line %d\n", #EX, __FILE__, __LINE__), exit(1))) #include +#include #define IMGDEBUG diff --git a/config.h.cmake b/config.h.cmake index 1c0181a1a8..d02baec245 100755 --- a/config.h.cmake +++ b/config.h.cmake @@ -126,6 +126,9 @@ /* The number of bytes in type long long */ #define SIZEOF_LONG_LONG @SIZEOF_LONG_LONG@ +/* The number of bytes in type size_t */ +#define SIZEOF_SIZE_T @SIZEOF_SIZE_T@ + /* Define to `int' if does not define. */ #cmakedefine pid_t diff --git a/ffs/evol.c b/ffs/evol.c index 2c3a4d28bc..cd5bed3d87 100755 --- a/ffs/evol.c +++ b/ffs/evol.c @@ -82,9 +82,7 @@ FFS_determine_conversion(FFSContext c, FFSTypeHandle format) } static int -IO_field_type_eq(str1, str2) -const char *str1; -const char *str2; +IO_field_type_eq(const char *str1, const char *str2) { FMdata_type t1, t2; long t1_count, t2_count; @@ -101,8 +99,8 @@ const char *str2; char *colon2 = strchr(tmp_str2, ':'); char *lparen1 = strchr(str1, '['); char *lparen2 = strchr(str2, '['); - int count1 = 0; - int count2 = 0; + intptr_t count1 = 0; + intptr_t count2 = 0; if (colon1 != NULL) { count1 = colon1 - tmp_str1; @@ -133,13 +131,7 @@ const char *str2; * Returns FFSformat_order * */ static FMformat_order -FMformat_cmp_diff(format1, format2, diff1, diff2) -FMFormat format1; -FMFormat format2; -int *diff1; /* Number of fields present in format1 and - * not in format2 */ -int *diff2; /* Number of fields present in format2 and - * not in format1 */ +FMformat_cmp_diff(FMFormat format1, FMFormat format2, int *diff1, int *diff2) { FMformat_order tmp_result = Format_Equal; FMFieldList orig_field_list1 = format1->field_list; @@ -439,13 +431,10 @@ FMformat_compat_cmp2(FMFormat format, FMFormat *formatList, } extern void * -FFScreate_compat_info(prior_format, xform_code, len_p) -FMFormat prior_format; -char *xform_code; -int *len_p; +FFScreate_compat_info(FMFormat prior_format, char *xform_code, size_t *len_p) { char *block; - int block_len = strlen(xform_code) + prior_format->server_ID.length +1; + size_t block_len = strlen(xform_code) + prior_format->server_ID.length +1; block = malloc(block_len); memcpy(block, prior_format->server_ID.value, diff --git a/ffs/ffs.c b/ffs/ffs.c index a2f5ffe1f8..2bc61274c8 100755 --- a/ffs/ffs.c +++ b/ffs/ffs.c @@ -4,19 +4,19 @@ #include "assert.h" #include "ffs.h" #include "cod.h" -#include "fm_internal.h" -#include "ffs_internal.h" #include "string.h" #include "stdio.h" #include "stdlib.h" +#include "fm_internal.h" +#include "ffs_internal.h" #include "ffs_marshal.h" static void * quick_get_pointer(FMFieldPtr iofield, void *data); -static unsigned long +static size_t quick_get_ulong(FMFieldPtr iofield, void *data); void -quick_put_ulong(FMFieldPtr iofield, unsigned long value, void *data); +quick_put_ulong(FMFieldPtr iofield, size_t value, void *data); static ssize_t add_to_tmp_buffer(FFSBuffer buf, size_t size); static int64_t @@ -41,8 +41,8 @@ typedef struct encode_state { int addr_list_is_stack; int addr_list_cnt; addr_list_entry *addr_list; - int malloc_addr_size; - int saved_offset_difference; + ssize_t malloc_addr_size; + ssize_t saved_offset_difference; void *orig_data; }*estate; @@ -227,7 +227,7 @@ FFSencode_internal(FFSBuffer b, FMFormat fmformat, void *data, size_t *buf_size, struct encode_state state; init_encode_state(&state); size_t base_offset = 0; - int header_size; + size_t header_size; state.iovec_is_stack = 1; state.iovec = stack_iov_array; @@ -336,7 +336,7 @@ fixup_output_vector(FFSBuffer b, estate s) } static void -add_to_addr_list(estate s, void *addr, int offset) +add_to_addr_list(estate s, void *addr, size_t offset) { if (s->addr_list_is_stack) { if (s->addr_list_cnt == STACK_ARRAY_SIZE) { @@ -361,11 +361,11 @@ add_to_addr_list(estate s, void *addr, int offset) s->addr_list_cnt++; } -static int +static ssize_t search_addr_list(estate s, void *addr) { int i; - size_t previous_offset = (size_t) -1; + ssize_t previous_offset = (ssize_t) -1; for (i=0; i < s->addr_list_cnt; i++) { if (s->addr_list[i].addr == addr) { previous_offset = s->addr_list[i].offset; @@ -390,8 +390,8 @@ FFSencode_vector(FFSBuffer b, FMFormat fmformat, void *data) addr_list_entry stack_addr_list[STACK_ARRAY_SIZE]; struct encode_state state; init_encode_state(&state); - int base_offset = 0; - int header_size; + ssize_t base_offset = 0; + ssize_t header_size; state.iovec_is_stack = 1; state.iovec = stack_iov_array; @@ -473,7 +473,7 @@ handle_subfields(FFSBuffer buf, FMFormat f, estate s, size_t data_offset) if (!f->variant) return 1; for (i = 0; i < f->field_count; i++) { - int subfield_offset = data_offset + f->field_list[i].field_offset; + size_t subfield_offset = data_offset + f->field_list[i].field_offset; int ret; if (field_is_flat(f, &f->var_list[i].type_desc)) continue; ret = handle_subfield(buf, f, s, subfield_offset, data_offset, @@ -484,7 +484,7 @@ handle_subfields(FFSBuffer buf, FMFormat f, estate s, size_t data_offset) } static void -set_dynamic_array_size(FMFormat f, FFSBuffer buf, int parent_offset, FMTypeDesc *t, int new_value) +set_dynamic_array_size(FMFormat f, FFSBuffer buf, size_t parent_offset, FMTypeDesc *t, int new_value) { struct _FMgetFieldStruct src_spec; int field = t->control_field_index; @@ -501,7 +501,7 @@ set_dynamic_array_size(FMFormat f, FFSBuffer buf, int parent_offset, FMTypeDesc static size_t -determine_size(FMFormat f, FFSBuffer buf, int parent_offset, FMTypeDesc *t) +determine_size(FMFormat f, FFSBuffer buf, size_t parent_offset, FMTypeDesc *t) { switch (t->type) { case FMType_pointer: @@ -565,8 +565,8 @@ handle_subfield(FFSBuffer buf, FMFormat f, estate s, size_t data_offset, size_t } if (f->recursive) { - size_t previous_offset = search_addr_list(s, ptr_value); - if (previous_offset != (size_t)-1) { + ssize_t previous_offset = search_addr_list(s, ptr_value); + if (previous_offset != (ssize_t)-1) { quick_put_ulong(&src_spec, previous_offset, (char*)buf->tmp_buffer + data_offset); return 1; @@ -602,15 +602,15 @@ handle_subfield(FFSBuffer buf, FMFormat f, estate s, size_t data_offset, size_t cod_exec_context ec = marshal_info->ec; struct subsample_marshal_data smd; new_offset = allocate_tmp_space(s, buf, size, 8, &tmp_data_loc); - smd.element_count = element_count; + smd.element_count = (int)element_count; smd.element_size = element_size; smd.src_ptr = ptr_value; smd.dst_ptr = (char*)buf->tmp_buffer + new_offset; smd.marshalled_count = 0; #ifdef DO_DCG - cod_assoc_client_data(ec, 0x534d4450, (long)&smd); + cod_assoc_client_data(ec, 0x534d4450, (intptr_t)&smd); #endif - marshal_info->subsample_array_func(ec, s->orig_data, element_count); + marshal_info->subsample_array_func(ec, s->orig_data, (int)element_count); /* fixup size */ set_dynamic_array_size(f, buf, parent_offset, t->next, smd.marshalled_count); @@ -715,7 +715,7 @@ extern FFSEncodeVector copy_all_to_FFSBuffer(FFSBuffer buf, FFSEncodeVector vec) { int i = 0; - int vec_offset = (long) vec - (long)buf->tmp_buffer; + intptr_t vec_offset = (intptr_t) vec - (intptr_t)buf->tmp_buffer; /* * vec and some of the buffers may be in the memory managed by the * FFSBuffer. The goal here to is put *everything* into the FFSBuffer. @@ -724,10 +724,10 @@ copy_all_to_FFSBuffer(FFSBuffer buf, FFSEncodeVector vec) while (vec[vec_count].iov_base != NULL) { vec_count++; } - assert(((unsigned long)vec >= (unsigned long)buf->tmp_buffer) && - ((unsigned long)vec < (unsigned long)buf->tmp_buffer + buf->tmp_buffer_size)); + assert(((uintptr_t)vec >= (uintptr_t)buf->tmp_buffer) && + ((uintptr_t)vec < (uintptr_t)buf->tmp_buffer + buf->tmp_buffer_size)); { - size_t already_in[vec_count]; + size_t* already_in = malloc(sizeof(already_in[0]) * vec_count); while (vec[i].iov_base != NULL) { if (((char*)vec[i].iov_base >= (char*)buf->tmp_buffer) && ((char*)vec[i].iov_base < (char*)buf->tmp_buffer + buf->tmp_buffer_size)) { @@ -744,9 +744,9 @@ copy_all_to_FFSBuffer(FFSBuffer buf, FFSEncodeVector vec) } i = 0; - while (((FFSEncodeVector)((long)buf->tmp_buffer + vec_offset))[i].iov_base != + while (((FFSEncodeVector)((intptr_t)buf->tmp_buffer + vec_offset))[i].iov_base != NULL) { - FFSEncodeVector v = (void*)((long) buf->tmp_buffer + vec_offset); + FFSEncodeVector v = (void*)((intptr_t) buf->tmp_buffer + vec_offset); if (already_in[i] == 0) { /* if this is an external buffer, copy it */ ssize_t offset = add_to_tmp_buffer(buf, v[i].iov_len); @@ -758,17 +758,18 @@ copy_all_to_FFSBuffer(FFSBuffer buf, FFSEncodeVector vec) } i++; } + free(already_in); } /* reallocation done now */ - vec = (void*)((long)buf->tmp_buffer + vec_offset); + vec = (void*)((intptr_t)buf->tmp_buffer + vec_offset); i = 0; while (vec[i].iov_base != NULL) { - if (((long)vec[i].iov_base > 0) && - ((long)vec[i].iov_base <= buf->tmp_buffer_size)) { + if (((intptr_t)vec[i].iov_base > 0) && + ((uintptr_t)vec[i].iov_base <= (uintptr_t)buf->tmp_buffer_size)) { /* * remap pointers into temp so that they're addresses */ - vec[i].iov_base = (void*)((long)vec[i].iov_base + (char *)buf->tmp_buffer - 1); + vec[i].iov_base = (void*)((intptr_t)vec[i].iov_base + (char *)buf->tmp_buffer - 1); } i++; } @@ -974,7 +975,7 @@ FFSset_simple_target(FFSContext c, char *format_name, FMFieldList field_list, si FMStructDescRec struct_list[2]; struct_list[0].format_name = format_name; struct_list[0].field_list = field_list; - struct_list[0].struct_size = struct_size; + struct_list[0].struct_size = (int) struct_size; struct_list[0].opt_info = NULL; struct_list[1].format_name = NULL; struct_list[1].field_list = NULL; @@ -1018,8 +1019,7 @@ typedef struct _conversion_action { } conversion_action, *conversion_action_ptr; static int -in_place_base_conversion_possible(conv) -IOConversionPtr conv; +in_place_base_conversion_possible(IOConversionPtr conv) { switch (conv->conversion_type) { case buffer_and_convert: @@ -1047,8 +1047,7 @@ IOConversionPtr conv; } static int -in_place_variant_conversion_possible(conv) -IOConversionPtr conv; +in_place_variant_conversion_possible(IOConversionPtr conv) { switch (conv->conversion_type) { case copy_dynamic_portion: @@ -1097,14 +1096,10 @@ FFSdecode_in_place_possible(FFSTypeHandle format) } } -#define expand_size_to_align(size) ((((size) & 0x7) == 0) ? (size) : (((size) + 8) & (int) -8)) +#define expand_size_to_align(size) ((((size) & 0x7) == 0) ? (size) : (((size) + 8) & (size_t) -8)) static int -set_conversion_params(ioformat, input_record_len, conv, params) -FFSTypeHandle ioformat; -int64_t input_record_len; -IOConversionPtr conv; -conversion_action_ptr params; +set_conversion_params(FFSTypeHandle ioformat, int64_t input_record_len, IOConversionPtr conv, conversion_action_ptr params) { FFSContext c = ioformat->context; size_t final_base_size; @@ -1121,7 +1116,7 @@ conversion_action_ptr params; ssize_t final_string_offset; void *final_string_address; - final_base_size = expand_size_to_align(ioformat->body->record_length + conv->base_size_delta); + final_base_size = (size_t) expand_size_to_align((size_t)(ioformat->body->record_length + conv->base_size_delta)); src_base_size = expand_size_to_align(ioformat->body->record_length); possible_converted_variant_size = final_variant_size_for_record(input_record_len, conv); @@ -1187,8 +1182,8 @@ conversion_action_ptr params; } else { final_string_offset = 0; final_string_address = - params->final_base + expand_size_to_align(ioformat->body->record_length + - conv->base_size_delta); + params->final_base + (size_t)expand_size_to_align((size_t)(ioformat->body->record_length + + conv->base_size_delta)); } /* set variant src values */ @@ -1241,39 +1236,34 @@ conversion_action_ptr params; } static int64_t -final_variant_size_for_record(input_record_len, conv) -int64_t input_record_len; -IOConversionPtr conv; +final_variant_size_for_record(int64_t input_record_len, IOConversionPtr conv) { return (int) ((input_record_len - conv->ioformat->body->record_length) * conv->max_var_expansion); } -extern int +extern size_t FFS_decode_length_format(FFSContext context, FFSTypeHandle ioformat, - long record_length) + size_t record_length) { IOConversionPtr conv; int64_t variant_part, final_base_size, src_base_size; if (ioformat == NULL) - return -1; + return (size_t)-1; conv = ioformat->conversion; if (!ioformat->conversion) return record_length; variant_part = final_variant_size_for_record(record_length, ioformat->conversion); - final_base_size = expand_size_to_align(ioformat->body->record_length + - conv->base_size_delta); + final_base_size = expand_size_to_align((int64_t)(ioformat->body->record_length + + conv->base_size_delta)); src_base_size = expand_size_to_align(ioformat->body->record_length); return variant_part + Max(final_base_size, src_base_size); } -extern long -FFS_est_decode_length(context, src, record_length) -FFSContext context; -char *src; -long record_length; +extern size_t +FFS_est_decode_length(FFSContext context, char *src, size_t record_length) { FFSTypeHandle ioformat = FFSTypeHandle_from_encode(context, src); return FFS_decode_length_format(context, ioformat, record_length); @@ -1297,18 +1287,13 @@ FFSheader_size(FFSTypeHandle ioformat) extern int -FFShas_conversion(ioformat) -FFSTypeHandle ioformat; +FFShas_conversion(FFSTypeHandle ioformat) { return (ioformat->conversion != NULL); } static int -FFSinternal_decode(ioformat, src, dest, to_buffer) -FFSTypeHandle ioformat; -char *src; /* incoming data to be decoded */ -void *dest; /* area to hold decoded data */ -int to_buffer; +FFSinternal_decode(FFSTypeHandle ioformat, char *src, void *dest, int to_buffer) { FFSContext iofile = ioformat->context; IOConversionPtr conv; @@ -1393,16 +1378,15 @@ int to_buffer; } static int -check_conversion(ioformat) -FFSTypeHandle ioformat; +check_conversion(FFSTypeHandle ioformat) { if (ioformat->conversion == NULL) { if (ioformat->status == not_checked) { FFS_determine_conversion(ioformat->context, ioformat); } if (ioformat->status == none_available) { - fprintf(stderr, "FFS Warning: Attempting to decode when no conversion has been set. \n Record is of type \"%s\", ioformat 0x%lx.\n No data returned.\n", - ioformat->body->format_name, (long) ioformat); + fprintf(stderr, "FFS Warning: Attempting to decode when no conversion has been set. \n Record is of type \"%s\", ioformat 0x%p.\n No data returned.\n", + ioformat->body->format_name, ioformat); ioformat->status = none_available; return 0; } @@ -1411,10 +1395,7 @@ FFSTypeHandle ioformat; } extern int -FFSdecode(iocontext, src, dest) -FFSContext iocontext; -char *src; /* incoming data to be decoded */ -char *dest; /* area to hold decoded data */ +FFSdecode(FFSContext iocontext, char *src, char *dest) { FFSTypeHandle ioformat; ioformat = FFSTypeHandle_from_encode(iocontext, src); @@ -1428,10 +1409,7 @@ char *dest; /* area to hold decoded data */ } extern int -FFSdecode_in_place(iocontext, src, dest_ptr) -FFSContext iocontext; -char *src; /* incoming data to be decoded */ -void **dest_ptr; /* area to hold pointer to decoded data */ +FFSdecode_in_place(FFSContext iocontext, char *src, void **dest_ptr) { FFSTypeHandle ioformat = FFSTypeHandle_from_encode(iocontext, src); int header_size; @@ -1451,10 +1429,7 @@ void **dest_ptr; /* area to hold pointer to decoded data */ } extern int -FFSdecode_to_buffer(iocontext, src, dest) -FFSContext iocontext; -char *src; /* incoming data to be decoded */ -void *dest; /* area to hold decoded data */ +FFSdecode_to_buffer(FFSContext iocontext, char *src, void *dest) { FFSTypeHandle ioformat; ioformat = FFSTypeHandle_from_encode(iocontext, src); @@ -1468,9 +1443,7 @@ void *dest; /* area to hold decoded data */ } extern FFSTypeHandle -FFS_target_from_encode(c, data) -FFSContext c; -char *data; /* incoming data to be decoded */ +FFS_target_from_encode(FFSContext c, char *data) { FFSTypeHandle f; /* first element in encoded buffer is format ID */ @@ -1486,9 +1459,7 @@ char *data; /* incoming data to be decoded */ } static void -byte_swap(data, size) -char *data; -int size; +byte_swap(char *data, int size) { int i; assert((size % 2) == 0); @@ -1522,14 +1493,13 @@ create_fixed_FFSBuffer(char *buffer, size_t size) { FFSBuffer buf = malloc(sizeof(struct _FFSBuffer)); buf->tmp_buffer = buffer; - buf->tmp_buffer_size = -size; + buf->tmp_buffer_size = -(ssize_t)size; buf->tmp_buffer_in_use_size = 0; return buf; } void -free_FFSBuffer(buf) -FFSBuffer buf; +free_FFSBuffer(FFSBuffer buf) { if ((buf->tmp_buffer_size > 0) && buf->tmp_buffer) free(buf->tmp_buffer); @@ -1538,9 +1508,7 @@ FFSBuffer buf; extern char * -make_tmp_buffer(buf, size) -FFSBuffer buf; -int64_t size; +make_tmp_buffer(FFSBuffer buf, int64_t size) { if (buf->tmp_buffer_size < 0) { /* fixed size buffer */ @@ -1566,22 +1534,20 @@ int64_t size; static ssize_t -add_to_tmp_buffer(buf, size) -FFSBuffer buf; -size_t size; +add_to_tmp_buffer(FFSBuffer buf, size_t size) { - long old_size = buf->tmp_buffer_in_use_size; + ssize_t old_size = buf->tmp_buffer_in_use_size; size += old_size; if (buf->tmp_buffer_size < 0) { /* fixed size buffer */ - if (size > (-buf->tmp_buffer_size)) return -1; + if (size > (size_t)(-buf->tmp_buffer_size)) return -1; } else { if (buf->tmp_buffer_size == 0) { int64_t tmp_size = Max(size, TMP_BUFFER_INIT_SIZE); buf->tmp_buffer = malloc(tmp_size); } - if (size > buf->tmp_buffer_size) { + if (size > (size_t)buf->tmp_buffer_size) { buf->tmp_buffer = realloc(buf->tmp_buffer, size); buf->tmp_buffer_size = size; } @@ -1611,14 +1577,13 @@ set_bigendian () { words_bigendian = (u.c[sizeof (long) - 1] == 1); return words_bigendian; } - +#ifndef WORDS_BIGENDIAN #define WORDS_BIGENDIAN ((words_bigendian == -1) ? set_bigendian() : words_bigendian) #endif +#endif -static unsigned long -quick_get_ulong(iofield, data) -FMFieldPtr iofield; -void *data; +static size_t +quick_get_ulong(FMFieldPtr iofield, void *data) { data = (void *) ((char *) data + iofield->offset); /* only used when field type is an integer and aligned by its size */ @@ -1656,9 +1621,7 @@ void *data; } static void * -quick_get_pointer(iofield, data) -FMFieldPtr iofield; -void *data; +quick_get_pointer(FMFieldPtr iofield, void *data) { union { void *p; @@ -1682,14 +1645,14 @@ void *data; break; } case 8: -#if SIZEOF_LONG == 8 +#if SIZEOF_SIZE_T == 8 memcpy(&u.p, data, 8); #else { int tmp; /* must be fetching 4 bytes of the 8 available */ if (WORDS_BIGENDIAN) - memcpy(&tmp, data + 4, 4); + memcpy(&tmp, ((char*)data) + 4, 4); else memcpy(&tmp, data, 4); u.tmp = (unsigned long) tmp; @@ -1701,10 +1664,7 @@ void *data; } void -quick_put_ulong(iofield, value, data) -FMFieldPtr iofield; -unsigned long value; -void *data; +quick_put_ulong(FMFieldPtr iofield, size_t value, void *data) { data = (void *) ((char *) data + iofield->offset); /* only used when field type is an integer and aligned by its size */ @@ -1721,7 +1681,7 @@ void *data; break; } case 8:{ - unsigned long tmp = value; + size_t tmp = value; memcpy(data, &tmp, 8); break; } diff --git a/ffs/ffs.h.in b/ffs/ffs.h.in index 49956eb218..3708464633 100644 --- a/ffs/ffs.h.in +++ b/ffs/ffs.h.in @@ -51,13 +51,13 @@ typedef struct _FFSTypeHandle *FFSTypeHandle; typedef struct _FFSIndexItem *FFSIndexItem; #define create_FFSContext() create_FFSContext_FM(NULL) -extern FFSContext create_FFSContext_FM(FMContext fmc); +extern FFS_DECLSPEC FFSContext create_FFSContext_FM(FMContext fmc); -extern FFSBuffer create_FFSBuffer(); -extern FFSBuffer create_fixed_FFSBuffer(char *buffer, size_t size); -extern void free_FFSBuffer(FFSBuffer buf); +extern FFS_DECLSPEC FFSBuffer create_FFSBuffer(); +extern FFS_DECLSPEC FFSBuffer create_fixed_FFSBuffer(char *buffer, size_t size); +extern FFS_DECLSPEC void free_FFSBuffer(FFSBuffer buf); -extern char * +extern FFS_DECLSPEC char * FFSencode(FFSBuffer b, FMFormat ioformat, void *data, size_t *buf_size); typedef struct FFSEncodeVec { @@ -65,133 +65,133 @@ typedef struct FFSEncodeVec { @UIO_SIZE_T_TYPE@ iov_len; } *FFSEncodeVector; -extern FFSEncodeVector +extern FFS_DECLSPEC FFSEncodeVector FFSencode_vector(FFSBuffer b, FMFormat fmformat, void *data); -extern char * +extern FFS_DECLSPEC char * FFSencode_no_leaf_copy(FFSBuffer b, FMFormat fmformat, void *data, size_t *buf_size); -extern int FFSdecode_in_place_possible(FFSTypeHandle); +extern FFS_DECLSPEC int FFSdecode_in_place_possible(FFSTypeHandle); -extern FFSTypeHandle FFSTypeHandle_from_encode(FFSContext c, char *b); +extern FFS_DECLSPEC FFSTypeHandle FFSTypeHandle_from_encode(FFSContext c, char *b); -extern FFSTypeHandle FFSTypeHandle_by_index(FFSContext c, int index); +extern FFS_DECLSPEC FFSTypeHandle FFSTypeHandle_by_index(FFSContext c, int index); -extern char * FFSTypeHandle_name(FFSTypeHandle f); +extern FFS_DECLSPEC char * FFSTypeHandle_name(FFSTypeHandle f); -extern void +extern FFS_DECLSPEC void establish_conversion(FFSContext c, FFSTypeHandle f, FMStructDescList struct_list); -extern int +extern FFS_DECLSPEC int FFShas_conversion(FFSTypeHandle format); -extern long -FFS_est_decode_length(FFSContext context, char *encoded, long record_length); +extern FFS_DECLSPEC size_t +FFS_est_decode_length(FFSContext context, char *encoded, size_t record_length); -extern int +extern FFS_DECLSPEC int FFSdecode_in_place(FFSContext context, char *encode, void **dest_ptr); -extern int +extern FFS_DECLSPEC int FFSdecode_to_buffer(FFSContext context, char *encode, void *dest); -extern int +extern FFS_DECLSPEC int FFSdecode(FFSContext context, char *encode, char *dest); -extern FFSTypeHandle +extern FFS_DECLSPEC FFSTypeHandle FFSset_fixed_target(FFSContext c, FMStructDescList struct_list); -extern FFSTypeHandle +extern FFS_DECLSPEC FFSTypeHandle FFS_target_from_encode(FFSContext c, char *data); -extern FMFormat +extern FFS_DECLSPEC FMFormat FMFormat_of_original(FFSTypeHandle h); -extern FFSEncodeVector +extern FFS_DECLSPEC FFSEncodeVector copy_all_to_FFSBuffer(FFSBuffer buf, FFSEncodeVector vec); -extern FFSEncodeVector +extern FFS_DECLSPEC FFSEncodeVector copy_vector_to_FFSBuffer(FFSBuffer buf, FFSEncodeVector vec); -extern FMContext +extern FFS_DECLSPEC FMContext FMContext_from_FFS(FFSContext c); -extern void +extern FFS_DECLSPEC void free_FFSContext(FFSContext c); -extern FMStructDescList +extern FFS_DECLSPEC FMStructDescList get_localized_formats(FMFormat f); /* file interface follows*/ -extern FFSFile +extern FFS_DECLSPEC FFSFile open_FFSfile(const char *path, const char *flags); -extern FFSFile +extern FFS_DECLSPEC FFSFile open_FFSfd(void *fd, const char *flags); -extern void +extern FFS_DECLSPEC void close_FFSfile(FFSFile file); -extern void +extern FFS_DECLSPEC void free_FFSfile(FFSFile file); -extern int +extern FFS_DECLSPEC int write_FFSfile(FFSFile f, FMFormat format, void *data); -extern int +extern FFS_DECLSPEC int write_FFSfile_attrs(FFSFile f, FMFormat format, void *data, attr_list attrs); -extern int +extern FFS_DECLSPEC int write_comment_FFSfile(FFSFile f, const char *comment); -extern long +extern FFS_DECLSPEC size_t FFSfile_next_decode_length(FFSFile iofile); typedef enum { FFSerror=1, FFSend=2, FFSdata=4, FFSformat=8, FFScomment=16, FFSindex=32 } FFSRecordType; -extern void +extern FFS_DECLSPEC void FFSset_visible(FFSFile ffsfile, int bitmap); -extern FFSRecordType +extern FFS_DECLSPEC FFSRecordType FFSnext_record_type(FFSFile ffsfile); -extern long +extern FFS_DECLSPEC size_t FFSnext_data_length(FFSFile file); -extern FFSTypeHandle +extern FFS_DECLSPEC FFSTypeHandle FFSnext_type_handle(FFSFile ffsfile); -extern char * +extern FFS_DECLSPEC char * FFSread_comment(FFSFile ffsfile); -extern int +extern FFS_DECLSPEC int FFSread(FFSFile ffsfile, void *dest); -extern int +extern FFS_DECLSPEC int FFSread_attr(FFSFile file, void *dest, attr_list *attr); -extern int +extern FFS_DECLSPEC int FFSread_to_buffer(FFSFile file, FFSBuffer b, void **dest); -extern attr_list +extern FFS_DECLSPEC attr_list FFSattrs_from_last_read(FFSFile file); -extern FFSTypeHandle +extern FFS_DECLSPEC FFSTypeHandle FFSread_format(FFSFile ffsfile); -extern FFSIndexItem +extern FFS_DECLSPEC FFSIndexItem FFSread_index(FFSFile ffsfile); -extern FFSContext +extern FFS_DECLSPEC FFSContext FFSContext_of_file(FFSFile f); -extern FMContext +extern FFS_DECLSPEC FMContext FMContext_of_file(FFSFile f); -extern int +extern FFS_DECLSPEC int FFSseek(FFSFile file, int data_item); #if defined(__cplusplus) || defined(c_plusplus) diff --git a/ffs/ffs_conv.c b/ffs/ffs_conv.c index 5d4c5f5196..938c929c36 100755 --- a/ffs/ffs_conv.c +++ b/ffs/ffs_conv.c @@ -13,6 +13,7 @@ #endif #include #include +#include #ifdef HAVE_DILL_H #include "dill.h" @@ -95,8 +96,7 @@ static char *float_format_str[] = { static int IO_shut_up = 0; static int -min_align_size(size) -int size; +min_align_size(int size) { int align_size = 8; /* conservative on current machines */ switch (size) { @@ -172,8 +172,7 @@ init_float_formats() void -FFSfree_conversion(conv) -IOConversionPtr conv; +FFSfree_conversion(IOConversionPtr conv) { int i; for (i = 0; i < conv->conv_count; i++) { @@ -206,10 +205,7 @@ IOConversionPtr conv; * */ static void -field_name_strip_get_default(io_field, out_field_name, default_val) -const FMField *io_field; -char *out_field_name; -void **default_val; +field_name_strip_get_default(const FMField *io_field, char *out_field_name, void **default_val) { char *s, *s1; char *base_type = base_data_type(io_field->field_type); @@ -282,21 +278,9 @@ find_field_for_conv(char *field_name, FMFieldList fields, int cur_field, void *s static IOConversionPtr -create_conversion(src_ioformat, target_field_list, target_struct_size, - pointer_size, byte_reversal, target_fp_format, - initial_conversion, target_column_major, - string_offset_size, converted_strings, target_list) -FFSTypeHandle src_ioformat; -FMFieldList target_field_list; -int target_struct_size; -int pointer_size; -int byte_reversal; -FMfloat_format target_fp_format; -IOconversion_type initial_conversion; -int target_column_major; -int string_offset_size; -int converted_strings; -FMStructDescList target_list; +create_conversion(FFSTypeHandle src_ioformat, FMFieldList target_field_list, int target_struct_size, int pointer_size, + int byte_reversal, FMfloat_format target_fp_format, IOconversion_type initial_conversion, + int target_column_major, int string_offset_size, int converted_strings, FMStructDescList target_list) { int target_field_count = count_FMfield(target_field_list); FMFieldList nfl_sort = copy_field_list(target_field_list); @@ -609,10 +593,10 @@ FMStructDescList target_list; } } else { - fprintf(stderr, "Unknown field type for field %s ->\"%s\", format %lx\n", + fprintf(stderr, "Unknown field type for field %s ->\"%s\", format %p\n", input_field.field_name, src_ioformat->body->field_list[input_index].field_type, - (long)src_ioformat); + src_ioformat); FFSfree_conversion(conv_ptr); return NULL; } @@ -665,14 +649,8 @@ FMStructDescList target_list; extern void -set_general_IOconversion_for_format(iofile, file_ioformat, native_field_list, - native_struct_size, pointer_size, target_list) -FFSContext iofile; -FFSTypeHandle file_ioformat; -FMFieldList native_field_list; -int native_struct_size; -int pointer_size; -FMStructDescList target_list; +set_general_IOconversion_for_format(FFSContext iofile, FFSTypeHandle file_ioformat, FMFieldList native_field_list, + int native_struct_size, int pointer_size, FMStructDescList target_list) { IOConversionPtr conv_ptr; IOconversion_type conv_type = none_required; @@ -704,10 +682,7 @@ FMStructDescList target_list; } static int -set_conversion_from_list(iocontext, ioformat, struct_list) -FFSContext iocontext; -FFSTypeHandle ioformat; -FMStructDescList struct_list; +set_conversion_from_list(FFSContext iocontext, FFSTypeHandle ioformat, FMStructDescList struct_list) { int i = 0; while(struct_list[i].format_name != NULL) { @@ -764,10 +739,7 @@ static void link_conversion_sets(FFSTypeHandle ioformat){} extern void -establish_conversion(iocontext, ioformat, struct_list) -FFSContext iocontext; -FFSTypeHandle ioformat; -FMStructDescList struct_list; +establish_conversion(FFSContext iocontext, FFSTypeHandle ioformat, FMStructDescList struct_list) { int use_package = 0; @@ -780,12 +752,7 @@ FMStructDescList struct_list; } extern void -ffs_internal_convert_field(src_spec, src, dest_type, dest_size, dest) -FMFieldPtr src_spec; -void *src; -FMdata_type dest_type; -int dest_size; -void *dest; +ffs_internal_convert_field(FMFieldPtr src_spec, void *src, FMdata_type dest_type, int dest_size, void *dest) { int float_OK = 1; if (dest_type == float_type) { @@ -833,10 +800,13 @@ void *dest; *dest_field = (short) tmp; } else if (dest_size == sizeof(int)) { int *dest_field = (int *) dest; - *dest_field = tmp; + *dest_field = (int) tmp; } else if (dest_size == sizeof(long)) { - long *dest_field = (long *) dest; - *dest_field = tmp; + long* dest_field = (long*)dest; + *dest_field = (long)tmp; + } else if (dest_size == sizeof(size_t)) { + size_t* dest_field = (size_t*)dest; + *dest_field = (long)tmp; #if SIZEOF_LONG_LONG != 0 } else if (dest_size == sizeof(long long)) { long long lltmp = tmp; @@ -847,7 +817,7 @@ void *dest; } case char_type: { - char tmp = get_big_int(src_spec, src); + char tmp = (char)get_big_int(src_spec, src); char *dest_field = (char *) dest; *dest_field = tmp; break; @@ -855,7 +825,7 @@ void *dest; case boolean_type: case enumeration_type: { - int tmp = get_big_int(src_spec, src); + int tmp = (int) get_big_int(src_spec, src); int *dest_field = (int *) dest; *dest_field = tmp; break; @@ -870,10 +840,10 @@ void *dest; unsigned short *dest_field = (unsigned short *) dest; *dest_field = (unsigned short) tmp; } else if (dest_size == sizeof(int)) { - unsigned int *dest_field = (unsigned int *) dest; - *dest_field = tmp; - } else if (dest_size == sizeof(long)) { - unsigned long *dest_field = (unsigned long *) dest; + unsigned int* dest_field = (unsigned int*)dest; + *dest_field = (unsigned int)tmp; + } else if (dest_size == sizeof(size_t)) { + size_t* dest_field = (size_t*)dest; *dest_field = tmp; #if SIZEOF_LONG_LONG != 0 } else if (dest_size == sizeof(long long)) { @@ -933,10 +903,10 @@ typedef struct conv_status { void *dest; void *src_pointer_base; void *dest_pointer_base; - int src_offset_adjust; - int dest_offset_adjust; - int cur_offset; - int *control_value; + ssize_t src_offset_adjust; + ssize_t dest_offset_adjust; + size_t cur_offset; + size_t *control_value; int target_pointer_size; int src_pointer_size; int register_args; @@ -946,7 +916,7 @@ typedef struct conv_status { typedef struct run_time_conv_status { void *src_pointer_base; void *dest_pointer_base; - int dest_offset_adjust; + ssize_t dest_offset_adjust; } *RTConvStatus; static void @@ -954,9 +924,7 @@ internal_convert_record(IOConversionPtr conv, ConvStatus conv_status, void *src, void *dest, int data_already_copied); static void -print_IOConversion(conv_ptr, indent) -IOConversionPtr conv_ptr; -int indent; +print_IOConversion(IOConversionPtr conv_ptr, int indent) { int i; int ind; @@ -988,12 +956,12 @@ int indent; } for (ind = 0; ind < indent; ind++) printf(" "); - printf(" base_size_delta=%d, max_var_exp=%g, target_pointer_size=%d, string_offset=%d, converted_strings=%d\n", + printf(" base_size_delta=%zd, max_var_exp=%g, target_pointer_size=%d, string_offset=%zd, converted_strings=%d\n", conv_ptr->base_size_delta, conv_ptr->max_var_expansion, conv_ptr->target_pointer_size, conv_ptr->string_offset_size, conv_ptr->converted_strings); - printf(" conversion_function= %lx, required_align=%d\n", - (long) conv_ptr->conv_func, conv_ptr->required_alignment); + printf(" conversion_function= %p, required_align=%d\n", + conv_ptr->conv_func, conv_ptr->required_alignment); for (ind = 0; ind < indent; ind++) printf(" "); printf(" There are %d conversions registered:\n", conv_ptr->conv_count); @@ -1042,7 +1010,7 @@ int indent; for (ind = 0; ind < indent; ind++) printf(" "); if (conv_ptr->conversions[i].default_value == NULL) { - printf(" Src offset : %d size %d\n", src_field->offset, + printf(" Src offset : %zd size %d\n", src_field->offset, src_field->size); } else { int j; @@ -1054,7 +1022,7 @@ int indent; } for (ind = 0; ind < indent; ind++) printf(" "); - printf(" Dst offset : %d size %d\n", + printf(" Dst offset : %zd size %d\n", conv_ptr->conversions[i].dest_offset, conv_ptr->conversions[i].dest_size); if (conv_ptr->conversions[i].subconversion) { @@ -1072,9 +1040,7 @@ int indent; } static void -print_IOConversion_as_XML(conv_ptr, indent) -IOConversionPtr conv_ptr; -int indent; +print_IOConversion_as_XML(IOConversionPtr conv_ptr, int indent) { int i; int ind; @@ -1107,10 +1073,10 @@ int indent; } for (ind = 0; ind < indent; ind++) printf(" "); - printf("%d\n", conv_ptr->base_size_delta); + printf("%zd\n", conv_ptr->base_size_delta); printf("%g\n", conv_ptr->max_var_expansion); printf("%d\n", conv_ptr->target_pointer_size); - printf("%d\n", conv_ptr->string_offset_size); + printf("%zd\n", conv_ptr->string_offset_size); printf("%d\n", conv_ptr->converted_strings); for (ind = 0; ind < indent; ind++) printf(" "); @@ -1151,12 +1117,12 @@ int indent; } for (ind = 0; ind < indent; ind++) printf(" "); - printf("%d%d\n", + printf("%zd%d\n", src_field->offset, src_field->size); for (ind = 0; ind < indent; ind++) printf(" "); - printf("%d%d\n", + printf("%zd%d\n", conv_ptr->conversions[i].dest_offset, conv_ptr->conversions[i].dest_size); if (conv_ptr->conversions[i].subconversion) { @@ -1175,26 +1141,19 @@ int indent; extern void -dump_IOConversion(conv_ptr) -IOConversionPtr conv_ptr; +dump_IOConversion(IOConversionPtr conv_ptr) { print_IOConversion(conv_ptr, 0); } extern void -dump_IOConversion_as_XML(conv_ptr) -IOConversionPtr conv_ptr; +dump_IOConversion_as_XML(IOConversionPtr conv_ptr) { print_IOConversion_as_XML(conv_ptr, 0); } void -FFSconvert_record(conv, src, dest, final_string_base, src_string_base) -IOConversionPtr conv; -void *src; -void *dest; -void *final_string_base; -void *src_string_base; +FFSconvert_record(IOConversionPtr conv, void *src, void *dest, void *final_string_base, void *src_string_base) { struct conv_status cs; if (src_string_base == NULL) { @@ -1206,13 +1165,13 @@ void *src_string_base; int i; int limit = 30; int *tmp = (int *) (((char *) src_string_base) - - (((long) src_string_base) % 4)); + (((intptr_t) src_string_base) % 4)); printf("record of type \"%s\", contents :\n", conv->ioformat->body->format_name); if (limit * sizeof(int) > conv->ioformat->body->record_length) limit = conv->ioformat->body->record_length / sizeof(int); for (i = 0; i < limit; i += 4) { - printf("%lx: %8x %8x %8x %8x\n", (long) ((char *) src) + (i * 4), + printf("%p: %8x %8x %8x %8x\n", ((char *) src) + (i * 4), ((int *) src)[i], ((int *) src)[i + 1], ((int *) src)[i + 2], ((int *) src)[i + 3]); } @@ -1233,7 +1192,7 @@ void *src_string_base; } } */ for (i = 0; i < limit; i += 4) { - printf("%lx: %8x %8x %8x %8x\n", (long) ((char *) tmp) + (i * 4), + printf("%p: %8x %8x %8x %8x\n", ((char *) tmp) + (i * 4), ((int *) tmp)[i], ((int *) tmp)[i + 1], ((int *) tmp)[i + 2], @@ -1243,14 +1202,14 @@ void *src_string_base; } rtcs.src_pointer_base = src_string_base; rtcs.dest_pointer_base = final_string_base; - rtcs.dest_offset_adjust = -conv->string_offset_size; + rtcs.dest_offset_adjust = -(ssize_t) conv->string_offset_size; conv->conv_func(src, dest, &rtcs); return; } else { cs.src_pointer_base = src_string_base; cs.dest_pointer_base = final_string_base; - cs.src_offset_adjust = -conv->string_offset_size; - cs.dest_offset_adjust = -conv->string_offset_size; + cs.src_offset_adjust = -(ssize_t)conv->string_offset_size; + cs.dest_offset_adjust = -(ssize_t)conv->string_offset_size; cs.cur_offset = 0; cs.control_value = NULL; cs.target_pointer_size = conv->target_pointer_size; @@ -1261,20 +1220,21 @@ void *src_string_base; } void -transpose_array(int *dimens, char *src, char *dest, int source_column_major, +transpose_array(size_t *dimens, char *src, char *dest, int source_column_major, FMdata_type dest_type, int dest_size, FMFieldPtr src_spec) { int dimen_count = 0; - int *index; - int i, cur_index; - int jump = 1; + size_t *index; + size_t i; + ssize_t cur_index; + size_t jump = 1; while (dimens[dimen_count] != 0) dimen_count++; struct _FMgetFieldStruct tmp_spec = *src_spec; if (dimen_count <= 1) return; - index = malloc(sizeof(int) * dimen_count); + index = malloc(sizeof(index[0]) * dimen_count); for(i = 0; i< dimen_count; i++) { index[i] = 0; } @@ -1285,8 +1245,8 @@ transpose_array(int *dimens, char *src, char *dest, int source_column_major, } while(index[0] < dimens[0]) { if (cur_index == (dimen_count-1)) { - int col_index_base = 0; - int row_index_base = 0; + size_t col_index_base = 0; + size_t row_index_base = 0; int i; void * dest_field; if (dimen_count >= 2) { @@ -1353,7 +1313,7 @@ transpose_array(int *dimens, char *src, char *dest, int source_column_major, free(index); } -static long +static size_t get_offset_for_addr(char *src_field_addr, ConvStatus conv_status, IOconvFieldStruct *conv) { @@ -1377,7 +1337,7 @@ convert_address_field(char *src_field_addr, char **output_source_ptr, int dest_size = conv_status->target_pointer_size; char *output_dest = NULL; char *output_source = NULL; - int offset = get_offset_for_addr(src_field_addr, conv_status, + size_t offset = get_offset_for_addr(src_field_addr, conv_status, conv); if (offset != 0) { int align_tmp = 0; @@ -1387,7 +1347,7 @@ convert_address_field(char *src_field_addr, char **output_source_ptr, output_dest = (char*)conv_status->dest_pointer_base + offset + conv_status->dest_offset_adjust; - if ((align_tmp = (((unsigned long)output_dest) % required_alignment)) != 0) { + if ((align_tmp = (((uintptr_t)output_dest) % required_alignment)) != 0) { output_dest += (required_alignment - align_tmp); conv_status->dest_offset_adjust += (required_alignment - align_tmp); } @@ -1402,7 +1362,7 @@ convert_address_field(char *src_field_addr, char **output_source_ptr, static void -new_convert_address_field(int offset, char **output_source_ptr, +new_convert_address_field(size_t offset, char **output_source_ptr, char *dest_field_addr, char **output_dest_ptr, ConvStatus conv_status, int required_alignment) { @@ -1418,7 +1378,7 @@ new_convert_address_field(int offset, char **output_source_ptr, output_dest = (char*)conv_status->dest_pointer_base + offset + conv_status->dest_offset_adjust; - if ((align_tmp = (((unsigned long)output_dest) % required_alignment)) != 0) { + if ((align_tmp = (((uintptr_t)output_dest) % required_alignment)) != 0) { output_dest += (required_alignment - align_tmp); conv_status->dest_offset_adjust += (required_alignment - align_tmp); } @@ -1431,7 +1391,7 @@ new_convert_address_field(int offset, char **output_source_ptr, } } -static int +static ssize_t decode_size_delta(ConvStatus conv_status, IOconvFieldStruct *conv, FMTypeDesc *type_desc) { @@ -1470,7 +1430,6 @@ item_size(ConvStatus conv_status, return 0; } - static void new_convert_field(char *src_field_addr, char *dest_field_addr, ConvStatus conv_status, @@ -1480,7 +1439,7 @@ new_convert_field(char *src_field_addr, char *dest_field_addr, switch(type_desc->type) { case FMType_pointer: { char *new_src, *new_dest; - int offset = get_offset_for_addr(src_field_addr, conv_status, + size_t offset = get_offset_for_addr(src_field_addr, conv_status, conv); new_convert_address_field(offset, &new_src, dest_field_addr, &new_dest, conv_status, 8); @@ -1538,7 +1497,7 @@ new_convert_field(char *src_field_addr, char *dest_field_addr, break; } case FMType_array: { - int elements = 1, i; + size_t elements = 1, i; char *new_src = src_field_addr; char *new_dest = dest_field_addr; FMTypeDesc *next = type_desc; @@ -1553,8 +1512,8 @@ new_convert_field(char *src_field_addr, char *dest_field_addr, } if (conv->rc_swap == no_row_column_swap) { if (!data_already_copied) { - int base_delta = decode_size_delta(conv_status, conv, next); - int total_delta = base_delta * elements; + ssize_t base_delta = decode_size_delta(conv_status, conv, next); + size_t total_delta = base_delta * elements; conv_status->dest_offset_adjust += total_delta; if (conv_status->global_conv->conversion_type == copy_dynamic_portion) { int base_size = item_size(conv_status, conv, next); @@ -1595,7 +1554,7 @@ new_convert_field(char *src_field_addr, char *dest_field_addr, int source_column_major = (conv->rc_swap == swap_source_column_major); int dimen_count = conv->iovar->dimen_count; - int *dimens = malloc(sizeof(int) * (dimen_count + 1)); + size_t *dimens = malloc(sizeof(dimens[0]) * (dimen_count + 1)); int i = 0; FMdata_type dest_type = conv->src_field.data_type; int dest_size = conv->dest_size; @@ -1625,22 +1584,18 @@ new_convert_field(char *src_field_addr, char *dest_field_addr, } static void -internal_convert_record(conv, conv_status, src, dest, data_already_copied) -IOConversionPtr conv; -ConvStatus conv_status; -void *src; -void *dest; -int data_already_copied; +internal_convert_record(IOConversionPtr conv, ConvStatus conv_status, void *src, + void *dest, int data_already_copied) { int i; - int *control_value = NULL; + size_t *control_value = NULL; if (conv->conversion_type == none_required) return; for (i = 0; i < conv->conv_count; i++) { FMTypeDesc *next = &conv->conversions[i].iovar->type_desc; while (next != NULL) { if ((next->type == FMType_array) && (next->static_size == 0)) { - long elements; + size_t elements; FMFormat f = conv->ioformat->body; int field = next->control_field_index; struct _FMgetFieldStruct tmp_src_spec; @@ -1652,7 +1607,7 @@ int data_already_copied; elements = get_big_int(&tmp_src_spec, src); if (control_value == NULL) { int j; - control_value = (int *) malloc(sizeof(int) * f->field_count); + control_value = (size_t *) malloc(sizeof(control_value[0]) * f->field_count); for (j = 0; j < f->field_count; j++) control_value[j] = 0; conv_status->control_value = control_value; @@ -1702,9 +1657,7 @@ int data_already_copied; static MAX_INTEGER_TYPE -get_big_int(iofield, data) -FMFieldPtr iofield; -void *data; +get_big_int(FMFieldPtr iofield, void *data) { if (iofield->data_type == integer_type) { if (iofield->size == sizeof(char)) { @@ -1731,7 +1684,7 @@ void *data; return tmp; } else if (iofield->size == 2 * sizeof(long)) { long tmp; - int low_bytes_offset = iofield->offset; + size_t low_bytes_offset = iofield->offset; if (WORDS_BIGENDIAN) { if (!iofield->byte_swap) { low_bytes_offset += sizeof(long); @@ -1771,9 +1724,7 @@ void *data; } static MAX_UNSIGNED_TYPE -get_big_unsigned(iofield, data) -FMFieldPtr iofield; -void *data; +get_big_unsigned(FMFieldPtr iofield, void *data) { if ((iofield->data_type == unsigned_type) || (iofield->data_type == enumeration_type) || @@ -1802,7 +1753,7 @@ void *data; return tmp; } else if (iofield->size == 2 * sizeof(long)) { unsigned long tmp; - int low_bytes_offset = iofield->offset; + size_t low_bytes_offset = iofield->offset; if (WORDS_BIGENDIAN) { if (!iofield->byte_swap) { low_bytes_offset += sizeof(long); @@ -1870,9 +1821,7 @@ float_conversion(unsigned char*value, int size, FMfloat_format src_format, } static MAX_FLOAT_TYPE -get_big_float(iofield, data) -FMFieldPtr iofield; -void *data; +get_big_float(FMFieldPtr iofield, void *data) { if (iofield->data_type == float_type) { if (iofield->size == sizeof(float)) { @@ -1946,9 +1895,7 @@ void *data; } static void -byte_swap(data, size) -char *data; -int size; +byte_swap(char *data, int size) { int i; assert((size % 2) == 0); @@ -1966,10 +1913,7 @@ int ffs_getreg(dill_stream s, int *reg_p, int type, int var_tmp){return 0;} int ffs_localb(void*s, int size) {return 0;} extern conv_routine -generate_conversion(conv, src_alignment, dest_alignment) -IOConversionPtr conv; -int src_alignment; -int dest_alignment; +generate_conversion(IOConversionPtr conv, int src_alignment, int dest_alignment) { return NULL; } @@ -1979,8 +1923,7 @@ int dest_alignment; #define max(x,y) (xdata_type) { case integer_type: @@ -2017,9 +1960,7 @@ struct _FMgetFieldStruct *field; } static int -conv_required_alignment(c, conv) -dill_stream c; -IOConversionPtr conv; +conv_required_alignment(dill_stream c, IOConversionPtr conv) { if (conv->conv_count == 0) return 0; return conv->ioformat->body->alignment; @@ -2116,14 +2057,10 @@ static void NO_SANITIZE_THREAD read_generation_environment_variables(void) extern - conv_routine -generate_conversion(conv, src_alignment, dest_alignment) -IOConversionPtr conv; -int src_alignment; -int dest_alignment; +conv_routine +generate_conversion(IOConversionPtr conv, int src_alignment, int dest_alignment) { dill_stream c = NULL; - dill_exec_handle conversion_handle; void (*conversion_routine)(); dill_reg args[6]; dill_reg tmp_regs[10]; @@ -2213,7 +2150,7 @@ int dest_alignment; if (debug_code_generation()) { if (register_args) { dill_reg src_pointer_base, dest_pointer_base, dest_offset_adjust; dill_scallv(c, (void*)printf, "printf", "%P%P%p%p%p", - "convert for %s called with src= %lx, dest %lx, rt_conv_status =%lx\n", + "convert for %s called with src= %p, dest %p, rt_conv_status =%p\n", format_name, args[0], args[1], args[2]); ffs_getreg(c, &src_pointer_base, DILL_P, DILL_VAR); dill_ldpi(c, src_pointer_base, args[2], FMOffset(RTConvStatus,src_pointer_base)); @@ -2222,7 +2159,7 @@ int dest_alignment; ffs_getreg(c, &dest_offset_adjust, DILL_I, DILL_VAR); dill_ldpi(c, dest_offset_adjust, args[2], FMOffset(RTConvStatus,dest_offset_adjust)); dill_scallv(c, (void*)printf, "printf", "%P%p%p%p", - "rt_conv_status is src_pointer_base= %lx, dest_pointer_base=%lx, dest_offset_adjust =%lx\n", + "rt_conv_status is src_pointer_base= %p, dest_pointer_base=%p, dest_offset_adjust =%zd\n", src_pointer_base, dest_pointer_base, dest_offset_adjust); } else { #ifdef HAVE_DILL_H @@ -2232,11 +2169,11 @@ int dest_alignment; } #endif dill_scallv(c, (void*)printf, "printf", "%P%P%p%p", - "convert for %s called with src= %lx, dest %lx\n", + "convert for %s called with src= %p, dest %p\n", format_name, args[0], args[1]); dill_ldpi(c, v_at, dill_lp(c), args[2]); dill_scallv(c, (void*)printf, "printf", "%P%p", - " rt_conv_status %lx\n", + " rt_conv_status %p\n", v_at); #ifdef HAVE_DILL_H dill_raw_putreg(c, v_at, DILL_I); @@ -2268,7 +2205,7 @@ int dest_alignment; dill_anduli(c, tmp, args[0], mask); dill_beqli(c, tmp, 0, zero_target); dill_scallv(c, (void*)printf, "printf", "%P%P%p%I", - "convert for %s called with bad align src= %lx, align is %d\n", + "convert for %s called with bad align src= %p, align is %d\n", format_name, args[0], conv->required_alignment); dill_mark_label(c, zero_target); } @@ -2276,8 +2213,8 @@ int dest_alignment; cs.src_pointer_base = 0; cs.dest_pointer_base = 0; - cs.src_offset_adjust = -conv->string_offset_size; - cs.dest_offset_adjust = -conv->string_offset_size; + cs.src_offset_adjust = -(ssize_t)conv->string_offset_size; + cs.dest_offset_adjust = -(ssize_t)conv->string_offset_size; cs.cur_offset = 0; cs.control_value = NULL; cs.target_pointer_size = conv->target_pointer_size; @@ -2295,7 +2232,11 @@ int dest_alignment; dill_free_stream(c); return NULL; } else { + dill_exec_handle conversion_handle; + conversion_handle = dill_finalize(c); + dill_free_handle(conversion_handle); + conversion_handle = dill_get_handle(c); conv->free_data = conversion_handle; conv->free_func = (void(*)(void*))&dill_free_handle; conversion_routine = (void(*)()) dill_get_fp(conversion_handle); @@ -2311,8 +2252,8 @@ int dest_alignment; static void gen_mem_float_conv(dill_stream c, struct _FMgetFieldStruct src, int src_addr, - int src_offset, int assume_align, - int dest_reg, int dest_offset, + size_t src_offset, int assume_align, + int dest_reg, size_t dest_offset, int dest_size, int dst_aligned) { FMfloat_format src_format = (FMfloat_format) src.src_float_format; @@ -2459,17 +2400,9 @@ gen_mem_float_conv(dill_stream c, struct _FMgetFieldStruct src, int src_addr, } static void -gen_simple_field_conv(c, tmp_spec, assume_align, src_addr, src_offset, - dest_size, dest_type, dest_addr, dest_offset) -dill_stream c; -struct _FMgetFieldStruct tmp_spec; -int assume_align; -dill_reg src_addr; -int src_offset; -int dest_size; -FMdata_type dest_type; -dill_reg dest_addr; -int dest_offset; +gen_simple_field_conv(dill_stream c, struct _FMgetFieldStruct tmp_spec, int assume_align, + dill_reg src_addr, size_t src_offset, int dest_size, + FMdata_type dest_type, dill_reg dest_addr, size_t dest_offset) { /* simple conversion */ iogen_oprnd src_oprnd; @@ -2556,25 +2489,11 @@ int dest_offset; } static void -gen_convert_address_field(c, tmp_spec, assume_align, src_addr, src_offset, - dest_size, dest_addr, dest_offset, string_offset_size, - rt_conv_status, base_size_delta, - string_src_reg, string_dest_reg, register_args, null_target) -dill_stream c; -struct _FMgetFieldStruct tmp_spec; -int assume_align; -dill_reg src_addr; -int src_offset; -int dest_size; -dill_reg dest_addr; -int dest_offset; -int string_offset_size; -dill_reg rt_conv_status; -int base_size_delta; -dill_reg *string_src_reg; -dill_reg *string_dest_reg; -int register_args; -int null_target; +gen_convert_address_field(dill_stream c, struct _FMgetFieldStruct tmp_spec, int assume_align, + dill_reg src_addr, size_t src_offset, size_t dest_size, dill_reg dest_addr, + size_t dest_offset, size_t string_offset_size, dill_reg rt_conv_status, + size_t base_size_delta, dill_reg *string_src_reg, dill_reg *string_dest_reg, + int register_args, int null_target) { iogen_oprnd src_oprnd; int src_drisc_type; @@ -2609,7 +2528,7 @@ int null_target; } #ifdef VERBOSE dill_scallv(c, (void*)printf, "printf", "%P%i%p%I", - "Fetched msgptr %d from address %lx offset %d\n", src_oprnd.vc_reg, + "Fetched msgptr %d from address %p offset %d\n", src_oprnd.vc_reg, src_addr, src_offset); #endif @@ -2654,7 +2573,7 @@ int null_target; iogen_oprnd tmp_oprnd; printf("Doing gen size conversion\n"); tmp_oprnd = gen_size_conversion(c, src_oprnd, - dest_size); + (int)dest_size); free_oprnd(c, src_oprnd); src_oprnd = tmp_oprnd; } @@ -2667,19 +2586,10 @@ int null_target; } static void -generate_convert_field(c, conv_status, src_addr, src_offset, - dest_addr, dest_offset, - rt_conv_status, conv, type_desc, data_already_copied) -dill_stream c; -ConvStatus conv_status; -dill_reg src_addr; -int src_offset; -dill_reg dest_addr; -int dest_offset; -dill_reg rt_conv_status; -IOconvFieldStruct *conv; -FMTypeDesc *type_desc; -int data_already_copied; +generate_convert_field(dill_stream c, ConvStatus conv_status, dill_reg src_addr, + size_t src_offset, dill_reg dest_addr, size_t dest_offset, + dill_reg rt_conv_status, IOconvFieldStruct *conv, FMTypeDesc *type_desc, + int data_already_copied) { switch(type_desc->type) { case FMType_pointer: { @@ -2728,7 +2638,7 @@ int data_already_copied; #ifdef VERBOSE dill_scallv(c, (void*)printf, "printf", "%P%p", - "storing POINTER value %lx\n",actual_dest_reg); + "storing POINTER value %p\n",actual_dest_reg); #endif dill_stpi(c, actual_dest_reg, dest_addr, dest_offset); @@ -2750,7 +2660,7 @@ int data_already_copied; if (!data_already_copied) { #ifdef VERBOSE dill_scallv(c, (void*)printf, "printf", "%P%p%p", - "Calling Strcpy with args %lx, %lx\n",actual_dest_reg, actual_src_reg); + "Calling Strcpy with args %p, %p\n",actual_dest_reg, actual_src_reg); #endif dill_scallv(c, (void*)strcpy, "strcpy", "%p%p", actual_dest_reg, actual_src_reg); @@ -2789,7 +2699,7 @@ int data_already_copied; new_src, new_dest)); if (debug_code_generation()) { /* VCALL2V(printf, "%P%p", - "After subroutine call, new src_string_base is %lx\n", src_string_base);*/ + "After subroutine call, new src_string_base is %p\n", src_string_base);*/ } ffs_putreg(c, new_src, DILL_P); ffs_putreg(c, new_dest, DILL_P); @@ -2905,7 +2815,7 @@ int data_already_copied; next = type_desc; while (next->type == FMType_array) { if (next->static_size == 0) { - dill_reg addr_reg = (dill_reg)(long)conv_status->control_value; + dill_reg addr_reg = (dill_reg)(intptr_t)conv_status->control_value; dill_reg val; int field = next->control_field_index; ffs_getreg(c, &val, DILL_I, DILL_TEMP); @@ -2915,7 +2825,7 @@ int data_already_copied; next = next->next; } if (!data_already_copied) { - int base_delta = decode_size_delta(conv_status, conv, next); + ssize_t base_delta = decode_size_delta(conv_status, conv, next); if (conv_status->global_conv->conversion_type == copy_dynamic_portion) { int base_size = item_size(conv_status, conv, next); dill_reg size; @@ -2923,7 +2833,7 @@ int data_already_copied; dill_mulii(c, size, loop_var, base_size); #ifdef VERBOSE dill_scallv(c, (void*)printf, "printf", "%P%p%p", - "Calling Memcpy with args %lx, %lx, %d\n",dest_addr, src_addr, size); + "Calling Memcpy with args %p, %p, %d\n",dest_addr, src_addr, size); #endif dill_scallv(c, (void*)memcpy, "memcpy", "%p%p%i", dest_addr, src_addr, size); @@ -2935,7 +2845,7 @@ int data_already_copied; dill_mulii(c, delta, loop_var, base_delta); #ifdef VERBOSE dill_scallv(c, (void*)printf, "printf", "%P%p", - "Adjusting dest_pointer_base by %lx\n", delta); + "Adjusting dest_pointer_base by %p\n", delta); #endif dill_ldpi(c, dest_src_ptr, rt_conv_status, FMOffset(RTConvStatus,dest_pointer_base)); dill_addp(c, dest_src_ptr, dest_src_ptr, delta); @@ -2944,7 +2854,7 @@ int data_already_copied; } if (debug_code_generation()) { - dill_scallv(c, (void*)printf, "printf", "%P%S%p", + dill_scallv(c, (void*)printf, "printf", "%P%P%p", "format %s, field Initial loopvar = %x\n", conv_status->global_conv->ioformat->body->format_name, loop_var); } @@ -3022,7 +2932,7 @@ int data_already_copied; if (next->static_size != 0) { dill_seti(c, tmp, next->static_size); } else { - dill_reg addr_reg = (dill_reg)(long)conv_status->control_value; + dill_reg addr_reg = (dill_reg)(intptr_t)conv_status->control_value; int field = next->control_field_index; dill_ldii(c, tmp, addr_reg, field*sizeof(int)); } @@ -3055,13 +2965,8 @@ int data_already_copied; } extern void -new_generate_conversion_code(c, conv_status, conv, args, assume_align, register_args) -dill_stream c; -ConvStatus conv_status; -IOConversionPtr conv; -dill_reg *args; -int assume_align; -int register_args; +new_generate_conversion_code(dill_stream c, ConvStatus conv_status, IOConversionPtr conv, dill_reg *args, + int assume_align, int register_args) { int i; dill_reg src_addr = args[0]; @@ -3114,7 +3019,7 @@ int register_args; #else addr_reg = dill_getreg(c, DILL_P); dill_virtual_lea(c, addr_reg, control_base); - conv_status->control_value = (int*)(long)addr_reg; + conv_status->control_value = (size_t*)(intptr_t)addr_reg; } assert(addr_reg != -1); gen_store(c, src_oprnd, addr_reg, field*sizeof(int), @@ -3129,8 +3034,8 @@ int register_args; FMFieldPtr src_spec = &conv->conversions[i].src_field; FMTypeDesc *type_desc = &conv->conversions[i].iovar->type_desc; int byte_swap = conv->conversions[i].src_field.byte_swap; - int dest_offset = conv->conversions[i].dest_offset; - int src_offset = src_spec->offset; + size_t dest_offset = conv->conversions[i].dest_offset; + size_t src_offset = src_spec->offset; int elements = get_static_array_element_count(conv->conversions[i].iovar); if (conv->conversions[i].src_field.size == 1) byte_swap = 0; diff --git a/ffs/ffs_file.c b/ffs/ffs_file.c index afdda325d1..9fbf77dfff 100644 --- a/ffs/ffs_file.c +++ b/ffs/ffs_file.c @@ -4,16 +4,24 @@ #include "assert.h" #include "atl.h" #include "ffs.h" -#include "fm_internal.h" -#include "ffs_internal.h" -#include "strings.h" +#include "string.h" #include "stdio.h" #include "stdlib.h" +#ifndef _MSC_VER #include "unistd.h" +#include +#else +#include +#include +#endif #include "errno.h" #include "string.h" -#include - +#include "sys/types.h" +#include +#include +#include +#include "fm_internal.h" +#include "ffs_internal.h" #include "io_interface.h" typedef struct _CDLLnode { @@ -218,8 +226,7 @@ static FFSRecordType next_record_type(FFSFile ffsfile); static void update_fpos(FFSFile f) { - int fd = (int)(long)f->file_id; - f->fpos = lseek(fd, 0, SEEK_CUR); + f->fpos = ffs_file_lseek_func(f->file_id, 0, SEEK_CUR); } static void @@ -400,20 +407,20 @@ open_FFSfile(const char *path, const char *flags) parse_flags(flags, &allow_input, &allow_output, &raw, &index); if (allow_input && allow_output) { - file = ffs_file_open_func(path, "a", NULL, NULL); + file = (FFSFile) (ffs_file_open_func)(path, "a", NULL, NULL); if (file == (void*)0) { /* if open for append failed, try creating it */ - file = ffs_file_open_func(path, "w", NULL, NULL); + file = (FFSFile)(ffs_file_open_func)(path, "w", NULL, NULL); } } else if (allow_input) { - file = ffs_file_open_func(path, "r", NULL, NULL); + file = (FFSFile)(ffs_file_open_func)(path, "r", NULL, NULL); } else { - file = ffs_file_open_func(path, "w", NULL, NULL); + file = (FFSFile)(ffs_file_open_func)(path, "w", NULL, NULL); } if (file == NULL) { char msg[128]; - (void) sprintf(msg, "open_FFSfile failed for %s :", path); + (void) snprintf(msg, sizeof(msg), "open_FFSfile failed for %s :", path); perror(msg); return NULL; } @@ -434,15 +441,8 @@ FMContext_of_file(FFSFile f) } extern void -set_interface_FFSFile(f, write_func, read_func, writev_func, readv_func, - max_iov, close_func) -FFSFile f; -IOinterface_func write_func; -IOinterface_func read_func; -IOinterface_funcv writev_func; -IOinterface_funcv readv_func; -int max_iov; -IOinterface_close close_func; +set_interface_FFSFile(FFSFile f, IOinterface_func write_func, IOinterface_func read_func, IOinterface_funcv writev_func, + IOinterface_funcv readv_func, int max_iov, IOinterface_close close_func) { f->write_func = write_func; f->read_func = read_func; @@ -481,10 +481,9 @@ static void init_write_index_block(FFSFile f) { int data_index_start = 0; - int fd = (int)(long)f->file_id; off_t end_of_index; if (f->read_index == NULL) { /* if not append */ - end_of_index = lseek(fd, INDEX_BLOCK_SIZE, SEEK_CUR); + end_of_index = ffs_file_lseek_func(f->file_id, INDEX_BLOCK_SIZE, SEEK_CUR); if (f->cur_index) { data_index_start = f->cur_index->write_info.data_index_end; } else { @@ -512,30 +511,29 @@ static void output_index_end(FFSFile f); static void dump_index_block(FFSFile f) { - int fd = (int)(long)f->file_id; - off_t end = lseek(fd, 0, SEEK_CUR); + off_t end = ffs_file_lseek_func(f->file_id, 0, SEEK_CUR); int ret; - int size = f->cur_index->write_info.index_block_size; + size_t size = f->cur_index->write_info.index_block_size; unsigned char *index_base = f->cur_index->write_info.index_block; output_index_end(f); f->cur_index->write_info.data_index_end = f->data_count-1; - lseek(fd, f->cur_index->write_info.base_file_pos, SEEK_SET); + ffs_file_lseek_func(f->file_id, f->cur_index->write_info.base_file_pos, SEEK_SET); /* * next_data indicator is a 2 4-byte chunks in network byte order. * In the first chunk, * the top byte is 0x4, next three are length of the index block. */ - *((int*)index_base) = htonl((0x4<<24) | size); - *((int*)(index_base+4)) = htonl(end); /* link to next index */ - *((int*)(index_base+8)) = htonl(f->cur_index->write_info.data_index_start); /* data_index_start); */ - *((int*)(index_base+12)) = htonl(f->cur_index->write_info.data_index_end); /* data_index_end); */ + *((int*)index_base) = (int) htonl((0x4<<24) | (long)size); + *((int*)(index_base + 4)) = (int)htonl(end); /* link to next index */ + *((int*)(index_base+8)) = (int)htonl(f->cur_index->write_info.data_index_start); /* data_index_start); */ + *((int*)(index_base+12)) = (int)htonl(f->cur_index->write_info.data_index_end); /* data_index_end); */ ret = f->write_func(f->file_id, index_base, size, NULL, NULL); if (ret != size) { printf("Index write failed errno %d\n", errno); } - lseek(fd, end, SEEK_SET); + ffs_file_lseek_func(f->file_id, end, SEEK_SET); init_write_index_block(f); } @@ -797,7 +795,7 @@ write_comment_FFSfile(FFSFile f, const char *comment) { struct iovec vec[2]; - int byte_size = strlen(comment) + 1; + size_t byte_size = strlen(comment) + 1; int indicator; /* * next_comment indicator is a 4-byte chunk in network byte order. @@ -1057,11 +1055,10 @@ FFSread_index(FFSFile ffsfile) char *index_data; FFSIndexItem index_item; off_t index_fpos; - int index_size; - int fd = (int)(long)ffsfile->file_id; - int currentPos = lseek(fd, (size_t)0, SEEK_CUR); - int end = lseek(fd, (size_t)0, SEEK_END); - lseek(fd, currentPos, SEEK_SET); // seek back to original spot + size_t index_size; + int currentPos = ffs_file_lseek_func(ffsfile->file_id, (size_t)0, SEEK_CUR); + int end = ffs_file_lseek_func(ffsfile->file_id, (size_t)0, SEEK_END); + ffs_file_lseek_func(ffsfile->file_id, currentPos, SEEK_SET); // seek back to original spot if (ffsfile->read_ahead == FALSE) { (void) next_record_type(ffsfile); @@ -1150,8 +1147,7 @@ FFSdump_index(FFSIndexItem index_item) extern FFSTypeHandle -FFSnext_type_handle(ffsfile) -FFSFile ffsfile; +FFSnext_type_handle(FFSFile ffsfile) { if (ffsfile->status != OpenForRead) return NULL; @@ -1169,7 +1165,7 @@ FFSFile ffsfile; return ffsfile->next_data_handle; } -extern long +extern size_t FFSfile_next_decode_length(FFSFile iofile) { FFSContext context = iofile->c; @@ -1181,8 +1177,7 @@ FFSfile_next_decode_length(FFSFile iofile) extern char * -FFSread_comment(ffsfile) -FFSFile ffsfile; +FFSread_comment(FFSFile ffsfile) { if (ffsfile->status != OpenForRead) return NULL; @@ -1208,7 +1203,6 @@ FFSFile ffsfile; static int FFSset_fpos(FFSFile file, off_t fpos) { - int fd = (int)(long)file->file_id; /* dangerous to set FPOS if not indexed, but we'll allow it */ if (file->file_org == Indexed) { /* @@ -1224,7 +1218,7 @@ FFSset_fpos(FFSFile file, off_t fpos) last_element = &file->index_tail->elements[last_element_index]; while(fpos > last_element->fpos) { /* don't skip forward past index blocks without reading them */ - if (lseek(fd, file->index_tail->next_index_offset, SEEK_SET) == -1) + if (ffs_file_lseek_func(file->file_id, file->index_tail->next_index_offset, SEEK_SET) == -1) return 0; file->read_ahead = FALSE; (void) FFSread_index(file); @@ -1233,7 +1227,7 @@ FFSset_fpos(FFSFile file, off_t fpos) last_element = &file->index_tail->elements[last_element_index]; } } - if (lseek(fd, fpos, SEEK_SET) == -1) return 0; + if (ffs_file_lseek_func(file->file_id, fpos, SEEK_SET) == -1) return 0; file->read_ahead = FALSE; return 1; } @@ -1245,7 +1239,6 @@ FFSset_fpos(FFSFile file, off_t fpos) extern int FFSseek(FFSFile file, int data_item) { - int fd = (int)(long)file->file_id; struct _FFSIndexItem *index; off_t fpos; int index_item; @@ -1265,7 +1258,7 @@ FFSseek(FFSFile file, int data_item) while (data_item > file->index_tail->last_data_count && file->index_tail != prev_index_tail) { /* don't skip forward past index blocks without reading them */ - if (lseek(fd, file->index_tail->next_index_offset, SEEK_SET) == -1) + if (ffs_file_lseek_func(file->file_id, file->index_tail->next_index_offset, SEEK_SET) == -1) return 0; file->read_ahead = FALSE; prev_index_tail = file->index_tail; @@ -1299,9 +1292,7 @@ FFSseek(FFSFile file, int data_item) static int -get_AtomicInt(file, file_int_ptr) -FFSFile file; -FILE_INT *file_int_ptr; +get_AtomicInt(FFSFile file, FILE_INT *file_int_ptr) { #if SIZEOF_INT == 4 int tmp_value; @@ -1318,11 +1309,10 @@ FILE_INT *file_int_ptr; static void read_all_index_and_formats(FFSFile file) { - int fd = (int)(long)file->file_id; off_t fpos = 1; - int currentPos = lseek(fd, (size_t)0, SEEK_CUR); - int end = lseek(fd, (size_t)0, SEEK_END); - lseek(fd, currentPos, SEEK_SET); // seek back to original spot + int currentPos = ffs_file_lseek_func(file->file_id, (size_t)0, SEEK_CUR); + int end = ffs_file_lseek_func(file->file_id, (size_t)0, SEEK_END); + ffs_file_lseek_func(file->file_id, currentPos, SEEK_SET); // seek back to original spot if (!file->index_head) FFSread_index(file); @@ -1340,7 +1330,7 @@ read_all_index_and_formats(FFSFile file) for (i = 0; i < file->index_tail->elem_count; i++) { if (file->index_tail->elements[i].type == FFSformat) { fpos = file->index_tail->elements[i].fpos; - if (lseek(fd, fpos, SEEK_SET) == -1) + if (ffs_file_lseek_func(file->file_id, fpos, SEEK_SET) == -1) return; (void) FFSread_format(file); } @@ -1348,13 +1338,13 @@ read_all_index_and_formats(FFSFile file) /* skip to next index block */ fpos = file->index_tail->next_index_offset; if (fpos != end) { - if (lseek(fd, fpos, SEEK_SET) == -1) + if (ffs_file_lseek_func(file->file_id, fpos, SEEK_SET) == -1) return; FFSread_index(file); } } - lseek(fd, 0, SEEK_END); - file->fpos = lseek(fd, 0, SEEK_CUR); + ffs_file_lseek_func(file->file_id, 0, SEEK_END); + file->fpos = ffs_file_lseek_func(file->file_id, 0, SEEK_CUR); } static void @@ -1382,14 +1372,12 @@ convert_last_index_block(FFSFile ffsfile) } ffsfile->cur_index->write_info.data_index_start = htonl(*((int*)(index_data+8)));; ffsfile->data_count = read_index->last_data_count + 1; - int fd = (int)(long)ffsfile->file_id; - if (lseek(fd, 0, SEEK_END) == -1) + if (ffs_file_lseek_func(ffsfile->file_id, 0, SEEK_END) == -1) return; } FFSRecordType -FFSnext_record_type(ffsfile) -FFSFile ffsfile; +FFSnext_record_type(FFSFile ffsfile) { FFSRecordType next = next_record_type(ffsfile); while ((next & ffsfile->visible_items_bitmap) != next) { @@ -1408,8 +1396,7 @@ FFSset_visible(FFSFile ffsfile, int bitmap) static FFSRecordType -next_record_type(ffsfile) -FFSFile ffsfile; +next_record_type(FFSFile ffsfile) { FILE_INT indicator_chunk = 0; restart: @@ -1479,11 +1466,10 @@ FFSFile ffsfile; if (!ffsfile->next_actual_handle && ffsfile->index_head) { struct _FFSIndexItem *index = NULL; - int fd = (int)(long)ffsfile->file_id; - off_t fpos_bak = lseek(fd, 0, SEEK_CUR); + off_t fpos_bak = ffs_file_lseek_func(ffsfile->file_id, 0, SEEK_CUR); int fid_len = ffsfile->next_fid_len; char tmp_fid_storage[64]; - int tmp_data_len; + size_t tmp_data_len; int done = 0; assert(sizeof(tmp_fid_storage) > fid_len); /* store away the format ID we've read */ @@ -1501,10 +1487,10 @@ FFSFile ffsfile; !(memcmp(elem->format_id, tmp_buf, ffsfile->next_fid_len))) { - if (lseek(fd, elem->fpos, SEEK_SET) != -1) { + if (ffs_file_lseek_func(ffsfile->file_id, elem->fpos, SEEK_SET) != -1) { ffsfile->read_ahead = FALSE; FFSread_format(ffsfile); - lseek(fd, fpos_bak, SEEK_SET); + ffs_file_lseek_func(ffsfile->file_id, fpos_bak, SEEK_SET); ffsfile->read_ahead = TRUE; ffsfile->next_record_type = FFSdata; /* tmp_buf might have changed */ @@ -1545,7 +1531,7 @@ FFSFile ffsfile; if ((ffsfile->next_data_handle == NULL) && (!ffsfile->raw_flag)) { /* no target for this format, discard */ - int more = ffsfile->next_data_len - ffsfile->next_fid_len; + size_t more = ffsfile->next_data_len - ffsfile->next_fid_len; if (ffsfile->read_func(ffsfile->file_id, tmp_buf + ffsfile->next_fid_len, more, NULL, NULL) != more) { @@ -1574,7 +1560,7 @@ FFSFile ffsfile; ffsfile->next_record_type = FFSindex; ffsfile->next_data_len = indicator_chunk & 0xffffff; /* if (!ffsfile->expose_index) { - lseek((int)(long)ffsfile->file_id, INDEX_BLOCK_SIZE-4, SEEK_CUR); + ffs_file_lseek_func((int)(intptr_t)ffsfile->file_id, INDEX_BLOCK_SIZE-4, SEEK_CUR); ffsfile->read_ahead = FALSE; return next_record_type(ffsfile); }*/ @@ -1589,7 +1575,7 @@ FFSFile ffsfile; return ffsfile->next_record_type; } -extern long +extern size_t FFSnext_data_length(FFSFile file) { if (file->status != OpenForRead) @@ -1608,7 +1594,7 @@ extern int FFSread(FFSFile file, void *dest) { int header_size; - int read_size; + size_t read_size; char *tmp_buf; if (file->status != OpenForRead) @@ -1701,7 +1687,7 @@ FFSread_raw(FFSFile file, void *dest, int buffer_size, FFSTypeHandle *fp) { FFSTypeHandle f; int header_size; - int read_size; + size_t read_size; if (file->status != OpenForRead) return 0; @@ -1732,7 +1718,7 @@ FFSread_raw_header(FFSFile file, void *dest, int buffer_size, FFSTypeHandle *fp) { FFSTypeHandle f; int header_size; - int read_size; + size_t read_size; if (file->status != OpenForRead) return 0; @@ -1767,7 +1753,7 @@ extern int FFSread_to_buffer(FFSFile file, FFSBuffer b, void **dest) { int header_size; - int read_size; + size_t read_size; char *tmp_buf; if (file->status != OpenForRead) diff --git a/ffs/ffs_formats.c b/ffs/ffs_formats.c index 03e98061ac..198f14a60d 100644 --- a/ffs/ffs_formats.c +++ b/ffs/ffs_formats.c @@ -13,7 +13,9 @@ #endif #include #include -extern char *getenv(const char *name); +#ifdef HAVE_STDLIB_H +#include +#endif #ifdef DO_DCG #include "dill.h" @@ -115,8 +117,7 @@ local_size(int field_index, FMFormat f, FMTypeDesc *type, } static int -min_align_size(size) -int size; +min_align_size(int size) { int align_size = 8; /* conservative on current machines */ switch (size) { @@ -138,9 +139,7 @@ int size; } static int -min_align_type(typ, size) -FMdata_type typ; -int size; +min_align_type(FMdata_type typ, int size) { #ifndef DO_DCG return min_align_size(size); diff --git a/ffs/ffs_gen.c b/ffs/ffs_gen.c index a8ea77e398..de770a2a13 100755 --- a/ffs/ffs_gen.c +++ b/ffs/ffs_gen.c @@ -20,13 +20,7 @@ #define gen_fatal(str) do {fprintf(stderr, "%s\n", str); exit(0);} while (0) iogen_oprnd -gen_operand(src_reg, offset, size, data_type, aligned, byte_swap) -dill_reg src_reg; -int offset; -int size; -FMdata_type data_type; -int aligned; -int byte_swap; +gen_operand(dill_reg src_reg, size_t offset, int size, FMdata_type data_type, int aligned, int byte_swap) { iogen_oprnd ret_val; ret_val.address = 1; @@ -41,9 +35,7 @@ int byte_swap; } void -gen_load(c, src_oprnd) -dill_stream c; -iogen_oprnd_ptr src_oprnd; +gen_load(dill_stream c, iogen_oprnd_ptr src_oprnd) { iogen_oprnd tmp_val; tmp_val = gen_fetch(c, @@ -54,13 +46,8 @@ iogen_oprnd_ptr src_oprnd; } iogen_oprnd -gen_bswap_fetch(c, src_reg, offset, size, data_type, aligned) -dill_stream c; -dill_reg src_reg; -int offset; -int size; -FMdata_type data_type; -int aligned; +gen_bswap_fetch(dill_stream c, dill_reg src_reg, size_t offset, + int size, FMdata_type data_type, int aligned) { iogen_oprnd ret_val; ret_val.address = 0; @@ -95,8 +82,8 @@ int aligned; REG_DEBUG(("get %d in gen_Fetch\n", _vrr(ret_val.vc_reg))); dill_ldbsii(c, ret_val.vc_reg, src_reg, offset); break; -#if SIZEOF_LONG != 4 - case SIZEOF_LONG: +#if SIZEOF_SIZE_T != 4 + case SIZEOF_SIZE_T: if (!ffs_getreg(c, &ret_val.vc_reg, DILL_L, DILL_TEMP)) gen_fatal("gen fetch out of registers \n"); REG_DEBUG(("get %d in gen_Fetch\n", _vrr(ret_val.vc_reg))); @@ -167,8 +154,8 @@ int aligned; REG_DEBUG(("get %d in gen_Fetch\n", _vrr(ret_val.vc_reg))); dill_ldbsui(c, ret_val.vc_reg, src_reg, offset); break; -#if SIZEOF_LONG != 4 - case SIZEOF_LONG: +#if SIZEOF_SIZE_T != 4 + case SIZEOF_SIZE_T: if (!ffs_getreg(c, &ret_val.vc_reg, DILL_UL, DILL_TEMP)) gen_fatal("gen fetch out of registers \n"); REG_DEBUG(("get %d in gen_Fetch\n", _vrr(ret_val.vc_reg))); @@ -231,8 +218,8 @@ gen_set(dill_stream c, int size, char* value) REG_DEBUG(("get %d in gen_Fetch\n", _vrr(ret_val.vc_reg))); dill_seti(c, ret_val.vc_reg, *((int*)value)); break; -#if SIZEOF_LONG != 4 - case SIZEOF_LONG: +#if SIZEOF_SIZE_T != 4 + case SIZEOF_SIZE_T: if (!ffs_getreg(c, &ret_val.vc_reg, DILL_L, DILL_TEMP)) gen_fatal("gen fetch out of registers \n"); REG_DEBUG(("get %d in gen_Fetch\n", _vrr(ret_val.vc_reg))); @@ -261,14 +248,8 @@ gen_set(dill_stream c, int size, char* value) } iogen_oprnd -gen_fetch(c, src_reg, offset, size, data_type, aligned, byte_swap) -dill_stream c; -dill_reg src_reg; -int offset; -int size; -FMdata_type data_type; -int aligned; -int byte_swap; +gen_fetch(dill_stream c, dill_reg src_reg, size_t offset, size_t size, + FMdata_type data_type, int aligned, int byte_swap) { iogen_oprnd ret_val; @@ -276,13 +257,13 @@ int byte_swap; if (dill_has_ldbs(c)) { /* have byte swap load extension */ if (byte_swap && (data_type != float_type)) { - return gen_bswap_fetch(c, src_reg, offset, size, data_type, + return gen_bswap_fetch(c, src_reg, offset, (int)size, data_type, aligned); } } #endif ret_val.address = 0; - ret_val.size = size; + ret_val.size = (int)size; ret_val.data_type = data_type; ret_val.offset = 0; ret_val.aligned = 0; @@ -313,8 +294,8 @@ int byte_swap; REG_DEBUG(("get %d in gen_Fetch\n", _vrr(ret_val.vc_reg))); dill_ldii(c, ret_val.vc_reg, src_reg, offset); break; -#if SIZEOF_LONG != 4 - case SIZEOF_LONG: +#if SIZEOF_SIZE_T != 4 + case SIZEOF_SIZE_T: if (!ffs_getreg(c, &ret_val.vc_reg, DILL_L, DILL_TEMP)) gen_fatal("gen fetch out of registers \n"); REG_DEBUG(("get %d in gen_Fetch\n", _vrr(ret_val.vc_reg))); @@ -361,8 +342,8 @@ int byte_swap; REG_DEBUG(("get %d in gen_Fetch\n", _vrr(ret_val.vc_reg))); dill_ldui(c, ret_val.vc_reg, src_reg, offset); break; -#if SIZEOF_LONG != 4 - case SIZEOF_LONG: +#if SIZEOF_SIZE_T != 4 + case SIZEOF_SIZE_T: if (!ffs_getreg(c, &ret_val.vc_reg, DILL_UL, DILL_TEMP)) gen_fatal("gen fetch out of registers \n"); REG_DEBUG(("get %d in gen_Fetch\n", _vrr(ret_val.vc_reg))); @@ -423,9 +404,7 @@ int byte_swap; } void -gen_byte_swap(c, src_oprnd) -dill_stream c; -iogen_oprnd_ptr src_oprnd; +gen_byte_swap(dill_stream c, iogen_oprnd_ptr src_oprnd) { iogen_oprnd swap_oprnd; if (src_oprnd->address) { @@ -460,7 +439,7 @@ iogen_oprnd_ptr src_oprnd; dill_bswapi(c, swap_oprnd.vc_reg, swap_oprnd.vc_reg); break; case 8: - if (sizeof(long) == 4) { + if (sizeof(size_t) == 4) { /* swap top and bottom */ dill_reg tmp_reg = swap_oprnd.vc_reg; swap_oprnd.vc_reg = swap_oprnd.vc_reg2; @@ -491,14 +470,8 @@ iogen_oprnd_ptr src_oprnd; } void -gen_store(c, src, dest_reg, offset, size, data_type, aligned) -dill_stream c; -iogen_oprnd src; -dill_reg dest_reg; -int offset; -int size; -FMdata_type data_type; -int aligned; +gen_store(dill_stream c, iogen_oprnd src, dill_reg dest_reg, ssize_t offset, + int size, FMdata_type data_type, int aligned) { assert(src.size == size); @@ -519,8 +492,8 @@ int aligned; case 4: /* sizeof int */ dill_stii(c, src.vc_reg, dest_reg, offset); break; -#if SIZEOF_LONG != 4 - case SIZEOF_LONG: +#if SIZEOF_SIZE_T != 4 + case SIZEOF_SIZE_T: dill_stli(c, src.vc_reg, dest_reg, offset); break; #else @@ -550,8 +523,8 @@ int aligned; case 4: /* sizeof int */ dill_stui(c, src.vc_reg, dest_reg, offset); break; -#if SIZEOF_LONG != 4 - case SIZEOF_LONG: +#if SIZEOF_SIZE_T != 4 + case SIZEOF_SIZE_T: dill_stuli(c, src.vc_reg, dest_reg, offset); break; #else @@ -586,14 +559,8 @@ int aligned; } void -gen_memcpy(c, src, src_offset, dest, dest_offset, size, const_size) -dill_stream c; -dill_reg src; -int src_offset; -dill_reg dest; -int dest_offset; -dill_reg size; -int const_size; +gen_memcpy(dill_stream c, dill_reg src, size_t src_offset, dill_reg dest, + size_t dest_offset, dill_reg size, int const_size) { dill_reg final_src, final_dest; if (src_offset != 0) { @@ -625,9 +592,7 @@ int const_size; } void -free_oprnd(c, oprnd) -dill_stream c; -iogen_oprnd oprnd; +free_oprnd(dill_stream c, iogen_oprnd oprnd) { REG_DEBUG(("put %d in free\n", _vrr(oprnd.vc_reg))); switch (oprnd.data_type) { @@ -647,8 +612,8 @@ iogen_oprnd oprnd; case 4: /* sizeof int */ ffs_putreg(c, oprnd.vc_reg, DILL_I); break; -#if SIZEOF_LONG != 4 - case SIZEOF_LONG: +#if SIZEOF_SIZE_T != 4 + case SIZEOF_SIZE_T: ffs_putreg(c, oprnd.vc_reg, DILL_L); break; #else @@ -673,8 +638,8 @@ iogen_oprnd oprnd; case 4: /* sizeof int */ ffs_putreg(c, oprnd.vc_reg, DILL_U); break; -#if SIZEOF_LONG != 4 - case SIZEOF_LONG: +#if SIZEOF_SIZE_T != 4 + case SIZEOF_SIZE_T: ffs_putreg(c, oprnd.vc_reg, DILL_UL); break; #else @@ -704,10 +669,7 @@ iogen_oprnd oprnd; } iogen_oprnd -gen_type_conversion(c, src_oprnd, data_type) -dill_stream c; -iogen_oprnd src_oprnd; -FMdata_type data_type; +gen_type_conversion(dill_stream c, iogen_oprnd src_oprnd, FMdata_type data_type) { iogen_oprnd result_oprnd = src_oprnd; dill_reg at; /* temporary */ @@ -718,7 +680,7 @@ FMdata_type data_type; assert(FALSE); break; case integer_type: - result_oprnd.size = sizeof(long); + result_oprnd.size = sizeof(size_t); if (!ffs_getreg(c, &result_oprnd.vc_reg, DILL_L, DILL_TEMP)) gen_fatal("gen type convert out of registers \n"); REG_DEBUG(("get %d in type_convert\n", _vrr(result_oprnd.vc_reg))); @@ -742,7 +704,7 @@ FMdata_type data_type; dill_cvu2l(c, result_oprnd.vc_reg, src_oprnd.vc_reg); break; case 8: -#if SIZEOF_LONG == 8 +#if SIZEOF_SIZE_T == 8 dill_cvul2l(c, result_oprnd.vc_reg, src_oprnd.vc_reg); #else result_oprnd.size = 8; @@ -799,7 +761,7 @@ FMdata_type data_type; dill_cvi2ul(c, result_oprnd.vc_reg, src_oprnd.vc_reg); break; case 8: -#if SIZEOF_LONG == 8 +#if SIZEOF_SIZE_T == 8 dill_cvl2ul(c, result_oprnd.vc_reg, src_oprnd.vc_reg); #else result_oprnd.size = 8; @@ -861,7 +823,7 @@ FMdata_type data_type; ffs_putreg(c, at, DILL_L); break; case 8: -#if SIZEOF_LONG == 8 +#if SIZEOF_SIZE_T == 8 dill_cvl2d(c, result_oprnd.vc_reg, src_oprnd.vc_reg); #else { @@ -900,7 +862,7 @@ FMdata_type data_type; dill_cvi2d(c, result_oprnd.vc_reg, src_oprnd.vc_reg); break; case 8: -#if SIZEOF_LONG == 8 +#if SIZEOF_SIZE_T == 8 dill_cvl2d(c, result_oprnd.vc_reg, src_oprnd.vc_reg); #else { @@ -936,10 +898,7 @@ FMdata_type data_type; } iogen_oprnd -gen_size_conversion(c, src_oprnd, size) -dill_stream c; -iogen_oprnd src_oprnd; -int size; +gen_size_conversion(dill_stream c, iogen_oprnd src_oprnd, int size) { iogen_oprnd result_oprnd = src_oprnd; dill_reg at; /* temporary */ @@ -1001,7 +960,7 @@ int size; } break; case 8: -#if SIZEOF_LONG == 8 +#if SIZEOF_SIZE_T == 8 if (!ffs_getreg(c, &result_oprnd.vc_reg, DILL_L, DILL_TEMP)) gen_fatal("gen size convert out of registers \n"); REG_DEBUG(("get %d in size convert\n", _vrr(result_oprnd.vc_reg))); @@ -1099,7 +1058,7 @@ int size; } break; case 8: -#if SIZEOF_LONG == 8 +#if SIZEOF_SIZE_T == 8 if (!ffs_getreg(c, &result_oprnd.vc_reg, DILL_UL, DILL_TEMP)) gen_fatal("gen size convert out of registers \n"); REG_DEBUG(("get %d in size convert\n", _vrr(result_oprnd.vc_reg))); diff --git a/ffs/ffs_gen.h b/ffs/ffs_gen.h index 623fdfeebb..35356b53d1 100755 --- a/ffs/ffs_gen.h +++ b/ffs/ffs_gen.h @@ -2,7 +2,7 @@ typedef struct { int address; /* if TRUE, reg contains the *address* of the data */ FMdata_type data_type; int size; - int offset; + size_t offset; int aligned; int byte_swap; dill_reg vc_reg; @@ -13,11 +13,11 @@ iogen_oprnd gen_set(dill_stream c, int size, char*value); iogen_oprnd -gen_fetch(dill_stream c, dill_reg src_reg, int offset, int size, +gen_fetch(dill_stream c, dill_reg src_reg, size_t offset, size_t size, FMdata_type data_type, int aligned, int byte_swap); iogen_oprnd -gen_operand(dill_reg src_reg, int offset, int size, +gen_operand(dill_reg src_reg, size_t offset, int size, FMdata_type data_type, int aligned, int byte_swap); void @@ -28,12 +28,12 @@ gen_byte_swap(dill_stream c, iogen_oprnd_ptr src_oprnd); void gen_store(dill_stream c, - iogen_oprnd src, dill_reg dest_reg, int offset, int size, + iogen_oprnd src, dill_reg dest_reg, ssize_t offset, int size, FMdata_type data_type, int aligned); void -gen_memcpy(dill_stream c, dill_reg src, int src_offset, dill_reg dest, - int dest_offset, dill_reg size, int const_size); +gen_memcpy(dill_stream c, dill_reg src, size_t src_offset, dill_reg dest, + size_t dest_offset, dill_reg size, int const_size); void free_oprnd(dill_stream c, iogen_oprnd oprnd); diff --git a/ffs/ffs_internal.h b/ffs/ffs_internal.h index 1a24efb58f..f4e07c7467 100755 --- a/ffs/ffs_internal.h +++ b/ffs/ffs_internal.h @@ -1,5 +1,6 @@ #ifndef FFS_INTERNAL_H #include "../fm/fm.h" +#include "../fm/fm_internal.h" #define MAGIC_NUMBER 0x4356ffa9 /* random magic */ #define REVERSE_MAGIC_NUMBER 0xa9ff5643 /* byte reversed random @@ -25,10 +26,17 @@ extern short bswap_16(short s); extern int bswap_32(int l); #endif +#if defined(_MSC_VER) && !defined(strdup) +#define strdup _strdup +#include +typedef SSIZE_T ssize_t; +#define strncpy(to, from, len) strcpy_s(to, len, from) +#endif + struct _FFSBuffer { void *tmp_buffer; - long tmp_buffer_size; - long tmp_buffer_in_use_size; + ssize_t tmp_buffer_size; + ssize_t tmp_buffer_in_use_size; }; typedef struct _internal_iovec { @@ -67,7 +75,7 @@ struct _FFSTypeHandle { struct _IOgetFieldStruct { int offset; - int size; + size_t size; FMdata_type data_type; unsigned char byte_swap; unsigned char src_float_format; @@ -85,7 +93,7 @@ typedef enum { typedef struct _IOconvFieldStruct { struct _FMgetFieldStruct src_field; FMVarInfoStruct *iovar; - int dest_offset; + ssize_t dest_offset; int dest_size; void *default_value; row_column_swap_type rc_swap; @@ -99,7 +107,7 @@ typedef struct _IOConversionStruct { int notify_of_format_change; FMFieldList native_field_list; int conv_count; - int base_size_delta; /* native size - file record length */ + size_t base_size_delta; /* native size - file record length */ double max_var_expansion; int target_pointer_size; FFSContext context; @@ -112,7 +120,7 @@ typedef struct _IOConversionStruct { conv_routine conv_func2; conv_routine conv_func1; int required_alignment; - int string_offset_size; + size_t string_offset_size; int converted_strings; IOconvFieldStruct conversions[1]; } IOConversionStruct; @@ -191,9 +199,9 @@ extern char * make_tmp_buffer(FFSBuffer buf, int64_t size); -extern int +extern size_t FFS_decode_length_format(FFSContext context, FFSTypeHandle ioformat, - long record_length); + size_t record_length); extern void FFS_determine_conversion(FFSContext c, FFSTypeHandle format); diff --git a/ffs/ffs_marshal.c b/ffs/ffs_marshal.c index d8366236ef..feca64b7c7 100644 --- a/ffs/ffs_marshal.c +++ b/ffs/ffs_marshal.c @@ -95,9 +95,9 @@ install_drop_code(FMFormat f, char *field, char*code_str) * some compilers think it isn't a static initialization to put this * in the structure above, so do it explicitly. */ - externs[0].extern_value = (void *) (long) printf; - externs[1].extern_value = (void *) (long) malloc; - externs[2].extern_value = (void *) (long) free; + externs[0].extern_value = (void *) (intptr_t) printf; + externs[1].extern_value = (void *) (intptr_t) malloc; + externs[2].extern_value = (void *) (intptr_t) free; for (i=0; i< f->field_count; i++) { @@ -169,10 +169,10 @@ install_subsample_code(FMFormat f, char *field, char*code_str) * some compilers think it isn't a static initialization to put this * in the structure above, so do it explicitly. */ - externs[0].extern_value = (void *) (long) printf; - externs[1].extern_value = (void *) (long) malloc; - externs[2].extern_value = (void *) (long) memcpy; - externs[3].extern_value = (void *) (long) copy_array_element; + externs[0].extern_value = (void *) (intptr_t) printf; + externs[1].extern_value = (void *) (intptr_t) malloc; + externs[2].extern_value = (void *) (intptr_t) memcpy; + externs[3].extern_value = (void *) (intptr_t) copy_array_element; for (i=0; i< f->field_count; i++) { diff --git a/ffs/ffs_marshal.h b/ffs/ffs_marshal.h index 1f0bc0ced3..218fdea4e2 100644 --- a/ffs/ffs_marshal.h +++ b/ffs/ffs_marshal.h @@ -22,7 +22,7 @@ get_marshal_info(FMFormat f, FMTypeDesc *t); struct subsample_marshal_data { int element_count; - int element_size; + size_t element_size; void *src_ptr; void *dst_ptr; int marshalled_count; diff --git a/ffs/nt_io.c b/ffs/nt_io.c deleted file mode 100755 index abb6e5e763..0000000000 --- a/ffs/nt_io.c +++ /dev/null @@ -1,352 +0,0 @@ -#include "config.h" -#include -#ifdef HAVE_SYS_UIO_H -#include -#endif -#define FD_SETSIZE 1024 -#include -#include -#include -#include "ffs.h" -#include "io_interface.h" -#include "ffs_internal.h" - -static int -nt_file_read_func(conn, buffer, length, errno_p, result_p) -void *conn; -void *buffer; -int length; -int *errno_p; -char **result_p; -{ - int left = length; - DWORD iget; - BOOL bResult; - bResult = ReadFile(conn, (char *) buffer, length, &iget, NULL); - - if (iget == 0) { - *result_p = "End of file"; - *errno_p = 0; - return 0; /* end of file */ - } else { - if (!bResult) { - *errno_p = GetLastError(); - if ((*errno_p != WSAEWOULDBLOCK) && - (*errno_p != WSAEINPROGRESS) && - (*errno_p != WSAEINTR)) { - /* serious error */ - return -1; - } else { - *errno_p = 0; - iget = 0; - } - } - } - - left = length - iget; - while (left > 0) { - bResult = ReadFile((HANDLE) conn, (char *) buffer + length - left, - left, &iget, NULL); - if (iget == 0) { - *result_p = "End of file"; - *errno_p = 0; - return length - left; /* end of file */ - } else { - if (!bResult) { - *errno_p = GetLastError(); - if ((*errno_p != WSAEWOULDBLOCK) && - (*errno_p != WSAEINPROGRESS) && - (*errno_p != WSAEINTR)) { - /* serious error */ - return (length - left); - } else { - *errno_p = 0; - iget = 0; - } - } - } - left -= iget; - } - return length; -} - -static int -nt_socket_read_func(conn, buffer, length, errno_p, result_p) -void *conn; -void *buffer; -int length; -int *errno_p; -char **result_p; -{ - int left = length; - int iget; - iget = recv((unsigned int) conn, (char *) buffer + length - left, left, 0); - if (iget == 0) { - *result_p = NULL; - *errno_p = 0; - return 0; /* No more socket data */ - } else if (iget == SOCKET_ERROR) { - *errno_p = WSAGetLastError(); - if ((*errno_p != WSAEWOULDBLOCK) && - (*errno_p != WSAEINPROGRESS) && - (*errno_p != WSAECONNRESET) && - (*errno_p != WSAEINTR)) { - /* serious error */ - fprintf(stderr, "WINSOCK ERROR during receive, %i on socket %i\n", - *errno_p, conn); - return -1; - } else { - if (*errno_p == WSAECONNRESET) - return -1; - *errno_p = 0; - iget = 0; - } - } - left = length - iget; - while (left > 0) { - iget = recv((unsigned int) conn, (char *) buffer + length - left, - left, 0); - if (iget == 0) { - *result_p = NULL; - *errno_p = 0; - return length - left; /* no more socket data */ - } else { - if (iget == SOCKET_ERROR) { - *errno_p = WSAGetLastError(); - if ((*errno_p != WSAEWOULDBLOCK) && - (*errno_p != WSAEINPROGRESS) && - (*errno_p != WSAECONNRESET) && - (*errno_p != WSAEINTR)) { - - /* serious error */ - fprintf(stderr, "WINSOCK ERROR during receive2, %i on socket %i\n", - *errno_p, conn); - return (length - left); - } else { - if (*errno_p == WSAECONNRESET) - return -1; - *errno_p = 0; - iget = 0; - } - } - } - left -= iget; - } - - return length; -} - - -static int -nt_file_write_func(conn, buffer, length, errno_p, result_p) -void *conn; -void *buffer; -int length; -int *errno_p; -char **result_p; -{ - int left = length; - int iget = 0; - BOOL bResult; - - while (left > 0) { - bResult = WriteFile((HANDLE) conn, (char *) buffer + length - left, - left, &iget, NULL); - if (!bResult) { - *errno_p = GetLastError(); - if ((*errno_p != WSAEWOULDBLOCK) && - (*errno_p != WSAEINPROGRESS) && - (*errno_p != WSAEINTR)) { - /* serious error */ - return (length - left); - } else { - *errno_p = 0; - iget = 0; - } - } - left -= iget; - } - return length; -} - - -static int -nt_socket_write_func(conn, buffer, length, errno_p, result_p) -void *conn; -void *buffer; -int length; -int *errno_p; -char **result_p; -{ - int left = length; - int iget = 0; - - while (left > 0) { - iget = send((unsigned int) conn, (char *) buffer + length - left, - left, 0); - if (iget == SOCKET_ERROR) { - *errno_p = GetLastError(); - if ((*errno_p != WSAEWOULDBLOCK) && - (*errno_p != WSAEINPROGRESS) && - (*errno_p != WSAEINTR)) { - /* serious error */ - return (length - left); - } else { - *errno_p = 0; - iget = 0; - } - } - left -= iget; - } - return length; -} - - -static int -nt_close_func(conn) -void *conn; -{ - DWORD status; - /* make sure handle exists before we close it. *otherwise -- an * * * - * access error occurs */ - if (GetHandleInformation(conn, &status)) { - CloseHandle((HANDLE) conn); - return 1; - } - return 0; -} - -static void * -nt_file_open_func(path, flag_str) -const char *path; -const char *flag_str; -{ - - void *file; - long tmp_flags = (long)flag_str; - tmp_flags &= ~(O_TRUNC); - tmp_flags &= ~(O_CREAT); - int input = TRUE; - - if (strcmp(flag_str, "r") == 0) { - input = TRUE; - } else if (strcmp(flag_str, "w") == 0) { - input = FALSE; - } else { - fprintf(stderr, "Open flags value not understood for file \"%s\"\n", - path); - return NULL; - } - - if (input) { - file = CreateFile(path, GENERIC_READ, FILE_SHARE_READ, - NULL, OPEN_EXISTING, FILE_ATTRIBUTE_ARCHIVE, NULL); - - } else { - file = CreateFile(path, GENERIC_WRITE, FILE_SHARE_READ, - NULL, CREATE_ALWAYS, FILE_ATTRIBUTE_ARCHIVE, NULL); - } - if (file == INVALID_HANDLE_VALUE) { - return NULL; - } else { - return file; - } -} - - -static int -nt_socket_readv_func(conn, iov, icount, errno_p, result_p) -void *conn; -struct iovec *iov; -int icount; -int *errno_p; -char **result_p; -{ - - int i = 0; - for (; i < icount; i++) { - if (nt_socket_read_func(conn, iov[i].iov_base, iov[i].iov_len, - errno_p, result_p) != iov[i].iov_len) { - return i; - } - } - return icount; -} - - -static int -null_file_readv_func(conn, iov, icount, errno_p, result_p) -void *conn; -struct iovec *iov; -int icount; -int *errno_p; -char **result_p; -{ - - int i = 0; - for (; i < icount; i++) { - if (nt_file_read_func(conn, iov[i].iov_base, iov[i].iov_len, errno_p, - result_p) != iov[i].iov_len) { - return i; - } - } - return icount; -} - - -/* Winsock init stuff, ask for ver 1.1 */ -static WORD wVersionRequested = MAKEWORD(1, 1); -static WSADATA wsaData; - -static void -nt_socket_init_func() -{ - int nErrorStatus; - nErrorStatus = WSAStartup(wVersionRequested, &wsaData); - if (nErrorStatus != 0) { - fprintf(stderr, "Could not initialize windows socket library!"); - WSACleanup(); - exit(-1); - } -} - - -static int -nt_poll_func(conn) -void *conn; -{ - int fd = (int) (long) conn; - struct timeval time; - fd_set read_fds; - int ret_val; - - time.tv_sec = time.tv_usec = 0; - FD_ZERO(&read_fds); - FD_SET(fd, &read_fds); - if (fd > FD_SETSIZE) { - fprintf(stderr, "Internal Error, stupid WINSOCK large FD bug.\n"); - fprintf(stderr, "Increase FD_SETSIZE. Item not added to fdset.\n"); - } - ret_val = select(FD_SETSIZE, &read_fds, NULL, NULL, &time); - return (ret_val > 0); -} - -IOinterface_func ffs_file_read_func = (IOinterface_func)nt_file_read_func; -IOinterface_func ffs_file_write_func = (IOinterface_func)nt_file_write_func; -IOinterface_funcv ffs_file_readv_func = (IOinterface_funcv)null_file_readv_func; -IOinterface_funcv ffs_file_writev_func = NULL; - - -IOinterface_func ffs_read_func = (IOinterface_func)nt_socket_read_func; -IOinterface_func ffs_write_func = (IOinterface_func)nt_socket_write_func; -IOinterface_funcv ffs_readv_func = (IOinterface_funcv)nt_socket_readv_func; -IOinterface_funcv ffs_writev_func = NULL; -int ffs_max_iov = 1; - - -IOinterface_open ffs_file_open_func = (IOinterface_open)nt_file_open_func; -IOinterface_close ffs_close_func = (IOinterface_close) nt_close_func; -IOinterface_poll ffs_poll_func = (IOinterface_poll)nt_poll_func; -IOinterface_func ffs_server_read_func = (IOinterface_func)nt_socket_read_func; -IOinterface_func ffs_server_write_func = (IOinterface_func)nt_socket_write_func; -IOinterface_init ffs_sockets_init_func = (IOinterface_init)nt_socket_init_func; diff --git a/ffs/progs/FFScp.c b/ffs/progs/FFScp.c index 9f2cf454da..e2a747e818 100644 --- a/ffs/progs/FFScp.c +++ b/ffs/progs/FFScp.c @@ -23,9 +23,7 @@ write_encoded_FFSfile(FFSFile f, void *data, DATA_LEN_TYPE byte_size, FFSContext attr_list attrs); int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { FFSFile in_file = NULL, out_file = NULL; int buffer_size = 1024; diff --git a/ffs/progs/FFSdump.c b/ffs/progs/FFSdump.c index d6644983a0..cdb3c53c1e 100644 --- a/ffs/progs/FFSdump.c +++ b/ffs/progs/FFSdump.c @@ -30,9 +30,7 @@ extern char * dump_raw_FMrecord_to_string(FMContext fmc, FMFormat format, void *data); int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { FFSFile ffsfile = NULL; int buffer_size = 1024; diff --git a/ffs/progs/FFSsort.c b/ffs/progs/FFSsort.c index e42bf32362..4184d73c71 100755 --- a/ffs/progs/FFSsort.c +++ b/ffs/progs/FFSsort.c @@ -260,9 +260,7 @@ typedef enum { #define combine(a,b) ((int)(a) * 10 + (int)(b)) int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { FFSFile in_file = NULL, out_file = NULL; int buffer_size = 1024; diff --git a/ffs/tests/adios2_bug.c b/ffs/tests/adios2_bug.c index 91c0588351..9f6aa698e3 100644 --- a/ffs/tests/adios2_bug.c +++ b/ffs/tests/adios2_bug.c @@ -532,7 +532,7 @@ void *CP_distributeDataFromRankZero(FFSContext ffs_c, void *root_info, FFSContext context = ffs_c; // FFSTypeHandle ffs_type = FFSTypeHandle_from_encode(context, Buffer); - if (verbose) printf("BUFFER IS AT %p, DataSize is %ld (0x%lx), End is %p\n", Buffer, DataSize, DataSize, Buffer+DataSize); + if (verbose) printf("BUFFER IS AT %p, DataSize is %zu (0x%zx), End is %p\n", Buffer, DataSize, DataSize, Buffer+DataSize); FFSdecode_in_place(context, Buffer, &RetVal); if (verbose) { diff --git a/ffs/tests/context_test.c b/ffs/tests/context_test.c index 0654823a80..19af8d4442 100755 --- a/ffs/tests/context_test.c +++ b/ffs/tests/context_test.c @@ -8,26 +8,34 @@ #ifdef HAVE_UNISTD_H #include #endif +#ifdef HAVE_SYS_UIO_H +#include +#endif #ifdef HAVE_MEMORY_H #include #endif #ifdef HAVE_MALLOC_H #include #endif -#include + #include #include -#include #include "ffs.h" #include "test_funcs.h" +#include +#include + +#if defined(_MSC_VER) +#include "winsock.h" // ntohl +#endif extern void dump_FMFormat(FMFormat ioformat); -static void test_receive(char *buffer, int buf_size, int finished, +static void test_receive(char *buffer, size_t buf_size, int finished, int test_level); -static void test_all_receive(char *buffer, int buf_size, int finished); -static void write_buffer(FMFormat format, char *buf, int size); +static void test_all_receive(char *buffer, size_t buf_size, int finished); +static void write_buffer(FMFormat format, char *buf, size_t size); static void read_test_only(); static int write_output = 0; @@ -41,9 +49,7 @@ static int verbose = 0; static FMContext loaded_FMcontext = NULL; int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { FMContext src_context; FFSBuffer encode_buffer; @@ -66,7 +72,6 @@ char **argv; ninth_rec var_var; string_array_rec str_array; int i, j; -// struct node nodes[10]; FMFormat sixth_rec_ioformat, ninth_rec_ioformat, string_array_ioformat; FMFormat derive_ioformat, multi_array_ioformat, add_action_ioformat; @@ -644,8 +649,7 @@ char **argv; #endif static char * -get_buffer(size_p) -int *size_p; +get_buffer(size_t *size_p) { static int file_fd = 0; static char *buffer = NULL; @@ -671,6 +675,7 @@ int *size_p; } } if(read(file_fd, &indicator, 4) != 4) exit(1); + indicator = ntohl(indicator); if ((indicator >> 24) == 0x2) { /* got a format coming in */ @@ -722,7 +727,7 @@ static void read_test_only() { char *input; - int size; + size_t size; while ((input = get_buffer(&size)) != NULL) { test_all_receive(input, size, 0); } @@ -738,8 +743,7 @@ static FFSTypeHandle multi_array_ioformat, triangle_ioformat, add_action_ioforma static FFSTypeHandle node_ioformat; static void -set_targets(context) -FFSContext context; +set_targets(FFSContext context) { if ((test_only == NULL) || (strcmp(test_only, "first_rec") == 0)) first_rec_ioformat = FFSset_fixed_target(context, first_format_list); @@ -773,26 +777,26 @@ FFSContext context; node_ioformat = FFSset_fixed_target(context, node_format_list); } -int base_size_func(FFSContext context, char *src, int rec_len, - int native_struct_size) +size_t base_size_func(FFSContext context, char *src, size_t rec_len, + size_t native_struct_size) { return native_struct_size; } -int total_size_func(FFSContext context, char *src, int rec_len, - int native_struct_size) +size_t total_size_func(FFSContext context, char *src, size_t rec_len, + size_t native_struct_size) { return FFS_est_decode_length(context, src, rec_len); } static int -decode_in_place(FFSContext context, char *src, int src_len, void *dest) +decode_in_place(FFSContext context, char *src, size_t src_len, void *dest) { if (FFSdecode_in_place_possible(FFSTypeHandle_from_encode(context, src))) { int ret, header_len; char *real_dest; ret = FFSdecode_in_place(context, src, (void**)&real_dest); - header_len = real_dest - src; + header_len = (int)(intptr_t)(real_dest - src); memcpy(dest, real_dest, src_len - header_len); return ret; } else { @@ -801,22 +805,22 @@ decode_in_place(FFSContext context, char *src, int src_len, void *dest) } static int -decode_IOcontext_wrapper(FFSContext context, char *src, int src_len, void *dest) +decode_IOcontext_wrapper(FFSContext context, char *src, size_t src_len, void *dest) { return FFSdecode(context, src, dest); } static int -decode_to_buffer_IOcontext_wrapper(FFSContext context, char *src, int src_len, +decode_to_buffer_IOcontext_wrapper(FFSContext context, char *src, size_t src_len, void *dest) { return FFSdecode_to_buffer(context, src, dest); } -typedef int (*size_func_t)(FFSContext context, char *src, int buf_size, - int nativ_struct); +typedef size_t (*size_func_t)(FFSContext context, char *src, size_t buf_size, + size_t nativ_struct); -typedef int (*decode_func_t)(FFSContext context, char *src, int src_len, +typedef int (*decode_func_t)(FFSContext context, char *src, size_t src_len, void *dest); size_func_t size_funcs[] = {base_size_func, total_size_func, total_size_func}; @@ -828,10 +832,7 @@ decode_func_t decode_funcs[] = {decode_IOcontext_wrapper, #define NUM_TESTS 3 static void -test_all_receive(buffer, buf_size, finished) -char *buffer; -int buf_size; -int finished; +test_all_receive(char *buffer, size_t buf_size, int finished) { int test_type = 0; char *tmp_buffer = malloc(buf_size); @@ -843,8 +844,7 @@ int finished; } static void* -get_mem(size) -int size; +get_mem(size_t size) { char *buffer; unsigned int beef = 0xdeadbeef; @@ -855,9 +855,7 @@ int size; } static void -check_mem(size, buffer) -int size; -char *buffer; +check_mem(size_t size, char *buffer) { unsigned int beef = 0xdeadbeef; if (memcmp(buffer+size, &beef, 4) != 0) { @@ -867,11 +865,7 @@ char *buffer; static void -test_receive(buffer, buf_size, finished, test_level) -char *buffer; -int buf_size; -int finished; -int test_level; +test_receive(char *buffer, size_t buf_size, int finished, int test_level) { static FFSContext c = NULL; /* static int comment_count[NUM_TESTS] = {0,0,0};*/ @@ -941,7 +935,7 @@ int test_level; } */ } else if (((test_only == NULL) || (strcmp(test_only, "second_rec") == 0)) && (buffer_format == second_rec_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, sizeof(second_rec)); + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(second_rec)); second_rec *read_data = get_mem(size); memset(read_data, 0, size); if (!decode_func(rcv_context, buffer, buf_size, read_data)) @@ -954,7 +948,7 @@ int test_level; free(read_data); } else if (((test_only == NULL) || (strcmp(test_only, "third_rec") == 0)) && (buffer_format == third_rec_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, sizeof(third_rec)); + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(third_rec)); third_rec *read_data = get_mem(size); memset(read_data, 0, size); if (!decode_func(rcv_context, buffer, buf_size, read_data)) @@ -967,7 +961,7 @@ int test_level; free(read_data); } else if (((test_only == NULL) || (strcmp(test_only, "fourth_rec") == 0)) && (buffer_format == fourth_rec_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, sizeof(fourth_rec)); + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(fourth_rec)); fourth_rec *read_data = get_mem(size); memset(read_data, 0, size); if (!decode_func(rcv_context, buffer, buf_size, read_data)) @@ -981,7 +975,7 @@ int test_level; fourth_rec_count[test_level]++; } else if (((test_only == NULL) || (strcmp(test_only, "fifth_rec") == 0)) && (buffer_format == fifth_rec_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, sizeof(fifth_rec)); + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(fifth_rec)); fifth_rec *read_data = get_mem(size); memset(read_data, 0, size); if (!decode_func(rcv_context, buffer, buf_size, read_data)) @@ -995,7 +989,7 @@ int test_level; fifth_rec_count[test_level]++; } else if (((test_only == NULL) || (strcmp(test_only, "sixth_rec") == 0)) && (buffer_format == sixth_rec_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, sizeof(sixth_rec)); + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(sixth_rec)); sixth_rec *read_data = get_mem(size); memset(read_data, 0, size); if (!decode_func(rcv_context, buffer, buf_size, read_data)) @@ -1008,7 +1002,7 @@ int test_level; free(read_data); } else if (((test_only == NULL) || (strcmp(test_only, "nested_rec") == 0)) && (buffer_format == nested_rec_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, sizeof(nested_rec)); + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(nested_rec)); nested_rec *read_data = get_mem(size); memset(read_data, 0, size); if (!decode_func(rcv_context, buffer, buf_size, read_data)) @@ -1021,7 +1015,7 @@ int test_level; free(read_data); } else if (((test_only == NULL) || (strcmp(test_only, "later_rec") == 0)) && (buffer_format == later_rec_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, sizeof(later_rec)); + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(later_rec)); later_rec *read_data = get_mem(size); memset(read_data, 0, size); if (!decode_func(rcv_context, buffer, buf_size, read_data)) @@ -1034,7 +1028,7 @@ int test_level; free(read_data); } else if (((test_only == NULL) || (strcmp(test_only, "ninth_rec") == 0)) && (buffer_format == ninth_rec_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, sizeof(ninth_rec)); + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(ninth_rec)); ninth_rec *read_data = get_mem(size); memset(read_data, 0, size); if (!decode_func(rcv_context, buffer, buf_size, read_data)) @@ -1047,7 +1041,7 @@ int test_level; free(read_data); } else if (((test_only == NULL) || (strcmp(test_only, "string_array") == 0)) && (buffer_format == string_array_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(string_array_rec)); string_array_rec *sread_data = get_mem(size); memset(sread_data, 0, size); @@ -1062,7 +1056,7 @@ int test_level; free(sread_data); } else if (((test_only == NULL) || (strcmp(test_only, "derive") == 0)) && (buffer_format == derive_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(DeriveMsg)); DeriveMsgPtr read_data = get_mem(size); memset(read_data, 0, size); @@ -1076,7 +1070,7 @@ int test_level; free(read_data); } else if (((test_only == NULL) || (strcmp(test_only, "multi_array") == 0)) && (buffer_format == multi_array_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(multi_array)); multi_array_rec *read_data = get_mem(size); memset(read_data, 0, size); @@ -1090,7 +1084,7 @@ int test_level; free(read_data); } else if (((test_only == NULL) || (strcmp(test_only, "triangle_param") == 0)) && (buffer_format == triangle_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(multi_array)); triangle_param *read_data = get_mem(size); memset(read_data, 0, size); @@ -1104,7 +1098,7 @@ int test_level; free(read_data); } else if (((test_only == NULL) || (strcmp(test_only, "add_action") == 0)) && (buffer_format == add_action_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(add_rec)); add_rec_ptr read_data = get_mem(size); memset(read_data, 0, size); @@ -1118,7 +1112,7 @@ int test_level; free(read_data); } else if (((test_only == NULL) || (strcmp(test_only, "node") == 0)) && (buffer_format == node_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(add_rec)); node_ptr read_data = get_mem(size); struct visit_table v; @@ -1189,10 +1183,7 @@ static FMFormat seen_formats[100]; static int seen_count = 0; static void -write_buffer(format, buf, size) -FMFormat format; -char *buf; -int size; +write_buffer(FMFormat format, char *buf, size_t size) { static int file_fd = 0; int i; @@ -1213,7 +1204,7 @@ int size; int indicator; int format_len; } format_header; - struct iovec vec[4]; + struct FFSEncodeVec vec[4]; char *server_id; int id_len; char *server_rep; @@ -1241,10 +1232,17 @@ int size; vec[2].iov_base = server_rep; vec[3].iov_len = 0; vec[3].iov_base = NULL; - if (writev(file_fd, vec, 3) == -1) { +#ifndef _MSC_VER + if (writev(file_fd, (const struct iovec *) vec, 3) == -1) { printf("Writev failed\n"); exit(1); } +#else + write(file_fd, vec[0].iov_base, (int)vec[0].iov_len); + write(file_fd, vec[1].iov_base, (int)vec[1].iov_len); + write(file_fd, vec[2].iov_base, (int)vec[2].iov_len); +#endif + seen_formats[seen_count++] = format; } @@ -1255,5 +1253,5 @@ int size; indicator = htonl((size & 0xffffff) | 0x3 << 24); if (write(file_fd, &indicator, 4) != 4) {printf("Write 4 failed\n");exit(1);} - if (write(file_fd, buf, size) != size) {printf("Write size failed\n");exit(1);} + if (write(file_fd, buf, (unsigned int)size) != size) {printf("Write size failed\n");exit(1);} } diff --git a/ffs/tests/context_test2.c b/ffs/tests/context_test2.c index 218a7ba6a8..654dcadc68 100644 --- a/ffs/tests/context_test2.c +++ b/ffs/tests/context_test2.c @@ -19,11 +19,13 @@ #include "ffs.h" #include "test_funcs.h" +#include +#include -static void test_receive(char *buffer, int buf_size, int finished, +static void test_receive(char *buffer, size_t buf_size, int finished, int test_level); -static void test_all_receive(char *buffer, int buf_size, int finished); -static void write_buffer(char *buf, int size); +static void test_all_receive(char *buffer, size_t buf_size, int finished); +static void write_buffer(char *buf, size_t size); static void read_test_only(); static int write_output = 0; @@ -37,9 +39,7 @@ static int verbose = 0; static FMContext loaded_FMcontext = NULL; int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { FMContext src_context; FFSBuffer encode_buffer; @@ -173,8 +173,7 @@ char **argv; #endif static char * -get_buffer(size_p) -int *size_p; +get_buffer(size_t *size_p) { static int file_fd = 0; static char *buffer = NULL; @@ -236,7 +235,7 @@ static void read_test_only() { char *input; - int size; + size_t size; while ((input = get_buffer(&size)) != NULL) { test_all_receive(input, size, 0); } @@ -253,34 +252,33 @@ static FFSTypeHandle psa_ioformat; static FFSTypeHandle reader_register_ioformat; static void -set_targets(context) -FFSContext context; +set_targets(FFSContext context) { node_ioformat = FFSset_fixed_target(context, node_format_list); psa_ioformat = FFSset_fixed_target(context, pointer_to_static_format_list); reader_register_ioformat = FFSset_fixed_target(context, reader_register_format_list); } -int base_size_func(FFSContext context, char *src, int rec_len, - int native_struct_size) +size_t base_size_func(FFSContext context, char *src, size_t rec_len, + size_t native_struct_size) { return native_struct_size; } -int total_size_func(FFSContext context, char *src, int rec_len, - int native_struct_size) +size_t total_size_func(FFSContext context, char *src, size_t rec_len, + size_t native_struct_size) { return FFS_est_decode_length(context, src, rec_len); } static int -decode_in_place(FFSContext context, char *src, int src_len, void *dest) +decode_in_place(FFSContext context, char *src, size_t src_len, void *dest) { if (FFSdecode_in_place_possible(FFSTypeHandle_from_encode(context, src))) { int ret, header_len; char *real_dest; ret = FFSdecode_in_place(context, src, (void**)&real_dest); - header_len = real_dest - src; + header_len = (int)(intptr_t)(real_dest - src); memcpy(dest, real_dest, src_len - header_len); return ret; } else { @@ -289,22 +287,22 @@ decode_in_place(FFSContext context, char *src, int src_len, void *dest) } static int -decode_IOcontext_wrapper(FFSContext context, char *src, int src_len, void *dest) +decode_IOcontext_wrapper(FFSContext context, char *src, size_t src_len, void *dest) { return FFSdecode(context, src, dest); } static int -decode_to_buffer_IOcontext_wrapper(FFSContext context, char *src, int src_len, +decode_to_buffer_IOcontext_wrapper(FFSContext context, char *src, size_t src_len, void *dest) { return FFSdecode_to_buffer(context, src, dest); } -typedef int (*size_func_t)(FFSContext context, char *src, int buf_size, - int nativ_struct); +typedef size_t (*size_func_t)(FFSContext context, char *src, size_t buf_size, + size_t nativ_struct); -typedef int (*decode_func_t)(FFSContext context, char *src, int src_len, +typedef int (*decode_func_t)(FFSContext context, char *src, size_t src_len, void *dest); size_func_t size_funcs[] = {base_size_func, total_size_func, total_size_func}; @@ -316,10 +314,7 @@ decode_func_t decode_funcs[] = {decode_IOcontext_wrapper, #define NUM_TESTS 3 static void -test_all_receive(buffer, buf_size, finished) -char *buffer; -int buf_size; -int finished; +test_all_receive(char *buffer, size_t buf_size, int finished) { int test_type = 0; char *tmp_buffer = malloc(buf_size); @@ -331,8 +326,7 @@ int finished; } static void* -get_mem(size) -int size; +get_mem(size_t size) { char *buffer; unsigned int beef = 0xdeadbeef; @@ -343,9 +337,7 @@ int size; } static void -check_mem(size, buffer) -int size; -char *buffer; +check_mem(size_t size, char *buffer) { unsigned int beef = 0xdeadbeef; if (memcmp(buffer+size, &beef, 4) != 0) { @@ -355,11 +347,7 @@ char *buffer; static void -test_receive(buffer, buf_size, finished, test_level) -char *buffer; -int buf_size; -int finished; -int test_level; +test_receive(char *buffer, size_t buf_size, int finished, int test_level) { static FFSContext c = NULL; static int node_rec_count[NUM_TESTS] = {0,0,0}; @@ -382,7 +370,7 @@ int test_level; } if (((test_only == NULL) || (strcmp(test_only, "node") == 0)) && (buffer_format == node_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(add_rec)); node_ptr read_data = get_mem(size); struct visit_table v; @@ -404,7 +392,7 @@ int test_level; node_rec_count[test_level]++; } else if (((test_only == NULL) || (strcmp(test_only, "psa") == 0)) && (buffer_format == psa_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(add_rec)); pointer_to_static_array_ptr read_data = get_mem(size); memset(read_data, 0, size); @@ -418,7 +406,7 @@ int test_level; free(read_data); } else if (((test_only == NULL) || (strcmp(test_only, "reader_register") == 0)) && (buffer_format == reader_register_ioformat)) { - int size = size_func(rcv_context, buffer, buf_size, + size_t size = size_func(rcv_context, buffer, buf_size, sizeof(add_rec)); struct _reader_register_msg *read_data = get_mem(size); memset(read_data, 0, size); @@ -453,9 +441,7 @@ int test_level; } static void -write_buffer(buf, size) -char *buf; -int size; +write_buffer(char *buf, size_t size) { static int file_fd = 0; unsigned short ssize; @@ -465,11 +451,11 @@ int size; if (file_fd == 0) { file_fd = open(output_file, O_WRONLY|O_CREAT|O_TRUNC|O_BINARY, 0777); } - printf("Writing buffer of size %d\n", size); - ssize = size; + printf("Writing buffer of size %zd\n", size); + ssize = (unsigned short) size; csize = ssize & 0xff; if (write(file_fd, &csize, 1) != 1) exit(1);/* low byte of 2-byte size */ csize = ((ssize >> 8) & 0xff); if (write(file_fd, &csize, 1) != 1) exit(1);/* high byte of 2-byte size */ - if (write(file_fd, buf, size) != size) exit(1); + if (write(file_fd, buf, (int)size) != size) exit(1); } diff --git a/ffs/tests/ffs_file_test.c b/ffs/tests/ffs_file_test.c index 764b2e0aba..da860348b9 100755 --- a/ffs/tests/ffs_file_test.c +++ b/ffs/tests/ffs_file_test.c @@ -19,36 +19,26 @@ static int verbose = 0; static char *test_only = NULL; -int -size_func_sizeof(iofile, size) -FFSFile iofile; -int size; +size_t +size_func_sizeof(FFSFile iofile, size_t size) { return size; } -int -size_func_next_size(iofile, size) -FFSFile iofile; -int size; +size_t +size_func_next_size(FFSFile iofile, size_t size) { return FFSfile_next_decode_length(iofile); } int -read_func_no_buffer(iofile, data, size) -FFSFile iofile; -void *data; -int size; +read_func_no_buffer(FFSFile iofile, void *data, size_t size) { return FFSread(iofile, data); } int -read_func_buffer(iofile, data, size) -FFSFile iofile; -void *data; -int size; +read_func_buffer(FFSFile iofile, void *data, size_t size) { FFSBuffer b = create_fixed_FFSBuffer(data, size); int ret = FFSread_to_buffer(iofile, b, NULL); @@ -65,8 +55,7 @@ static FFSTypeHandle multi_array_ioformat, triangle_ioformat, add_action_ioforma static FFSTypeHandle node_ioformat, embedded_rec_ioformat; static void -set_targets(context) -FFSContext context; +set_targets(FFSContext context) { if ((test_only == NULL) || (strcmp(test_only, "first_rec") == 0)) first_rec_ioformat = FFSset_fixed_target(context, first_format_list); @@ -113,10 +102,7 @@ FFSContext context; } void -do_test(input_file, size_func, read_func) -char *input_file; -int (*size_func) (FFSFile, int); -int (*read_func) (); +do_test(char *input_file, size_t (*size_func) (FFSFile, size_t), int (*read_func) (FFSFile iofile, void *data, size_t size)) { FFSFile iofile; int finished = 0; @@ -186,7 +172,7 @@ int (*read_func) (); exit(1); } } else if (FFSnext_type_handle(iofile) == second_rec_ioformat) { - int size = size_func(iofile, sizeof(second_rec)); + size_t size = size_func(iofile, sizeof(second_rec)); second_rec *read_data = malloc(size); memset(read_data, 0, size); if (!read_func(iofile, read_data, size)) @@ -197,7 +183,7 @@ int (*read_func) (); } free(read_data); } else if (FFSnext_type_handle(iofile) == third_rec_ioformat) { - int size = size_func(iofile, sizeof(third_rec)); + size_t size = size_func(iofile, sizeof(third_rec)); third_rec *read_data = malloc(size); memset(read_data, 0, size); if (!read_func(iofile, read_data, size)) @@ -208,7 +194,7 @@ int (*read_func) (); } free(read_data); } else if (FFSnext_type_handle(iofile) == fourth_rec_ioformat) { - int size = size_func(iofile, sizeof(fourth_rec)); + size_t size = size_func(iofile, sizeof(fourth_rec)); fourth_rec *read_data = malloc(size); memset(read_data, 0, size); if (!read_func(iofile, read_data, size)) @@ -224,7 +210,7 @@ int (*read_func) (); printf("Emb Rec failure\n"); FFSread(iofile, NULL); } else if (FFSnext_type_handle(iofile) == fifth_rec_ioformat) { - int size = size_func(iofile, sizeof(fifth_rec)); + size_t size = size_func(iofile, sizeof(fifth_rec)); fifth_rec *read_data = malloc(size); memset(read_data, 0, size); if (!read_func(iofile, read_data, size)) @@ -236,7 +222,7 @@ int (*read_func) (); free(read_data); fifth_rec_count++; } else if (FFSnext_type_handle(iofile) == sixth_rec_ioformat) { - int size = size_func(iofile, sizeof(sixth_rec)); + size_t size = size_func(iofile, sizeof(sixth_rec)); sixth_rec *read_data = malloc(size); memset(read_data, 0, size); if (!read_func(iofile, read_data, size)) @@ -247,7 +233,7 @@ int (*read_func) (); } free(read_data); } else if (FFSnext_type_handle(iofile) == nested_rec_ioformat) { - int size = size_func(iofile, sizeof(nested_rec)); + size_t size = size_func(iofile, sizeof(nested_rec)); nested_rec *read_data = malloc(size); memset(read_data, 0, size); if (!read_func(iofile, read_data, size)) @@ -258,7 +244,7 @@ int (*read_func) (); } free(read_data); } else if (FFSnext_type_handle(iofile) == later_rec_ioformat) { - int size = size_func(iofile, sizeof(later_rec)); + size_t size = size_func(iofile, sizeof(later_rec)); later_rec *read_data = malloc(size); memset(read_data, 0, size); if (!read_func(iofile, read_data, size)) @@ -269,7 +255,7 @@ int (*read_func) (); } free(read_data); } else if (FFSnext_type_handle(iofile) == ninth_rec_ioformat) { - int size = size_func(iofile, sizeof(ninth_rec)); + size_t size = size_func(iofile, sizeof(ninth_rec)); ninth_rec *read_data = malloc(size); memset(read_data, 0, size); if (!read_func(iofile, read_data, size)) @@ -280,7 +266,7 @@ int (*read_func) (); } free(read_data); } else if (FFSnext_type_handle(iofile) == string_array_ioformat) { - int size = size_func(iofile, sizeof(string_array_rec)); + size_t size = size_func(iofile, sizeof(string_array_rec)); string_array_rec *read_data = malloc(size); memset(read_data, 0, size); if (!read_func(iofile, read_data, size)) @@ -358,9 +344,7 @@ int (*read_func) (); int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { int i; char *input_file = "test_output"; diff --git a/ffs/tests/ffs_index_test.c b/ffs/tests/ffs_index_test.c index c00afdf1d4..ad3ade1801 100644 --- a/ffs/tests/ffs_index_test.c +++ b/ffs/tests/ffs_index_test.c @@ -19,18 +19,14 @@ static int verbose = 0; static char *test_only = NULL; -int -size_func_sizeof(iofile, size) -FFSFile iofile; -int size; +size_t +size_func_sizeof(FFSFile iofile, size_t size) { return size; } -int -size_func_next_size(iofile, size) -FFSFile iofile; -int size; +size_t +size_func_next_size(FFSFile iofile, size_t size) { return FFSfile_next_decode_length(iofile); } @@ -38,19 +34,13 @@ int size; attr_list last_attrs = NULL; int -read_func_no_buffer(iofile, data, size) -FFSFile iofile; -void *data; -int size; +read_func_no_buffer(FFSFile iofile, void *data, size_t size) { return FFSread_attr(iofile, data, &last_attrs); } int -read_func_buffer(iofile, data, size) -FFSFile iofile; -void *data; -int size; +read_func_buffer(FFSFile iofile, void *data, size_t size) { FFSBuffer b = create_fixed_FFSBuffer(data, size); int ret = FFSread_to_buffer(iofile, b, NULL); @@ -68,8 +58,7 @@ static FFSTypeHandle multi_array_ioformat, triangle_ioformat, add_action_ioforma static FFSTypeHandle node_ioformat, embedded_rec_ioformat; static void -set_targets(context) -FFSContext context; +set_targets(FFSContext context) { if ((test_only == NULL) || (strcmp(test_only, "first_rec") == 0)) first_rec_ioformat = FFSset_fixed_target(context, first_format_list); @@ -116,10 +105,7 @@ FFSContext context; } void -do_test(input_file, size_func, read_func) -char *input_file; -int (*size_func) (FFSFile, int); -int (*read_func) (); +do_test(char *input_file, size_t (*size_func) (FFSFile, size_t), int (*read_func) (FFSFile iofile, void *data, size_t size)) { FFSFile iofile; int item_count = 0; @@ -217,7 +203,7 @@ int (*read_func) (); exit(1); } } else if (FFSnext_type_handle(iofile) == second_rec_ioformat) { - int size = size_func(iofile, sizeof(second_rec)); + size_t size = size_func(iofile, sizeof(second_rec)); second_rec *read_data = malloc(size); int iter_attr = -1; memset(read_data, 0, size); @@ -235,7 +221,7 @@ int (*read_func) (); second_rec_count++; free(read_data); } else if (FFSnext_type_handle(iofile) == third_rec_ioformat) { - int size = size_func(iofile, sizeof(third_rec)); + size_t size = size_func(iofile, sizeof(third_rec)); third_rec *read_data = malloc(size); int iter_attr = -1; memset(read_data, 0, size); @@ -250,7 +236,7 @@ int (*read_func) (); free(read_data); third_rec_count++; } else if (FFSnext_type_handle(iofile) == fourth_rec_ioformat) { - int size = size_func(iofile, sizeof(fourth_rec)); + size_t size = size_func(iofile, sizeof(fourth_rec)); fourth_rec *read_data = malloc(size); memset(read_data, 0, size); if (!read_func(iofile, read_data, size)) @@ -266,7 +252,7 @@ int (*read_func) (); printf("Emb Rec failure\n"); FFSread(iofile, NULL); } else if (FFSnext_type_handle(iofile) == fifth_rec_ioformat) { - int size = size_func(iofile, sizeof(fifth_rec)); + size_t size = size_func(iofile, sizeof(fifth_rec)); fifth_rec *read_data = malloc(size); int iter_attr = -1; memset(read_data, 0, size); @@ -280,7 +266,7 @@ int (*read_func) (); free(read_data); fifth_rec_count++; } else if (FFSnext_type_handle(iofile) == sixth_rec_ioformat) { - int size = size_func(iofile, sizeof(sixth_rec)); + size_t size = size_func(iofile, sizeof(sixth_rec)); sixth_rec *read_data = malloc(size); memset(read_data, 0, size); if (!read_func(iofile, read_data, size)) @@ -291,7 +277,7 @@ int (*read_func) (); } free(read_data); } else if (FFSnext_type_handle(iofile) == nested_rec_ioformat) { - int size = size_func(iofile, sizeof(nested_rec)); + size_t size = size_func(iofile, sizeof(nested_rec)); nested_rec *read_data = malloc(size); memset(read_data, 0, size); if (!read_func(iofile, read_data, size)) @@ -303,7 +289,7 @@ int (*read_func) (); } free(read_data); } else if (FFSnext_type_handle(iofile) == later_rec_ioformat) { - int size = size_func(iofile, sizeof(later_rec)); + size_t size = size_func(iofile, sizeof(later_rec)); later_rec *read_data = malloc(size); memset(read_data, 0, size); if (!read_func(iofile, read_data, size)) @@ -314,7 +300,7 @@ int (*read_func) (); } free(read_data); } else if (FFSnext_type_handle(iofile) == ninth_rec_ioformat) { - int size = size_func(iofile, sizeof(ninth_rec)); + size_t size = size_func(iofile, sizeof(ninth_rec)); ninth_rec *read_data = malloc(size); memset(read_data, 0, size); if (!read_func(iofile, read_data, size)) @@ -325,7 +311,7 @@ int (*read_func) (); } free(read_data); } else if (FFSnext_type_handle(iofile) == string_array_ioformat) { - int size = size_func(iofile, sizeof(string_array_rec)); + size_t size = size_func(iofile, sizeof(string_array_rec)); string_array_rec *read_data = malloc(size); memset(read_data, 0, size); if (!read_func(iofile, read_data, size)) @@ -405,9 +391,7 @@ int (*read_func) (); int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { int i; char *input_file = "test_output"; diff --git a/ffs/tests/ffs_write.c b/ffs/tests/ffs_write.c index 6189042627..048c267cb7 100755 --- a/ffs/tests/ffs_write.c +++ b/ffs/tests/ffs_write.c @@ -102,7 +102,7 @@ main(int argc, char **argv) str_list[0].opt_info = &opt_info[0]; str_list[1].format_name = NULL; - opt_info[0].info_len = strlen(first_xml) +1; + opt_info[0].info_len = (int)strlen(first_xml) +1; opt_info[0].info_block = first_xml; first_rec_ioformat = register_data_format(src_context, str_list); str_list[0].format_name = "string format"; @@ -110,7 +110,7 @@ main(int argc, char **argv) str_list[0].struct_size = sizeof(second_rec); str_list[0].opt_info = &opt_info[0]; str_list[1].format_name = NULL; - opt_info[0].info_len = strlen(string_xml) +1; + opt_info[0].info_len = (int)strlen(string_xml) +1; opt_info[0].info_block = string_xml; second_rec_ioformat = register_data_format(src_context, str_list); @@ -119,7 +119,7 @@ main(int argc, char **argv) str_list[0].struct_size = sizeof(third_rec); str_list[0].opt_info = &opt_info[0]; str_list[1].format_name = NULL; - opt_info[0].info_len = strlen(third_xml) +1; + opt_info[0].info_len = (int)strlen(third_xml) +1; opt_info[0].info_block = third_xml; third_rec_ioformat = register_data_format(src_context, str_list); @@ -128,7 +128,7 @@ main(int argc, char **argv) str_list[0].struct_size = sizeof(fourth_rec); str_list[0].opt_info = &opt_info[0]; str_list[1].format_name = NULL; - opt_info[0].info_len = strlen(fourth_xml) +1; + opt_info[0].info_len = (int)strlen(fourth_xml) +1; opt_info[0].info_block = fourth_xml; fourth_rec_ioformat = register_data_format(src_context, str_list); @@ -137,7 +137,7 @@ main(int argc, char **argv) str_list[0].struct_size = sizeof(embedded_rec); str_list[0].opt_info = &opt_info[0]; str_list[1].format_name = NULL; - opt_info[0].info_len = strlen(embedded_xml) +1; + opt_info[0].info_len = (int)strlen(embedded_xml) +1; opt_info[0].info_block = embedded_xml; embedded_rec_ioformat = register_data_format(src_context, str_list); @@ -153,10 +153,10 @@ main(int argc, char **argv) str_list[1].struct_size = sizeof(second_rec); str_list[1].opt_info = &opt_info2[0]; str_list[2].format_name = NULL; - opt_info[0].info_len = strlen(var_array_xml) +1; + opt_info[0].info_len = (int)strlen(var_array_xml) +1; opt_info[0].info_block = var_array_xml; opt_info2[0].info_type = 0x584D4C20; /* XML */ - opt_info2[0].info_len = strlen(string_xml) +1; + opt_info2[0].info_len = (int)strlen(string_xml) +1; opt_info2[0].info_block = string_xml; opt_info2[1].info_type = 0; opt_info2[1].info_len = 0; @@ -276,7 +276,7 @@ main(int argc, char **argv) str_list[0].opt_info = &opt_info[0]; str_list[1].format_name = NULL; - opt_info[0].info_len = strlen(first_xml) +1; + opt_info[0].info_len = (int)strlen(first_xml) +1; opt_info[0].info_block = first_xml; first_rec_ioformat = register_data_format(src_context, str_list); @@ -286,7 +286,7 @@ main(int argc, char **argv) str_list[0].struct_size = sizeof(second_rec); str_list[0].opt_info = &opt_info[0]; str_list[1].format_name = NULL; - opt_info[0].info_len = strlen(string_xml) +1; + opt_info[0].info_len = (int)strlen(string_xml) +1; opt_info[0].info_block = string_xml; second_rec_ioformat = register_data_format(src_context, str_list); @@ -295,7 +295,7 @@ main(int argc, char **argv) str_list[0].struct_size = sizeof(third_rec); str_list[0].opt_info = &opt_info[0]; str_list[1].format_name = NULL; - opt_info[0].info_len = strlen(third_xml) +1; + opt_info[0].info_len = (int)strlen(third_xml) +1; opt_info[0].info_block = third_xml; third_rec_ioformat = register_data_format(src_context, str_list); @@ -304,7 +304,7 @@ main(int argc, char **argv) str_list[0].struct_size = sizeof(fourth_rec); str_list[0].opt_info = &opt_info[0]; str_list[1].format_name = NULL; - opt_info[0].info_len = strlen(fourth_xml) +1; + opt_info[0].info_len = (int)strlen(fourth_xml) +1; opt_info[0].info_block = fourth_xml; fourth_rec_ioformat = register_data_format(src_context, str_list); @@ -313,7 +313,7 @@ main(int argc, char **argv) str_list[0].struct_size = sizeof(embedded_rec); str_list[0].opt_info = &opt_info[0]; str_list[1].format_name = NULL; - opt_info[0].info_len = strlen(embedded_xml) +1; + opt_info[0].info_len = (int)strlen(embedded_xml) + 1; opt_info[0].info_block = embedded_xml; embedded_rec_ioformat = register_data_format(src_context, str_list); (void)embedded_rec_ioformat; @@ -329,10 +329,10 @@ main(int argc, char **argv) str_list[1].struct_size = sizeof(second_rec); str_list[1].opt_info = &opt_info2[0]; str_list[2].format_name = NULL; - opt_info[0].info_len = strlen(var_array_xml) +1; + opt_info[0].info_len = (int)strlen(var_array_xml) +1; opt_info[0].info_block = var_array_xml; opt_info2[0].info_type = 0x584D4C20; /* XML */ - opt_info2[0].info_len = strlen(string_xml) +1; + opt_info2[0].info_len = (int)strlen(string_xml) +1; opt_info2[0].info_block = string_xml; opt_info2[1].info_type = 0; opt_info2[1].info_len = 0; @@ -346,7 +346,7 @@ main(int argc, char **argv) str_list[0].struct_size = sizeof(later_rec); str_list[0].opt_info = NULL; str_list[1].format_name = NULL; - opt_info[0].info_len = strlen(later_xml) +1; + opt_info[0].info_len = (int)strlen(later_xml) +1; opt_info[0].info_block = later_xml; later_ioformat = register_data_format(src_context, str_list); @@ -359,7 +359,7 @@ main(int argc, char **argv) str_list[1].struct_size = sizeof(second_rec); str_list[1].opt_info = &opt_info2[0]; str_list[2].format_name = NULL; - opt_info[0].info_len = strlen(nested_xml) +1; + opt_info[0].info_len = (int)strlen(nested_xml) +1; opt_info[0].info_block = nested_xml; nested_ioformat = register_data_format(src_context, str_list); @@ -433,7 +433,7 @@ main(int argc, char **argv) str_list[0].struct_size = sizeof(later_rec); str_list[0].opt_info = &opt_info[0]; str_list[1].format_name = NULL; - opt_info[0].info_len = strlen(later2_xml) +1; + opt_info[0].info_len = (int)strlen(later2_xml) +1; opt_info[0].info_block = later2_xml; later_ioformat = register_data_format(src_context, str_list); @@ -506,10 +506,10 @@ main(int argc, char **argv) str_list[1].struct_size = sizeof(struct _io_encode_vec); str_list[1].opt_info = &opt_info2[0]; str_list[2].format_name = NULL; - opt_info[0].info_len = strlen(event_xml) +1; + opt_info[0].info_len = (int)strlen(event_xml) +1; opt_info[0].info_block = event_xml; - opt_info2[0].info_len = strlen(event_vec_xml) +1; + opt_info2[0].info_len = (int)strlen(event_vec_xml) +1; opt_info2[0].info_block = event_vec_xml; ninth_rec_ioformat = register_data_format(src_context, str_list); diff --git a/ffs/tests/fortran_test.c b/ffs/tests/fortran_test.c index 5a2d8a77c0..a3948ac671 100755 --- a/ffs/tests/fortran_test.c +++ b/ffs/tests/fortran_test.c @@ -20,10 +20,13 @@ #include "test_funcs.h" -static void test_receive (char *buffer, int buf_size, int finished, +#include +#include + +static void test_receive (char *buffer, size_t buf_size, int finished, int test_level); -static void test_all_receive (char *buffer, int buf_size, int finished); -static void write_buffer (char *buf, int size); +static void test_all_receive (char *buffer, size_t buf_size, int finished); +static void write_buffer (char *buf, size_t size); static void read_test_only(); static int write_output = 0; @@ -35,9 +38,7 @@ static char *test_only = NULL; static FFSContext rcv_context = NULL; int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { FMContext src_context; FFSBuffer buffer; @@ -75,7 +76,7 @@ char **argv; if (fail) exit(1); exit(0); } - src_context = create_FMcontext(NULL); + src_context = create_FMcontext(); set_array_order_FMContext(src_context, 1); fortran_array_ioformat = register_data_format(src_context, @@ -104,8 +105,7 @@ char **argv; #endif static char * -get_buffer(size_p) -int *size_p; +get_buffer(int *size_p) { static int file_fd = 0; static char *buffer = NULL; @@ -175,33 +175,32 @@ read_test_only() static FFSTypeHandle multi_array_ioformat; static void -set_targets(context) -FFSContext context; +set_targets(FFSContext context) { multi_array_ioformat = FFSset_fixed_target(context, multi_array_format_list); } -int base_size_func(FFSContext context, char *src, int rec_len, - int native_struct_size) +size_t base_size_func(FFSContext context, char *src, size_t rec_len, + size_t native_struct_size) { return native_struct_size; } -int total_size_func(FFSContext context, char *src, int rec_len, - int native_struct_size) +size_t total_size_func(FFSContext context, char *src, size_t rec_len, + size_t native_struct_size) { return FFS_est_decode_length(context, src, rec_len); } static int -decode_in_place(FFSContext context, char *src, int src_len, void *dest) +decode_in_place(FFSContext context, char *src, size_t src_len, void *dest) { if (FFSdecode_in_place_possible(FFSTypeHandle_from_encode(context, src))) { int ret, header_len; char *real_dest; ret = FFSdecode_in_place(context, src, (void**)&real_dest); - header_len = real_dest - src; + header_len = (int)(intptr_t)(real_dest - src); memcpy(dest, real_dest, src_len - header_len); return ret; } else { @@ -210,22 +209,22 @@ decode_in_place(FFSContext context, char *src, int src_len, void *dest) } static int -decode_IOcontext_wrapper(FFSContext context, char *src, int src_len, void *dest) +decode_IOcontext_wrapper(FFSContext context, char *src, size_t src_len, void *dest) { return FFSdecode(context, src, dest); } static int -decode_to_buffer_IOcontext_wrapper(FFSContext context, char *src, int src_len, +decode_to_buffer_IOcontext_wrapper(FFSContext context, char *src, size_t src_len, void *dest) { return FFSdecode_to_buffer(context, src, dest); } -typedef int (*size_func_t)(FFSContext context, char *src, int buf_size, - int nativ_struct); +typedef size_t (*size_func_t)(FFSContext context, char *src, size_t buf_size, + size_t nativ_struct); -typedef int (*decode_func_t)(FFSContext context, char *src, int src_len, +typedef int (*decode_func_t)(FFSContext context, char *src, size_t src_len, void *dest); size_func_t size_funcs[] = {base_size_func, total_size_func, total_size_func}; @@ -237,10 +236,7 @@ decode_func_t decode_funcs[] = {decode_IOcontext_wrapper, #define NUM_TESTS 3 static void -test_all_receive(buffer, buf_size, finished) -char *buffer; -int buf_size; -int finished; +test_all_receive(char *buffer, size_t buf_size, int finished) { int test_type = 0; char *tmp_buffer = malloc(buf_size); @@ -252,8 +248,7 @@ int finished; } static void* -get_mem(size) -int size; +get_mem(size_t size) { char *buffer; unsigned int beef = 0xdeadbeef; @@ -264,9 +259,7 @@ int size; } static void -check_mem(size, buffer) -int size; -char *buffer; +check_mem(size_t size, char *buffer) { unsigned int beef = 0xdeadbeef; if (memcmp(buffer+size, &beef, 4) != 0) { @@ -276,11 +269,7 @@ char *buffer; static void -test_receive(buffer, buf_size, finished, test_level) -char *buffer; -int buf_size; -int finished; -int test_level; +test_receive(char *buffer, size_t buf_size, int finished, int test_level) { static FFSContext c = NULL; @@ -300,7 +289,7 @@ int test_level; exit(1); } if (buffer_format == multi_array_ioformat) { - int size = size_func(c, buffer, buf_size, + size_t size = size_func(c, buffer, buf_size, sizeof(multi_array)); multi_array_rec2 *read_data = get_mem(size); memset(read_data, 0, size); @@ -331,9 +320,7 @@ int test_level; } static void -write_buffer(buf, size) -char *buf; -int size; +write_buffer(char *buf, size_t size) { static int file_fd = 0; unsigned short ssize; @@ -343,10 +330,10 @@ int size; if (file_fd == 0) { file_fd = open(output_file, O_WRONLY|O_CREAT|O_TRUNC|O_BINARY, 0777); } - ssize = size; + ssize = (unsigned short) size; csize = ssize & 0xff; if (write(file_fd, &csize, 1) != 1) exit(1);/* low byte of 2-byte size */ csize = ((ssize >> 8) & 0xff); if (write(file_fd, &csize, 1) != 1) exit(1);/* high byte of 2-byte size */ - if (write(file_fd, buf, size) != size) exit(1); + if (write(file_fd, buf, (int)size) != size) exit(1); } diff --git a/ffs/tests/get_set_test.c b/ffs/tests/get_set_test.c index 108dc67aa3..53727d7aeb 100644 --- a/ffs/tests/get_set_test.c +++ b/ffs/tests/get_set_test.c @@ -26,9 +26,7 @@ */ int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { third_rec test_rec; void *data_ptr, *tmp_ptr, *encode_buffer, *base_data; diff --git a/ffs/tests/marshal_test.c b/ffs/tests/marshal_test.c index a5068a57f9..106dc2e016 100644 --- a/ffs/tests/marshal_test.c +++ b/ffs/tests/marshal_test.c @@ -4,7 +4,9 @@ #include #include #include +#ifndef _MSC_VER #include +#endif #include "ffs.h" typedef struct _second_rec { diff --git a/ffs/tests/marshal_test2.c b/ffs/tests/marshal_test2.c index 397859ad0a..b9a44ed947 100644 --- a/ffs/tests/marshal_test2.c +++ b/ffs/tests/marshal_test2.c @@ -4,7 +4,9 @@ #include #include #include +#ifndef _MSC_VER #include +#endif #include "ffs.h" extern void diff --git a/ffs/tests/no_leaf_test.c b/ffs/tests/no_leaf_test.c index cda3212781..3316ccb64e 100644 --- a/ffs/tests/no_leaf_test.c +++ b/ffs/tests/no_leaf_test.c @@ -84,9 +84,7 @@ FMStructDescRec data_struct_list[] = { }; int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { data_struct data; void *encode_buffer, *base_of_encoded_array1, *base_of_encoded_array2; @@ -106,8 +104,8 @@ char **argv; /* setup a test record to play with */ data.s1.x = data.s2.x = data.x = 10; data.s1.y = data.y = 5; - data.s1.array1 = (void*)(0xdeadbeef); /* should get a seg fault if we dereference this */ - data.s2.array2 = (void*)(0xD15EA5E); /* should get a seg fault if we dereference this */ + data.s1.array1 = (void*)(intptr_t)(0xdeadbeef); /* should get a seg fault if we dereference this */ + data.s2.array2 = (void*)(intptr_t)(0xD15EA5E); /* should get a seg fault if we dereference this */ /* register a format so we can do more stuff */ @@ -124,11 +122,11 @@ char **argv; cod_set_return_type("Struct_array1", cod_context); gen_code1 = cod_code_gen("{return encode.s1.array1;}", cod_context); - func1 = (void*(*)(void*)) (long) gen_code1->func; + func1 = (void*(*)(void*)) (intptr_t) gen_code1->func; base_of_encoded_array1 = func1(encode_buffer); gen_code2 = cod_code_gen("{return encode.s2.array2;}", cod_context); - func2 = (void*(*)(void*)) (long) gen_code2->func; + func2 = (void*(*)(void*)) (intptr_t) gen_code2->func; base_of_encoded_array2 = func2(encode_buffer); for (x=0; x < 10; x++) { diff --git a/ffs/tests/test_file_unique.c b/ffs/tests/test_file_unique.c index 1c8c99161c..a7e3b908f2 100644 --- a/ffs/tests/test_file_unique.c +++ b/ffs/tests/test_file_unique.c @@ -35,9 +35,7 @@ file_checksum(char *filename) } int -main(argc,argv) -int argc; -char **argv; +main(int argc, char **argv) { unsigned int base_sum, sum; int i, found_match = 0; diff --git a/ffs/tests/test_funcs.c b/ffs/tests/test_funcs.c index 0f3ebe3af4..abe485022f 100755 --- a/ffs/tests/test_funcs.c +++ b/ffs/tests/test_funcs.c @@ -153,8 +153,7 @@ char *event_vec_xml = "\ \n"; int -first_rec_eq(r1, r2) -first_rec *r1, *r2; +first_rec_eq(first_rec *r1, first_rec *r2) { if (r1->integer_field != r2->integer_field) return 0; @@ -166,8 +165,7 @@ first_rec *r1, *r2; } int -second_rec_eq(r1, r2) -second_rec *r1, *r2; +second_rec_eq(second_rec *r1, second_rec *r2) { if (r1->integer_field != r2->integer_field) { printf("integer_field 1 is %d (0x%x), integer_field 2 is %d (0x%x)\n", @@ -210,8 +208,7 @@ second_rec *r1, *r2; } int -third_rec_eq(r1, r2) -third_rec *r1, *r2; +third_rec_eq(third_rec *r1, third_rec *r2) { if (r1->integer_field != r2->integer_field) { printf("integer field 1 is %d (0x%x), integer_field 2 is %d (0x%x)\n", @@ -285,8 +282,7 @@ third_rec *r1, *r2; #define ARRAY_SIZE 14 int -fourth_rec_eq(r1, r2) -fourth_rec *r1, *r2; +fourth_rec_eq(fourth_rec *r1, fourth_rec *r2) { int i, j; if (r1->ifield != r2->ifield) { @@ -311,8 +307,7 @@ fourth_rec *r1, *r2; } int -emb_rec_eq(r1, r2) -embedded_rec *r1, *r2; +emb_rec_eq(embedded_rec *r1, embedded_rec *r2) { if (r1->ifield != r2->ifield) { printf("ifield 1 is %d (%x), ifield 2 is %d (%x)\n", @@ -343,8 +338,7 @@ embedded_rec *r1, *r2; } int -fifth_rec_eq(r1, r2) -fifth_rec *r1, *r2; +fifth_rec_eq(fifth_rec *r1, fifth_rec *r2) { int i; for (i = 0; i < 4; i++) { @@ -357,8 +351,7 @@ fifth_rec *r1, *r2; } int -sixth_rec_eq(r1, r2) -sixth_rec *r1, *r2; +sixth_rec_eq(sixth_rec *r1, sixth_rec *r2) { int i; if (r1->icount != r2->icount) @@ -403,8 +396,7 @@ sixth_rec *r1, *r2; } int -nested_rec_eq(r1, r2) -nested_rec *r1, *r2; +nested_rec_eq(nested_rec *r1, nested_rec *r2) { if (r1->integer_field != r2->integer_field) { printf("nested, R1 integer = %d, R2 %d\n", r1->integer_field, @@ -434,8 +426,7 @@ nested_rec *r1, *r2; } int -later_rec_eq(r1, r2) -later_rec *r1, *r2; +later_rec_eq(later_rec *r1, later_rec *r2) { if (r1->integer_field != r2->integer_field) return 0; @@ -453,8 +444,7 @@ later_rec *r1, *r2; } int -ninth_rec_eq(r1, r2) -ninth_rec *r1, *r2; +ninth_rec_eq(ninth_rec *r1, ninth_rec *r2) { int i; if (r1->vec_length != r2->vec_length) @@ -473,8 +463,7 @@ ninth_rec *r1, *r2; } int -string_array_eq(r1, r2) -string_array_rec *r1, *r2; +string_array_eq(string_array_rec *r1, string_array_rec *r2) { int i; if (r1->array_len != r2->array_len) @@ -1488,13 +1477,13 @@ init_written_data() reader_pointer_array[0] = malloc(sizeof(struct _cp_init_info)); reader_pointer_array[0]->contact_info = "contact info 1"; reader_pointer_array[0]->target_stone = 101; - reader_pointer_array[0]->reader_ID = (void*)0xdead0001; + reader_pointer_array[0]->reader_ID = (void*)(intptr_t)0xdead0001; reader_pointer_array[1] = malloc(sizeof(struct _cp_init_info)); reader_pointer_array[1]->contact_info = "contact info 2"; reader_pointer_array[1]->target_stone = 102; - reader_pointer_array[1]->reader_ID = (void*)0xdead0002; + reader_pointer_array[1]->reader_ID = (void*)(intptr_t)0xdead0002; - reader_register.writer_file = (void*)0xdeadbeef; + reader_register.writer_file = (void*)(intptr_t)0xdeadbeef; reader_register.writer_response_condition = 13; reader_register.reader_cohort_size = 2; reader_register.CP_reader_info = &reader_pointer_array[0]; diff --git a/ffs/tests/test_funcs.h b/ffs/tests/test_funcs.h index 19cee46832..65075c3af9 100755 --- a/ffs/tests/test_funcs.h +++ b/ffs/tests/test_funcs.h @@ -1,3 +1,12 @@ +#ifdef _MSC_VER +#define strdup(s) _strdup(s) +#define open(x,y,z) _open(x,y,z) +#define read(x,y,z) _read(x,y,z) +#define write(x,y,z) _write(x,y,z) +#define close(x) _close(x) +#define unlink(x) _unlink(x) +#include +#endif typedef struct _newer_rec { int ganzzahl; double gleitkommazahl; diff --git a/ffs/unix_io.c b/ffs/unix_io.c deleted file mode 100755 index a5cac05111..0000000000 --- a/ffs/unix_io.c +++ /dev/null @@ -1,284 +0,0 @@ -#include "config.h" -#include -#include -#include -#include -#include -#ifdef HAVE_MEMORY_H -#include -#endif -#ifdef HAVE_SYS_UIO_H -#include -#define HAVE_IOVEC_DEFINE -#endif -#ifdef HAVE_UNISTD_H -#include -#endif -#include -#include "assert.h" -#include "ffs.h" -#include "fm_internal.h" -#include "ffs_internal.h" -#include "io_interface.h" - -static int -unix_read_func(conn, buffer, length, errno_p, result_p) -void *conn; -void *buffer; -int length; -int *errno_p; -char **result_p; -{ - int left = length; - int iget; - int fd = (int) (long) conn; - - iget = read(fd, (char *) buffer, length); - if (iget == 0) { - if (result_p) *result_p = "End of file"; - if (errno_p) *errno_p = 0; - return 0; /* end of file */ - } else if (iget == -1) { - int lerrno = errno; - if (errno_p) *errno_p = lerrno; - if ((lerrno != EWOULDBLOCK) && - (lerrno != EAGAIN) && - (lerrno != EINTR)) { - /* serious error */ - return -1; - } else { - if (errno_p) *errno_p = 0; - iget = 0; - } - } - left = length - iget; - while (left > 0) { - iget = read(fd, (char *) buffer + length - left, left); - if (iget == 0) { - if (result_p) *result_p = "End of file"; - if (errno_p) *errno_p = 0; - return length - left; /* end of file */ - } else if (iget == -1) { - int lerrno = errno; - if (errno_p) *errno_p = errno; - if ((lerrno != EWOULDBLOCK) && - (lerrno != EAGAIN) && - (lerrno != EINTR)) { - /* serious error */ - return (length - left); - } else { - if (errno_p) *errno_p = 0; - iget = 0; - } - } - left -= iget; - } - return length; -} - -static int -unix_readv_func(conn, iov, icount, errno_p, result_p) -void *conn; -struct iovec *iov; -int icount; -int *errno_p; -char **result_p; -{ - int orig_icount = icount; - int fd = (int) (long)conn; - int iget; - - while (icount > 0) { - iget = readv(fd, (struct iovec *) iov, icount); - if (iget == 0) { - if (result_p) *result_p = "End of file"; - if (errno_p) *errno_p = 0; - return 0; /* end of file */ - } else if (iget == -1) { - if (errno_p) *errno_p = errno; - if ((errno != EWOULDBLOCK) && - (errno != EAGAIN) && - (errno != EINTR)) { - /* serious error */ - return -1; - } else { - if (errno_p) *errno_p = 0; - iget = 0; - } - } - while (iget > 0) { - if (iov[0].iov_len <= iget) { - iget -= iov[0].iov_len; - iov++; - icount--; - } else { - iov[0].iov_len -= iget; - iov[0].iov_base = ((char*)iov[0].iov_base) + iget; - iget = 0; - } - } - } - return orig_icount; -} - -static int -unix_write_func(conn, buffer, length, errno_p, result_p) -void *conn; -void *buffer; -int length; -int *errno_p; -char **result_p; -{ - int left = length; - int iget = 0; - int fd = (int) (long)conn; - - while (left > 0) { - iget = write(fd, (char *) buffer + length - left, left); - if (iget == -1) { - int lerrno = errno; - if (errno_p) *errno_p = errno; - if ((lerrno != EWOULDBLOCK) && - (lerrno != EAGAIN) && - (lerrno != EINTR)) { - /* serious error */ - return (length - left); - } else { - if (errno_p) *errno_p = 0; - iget = 0; - } - } - left -= iget; - } - return length; -} - -static int -unix_writev_func(conn, iov, iovcnt, errno_p, result_p) -void *conn; -struct iovec *iov; -int iovcnt; -int *errno_p; -char **result_p; -{ - int fd = (int) (long) conn; - int left = 0; - int iget = 0; - int iovleft, i; - - iovleft = iovcnt; - - /* sum lengths */ - for (i=0; i 0) { - iget = writev(fd, (struct iovec *) &iov[iovcnt - iovleft], iovleft); - if (iget == -1) { - if ((errno != EWOULDBLOCK) && (errno != EAGAIN)) { - /* serious error */ - if (errno_p) *errno_p = errno; - return (iovcnt - iovleft); - } else { - iget = 0; - } - } - if (iget == left) - return iovcnt; - - left -= iget; - while (iget > 0) { - iget -= iov[iovcnt - iovleft].iov_len; - iovleft--; - } - - if (iget < 0) { - /* - * Only part of the last block was written. Modify IO - * vector to indicate the remaining block to be written. - */ - /* restore iovleft and iget to cover remaining block*/ - iovleft++; - iget += iov[iovcnt - iovleft].iov_len; - - /* adjust count down and base up by number of bytes written */ - iov[iovcnt-iovleft].iov_len -= iget; - iov[iovcnt-iovleft].iov_base = - (char*)(iov[iovcnt-iovleft].iov_base) + iget; - } - } - return iovcnt; -} - -static int -unix_close_func(conn) -void *conn; -{ - return close((int) (long) conn); -} - -static void * -unix_file_open_func(path, flag_str, input, output) -const char *path; -const char *flag_str; -int *input; -int *output; -{ - int flags; - int file_id; - long tmp_flags = (long)flag_str; - if (input) *input = 0; - if (output) *output = 0; - - tmp_flags &= ~(O_TRUNC); - tmp_flags &= ~(O_CREAT); - if ((O_RDONLY == tmp_flags) || - (O_WRONLY == tmp_flags)) { - /* must be old style call */ - flags = (long)flag_str; - if (input) *input = (O_RDONLY == (long)flag_str); - if (output) *output = (O_WRONLY & (long)flag_str); - } else { - if (strcmp(flag_str, "r") == 0) { - flags = O_RDONLY; - if (input) *input = 1; - } else if (strcmp(flag_str, "w") == 0) { - flags = O_WRONLY | O_CREAT | O_TRUNC; - if (output) *output = 1; - } else if (strcmp(flag_str, "a") == 0) { - flags = O_RDWR; - if (output) *output = 1; - if (input) *input = 1; - } else { - fprintf(stderr, "Open flags value not understood for file \"%s\"\n", - path); - return NULL; - } - } - file_id = open(path, flags, 0777); - if (file_id == -1) { - return NULL; - } else { - return (void*) (long) file_id; - } -} - - - -IOinterface_func ffs_file_read_func = unix_read_func; -IOinterface_func ffs_file_write_func = unix_write_func; -IOinterface_funcv ffs_file_readv_func = unix_readv_func; -IOinterface_funcv ffs_file_writev_func = unix_writev_func; - -IOinterface_func ffs_read_func = unix_read_func; -IOinterface_func ffs_write_func = unix_write_func; -IOinterface_funcv ffs_readv_func = unix_readv_func; -IOinterface_funcv ffs_writev_func = unix_writev_func; -#ifndef IOV_MAX -#define IOV_MAX 16 -#endif -int ffs_max_iov = IOV_MAX; -IOinterface_close ffs_close_func = unix_close_func; -IOinterface_open ffs_file_open_func = unix_file_open_func; -IOinterface_func ffs_server_read_func = unix_read_func; -IOinterface_func ffs_server_write_func = unix_write_func; -IOinterface_init ffs_sockets_init_func = NULL; diff --git a/fm/fm.h b/fm/fm.h index 185c76bff9..cba86f288a 100755 --- a/fm/fm.h +++ b/fm/fm.h @@ -4,14 +4,23 @@ #if defined(__cplusplus) || defined(c_plusplus) extern "C" { #endif +#include +#include + typedef struct _FMContextStruct *FMContext; -extern FMContext create_FMcontext(); -extern FMContext create_local_FMcontext(); -extern void free_FMcontext(FMContext c); -extern void add_ref_FMcontext(); -extern void FMcontext_allow_self_formats(FMContext fmc); -extern int +#if defined(_MSC_VER) && !defined(FFS_SRC) +#define FFS_DECLSPEC __declspec(dllimport) +#else +#define FFS_DECLSPEC +#endif + +extern FFS_DECLSPEC FMContext create_FMcontext(); +extern FFS_DECLSPEC FMContext create_local_FMcontext(); +extern FFS_DECLSPEC void free_FMcontext(FMContext c); +extern FFS_DECLSPEC void add_ref_FMcontext(FMContext c); +extern FFS_DECLSPEC void FMcontext_allow_self_formats(FMContext fmc); +extern FFS_DECLSPEC int FMcontext_get_format_server_identifier(FMContext fmc); @@ -76,19 +85,19 @@ typedef enum { typedef struct _FMFormatBody *FMFormatBodyPtr; typedef FMFormatBodyPtr FMFormat; -extern char * +extern FFS_DECLSPEC char * get_server_rep_FMformat(FMFormat ioformat, int *rep_length); -extern char * +extern FFS_DECLSPEC char * get_server_ID_FMformat(FMFormat ioformat, int *id_length); -extern FMContext +extern FFS_DECLSPEC FMContext FMContext_from_FMformat(FMFormat ioformat); -extern int +extern FFS_DECLSPEC int get_rep_len_format_ID(void *format_ID); -extern void +extern FFS_DECLSPEC void set_array_order_FMContext(FMContext iofile, int column_major); FMFormat @@ -100,23 +109,23 @@ FMformat_index(FMFormat f); FMFormat FMformat_by_index(FMContext c, int index); -extern FMFormat +extern FFS_DECLSPEC FMFormat load_external_format_FMcontext(FMContext iocontext, char *server_id, int id_size, char *server_rep); -extern void +extern FFS_DECLSPEC void add_opt_info_FMformat(FMFormat format, int typ, int len, void *block); -extern FMFormat +extern FFS_DECLSPEC FMFormat FMregister_simple_format(FMContext context, char *format_name, FMFieldList field_list, int struct_size); -extern FMFormat +extern FFS_DECLSPEC FMFormat register_data_format(FMContext context, FMStructDescList struct_list); -extern FMFormat +extern FFS_DECLSPEC FMFormat FMregister_data_format(FMContext context, FMStructDescList struct_list); -extern void free_FMfield_list(FMFieldList list); +extern FFS_DECLSPEC void free_FMfield_list(FMFieldList list); /*! * lookup the FMFormat associated with a particular FMStructDescList @@ -139,7 +148,7 @@ extern void free_FMfield_list(FMFieldList list); * address. Normally if you use static format lists, the addresses will * be unique. */ -extern FMFormat +extern FFS_DECLSPEC FMFormat FMlookup_format(FMContext context, FMStructDescList struct_list); typedef enum {Format_Less, Format_Greater, Format_Equal, @@ -152,125 +161,125 @@ typedef struct compat_formats { char *xform_code; } *FMcompat_formats; -extern FMcompat_formats +extern FFS_DECLSPEC FMcompat_formats FMget_compat_formats(FMFormat ioformat); -extern char * +extern FFS_DECLSPEC char * name_of_FMformat(FMFormat format); -extern FMStructDescList +extern FFS_DECLSPEC FMStructDescList format_list_of_FMFormat(FMFormat format); -extern void +extern FFS_DECLSPEC void FMlocalize_structs(FMStructDescList list); -extern char * +extern FFS_DECLSPEC char * global_name_of_FMFormat(FMFormat format); -extern FMFieldList +extern FFS_DECLSPEC FMFieldList copy_field_list(FMFieldList list); -extern FMStructDescList +extern FFS_DECLSPEC FMStructDescList FMcopy_struct_list(FMStructDescList list); -extern void +extern FFS_DECLSPEC void FMfree_struct_list(FMStructDescList list); -extern int +extern FFS_DECLSPEC int FMstruct_size_field_list(FMFieldList list, int pointer_size); -extern FMStructDescList +extern FFS_DECLSPEC FMStructDescList FMlocalize_formats(FMStructDescList list); -extern int +extern FFS_DECLSPEC int count_FMfield(FMFieldList list); -extern void print_server_ID(unsigned char *ID); -extern void print_format_ID(FMFormat ioformat); -extern void fprint_server_ID(void * file,unsigned char *ID); +extern FFS_DECLSPEC void print_server_ID(unsigned char *ID); +extern FFS_DECLSPEC void print_format_ID(FMFormat ioformat); +extern FFS_DECLSPEC void fprint_server_ID(void * file,unsigned char *ID); -extern int FMformatID_len(char *buffer); +extern FFS_DECLSPEC int FMformatID_len(char *buffer); -extern int +extern FFS_DECLSPEC int FMdump_data(FMFormat format, void *data, int character_limit); -extern int +extern FFS_DECLSPEC int FMdump_encoded_data(FMFormat format, void *data, int character_limit); -extern void +extern FFS_DECLSPEC void FMdump_XML(FMFormat format, void *data, int encoded); -extern void +extern FFS_DECLSPEC void FMdump_encoded_XML(FMContext c, void *data, int character_limit); -extern int +extern FFS_DECLSPEC int FMfdump_data(void *file, FMFormat format, void *data, int character_limit); -extern int +extern FFS_DECLSPEC int FMfdump_encoded_data(void *file, FMFormat format, void *data, int character_limit); -extern void +extern FFS_DECLSPEC void FMfdump_XML(void *file, FMFormat format, void *data, int encoded); -extern void +extern FFS_DECLSPEC void FMfdump_encoded_XML(void *file, FMContext c, void *data, int character_limit); -extern char* +extern FFS_DECLSPEC char* FMunencoded_to_XML_string(FMContext fmcontext, FMFormat format, void *data); -extern void +extern FFS_DECLSPEC void FMfree_var_rec_elements(FMFormat format, void *data); -extern char *FMbase_type(const char *field_type); +extern FFS_DECLSPEC char *FMbase_type(const char *field_type); #define XML_OPT_INFO 0x584D4C20 #define COMPAT_OPT_INFO 0x45564F4C #define COMPAT_OPT_INFO_FMFILE 0x45564F4D typedef struct _FMgetFieldStruct *FMFieldPtr; -extern FMFieldPtr get_FMfieldPtrFromList(FMFieldList field_list, +extern FFS_DECLSPEC FMFieldPtr get_FMfieldPtrFromList(FMFieldList field_list, const char *fieldname); -extern void * +extern FFS_DECLSPEC void * get_FMfieldAddr_by_name(FMFieldList field_list, const char *fieldname, void *data); -extern void * +extern FFS_DECLSPEC void * get_FMPtrField_by_name(FMFieldList field_list, const char *fieldname, void *data, int encode); -extern int +extern FFS_DECLSPEC int set_FMPtrField_by_name(FMFieldList field_list, const char *fieldname, void *data, void *ptr_value); -extern int +extern FFS_DECLSPEC int get_FMfieldInt_by_name(FMFieldList field_list, const char *fieldname, void *data); -extern long +extern FFS_DECLSPEC size_t get_FMfieldLong_by_name(FMFieldList field_list, const char *fieldname, void *data); -extern void * FMheader_skip(FMContext c, void *data); -extern char *get_FMstring_base(FMFieldPtr iofield, void *data, void *string_base); -extern void *get_FMFieldAddr(FMFieldPtr iofield, void *data); -extern void *get_FMaddr (FMFieldPtr iofield, void *data, void *string_base, int encode); -extern void *put_FMaddr (FMFieldPtr iofield, void *data); -extern float get_FMfloat(FMFieldPtr iofield, void *data); -extern double get_FMdouble(FMFieldPtr iofield, void *data); -extern short get_FMshort(FMFieldPtr iofield, void *data); -extern int get_FMint(FMFieldPtr iofield, void *data); -extern long get_FMlong(FMFieldPtr iofield, void *data); -extern void get_FMlong8(FMFieldPtr iofield, void *data, unsigned long *low_long, long *high_long); +extern FFS_DECLSPEC void * FMheader_skip(FMContext c, void *data); +extern FFS_DECLSPEC char *get_FMstring_base(FMFieldPtr iofield, void *data, void *string_base); +extern FFS_DECLSPEC void *get_FMFieldAddr(FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC void *get_FMaddr (FMFieldPtr iofield, void *data, void *string_base, int encode); +extern FFS_DECLSPEC void *put_FMaddr (FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC float get_FMfloat(FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC double get_FMdouble(FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC short get_FMshort(FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC int get_FMint(FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC size_t get_FMlong(FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC void get_FMlong8(FMFieldPtr iofield, void *data, unsigned long *low_long, long *high_long); #if defined(SIZEOF_LONG_LONG) #if SIZEOF_LONG_LONG != 0 -extern long long get_FMlong_long(FMFieldPtr iofield, void *data); -extern unsigned long long get_FMulong_long(FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC long long get_FMlong_long(FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC unsigned long long get_FMulong_long(FMFieldPtr iofield, void *data); #endif #endif #if defined(SIZEOF_LONG_DOUBLE) #if SIZEOF_LONG_DOUBLE != 0 -extern long double get_FMlong_double(FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC long double get_FMlong_double(FMFieldPtr iofield, void *data); #endif #endif -extern unsigned short get_FMushort(FMFieldPtr iofield, void *data); -extern unsigned int get_FMuint(FMFieldPtr iofield, void *data); -extern unsigned long get_FMulong(FMFieldPtr iofield, void *data); -extern int get_FMulong8(FMFieldPtr iofield, void *data, unsigned long *low_long, unsigned long *high_long); -extern char *get_FMstring(FMFieldPtr iofield, void *data); -extern char get_FMchar(FMFieldPtr iofield, void *data); -extern int get_FMenum(FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC unsigned short get_FMushort(FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC unsigned int get_FMuint(FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC size_t get_FMulong(FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC int get_FMulong8(FMFieldPtr iofield, void *data, unsigned long *low_long, unsigned long *high_long); +extern FFS_DECLSPEC char *get_FMstring(FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC char get_FMchar(FMFieldPtr iofield, void *data); +extern FFS_DECLSPEC int get_FMenum(FMFieldPtr iofield, void *data); #if defined(__cplusplus) || defined(c_plusplus) } diff --git a/fm/fm_dump.c b/fm/fm_dump.c index 28ca42a73e..2c77715be3 100644 --- a/fm/fm_dump.c +++ b/fm/fm_dump.c @@ -14,7 +14,7 @@ #include #include #include -#include +#include #include "assert.h" #include "fm.h" #include "fm_internal.h" @@ -30,13 +30,13 @@ extern FMfloat_format fm_my_float_format; typedef struct addr_list { void *addr; - int offset; + size_t offset; } addr_list_entry; typedef struct dump_state { int encoded; - int output_len; - int output_limit; + size_t output_len; + ssize_t output_limit; int use_XML; int indent; char *offset_base; @@ -54,14 +54,12 @@ typedef struct dump_state { }*dstate; static void free_addr_list(dstate s); -static int search_addr_list(dstate s, void *addr); -static void add_to_addr_list(dstate s, void *addr, int offset); -static int dump_subfields(void *base, FMFormat f, dstate s, int data_offset); +static ssize_t search_addr_list(dstate s, void *addr); +static void add_to_addr_list(dstate s, void *addr, size_t offset); +static int dump_subfields(void *base, FMFormat f, dstate s, size_t data_offset); static void -byte_swap(data, size) -char *data; -int size; +byte_swap(char *data, int size) { int i; assert((size % 2) == 0); @@ -73,7 +71,7 @@ int size; } extern int -dump_output(dstate s, int length_estimate, char *format, ...) +dump_output(dstate s, size_t length_estimate, char *format, ...) { char buf[1024]; char *tmp = &buf[0]; @@ -81,7 +79,7 @@ dump_output(dstate s, int length_estimate, char *format, ...) int free_tmp = 0; int use_buf = 1; if ((s->output_limit != -1) && - (s->output_len + length_estimate > s->output_limit)) { + (s->output_len + length_estimate > (size_t)s->output_limit)) { return 0; } if (s->output_string != NULL) { @@ -100,7 +98,7 @@ dump_output(dstate s, int length_estimate, char *format, ...) #else va_start(ap); #endif - vsprintf(tmp, format, ap); + vsnprintf(tmp, sizeof(buf), format, ap); va_end(ap); s->output_len += strlen(tmp); if (s->use_file_out) { @@ -125,14 +123,13 @@ set_bigendian () { words_bigendian = (u.c[sizeof (long) - 1] == 1); return words_bigendian; } - +#ifndef WORDS_BIGENDIAN #define WORDS_BIGENDIAN ((words_bigendian == -1) ? set_bigendian() : words_bigendian) #endif +#endif static unsigned long -quick_get_ulong(iofield, data) -FMFieldPtr iofield; -void *data; +quick_get_ulong(FMFieldPtr iofield, void *data) { data = (void *) ((char *) data + iofield->offset); /* only used when field type is an integer and aligned by its size */ @@ -169,9 +166,7 @@ void *data; } static void * -quick_get_pointer(field, data) -FMFieldPtr field; -void *data; +quick_get_pointer(FMFieldPtr field, void *data) { union { void *p; @@ -239,20 +234,13 @@ static int internal_dump_data(FMFormat format, void *data, dstate state); extern int -FMdump_data(format, data, character_limit) -FMFormat format; -void *data; -int character_limit; +FMdump_data(FMFormat format, void *data, int character_limit) { return FMfdump_data(stdout, format, data, character_limit); } extern int -FMfdump_data(out, format, data, character_limit) -void *out; -FMFormat format; -void *data; -int character_limit; +FMfdump_data(void *out, FMFormat format, void *data, int character_limit) { int ret; struct dump_state state; @@ -288,7 +276,7 @@ internal_dump_data(FMFormat format, void *data, dstate state) } static int -dump_subfield(void *base, FMFormat f, dstate s, int data_offset, void* parent_base, FMTypeDesc *t); +dump_subfield(void *base, FMFormat f, dstate s, size_t data_offset, void* parent_base, FMTypeDesc *t); #define FALSE 0 #define TRUE 1 @@ -356,12 +344,12 @@ stop_field(dstate s, FMFieldList f, FMTypeDesc *t) } static int -dump_subfields(void *base, FMFormat f, dstate s, int data_offset) +dump_subfields(void *base, FMFormat f, dstate s, size_t data_offset) { int i; for (i = 0; i < f->field_count; i++) { - int subfield_offset = data_offset + f->field_list[i].field_offset; + size_t subfield_offset = data_offset + f->field_list[i].field_offset; FMFieldList fmfield = &f->field_list[i]; int ret; start_field(s, fmfield, &f->var_list[i].type_desc); @@ -370,7 +358,7 @@ dump_subfields(void *base, FMFormat f, dstate s, int data_offset) &f->var_list[i].type_desc); stop_field(s, fmfield, &f->var_list[i].type_desc); if (ret != 1) return 0; - if ((s->output_limit != -1) && (s->output_len >= s->output_limit)) return 0; + if ((s->output_limit != -1) && (s->output_len >= (size_t)s->output_limit)) return 0; } return 1; } @@ -414,18 +402,8 @@ determine_dump_size(FMFormat f, void *data, void* parent_base, FMTypeDesc *t) static int -sdump_value(s, field_type, field_size, field_offset, top_format, data, - string_base, byte_reversal, float_format, encode) -dstate s; -const char *field_type; -int field_size; -int field_offset; -FMFormat top_format; -void *data; -void *string_base; -int byte_reversal; -int float_format; -int encode; +sdump_value(dstate s, const char *field_type, int field_size, size_t field_offset, FMFormat top_format, + void *data, void *string_base, int byte_reversal, int float_format, int encode) { FMgetFieldStruct descr; /*OK */ long junk; @@ -438,7 +416,7 @@ int encode; if (descr.data_type == integer_type) { if (field_size <= sizeof(long)) { - long tmp = get_FMlong(&descr, data); + size_t tmp = get_FMlong(&descr, data); dump_output(s, 25, "%ld ", tmp); } else if (field_size == 2 * sizeof(long) && field_size == 8) { unsigned long low_long; @@ -456,7 +434,7 @@ int encode; } } else if (descr.data_type == unsigned_type) { if (field_size <= sizeof(unsigned long)) { - unsigned long tmp = get_FMulong(&descr, data); + ssize_t tmp = get_FMulong(&descr, data); dump_output(s, 25, "%lu ", tmp); } else if (field_size == 2 * sizeof(long) && field_size == 8) { unsigned long low_long, high_long; @@ -472,10 +450,10 @@ int encode; dump_output(s, 20, "+uint size %u+ ", field_size); } } else if (descr.data_type == enumeration_type) { - unsigned long tmp = get_FMulong(&descr, data); + size_t tmp = get_FMulong(&descr, data); dump_output(s, 25, "%lu ", tmp); } else if (descr.data_type == boolean_type) { - unsigned long tmp = get_FMulong(&descr, data); + size_t tmp = get_FMulong(&descr, data); dump_output(s, 25, "%lu ", tmp); if (tmp == 0) { dump_output(s, 5, "false "); @@ -525,16 +503,16 @@ int encode; } static int -dump_subfield(void*base, FMFormat f, dstate s, int data_offset, void* parent_base, FMTypeDesc *t) +dump_subfield(void*base, FMFormat f, dstate s, size_t data_offset, void* parent_base, FMTypeDesc *t) { - if ((s->output_limit != -1) && (s->output_len > s->output_limit)) return 0; + if ((s->output_limit != -1) && (s->output_len > (size_t)s->output_limit)) return 0; switch (t->type) { case FMType_pointer: { struct _FMgetFieldStruct src_spec; - int new_offset; + size_t new_offset; char *ptr_value; memset(&src_spec, 0, sizeof(src_spec)); src_spec.size = f->pointer_size; @@ -550,16 +528,16 @@ dump_subfield(void*base, FMFormat f, dstate s, int data_offset, void* parent_bas #if defined (__INTEL_COMPILER) # pragma warning (disable: 810) #endif - new_offset = (long) ptr_value; + new_offset = (intptr_t) ptr_value; #if defined (__INTEL_COMPILER) # pragma warning (default: 810) #endif - ptr_value = (long)ptr_value + s->offset_base; + ptr_value = (intptr_t)ptr_value + s->offset_base; } else { - new_offset = ptr_value - s->offset_base; + new_offset = (intptr_t)ptr_value - (intptr_t)s->offset_base; } if (f->recursive) { - int previous_offset = search_addr_list(s, ptr_value); + ssize_t previous_offset = search_addr_list(s, ptr_value); if (previous_offset != -1) { /* already visited this */ return 1; @@ -583,7 +561,7 @@ dump_subfield(void*base, FMFormat f, dstate s, int data_offset, void* parent_bas dump_output(s, 5, "NULL "); } else { if (s->encoded) { - ptr_value = (long)ptr_value + s->offset_base; + ptr_value = (intptr_t)ptr_value + s->offset_base; } dump_output(s, strlen(ptr_value) + 2, "\"%s\"", ptr_value); } @@ -610,7 +588,7 @@ dump_subfield(void*base, FMFormat f, dstate s, int data_offset, void* parent_bas } element_size = determine_dump_size(f, base, parent_base, next); for (i = 0; i < elements ; i++) { - int element_offset = data_offset + i * element_size; + size_t element_offset = data_offset + i * element_size; if (!dump_subfield(base, f, s, element_offset, parent_base, next)) return 0; } break; @@ -628,7 +606,7 @@ dump_subfield(void*base, FMFormat f, dstate s, int data_offset, void* parent_bas } case FMType_simple: { FMFieldList fmfield = &f->field_list[t->field_index]; - int field_offset = data_offset; + size_t field_offset = data_offset; int field_size = fmfield->field_size; const char *field_type = fmfield->field_type; int byte_reversal = f->byte_reversal; @@ -644,7 +622,7 @@ dump_subfield(void*base, FMFormat f, dstate s, int data_offset, void* parent_bas } static void -add_to_addr_list(dstate s, void *addr, int offset) +add_to_addr_list(dstate s, void *addr, size_t offset) { if (s->addr_list_is_stack) { if (s->addr_list_cnt == STACK_ARRAY_SIZE) { @@ -669,11 +647,11 @@ add_to_addr_list(dstate s, void *addr, int offset) s->addr_list_cnt++; } -static int +static ssize_t search_addr_list(dstate s, void *addr) { int i; - int previous_offset = -1; + ssize_t previous_offset = -1; for (i=0; i < s->addr_list_cnt; i++) { if (s->addr_list[i].addr == addr) { previous_offset = s->addr_list[i].offset; @@ -692,10 +670,7 @@ free_addr_list(dstate s) } extern int -dump_raw_FMrecord(fmc,format, data) -FMContext fmc; -FMFormat format; -void *data; +dump_raw_FMrecord(FMContext fmc, FMFormat format, void *data) { struct dump_state state; init_dump_state(&state); @@ -710,10 +685,7 @@ void *data; } extern char * -dump_raw_FMrecord_to_string(fmc,format, data) -FMContext fmc; -FMFormat format; -void *data; +dump_raw_FMrecord_to_string(FMContext fmc, FMFormat format, void *data) { struct dump_state state; init_dump_state(&state); @@ -731,11 +703,7 @@ void *data; } extern int -FMfdump_encoded_data(out, format, data, character_limit) -void *out; -FMFormat format; -void *data; -int character_limit; +FMfdump_encoded_data(void *out, FMFormat format, void *data, int character_limit) { int ret; int header_size = format->server_ID.length; @@ -762,10 +730,7 @@ int character_limit; } extern int -FMdump_encoded_data(format, data, character_limit) -FMFormat format; -void *data; -int character_limit; +FMdump_encoded_data(FMFormat format, void *data, int character_limit) { return FMfdump_encoded_data((void*)stdout, format, data, character_limit); } @@ -826,10 +791,7 @@ FMdump_encoded_XML(FMContext c, void *data, int limit) } extern void -dump_unencoded_FMrecord_as_XML(fmc, format, data) -FMContext fmc; -FMFormat format; -void *data; +dump_unencoded_FMrecord_as_XML(FMContext fmc, FMFormat format, void *data) { struct dump_state state; if (FMhas_XML_info(format)) { diff --git a/fm/fm_formats.c b/fm/fm_formats.c index ca3f3dee83..83414a45a5 100755 --- a/fm/fm_formats.c +++ b/fm/fm_formats.c @@ -34,7 +34,7 @@ #include #include #include -#include +#include #else #include "kernel/pbio_kernel.h" #include "kernel/kpbio.h" @@ -44,6 +44,9 @@ #include "assert.h" #include "fm.h" #include "fm_internal.h" +#if defined(_MSC_VER) +#define strdup _strdup +#endif static int server_register_format(FMContext fmc, FMFormat fmformat); static int self_server_register_format(FMContext fmc, @@ -200,8 +203,7 @@ create_local_FMcontext() } static void -free_FMformat(body) -FMFormat body; +free_FMformat(FMFormat body) { int i; body->ref_count--; @@ -295,11 +297,7 @@ FMformatID_len(char *buffer) } extern void -add_opt_info_FMformat(format, typ, len, block) -FMFormat format; -int typ; -int len; -void *block; +add_opt_info_FMformat(FMFormat format, int typ, int len, void *block) { int count = 0; if (format->opt_info == NULL) { @@ -385,15 +383,13 @@ FMget_compat_formats(FMFormat fmformat) } FMFormat -get_local_format_IOcontext(iocontext, buffer) -FMContext iocontext; -void *buffer; +get_local_format_IOcontext(FMContext iocontext, void *buffer) { FMContext fmc = (FMContext) iocontext; int i; if (get_format_server_verbose()) { - printf("Get Format searching in context %lx for format ", - (long)iocontext); + printf("Get Format searching in context %p for format ", + iocontext); print_server_ID(buffer); printf("\n"); } @@ -459,9 +455,7 @@ void *buffer; } FMFormat -FMformat_from_ID(iocontext, buffer) -FMContext iocontext; -char *buffer; +FMformat_from_ID(FMContext iocontext, char *buffer) { FMContext fmc = (FMContext) iocontext; FMFormat new_format; @@ -532,22 +526,21 @@ char *buffer; new_format = server_get_format(iocontext, buffer); } if (get_format_server_verbose()) { - printf("Read format from format server %lx\n", - (long)new_format); + printf("Read format from format server %p\n", + new_format); if (new_format != NULL) { dump_FMFormat(new_format); } else { printf("Format unknown. Request was: "); print_server_ID((void*)buffer); - printf("\n\tcontext was %lx\n", (long)iocontext); + printf("\n\tcontext was %p\n", iocontext); } } return new_format; } char ** -get_subformat_names(field_list) -FMFieldList field_list; +get_subformat_names(FMFieldList field_list) { int name_count = 0; int field = 0; @@ -573,11 +566,8 @@ FMFieldList field_list; static void -get_subformats_context(fmformat, format_list_p, format_count_p, stack_p) -FMFormat fmformat; -FMFormat **format_list_p; -int *format_count_p; -FMFormat **stack_p; +get_subformats_context(FMFormat fmformat, FMFormat **format_list_p, int *format_count_p, + FMFormat **stack_p) { int field; int stack_depth = 0; @@ -614,8 +604,7 @@ FMFormat **stack_p; } FMFormat * -get_subformats_IOformat(fmformat) -FMFormat fmformat; +get_subformats_IOformat(FMFormat fmformat) { int format_count = 0; FMFormat *format_list = malloc(sizeof(FMFormat)); @@ -636,9 +625,7 @@ FMformat_index(FMFormat f) } FMFormat -FMformat_by_index(fmc, index) -FMContext fmc; -int index; +FMformat_by_index(FMContext fmc, int index) { if (index < fmc->reg_format_count) { return fmc->format_list[index]; @@ -680,8 +667,7 @@ new_FMFormat() extern void -expand_FMContext(fmc) -FMContext fmc; +expand_FMContext(FMContext fmc) { int new_count = fmc->format_list_size + 10; int new_size = sizeof(FMFormat) * (new_count); @@ -899,9 +885,7 @@ typedef struct { } *sld; static int -type_alignment(fmformat, field) -FMFormat fmformat; -int field; +type_alignment(FMFormat fmformat, int field) { FMVarInfoList var = &fmformat->var_list[field]; FMTypeDesc *t = &var->type_desc; @@ -1192,8 +1176,7 @@ gen_var_dimens(FMFormat fmformat, int field) } extern void -set_alignment(fmformat) -FMFormat fmformat; +set_alignment(FMFormat fmformat) { int field_align; int field; @@ -1208,9 +1191,7 @@ FMFormat fmformat; extern int -generate_var_list(fmformat, formats) -FMFormat fmformat; -FMFormat *formats; +generate_var_list(FMFormat fmformat, FMFormat *formats) { FMVarInfoList new_var_list; FMFieldList field_list = fmformat->field_list; @@ -1278,19 +1259,16 @@ FMFormat *formats; } static format_rep -add_server_subformat_rep(fmformat, super_rep, super_rep_size) -FMFormat fmformat; -char *super_rep; -int *super_rep_size; +add_server_subformat_rep(FMFormat fmformat, char *super_rep, size_t *super_rep_size) { int byte_reversal = fmformat->byte_reversal; - int rep_size = (sizeof(struct _field_wire_format_1) * + size_t rep_size = (sizeof(struct _field_wire_format_1) * (fmformat->field_count)); int i; int opt_info_count = 0; struct _subformat_wire_format *rep; char *string_base; - int cur_offset; + ssize_t cur_offset; struct _field_wire_format_1 *fields; int OUR_BYTE_ORDER = WORDS_BIGENDIAN; int OTHER_BYTE_ORDER = (WORDS_BIGENDIAN ? 0 : 1); @@ -1303,11 +1281,11 @@ int *super_rep_size; rep_size += sizeof(struct _subformat_wire_format_1); - rep_size = (rep_size + 3) & -4; /* round up by even 4 */ + rep_size = (rep_size + 3) & (size_t)-4; /* round up by even 4 */ while (fmformat->opt_info && (fmformat->opt_info[opt_info_count].info_type != 0)) { rep_size += fmformat->opt_info[opt_info_count].info_len; - rep_size = (rep_size + 3) & -4; /* round up by even 4 */ + rep_size = (rep_size + 3) & (size_t)-4; /* round up by even 4 */ opt_info_count++; } rep_size += (opt_info_count + 1) * sizeof(struct _opt_info_wire_format); @@ -1327,7 +1305,7 @@ int *super_rep_size; string_base = (char *) rep; - rep->f.f1.name_offset = cur_offset; + rep->f.f1.name_offset = (unsigned int)cur_offset; if (byte_reversal) byte_swap((char*) &rep->f.f1.name_offset, 4); strcpy(string_base + cur_offset, fmformat->format_name); cur_offset += strlen(fmformat->format_name) + 1; @@ -1348,12 +1326,12 @@ int *super_rep_size; if (byte_reversal) byte_swap((char*) &fields[i].field_size, 4); fields[i].field_offset = fmformat->field_list[i].field_offset; if (byte_reversal) byte_swap((char*) &fields[i].field_offset, 4); - fields[i].field_name_offset = cur_offset; + fields[i].field_name_offset = (unsigned int)cur_offset; if (byte_reversal) byte_swap((char*) &fields[i].field_name_offset, 4); strcpy(string_base + cur_offset, fmformat->field_list[i].field_name); cur_offset += strlen(fmformat->field_list[i].field_name) + 1; - fields[i].field_type_offset = cur_offset; + fields[i].field_type_offset = (unsigned int) cur_offset; if (byte_reversal) byte_swap((char*) &fields[i].field_type_offset, 4); strcpy(string_base + cur_offset, fmformat->field_list[i].field_type); @@ -1368,7 +1346,7 @@ int *super_rep_size; *(string_base + cur_offset++) = 0; } rep->f.f1.opt_info_offset = cur_offset & 0xffff; - rep->f.f1.top_bytes_opt_info_offset = cur_offset >> 16; + rep->f.f1.top_bytes_opt_info_offset = (unsigned short)(cur_offset >> 16); if (byte_reversal) byte_swap((char*) &rep->f.f1.opt_info_offset, 2); if (byte_reversal) byte_swap((char*) &rep->f.f1.top_bytes_opt_info_offset, 2); info_base = cur_offset +string_base; @@ -1387,7 +1365,7 @@ int *super_rep_size; if (byte_reversal) byte_swap((char*) &tmp_base.info_type, 4); tmp_base.info_len = fmformat->opt_info[i].info_len; if (byte_reversal) byte_swap((char*) &tmp_base.info_len, 4); - tmp_base.info_offset = cur_offset; + tmp_base.info_offset = (int) cur_offset; if (byte_reversal) byte_swap((char*) &tmp_base.info_offset, 4); memcpy(info_base + i*sizeof(tmp_base), &tmp_base, sizeof(tmp_base)); memcpy(string_base + cur_offset, @@ -1404,21 +1382,20 @@ int *super_rep_size; *(string_base + cur_offset++) = 0; } assert(cur_offset == rep_size); - rep->f.f1.subformat_rep_length = htons(rep_size); - rep->f.f1.top_bytes_subformat_rep_length = htons(rep_size>>16); + rep->f.f1.subformat_rep_length = htons((short)rep_size); + rep->f.f1.top_bytes_subformat_rep_length = htons((short)(rep_size>>16)); *super_rep_size += rep_size; return (format_rep) super_rep; } static format_rep -build_server_format_rep(fmformat) -FMFormat fmformat; +build_server_format_rep(FMFormat fmformat) { int subformat_count = 0; FMFormat *subformats = fmformat->subformats; int i; struct _format_wire_format *rep = malloc(sizeof(*rep)); - int rep_size = sizeof(*rep); + size_t rep_size = sizeof(*rep); int OUR_BYTE_ORDER = WORDS_BIGENDIAN; int OTHER_BYTE_ORDER = (WORDS_BIGENDIAN ? 0 : 1); @@ -1438,7 +1415,7 @@ FMFormat fmformat; rep->f.f1.server_rep_version = 2; rep->f.f1.subformat_count = subformat_count; rep->f.f1.recursive_flag = 0; /* GSE must set right */ - rep->f.f1.top_bytes_format_rep_length = htons(rep_size>>16); + rep->f.f1.top_bytes_format_rep_length = htons((short)(rep_size>>16)); return (format_rep) rep; } @@ -1449,9 +1426,7 @@ FMFormat fmformat; * server_format_rep fields. */ static FMFormat -search_compatible_formats(iocontext, fmformat) -FMContext iocontext; -FMFormat fmformat; +search_compatible_formats(FMContext iocontext, FMFormat fmformat) { int i, search_rep_length; FMContext fmc = (FMContext) iocontext; @@ -1461,7 +1436,7 @@ FMFormat fmformat; } search_rep_length = ntohs(fmformat->server_format_rep->format_rep_length); if (fmformat->server_format_rep->server_rep_version > 0) { - search_rep_length += (ntohs(fmformat->server_format_rep->top_bytes_format_rep_length) >> 16); + search_rep_length += (ntohs(fmformat->server_format_rep->top_bytes_format_rep_length) << 16); } /* search locally first */ @@ -1480,8 +1455,8 @@ FMFormat fmformat; rep_length = ntohs(tmp->server_format_rep->format_rep_length); if (search_rep_length != rep_length) { if (get_format_server_verbose()) { - printf("Format %s found in context %lx, but server reps have different lengths, %d and %d\n", - fmformat->format_name, (long) iocontext, + printf("Format %s found in context %p, but server reps have different lengths, %d and %d\n", + fmformat->format_name, iocontext, search_rep_length, rep_length); } continue; @@ -1491,8 +1466,8 @@ FMFormat fmformat; return tmp; } else { if (get_format_server_verbose()) { - printf("Format %s found in context %lx, but server reps are different\n", - fmformat->format_name, (long) iocontext); + printf("Format %s found in context %p, but server reps are different\n", + fmformat->format_name, iocontext); } } } @@ -1570,7 +1545,7 @@ validate_and_copy_field_list(FMFieldList field_list, FMFormat fmformat) int simple_string = 0; if (strchr(field_list[field].field_type, '[') == NULL) { /* not an array */ - if (index(field_list[field].field_type, '*') == NULL) { + if (strchr(field_list[field].field_type, '*') == NULL) { if (FMstr_to_data_type(field_list[field].field_type) == string_type) { simple_string = 1; } @@ -1581,7 +1556,7 @@ validate_and_copy_field_list(FMFieldList field_list, FMFormat fmformat) } else { int ret = is_var_array_field(field_list, field); if (ret == -1) return NULL; /* rejected */ - if ((ret == 1) || (index(field_list[field].field_type, '*'))) { + if ((ret == 1) || (strchr(field_list[field].field_type, '*'))) { /* variant array, real_field_size is * fmc->pointer_size */ field_size = fmformat->pointer_size; @@ -1721,9 +1696,7 @@ void add_format(FMFormat f, FMFormat* sorted, FMFormat *visited, FMFormat* stack static int -topo_order_subformats(super_format, format_count) -FMFormat super_format; -int format_count; +topo_order_subformats(FMFormat super_format, int format_count) { FMFormat sorted[100], visit[100], stack[100]; int sorted_count = 1; @@ -1942,8 +1915,8 @@ register_data_format(FMContext context, FMStructDescList struct_list) return NULL; } if (get_format_server_verbose()) { - printf("Registered format with format server - %lx in context %lx\n", - (long) formats[0], (long) context); + printf("Registered format with format server - %p in context %p\n", + formats[0], context); dump_FMFormat(formats[0]); } } else { @@ -1952,8 +1925,8 @@ register_data_format(FMContext context, FMStructDescList struct_list) cache_format->ref_count++; if (get_format_server_verbose()) { - printf("Cache hit on format registration %lx \"%s\" ", - (long)cache_format, cache_format->format_name); + printf("Cache hit on format registration %p \"%s\" ", + cache_format, cache_format->format_name); print_format_ID(cache_format); printf("\n"); } @@ -1987,7 +1960,7 @@ generate_format3_server_ID(server_ID_type *server_ID, INT4 hash1 = 0, hash2 = 0; UINT4 server_format_rep_length = ntohs(server_format_rep->format_rep_length); if (server_format_rep->server_rep_version > 0) { - server_format_rep_length += (ntohs(server_format_rep->top_bytes_format_rep_length) >> 16); + server_format_rep_length += (ntohs(server_format_rep->top_bytes_format_rep_length) << 16); } if (server_format_rep_length > (1 << 26)) fprintf(stderr, "Format rep too long in generate_format_server_ID\n"); server_ID->length = 12; @@ -2007,17 +1980,15 @@ generate_format3_server_ID(server_ID_type *server_ID, printf("\n"); } ((version_3_format_ID *) server_ID->value)->rep_len = - htons(server_format_rep_length >> 2); // Mod length by 4 - ((version_3_format_ID *) server_ID->value)->top_byte_rep_len = - htons(server_format_rep_length >> 18); // Essentially, we capture the top 26 bytes of the server length + htons((short)(server_format_rep_length >> 2)); // Mod length by 4 + ((version_3_format_ID *) server_ID->value)->top_byte_rep_len = (unsigned char) + htons((short)(server_format_rep_length >> 18)); // Essentially, we capture the top 26 bytes of the server length ((version_3_format_ID *) server_ID->value)->hash1 = htonl(hash1); ((version_3_format_ID *) server_ID->value)->hash2 = htonl(hash2); } static int -self_server_register_format(fmc, fmformat) -FMContext fmc; -FMFormat fmformat; +self_server_register_format(FMContext fmc, FMFormat fmformat) { format_rep server_format_rep; /* we're a format server ourselves, assign an ID */ @@ -2045,8 +2016,7 @@ FMFormat fmformat; } int -count_FMfield(list) -FMFieldList list; +count_FMfield(FMFieldList list) { int i = 0; while (list[i].field_name != NULL) { @@ -2057,9 +2027,7 @@ FMFieldList list; extern int -struct_size_IOfield(fmc, list) -FMContext fmc; -FMFieldList list; +struct_size_IOfield(FMContext fmc, FMFieldList list) { int i = 0; int struct_size = 0; @@ -2090,24 +2058,20 @@ FMFieldList list; } extern int -struct_size_field_list(list, pointer_size) -FMFieldList list; -int pointer_size; +struct_size_field_list(FMFieldList list, int pointer_size) { return FMstruct_size_field_list(list, pointer_size); } extern int -FMstruct_size_field_list(list, pointer_size) -FMFieldList list; -int pointer_size; +FMstruct_size_field_list(FMFieldList list, int pointer_size) { int i = 0; int struct_size = 0; while (list[i].field_name != NULL) { int field_size = 0; - if ((is_var_array_field(list, i) == 1) || (index(list[i].field_type, '*'))) { + if ((is_var_array_field(list, i) == 1) || (strchr(list[i].field_type, '*'))) { /* variant array, real_field_size is fmformat->pointer_size */ field_size = pointer_size; } else { @@ -2126,16 +2090,14 @@ int pointer_size; extern FMFieldList -field_list_of_IOformat(format) -FMFormat format; +field_list_of_IOformat(FMFormat format) { return format->field_list; } extern int -compare_field_lists(list1, list2) -FMFieldList list1, list2; +compare_field_lists(FMFieldList list1, FMFieldList list2) { int i = 0; do { @@ -2169,8 +2131,7 @@ FMFieldList list1, list2; */ extern FMFieldList -max_field_lists(list1, list2) -FMFieldList list1, list2; +max_field_lists(FMFieldList list1, FMFieldList list2) { FMFieldList max_field_list = NULL; FMFieldList tlist2; @@ -2264,8 +2225,7 @@ FMFieldList list1, list2; extern FMFieldList -copy_field_list(list) -FMFieldList list; +copy_field_list(FMFieldList list) { int field_count = count_FMfield(list); FMFieldList new_field_list; @@ -2288,8 +2248,7 @@ FMFieldList list; extern FMStructDescList -FMcopy_struct_list(list) -FMStructDescList list; +FMcopy_struct_list(FMStructDescList list) { int format_count = 0; FMStructDescList new_list; @@ -2314,8 +2273,7 @@ FMStructDescList list; extern void -free_field_list(list) -FMFieldList list; +free_field_list(FMFieldList list) { int i = 0; while (list[i].field_name != NULL) { @@ -2328,8 +2286,7 @@ FMFieldList list; extern void -FMfree_struct_list(list) -FMStructDescList list; +FMfree_struct_list(FMStructDescList list) { int format_count = 0; int format; @@ -2371,9 +2328,7 @@ field_name_compar(const void *a, const void *b) } FMformat_order -FMformat_cmp(format1, format2) -FMFormat format1; -FMFormat format2; +FMformat_cmp(FMFormat format1, FMFormat format2) { FMformat_order tmp_result = Format_Equal; FMFieldList field_list1 = @@ -2518,8 +2473,7 @@ FMFormat format2; extern char * -name_of_FMformat(format) -FMFormat format; +name_of_FMformat(FMFormat format) { return format->format_name; } @@ -2531,15 +2485,13 @@ format_list_of_FMFormat(FMFormat format) } extern FMdata_type -FMarray_str_to_data_type(str, element_count_ptr) -const char *str; -long *element_count_ptr; +FMarray_str_to_data_type(const char *str, long *element_count_ptr) { FMdata_type ret_type; char field_type[1024]; char *left_paren; long element_count = 1; - int field_type_len; + size_t field_type_len; #ifdef MODULE char *temp_ptr = 0; #endif @@ -2549,7 +2501,7 @@ long *element_count_ptr; return ret_type; } field_type_len = left_paren - str; - strncpy(field_type, str, field_type_len); + strncpy(field_type, str, sizeof(field_type)); field_type[field_type_len] = 0; ret_type = FMstr_to_data_type(field_type); while (left_paren != NULL) { @@ -2578,9 +2530,7 @@ long *element_count_ptr; } extern int -field_type_eq(str1, str2) -const char *str1; -const char *str2; +field_type_eq(const char *str1, const char *str2) { FMdata_type t1, t2; long t1_count, t2_count; @@ -2597,8 +2547,8 @@ const char *str2; char *colon2 = strchr(tmp_str2, ':'); char *lparen1 = strchr(str1, '['); char *lparen2 = strchr(str2, '['); - int count1 = 0; - int count2 = 0; + size_t count1 = 0; + size_t count2 = 0; if (colon1 != NULL) { count1 = colon1 - tmp_str1; @@ -2624,8 +2574,7 @@ const char *str2; } extern char * -base_data_type(str) -const char *str; +base_data_type(const char *str) { char *typ; while (isspace((int)*str) || (*str == '*') || (*str == '(')) { /* skip preceeding space */ @@ -2642,15 +2591,13 @@ const char *str; } extern char * -FMbase_type(field_type) -const char *field_type; +FMbase_type(const char *field_type) { return base_data_type(field_type); } extern FMdata_type -FMstr_to_data_type(str) -const char *str; +FMstr_to_data_type(const char *str) { const char *end; while (isspace((int)*str) || (*str == '*') || (*str == '(')) { /* skip preceeding space */ @@ -2862,8 +2809,7 @@ IOget_array_size_dimen(const char *str, FMFieldList fields, int dimen, int *cont } extern const char * -data_type_to_str(dat) -FMdata_type dat; +data_type_to_str(FMdata_type dat) { switch (dat) { case integer_type: @@ -2887,12 +2833,8 @@ FMdata_type dat; extern void -get_FMformat_characteristics(format, ff, intf, column_major, pointer_size) -FMFormat format; -FMfloat_format *ff; -FMinteger_format *intf; -int *column_major; -int *pointer_size; +get_FMformat_characteristics(FMFormat format, FMfloat_format *ff, FMinteger_format *intf, + int *column_major, int *pointer_size) { if (WORDS_BIGENDIAN) { if (format->byte_reversal) { @@ -2915,24 +2857,21 @@ int *pointer_size; extern int -pointer_size_of_IOformat(format) -FMFormat format; +pointer_size_of_IOformat(FMFormat format) { return format->pointer_size; } extern FMContext -fmc_of_IOformat(format) -FMFormat format; +fmc_of_IOformat(FMFormat format) { return format->context; } extern void -dump_FMFormat(fmformat) -FMFormat fmformat; +dump_FMFormat(FMFormat fmformat) { int index, i; printf("\tFormat \"%s\"; size = %d; Field_Count = %d; Endian = %d; Float format = %s;\n\t\t Pointer size = %d; Column_major_arrays = %d; Alignment = %d; Index = %d, File Version = %d; ", @@ -3005,8 +2944,7 @@ FMFormat fmformat; } extern void -dump_FMFormat_as_XML(fmformat) -FMFormat fmformat; +dump_FMFormat_as_XML(FMFormat fmformat) { int index, i; printf("\n"); @@ -3036,15 +2974,13 @@ FMFormat fmformat; } extern void -add_ref_FMcontext(c) -FMContext c; +add_ref_FMcontext(FMContext c) { c->ref_count++; } extern void -free_FMcontext(c) -FMContext c; +free_FMcontext(FMContext c) { int i; c->ref_count--; @@ -3061,13 +2997,8 @@ FMContext c; #define DUMP #ifdef DUMP static void -free_FMfield(fmformat, field, data, string_base, encode, verbose) -FMFormat fmformat; -int field; -void *data; -void *string_base; -int encode; -int verbose; +free_FMfield(FMFormat fmformat, int field, void *data, void *string_base, + int encode, int verbose) { FMFieldList iofield = &fmformat->field_list[field]; FMVarInfoList iovar = &fmformat->var_list[field]; @@ -3081,15 +3012,15 @@ int verbose; if ((iovar->string == 0) && (iovar->var_array == 0) && - (index(iofield->field_type, '*') == NULL) && + (strchr(iofield->field_type, '*') == NULL) && (iovar->data_type != unknown_type)) { /* must be simple data type or array of simple data types */ return; } dimension = FMget_array_element_count(fmformat, iovar, data, encode); - if ((iovar->var_array) || (index(iofield->field_type, '*') != NULL)) { + if ((iovar->var_array) || (strchr(iofield->field_type, '*') != NULL)) { FMgetFieldStruct descr; /* OK */ - long tmp_offset; + size_t tmp_offset; descr.offset = iofield->field_offset; descr.size = fmformat->pointer_size; descr.data_type = integer_type; @@ -3125,15 +3056,13 @@ int verbose; data_offset += sub_field_size; } } - if ((iovar->var_array) || (index(iofield->field_type, '*') != NULL)) { + if ((iovar->var_array) || (strchr(iofield->field_type, '*') != NULL)) { free(data); } } extern void -FMfree_var_rec_elements(fmformat, data) -FMFormat fmformat; -void *data; +FMfree_var_rec_elements(FMFormat fmformat, void *data) { int index; if (fmformat->variant == 0) return; /* nothing to do */ @@ -3146,8 +3075,8 @@ extern long FMget_array_element_count(FMFormat f, FMVarInfoList var, char *data, int encode) { int i; - long count = 1; - long tmp; + size_t count = 1; + size_t tmp; for (i = 0; i < var->dimen_count; i++) { if (var->dimens[i].static_size != 0) { count = count * var->dimens[i].static_size; @@ -3167,14 +3096,12 @@ FMget_array_element_count(FMFormat f, FMVarInfoList var, char *data, int encode) count = count * tmp; } } - return count; + return (long) count; } #endif static void -byte_swap(data, size) -char *data; -int size; +byte_swap(char *data, int size) { int i; assert((size % 2) == 0); @@ -3192,16 +3119,13 @@ int size; #define FILE_INT INT4 static int -put_serverAtomicInt(fd, file_int_ptr, fmc) -void *fd; -FILE_INT *file_int_ptr; -FMContext fmc; +put_serverAtomicInt(void *fd, FILE_INT *file_int_ptr, FMContext fmc) { #if SIZEOF_INT == 4 int tmp_value = *file_int_ptr; int junk_errno; char *junk_result_str; - if (os_server_write_func(fd, &tmp_value, 4, &junk_errno, &junk_result_str) != 4) { + if (ffs_server_write_func(fd, &tmp_value, 4, &junk_errno, &junk_result_str) != 4) { printf("SERVER WRITE FAILED, ERRNO = %d\n", junk_errno); return 0; } @@ -3212,16 +3136,13 @@ FMContext fmc; } static int -get_serverAtomicInt(fd, file_int_ptr, byte_reversal) -void *fd; -FILE_INT *file_int_ptr; -int byte_reversal; +get_serverAtomicInt(void *fd, FILE_INT *file_int_ptr, int byte_reversal) { #if SIZEOF_INT == 4 int tmp_value; int junk_errno; char *junk_result_str; - if (os_server_read_func(fd, &tmp_value, 4, &junk_errno, &junk_result_str) != 4) { + if (ffs_server_read_func(fd, &tmp_value, 4, &junk_errno, &junk_result_str) != 4) { printf("SERVER READ FAILED, ERRNO = %d\n", junk_errno); return 0; @@ -3239,15 +3160,18 @@ extern int unix_timeout_read_func(void *conn, void *buffer, int length, int *errno_p, char **result_p); +#ifdef _MSC_VER +#define srand48(x) srand((int)(x)) +#define drand48() ((double)rand()/RAND_MAX) +#define sleep(sec) Sleep(1000 * sec) +#endif + extern int -serverAtomicRead(fd, buffer, length) -void *fd; -void *buffer; -int length; +serverAtomicRead(void *fd, void *buffer, int length) { char *junk_result_str = NULL; int junk_errno; - int ret = os_server_read_func(fd, buffer, length, &junk_errno, + int ret = ffs_server_read_func(fd, buffer, length, &junk_errno, &junk_result_str); if (getenv("BAD_CLIENT") && (drand48() < 0.0001)) sleep(600); @@ -3264,22 +3188,18 @@ int length; } extern int -serverAtomicWrite(fd, buffer, length) -void *fd; -void *buffer; -int length; +serverAtomicWrite(void *fd, void *buffer, int length) { char *junk_result_str; int junk_errno; if (getenv("BAD_CLIENT") && (drand48() < 0.001)) sleep(600); - return os_server_write_func(fd, buffer, length, &junk_errno, + return ffs_server_write_func(fd, buffer, length, &junk_errno, &junk_result_str); } static void -provisional_use_warning(fd) -int fd; +provisional_use_warning(int fd) { static int warned = 0; @@ -3298,9 +3218,7 @@ dump_server_error(char *string, FMContext context) } static int -server_register_format(fmc, format) -FMContext fmc; -FMFormat format; +server_register_format(FMContext fmc, FMFormat format) { int tries = 0; @@ -3333,12 +3251,12 @@ FMFormat format; format_rep rep = format->server_format_rep; tmp.len = rep->format_rep_length; - ret = os_server_write_func(fmc->server_fd, &tmp, sizeof(tmp), + ret = ffs_server_write_func(fmc->server_fd, &tmp, sizeof(tmp), &errno, &errstr); if (ret != sizeof(tmp)) goto retry; - ret = os_server_write_func(fmc->server_fd, + ret = ffs_server_write_func(fmc->server_fd, (char*) rep + sizeof(tmp.len), ntohs(rep->format_rep_length) - sizeof(tmp.len), &errno, &errstr); @@ -3351,7 +3269,7 @@ FMFormat format; goto retry; } if (ret_info[0] == 'P') { - provisional_use_warning((int) (long) fmc->server_fd); + provisional_use_warning((int) (intptr_t) fmc->server_fd); } else { if (ret_info[0] != 'I') { dump_server_error("Bad character from format server\n", fmc); @@ -3378,11 +3296,7 @@ static const char xchars[] = "0123456789abcdef"; #define nibble2hex(val) (xchars[val & 0x0f]) static char * -stringify_field_type(type, base_format, buffer, size) -const char *type; -FMFormat base_format; -char *buffer; -int size; +stringify_field_type(const char *type, FMFormat base_format, char *buffer, int size) { char *index_start; unsigned char *server_ID; @@ -3435,9 +3349,7 @@ int size; } extern int -global_name_eq(format1, format2) -FMFormat format1; -FMFormat format2; +global_name_eq(FMFormat format1, FMFormat format2) { if (format1->server_ID.length != format2->server_ID.length) return 0; @@ -3447,18 +3359,16 @@ FMFormat format2; extern char * -global_name_of_FMFormat(format) -FMFormat format; +global_name_of_FMFormat(FMFormat format) { - int size = strlen(format->format_name) + 3 + + int size = (int) strlen(format->format_name) + 3 + 2 * format->server_ID.length; char *buffer = malloc(size); return stringify_field_type(format->format_name, format, buffer, size); } static FMFormat -expand_subformat_from_rep_0(rep) -struct _subformat_wire_format *rep; +expand_subformat_from_rep_0(struct _subformat_wire_format *rep) { FMFormat format = new_FMFormat(); struct _field_wire_format_0 *fields; @@ -3571,8 +3481,7 @@ struct _subformat_wire_format *rep; static FMFormat -expand_subformat_from_rep_1(rep) -struct _subformat_wire_format *rep; +expand_subformat_from_rep_1(struct _subformat_wire_format *rep) { FMFormat format = new_FMFormat(); struct _field_wire_format_1 *fields; @@ -3687,8 +3596,7 @@ struct _subformat_wire_format *rep; static FMFormat -expand_subformat_from_rep(rep) -struct _subformat_wire_format *rep; +expand_subformat_from_rep(struct _subformat_wire_format *rep) { if (rep->f.f0.server_rep_version == 0) { return expand_subformat_from_rep_0(rep); @@ -3704,8 +3612,7 @@ struct _subformat_wire_format *rep; } extern FMFormat -expand_format_from_rep(rep) -format_rep rep; +expand_format_from_rep(format_rep rep) { int format_count; FMFormat top_format; @@ -3817,20 +3724,16 @@ fill_derived_format_values(FMContext fmc, FMFormat format) } extern void -add_format_to_iofile(fmc, format, id_size, id_buffer, index) -FMContext fmc; -FMFormat format; -int id_size; -void *id_buffer; -int index; +add_format_to_iofile(FMContext fmc, FMFormat format, int id_size, + void *id_buffer, int index) { int subformat_count = 0; int i, field; if (get_format_server_verbose()) { - printf("Entering format %s (%lx) into context %lx ", - format->format_name, (long)format, - (long)fmc); + printf("Entering format %s (%p) into context %p ", + format->format_name, format, + fmc); print_server_ID(id_buffer); } while (format->subformats && format->subformats[subformat_count]) { @@ -3890,6 +3793,11 @@ int index; } } +#ifdef _MSC_VER +#define srand48(x) srand((int)(x)) +#define drand48() ((double)rand()/RAND_MAX) +#endif + int FMcontext_get_format_server_identifier(FMContext fmc) { @@ -3897,7 +3805,7 @@ FMcontext_get_format_server_identifier(FMContext fmc) return -1; } if (fmc->format_server_identifier == 0) { - srand48(getpid()); + srand48(time(0)); if (establish_server_connection_ptr(fmc, host_and_fallback) == 0) { if (establish_server_connection_ptr(fmc, host_and_fallback) == 0) { printf("Failed to contact format server\n"); @@ -3908,9 +3816,7 @@ FMcontext_get_format_server_identifier(FMContext fmc) } static FMFormat -server_get_format(iocontext, buffer) -FMContext iocontext; -void *buffer; +server_get_format(FMContext iocontext, void *buffer) { FMContext fmc = (FMContext) iocontext; FMFormat format = NULL; @@ -3955,7 +3861,7 @@ void *buffer; goto retry; } if (return_char == 'P') { - provisional_use_warning((int) (long) fmc->server_fd); + provisional_use_warning((int) (intptr_t) fmc->server_fd); if (serverAtomicRead(fmc->server_fd, &return_char, 1) != 1) { if (get_format_server_verbose()) { printf("Retrying because of failed read\n"); @@ -4017,9 +3923,7 @@ void *buffer; } extern void -server_get_server_ID(fd, server_ID) -void *fd; -void *server_ID; +server_get_server_ID(void *fd, void *server_ID) { int id_size = 8; @@ -4036,14 +3940,14 @@ stringify_server_ID(unsigned char *ID, char *buffer, int len) case 0: if (len < id_size * 2) break; for (i = 0; i < id_size; i++) { - point += sprintf(&buffer[point], "%2x", ID[i]); + point += snprintf(&buffer[point], len - point, "%2x", ID[i]); } break; case 1:{ version_1_format_ID id1; memcpy(&id1, ID, 10); if (len < 3+3+6+10+6+50) /* approx size */ return; - sprintf(buffer, "\n", + snprintf(buffer, len, "\n", id1.version, id1.salt, ntohs(id1.port), ntohl(id1.IP_addr), ntohs(id1.format_identifier)); break; @@ -4051,22 +3955,21 @@ stringify_server_ID(unsigned char *ID, char *buffer, int len) case 2:{ version_2_format_ID *id2 = (version_2_format_ID*)ID; if (len < 3+3+6+10+6+50) /* approx size */ return; - sprintf(buffer, "\n", + snprintf(buffer, len, "\n", id2->version, id2->unused, ntohs(id2->rep_len) << 2, ntohl(id2->hash1), ntohl(id2->hash2)); break; } default: if (len < 30) return; - sprintf(buffer, "server_ID.value); } @@ -4115,8 +4017,7 @@ void *format_ID; #endif extern int -get_rep_len_format_ID(format_ID) -void *format_ID; +get_rep_len_format_ID(void *format_ID) { switch (version_of_format_ID(format_ID)) { case 2:{ @@ -4170,10 +4071,7 @@ void *format_ID; /* write header information to the format server */ extern int -server_write_header(fmc, enc_len, enc_buffer) -FMContext fmc; -int enc_len; -unsigned char *enc_buffer; +server_write_header(FMContext fmc, int enc_len, unsigned char *enc_buffer) { FILE_INT magic = MAGIC_NUMBER + CURRENT_PROTOCOL_VERSION; FILE_INT server_pid; @@ -4223,9 +4121,7 @@ version_of_format_ID(void *server_ID) } extern char * -get_server_rep_FMformat(format, rep_length) -FMFormat format; -int *rep_length; +get_server_rep_FMformat(FMFormat format, int *rep_length) { if (format->server_format_rep == NULL) { format->server_format_rep = @@ -4239,28 +4135,22 @@ int *rep_length; } extern char * -get_server_ID_FMformat(format, id_length) -FMFormat format; -int *id_length; +get_server_ID_FMformat(FMFormat format, int *id_length) { *id_length = format->server_ID.length; return format->server_ID.value; } extern FMContext -FMContext_from_FMformat(format) -FMFormat format; +FMContext_from_FMformat(FMFormat format) { return format->context; } extern FMFormat -load_external_format_FMcontext(iocontext, server_id, id_size, server_rep) -FMContext iocontext; -char *server_id; -int id_size; -char *server_rep; +load_external_format_FMcontext(FMContext iocontext, char *server_id, int id_size, + char *server_rep) { FMFormat format = get_local_format_IOcontext(iocontext, server_id); @@ -4300,3 +4190,24 @@ set_array_order_FMContext(FMContext iofile, int column_major) iofile->native_column_major_arrays = column_major; } +#undef malloc +#undef realloc + +void* ffs_malloc(size_t s) +{ + void* tmp = malloc(s); + if (!tmp) { + fprintf(stderr, "FFS out of memory\n"); + exit(1); + } + return tmp; +} +void* ffs_realloc(void* ptr, size_t s) +{ + void* tmp = realloc(ptr, s); + if (!tmp) { + fprintf(stderr, "FFS out of memory\n"); + exit(1); + } + return tmp; +} diff --git a/fm/fm_get.c b/fm/fm_get.c index 70f19e4284..6b0e1829ca 100755 --- a/fm/fm_get.c +++ b/fm/fm_get.c @@ -29,21 +29,19 @@ #include "fm_internal.h" #include "assert.h" -#ifndef tolower +#if !defined(tolower) & !defined(_MSC_VER) extern int tolower(int); #endif extern FMfloat_format fm_my_float_format; -static long get_offset(void *, int, int); +static size_t get_offset(void *, int, int); static MAX_UNSIGNED_TYPE get_big_unsigned(FMFieldPtr field, void *data); static MAX_FLOAT_TYPE get_big_float(FMFieldPtr field, void *data); static int get_long_warn = 0; static void -byte_swap(data, size) -char *data; -int size; +byte_swap(char *data, int size) { int i; assert((size % 2) == 0); @@ -55,9 +53,7 @@ int size; } static MAX_INTEGER_TYPE -get_big_int(field, data) -FMFieldPtr field; -void *data; +get_big_int(FMFieldPtr field, void *data) { if (field->data_type == integer_type) { if (field->size == sizeof(char)) { @@ -76,15 +72,15 @@ void *data; if (field->byte_swap) byte_swap((char *) &tmp, (int) sizeof(int)); return (long) tmp; - } else if (field->size == sizeof(long)) { - long tmp; - memcpy(&tmp, (char *) data + field->offset, sizeof(long)); + } else if (field->size == sizeof(size_t)) { + size_t tmp; + memcpy(&tmp, (char *) data + field->offset, sizeof(size_t)); if (field->byte_swap) - byte_swap((char *) &tmp, (int)sizeof(long)); + byte_swap((char *) &tmp, (int)sizeof(size_t)); return tmp; } else if (field->size == 2 * sizeof(long)) { long tmp; - int low_bytes_offset = field->offset; + size_t low_bytes_offset = field->offset; if (WORDS_BIGENDIAN) { if (!field->byte_swap) { low_bytes_offset += sizeof(long); @@ -124,9 +120,7 @@ void *data; } static MAX_UNSIGNED_TYPE -get_big_unsigned(field, data) -FMFieldPtr field; -void *data; +get_big_unsigned(FMFieldPtr field, void *data) { if ((field->data_type == unsigned_type) || (field->data_type == enumeration_type) || @@ -147,15 +141,15 @@ void *data; if (field->byte_swap) byte_swap((char *) &tmp, (int)sizeof(int)); return (MAX_UNSIGNED_TYPE) tmp; - } else if (field->size == sizeof(long)) { - unsigned long tmp; - memcpy(&tmp, (char *) data + field->offset, sizeof(long)); + } else if (field->size == sizeof(size_t)) { + size_t tmp; + memcpy(&tmp, (char *) data + field->offset, sizeof(size_t)); if (field->byte_swap) - byte_swap((char *) &tmp, (int)sizeof(long)); + byte_swap((char *) &tmp, (int)sizeof(size_t)); return tmp; } else if (field->size == 2 * sizeof(long)) { unsigned long tmp; - int low_bytes_offset = field->offset; + size_t low_bytes_offset = field->offset; if (WORDS_BIGENDIAN) { if (!field->byte_swap) { low_bytes_offset += sizeof(long); @@ -224,9 +218,7 @@ float_conversion(unsigned char*value, int size, FMfloat_format src_format, } static MAX_FLOAT_TYPE -get_big_float(field, data) -FMFieldPtr field; -void *data; +get_big_float(FMFieldPtr field, void *data) { if (field->data_type == float_type) { if (field->size == sizeof(float)) { @@ -301,19 +293,15 @@ void *data; } extern float -get_FMfloat(field, data) -FMFieldPtr field; -void *data; +get_FMfloat(FMFieldPtr field, void *data) { float tmp; - tmp = get_big_float(field, data); + tmp = (float)get_big_float(field, data); return tmp; } extern double -get_FMdouble(field, data) -FMFieldPtr field; -void *data; +get_FMdouble(FMFieldPtr field, void *data) { double tmp; tmp = get_big_float(field, data); @@ -323,9 +311,7 @@ void *data; #if SIZEOF_LONG_DOUBLE != 0 extern long double -get_FMlong_double(field, data) -FMFieldPtr field; -void *data; +get_FMlong_double(FMFieldPtr field, void *data) { long double tmp; tmp = get_big_float(field, data); @@ -334,74 +320,58 @@ void *data; #endif extern short -get_FMshort(field, data) -FMFieldPtr field; -void *data; +get_FMshort(FMFieldPtr field, void *data) { - short tmp = get_big_int(field, data); + short tmp = (short)get_big_int(field, data); return tmp; } extern unsigned short -get_FMushort(field, data) -FMFieldPtr field; -void *data; +get_FMushort(FMFieldPtr field, void *data) { - unsigned short tmp = get_big_unsigned(field, data); + unsigned short tmp = (unsigned short) get_big_unsigned(field, data); return tmp; } extern int -get_FMint(field, data) -FMFieldPtr field; -void *data; +get_FMint(FMFieldPtr field, void *data) { - int tmp= get_big_int(field, data); + int tmp = (int) get_big_int(field, data); return tmp; } extern unsigned int -get_FMuint(field, data) -FMFieldPtr field; -void *data; +get_FMuint(FMFieldPtr field, void *data) { - unsigned int tmp = get_big_unsigned(field, data); + unsigned int tmp = (unsigned int) get_big_unsigned(field, data); return tmp; } -extern long -get_FMlong(field, data) -FMFieldPtr field; -void *data; +extern size_t +get_FMlong(FMFieldPtr field, void *data) { - long tmp = get_big_int(field, data); + ssize_t tmp = get_big_int(field, data); return tmp; } -extern unsigned long -get_FMulong(field, data) -FMFieldPtr field; -void *data; +extern size_t +get_FMulong(FMFieldPtr field, void *data) { - unsigned long tmp = get_big_unsigned(field, data); + size_t tmp = get_big_unsigned(field, data); return tmp; } #if SIZEOF_LONG_LONG != 0 extern long long -get_FMlong_long(field, data) -FMFieldPtr field; -void *data; +get_FMlong_long(FMFieldPtr field, void *data) { long long tmp= get_big_int(field, data); return tmp; } extern unsigned long long -get_FMulong_long(field, data) -FMFieldPtr field; -void *data; +get_FMulong_long(FMFieldPtr field, void *data) { unsigned long long tmp = get_big_unsigned(field, data); return tmp; @@ -410,19 +380,15 @@ void *data; #endif extern void -get_FMlong8(field, data, low_long, high_long) -FMFieldPtr field; -void *data; -unsigned long *low_long; -long *high_long; +get_FMlong8(FMFieldPtr field, void *data, unsigned long *low_long, long *high_long) { *low_long = 0; if (high_long) *high_long = 0; if (field->data_type == integer_type) { if (field->size == 2 * sizeof(long)) { - int low_bytes_offset = field->offset; - int high_bytes_offset = field->offset; + size_t low_bytes_offset = field->offset; + size_t high_bytes_offset = field->offset; FMgetFieldStruct tmp_field; /*OK */ tmp_field = *field; if (WORDS_BIGENDIAN) { @@ -440,15 +406,15 @@ long *high_long; } tmp_field.size = sizeof(long); tmp_field.offset = low_bytes_offset; - *low_long = get_FMulong(&tmp_field, data); + *low_long = (unsigned long) get_FMulong(&tmp_field, data); if (high_long) { tmp_field = *field; tmp_field.size = sizeof(long); tmp_field.offset = high_bytes_offset; - *high_long = get_FMlong(&tmp_field, data); + *high_long = (long) get_FMlong(&tmp_field, data); } } else { - *low_long = get_FMlong(field, data); + *low_long = (long) get_FMlong(field, data); } } else if (field->data_type == float_type) { MAX_FLOAT_TYPE tmp; @@ -461,19 +427,15 @@ long *high_long; } extern int -get_FMulong8(field, data, low_long, high_long) -FMFieldPtr field; -void *data; -unsigned long *low_long; -unsigned long *high_long; +get_FMulong8(FMFieldPtr field, void *data, unsigned long *low_long, unsigned long *high_long) { *low_long = 0; if (high_long) *high_long = 0; if (field->data_type == unsigned_type) { if (field->size == 2 * sizeof(long)) { - int low_bytes_offset = field->offset; - int high_bytes_offset = field->offset; + size_t low_bytes_offset = field->offset; + size_t high_bytes_offset = field->offset; FMgetFieldStruct tmp_field; /*OK */ tmp_field = *field; if (WORDS_BIGENDIAN) { @@ -491,16 +453,16 @@ unsigned long *high_long; } tmp_field.size = sizeof(unsigned long); tmp_field.offset = low_bytes_offset; - *low_long = get_FMulong(&tmp_field, data); + *low_long = (unsigned long) get_FMulong(&tmp_field, data); if (high_long) { tmp_field = *field; tmp_field.size = sizeof(unsigned long); tmp_field.offset = high_bytes_offset; - *high_long = get_FMulong(&tmp_field, data); + *high_long = (unsigned long) get_FMulong(&tmp_field, data); } return 0; } else { - *low_long = get_FMulong(field, data); + *low_long = (unsigned long) get_FMulong(field, data); return 0; } } else if (field->data_type == integer_type) { @@ -521,9 +483,7 @@ unsigned long *high_long; } extern char -get_FMchar(field, data) -FMFieldPtr field; -void *data; +get_FMchar(FMFieldPtr field, void *data) { if (field->data_type == char_type) { return (char) *((char *) data + field->offset); @@ -536,9 +496,7 @@ void *data; } extern int -get_FMenum(field, data) -FMFieldPtr field; -void *data; +get_FMenum(FMFieldPtr field, void *data) { FMgetFieldStruct tmp_field; /*OK */ tmp_field = *field; @@ -547,24 +505,19 @@ void *data; } extern char * -get_FMstring(field, data) -FMFieldPtr field; -void *data; +get_FMstring(FMFieldPtr field, void *data) { return get_FMstring_base(field, data, data); } extern char * -get_FMstring_base(field, data, string_base) -FMFieldPtr field; -void *data; -void *string_base; +get_FMstring_base(FMFieldPtr field, void *data, void *string_base) { - unsigned long offset = get_offset((void *) ((char *) data + field->offset), + uintptr_t offset = get_offset((void *) ((char *) data + field->offset), field->size, field->byte_swap); if (offset == 0) { return NULL; - } else if (offset > (unsigned long) data) { /* probably * + } else if (offset > (uintptr_t) data) { /* probably * * converted * * string */ return (char *) offset; @@ -574,13 +527,9 @@ void *string_base; } extern void * -get_FMaddr(field, data, string_base, encode) -FMFieldPtr field; -void *data; -void *string_base; -int encode; +get_FMaddr(FMFieldPtr field, void *data, void *string_base, int encode) { - unsigned long offset = get_offset((void *) ((char *) data + field->offset), + uintptr_t offset = get_offset((void *) ((char *) data + field->offset), field->size, field->byte_swap); if (offset == 0) { return NULL; @@ -591,11 +540,8 @@ int encode; } } -static long -get_offset(data, size, swap) -void *data; -int size; -int swap; +static size_t +get_offset(void *data, int size, int swap) { FMgetFieldStruct field; /*OK */ field.offset = 0; @@ -605,16 +551,14 @@ int swap; if (size == sizeof(int)) { return get_FMlong(&field, data); } else { - field.offset = size - sizeof(long); - field.size = sizeof(long); + field.offset = size - sizeof(size_t); + field.size = sizeof(size_t); return get_FMlong(&field, data); } } extern int -FM_field_type_eq(str1, str2) -const char *str1; -const char *str2; +FM_field_type_eq(const char *str1, const char *str2) { FMdata_type t1, t2; long t1_count, t2_count; @@ -631,8 +575,8 @@ const char *str2; char *colon2 = strchr(tmp_str2, ':'); char *lparen1 = strchr(str1, '['); char *lparen2 = strchr(str2, '['); - int count1 = 0; - int count2 = 0; + intptr_t count1 = 0; + intptr_t count2 = 0; if (colon1 != NULL) { count1 = colon1 - tmp_str1; @@ -658,11 +602,7 @@ const char *str2; } extern int -IOget_array_size_dimen(str, fields, dimen, control_field) -const char *str; -FMFieldList fields; -int dimen; -int *control_field; +IOget_array_size_dimen(const char *str, FMFieldList fields, int dimen, int *control_field) { char *left_paren, *end; long static_size; @@ -725,9 +665,7 @@ int *control_field; } extern FMFieldPtr -get_FMfieldPtrFromList(field_list, fieldname) -FMFieldList field_list; -const char *fieldname; +get_FMfieldPtrFromList(FMFieldList field_list, const char *fieldname) { int index; FMFieldPtr ret_val; @@ -797,7 +735,7 @@ get_FMfieldInt_by_name(FMFieldList field_list, const char *fieldname, void *data return get_FMint(&descr, data); } -extern long +extern size_t get_FMfieldLong_by_name(FMFieldList field_list, const char *fieldname, void *data) { int index; @@ -839,7 +777,7 @@ get_FMPtrField_by_name(FMFieldList field_list, const char *fieldname, void *data field.size = sizeof(void*); field.byte_swap = 0; - unsigned long offset = get_offset((void *) ((char *) data + field.offset), + size_t offset = get_offset((void *) ((char *) data + field.offset), field.size, field.byte_swap); if (offset == 0) { return NULL; @@ -869,9 +807,7 @@ set_FMPtrField_by_name(FMFieldList field_list, const char *fieldname, void *data } extern FMFieldPtr -get_FMfieldPtr(format, fieldname) -FMFormat format; -const char *fieldname; +get_FMfieldPtr(FMFormat format, const char *fieldname) { int index; FMFieldPtr ret_val; @@ -908,9 +844,7 @@ const char *fieldname; } extern FMFieldPtr -get_local_FieldPtr(format, fieldname) -FMFormat format; -const char *fieldname; +get_local_FieldPtr(FMFormat format, const char *fieldname) { FMFieldPtr ret_val = get_FMfieldPtr(format, fieldname); diff --git a/fm/fm_internal.h b/fm/fm_internal.h index 0fe802822f..1fd7abc0c5 100755 --- a/fm/fm_internal.h +++ b/fm/fm_internal.h @@ -1,6 +1,13 @@ #ifndef FM_INTERNAL_H #define FM_INTERNAL_H +#if defined(_MSC_VER) +#include +typedef SSIZE_T ssize_t; +#define strncpy(dest, src, size) strcpy_s(dest, size, src) +#define snprintf sprintf_s +#endif + #define MAGIC_NUMBER 0x4356ffa9 /* random magic */ #define REVERSE_MAGIC_NUMBER 0xa9ff5643 /* byte reversed random * magic */ @@ -91,7 +98,7 @@ extern FMTypeDesc* gen_FMTypeDesc(FMFieldList fl, int field, const char *typ); typedef struct _FMgetFieldStruct { - int offset; + size_t offset; int size; FMdata_type data_type; unsigned char byte_swap; @@ -262,18 +269,22 @@ typedef struct { #define MAX_UNSIGNED_TYPE unsigned MAX_INTEGER_TYPE -typedef int (*IOinterface_func)(void *conn, void *buffer, int length, +typedef int (*IOinterface_func)(void *conn, void *buffer, size_t length, int *errno_p, char **result_p); #if !defined(HAVE_IOVEC_DEFINE) && !defined(_STRUCT_IOVEC) && !(defined(_BITS_UIO_H)) -#define HAVE_IOVEC_DEFINE +#define _STRUCT_IOVEC struct iovec { const void *iov_base; - long iov_len; + size_t iov_len; }; #else +#ifdef _MSC_VER +#include "winsock.h" +#else #include #endif +#endif typedef int (*IOinterface_funcv)(void *conn, struct iovec *iov, int icount, int *errno_p, @@ -286,20 +297,12 @@ typedef int (*IOinterface_poll)(void *conn); typedef void *(*IOinterface_open)(const char *path, const char *flag_str, int *input, int *output); +typedef int (*IOinterface_lseek)(void* conn, size_t pos, int cmd); typedef void (*IOinterface_init)(void ); -extern IOinterface_func os_file_read_func; -extern IOinterface_func os_file_write_func; - -extern IOinterface_func os_read_func; -extern IOinterface_func os_write_func; -extern int os_max_iov; -extern IOinterface_close os_close_func; -extern IOinterface_poll os_poll_func; -extern IOinterface_open os_file_open_func; -extern IOinterface_func os_server_read_func; -extern IOinterface_func os_server_write_func; -extern IOinterface_init os_sockets_init_func; +extern IOinterface_func ffs_server_read_func; +extern IOinterface_func ffs_server_write_func; +extern IOinterface_init ffs_sockets_init_func; extern int version_of_format_ID(void *server_ID); extern int FFS_gen_authentication (unsigned char *outbuf); @@ -321,4 +324,12 @@ extern void dump_FMFormat(FMFormat ioformat); extern int format_server_restarted(FMContext context); extern int FMhas_XML_info(FMFormat format); extern int get_internal_format_server_identifier(format_server fs); + +#ifdef HAVE_MALLOC_H +#include +#endif +#define malloc(x) ffs_malloc(x) +#define realloc(ptr, s) ffs_realloc(ptr, s) +void* ffs_malloc(size_t s); +void* ffs_realloc(void* ptr, size_t s); #endif diff --git a/ffs/io_interface.h b/fm/io_interface.h old mode 100755 new mode 100644 similarity index 62% rename from ffs/io_interface.h rename to fm/io_interface.h index 3ca19aed96..e0f635bdec --- a/ffs/io_interface.h +++ b/fm/io_interface.h @@ -1,52 +1,37 @@ -#if defined(HAVE_WINDOWS_H) && !defined(NEED_IOVEC_DEFINE) -#define NEED_IOVEC_DEFINE -#endif - -#ifdef NEED_IOVEC_DEFINE -struct iovec { - void *iov_base; - int iov_len; -}; -#endif - -#if defined(FUNCPROTO) || defined(__STDC__) || defined(__cplusplus) || defined(c_plusplus) -#ifndef ARGS -#define ARGS(args) args -#endif -#else -#ifndef ARGS -#define ARGS(args) (/*args*/) -#endif -#endif - -#ifndef HAVE_IOVEC_DEFINE -#define HAVE_IOVEC_DEFINE +#if defined(HAVE_WINDOWS_H) && !defined(NEED_IOVEC_DEFINE) && !defined(_STRUCT_IOVEC) +#define _STRUCT_IOVEC struct iovec { const void *iov_base; size_t iov_len; }; #endif +#ifndef _MSC_VER +#define SOCKET int +#endif + #ifndef FM_INTERNAL_H -typedef int (*IOinterface_func) ARGS((void *conn, void *buffer, int length, - int *errno_p, char **result_p)); +typedef int (*IOinterface_func)(void *conn, void *buffer, size_t length, + int *errno_p, char **result_p); -typedef int (*IOinterface_funcv) ARGS((void *conn, struct iovec *iov, +typedef int (*IOinterface_funcv)(void *conn, struct iovec *iov, int icount, int *errno_p, - char **result_p)); + char **result_p); -typedef int (*IOinterface_close) ARGS((void *conn)); +typedef int (*IOinterface_close)(void *conn); -typedef int (*IOinterface_poll) ARGS((void *conn)); +typedef int (*IOinterface_poll)(void *conn); typedef void *(*IOinterface_open)(const char *path, const char *flag_str, int *input, int *output); typedef void (*IOinterface_init)(void ); +typedef int (*IOinterface_lseek)(void* conn, size_t pos, int cmd); #endif extern IOinterface_func ffs_file_read_func; extern IOinterface_func ffs_file_write_func; extern IOinterface_funcv ffs_file_readv_func; extern IOinterface_funcv ffs_file_writev_func; +extern IOinterface_lseek ffs_file_lseek_func; extern IOinterface_func ffs_read_func; extern IOinterface_func ffs_write_func; @@ -55,7 +40,9 @@ extern IOinterface_funcv ffs_writev_func; extern int ffs_max_iov; extern IOinterface_close ffs_close_func; extern IOinterface_open ffs_file_open_func; +extern IOinterface_init ffs_sockets_init_func; +#ifdef __FFS_H__ extern void set_interface_FFSFile(FFSFile f, IOinterface_func write_func, IOinterface_func read_func, @@ -77,3 +64,4 @@ set_socket_interface_FFSFile(FFSFile f); extern void set_file_interface_FFSFile(FFSFile f); +#endif diff --git a/fm/lookup3.c b/fm/lookup3.c index 1c1e56c47d..ee6463540d 100755 --- a/fm/lookup3.c +++ b/fm/lookup3.c @@ -37,7 +37,9 @@ on 1 byte), but shoehorning those bytes into integers efficiently is messy. #include /* defines printf for tests */ #include /* defines time_t for timings in the test */ #include /* defines uint32_t etc */ +#ifndef _MSC_VER #include /* attempt to define endianness */ +#endif #ifdef linux # include /* attempt to define endianness */ #endif diff --git a/fm/nt_io.c b/fm/nt_io.c index b532473c73..c0d047c808 100755 --- a/fm/nt_io.c +++ b/fm/nt_io.c @@ -8,6 +8,7 @@ #include #include #include +#include #include "ffs.h" #include "io_interface.h" #include "ffs_internal.h" @@ -26,21 +27,14 @@ char **result_p; bResult = ReadFile(conn, (char *) buffer, length, &iget, NULL); if (iget == 0) { - *result_p = "End of file"; - *errno_p = 0; + if (result_p) *result_p = "End of file"; + if (errno_p) *errno_p = 0; return 0; /* end of file */ } else { if (!bResult) { - *errno_p = GetLastError(); - if ((*errno_p != WSAEWOULDBLOCK) && - (*errno_p != WSAEINPROGRESS) && - (*errno_p != WSAEINTR)) { - /* serious error */ - return -1; - } else { - *errno_p = 0; - iget = 0; - } + return -1; + } else { + if(errno_p) *errno_p = 0; } } @@ -49,22 +43,15 @@ char **result_p; bResult = ReadFile((HANDLE) conn, (char *) buffer + length - left, left, &iget, NULL); if (iget == 0) { - *result_p = "End of file"; - *errno_p = 0; + if (result_p) *result_p = "End of file"; + if (errno_p) *errno_p = 0; return length - left; /* end of file */ } else { if (!bResult) { - *errno_p = GetLastError(); - if ((*errno_p != WSAEWOULDBLOCK) && - (*errno_p != WSAEINPROGRESS) && - (*errno_p != WSAEINTR)) { - /* serious error */ return (length - left); } else { - *errno_p = 0; - iget = 0; + if (errno_p) *errno_p = 0; } - } } left -= iget; } @@ -81,52 +68,54 @@ char **result_p; { int left = length; int iget; - iget = recv((unsigned int) conn, (char *) buffer + length - left, left, 0); + iget = recv((unsigned int) (intptr_t)conn, (char *) buffer + length - left, left, 0); if (iget == 0) { - *result_p = NULL; - *errno_p = 0; + if (result_p) *result_p = NULL; + if (errno_p) *errno_p = 0; return 0; /* No more socket data */ } else if (iget == SOCKET_ERROR) { - *errno_p = WSAGetLastError(); - if ((*errno_p != WSAEWOULDBLOCK) && - (*errno_p != WSAEINPROGRESS) && - (*errno_p != WSAECONNRESET) && - (*errno_p != WSAEINTR)) { + DWORD tmp = WSAGetLastError(); + if (errno_p) *errno_p = tmp; + if ((tmp != WSAEWOULDBLOCK) && + (tmp != WSAEINPROGRESS) && + (tmp != WSAECONNRESET) && + (tmp != WSAEINTR)) { /* serious error */ - fprintf(stderr, "WINSOCK ERROR during receive, %i on socket %i\n", - *errno_p, conn); + fprintf(stderr, "WINSOCK ERROR during receive, %i on socket %p\n", + tmp, conn); return -1; } else { - if (*errno_p == WSAECONNRESET) + if (tmp == WSAECONNRESET) return -1; - *errno_p = 0; + if (errno_p) *errno_p = 0; iget = 0; } } left = length - iget; while (left > 0) { - iget = recv((unsigned int) conn, (char *) buffer + length - left, + iget = recv((unsigned int)(intptr_t) conn, (char *) buffer + length - left, left, 0); if (iget == 0) { - *result_p = NULL; - *errno_p = 0; + if (result_p) *result_p = NULL; + if (errno_p) *errno_p = 0; return length - left; /* no more socket data */ } else { if (iget == SOCKET_ERROR) { - *errno_p = WSAGetLastError(); - if ((*errno_p != WSAEWOULDBLOCK) && - (*errno_p != WSAEINPROGRESS) && - (*errno_p != WSAECONNRESET) && - (*errno_p != WSAEINTR)) { + DWORD tmp = WSAGetLastError(); + if (errno_p) *errno_p = tmp; + if ((tmp != WSAEWOULDBLOCK) && + (tmp != WSAEINPROGRESS) && + (tmp != WSAECONNRESET) && + (tmp != WSAEINTR)) { /* serious error */ - fprintf(stderr, "WINSOCK ERROR during receive2, %i on socket %i\n", - *errno_p, conn); + fprintf(stderr, "WINSOCK ERROR during receive2, %i on socket %p\n", + tmp, conn); return (length - left); } else { - if (*errno_p == WSAECONNRESET) + if (tmp == WSAECONNRESET) return -1; - *errno_p = 0; + if(errno_p) *errno_p = 0; iget = 0; } } @@ -154,14 +143,15 @@ char **result_p; bResult = WriteFile((HANDLE) conn, (char *) buffer + length - left, left, &iget, NULL); if (!bResult) { - *errno_p = GetLastError(); - if ((*errno_p != WSAEWOULDBLOCK) && - (*errno_p != WSAEINPROGRESS) && - (*errno_p != WSAEINTR)) { + DWORD tmp = GetLastError(); + if (errno_p) tmp = tmp; + if ((tmp != WSAEWOULDBLOCK) && + (tmp != WSAEINPROGRESS) && + (tmp != WSAEINTR)) { /* serious error */ return (length - left); } else { - *errno_p = 0; + if(errno_p) *errno_p = 0; iget = 0; } } @@ -183,17 +173,18 @@ char **result_p; int iget = 0; while (left > 0) { - iget = send((unsigned int) conn, (char *) buffer + length - left, + iget = send((unsigned int) (intptr_t)conn, (char *) buffer + length - left, left, 0); if (iget == SOCKET_ERROR) { - *errno_p = GetLastError(); - if ((*errno_p != WSAEWOULDBLOCK) && - (*errno_p != WSAEINPROGRESS) && - (*errno_p != WSAEINTR)) { + DWORD tmp = GetLastError(); + if (errno_p) *errno_p = tmp; + if ((tmp != WSAEWOULDBLOCK) && + (tmp != WSAEINPROGRESS) && + (tmp != WSAEINTR)) { /* serious error */ return (length - left); } else { - *errno_p = 0; + if (errno_p) *errno_p = 0; iget = 0; } } @@ -218,28 +209,34 @@ void *conn; } static void * -nt_file_open_func(path, flag_str, input, output) -const char *path; -const char *flag_str; -int *input; -int *output; +nt_file_open_func(const char *path, const char *flag_str, int *input, int *output) { - + int readfile = 0; + int writefile = 0; void *file; - long tmp_flags = (long)flag_str; + long tmp_flags = (long)(intptr_t)flag_str; + if (input) *input = 0; + if (output) *output = 0; + tmp_flags &= ~(O_TRUNC); tmp_flags &= ~(O_CREAT); if ((O_RDONLY == tmp_flags) || (O_WRONLY == tmp_flags)) { /* must be old style call */ - *input = (O_RDONLY == (long) flag_str); - *output = (O_WRONLY & (long) flag_str); + if (input) *input = (O_RDONLY == (long) (intptr_t)flag_str); + if (output) *output = (O_WRONLY & (long) (intptr_t)flag_str); } else { if (strcmp(flag_str, "r") == 0) { - *input = TRUE; + if (input) *input = TRUE; + readfile = 1; } else if (strcmp(flag_str, "w") == 0) { - *output = TRUE; + if (output) *output = TRUE; + writefile = 1; + } else if (strcmp(flag_str, "a") == 0) { + if (output) *output = 1; + if (input) *input = 1; + readfile = writefile = 1; } else { fprintf(stderr, "Open flags value not understood for file \"%s\"\n", path); @@ -247,7 +244,7 @@ int *output; } } - if (*input) { + if (readfile) { file = CreateFile(path, GENERIC_READ, FILE_SHARE_READ, NULL, OPEN_EXISTING, FILE_ATTRIBUTE_ARCHIVE, NULL); @@ -262,6 +259,12 @@ int *output; } } +static int +nt_file_lseek_func (void *file, size_t pos, int origin) +{ + return SetFilePointer((HANDLE)file, (long)pos, 0, origin); +} + static int nt_socket_readv_func(conn, iov, icount, errno_p, result_p) @@ -302,14 +305,35 @@ char **result_p; return icount; } +static int +null_file_writev_func(conn, iov, icount, errno_p, result_p) +void* conn; +struct iovec* iov; +int icount; +int* errno_p; +char** result_p; +{ + + int i = 0; + for (; i < icount; i++) { + if (nt_file_write_func(conn, iov[i].iov_base, iov[i].iov_len, errno_p, + result_p) != iov[i].iov_len) { + return i; + } + } + return icount; +} /* Winsock init stuff, ask for ver 1.1 */ -static WORD wVersionRequested = MAKEWORD(1, 1); +static WORD wVersionRequested = MAKEWORD(2, 2); static WSADATA wsaData; static void nt_socket_init_func() { + static int once = 0; + if (once) return; + once = 1; int nErrorStatus; nErrorStatus = WSAStartup(wVersionRequested, &wsaData); if (nErrorStatus != 0) { @@ -324,7 +348,7 @@ static int nt_poll_func(conn) void *conn; { - int fd = (int) (long) conn; + int fd = (int) (intptr_t) conn; struct timeval time; fd_set read_fds; int ret_val; @@ -340,22 +364,23 @@ void *conn; return (ret_val > 0); } -IOinterface_func os_file_read_func = (IOinterface_func)nt_file_read_func; -IOinterface_func os_file_write_func = (IOinterface_func)nt_file_write_func; -IOinterface_funcv os_file_readv_func = (IOinterface_funcv)null_file_readv_func; -IOinterface_funcv os_file_writev_func = NULL; +IOinterface_func ffs_file_read_func = (IOinterface_func)nt_file_read_func; +IOinterface_func ffs_file_write_func = (IOinterface_func)nt_file_write_func; +IOinterface_funcv ffs_file_readv_func = (IOinterface_funcv)null_file_readv_func; +IOinterface_funcv ffs_file_writev_func = (IOinterface_funcv)null_file_writev_func; +IOinterface_lseek ffs_file_lseek_func = (IOinterface_lseek)nt_file_lseek_func; -IOinterface_func os_read_func = (IOinterface_func)nt_socket_read_func; -IOinterface_func os_write_func = (IOinterface_func)nt_socket_write_func; -IOinterface_funcv os_readv_func = (IOinterface_funcv)nt_socket_readv_func; -IOinterface_funcv os_writev_func = NULL; -int os_max_iov = 1; +IOinterface_func ffs_read_func = (IOinterface_func)nt_socket_read_func; +IOinterface_func ffs_write_func = (IOinterface_func)nt_socket_write_func; +IOinterface_funcv ffs_readv_func = (IOinterface_funcv)nt_socket_readv_func; +IOinterface_funcv ffs_writev_func = NULL; +int ffs_max_iov = 1; -IOinterface_open os_file_open_func = (IOinterface_open)nt_file_open_func; -IOinterface_close os_close_func = (IOinterface_close) nt_close_func; -IOinterface_poll os_poll_func = (IOinterface_poll)nt_poll_func; -IOinterface_func os_server_read_func = (IOinterface_func)nt_socket_read_func; -IOinterface_func os_server_write_func = (IOinterface_func)nt_socket_write_func; -IOinterface_init os_sockets_init_func = (IOinterface_init)nt_socket_init_func; +IOinterface_open ffs_file_open_func = (IOinterface_open)nt_file_open_func; +IOinterface_close ffs_close_func = (IOinterface_close) nt_close_func; +IOinterface_poll ffs_poll_func = (IOinterface_poll)nt_poll_func; +IOinterface_func ffs_server_read_func = (IOinterface_func)nt_socket_read_func; +IOinterface_func ffs_server_write_func = (IOinterface_func)nt_socket_write_func; +IOinterface_init ffs_sockets_init_func = (IOinterface_init)nt_socket_init_func; diff --git a/fm/null_io.c b/fm/null_io.c index 0c68b25dfe..d3b65f5bbf 100644 --- a/fm/null_io.c +++ b/fm/null_io.c @@ -101,22 +101,22 @@ void *conn; } -IOinterface_func os_file_read_func = null_read_func; -IOinterface_func os_file_write_func = null_write_func; -/*IOinterface_funcv os_file_readv_func = unix_readv_func; - IOinterface_funcv os_file_writev_func = unix_writev_func;*/ +IOinterface_func ffs_file_read_func = (IOinterface_func)null_read_func; +IOinterface_func ffs_file_write_func = (IOinterface_func)null_write_func; +/*IOinterface_funcv ffs_file_readv_func = unix_readv_func; + IOinterface_funcv ffs_file_writev_func = unix_writev_func;*/ -IOinterface_func os_read_func = null_read_func; -IOinterface_func os_write_func = null_write_func; -/*IOinterface_funcv os_readv_func = unix_readv_func; - IOinterface_funcv os_writev_func = unix_writev_func;*/ +IOinterface_func ffs_read_func = (IOinterface_func) null_read_func; +IOinterface_func ffs_write_func = (IOinterface_func)null_write_func; +/*IOinterface_funcv ffs_readv_func = unix_readv_func; + IOinterface_funcv ffs_writev_func = unix_writev_func;*/ #ifndef IOV_MAX #define IOV_MAX 16 #endif -int os_max_iov = IOV_MAX; -IOinterface_close os_close_func = null_close_func; -IOinterface_poll os_poll_func = null_poll_func; -IOinterface_open os_file_open_func = null_file_open_func; -IOinterface_func os_server_read_func = null_read_func; -IOinterface_func os_server_write_func = null_write_func; -IOinterface_init os_sockets_init_func = NULL; +int ffs_max_iov = IOV_MAX; +IOinterface_close ffs_close_func = (IOinterface_close)null_close_func; +IOinterface_poll ffs_poll_func = (IOinterface_poll)null_poll_func; +IOinterface_open ffs_file_open_func = (IOinterface_open)null_file_open_func; +IOinterface_func ffs_server_read_func = (IOinterface_func)null_read_func; +IOinterface_func ffs_server_write_func = (IOinterface_func)null_write_func; +IOinterface_init ffs_sockets_init_func = NULL; diff --git a/fm/progs/format_cmd.c b/fm/progs/format_cmd.c index 395167fd76..c9ce7fc2d8 100755 --- a/fm/progs/format_cmd.c +++ b/fm/progs/format_cmd.c @@ -27,14 +27,11 @@ extern int (*establish_server_connection_ptr)(FMContext fmc, action_t action); static int -serverAtomicWrite(fd, buffer, length) -void* fd; -void *buffer; -int length; +serverAtomicWrite(void* fd, void *buffer, int length) { char *junk_result_str; int junk_errno; - return os_server_write_func(fd, buffer, length, &junk_errno, + return ffs_server_write_func(fd, buffer, length, &junk_errno, &junk_result_str); } @@ -48,8 +45,7 @@ usage_exit() static char *format_server_host = "\"not set\""; static void -die_with_error(sig) -int sig; +die_with_error(int sig) { fprintf(stderr, "Format server %s not responding. Timeout.\n", format_server_host); @@ -57,11 +53,9 @@ int sig; } int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { - FMContext context = create_FMcontext(NULL); + FMContext context = create_FMcontext(); char format_command_char = 'c'; char format_dump_char = 'D'; char format_read_char = 'R'; diff --git a/fm/progs/format_dump.c b/fm/progs/format_dump.c index 82c6ad659e..08dc3df730 100755 --- a/fm/progs/format_dump.c +++ b/fm/progs/format_dump.c @@ -24,23 +24,18 @@ extern int sleep(); extern int (*establish_server_connection_ptr)(FMContext fmc, action_t action); static int -serverAtomicWrite(fd, buffer, length) -void* fd; -void *buffer; -int length; +serverAtomicWrite(void* fd, void *buffer, int length) { char *junk_result_str; int junk_errno; - return os_server_write_func(fd, buffer, length, &junk_errno, + return ffs_server_write_func(fd, buffer, length, &junk_errno, &junk_result_str); } int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { - FMContext context = create_FMcontext(NULL); + FMContext context = create_FMcontext(); char format_dump_char = 'D'; /* if (os_sockets_init_func != NULL) os_sockets_init_func();*/ diff --git a/fm/progs/format_info.c b/fm/progs/format_info.c index 0e2f532f20..bb68c02ed8 100755 --- a/fm/progs/format_info.c +++ b/fm/progs/format_info.c @@ -24,9 +24,7 @@ extern int sleep(); extern int (*establish_server_connection_ptr)(FMContext fmc, action_t action); int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { FMContext context = create_FMcontext(); FMFormat ioformat = NULL; diff --git a/fm/progs/format_server.c b/fm/progs/format_server.c index d2a0a40807..bbb698bac0 100755 --- a/fm/progs/format_server.c +++ b/fm/progs/format_server.c @@ -57,8 +57,7 @@ #include static void -die_with_error(sig) -int sig; +die_with_error(int sig) { fprintf(stderr, "Format server not responding. Timeout.\n"); exit(1); @@ -76,9 +75,7 @@ static int no_log = 0; extern void ffs_set_no_log(int in_no_log); int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { int i; int fs_port = DEFAULT_FS_PORT; diff --git a/fm/progs/server.c b/fm/progs/server.c index e5ba615b03..8730d26b69 100755 --- a/fm/progs/server.c +++ b/fm/progs/server.c @@ -50,6 +50,7 @@ #include "fm.h" #include "fm_internal.h" +#include "io_interface.h" #ifdef HAVE_MALLOC_H #include #endif @@ -137,7 +138,7 @@ extern int select(int width, fd_set * readfds, fd_set * writefds, #else #include #endif -extern time_t time(); +#include extern pid_t getpid(); #ifndef HAVE_GETDOMAINNAME extern int getdomainname(char *name, size_t len); @@ -244,15 +245,11 @@ LOG(format_server fs, char *format,...) } static int -LogAtomicRead(fs, fd, buffer, length) -format_server fs; -void *fd; -void *buffer; -long length; +LogAtomicRead(format_server fs, void *fd, void *buffer, long length) { char *junk_result_str = NULL; int junk_errno; - int ret = os_server_read_func(fd, buffer, length, &junk_errno, + int ret = ffs_server_read_func(fd, buffer, length, &junk_errno, &junk_result_str); if (getenv("BAD_CLIENT") && (drand48() < 0.0001)) sleep(600); @@ -365,7 +362,7 @@ format_server_poll_and_handle(format_server fs) FSClient_force_close(fs->ports[i]); } else if (i != (long) fs->conn_sock_inet) { FD_CLR((unsigned long) i, &fs->fdset); - os_close_func((void *) (long) i); + ffs_close_func((void *) (long) i); } found_one++; } @@ -409,9 +406,7 @@ format_server_poll_and_handle(format_server fs) } static int -format_eq(form1, form2) -IOFormatRep form1; -IOFormatRep form2; +format_eq(IOFormatRep form1, IOFormatRep form2) { int i; int all_zero = 1; @@ -446,9 +441,7 @@ IOFormatRep form2; static int server_format_count = 0; static void -byte_swap(data, size) -char *data; -int size; +byte_swap(char *data, int size) { int i; assert((size % 2) == 0); @@ -478,18 +471,18 @@ dump_formats_to_file(format_server fs) void *id = ioformat->server_ID.value; char *junk_result_str; int junk_errno; - if (os_server_write_func((void *) fd, &id_len, sizeof(id_len), + if (ffs_server_write_func((void *) fd, &id_len, sizeof(id_len), &junk_errno, &junk_result_str) != sizeof(id_len)) { fprintf(stderr, "error writing dump id len\n"); return; } - if (os_server_write_func((void *) fd, id, id_len, &junk_errno, + if (ffs_server_write_func((void *) fd, id, id_len, &junk_errno, &junk_result_str) != id_len) { fprintf(stderr, "error writing dump id \n"); return; } - if (os_server_write_func((void *) fd, rep, rep_len, &junk_errno, + if (ffs_server_write_func((void *) fd, rep, rep_len, &junk_errno, &junk_result_str) != rep_len) { fprintf(stderr, "error writing dump format rep\n"); return; @@ -647,7 +640,7 @@ register_format_to_master(format_server fs, IOFormatRep ioformat) format_rep rep = ioformat->server_format_rep; tmp.len = ntohs(ioformat->server_ID.length); - ret = os_server_write_func(server_fd, &tmp, sizeof(tmp), + ret = ffs_server_write_func(server_fd, &tmp, sizeof(tmp), &errno, &errstr); if (ret != sizeof(tmp)) { close((int)(long)server_fd); @@ -655,7 +648,7 @@ register_format_to_master(format_server fs, IOFormatRep ioformat) LOG(fs, "Write failed1\n"); return; } - ret = os_server_write_func(server_fd, + ret = ffs_server_write_func(server_fd, ioformat->server_ID.value, ioformat->server_ID.length, &errno, &errstr); @@ -671,14 +664,14 @@ register_format_to_master(format_server fs, IOFormatRep ioformat) print_server_ID( (unsigned char *) ioformat->server_ID.value); printf("Writing %d bytes of format rep\n", ntohs(rep->format_rep_length)); } - ret = os_server_write_func(server_fd, &rep->format_rep_length, 2, &errno, &errstr); + ret = ffs_server_write_func(server_fd, &rep->format_rep_length, 2, &errno, &errstr); if (ret != 2) { close((int)(long)server_fd); fs->proxy_context_to_master->server_fd = (void*)-1; LOG(fs, "Write failed3\n"); return; } - ret = os_server_write_func(server_fd, (char*) rep, + ret = ffs_server_write_func(server_fd, (char*) rep, ntohs(rep->format_rep_length), &errno, &errstr); if (ret != ntohs(rep->format_rep_length)) { @@ -723,13 +716,13 @@ get_format_from_master(format_server fs, IOFormatRep ioformat) server_fd = fs->proxy_context_to_master->server_fd; id_size = get[1] = ioformat->server_ID.length; - if ((ret = os_server_write_func(server_fd, &get[0], 2, &errno, &errstr)) != 2) { + if ((ret = ffs_server_write_func(server_fd, &get[0], 2, &errno, &errstr)) != 2) { close((int)(long)server_fd); fs->proxy_context_to_master->server_fd = (void*)-1; LOG(fs, "Write failed2.1, ret is %d\n", ret); return NULL; } - if (os_server_write_func(server_fd, ioformat->server_ID.value, id_size, &errno, &errstr) != id_size) { + if (ffs_server_write_func(server_fd, ioformat->server_ID.value, id_size, &errno, &errstr) != id_size) { close((int)(long)server_fd); fs->proxy_context_to_master->server_fd = (void*)-1; LOG(fs, "Write failed3\n"); @@ -799,12 +792,7 @@ get_format_from_master(format_server fs, IOFormatRep ioformat) static IOFormatRep -find_format(fs, fsc, ioformat, new_format_mode, requested_id_version) -format_server fs; -FSClient fsc; -IOFormatRep ioformat; -int new_format_mode; -int requested_id_version; +find_format(format_server fs, FSClient fsc, IOFormatRep ioformat, int new_format_mode, int requested_id_version) { format_list *list = fs->lists[0]; format_list *last = NULL, *new = NULL; @@ -947,7 +935,7 @@ FSClient_close(FSClient fsc) LOG(fs, "Doing Mutex unLock at Line %d ", __LINE__); pthread_mutex_unlock(&fs->lock); /* moved close outside of the mutex because sometimes it blocks */ - os_close_func((void *) (long) fd); + ffs_close_func((void *) (long) fd); if (fs->fork_threads) pthread_exit(NULL); } @@ -965,7 +953,7 @@ FSClient_force_close(FSClient fsc) shutdown(fd, SHUT_RDWR); // pthread_kill(fsc->handler_thread, 13); pthread_join(fsc->handler_thread, NULL); - os_close_func((void *) (long) fd); + ffs_close_func((void *) (long) fd); fs->portCount--; // fsc->fd = 0; } @@ -1011,16 +999,13 @@ get_internal_format_server_identifier(format_server fs) #define FILE_INT INT4 static int -put_serverAtomicInt(fd, file_int_ptr, fmc) -void *fd; -FILE_INT *file_int_ptr; -FMContext fmc; +put_serverAtomicInt(void *fd, FILE_INT *file_int_ptr, FMContext fmc) { #if SIZEOF_INT == 4 int tmp_value = *file_int_ptr; int junk_errno; char *junk_result_str; - if (os_server_write_func(fd, &tmp_value, 4, &junk_errno, &junk_result_str) != 4) { + if (ffs_server_write_func(fd, &tmp_value, 4, &junk_errno, &junk_result_str) != 4) { printf("SERVER WRITE FAILED, ERRNO = %d\n", junk_errno); return 0; } @@ -1031,16 +1016,13 @@ FMContext fmc; } static int -get_serverAtomicInt(fd, file_int_ptr, byte_reversal) -void *fd; -FILE_INT *file_int_ptr; -int byte_reversal; +get_serverAtomicInt(void *fd, FILE_INT *file_int_ptr, int byte_reversal) { #if SIZEOF_INT == 4 int tmp_value; int junk_errno; char *junk_result_str; - if (os_server_read_func(fd, &tmp_value, 4, &junk_errno, &junk_result_str) != 4) { + if (ffs_server_read_func(fd, &tmp_value, 4, &junk_errno, &junk_result_str) != 4) { printf("SERVER READ FAILED, ERRNO = %d\n", junk_errno); return 0; @@ -1059,10 +1041,7 @@ unix_timeout_read_func(void *conn, void *buffer, int length, int *errno_p, char **result_p); static int -get_serverTimeoutInt(fd, file_int_ptr, byte_reversal) -void *fd; -FILE_INT *file_int_ptr; -int byte_reversal; +get_serverTimeoutInt(void *fd, FILE_INT *file_int_ptr, int byte_reversal) { #if SIZEOF_INT == 4 int tmp_value; @@ -1080,8 +1059,7 @@ int byte_reversal; } static void -server_read_header(fsc) -FSClient fsc; +server_read_header(FSClient fsc) { FILE_INT magic; FILE_INT float_format; @@ -1164,9 +1142,7 @@ FSClient fsc; } static void -format_server_handle_data(fs, fsc) -format_server fs; -FSClient fsc; +format_server_handle_data(format_server fs, FSClient fsc) { char next_action; int input_bytes = 0; @@ -1250,12 +1226,12 @@ FSClient fsc; ret[0] = 'P'; } */ ret[1] = ioformat->server_ID.length; - if (os_server_write_func(fd, &ret[0], 2, NULL, NULL) != 2) { + if (ffs_server_write_func(fd, &ret[0], 2, NULL, NULL) != 2) { LOG(fs, "Close on atomic write fail"); FSClient_close(fsc); return; } - if (os_server_write_func(fd, ioformat->server_ID.value, + if (ffs_server_write_func(fd, ioformat->server_ID.value, ioformat->server_ID.length, NULL, NULL) != ioformat->server_ID.length) { LOG(fs, "Close on atomic write fail 2"); @@ -1401,7 +1377,7 @@ FSClient fsc; fsc->formats_fetched++; LOG(fs, "Doing Mutex unLock at Line %d ", __LINE__); pthread_mutex_unlock(&fs->lock); - ret = os_server_write_func(fd, &tmp, sizeof(tmp), + ret = ffs_server_write_func(fd, &tmp, sizeof(tmp), &errno, &errstr); if (ret != sizeof(tmp)) { LOG(fs, "Close on atomic read fail g3"); @@ -1411,7 +1387,7 @@ FSClient fsc; if ((ioformat != NULL) && (ioformat->server_format_rep != NULL)) { format_rep rep = ioformat->server_format_rep; - ret = os_server_write_func(fd, + ret = ffs_server_write_func(fd, (char *) rep + sizeof(rep->format_rep_length), ntohs(rep->format_rep_length) - sizeof(rep->format_rep_length), &errno, &errstr); @@ -1449,13 +1425,13 @@ FSClient fsc; tmp = htonl(out_count); LOG(fs, "Doing Mutex unLock at Line %d ", __LINE__); pthread_mutex_unlock(&fs->lock); - os_server_write_func(fd, &tmp, 4, &junk_errno, + ffs_server_write_func(fd, &tmp, 4, &junk_errno, &junk_str); for (i = 0; i < out_count; i++) { tmp = htonl(out_list[i].length); - os_server_write_func(fd, &tmp, 4, + ffs_server_write_func(fd, &tmp, 4, &junk_errno, &junk_str); - os_server_write_func(fd, out_list[i].value, + ffs_server_write_func(fd, out_list[i].value, out_list[i].length, &junk_errno, &junk_str); } @@ -1471,17 +1447,17 @@ FSClient fsc; int tmp; tmp = htonl(out_count); - os_server_write_func(fd, &tmp, 4, &junk_errno, + ffs_server_write_func(fd, &tmp, 4, &junk_errno, &junk_str); for (i = 0; i < out_count; i++) { char *time_str; - os_server_write_func(fd, &hostlist[i].ip_addr, 4, + ffs_server_write_func(fd, &hostlist[i].ip_addr, 4, &junk_errno, &junk_str); time_str = (char *) ctime(&hostlist[i].intro_time); tmp = htonl(strlen(time_str) + 1); - os_server_write_func(fd, &tmp, 4, &junk_errno, + ffs_server_write_func(fd, &tmp, 4, &junk_errno, &junk_str); - os_server_write_func(fd, time_str, strlen(time_str) + 1, + ffs_server_write_func(fd, time_str, strlen(time_str) + 1, &junk_errno, &junk_str); } } @@ -1556,7 +1532,7 @@ FSClient fsc; printf("ping from client\n"); } /* send it back */ - os_server_write_func(fd, &next_action, 1, &junk_errno, + ffs_server_write_func(fd, &next_action, 1, &junk_errno, &junk_str); break; case 'P': @@ -1564,7 +1540,7 @@ FSClient fsc; printf("ping/request for ID from client\n"); } /* send it back */ - os_server_write_func(fd, &fs->format_server_identifier, 4, &junk_errno, + ffs_server_write_func(fd, &fs->format_server_identifier, 4, &junk_errno, &junk_str); break; } @@ -1734,7 +1710,7 @@ format_server_create() if (fs == NULL) return NULL; -/* if (os_sockets_init_func != NULL) os_sockets_init_func();*/ +/* if (ffs_sockets_init_func != NULL) ffs_sockets_init_func();*/ my_pid = (int) getpid(); @@ -2023,9 +1999,7 @@ format_server_accept_conn_sock(format_server fs, void *conn_sock) } static time_t -get_time_for_host(ip_addr, hostname) -struct in_addr ip_addr; -char *hostname; +get_time_for_host(struct in_addr ip_addr, char *hostname) { int i; if (hostlist == NULL) { @@ -2053,9 +2027,7 @@ static char **postfix_list = NULL; #define GRACE_PERIOD_SEC 60 * 60 * 24 * 3 static void -out_domain_rejection(fd, fsc) -int fd; -FSClient fsc; +out_domain_rejection(int fd, FSClient fsc) { struct sockaddr sock_addr; int sock_len = sizeof(sock_addr); @@ -2293,10 +2265,7 @@ dump_stats_to_log(format_server server_fs) } static FMFormat -register_server_format(fs, iocontext, str_list) -format_server fs; -FMContext iocontext; -FMStructDescList str_list; +register_server_format(format_server fs, FMContext iocontext, FMStructDescList str_list) { FMFormat ioformat = register_data_format(iocontext, str_list); IOFormatRep iofr = malloc(sizeof(*iofr)); @@ -2503,18 +2472,18 @@ send_stats(FSClient fsc) } free(start); tmp = htonl(id_len); - os_server_write_func(fsc->fd, &tmp, 4, &junk_errno, + ffs_server_write_func(fsc->fd, &tmp, 4, &junk_errno, &junk_str); - os_server_write_func(fsc->fd, server_ID, id_len, + ffs_server_write_func(fsc->fd, server_ID, id_len, &junk_errno, &junk_str); tmp = htonl(rep_len); - os_server_write_func(fsc->fd, &tmp, 4, &junk_errno, + ffs_server_write_func(fsc->fd, &tmp, 4, &junk_errno, &junk_str); - os_server_write_func(fsc->fd, server_rep, rep_len, + ffs_server_write_func(fsc->fd, server_rep, rep_len, &junk_errno, &junk_str); tmp = htonl(stats_block_len); - os_server_write_func(fsc->fd, &tmp, 4, &junk_errno, + ffs_server_write_func(fsc->fd, &tmp, 4, &junk_errno, &junk_str); - os_server_write_func(fsc->fd, stats_block, stats_block_len, + ffs_server_write_func(fsc->fd, stats_block, stats_block_len, &junk_errno, &junk_str); } diff --git a/fm/server_acts.c b/fm/server_acts.c index 3a428d08da..3a5e16c2dc 100755 --- a/fm/server_acts.c +++ b/fm/server_acts.c @@ -26,8 +26,6 @@ #ifdef HAVE_SYS_SOCKET_H #include #endif -#include -#include #ifdef HAVE_SOCKLIB_H #include "sockLib.h" #include "hostLib.h" @@ -39,6 +37,8 @@ #ifdef HAVE_SYS_UN_H #include #endif +#include +#include #include #include #include @@ -56,6 +56,7 @@ #include "assert.h" #include "fm.h" #include "fm_internal.h" +#include "io_interface.h" #else #include "config.h" @@ -96,6 +97,10 @@ typedef enum {Raw, Authenticated} Server_Protocol; #define CIPHER_BUF_SIZE 1024 +#ifdef _MSC_VER +#define strncasecmp _strnicmp +#define strcasecmp _stricmp +#endif static int fill_hostaddr(void *addr, char *hostname, Server_Protocol *protocol) @@ -160,11 +165,9 @@ extern int server_write_header(FMContext fmc, int enc_len, unsigned char *enc_buffer); extern int -establish_server_connection(iofile, action) -FMContext iofile; -action_t action; +establish_server_connection(FMContext iofile, action_t action) { - int sock; + SOCKET sock; int ret; Server_Protocol protocol = Raw; int conn_is_dead = 0; @@ -174,14 +177,7 @@ action_t action; #else struct socket *socket; #endif - - if (format_server_verbose == -1) { - if (getenv("FORMAT_SERVER_VERBOSE") == NULL) { - format_server_verbose = 0; - } else { - format_server_verbose = 1; - } - } + if (ffs_sockets_init_func) ffs_sockets_init_func(); if (iofile->server_fd != (void*)-1) { #ifndef MODULE @@ -198,12 +194,12 @@ action_t action; #endif timeout.tv_sec = 0; timeout.tv_usec = 0; - FD_SET( (int)(long)iofile->server_fd, &rd_set); + FD_SET( (int)(intptr_t)iofile->server_fd, &rd_set); ret = select(FD_SETSIZE, &rd_set, (fd_set*)NULL, (fd_set *) NULL, &timeout); if (ret == -1) { if (format_server_verbose) - printf("Dead connection, Select return is %d, server fd is %ld, errno is %d\n", ret, (long)iofile->server_fd, errno); + printf("Dead connection, Select return is %d, server fd is %p, errno is %d\n", ret, (void*)(intptr_t)iofile->server_fd, errno); conn_is_dead = 1; } #else @@ -323,9 +319,9 @@ action_t action; setsockopt(sock, IPPROTO_TCP, TCP_NODELAY, (char *) &delay_value, sizeof(delay_value)); delay_value = 1; - setsockopt(sock, SOL_SOCKET, SO_KEEPALIVE, &delay_value, sizeof(delay_value)); + setsockopt(sock, SOL_SOCKET, SO_KEEPALIVE, (const char *)& delay_value, sizeof(delay_value)); #endif - iofile->server_fd = (void*) (long) sock; + iofile->server_fd = (void*) (intptr_t) sock; if (protocol == Authenticated) { unsigned char outbuf[CIPHER_BUF_SIZE]; diff --git a/fm/tests/align_test.c b/fm/tests/align_test.c index a69bb05837..8fbd3114e8 100644 --- a/fm/tests/align_test.c +++ b/fm/tests/align_test.c @@ -135,9 +135,7 @@ do_test(FMStructDescList list) int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { if (argc > 1) { if (strcmp(argv[1], "-v") == 0) { diff --git a/fm/tests/compat_test.c b/fm/tests/compat_test.c index 757456dd05..0436aa80a9 100644 --- a/fm/tests/compat_test.c +++ b/fm/tests/compat_test.c @@ -135,11 +135,9 @@ do_test(FMStructDescList list) int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { - FMContext context = create_local_FMcontext(NULL); + FMContext context = create_local_FMcontext(); FMFormat ioformat1, ioformat2; FMStructDescRec str_list[5]; diff --git a/fm/tests/format_test.c b/fm/tests/format_test.c index 2ebb110af4..66fff8a917 100755 --- a/fm/tests/format_test.c +++ b/fm/tests/format_test.c @@ -3,22 +3,21 @@ #include #include "config.h" +#ifdef HAVE_UNISTD_H +#include +#endif #include #include "fm.h" #include "fm_internal.h" #ifdef HAVE_WINDOWS_H #include #define sleep(x) Sleep(1000*x) -#else -extern int sleep(); #endif #include "test_funcs.h" int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { int continuous_test = 0; @@ -53,7 +52,7 @@ char **argv; unsigned char id[] = {02, 00, 00, 37, 103, 189, 231, 165, 33, 254, 42, 32}; printf("Doing get test\n"); first_rec_ioformat = FMformat_from_ID(context, (char *) &id[0]); - printf("format is %lx\n", (long)first_rec_ioformat); + printf("format is %p\n", first_rec_ioformat); return 0; } if (XML_test) { @@ -75,7 +74,7 @@ char **argv; dump_FMFormat(first_rec_ioformat); } else if (!continuous_test && !restart_test) { FMContext context = create_FMcontext(); - FMContext local_context = create_local_FMcontext(NULL); + FMContext local_context = create_local_FMcontext(); FMFormat first_rec_ioformat; FMcontext_allow_self_formats(context); str_list[0].format_name = "first format"; @@ -84,7 +83,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("format is %lx\n", (long)first_rec_ioformat); + printf("format is %p\n", first_rec_ioformat); if (first_rec_ioformat != NULL) { int id_len, i; char *id =get_server_ID_FMformat(first_rec_ioformat, &id_len); @@ -104,7 +103,7 @@ char **argv; print_server_ID((unsigned char *)id); } } else if (restart_test) { - FMContext static_context = create_FMcontext(NULL); + FMContext static_context = create_FMcontext(); while (1) { if (format_server_restarted(static_context)) { printf("Format server was restarted\n"); @@ -112,9 +111,9 @@ char **argv; sleep(120); } } else { - FMContext static_context = create_FMcontext(NULL); + FMContext static_context = create_FMcontext(); while (1) { - FMContext context = create_FMcontext(NULL); + FMContext context = create_FMcontext(); FMFormat first_rec_ioformat; if (format_server_restarted(static_context)) { @@ -126,7 +125,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("first format is %lx\n", (long)first_rec_ioformat); + printf("first format is %p\n", first_rec_ioformat); sleep(10); @@ -139,7 +138,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("second format is %lx\n", (long)first_rec_ioformat); + printf("second format is %p\n", first_rec_ioformat); sleep(20); @@ -152,7 +151,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("third format is %lx\n", (long)first_rec_ioformat); + printf("third format is %p\n", first_rec_ioformat); sleep(30); @@ -165,7 +164,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("fourth format is %lx\n", (long)first_rec_ioformat); + printf("fourth format is %p\n", first_rec_ioformat); sleep(40); if (format_server_restarted(static_context)) { @@ -177,7 +176,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("embedded format is %lx\n", (long)first_rec_ioformat); + printf("embedded format is %p\n", first_rec_ioformat); sleep(50); @@ -194,7 +193,7 @@ char **argv; str_list[1].opt_info = NULL; str_list[2].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("fifth format is %lx\n", (long)first_rec_ioformat); + printf("fifth format is %p\n", first_rec_ioformat); sleep(60); @@ -207,7 +206,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("later format is %lx\n", (long)first_rec_ioformat); + printf("later format is %p\n", first_rec_ioformat); sleep(70); @@ -220,7 +219,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("later2 format is %lx\n", (long)first_rec_ioformat); + printf("later2 format is %p\n", first_rec_ioformat); sleep(80); @@ -237,7 +236,7 @@ char **argv; str_list[1].opt_info = NULL; str_list[2].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("nested format is %lx\n", (long)first_rec_ioformat); + printf("nested format is %p\n", first_rec_ioformat); sleep(90); @@ -254,7 +253,7 @@ char **argv; str_list[1].opt_info = NULL; str_list[2].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("sixth format is %lx\n", (long)first_rec_ioformat); + printf("sixth format is %p\n", first_rec_ioformat); sleep(100); @@ -262,7 +261,7 @@ char **argv; printf("Format server was restarted\n"); } first_rec_ioformat = register_data_format(context, str_list); - printf("eventvec format is %lx\n", (long)first_rec_ioformat); + printf("eventvec format is %p\n", first_rec_ioformat); sleep(110); @@ -279,7 +278,7 @@ char **argv; str_list[1].opt_info = NULL; str_list[2].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("ninth format is %lx\n", (long)first_rec_ioformat); + printf("ninth format is %p\n", first_rec_ioformat); sleep(120); @@ -292,7 +291,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("string array format is %lx\n", (long)first_rec_ioformat); + printf("string array format is %p\n", first_rec_ioformat); sleep(130); free_FMcontext(context); diff --git a/fm/tests/scale_test.c b/fm/tests/scale_test.c index 241ec00531..5e06f7f20b 100644 --- a/fm/tests/scale_test.c +++ b/fm/tests/scale_test.c @@ -5,7 +5,6 @@ #include "config.h" #include #include -#include #include "fm.h" #include "ffs.h" @@ -21,7 +20,7 @@ extern int sleep(); char *gen_name(int i) { char tmp_name[128]; - sprintf(tmp_name, "SST_Variable_FieldName that's really really long because I can't imagine why %d", i); + snprintf(tmp_name, sizeof(tmp_name), "SST_Variable_FieldName that's really really long because I can't imagine why %d", i); return strdup(tmp_name); } @@ -32,10 +31,13 @@ struct base_elem { int64_t *array2; }; +#ifdef _MSC_VER +// this is not important on windows +#define clock_gettime(x,y) +#endif + int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { FMStructDescRec str_list[5]; @@ -62,12 +64,12 @@ char **argv; list[cur_count+1].field_size = 8; list[cur_count+1].field_offset = (cur_count+1) * 8; list[cur_count+2].field_name = n3; - sprintf(tmp, "integer[%s]", n1); + snprintf(tmp, sizeof(tmp), "integer[%s]", n1); list[cur_count+2].field_type = strdup(tmp); list[cur_count+2].field_size = 8; list[cur_count+2].field_offset = (cur_count+2) * 8; list[cur_count+3].field_name = n4; - sprintf(tmp, "integer[%s]", n2); + snprintf(tmp, sizeof(tmp), "integer[%s]", n2); list[cur_count+3].field_type = strdup(tmp); list[cur_count+3].field_size = 8; list[cur_count+3].field_offset = (cur_count+3) * 8; diff --git a/fm/tests/self_format_test.c b/fm/tests/self_format_test.c index 3c9dc57a3a..ab031b1e94 100755 --- a/fm/tests/self_format_test.c +++ b/fm/tests/self_format_test.c @@ -9,16 +9,14 @@ #ifdef HAVE_WINDOWS_H #include #define sleep(x) Sleep(1000*x) -#else -extern int sleep(); #endif - +#ifdef HAVE_UNISTD_H +#include +#endif #include "test_funcs.h" int -main(argc, argv) -int argc; -char **argv; +main(int argc, char **argv) { FMContext context = create_local_FMcontext(); @@ -67,7 +65,7 @@ char **argv; first_rec_ioformat = register_data_format(context, str_list); ID = get_server_ID_FMformat (first_rec_ioformat, &id_length); print_server_ID((unsigned char *)ID); - printf("format is %lx\n", (long)first_rec_ioformat); + printf("format is %p\n", first_rec_ioformat); } else if (restart_test) { FMContext static_context = create_FMcontext(); while (1) { @@ -90,7 +88,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("first format is %lx\n", (long)first_rec_ioformat); + printf("first format is %p\n", first_rec_ioformat); sleep(10); @@ -103,7 +101,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("second format is %lx\n", (long)first_rec_ioformat); + printf("second format is %p\n", first_rec_ioformat); sleep(20); @@ -116,7 +114,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("third format is %lx\n", (long)first_rec_ioformat); + printf("third format is %p\n", first_rec_ioformat); sleep(30); @@ -129,7 +127,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("fourth format is %lx\n", (long)first_rec_ioformat); + printf("fourth format is %p\n", first_rec_ioformat); sleep(40); if (format_server_restarted(static_context)) { @@ -141,7 +139,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("embedded format is %lx\n", (long)first_rec_ioformat); + printf("embedded format is %p\n", first_rec_ioformat); sleep(50); @@ -158,7 +156,7 @@ char **argv; str_list[1].opt_info = NULL; str_list[2].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("fifth format is %lx\n", (long)first_rec_ioformat); + printf("fifth format is %p\n", first_rec_ioformat); sleep(60); @@ -171,7 +169,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("later format is %lx\n", (long)first_rec_ioformat); + printf("later format is %p\n", first_rec_ioformat); sleep(70); @@ -184,7 +182,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("later2 format is %lx\n", (long)first_rec_ioformat); + printf("later2 format is %p\n", first_rec_ioformat); sleep(80); @@ -201,7 +199,7 @@ char **argv; str_list[1].opt_info = NULL; str_list[2].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("nested format is %lx\n", (long)first_rec_ioformat); + printf("nested format is %p\n", first_rec_ioformat); sleep(90); @@ -218,7 +216,7 @@ char **argv; str_list[1].opt_info = NULL; str_list[2].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("sixth format is %lx\n", (long)first_rec_ioformat); + printf("sixth format is %p\n", first_rec_ioformat); sleep(100); @@ -226,7 +224,7 @@ char **argv; printf("Format server was restarted\n"); } first_rec_ioformat = register_data_format(context, str_list); - printf("eventvec format is %lx\n", (long)first_rec_ioformat); + printf("eventvec format is %p\n", first_rec_ioformat); sleep(110); @@ -243,7 +241,7 @@ char **argv; str_list[1].opt_info = NULL; str_list[2].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("ninth format is %lx\n", (long)first_rec_ioformat); + printf("ninth format is %p\n", first_rec_ioformat); sleep(120); @@ -256,7 +254,7 @@ char **argv; str_list[0].opt_info = NULL; str_list[1].format_name = NULL; first_rec_ioformat = register_data_format(context, str_list); - printf("string array format is %lx\n", (long)first_rec_ioformat); + printf("string array format is %p\n", first_rec_ioformat); sleep(130); free_FMcontext(context); diff --git a/fm/tests/test_funcs.c b/fm/tests/test_funcs.c index f44518ebe8..bce5c531e6 100755 --- a/fm/tests/test_funcs.c +++ b/fm/tests/test_funcs.c @@ -144,8 +144,7 @@ char *event_vec_xml = "\ \n"; int -first_rec_eq(r1, r2) -first_rec *r1, *r2; +first_rec_eq(first_rec *r1, first_rec *r2) { if (r1->integer_field != r2->integer_field) return 0; @@ -157,8 +156,7 @@ first_rec *r1, *r2; } int -second_rec_eq(r1, r2) -second_rec *r1, *r2; +second_rec_eq(second_rec *r1, second_rec *r2) { if (r1->integer_field != r2->integer_field) { printf("integer_field 1 is %d (0x%x), integer_field 2 is %d (0x%x)\n", @@ -201,8 +199,7 @@ second_rec *r1, *r2; } int -third_rec_eq(r1, r2) -third_rec *r1, *r2; +third_rec_eq(third_rec *r1, third_rec *r2) { if (r1->integer_field != r2->integer_field) { printf("integer field 1 is %d (0x%x), integer_field 2 is %d (0x%x)\n", @@ -276,8 +273,7 @@ third_rec *r1, *r2; #define ARRAY_SIZE 14 int -fourth_rec_eq(r1, r2) -fourth_rec *r1, *r2; +fourth_rec_eq(fourth_rec *r1, fourth_rec *r2) { int i, j; if (r1->ifield != r2->ifield) { @@ -302,8 +298,7 @@ fourth_rec *r1, *r2; } int -emb_rec_eq(r1, r2) -embedded_rec *r1, *r2; +emb_rec_eq(embedded_rec *r1, embedded_rec *r2) { if (r1->ifield != r2->ifield) { printf("ifield 1 is %d (%x), ifield 2 is %d (%x)\n", @@ -334,8 +329,7 @@ embedded_rec *r1, *r2; } int -fifth_rec_eq(r1, r2) -fifth_rec *r1, *r2; +fifth_rec_eq(fifth_rec *r1, fifth_rec *r2) { int i; for (i = 0; i < 4; i++) { @@ -348,8 +342,7 @@ fifth_rec *r1, *r2; } int -sixth_rec_eq(r1, r2) -sixth_rec *r1, *r2; +sixth_rec_eq(sixth_rec *r1, sixth_rec *r2) { int i; if (r1->icount != r2->icount) @@ -394,8 +387,7 @@ sixth_rec *r1, *r2; } int -nested_rec_eq(r1, r2) -nested_rec *r1, *r2; +nested_rec_eq(nested_rec *r1, nested_rec *r2) { if (r1->integer_field != r2->integer_field) { printf("nested, R1 integer = %d, R2 %d\n", r1->integer_field, @@ -425,8 +417,7 @@ nested_rec *r1, *r2; } int -later_rec_eq(r1, r2) -later_rec *r1, *r2; +later_rec_eq(later_rec *r1, later_rec *r2) { if (r1->integer_field != r2->integer_field) return 0; @@ -444,8 +435,7 @@ later_rec *r1, *r2; } int -ninth_rec_eq(r1, r2) -ninth_rec *r1, *r2; +ninth_rec_eq(ninth_rec *r1, ninth_rec *r2) { int i; if (r1->vec_length != r2->vec_length) @@ -464,8 +454,7 @@ ninth_rec *r1, *r2; } int -string_array_eq(r1, r2) -string_array_rec *r1, *r2; +string_array_eq(string_array_rec *r1, string_array_rec *r2) { int i; if (r1->array_len != r2->array_len) @@ -1058,9 +1047,9 @@ init_written_data() k = 0; for (i = 1; i < 20; i += 5) { - rec6_array[k].string = malloc(10); - memset(rec6_array[k].string, 0, 10); - sprintf(rec6_array[k].string, "variant%d", i); + rec6_array[k].string = malloc(20); + memset(rec6_array[k].string, 0, 20); + snprintf(rec6_array[k].string, 20, "variant%d", i); rec6_array[k].icount = 2 * i; rec6_array[k].var_int_array = malloc(sizeof(((sixth_rec_ptr) 0)->var_int_array[0]) * rec6_array[k].icount); rec6_array[k].var_double_array = malloc(sizeof(double) * rec6_array[k].icount); @@ -1071,9 +1060,9 @@ init_written_data() rec6_array[k].var_string_array[j].integer_field = 345 * j; rec6_array[k].var_string_array[j].short_field = j; rec6_array[k].var_string_array[j].long_field = 785 * j; - rec6_array[k].var_string_array[j].string = malloc(15); - memset(rec6_array[k].var_string_array[j].string, 0, 15); - sprintf(rec6_array[k].var_string_array[j].string, + rec6_array[k].var_string_array[j].string = malloc(25); + memset(rec6_array[k].var_string_array[j].string, 0, 25); + snprintf(rec6_array[k].var_string_array[j].string, 25, "substring%d", j); rec6_array[k].var_string_array[j].double_field = 3.1415 * j; rec6_array[k].var_string_array[j].char_field = 'a' + 2 * j; diff --git a/fm/tests/test_funcs.h b/fm/tests/test_funcs.h index bf7fea40fc..d0eecba4f5 100755 --- a/fm/tests/test_funcs.h +++ b/fm/tests/test_funcs.h @@ -332,3 +332,7 @@ extern char *nested_xml; extern char *event_xml; extern char *event_vec_xml; extern char *multi_array_xml; +#if defined(_MSC_VER) +#define strdup _strdup +#define snprintf sprintf_s +#endif diff --git a/fm/unix_io.c b/fm/unix_io.c index ffbb854251..47c6eacbbf 100755 --- a/fm/unix_io.c +++ b/fm/unix_io.c @@ -34,12 +34,7 @@ extern int select(int width, fd_set *readfds, fd_set *writefds, #endif static int -unix_read_func(conn, buffer, length, errno_p, result_p) -void *conn; -void *buffer; -int length; -int *errno_p; -char **result_p; +unix_read_func(void *conn, void *buffer, size_t length, int *errno_p, char **result_p) { int left = length; int iget; @@ -89,12 +84,7 @@ char **result_p; } int -unix_timeout_read_func(conn, buffer, length, errno_p, result_p) -void *conn; -void *buffer; -int length; -int *errno_p; -char **result_p; +unix_timeout_read_func(void *conn, void *buffer, size_t length, int *errno_p, char **result_p) { int left = length; int count = 2; @@ -172,12 +162,7 @@ char **result_p; } static int -unix_write_func(conn, buffer, length, errno_p, result_p) -void *conn; -void *buffer; -int length; -int *errno_p; -char **result_p; +unix_write_func(void *conn, void *buffer, size_t length, int *errno_p, char **result_p) { int left = length; int iget = 0; @@ -204,23 +189,19 @@ char **result_p; } static int -unix_close_func(conn) -void *conn; +unix_close_func(void *conn) { return close((int) (long) conn); } static void * -unix_file_open_func(path, flag_str, input, output) -const char *path; -const char *flag_str; -int *input; -int *output; +unix_file_open_func(const char *path, const char *flag_str, int *input, int *output) { int flags; int file_id; long tmp_flags = (long)flag_str; - *input = *output = 0; + if (input) *input = 0; + if (output) *output = 0; tmp_flags &= ~(O_TRUNC); tmp_flags &= ~(O_CREAT); @@ -228,15 +209,19 @@ int *output; (O_WRONLY == tmp_flags)) { /* must be old style call */ flags = (long)flag_str; - *input = (O_RDONLY == (long)flag_str); - *output = (O_WRONLY & (long)flag_str); + if (input) *input = (O_RDONLY == (long)flag_str); + if (output) *output = (O_WRONLY & (long)flag_str); } else { if (strcmp(flag_str, "r") == 0) { flags = O_RDONLY; - *input = 1; + if (input) *input = 1; } else if (strcmp(flag_str, "w") == 0) { flags = O_WRONLY | O_CREAT | O_TRUNC; - *output = 1; + if (output) *output = 1; + } else if (strcmp(flag_str, "a") == 0) { + flags = O_RDWR; + if (output) *output = 1; + if (input) *input = 1; } else { fprintf(stderr, "Open flags value not understood for file \"%s\"\n", path); @@ -252,8 +237,98 @@ int *output; } static int -unix_poll_func(conn) -void *conn; +unix_writev_func(void *conn, struct iovec *iov, int iovcnt, int *errno_p, char **result_p) +{ + int fd = (int) (long) conn; + int left = 0; + int iget = 0; + int iovleft, i; + + iovleft = iovcnt; + + /* sum lengths */ + for (i=0; i 0) { + iget = writev(fd, (struct iovec *) &iov[iovcnt - iovleft], iovleft); + if (iget == -1) { + if ((errno != EWOULDBLOCK) && (errno != EAGAIN)) { + /* serious error */ + if (errno_p) *errno_p = errno; + return (iovcnt - iovleft); + } else { + iget = 0; + } + } + if (iget == left) + return iovcnt; + + left -= iget; + while (iget > 0) { + iget -= iov[iovcnt - iovleft].iov_len; + iovleft--; + } + + if (iget < 0) { + /* + * Only part of the last block was written. Modify IO + * vector to indicate the remaining block to be written. + */ + /* restore iovleft and iget to cover remaining block*/ + iovleft++; + iget += iov[iovcnt - iovleft].iov_len; + + /* adjust count down and base up by number of bytes written */ + iov[iovcnt-iovleft].iov_len -= iget; + iov[iovcnt-iovleft].iov_base = + (char*)(iov[iovcnt-iovleft].iov_base) + iget; + } + } + return iovcnt; +} + +static int +unix_readv_func(void *conn, struct iovec *iov, int icount, int *errno_p, char **result_p) +{ + int orig_icount = icount; + int fd = (int) (long)conn; + int iget; + + while (icount > 0) { + iget = readv(fd, (struct iovec *) iov, icount); + if (iget == 0) { + if (result_p) *result_p = "End of file"; + if (errno_p) *errno_p = 0; + return 0; /* end of file */ + } else if (iget == -1) { + if (errno_p) *errno_p = errno; + if ((errno != EWOULDBLOCK) && + (errno != EAGAIN) && + (errno != EINTR)) { + /* serious error */ + return -1; + } else { + if (errno_p) *errno_p = 0; + iget = 0; + } + } + while (iget > 0) { + if (iov[0].iov_len <= iget) { + iget -= iov[0].iov_len; + iov++; + icount--; + } else { + iov[0].iov_len -= iget; + iov[0].iov_base = ((char*)iov[0].iov_base) + iget; + iget = 0; + } + } + } + return orig_icount; +} + +static int +unix_poll_func(void *conn) { int fd = (int) (long) conn; struct timeval time; @@ -273,19 +348,28 @@ void *conn; return (ret_val > 0); } -IOinterface_func os_file_read_func = unix_read_func; -IOinterface_func os_file_write_func = unix_write_func; +static int +unix_file_lseek_func (void *file, size_t pos, int origin) +{ + return lseek((intptr_t)file, (long)pos, origin); +} + +IOinterface_func ffs_file_read_func = unix_read_func; +IOinterface_func ffs_file_write_func = unix_write_func; +IOinterface_funcv ffs_file_readv_func = unix_readv_func; +IOinterface_funcv ffs_file_writev_func = unix_writev_func; +IOinterface_lseek ffs_file_lseek_func = (IOinterface_lseek)unix_file_lseek_func; -IOinterface_func os_read_func = unix_read_func; -IOinterface_func os_write_func = unix_write_func; +IOinterface_func ffs_read_func = unix_read_func; +IOinterface_func ffs_write_func = unix_write_func; #ifndef IOV_MAX #define IOV_MAX 16 #endif -int os_max_iov = IOV_MAX; -IOinterface_close os_close_func = unix_close_func; -IOinterface_poll os_poll_func = unix_poll_func; -IOinterface_open os_file_open_func = unix_file_open_func; -IOinterface_func os_server_read_func = unix_read_func; -IOinterface_func os_server_write_func = unix_write_func; -IOinterface_init os_sockets_init_func = NULL; +int ffs_max_iov = IOV_MAX; +IOinterface_close ffs_close_func = unix_close_func; +IOinterface_poll ffs_poll_func = unix_poll_func; +IOinterface_open ffs_file_open_func = unix_file_open_func; +IOinterface_func ffs_server_read_func = unix_read_func; +IOinterface_func ffs_server_write_func = unix_write_func; +IOinterface_init ffs_sockets_init_func = NULL; diff --git a/fm/xml.c b/fm/xml.c index e6a71f3ff3..8a7d3927d7 100755 --- a/fm/xml.c +++ b/fm/xml.c @@ -53,7 +53,7 @@ generic_field_to_XML(FMFormat format, int field, static int is_tag(char *tag, char *xml_stream) { - int len = strlen(tag); + int len = (int) strlen(tag); if (strncmp(xml_stream, tag, len) != 0) return 0; if (isalnum((int)xml_stream[len])) return 0; /* not end of stream tag */ if (xml_stream[len] == '_') return 0; @@ -92,11 +92,11 @@ expand_dstring(ffs_dstring ds, int min) static void dcatstr(ffs_dstring ds, char *str) { - int len = strlen(str); + int len = (int) strlen(str); if (ds->length + len + 1 > ds->max_alloc) { expand_dstring(ds, len + 1); } - strcat(&ds->string[ds->length], str); + strncat(&ds->string[ds->length], str, ds->max_alloc); ds->length += len; } @@ -120,11 +120,7 @@ record_to_XML_string(FMFormat format, void *data, int encoded) } static ffs_dstring -raw_to_XML_string(c, format, data, encoded) -FMContext c; -FMFormat format; -void *data; -int encoded; +raw_to_XML_string(FMContext c, FMFormat format, void *data, int encoded) { int index; ffs_dstring ds; @@ -146,10 +142,7 @@ int encoded; } extern void -dump_raw_IOrecord_as_XML(c, format, data) -FMContext c; -FMFormat format; -void *data; +dump_raw_IOrecord_as_XML(FMContext c, FMFormat format, void *data) { ffs_dstring dstr = raw_to_XML_string(c, format, data, 1); printf("%s", dstr->string); @@ -233,9 +226,9 @@ internal_record_to_XML_string(FMFormat format, void *data, void *string_base, ff case integer_type: { char tmp[64]; - long l; + ssize_t l; l = get_FMlong(field_ptr, base); - sprintf(tmp, "%ld", l); + snprintf(tmp, sizeof(tmp), "%zd", l); dcatstr(ds, tmp); break; } @@ -243,15 +236,15 @@ internal_record_to_XML_string(FMFormat format, void *data, void *string_base, ff case enumeration_type: { char tmp[64]; - unsigned long l; + size_t l; l = get_FMulong(field_ptr, base); - sprintf(tmp, "%lu", l); + snprintf(&tmp[0], sizeof(tmp), "%zu", l); dcatstr(ds, tmp); break; } case boolean_type: { - unsigned long l; + size_t l; l = get_FMulong(field_ptr, base); if (l) dcatstr(ds, "true"); @@ -264,7 +257,7 @@ internal_record_to_XML_string(FMFormat format, void *data, void *string_base, ff char tmp[64]; double d; d = get_FMdouble(field_ptr, base); - sprintf(tmp, "%g", d); + snprintf(tmp, sizeof(tmp), "%g", d); dcatstr(ds, tmp); break; } @@ -286,7 +279,7 @@ internal_record_to_XML_string(FMFormat format, void *data, void *string_base, ff case unknown_type: { int field = info[i].field_num; - int offset = field_ptr->offset; + size_t offset = field_ptr->offset; FMFormat sub = format->field_subformats[field]; if (sub != NULL) { internal_record_to_XML_string(sub, (char*)base+offset, @@ -354,7 +347,7 @@ get_field_num(int* field_num_ptr, FMFormat format, char *left, char *right) } extern void * -get_optinfo_FMFormat(FMFormat format, int info_type, int *len_p) +get_optinfo_FMFormat(FMFormat format, int info_type, size_t *len_p) { int i = 0; if (format->opt_info == NULL) return NULL; @@ -373,27 +366,27 @@ extern FMfloat_format fm_my_float_format; static xml_output_info build_XML_output_info(FMFormat format) { - int i = 0, last_mark; + ssize_t i = 0, last_mark; char *XML_opt_data = NULL; - int XML_data_len = 0; + size_t XML_data_len = 0; xml_output_info info = NULL; - int info_count = 0; + size_t info_count = 0; XML_opt_data = get_optinfo_FMFormat(format, 0x584D4C20, &XML_data_len); if (XML_opt_data == NULL) return NULL; last_mark = 0; i = -1; - while (++i < XML_data_len) { + while (++i < (intptr_t) XML_data_len) { if (XML_opt_data[i] != '<') { continue; } if (is_tag("/FFS:array", &XML_opt_data[i+1])) { /* array terminatfmn */ - int post_len = i - last_mark + 1; + ssize_t post_len = i - last_mark + 1; info[info_count].element_poststring = malloc(post_len); - strncpy(info[info_count].element_poststring, - &XML_opt_data[last_mark], post_len -1); + strncpy(info[info_count].element_poststring, + &XML_opt_data[last_mark], post_len - 1); info[info_count].element_poststring[post_len -1] = 0; info_count++; i += 13; @@ -401,7 +394,7 @@ build_XML_output_info(FMFormat format) continue; } if (is_tag("FFS:data", &XML_opt_data[i+1])) { - int pre_len = i - last_mark; + size_t pre_len = i - last_mark; FMdata_type data_type; int field_num; long junk; @@ -446,7 +439,7 @@ build_XML_output_info(FMFormat format) } if (is_tag("FFS:array", &XML_opt_data[i+1])) { /* array terminatfmn */ - int pre_len = i - last_mark; + size_t pre_len = i - last_mark; char *right_end = strchr(&XML_opt_data[i+10], '>'); char *prestring = malloc(pre_len + 1); @@ -466,7 +459,7 @@ build_XML_output_info(FMFormat format) } if (is_tag("FFS:array_data_mark", &XML_opt_data[i+1])) { /* array terminatfmn */ - int pre_len = i - last_mark; + size_t pre_len = i - last_mark; int field_num; char *right_end = strchr(&XML_opt_data[i+9], '>'); char *prestring = malloc(pre_len + 1); @@ -501,7 +494,7 @@ build_XML_output_info(FMFormat format) } } if (info_count != 0) { - int post_len = XML_data_len - last_mark; + size_t post_len = XML_data_len - last_mark; char *poststring = malloc(post_len + 1); strncpy(poststring, &XML_opt_data[last_mark], post_len); poststring[post_len] = 0; @@ -525,7 +518,7 @@ build_XML_output_info(FMFormat format) static int get_int_attr(int *int_ptr, char *name, char *start, char *end) { - int name_len = strlen(name); + int name_len = (int)strlen(name); start -= 1; while(++start < (end - name_len)) { if (*start == *name) { @@ -552,7 +545,7 @@ get_int_attr(int *int_ptr, char *name, char *start, char *end) static int get_str_attr(char **str_ptr, char *name, char *start, char *end) { - int name_len = strlen(name); + int name_len = (int)strlen(name); start -= 1; while(++start < (end - name_len)) { if (*start == *name) { @@ -608,14 +601,8 @@ FMhas_XML_info(FMFormat format) } extern void -dump_FMfield_as_XML(c, format, field, data, string_base, encode, verbose) -FMContext c; -FMFormat format; -int field; -void *data; -void *string_base; -int encode; -int verbose; +dump_FMfield_as_XML(FMContext c, FMFormat format, int field, void *data, + void *string_base, int encode, int verbose) { ffs_dstring ds = new_dstring(); generic_field_to_XML(format, field, data, string_base, encode, @@ -626,18 +613,9 @@ int verbose; } extern int -add_single_value_as_XML(field_type, field_size, field_offset, - data, string_base, byte_reversal, float_format, - encode, ds) -const char *field_type; -int field_size; -int field_offset; -void *data; -void *string_base; -int byte_reversal; -int float_format; -int encode; -ffs_dstring ds; +add_single_value_as_XML(const char *field_type, int field_size, int field_offset, void *data, + void *string_base, int byte_reversal, int float_format, int encode, + ffs_dstring ds) { FMgetFieldStruct descr; /* OK */ char str[64]; @@ -651,72 +629,72 @@ ffs_dstring ds; str[0] = 0; if (descr.data_type == integer_type) { if (field_size <= sizeof(long)) { - long tmp = get_FMlong(&descr, data); - sprintf(str, "%ld", tmp); + size_t tmp = get_FMlong(&descr, data); + snprintf(str, sizeof(str), "%zd", tmp); } else if (field_size == 2 * sizeof(long) && field_size == 8) { unsigned long low_long; long high_long; get_FMlong8(&descr, data, &low_long, &high_long); if (high_long == 0) { - sprintf(str, "%ld ", low_long); + snprintf(str, sizeof(str), "%ld ", low_long); } else { - sprintf(str, "0x%lx%08lx ", high_long, low_long); + snprintf(str, sizeof(str), "0x%lx%08lx ", high_long, low_long); } } else if (field_size > sizeof(long)) { - sprintf(str, ""); + snprintf(str, sizeof(str), ""); } else { - sprintf(str, "", field_size); + snprintf(str, sizeof(str), "", field_size); } } else if (descr.data_type == unsigned_type) { if (field_size <= sizeof(unsigned long)) { - unsigned long tmp = get_FMulong(&descr, data); - sprintf(str, "%lu ", tmp); + size_t tmp = get_FMulong(&descr, data); + snprintf(str, sizeof(str), "%zu ", tmp); } else if (field_size == 2 * sizeof(long) && field_size == 8) { unsigned long low_long, high_long; get_FMulong8(&descr, data, &low_long, &high_long); if (high_long == 0) { - sprintf(str, "%lu ", low_long); + snprintf(str, sizeof(str), "%lu ", low_long); } else { - sprintf(str, "0x%lx%08lx ", high_long, low_long); + snprintf(str, sizeof(str), "0x%lx%08lx ", high_long, low_long); } } else if (field_size > sizeof(long)) { - sprintf(str, ""); + snprintf(str, sizeof(str), ""); } else { - sprintf(str, "", field_size); + snprintf(str, sizeof(str), "", field_size); } } else if (descr.data_type == enumeration_type) { - sprintf(str, "%u ", *(int *) ((char *) data + field_offset)); + snprintf(str, sizeof(str), "%u ", *(int *) ((char *) data + field_offset)); } else if (descr.data_type == boolean_type) { if (*(int *) ((char *) data + field_offset) == 0) { - strcpy(str, "false "); + strncpy(str, "false ", sizeof(str)); } else { - strcpy(str, "true "); + strncpy(str, "true ", sizeof(str)); } } else if (descr.data_type == float_type) { if (field_size == sizeof(float)) { float tmp = get_FMfloat(&descr, data); - sprintf(str, "%g ", tmp); + snprintf(str, sizeof(str), "%g ", tmp); } else if (field_size == sizeof(double)) { double tmp = get_FMdouble(&descr, data); - sprintf(str, "%g ", tmp); + snprintf(str, sizeof(str), "%g ", tmp); #if SIZEOF_LONG_DOUBLE != 0 && SIZEOF_LONG_DOUBLE != SIZEOF_DOUBLE } else if (field_size == sizeof(long double)) { long double tmp; memcpy(&tmp, (float *) ((char *) data + field_offset), sizeof(double)); - sprintf(str, "%Lg ", tmp); + snprintf(str, sizeof(str), "%Lg ", tmp); #endif } else { if (field_size < sizeof(float)) { - sprintf(str, ""); + snprintf(str, sizeof(str), ""); } else if (field_size > sizeof(double)) { - sprintf(str, ""); + snprintf(str, sizeof(str), ""); } else { - sprintf(str, "", field_size); + snprintf(str, sizeof(str), "", field_size); } } } else if (descr.data_type == char_type) { - sprintf(str, "%c ", *(char *) ((char *) data + field_offset)); + snprintf(str, sizeof(str), "%c ", *(char *) ((char *) data + field_offset)); } else if (descr.data_type == string_type) { char *tmp_str = (char *) get_FMaddr(&descr, data, string_base, encode); if (tmp_str != 0) { @@ -731,21 +709,9 @@ ffs_dstring ds; } static void -add_value_as_XML(field_type, field_size, field_offset, format, field, data, - string_base, byte_reversal, float_format, encode, - in_array, ds) -const char *field_type; -int field_size; -int field_offset; -FMFormat format; -int field; -void *data; -void *string_base; -int byte_reversal; -int float_format; -int encode; -int in_array; -ffs_dstring ds; +add_value_as_XML(const char *field_type, int field_size, int field_offset, FMFormat format, int field, + void *data, void *string_base, int byte_reversal, int float_format, int encode, + int in_array, ffs_dstring ds) { if (add_single_value_as_XML(field_type, field_size, field_offset, data, string_base, byte_reversal, @@ -780,13 +746,8 @@ ffs_dstring ds; } static void -generic_field_to_XML(format, field, data, string_base, encode, ds) -FMFormat format; -int field; -void *data; -void *string_base; -int encode; -ffs_dstring ds; +generic_field_to_XML(FMFormat format, int field, void *data, void *string_base, + int encode, ffs_dstring ds) { FMFieldList fmfield = &format->field_list[field]; FMVarInfoList iovar = &format->var_list[field]; @@ -814,7 +775,7 @@ ffs_dstring ds; int offset = fmfield->field_offset; dcatstr(ds, "\n"); *left_paren = 0; - strcpy(sub_type, field_type); + strncpy(sub_type, field_type, sizeof(sub_type)); *left_paren = '['; dimension = strtol(left_paren + 1, NULL, 10); @@ -826,7 +787,7 @@ ffs_dstring ds; return; } else { FMgetFieldStruct descr; /* OK */ - long tmp_offset; + size_t tmp_offset; dimension = FMget_array_element_count(format, iovar, data, encode); @@ -862,7 +823,7 @@ ffs_dstring ds; int sub_field_size, offset = fmfield->field_offset; dcatstr(ds, "\n"); *left_paren = 0; - strcpy(sub_type, field_type); + strncpy(sub_type, field_type, sizeof(sub_type)); dimension1 = strtol(left_paren + 1, &temp_ptr, 10); dimension2 = strtol(temp_ptr + 2, &temp_ptr, 10); diff --git a/version.c b/version.c index 085efd2ad8..8d7e3ee75f 100755 --- a/version.c +++ b/version.c @@ -1,6 +1,6 @@ #include -static char *FFS_version = "FFS Version 1.4.0 - Sun Dec 24 07:57:49 EST 2017\n"; +static char *FFS_version = "FFS Version 3.0.0 - Sun May 14 17:04:30 EDT 2023\n"; void FFSprint_version() From 20afb0eebfb40c571a36808333276114e97cf61c Mon Sep 17 00:00:00 2001 From: dill Upstream Date: Fri, 9 Jun 2023 14:20:14 -0400 Subject: [PATCH 019/183] dill 2023-06-09 (6c94efb3) Code extracted from: https://github.com/GTkorvo/dill.git at commit 6c94efb329e239d654b69d6640c47c0b9bb778c5 (master). Upstream Shortlog ----------------- --- CMakeLists.txt | 4 +- base.ops | 8 +- dill_cplus.c | 42 +- dill_internal.h | 291 +- dill_pkg.c | 110 +- dill_util.c | 1594 +++++----- tests/CMakeLists.txt | 9 +- tests/call-gen | 2 +- tests/stest.c | 4 + tests/test-gen | 12 +- virtual.c | 6691 +++++++++++++++++++++-------------------- virtual.h | 59 +- virtual.ops | 45 +- vm.c | 1039 +++---- vtests/basic_call.c | 2 +- vtests/general.ops | 36 +- vtests/opt.c | 8 +- vtests/t1.c | 4 +- x86_64.c | 3859 +++++++++++++----------- x86_64.h | 551 ++-- x86_64_disassembler.c | 1482 ++++----- x86_64_rt.c | 73 +- 22 files changed, 8419 insertions(+), 7506 deletions(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index 59673d03de..bd86a32d99 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -3,7 +3,7 @@ cmake_minimum_required(VERSION 3.0) # The directory label is used for CDash to treat DILL as a subproject of GTKorvo set(CMAKE_DIRECTORY_LABELS DILL) -project(DILL VERSION 2.4.1 LANGUAGES C CXX) +project(DILL VERSION 3.0.0 LANGUAGES C CXX) # Some boilerplate to setup nice output directories include(GNUInstallDirs) @@ -38,7 +38,7 @@ endif() if(NOT DEFINED DILL_HEADER_COMPONENT) set(DILL_HEADER_COMPONENT dev) endif() - +add_definitions(-DDILL_SRC) if(WIN32) # Automagic to do the DLL / LIB song and dance set(CMAKE_WINDOWS_EXPORT_ALL_SYMBOLS TRUE) diff --git a/base.ops b/base.ops index a31e033429..cd7e3bf3c0 100755 --- a/base.ops +++ b/base.ops @@ -64,7 +64,11 @@ print HOUT "#define dill_jpi(s, dest_imm) (s->j->jpi)(s, dest_imm)\n"; print HOUT "#define dill_jalp(s, return_addr_reg, target) (s->j->jal)(s, return_addr_reg, target)\n"; print HOUT "#define dill_special(s, type, param) if (s->j->special) (s->j->special)(s, type, param)\n"; - +print HOUT "#if defined(_MSC_VER) && !defined(DILL_SRC)\n"; +print HOUT "#define DILL_DECLSPEC __declspec(dllimport)\n"; +print HOUT "#else\n"; +print HOUT "#define DILL_DECLSPEC\n"; +print HOUT "#endif\n"; print COUT "\n/* This file is generated from base.ops. Do not edit directly. */\n\n"; print COUT "#include \"dill.h\"\n"; print COUT "\nchar *arith3_name[] = \{".substr($enum_a3,2). "\};\n"; @@ -72,7 +76,7 @@ print COUT "\nchar *arith2_name[] = \{".substr($enum_a2,2). "\};\n"; foreach $key (sort keys %poly_array) { $poly_array{$key} .= " "; print COUT "int dill_${key}_poly_map[] = {\n"; - print HOUT "extern int dill_${key}_poly_map[];\n"; + print HOUT "extern DILL_DECLSPEC int dill_${key}_poly_map[];\n"; print HOUT "#define dill_P$key(s, typ, dest, src1, src2) (s->j->jmp_a3)[dill_${key}_poly_map[typ]](s, s->j->a3_data[dill_${key}_poly_map[typ]].data1, s->j->a3_data[dill_${key}_poly_map[typ]].data2, dest, src1, src2)\n"; foreach (split(' ', "c uc s us i u l ul p f d v b")) { $typ = $_; diff --git a/dill_cplus.c b/dill_cplus.c index 8ae7ae59d8..ef893c03cb 100644 --- a/dill_cplus.c +++ b/dill_cplus.c @@ -1,43 +1,43 @@ -#include "config.h" #include +#include "config.h" typedef struct mp { union { - void *call_ptr; - long vtindex; + void* call_ptr; + long vtindex; } u; - int delta; /* offset from base, used with multiple inheritance */ - int vflag; /* used on archs where call_ptr might be legitmately odd */ -} *method_pointer; + int delta; /* offset from base, used with multiple inheritance */ + int vflag; /* used on archs where call_ptr might be legitmately odd */ +} * method_pointer; -extern -void *get_this_ptr( method_pointer m, void *object_ptr) +extern void* +get_this_ptr(method_pointer m, void* object_ptr) { - void *th; - th = ((char *)object_ptr) + (m->delta / 2); + void* th; + th = ((char*)object_ptr) + (m->delta / 2); return th; } -extern -void *get_xfer_ptr( method_pointer m, void *object_ptr) +extern void* +get_xfer_ptr(method_pointer m, void* object_ptr) { - void *cptr; + void* cptr; cptr = m->u.call_ptr; #if defined(NOTDEF) - if (m->vflag != 0) { /* vflag indicates virtual on some archs*/ + if (m->vflag != 0) { /* vflag indicates virtual on some archs*/ #elif defined(HOST_ARM6) || defined(HOST_ARM7) - if ((m->delta & 0x1) == 1) { /* odd delta indicates virtual on some archs*/ + if ((m->delta & 0x1) == 1) { /* odd delta indicates virtual on some archs*/ #else - if ((m->u.vtindex & 0x1) == 1) { /* METHOD_PTR IS ODD - virtual */ + if ((m->u.vtindex & 0x1) == 1) { /* METHOD_PTR IS ODD - virtual */ #endif - int vtableindex = m->u.vtindex & -4; - void **vtable = *((void***)object_ptr); + int vtableindex = m->u.vtindex & -4; + void** vtable = *((void***)object_ptr); - vtable = (void **)(((char*)vtable) + vtableindex); + vtable = (void**)(((char*)vtable) + vtableindex); #ifdef HOST_IA64 - cptr = vtable; + cptr = vtable; #else - cptr = *vtable; + cptr = *vtable; #endif } return cptr; diff --git a/dill_internal.h b/dill_internal.h index effb408911..ed5670f7fb 100644 --- a/dill_internal.h +++ b/dill_internal.h @@ -1,18 +1,32 @@ -extern void extend_dill_stream(dill_stream s); -extern void dump_cur_dill_insn(dill_stream s); -extern jmp_table alloc_dill_jump_table(void); +#define malloc(size) dill_malloc(size) +#define realloc(ptr, size) dill_realloc(ptr, size) + +#include +#include + +extern void* +dill_malloc(size_t size); +extern void* +dill_realloc(void* ptr, size_t size); + +extern void +extend_dill_stream(dill_stream s); +extern void +dump_cur_dill_insn(dill_stream s); +extern jmp_table +alloc_dill_jump_table(void); #define INIT_CODE_SIZE 64 -typedef struct arg_info { +typedef struct arg_info { char type; - char is_register; /* true if parameter is in register */ - char is_immediate; /* true if actual is an immediate */ - int in_reg; /* callee register it's in */ - int out_reg; /* caller register it's in */ - int offset; /* otherwise at this offset from v_pp */ + char is_register; /* true if parameter is in register */ + char is_immediate; /* true if actual is an immediate */ + int in_reg; /* callee register it's in */ + int out_reg; /* caller register it's in */ + int offset; /* otherwise at this offset from v_pp */ int used; -} *arg_info_list; +} * arg_info_list; typedef struct reg_set { long init_avail[1]; @@ -28,42 +42,41 @@ struct branch_location { }; struct data_mark { - void **addr; + void** addr; int label; }; struct branch_table { int next_label; int max_alloc; - int *label_locs; - char **label_name; + int* label_locs; + char** label_name; int branch_count; int branch_alloc; - struct branch_location *branch_locs; + struct branch_location* branch_locs; int data_segment_size; - char *data_segment; + char* data_segment; }; -typedef struct branch_table *branch_t; - +typedef struct branch_table* branch_t; struct call_location { int loc; - void *xfer_addr; - const char *xfer_name; - void *mach_info; + void* xfer_addr; + const char* xfer_name; + void* mach_info; }; typedef struct call_table { int call_alloc; int call_count; - struct call_location *call_locs; + struct call_location* call_locs; } call_t; typedef struct ret_table { int ret_alloc; int ret_count; - int *ret_locs; + int* ret_locs; } ret_t; typedef void (*mach_reset_func)(dill_stream s); @@ -74,8 +87,8 @@ typedef struct vreg_info { int offset; int need_assign; struct { - short use_count; - short def_count; + short use_count; + short def_count; } use_info; int assign_loc; @@ -93,17 +106,17 @@ typedef struct preg_info { typedef struct saved { jmp_table mach_jump; mach_reset_func mach_reset; - void *mach_info; - char *code_base; - char *cur_ip; - char *code_limit; + void* mach_info; + char* code_base; + char* cur_ip; + char* code_limit; } saved_insn_info; struct dill_private_ctx { - char *code_base; - char *cur_ip; - char *code_limit; - void *fp; + char* code_base; + char* cur_ip; + char* code_limit; + void* fp; int ret_type; struct branch_table branch_table; struct call_table call_table; @@ -112,7 +125,7 @@ struct dill_private_ctx { mach_reset_func native_mach_reset; saved_insn_info native; saved_insn_info virtual; - void *mach_info; + void* mach_info; int machine_strr_tmp_reg; reg_set var_i; reg_set tmp_i; @@ -120,96 +133,96 @@ struct dill_private_ctx { reg_set tmp_f; int c_param_count; int save_param_count; - dill_reg **c_param_regs; + dill_reg** c_param_regs; arg_info_list c_param_args; - dill_parameter_type **c_param_structs; + dill_parameter_type** c_param_structs; int doing_reverse_push; int unavail_called; int vreg_count; - vreg_info *vregs; + vreg_info* vregs; int v_tmps[DILL_B][3]; int used_frame; /* below used for libffi emulation */ - void*emu_args; - void*cifp; - void*closure; + void* emu_args; + void* cifp; + void* closure; }; struct reg_type { union { - struct { + struct { #ifdef WORDS_BIGENDIAN #if SIZEOF_LONG == 4 - char junk1, junk2, junk3; + char junk1, junk2, junk3; #else - char junk1, junk2, junk3, junk4, junk5, junk6, junk7; + char junk1, junk2, junk3, junk4, junk5, junk6, junk7; #endif #endif - signed char c; - } c; - struct { + signed char c; + } c; + struct { #ifdef WORDS_BIGENDIAN #if SIZEOF_LONG == 4 - char junk1, junk2, junk3; + char junk1, junk2, junk3; #else - char junk1, junk2, junk3, junk4, junk5, junk6, junk7; + char junk1, junk2, junk3, junk4, junk5, junk6, junk7; #endif #endif - unsigned char uc; - } uc; - struct { + unsigned char uc; + } uc; + struct { #ifdef WORDS_BIGENDIAN #if SIZEOF_LONG == 4 - char junk1, junk2; + char junk1, junk2; #else - char junk1, junk2, junk3, junk4, junk5, junk6; + char junk1, junk2, junk3, junk4, junk5, junk6; #endif #endif - short s; - } s; - struct { + short s; + } s; + struct { #ifdef WORDS_BIGENDIAN #if SIZEOF_LONG == 4 - char junk1, junk2; + char junk1, junk2; #else - char junk1, junk2, junk3, junk4, junk5, junk6; + char junk1, junk2, junk3, junk4, junk5, junk6; #endif #endif - unsigned short us; - } us; - struct { + unsigned short us; + } us; + struct { #ifdef WORDS_BIGENDIAN #if SIZEOF_LONG == 8 - char junk1, junk2, junk3, junk4; + char junk1, junk2, junk3, junk4; #endif #endif - int i; - } i; - struct { + int i; + } i; + struct { #ifdef WORDS_BIGENDIAN #if SIZEOF_LONG == 8 - char junk1, junk2, junk3, junk4; + char junk1, junk2, junk3, junk4; #endif #endif - unsigned int u; - } u; - struct { - long l; - } l; - struct { - unsigned long ul; - } ul; - struct { - void * p; - } p; - struct { - float f; - } f; - struct { - double d; - } d; + unsigned int u; + } u; + struct { + intptr_t l; + } l; + struct { + uintptr_t ul; + } ul; + struct { + void* p; + } p; + struct { + float f; + } f; + struct { + double d; + } d; } u; }; @@ -220,30 +233,39 @@ struct calling_param { struct client_data_struct { int key; - long value; + intptr_t value; }; struct dec { dill_stream dc; int ret_reg; int param_count; - struct reg_type *r; - struct reg_type *p; + struct reg_type* r; + struct reg_type* p; int out_param_count; - struct calling_param *out_params; + struct calling_param* out_params; int client_data_count; - struct client_data_struct *client_data; + struct client_data_struct* client_data; }; -extern int dill_mustsave(reg_set *regs, int reg); -extern int dill_wasused(reg_set *regs, int reg); -extern void dill_mark_branch_location(dill_stream s, int label); -extern void dill_mark_call_location(dill_stream s, const char *xfer_name, - void *xfer_address); -extern void dill_mark_ret_location(dill_stream s); -extern void dill_end_vararg_push(dill_stream s); -extern void dill_dump_reg(dill_stream s, int typ, int reg); -extern void setup_VM_proc(dill_stream s); +extern int +dill_mustsave(reg_set* regs, int reg); +extern int +dill_wasused(reg_set* regs, int reg); +extern void +dill_mark_branch_location(dill_stream s, int label); +extern void +dill_mark_call_location(dill_stream s, + const char* xfer_name, + void* xfer_address); +extern void +dill_mark_ret_location(dill_stream s); +extern void +dill_end_vararg_push(dill_stream s); +extern void +dill_dump_reg(dill_stream s, int typ, int reg); +extern void +setup_VM_proc(dill_stream s); typedef struct dill_pkg_1 { unsigned short magic; @@ -253,55 +275,56 @@ typedef struct dill_pkg_1 { short symbol_count; int code_size; short code_offset; -} *dill_pkg; +} * dill_pkg; typedef struct xfer_rec { /*! the textual name of the external entry */ - const char *xfer_name; + const char* xfer_name; /*! the address of the external entry */ - void *xfer_addr; + void* xfer_addr; } xfer_entry; -extern void dill_lookup_xfer_addrs(call_t *t, xfer_entry *x); +extern void +dill_lookup_xfer_addrs(call_t* t, xfer_entry* x); struct dill_exec_s { int ref_count; - void *code_base; + void* code_base; int size; void (*fp)(); /* below used for libffi emulation */ - void*emu_args; - void*cifp; - void*closure; + void* emu_args; + void* cifp; + void* closure; }; -#define DECLARE_JUMP_TABLE(NAME) \ -struct jmp_table_s NAME ## _table_s;\ -arith_op3 NAME ## _a3[dill_jmp_a3_size+1];\ -jmp_data NAME ## _a3_data[dill_jmp_a3_size+1];\ -arith_op3i NAME ## _a3i[dill_jmp_a3_size+1];\ -jmp_data NAME ## _a3i_data[dill_jmp_a3_size+1];\ -arith_op2 NAME ## _a2[dill_jmp_a2_size+1];\ -jmp_data NAME ## _a2_data[dill_jmp_a2_size+1];\ -branch_op NAME ## _b[dill_jmp_branch_size+1];\ -branch_opi NAME ## _bi[dill_jmp_branch_size+1];\ -jmp_data NAME ## _b_data[dill_jmp_branch_size+1];\ -compare_op NAME ## _c[dill_jmp_compare_size+1];\ -compare_opi NAME ## _ci[dill_jmp_compare_size+1];\ -jmp_data NAME ## _c_data[dill_jmp_compare_size+1];\ -\ -jmp_table NAME ## _jump_table = & NAME ## _table_s; - -#define FILL_JUMP_STRUCTURE(NAME)\ - NAME ## _jump_table->jmp_a3 = &NAME ## _a3[0];\ - NAME ## _jump_table->a3_data = &NAME ## _a3_data[0];\ - NAME ## _jump_table->jmp_a3i = &NAME ## _a3i[0];\ - NAME ## _jump_table->a3i_data = &NAME ## _a3i_data[0];\ - NAME ## _jump_table->jmp_a2 = &NAME ## _a2[0];\ - NAME ## _jump_table->a2_data = &NAME ## _a2_data[0];\ - NAME ## _jump_table->jmp_b = &NAME ## _b[0];\ - NAME ## _jump_table->jmp_bi = &NAME ## _bi[0];\ - NAME ## _jump_table->b_data = &NAME ## _b_data[0];\ - NAME ## _jump_table->jmp_c = &NAME ## _c[0];\ - NAME ## _jump_table->jmp_ci = &NAME ## _ci[0];\ - NAME ## _jump_table->c_data = &NAME ## _c_data[0]; +#define DECLARE_JUMP_TABLE(NAME) \ + struct jmp_table_s NAME##_table_s; \ + arith_op3 NAME##_a3[dill_jmp_a3_size + 1]; \ + jmp_data NAME##_a3_data[dill_jmp_a3_size + 1]; \ + arith_op3i NAME##_a3i[dill_jmp_a3_size + 1]; \ + jmp_data NAME##_a3i_data[dill_jmp_a3_size + 1]; \ + arith_op2 NAME##_a2[dill_jmp_a2_size + 1]; \ + jmp_data NAME##_a2_data[dill_jmp_a2_size + 1]; \ + branch_op NAME##_b[dill_jmp_branch_size + 1]; \ + branch_opi NAME##_bi[dill_jmp_branch_size + 1]; \ + jmp_data NAME##_b_data[dill_jmp_branch_size + 1]; \ + compare_op NAME##_c[dill_jmp_compare_size + 1]; \ + compare_opi NAME##_ci[dill_jmp_compare_size + 1]; \ + jmp_data NAME##_c_data[dill_jmp_compare_size + 1]; \ + \ + jmp_table NAME##_jump_table = &NAME##_table_s; + +#define FILL_JUMP_STRUCTURE(NAME) \ + NAME##_jump_table->jmp_a3 = &NAME##_a3[0]; \ + NAME##_jump_table->a3_data = &NAME##_a3_data[0]; \ + NAME##_jump_table->jmp_a3i = &NAME##_a3i[0]; \ + NAME##_jump_table->a3i_data = &NAME##_a3i_data[0]; \ + NAME##_jump_table->jmp_a2 = &NAME##_a2[0]; \ + NAME##_jump_table->a2_data = &NAME##_a2_data[0]; \ + NAME##_jump_table->jmp_b = &NAME##_b[0]; \ + NAME##_jump_table->jmp_bi = &NAME##_bi[0]; \ + NAME##_jump_table->b_data = &NAME##_b_data[0]; \ + NAME##_jump_table->jmp_c = &NAME##_c[0]; \ + NAME##_jump_table->jmp_ci = &NAME##_ci[0]; \ + NAME##_jump_table->c_data = &NAME##_c_data[0]; diff --git a/dill_pkg.c b/dill_pkg.c index 63bffa0010..38faa32897 100644 --- a/dill_pkg.c +++ b/dill_pkg.c @@ -1,9 +1,5 @@ #include "config.h" -#ifdef HAVE_MALLOC_H -#include -#endif - #ifdef STDC_HEADERS #include #include @@ -14,27 +10,29 @@ #include "dill_internal.h" static void -unpack_package(char *package, call_t *t, char **code_p) +unpack_package(char* package, call_t* t, char** code_p) { int count; int pkg_size = sizeof(struct dill_pkg_1); - char *p; - struct dill_pkg_1 *pkg = (struct dill_pkg_1 *) package; + char* p; + struct dill_pkg_1* pkg = (struct dill_pkg_1*)package; - pkg_size = (pkg_size + 7) & -8; /* round up to mod 8 */ + pkg_size = (pkg_size + 7) & -8; /* round up to mod 8 */ p = package + pkg_size; - if (pkg->magic != 0xbeef) printf("Not valid package\n"); - if (pkg->pkg_version != 1) printf("Not valid package version\n"); + if (pkg->magic != 0xbeef) + printf("Not valid package\n"); + if (pkg->pkg_version != 1) + printf("Not valid package version\n"); t->call_alloc = t->call_count = pkg->symbol_count; t->call_locs = malloc(sizeof(t->call_locs[0]) * pkg->symbol_count); memset(t->call_locs, 0, sizeof(t->call_locs[0]) * pkg->symbol_count); - for (count = 0; countsymbol_count; count++) { - size_t call_len; - t->call_locs[count].loc = *((int*)p); - t->call_locs[count].xfer_name = (p + sizeof(int)); - call_len = sizeof(int) + strlen(t->call_locs[count].xfer_name) + 1; - call_len = (call_len + 7) & (size_t)-8; /* round up to mod 8 */ - p += call_len; + for (count = 0; count < pkg->symbol_count; count++) { + size_t call_len; + t->call_locs[count].loc = *((int*)p); + t->call_locs[count].xfer_name = (p + sizeof(int)); + call_len = sizeof(int) + strlen(t->call_locs[count].xfer_name) + 1; + call_len = (call_len + 7) & (size_t)-8; /* round up to mod 8 */ + p += call_len; } *code_p = p; } @@ -42,72 +40,80 @@ unpack_package(char *package, call_t *t, char **code_p) extern void* dill_package_entry(char* package) { - struct dill_pkg_1 *pkg = (struct dill_pkg_1 *) package; + struct dill_pkg_1* pkg = (struct dill_pkg_1*)package; return package + pkg->code_offset + pkg->entry_offset; } -extern char * sparc_package_stitch(char *code, call_t *t, dill_pkg pkg); -extern char * x86_package_stitch(char *code, call_t *t, dill_pkg pkg); -extern char * x86_64_package_stitch(char *code, call_t *t, dill_pkg pkg); -extern char * arm5_package_stitch(char *code, call_t *t, dill_pkg pkg); -extern char * arm6_package_stitch(char *code, call_t *t, dill_pkg pkg); -extern char * arm8_package_stitch(char *code, call_t *t, dill_pkg pkg); -extern char * ia64_package_stitch(char *code, call_t *t, dill_pkg pkg); -extern char * powerpc_package_stitch(char *code, call_t *t, dill_pkg pkg); -extern char * ppc64le_package_stitch(char *code, call_t *t, dill_pkg pkg); +extern char* +sparc_package_stitch(char* code, call_t* t, dill_pkg pkg); +extern char* +x86_package_stitch(char* code, call_t* t, dill_pkg pkg); +extern char* +x86_64_package_stitch(char* code, call_t* t, dill_pkg pkg); +extern char* +arm5_package_stitch(char* code, call_t* t, dill_pkg pkg); +extern char* +arm6_package_stitch(char* code, call_t* t, dill_pkg pkg); +extern char* +arm8_package_stitch(char* code, call_t* t, dill_pkg pkg); +extern char* +ia64_package_stitch(char* code, call_t* t, dill_pkg pkg); +extern char* +powerpc_package_stitch(char* code, call_t* t, dill_pkg pkg); +extern char* +ppc64le_package_stitch(char* code, call_t* t, dill_pkg pkg); extern void -dill_lookup_xfer_addrs(call_t *t, xfer_entry *x) +dill_lookup_xfer_addrs(call_t* t, xfer_entry* x) { int i; for (i = 0; i < t->call_count; i++) { - xfer_entry *e = x; - while(e->xfer_name != NULL) { - if (strcmp(e->xfer_name, t->call_locs[i].xfer_name) == 0) { - t->call_locs[i].xfer_addr = e->xfer_addr; - } - e++; - } + xfer_entry* e = x; + while (e->xfer_name != NULL) { + if (strcmp(e->xfer_name, t->call_locs[i].xfer_name) == 0) { + t->call_locs[i].xfer_addr = e->xfer_addr; + } + e++; + } } } extern dill_exec_handle -dill_package_stitch(char *pkg, dill_extern_entry* extra_externs) +dill_package_stitch(char* pkg, dill_extern_entry* extra_externs) { dill_exec_handle handle = malloc(sizeof(*handle)); - char *code; + char* code; call_t t; unpack_package(pkg, &t, &code); if (extra_externs) { - dill_lookup_xfer_addrs(&t, (xfer_entry *)extra_externs); + dill_lookup_xfer_addrs(&t, (xfer_entry*)extra_externs); } #if defined(HOST_X86) && !defined(DILL_IGNORE_NATIVE) - char *p = x86_package_stitch(code, &t, (dill_pkg) pkg); + char* p = x86_package_stitch(code, &t, (dill_pkg)pkg); #elif defined(HOST_SPARC) && !defined(DILL_IGNORE_NATIVE) - char *p = sparc_package_stitch(code, &t, (dill_pkg) pkg); + char* p = sparc_package_stitch(code, &t, (dill_pkg)pkg); #elif defined(HOST_SPARCV9) && !defined(DILL_IGNORE_NATIVE) - char *p = sparc_package_stitch(code, &t, (dill_pkg) pkg); + char* p = sparc_package_stitch(code, &t, (dill_pkg)pkg); #elif defined(HOST_X86_64) && !defined(DILL_IGNORE_NATIVE) - char *p = x86_64_package_stitch(code, &t, (dill_pkg) pkg); + char* p = x86_64_package_stitch(code, &t, (dill_pkg)pkg); #elif defined(HOST_IA64) && !defined(DILL_IGNORE_NATIVE) - char *p = ia64_package_stitch(code, &t, (dill_pkg) pkg); + char* p = ia64_package_stitch(code, &t, (dill_pkg)pkg); #elif defined(HOST_ARM5) && !defined(DILL_IGNORE_NATIVE) - char *p = arm5_package_stitch(code, &t, (dill_pkg) pkg); + char* p = arm5_package_stitch(code, &t, (dill_pkg)pkg); #elif defined(HOST_ARM6) && !defined(DILL_IGNORE_NATIVE) - char *p = arm6_package_stitch(code, &t, (dill_pkg) pkg); + char* p = arm6_package_stitch(code, &t, (dill_pkg)pkg); #elif defined(HOST_ARM7) && !defined(DILL_IGNORE_NATIVE) - char *p = arm6_package_stitch(code, &t, (dill_pkg) pkg); + char* p = arm6_package_stitch(code, &t, (dill_pkg)pkg); #elif defined(HOST_ARM8) && !defined(DILL_IGNORE_NATIVE) - char *p = arm8_package_stitch(code, &t, (dill_pkg) pkg); + char* p = arm8_package_stitch(code, &t, (dill_pkg)pkg); #elif defined(HOST_POWERPC) && !defined(DILL_IGNORE_NATIVE) - char *p = powerpc_package_stitch(code, &t, (dill_pkg) pkg); + char* p = powerpc_package_stitch(code, &t, (dill_pkg)pkg); #elif defined(HOST_PPC64LE) && !defined(DILL_IGNORE_NATIVE) - char *p = ppc64le_package_stitch(code, &t, (dill_pkg) pkg); + char* p = ppc64le_package_stitch(code, &t, (dill_pkg)pkg); #else - char *p = NULL; + char* p = NULL; #endif free(t.call_locs); - handle->fp = (void(*)()) p; + handle->fp = (void (*)())p; return handle; } - diff --git a/dill_util.c b/dill_util.c index 27cee8a62e..083fc31543 100644 --- a/dill_util.c +++ b/dill_util.c @@ -3,59 +3,41 @@ #ifndef NATIVE_ARCH #define NATIVE_ARCH "UNKNOWN" #endif -#ifdef LINUX_KERNEL_MODULE -#ifndef MODULE -#define MODULE -#endif -#ifndef __KERNEL__ -#define __KERNEL__ -#endif -#include -#include -#endif #include "dill.h" -#include "dill_internal.h" -#ifndef LINUX_KERNEL_MODULE #include #include #ifdef HAVE_MALLOC_H #include #endif -#include #include -#ifdef HAVE_UNISTD_H +#include +#ifdef _MSC_VER +#include +typedef SSIZE_T ssize_t; +#else #include #endif -#include #include +#include #ifdef USE_MMAP_CODE_SEG #include #endif -#else -#include -#include -#include "kdill.h" - -#define malloc (void *)DAllocMM -#define free(a) DFreeMM((addrs_t)a) -#define realloc(a,b) (void *)DReallocMM((addrs_t)a, b) -#define fprintf(fmt, args...) printk(args) -#define printf printk -#define exit sys_exit -#undef USE_MMAP_CODE_SEG -extern char *getenv(const char *name); -#endif +#include "dill_internal.h" -static char *DILL_version = "DILL Version "DILL_VERSION"\n"; +static char* DILL_version = "DILL Version " DILL_VERSION "\n"; -void DILLprint_version(){ - printf("%s",DILL_version); +void +DILLprint_version() +{ + printf("%s", DILL_version); } -extern void init_code_block(dill_stream s); -static void free_code_blocks(dill_stream s); +extern void +init_code_block(dill_stream s); +static void +free_code_blocks(dill_stream s); #define END_OF_CODE_BUFFER 60 @@ -79,13 +61,13 @@ dill_register_init(dill_stream s) static void dill_branch_init(dill_stream s) { - struct branch_table *t = &s->p->branch_table; + struct branch_table* t = &s->p->branch_table; int i; t->next_label = 0; - for (i=0; imax_alloc; i++) { - t->label_locs[i] = -1; - t->label_name[i] = NULL; + for (i = 0; i < t->max_alloc; i++) { + t->label_locs[i] = -1; + t->label_name[i] = NULL; } t->branch_count = 0; t->data_segment_size = 0; @@ -94,7 +76,7 @@ dill_branch_init(dill_stream s) static void dill_call_init(dill_stream s) { - struct call_table *t = &s->p->call_table; + struct call_table* t = &s->p->call_table; t->call_count = 0; } @@ -102,13 +84,14 @@ dill_call_init(dill_stream s) static void dill_ret_init(dill_stream s) { - struct ret_table *t = &s->p->ret_table; + struct ret_table* t = &s->p->ret_table; t->ret_count = 0; } #ifdef BUILD_EMULATOR #include "ffi.h" -void free_emulator_handler_bits(dill_exec_handle handle); +void +free_emulator_handler_bits(dill_exec_handle handle); #endif static void @@ -120,28 +103,42 @@ reset_context(dill_stream s) dill_branch_init(s); dill_call_init(s); dill_ret_init(s); - if (s->p->emu_args) free(s->p->emu_args); - if (s->p->cifp) free(s->p->cifp); + if (s->p->emu_args) + free(s->p->emu_args); + if (s->p->cifp) + free(s->p->cifp); #ifdef BUILD_EMULATOR - if (s->p->closure) ffi_closure_free(s->p->closure); + if (s->p->closure) + ffi_closure_free(s->p->closure); #endif s->p->emu_args = NULL; s->p->cifp = NULL; s->p->closure = NULL; } -extern void dill_sparc_init(dill_stream s); -extern void dill_sparcv9_init(dill_stream s); -extern void dill_x86_init(dill_stream s); -extern void dill_x86_64_init(dill_stream s); -extern void dill_arm5_init(dill_stream s); -extern void dill_arm6_init(dill_stream s); -extern void dill_arm7_init(dill_stream s); -extern void dill_arm8_init(dill_stream s); -extern void dill_ppc64le_init(dill_stream s); -extern void dill_ia64_init(dill_stream s); +extern void +dill_sparc_init(dill_stream s); +extern void +dill_sparcv9_init(dill_stream s); +extern void +dill_x86_init(dill_stream s); +extern void +dill_x86_64_init(dill_stream s); +extern void +dill_arm5_init(dill_stream s); +extern void +dill_arm6_init(dill_stream s); +extern void +dill_arm7_init(dill_stream s); +extern void +dill_arm8_init(dill_stream s); +extern void +dill_ppc64le_init(dill_stream s); +extern void +dill_ia64_init(dill_stream s); #if defined(EMULATION_ONLY) -static void null_init(dill_stream s) +static void +null_init(dill_stream s) { extern int virtual_type_align[]; extern int virtual_type_size[]; @@ -153,63 +150,71 @@ static void null_init(dill_stream s) #endif static int -set_mach_reset(dill_stream s, char *arch) +set_mach_reset(dill_stream s, char* arch) { -#if (defined(MULTI_TARGET) || defined(HOST_SPARC) || defined(HOST_SPARCV9)) && !defined(DILL_IGNORE_NATIVE) +#if (defined(MULTI_TARGET) || defined(HOST_SPARC) || defined(HOST_SPARCV9)) && \ + !defined(DILL_IGNORE_NATIVE) if (strcmp(arch, "sparc") == 0) { - s->p->mach_reset = dill_sparc_init; - return 1; + s->p->mach_reset = dill_sparc_init; + return 1; } else if (strcmp(arch, "sparcv9") == 0) { - s->p->mach_reset = dill_sparcv9_init; - return 1; - } else + s->p->mach_reset = dill_sparcv9_init; + return 1; + } else #endif -#if (defined(MULTI_TARGET) || defined(HOST_X86)) && !defined(DILL_IGNORE_NATIVE) - if (strcmp(arch, "x86") == 0) { - s->p->mach_reset = dill_x86_init; - return 1; - } else +#if (defined(MULTI_TARGET) || defined(HOST_X86)) && !defined(DILL_IGNORE_NATIVE) + if (strcmp(arch, "x86") == 0) { + s->p->mach_reset = dill_x86_init; + return 1; + } else #endif -#if (defined(MULTI_TARGET) || defined(HOST_X86_64)) && !defined(DILL_IGNORE_NATIVE) - if (strcmp(arch, "x86_64") == 0) { - s->p->mach_reset = dill_x86_64_init; - return 1; - } else +#if (defined(MULTI_TARGET) || defined(HOST_X86_64)) && \ + !defined(DILL_IGNORE_NATIVE) + if (strcmp(arch, "x86_64") == 0) { + s->p->mach_reset = dill_x86_64_init; + return 1; + } else #endif -#if (defined(MULTI_TARGET) || defined(HOST_IA64)) && !defined(DILL_IGNORE_NATIVE) - if (strcmp(arch, "ia64") == 0) { - s->p->mach_reset = dill_ia64_init; - return 1; - } else +#if (defined(MULTI_TARGET) || defined(HOST_IA64)) && \ + !defined(DILL_IGNORE_NATIVE) + if (strcmp(arch, "ia64") == 0) { + s->p->mach_reset = dill_ia64_init; + return 1; + } else #endif -#if (defined(MULTI_TARGET) || defined(HOST_ARM5)) && !defined(DILL_IGNORE_NATIVE) - if (strcmp(arch, "arm5") == 0) { - s->p->mach_reset = dill_arm5_init; - return 1; +#if (defined(MULTI_TARGET) || defined(HOST_ARM5)) && \ + !defined(DILL_IGNORE_NATIVE) + if (strcmp(arch, "arm5") == 0) { + s->p->mach_reset = dill_arm5_init; + return 1; } #endif -#if (defined(MULTI_TARGET) || defined(HOST_ARM6)|| defined(HOST_ARM7)) && !defined(DILL_IGNORE_NATIVE) +#if (defined(MULTI_TARGET) || defined(HOST_ARM6) || defined(HOST_ARM7)) && \ + !defined(DILL_IGNORE_NATIVE) if (strcmp(arch, "arm6") == 0) { - s->p->mach_reset = dill_arm6_init; - return 1; + s->p->mach_reset = dill_arm6_init; + return 1; } #endif -#if (defined(MULTI_TARGET) || defined(HOST_ARM7)) && !defined(DILL_IGNORE_NATIVE) +#if (defined(MULTI_TARGET) || defined(HOST_ARM7)) && \ + !defined(DILL_IGNORE_NATIVE) if (strcmp(arch, "arm7") == 0) { - s->p->mach_reset = dill_arm6_init; - return 1; + s->p->mach_reset = dill_arm6_init; + return 1; } #endif -#if (defined(MULTI_TARGET) || defined(HOST_ARM8)) && !defined(DILL_IGNORE_NATIVE) +#if (defined(MULTI_TARGET) || defined(HOST_ARM8)) && \ + !defined(DILL_IGNORE_NATIVE) if (strcmp(arch, "arm8") == 0) { - s->p->mach_reset = dill_arm8_init; - return 1; + s->p->mach_reset = dill_arm8_init; + return 1; } #endif -#if (defined(MULTI_TARGET) || defined(HOST_PPC64LE)) && !defined(DILL_IGNORE_NATIVE) +#if (defined(MULTI_TARGET) || defined(HOST_PPC64LE)) && \ + !defined(DILL_IGNORE_NATIVE) if (strcmp(arch, "ppc64le") == 0) { - s->p->mach_reset = dill_ppc64le_init; - return 1; + s->p->mach_reset = dill_ppc64le_init; + return 1; } #endif #if defined(EMULATION_ONLY) || defined(DILL_IGNORE_NATIVE) @@ -222,16 +227,20 @@ set_mach_reset(dill_stream s, char *arch) extern void dill_free_stream(dill_stream s) { - if (s->p->branch_table.label_locs) free(s->p->branch_table.label_locs); + if (s->p->branch_table.label_locs) + free(s->p->branch_table.label_locs); if (s->p->branch_table.label_name) { - int i=0; - for (i=0; i< s->p->branch_table.max_alloc; i++) { - if (s->p->branch_table.label_name[i]) free(s->p->branch_table.label_name[i]); - } - free(s->p->branch_table.label_name); + int i = 0; + for (i = 0; i < s->p->branch_table.max_alloc; i++) { + if (s->p->branch_table.label_name[i]) + free(s->p->branch_table.label_name[i]); + } + free(s->p->branch_table.label_name); } - if (s->p->branch_table.branch_locs) free(s->p->branch_table.branch_locs); - if (s->p->branch_table.data_segment) free(s->p->branch_table.data_segment); + if (s->p->branch_table.branch_locs) + free(s->p->branch_table.branch_locs); + if (s->p->branch_table.data_segment) + free(s->p->branch_table.data_segment); free(s->p->call_table.call_locs); free(s->p->ret_table.ret_locs); free(s->p->c_param_regs); @@ -239,47 +248,55 @@ dill_free_stream(dill_stream s) free(s->p->c_param_structs); free_code_blocks(s); if (s->p->mach_info) { - if ((s->p->mach_info != s->p->virtual.mach_info) && - (s->p->mach_info != s->p->native.mach_info)) free(s->p->mach_info); + if ((s->p->mach_info != s->p->virtual.mach_info) && + (s->p->mach_info != s->p->native.mach_info)) + free(s->p->mach_info); } - if (s->p->vregs) free(s->p->vregs); - if (s->p->virtual.mach_info) free(s->p->virtual.mach_info); - if (s->p->native.mach_info) free(s->p->native.mach_info); - if (s->p->emu_args) free(s->p->emu_args); - if (s->p->cifp) free(s->p->cifp); + if (s->p->vregs) + free(s->p->vregs); + if (s->p->virtual.mach_info) + free(s->p->virtual.mach_info); + if (s->p->native.mach_info) + free(s->p->native.mach_info); + if (s->p->emu_args) + free(s->p->emu_args); + if (s->p->cifp) + free(s->p->cifp); #ifdef BUILD_EMULATOR - if (s->p->closure) ffi_closure_free(s->p->closure); + if (s->p->closure) + ffi_closure_free(s->p->closure); #endif free(s->p); s->p = NULL; free(s); } -extern void DILLprint_version(); +extern void +DILLprint_version(); extern dill_stream -dill_cross_init(char *arch) +dill_cross_init(char* arch) { - dill_stream s = (dill_stream) malloc(sizeof(struct dill_stream_s)); - char *env = getenv("DILL_DEBUG"); - struct branch_table *bt; - struct call_table *ct; - struct ret_table *rt; + dill_stream s = (dill_stream)malloc(sizeof(struct dill_stream_s)); + char* env = getenv("DILL_DEBUG"); + struct branch_table* bt; + struct call_table* ct; + struct ret_table* rt; memset(s, 0, sizeof(struct dill_stream_s)); - s->p = (private_ctx) malloc(sizeof(struct dill_private_ctx)); + s->p = (private_ctx)malloc(sizeof(struct dill_private_ctx)); memset(s->p, 0, sizeof(struct dill_private_ctx)); if (env == NULL) { - s->dill_debug = 0; + s->dill_debug = 0; } else { - s->dill_debug = 1; - DILLprint_version(); + s->dill_debug = 1; + DILLprint_version(); } s->p->mach_info = NULL; if (!set_mach_reset(s, arch)) { - fprintf(stderr, "DILL support for architecture %s not found.\n", arch); - free(s->p); - free(s); - return NULL; + fprintf(stderr, "DILL support for architecture %s not found.\n", arch); + free(s->p); + free(s); + return NULL; } init_code_block(s); s->p->cur_ip = s->p->code_base; @@ -322,9 +339,8 @@ dill_cross_init(char *arch) return s; } -extern void dill_virtual_init(dill_stream s); - - +extern void +dill_virtual_init(dill_stream s); extern dill_stream dill_create_stream() @@ -348,11 +364,12 @@ dill_create_stream() s->p->virtual.code_limit = s->p->code_limit; return s; } - #ifndef EMULATION_ONLY extern void -dill_native_dcg(){} +dill_native_dcg() +{ +} #endif extern dill_stream @@ -366,26 +383,30 @@ extend_params(dill_stream s, int argno) { int i; if (s->p->c_param_count == 0) { - s->p->c_param_regs = malloc(sizeof(s->p->c_param_regs[0]) * (argno + 2)); - s->p->c_param_args = malloc(sizeof(s->p->c_param_args[0]) * (argno + 2)); - s->p->c_param_structs = malloc(sizeof(s->p->c_param_structs[0]) * (argno + 2)); + s->p->c_param_regs = + malloc(sizeof(s->p->c_param_regs[0]) * (argno + 2)); + s->p->c_param_args = + malloc(sizeof(s->p->c_param_args[0]) * (argno + 2)); + s->p->c_param_structs = + malloc(sizeof(s->p->c_param_structs[0]) * (argno + 2)); } else if (s->p->c_param_count <= (argno + 1)) { - s->p->c_param_regs = realloc(s->p->c_param_regs, - sizeof(s->p->c_param_regs[0]) * (argno + 2)); - s->p->c_param_args = realloc(s->p->c_param_args, - sizeof(s->p->c_param_args[0]) * (argno + 2)); - s->p->c_param_structs = realloc(s->p->c_param_structs, - sizeof(s->p->c_param_structs[0]) * (argno + 2)); + s->p->c_param_regs = realloc( + s->p->c_param_regs, sizeof(s->p->c_param_regs[0]) * (argno + 2)); + s->p->c_param_args = realloc( + s->p->c_param_args, sizeof(s->p->c_param_args[0]) * (argno + 2)); + s->p->c_param_structs = + realloc(s->p->c_param_structs, + sizeof(s->p->c_param_structs[0]) * (argno + 2)); } for (i = s->p->c_param_count; i <= argno; i++) { - s->p->c_param_regs[i] = NULL; - s->p->c_param_args[i].type = DILL_V; - s->p->c_param_args[i].is_register = 0; - s->p->c_param_args[i].is_immediate = 0; - s->p->c_param_args[i].in_reg = 0; - s->p->c_param_args[i].out_reg = 0; - s->p->c_param_args[i].offset = 0; - s->p->c_param_structs[i] = NULL; + s->p->c_param_regs[i] = NULL; + s->p->c_param_args[i].type = DILL_V; + s->p->c_param_args[i].is_register = 0; + s->p->c_param_args[i].is_immediate = 0; + s->p->c_param_args[i].in_reg = 0; + s->p->c_param_args[i].out_reg = 0; + s->p->c_param_args[i].offset = 0; + s->p->c_param_structs[i] = NULL; } s->p->c_param_count = (argno + 1); } @@ -400,15 +421,15 @@ extern int dill_param_reg(dill_stream s, int argno) { if (argno >= s->p->c_param_count) { - printf("Warning, dill_param_reg requested param %d, largest is %d\n", - argno, s->p->c_param_count-1); - return -1; + printf("Warning, dill_param_reg requested param %d, largest is %d\n", + argno, s->p->c_param_count - 1); + return -1; } return s->p->c_param_args[argno].in_reg; } extern void -dill_param_alloc(dill_stream s, int argno, int type, dill_reg *reg_p) +dill_param_alloc(dill_stream s, int argno, int type, dill_reg* reg_p) { extend_params(s, argno); s->p->c_param_regs[argno] = reg_p; @@ -416,8 +437,10 @@ dill_param_alloc(dill_stream s, int argno, int type, dill_reg *reg_p) } extern void -dill_param_struct_alloc(dill_stream s, int argno, int type, - dill_parameter_type *struct_p) +dill_param_struct_alloc(dill_stream s, + int argno, + int type, + dill_parameter_type* struct_p) { extend_params(s, argno); s->p->c_param_structs[argno] = struct_p; @@ -425,47 +448,47 @@ dill_param_struct_alloc(dill_stream s, int argno, int type, } extern void -dill_start_simple_proc(dill_stream s, const char *subr_name, int ret_type) +dill_start_simple_proc(dill_stream s, const char* subr_name, int ret_type) { int i; - if (!s->p->unavail_called) reset_context(s); + if (!s->p->unavail_called) + reset_context(s); s->p->ret_type = ret_type; s->p->unavail_called = 0; - (s->j->proc_start)(s, (char*)subr_name, s->p->c_param_count, s->p->c_param_args, - NULL); - for (i=0; i < s->p->c_param_count; i++) { - if (s->p->c_param_regs[i] != NULL) { - *s->p->c_param_regs[i] = s->p->c_param_args[i].in_reg; - } - if (s->p->c_param_structs[i] != NULL) { - s->p->c_param_structs[i]->is_register = - s->p->c_param_args[i].is_register; - s->p->c_param_structs[i]->reg = s->p->c_param_args[i].in_reg; - s->p->c_param_structs[i]->offset = s->p->c_param_args[i].offset; - } - } + (s->j->proc_start)(s, (char*)subr_name, s->p->c_param_count, + s->p->c_param_args, NULL); + for (i = 0; i < s->p->c_param_count; i++) { + if (s->p->c_param_regs[i] != NULL) { + *s->p->c_param_regs[i] = s->p->c_param_args[i].in_reg; + } + if (s->p->c_param_structs[i] != NULL) { + s->p->c_param_structs[i]->is_register = + s->p->c_param_args[i].is_register; + s->p->c_param_structs[i]->reg = s->p->c_param_args[i].in_reg; + s->p->c_param_structs[i]->offset = s->p->c_param_args[i].offset; + } + } s->p->c_param_count = 0; if (s->p->c_param_regs) { - free(s->p->c_param_regs); - s->p->c_param_regs = NULL; + free(s->p->c_param_regs); + s->p->c_param_regs = NULL; } if (s->p->c_param_args) { - free(s->p->c_param_args); - s->p->c_param_args = NULL; + free(s->p->c_param_args); + s->p->c_param_args = NULL; } if (s->p->c_param_structs) { - free(s->p->c_param_structs); - s->p->c_param_structs = NULL; + free(s->p->c_param_structs); + s->p->c_param_structs = NULL; } } -extern void * +extern void* dill_get_fp(dill_exec_handle h) { - return (void *) h->fp; + return (void*)h->fp; } - extern dill_exec_handle dill_finalize(dill_stream s) { @@ -474,7 +497,7 @@ dill_finalize(dill_stream s) s->p->save_param_count = s->p->c_param_count; s->p->c_param_count = 0; memset(handle, 0, sizeof(*handle)); - handle->fp = (void(*)())s->p->fp; + handle->fp = (void (*)())s->p->fp; handle->ref_count = 1; handle->size = 0; return handle; @@ -485,16 +508,18 @@ dill_get_handle(dill_stream s) { char* native_base = s->p->native.code_base; dill_exec_handle handle = malloc(sizeof(*handle)); - intptr_t size = (intptr_t)s->p->native.code_limit - (intptr_t)s->p->native.code_base + END_OF_CODE_BUFFER; + intptr_t size = (intptr_t)s->p->native.code_limit - + (intptr_t)s->p->native.code_base + END_OF_CODE_BUFFER; s->p->native.code_base = NULL; if (native_base == 0) { native_base = s->p->code_base; - size = (intptr_t)s->p->code_limit - (intptr_t)s->p->code_base + END_OF_CODE_BUFFER; - s->p->code_base = NULL; + size = (intptr_t)s->p->code_limit - (intptr_t)s->p->code_base + + END_OF_CODE_BUFFER; + s->p->code_base = NULL; } - handle->fp = (void(*)())s->p->fp; + handle->fp = (void (*)())s->p->fp; handle->ref_count = 1; - handle->size = size; + handle->size = (int)size; handle->code_base = native_base; /* below used for libffi emulation */ handle->emu_args = s->p->emu_args; @@ -510,15 +535,17 @@ extern void dill_free_handle(dill_exec_handle handle) { handle->ref_count--; - if (handle->ref_count > 0) return; + if (handle->ref_count > 0) + return; if (handle->size != 0) { - if (handle->code_base) { + if (handle->code_base) { #ifdef USE_MMAP_CODE_SEG - if (munmap(handle->code_base, handle->size) == -1) perror("unmap 1"); + if (munmap(handle->code_base, handle->size) == -1) + perror("unmap 1"); #else - free(handle->code_base); + free(handle->code_base); #endif - } + } } handle->code_base = NULL; handle->size = 0; @@ -534,49 +561,51 @@ dill_ref_handle(dill_exec_handle handle) handle->ref_count++; } -static char * -dill_build_package(dill_stream s, int *pkg_len) +static char* +dill_build_package(dill_stream s, int* pkg_len) { - struct call_table *t = &s->p->call_table; + struct call_table* t = &s->p->call_table; int pkg_size = sizeof(struct dill_pkg_1); - char *pkg; + char* pkg; int i; - pkg_size = (pkg_size + 7) & -8; /* round up to mod 8 */ + pkg_size = (pkg_size + 7) & -8; /* round up to mod 8 */ pkg = malloc(pkg_size); memset(pkg, 0, pkg_size); - ((struct dill_pkg_1 *)pkg)->magic = 0xbeef; - ((struct dill_pkg_1 *)pkg)->pkg_version = 1; - ((struct dill_pkg_1 *)pkg)->symbol_count = t->call_count; + ((struct dill_pkg_1*)pkg)->magic = 0xbeef; + ((struct dill_pkg_1*)pkg)->pkg_version = 1; + ((struct dill_pkg_1*)pkg)->symbol_count = t->call_count; for (i = 0; i < t->call_count; i++) { - int call_len = sizeof(int) + strlen(t->call_locs[i].xfer_name) + 1; - char *call_loc; - - call_len = (call_len + 7) & -8; /* round up to mod 8 */ - pkg = realloc(pkg, pkg_size + call_len); - call_loc = pkg + pkg_size; - pkg_size += call_len; - *((int*)call_loc) = t->call_locs[i].loc; - *((int*)(call_loc + call_len - 4)) = 0; /* zero last bit */ - strcpy(call_loc + 4, t->call_locs[i].xfer_name); + int call_len = + (int)(sizeof(int) + strlen(t->call_locs[i].xfer_name) + 1); + char* call_loc; + + call_len = (call_len + 7) & -8; /* round up to mod 8 */ + pkg = realloc(pkg, pkg_size + call_len); + call_loc = pkg + pkg_size; + pkg_size += call_len; + *((int*)call_loc) = t->call_locs[i].loc; + *((int*)(call_loc + call_len - 4)) = 0; /* zero last bit */ + strcpy(call_loc + 4, t->call_locs[i].xfer_name); } pkg = realloc(pkg, pkg_size + dill_code_size(s)); - ((struct dill_pkg_1 *)pkg)->code_size = dill_code_size(s); - ((struct dill_pkg_1 *)pkg)->code_offset = pkg_size; + ((struct dill_pkg_1*)pkg)->code_size = dill_code_size(s); + ((struct dill_pkg_1*)pkg)->code_offset = pkg_size; memcpy(pkg + pkg_size, s->p->code_base, dill_code_size(s)); pkg_size += dill_code_size(s); *pkg_len = pkg_size; - ((struct dill_pkg_1 *)pkg)->entry_offset = (short)( (char*)s->p->fp - (char*)s->p->code_base); + ((struct dill_pkg_1*)pkg)->entry_offset = + (short)((char*)s->p->fp - (char*)s->p->code_base); return pkg; } -extern char * -dill_finalize_package(dill_stream s, int *pkg_len) +extern char* +dill_finalize_package(dill_stream s, int* pkg_len) { (s->j->package_end)(s); s->p->save_param_count = s->p->c_param_count; s->p->c_param_count = 0; - char *p = dill_build_package(s, pkg_len); + char* p = dill_build_package(s, pkg_len); return p; } @@ -587,103 +616,112 @@ dill_code_size(dill_stream s) if (native_base == 0) { native_base = s->p->code_base; } - return (int) ((char*)s->p->cur_ip - native_base); + return (int)((char*)s->p->cur_ip - native_base); } -extern void * -dill_clone_code(dill_stream s, void *new_base, int size) +extern void* +dill_clone_code(dill_stream s, void* new_base, int size) { return (s->j->clone_code)(s, new_base, size); } -extern void * +extern void* dill_take_code(dill_stream s) { - void *ret = s->p->code_base; + void* ret = s->p->code_base; s->p->code_base = NULL; s->p->native.code_base = NULL; return ret; } extern int -dill_alloc_label(dill_stream s, char *name) +dill_alloc_label(dill_stream s, char* name) { - struct branch_table *t = &s->p->branch_table; + struct branch_table* t = &s->p->branch_table; if (t->next_label == t->max_alloc) { - t->max_alloc++; - t->label_locs = realloc(t->label_locs, sizeof(int)*t->max_alloc); - t->label_name = realloc(t->label_name, sizeof(char*)*t->max_alloc); + t->max_alloc++; + t->label_locs = realloc(t->label_locs, sizeof(int) * t->max_alloc); + t->label_name = realloc(t->label_name, sizeof(char*) * t->max_alloc); } t->label_locs[t->next_label] = -1; t->label_name[t->next_label] = NULL; - if (name) t->label_name[t->next_label] = strdup(name); + if (name) + t->label_name[t->next_label] = strdup(name); return t->next_label++; } -extern void dill_mark_label(dill_stream s, int label) +extern void +dill_mark_label(dill_stream s, int label) { - struct branch_table *t = &s->p->branch_table; - int label_loc = (int) ((char*)s->p->cur_ip - (char*)s->p->code_base); + struct branch_table* t = &s->p->branch_table; + int label_loc = (int)((char*)s->p->cur_ip - (char*)s->p->code_base); t->label_locs[label] = label_loc; - if (s->j->mark_label) (s->j->mark_label)(s, 0, 0, 0, 0, label); + if (s->j->mark_label) + (s->j->mark_label)(s, 0, 0, 0, 0, label); if (s->dill_debug) { - if (t->label_name[label] == NULL) { - printf("L%d:\n", label); - } else { - printf("L%d<%s>:\n", label, t->label_name[label]); - } + if (t->label_name[label] == NULL) { + printf("L%d:\n", label); + } else { + printf("L%d<%s>:\n", label, t->label_name[label]); + } } } -extern int dill_is_label_mark(dill_stream s) +extern int +dill_is_label_mark(dill_stream s) { - struct branch_table *t = &s->p->branch_table; + struct branch_table* t = &s->p->branch_table; int i; - int current_loc = (int) ((char*)s->p->cur_ip - (char*)s->p->code_base); + int current_loc = (int)((char*)s->p->cur_ip - (char*)s->p->code_base); for (i = 0; i < t->max_alloc; i++) { - if (t->label_locs[0] == current_loc) return 1; + if (t->label_locs[0] == current_loc) + return 1; } return 0; } -extern void dill_mark_branch_location(dill_stream s, int label) +extern void +dill_mark_branch_location(dill_stream s, int label) { - struct branch_table *t = &s->p->branch_table; + struct branch_table* t = &s->p->branch_table; int branch_loc = (int)((char*)s->p->cur_ip - (char*)s->p->code_base); if (t->branch_count == t->branch_alloc) { - t->branch_alloc++; - t->branch_locs = realloc(t->branch_locs, - sizeof(struct branch_location)*t->branch_alloc); + t->branch_alloc++; + t->branch_locs = realloc( + t->branch_locs, sizeof(struct branch_location) * t->branch_alloc); } t->branch_locs[t->branch_count].label = label; t->branch_locs[t->branch_count].loc = branch_loc; t->branch_count++; } -extern void dill_mark_ret_location(dill_stream s) +extern void +dill_mark_ret_location(dill_stream s) { - struct ret_table *t = &s->p->ret_table; - int ret_loc = (int) ((char*)s->p->cur_ip - (char*)s->p->code_base); + struct ret_table* t = &s->p->ret_table; + int ret_loc = (int)((char*)s->p->cur_ip - (char*)s->p->code_base); if (t->ret_count == t->ret_alloc) { - t->ret_alloc++; - t->ret_locs = realloc(t->ret_locs, sizeof(int)*t->ret_alloc); + t->ret_alloc++; + t->ret_locs = realloc(t->ret_locs, sizeof(int) * t->ret_alloc); } t->ret_locs[t->ret_count] = ret_loc; t->ret_count++; } -extern void dill_mark_call_location(dill_stream s, const char *xfer_name, - void *xfer_address) +extern void +dill_mark_call_location(dill_stream s, + const char* xfer_name, + void* xfer_address) { - struct call_table *t = &s->p->call_table; - int call_loc = (int) ((char*)s->p->cur_ip - (char*)s->p->code_base); + struct call_table* t = &s->p->call_table; + int call_loc = (int)((char*)s->p->cur_ip - (char*)s->p->code_base); if (t->call_count == t->call_alloc) { - t->call_alloc++; - t->call_locs = realloc(t->call_locs, - sizeof(struct call_location)*t->call_alloc); + t->call_alloc++; + t->call_locs = + realloc(t->call_locs, sizeof(struct call_location) * t->call_alloc); } t->call_locs[t->call_count].loc = call_loc; t->call_locs[t->call_count].xfer_addr = xfer_address; @@ -693,92 +731,134 @@ extern void dill_mark_call_location(dill_stream s, const char *xfer_name, } extern int -dill_add_const(dill_stream s, void *addr, int size) +dill_add_const(dill_stream s, void* addr, int size) { - struct branch_table *t = &s->p->branch_table; + struct branch_table* t = &s->p->branch_table; int offset = t->data_segment_size; - t->data_segment = realloc(t->data_segment, offset + size); + t->data_segment = realloc(t->data_segment, offset + size); memcpy(t->data_segment + offset, addr, size); t->data_segment_size += size; return offset; } -static -arg_info_list -translate_arg_str(const char *string, int *count) +static arg_info_list +translate_arg_str(const char* string, int* count) { int cnt = 0; arg_info_list list = malloc(sizeof(list[0])); - + while (string && (*string != 0)) { - if (*string != '%') { - fprintf(stderr, "invalid format, expected %%, got \"%c\"\n", - *string); - return NULL; - } - string++; - list[cnt].is_register = 0; - list[cnt].is_immediate = (isupper((int)(*string)) != 0); - list[cnt].in_reg = 0; - list[cnt].out_reg = 0; - list[cnt].offset = 0; - list[cnt].type = 0; - switch(tolower(*string)) { + if (*string != '%') { + fprintf(stderr, "invalid format, expected %%, got \"%c\"\n", + *string); + return NULL; + } + string++; + list[cnt].is_register = 0; + list[cnt].is_immediate = (isupper((int)(*string)) != 0); + list[cnt].in_reg = 0; + list[cnt].out_reg = 0; + list[cnt].offset = 0; + list[cnt].type = 0; + switch (tolower(*string)) { case 'u': - string++; - switch(tolower(*string)) { - case 'l': list[cnt].type = DILL_UL; string++; break; - case 's': list[cnt].type = DILL_US; string++; break; - case 'c': list[cnt].type = DILL_UC; string++; break; - case '%': case '\0': - list[cnt].type = DILL_U; break; - default: - fprintf(stderr, "invalid format, unexpect char \"%c\" after %%u\n", *string); - } - break; - case 'p': list[cnt].type = DILL_P; string++; break; - case 'l': list[cnt].type = DILL_L; string++; break; - case 'i': list[cnt].type = DILL_I; string++; break; - case 's': list[cnt].type = DILL_S; string++; break; - case 'c': list[cnt].type = DILL_C; string++; break; - case 'b': list[cnt].type = DILL_B; string++; break; - case 'f': list[cnt].type = DILL_F; string++; break; - case 'd': list[cnt].type = DILL_D; string++; break; - case 'e': - string++; - if (tolower(*string) == 'c') { - if (cnt == 0) { - list[cnt].type = DILL_EC; string++; break; - } else { - fprintf(stderr, "%%ec format must be first format\n"); - } - } else { - fprintf(stderr, "invalid format, unexpect char \"%c\" after %%e\n", *string); - } - string++; - break; + string++; + switch (tolower(*string)) { + case 'l': + list[cnt].type = DILL_UL; + string++; + break; + case 's': + list[cnt].type = DILL_US; + string++; + break; + case 'c': + list[cnt].type = DILL_UC; + string++; + break; + case '%': + case '\0': + list[cnt].type = DILL_U; + break; + default: + fprintf(stderr, + "invalid format, unexpect char \"%c\" after %%u\n", + *string); + } + break; + case 'p': + list[cnt].type = DILL_P; + string++; + break; + case 'l': + list[cnt].type = DILL_L; + string++; + break; + case 'i': + list[cnt].type = DILL_I; + string++; + break; + case 's': + list[cnt].type = DILL_S; + string++; + break; + case 'c': + list[cnt].type = DILL_C; + string++; + break; + case 'b': + list[cnt].type = DILL_B; + string++; + break; + case 'f': + list[cnt].type = DILL_F; + string++; + break; + case 'd': + list[cnt].type = DILL_D; + string++; + break; + case 'e': + string++; + if (tolower(*string) == 'c') { + if (cnt == 0) { + list[cnt].type = DILL_EC; + string++; + break; + } else { + fprintf(stderr, "%%ec format must be first format\n"); + } + } else { + fprintf(stderr, + "invalid format, unexpect char \"%c\" after %%e\n", + *string); + } + string++; + break; default: - fprintf(stderr, "invalid format, unexpect char \"%c\" after %%\n", *string); - string++; - } - cnt++; - list = realloc(list, sizeof(list[0]) * (cnt+1)); + fprintf(stderr, "invalid format, unexpect char \"%c\" after %%\n", + *string); + string++; + } + cnt++; + list = realloc(list, sizeof(list[0]) * (cnt + 1)); } *count = cnt; return list; } extern void -dill_start_proc(dill_stream s, char *name, int ret_type, char *arg_str) +dill_start_proc(dill_stream s, char* name, int ret_type, char* arg_str) { int arg_count = 0; arg_info_list args; - if (!s->p->unavail_called) reset_context(s); + if (!s->p->unavail_called) + reset_context(s); s->p->c_param_count = 0; s->p->ret_type = ret_type; if (s->p->c_param_args != NULL) { - free (s->p->c_param_args); - s->p->c_param_args = NULL; + free(s->p->c_param_args); + s->p->c_param_args = NULL; } args = s->p->c_param_args = translate_arg_str(arg_str, &arg_count); s->p->c_param_count = arg_count; @@ -795,13 +875,15 @@ init_code_block(dill_stream s) #endif static long ps = -1; if (ps == -1) { - ps = (getpagesize ()); + ps = (getpagesize()); } - if (ps > size) size = ps; - s->p->code_base = (void*)mmap(0, 4096/*INIT_CODE_SIZE*/, - PROT_EXEC | PROT_READ | PROT_WRITE, - MAP_ANONYMOUS|MAP_PRIVATE, -1, 0); - if (s->p->code_base == (void*)-1) perror("mmap"); + if (ps > size) + size = ps; + s->p->code_base = (void*)mmap(0, 4096 /*INIT_CODE_SIZE*/, + PROT_EXEC | PROT_READ | PROT_WRITE, + MAP_ANONYMOUS | MAP_PRIVATE, -1, 0); + if (s->p->code_base == (void*)-1) + perror("mmap"); #else s->p->code_base = (void*)malloc(size); #endif @@ -813,42 +895,52 @@ free_code_blocks(dill_stream s) { #ifdef USE_MMAP_CODE_SEG if (s->p->code_base) { - int size = (long)s->p->code_limit - (long)s->p->code_base + END_OF_CODE_BUFFER; - if (munmap(s->p->code_base, size) == -1) perror("unmap 1"); + int size = + (long)s->p->code_limit - (long)s->p->code_base + END_OF_CODE_BUFFER; + if (munmap(s->p->code_base, size) == -1) + perror("unmap 1"); } - if (s->p->virtual.code_base && (s->p->virtual.code_base != s->p->code_base) ) { - int vsize = (long)s->p->virtual.code_limit - (long)s->p->virtual.code_base + END_OF_CODE_BUFFER; - if (munmap(s->p->code_base, vsize) == -1) perror("unmap v"); + if (s->p->virtual.code_base && + (s->p->virtual.code_base != s->p->code_base)) { + int vsize = (long)s->p->virtual.code_limit - + (long)s->p->virtual.code_base + END_OF_CODE_BUFFER; + if (munmap(s->p->code_base, vsize) == -1) + perror("unmap v"); } - if (s->p->native.code_base && (s->p->native.code_base != s->p->code_base) ) { - int nsize = (long)s->p->native.code_limit - (long)s->p->native.code_base + END_OF_CODE_BUFFER; - if (munmap(s->p->code_base, nsize) == -1) perror("unmap n"); + if (s->p->native.code_base && (s->p->native.code_base != s->p->code_base)) { + int nsize = (long)s->p->native.code_limit - + (long)s->p->native.code_base + END_OF_CODE_BUFFER; + if (munmap(s->p->code_base, nsize) == -1) + perror("unmap n"); } #else - if (s->p->code_base) free(s->p->code_base); - if (s->p->virtual.code_base && (s->p->virtual.code_base != s->p->code_base) ) - free(s->p->virtual.code_base); - if (s->p->native.code_base && (s->p->native.code_base != s->p->code_base) ) - free(s->p->native.code_base); + if (s->p->code_base) + free(s->p->code_base); + if (s->p->virtual.code_base && (s->p->virtual.code_base != s->p->code_base)) + free(s->p->virtual.code_base); + if (s->p->native.code_base && (s->p->native.code_base != s->p->code_base)) + free(s->p->native.code_base); #endif } extern void extend_dill_stream(dill_stream s) { - int size = (int)((char*)s->p->code_limit - (char*)s->p->code_base + END_OF_CODE_BUFFER); + int size = (int)((char*)s->p->code_limit - (char*)s->p->code_base + + END_OF_CODE_BUFFER); int cur_ip = (int)((char*)s->p->cur_ip - (char*)s->p->code_base); int new_size = size * 2; #ifdef USE_MMAP_CODE_SEG { - void *old = s->p->code_base; - void *new = mmap(0, new_size, - PROT_EXEC | PROT_READ | PROT_WRITE, - MAP_ANONYMOUS|MAP_PRIVATE, -1, 0); - if (new == (void*)-1) perror("mmap1"); - memcpy(new, old, size); - s->p->code_base = new; - if (munmap(old, size) == -1) perror("munmap exp"); + void* old = s->p->code_base; + void* new = mmap(0, new_size, PROT_EXEC | PROT_READ | PROT_WRITE, + MAP_ANONYMOUS | MAP_PRIVATE, -1, 0); + if (new == (void*)-1) + perror("mmap1"); + memcpy(new, old, size); + s->p->code_base = new; + if (munmap(old, size) == -1) + perror("munmap exp"); } #else s->p->code_base = realloc(s->p->code_base, new_size); @@ -857,53 +949,58 @@ extend_dill_stream(dill_stream s) s->p->code_limit = ((char*)s->p->code_base) + new_size - END_OF_CODE_BUFFER; } -extern jmp_table alloc_dill_jump_table() +extern jmp_table +alloc_dill_jump_table() { - fprintf(stderr, "Don't use alloc_dill_jump_table(). Rewrite to use DECLARE_JUMP_TABLE() and FILL_JUMP_STRUCTURE()\n"); + fprintf(stderr, + "Don't use alloc_dill_jump_table(). Rewrite to use " + "DECLARE_JUMP_TABLE() and FILL_JUMP_STRUCTURE()\n"); return NULL; } -#define BIT_ON(i, bitvec) (((((long)1)<p->var_f.used); - SET_BIT(reg, s->p->tmp_f.used); - break; + SET_BIT(reg, s->p->tmp_f.used); + break; default: SET_BIT(reg, s->p->var_i.used); - SET_BIT(reg, s->p->tmp_i.used); - break; + SET_BIT(reg, s->p->tmp_i.used); + break; } } -int -dill_mustsave(reg_set *regs, int reg) +int +dill_mustsave(reg_set* regs, int reg) { return BIT_ON(reg, regs->mustsave); } -int -dill_wasused(reg_set *regs, int reg) +int +dill_wasused(reg_set* regs, int reg) { return BIT_ON(reg, regs->used); } static int -reg_alloc(reg_set *regs) +reg_alloc(reg_set* regs) { int reg; if (regs->avail[0] == 0) { - return -1; + return -1; } reg = 0; while (!BIT_ON(reg, regs->avail)) { - reg++; + reg++; } RESET_BIT(reg, regs->avail); return reg; @@ -912,46 +1009,48 @@ reg_alloc(reg_set *regs) extern void dill_alloc_specific(dill_stream s, dill_reg reg, int type, int class) { - switch(type) { - case DILL_D: case DILL_F: - if (class == DILL_VAR) { - SET_BIT(reg, s->p->var_f.avail); - RESET_BIT(reg, s->p->var_f.mustsave); - } else { - SET_BIT(reg, s->p->tmp_f.avail); - } - break; + switch (type) { + case DILL_D: + case DILL_F: + if (class == DILL_VAR) { + SET_BIT(reg, s->p->var_f.avail); + RESET_BIT(reg, s->p->var_f.mustsave); + } else { + SET_BIT(reg, s->p->tmp_f.avail); + } + break; default: - if (class == DILL_VAR) { - SET_BIT(reg, s->p->var_i.avail); - RESET_BIT(reg, s->p->var_i.mustsave); - } else { - SET_BIT(reg, s->p->tmp_i.avail); - } - break; + if (class == DILL_VAR) { + SET_BIT(reg, s->p->var_i.avail); + RESET_BIT(reg, s->p->var_i.mustsave); + } else { + SET_BIT(reg, s->p->tmp_i.avail); + } + break; } } extern void dill_dealloc_specific(dill_stream s, dill_reg reg, int type, int class) { - switch(type) { - case DILL_D: case DILL_F: - if (class == DILL_VAR) { - RESET_BIT(reg, s->p->var_f.avail); - SET_BIT(reg, s->p->var_f.mustsave); - } else { - RESET_BIT(reg, s->p->tmp_f.avail); - } - break; + switch (type) { + case DILL_D: + case DILL_F: + if (class == DILL_VAR) { + RESET_BIT(reg, s->p->var_f.avail); + SET_BIT(reg, s->p->var_f.mustsave); + } else { + RESET_BIT(reg, s->p->tmp_f.avail); + } + break; default: - if (class == DILL_VAR) { - RESET_BIT(reg, s->p->var_i.avail); - SET_BIT(reg, s->p->var_i.mustsave); - } else { - RESET_BIT(reg, s->p->tmp_i.avail); - } - break; + if (class == DILL_VAR) { + RESET_BIT(reg, s->p->var_i.avail); + SET_BIT(reg, s->p->var_i.mustsave); + } else { + RESET_BIT(reg, s->p->tmp_i.avail); + } + break; } } @@ -959,51 +1058,53 @@ extern void dill_raw_unavailreg(dill_stream s, int type, dill_reg reg) { if (s->p->unavail_called == 0) { - reset_context(s); - s->p->unavail_called = 1; + reset_context(s); + s->p->unavail_called = 1; } - switch(type) { - case DILL_D: case DILL_F: - RESET_BIT(reg, s->p->var_f.avail); - RESET_BIT(reg, s->p->tmp_f.avail); - break; + switch (type) { + case DILL_D: + case DILL_F: + RESET_BIT(reg, s->p->var_f.avail); + RESET_BIT(reg, s->p->tmp_f.avail); + break; default: - RESET_BIT(reg, s->p->var_i.avail); - RESET_BIT(reg, s->p->tmp_i.avail); - break; + RESET_BIT(reg, s->p->var_i.avail); + RESET_BIT(reg, s->p->tmp_i.avail); + break; } } extern void dill_raw_availreg(dill_stream s, int type, dill_reg reg) { - switch(type) { - case DILL_D: case DILL_F: - if (BIT_ON(reg, s->p->tmp_f.members)) { - SET_BIT(reg, s->p->tmp_f.avail); - } else if (BIT_ON(reg, s->p->var_f.members)) { - SET_BIT(reg, s->p->var_f.avail); - } else { - printf("mk avail not in set error %d\n", reg); - } - break; + switch (type) { + case DILL_D: + case DILL_F: + if (BIT_ON(reg, s->p->tmp_f.members)) { + SET_BIT(reg, s->p->tmp_f.avail); + } else if (BIT_ON(reg, s->p->var_f.members)) { + SET_BIT(reg, s->p->var_f.avail); + } else { + printf("mk avail not in set error %d\n", reg); + } + break; default: - if (BIT_ON(reg, s->p->tmp_i.members)) { - SET_BIT(reg, s->p->tmp_i.avail); - } else if (BIT_ON(reg, s->p->var_i.members)) { - SET_BIT(reg, s->p->var_i.avail); - } else { - printf("mk avail not in set error %d\n", reg); - } - break; + if (BIT_ON(reg, s->p->tmp_i.members)) { + SET_BIT(reg, s->p->tmp_i.avail); + } else if (BIT_ON(reg, s->p->var_i.members)) { + SET_BIT(reg, s->p->var_i.avail); + } else { + printf("mk avail not in set error %d\n", reg); + } + break; } } extern int dill_getreg(dill_stream s, int typ) { - s->p->vregs = realloc(s->p->vregs, - (s->p->vreg_count +1) * sizeof(vreg_info)); + s->p->vregs = + realloc(s->p->vregs, (s->p->vreg_count + 1) * sizeof(vreg_info)); s->p->vregs[s->p->vreg_count].typ = typ; s->p->vregs[s->p->vreg_count].use_info.use_count = 0; s->p->vregs[s->p->vreg_count].use_info.def_count = 0; @@ -1014,8 +1115,8 @@ dill_getreg(dill_stream s, int typ) extern int dill_getvblock(dill_stream s, int size) { - s->p->vregs = realloc(s->p->vregs, - (s->p->vreg_count +1) * sizeof(vreg_info)); + s->p->vregs = + realloc(s->p->vregs, (s->p->vreg_count + 1) * sizeof(vreg_info)); s->p->vregs[s->p->vreg_count].typ = DILL_B; s->p->vregs[s->p->vreg_count].offset = size; s->p->vregs[s->p->vreg_count].use_info.use_count = 0; @@ -1023,100 +1124,103 @@ dill_getvblock(dill_stream s, int size) return ((s->p->vreg_count++) + 100); } -extern int -dill_raw_getreg(dill_stream s, dill_reg *reg_p, int type, int class) +extern int +dill_raw_getreg(dill_stream s, dill_reg* reg_p, int type, int class) { int reg = -1; switch (type) { - case DILL_D: case DILL_F: - if (class == DILL_VAR) { - if ((reg = reg_alloc(&s->p->var_f)) == -1) { - reg = reg_alloc(&s->p->tmp_f); - } - if (reg != -1) { - SET_BIT(reg, s->p->tmp_f.mustsave); - SET_BIT(reg, s->p->tmp_f.used); - } - *reg_p = reg; - return (reg != -1); - } else { - if ((reg = reg_alloc(&s->p->tmp_f)) == -1) { - reg = reg_alloc(&s->p->var_f); - } - if (reg != -1) { - SET_BIT(reg, s->p->tmp_f.used); - } - *reg_p = reg; - return (reg != -1); - } + case DILL_D: + case DILL_F: + if (class == DILL_VAR) { + if ((reg = reg_alloc(&s->p->var_f)) == -1) { + reg = reg_alloc(&s->p->tmp_f); + } + if (reg != -1) { + SET_BIT(reg, s->p->tmp_f.mustsave); + SET_BIT(reg, s->p->tmp_f.used); + } + *reg_p = reg; + return (reg != -1); + } else { + if ((reg = reg_alloc(&s->p->tmp_f)) == -1) { + reg = reg_alloc(&s->p->var_f); + } + if (reg != -1) { + SET_BIT(reg, s->p->tmp_f.used); + } + *reg_p = reg; + return (reg != -1); + } default: - if (class == DILL_VAR) { - if ((reg = reg_alloc(&s->p->var_i)) == -1) { - reg = reg_alloc(&s->p->tmp_i); - if (reg != -1) { - SET_BIT(reg, s->p->tmp_i.mustsave); - SET_BIT(reg, s->p->tmp_i.used); - } - } else { - SET_BIT(reg, s->p->var_i.used); - } - *reg_p = reg; - return (reg != -1); - } else { - if ((reg = reg_alloc(&s->p->tmp_i)) == -1) { - reg = reg_alloc(&s->p->var_i); - } - if (reg != -1) { - SET_BIT(reg, s->p->tmp_i.used); - } - *reg_p = reg; - return (reg != -1); - } + if (class == DILL_VAR) { + if ((reg = reg_alloc(&s->p->var_i)) == -1) { + reg = reg_alloc(&s->p->tmp_i); + if (reg != -1) { + SET_BIT(reg, s->p->tmp_i.mustsave); + SET_BIT(reg, s->p->tmp_i.used); + } + } else { + SET_BIT(reg, s->p->var_i.used); + } + *reg_p = reg; + return (reg != -1); + } else { + if ((reg = reg_alloc(&s->p->tmp_i)) == -1) { + reg = reg_alloc(&s->p->var_i); + } + if (reg != -1) { + SET_BIT(reg, s->p->tmp_i.used); + } + *reg_p = reg; + return (reg != -1); + } } -} +} extern void dill_raw_putreg(dill_stream s, dill_reg reg, int type) { switch (type) { - case DILL_F: case DILL_D: - if (BIT_ON(reg, s->p->tmp_f.members)) { - dill_alloc_specific(s, reg, type, DILL_TEMP); - } else if (BIT_ON(reg, s->p->var_f.members)) { - dill_alloc_specific(s, reg, type, DILL_VAR); - } else { - /* - * special case, if the put reg is invalid (-1) and - * the member set is empty, give no warning. - */ - if ((s->p->var_f.members[0] != 0) || (reg != -1)) { - printf("Putreg not in set error %d\n", reg); - } - } - break; + case DILL_F: + case DILL_D: + if (BIT_ON(reg, s->p->tmp_f.members)) { + dill_alloc_specific(s, reg, type, DILL_TEMP); + } else if (BIT_ON(reg, s->p->var_f.members)) { + dill_alloc_specific(s, reg, type, DILL_VAR); + } else { + /* + * special case, if the put reg is invalid (-1) and + * the member set is empty, give no warning. + */ + if ((s->p->var_f.members[0] != 0) || (reg != -1)) { + printf("Putreg not in set error %d\n", reg); + } + } + break; default: - if (BIT_ON(reg, s->p->tmp_i.members)) { - dill_alloc_specific(s, reg, type, DILL_TEMP); - } else if (BIT_ON(reg, s->p->var_i.members)) { - dill_alloc_specific(s, reg, type, DILL_VAR); - } else { - printf("Putreg not in set error %d\n", reg); - } - break; + if (BIT_ON(reg, s->p->tmp_i.members)) { + dill_alloc_specific(s, reg, type, DILL_TEMP); + } else if (BIT_ON(reg, s->p->var_i.members)) { + dill_alloc_specific(s, reg, type, DILL_VAR); + } else { + printf("Putreg not in set error %d\n", reg); + } + break; } -} +} -extern int +extern int dill_do_reverse_vararg_push(dill_stream s) { if (s->j->do_reverse_push) { - s->p->doing_reverse_push = 1; - return 1; + s->p->doing_reverse_push = 1; + return 1; } return 0; } -extern void dill_end_vararg_push(dill_stream s) +extern void +dill_end_vararg_push(dill_stream s) { s->p->doing_reverse_push = 0; } @@ -1125,9 +1229,9 @@ extern int dill_type_of(dill_stream s, int vreg) { if (vreg >= 100) { - return s->p->vregs[vreg - 100].typ; + return s->p->vregs[vreg - 100].typ; } else { - return s->p->c_param_args[vreg].type; + return s->p->c_param_args[vreg].type; } } @@ -1136,13 +1240,13 @@ typedef union { int i; long l; unsigned long ul; - void *p; + void* p; float f; double d; } type_union; -static void -do_vararg_push(dill_stream s, const char *arg_str, va_list ap) +static void +do_vararg_push(dill_stream s, const char* arg_str, va_list ap) { int i, arg_count; int reverse = 0; @@ -1153,93 +1257,108 @@ do_vararg_push(dill_stream s, const char *arg_str, va_list ap) reverse = dill_do_reverse_vararg_push(s); - for(i = 0; i < arg_count; i++) { - if(!args[i].is_immediate) { - value[i].i = va_arg(ap, int); - } else { - switch(args[i].type) { - case DILL_UC: case DILL_US: case DILL_U: - value[i].u = va_arg(ap, unsigned); - break; - case DILL_C: case DILL_S: case DILL_I: - value[i].i = va_arg(ap, int); - break; - case DILL_L: - value[i].l = va_arg(ap, long); - break; - case DILL_UL: - value[i].ul = va_arg(ap, unsigned long); - break; - case DILL_P: - value[i].p = va_arg(ap, void *); - break; - case DILL_F: - value[i].f = (float)va_arg(ap, double); - break; - case DILL_D: - value[i].d = va_arg(ap, double); - break; - default: - fprintf(stderr, - "do_push_args: unknown type\n"); - exit(1); - } - } + for (i = 0; i < arg_count; i++) { + if (!args[i].is_immediate) { + value[i].i = va_arg(ap, int); + } else { + switch (args[i].type) { + case DILL_UC: + case DILL_US: + case DILL_U: + value[i].u = va_arg(ap, unsigned); + break; + case DILL_C: + case DILL_S: + case DILL_I: + value[i].i = va_arg(ap, int); + break; + case DILL_L: + value[i].l = va_arg(ap, long); + break; + case DILL_UL: + value[i].ul = va_arg(ap, unsigned long); + break; + case DILL_P: + value[i].p = va_arg(ap, void*); + break; + case DILL_F: + value[i].f = (float)va_arg(ap, double); + break; + case DILL_D: + value[i].d = va_arg(ap, double); + break; + default: + fprintf(stderr, "do_push_args: unknown type\n"); + exit(1); + } + } } /* push all arguments */ - for(i = 0; i < arg_count; i++) { - int arg = i; - if (reverse) { - arg = arg_count - i - 1; - } - if(!args[arg].is_immediate) { - dill_push_arg(s, args[arg].type, value[arg].i); - } else { - switch(args[arg].type) { - case DILL_UC: case DILL_US: case DILL_U: - dill_push_argui(s, value[arg].u); - break; - case DILL_C: case DILL_S: case DILL_I: - dill_push_argii(s, value[arg].i); - break; - case DILL_L: - dill_push_argli(s, value[arg].l); - break; - case DILL_UL: - dill_push_arguli(s, value[arg].ul); - break; - case DILL_P: - dill_push_argpi(s, value[arg].p); - break; - case DILL_F: - dill_push_argfi(s, value[arg].f); - break; - case DILL_D: - dill_push_argdi(s, value[arg].d); - break; - default: - fprintf(stderr, - "do_push_args: unknown type\n"); - exit(1); - } - } + for (i = 0; i < arg_count; i++) { + int arg = i; + if (reverse) { + arg = arg_count - i - 1; + } + if (!args[arg].is_immediate) { + dill_push_arg(s, args[arg].type, value[arg].i); + } else { + switch (args[arg].type) { + case DILL_UC: + case DILL_US: + case DILL_U: + dill_push_argui(s, value[arg].u); + break; + case DILL_C: + case DILL_S: + case DILL_I: + dill_push_argii(s, value[arg].i); + break; + case DILL_L: + dill_push_argli(s, value[arg].l); + break; + case DILL_UL: + dill_push_arguli(s, value[arg].ul); + break; + case DILL_P: + dill_push_argpi(s, value[arg].p); + break; + case DILL_F: + dill_push_argfi(s, value[arg].f); + break; + case DILL_D: + dill_push_argdi(s, value[arg].d); + break; + default: + fprintf(stderr, "do_push_args: unknown type\n"); + exit(1); + } + } } free(args); } - -void dill_scallv(dill_stream s, void *ptr, const char *name, const char *arg_str, ...) +void +dill_scallv(dill_stream s, + void* ptr, + const char* name, + const char* arg_str, + ...) { va_list ap; va_start(ap, arg_str); do_vararg_push(s, arg_str, ap); - (void) s->j->calli(s, DILL_V, ptr, (char*)name); + (void)s->j->calli(s, DILL_V, ptr, (char*)name); va_end(ap); } -int dill_scalli(dill_stream s, void* ptr, const char *name, const char *arg_str, ...) +int +dill_scalli(dill_stream s, + void* ptr, + const char* name, + const char* arg_str, + ...) { int ret_reg; va_list ap; @@ -1250,7 +1369,13 @@ int dill_scalli(dill_stream s, void* ptr, const char *name, const char *arg_str, return ret_reg; } -int dill_scallu(dill_stream s, void *ptr, const char *name, const char *arg_str, ...) { +int +dill_scallu(dill_stream s, + void* ptr, + const char* name, + const char* arg_str, + ...) +{ int ret_reg; va_list ap; va_start(ap, arg_str); @@ -1260,7 +1385,13 @@ int dill_scallu(dill_stream s, void *ptr, const char *name, const char *arg_str, return ret_reg; } -int dill_scallp(dill_stream s, void *ptr, const char *name, const char *arg_str, ...) { +int +dill_scallp(dill_stream s, + void* ptr, + const char* name, + const char* arg_str, + ...) +{ int ret_reg; va_list ap; va_start(ap, arg_str); @@ -1270,7 +1401,13 @@ int dill_scallp(dill_stream s, void *ptr, const char *name, const char *arg_str, return ret_reg; } -int dill_scallul(dill_stream s, void *ptr, const char *name, const char *arg_str, ...) { +int +dill_scallul(dill_stream s, + void* ptr, + const char* name, + const char* arg_str, + ...) +{ int ret_reg; va_list ap; va_start(ap, arg_str); @@ -1280,7 +1417,13 @@ int dill_scallul(dill_stream s, void *ptr, const char *name, const char *arg_str return ret_reg; } -int dill_scalll(dill_stream s, void *ptr, const char *name, const char *arg_str, ...) { +int +dill_scalll(dill_stream s, + void* ptr, + const char* name, + const char* arg_str, + ...) +{ int ret_reg; va_list ap; va_start(ap, arg_str); @@ -1290,7 +1433,13 @@ int dill_scalll(dill_stream s, void *ptr, const char *name, const char *arg_str, return ret_reg; } -int dill_scallf(dill_stream s, void *ptr, const char *name, const char *arg_str, ...) { +int +dill_scallf(dill_stream s, + void* ptr, + const char* name, + const char* arg_str, + ...) +{ int ret_reg; va_list ap; va_start(ap, arg_str); @@ -1300,7 +1449,13 @@ int dill_scallf(dill_stream s, void *ptr, const char *name, const char *arg_str, return ret_reg; } -int dill_scalld(dill_stream s, void *ptr, const char *name, const char *arg_str, ...) { +int +dill_scalld(dill_stream s, + void* ptr, + const char* name, + const char* arg_str, + ...) +{ int ret_reg; va_list ap; va_start(ap, arg_str); @@ -1311,34 +1466,43 @@ int dill_scalld(dill_stream s, void *ptr, const char *name, const char *arg_str, } extern void -dill_error(char *msg) +dill_error(char* msg) { printf("%s", msg); } extern void -dill_pbr(dill_stream s, int op_type, int data_type, dill_reg src1, dill_reg src2, - int label) +dill_pbr(dill_stream s, + int op_type, + int data_type, + dill_reg src1, + dill_reg src2, + int label) { int index; - if ((op_type < dill_eq_code ) || (op_type > dill_ne_code)) { - printf("Bad op type in dill_pbr\n"); + if ((op_type < dill_eq_code) || (op_type > dill_ne_code)) { + printf("Bad op type in dill_pbr\n"); } index = data_type + 11 * op_type; - (s->j->jmp_b)[index](s, s->j->b_data[index].data1, - s->j->b_data[index].data2, src1, src2, label); + (s->j->jmp_b)[index](s, s->j->b_data[index].data1, + s->j->b_data[index].data2, src1, src2, label); } extern void -dill_pcompare(dill_stream s, int op_type, int data_type, dill_reg dest, dill_reg src1, dill_reg src2) +dill_pcompare(dill_stream s, + int op_type, + int data_type, + dill_reg dest, + dill_reg src1, + dill_reg src2) { int index; - if ((op_type < dill_eq_code ) || (op_type > dill_ne_code)) { - printf("Bad op type in dill_pcompare\n"); + if ((op_type < dill_eq_code) || (op_type > dill_ne_code)) { + printf("Bad op type in dill_pcompare\n"); } index = data_type + 11 * op_type; - (s->j->jmp_c)[index](s, s->j->c_data[index].data1, - s->j->c_data[index].data2, dest, src1, src2); + (s->j->jmp_c)[index](s, s->j->c_data[index].data1, + s->j->c_data[index].data2, dest, src1, src2); } extern void @@ -1347,9 +1511,9 @@ dill_dump_reg(dill_stream s, int typ, int reg) s->j->print_reg(s, typ, reg); } -#if !defined (HAVE_DIS_ASM_H) || defined(NO_DISASSEMBLER) +#if !defined(HAVE_DIS_ASM_H) || defined(NO_DISASSEMBLER) struct disassemble_info { - void *junk; + void* junk; }; #endif @@ -1359,120 +1523,105 @@ struct disassemble_info { #include "dis-asm.h" #ifndef NO_INLINED_BFD_PROCS #if defined(BFD64) -bfd_vma -bfd_getl64 (addr) +bfd_vma bfd_getl64(addr) #ifdef BFD_BYTE - register const bfd_byte *addr; + register const bfd_byte* addr; #else - const void *addr; + const void* addr; #endif { #if SIZEOF_LONG == 8 - register const unsigned char *addrp = addr; - bfd_vma low, high; - high= (((((((addrp[7] << 8) | - addrp[6]) << 8) | - addrp[5]) << 8) | - addrp[4])); - - low = ((((((((bfd_vma)addrp[3] << 8) | - addrp[2]) << 8) | - addrp[1]) << 8) | - addrp[0]) ); - - return high << 32 | low; + register const unsigned char* addrp = addr; + bfd_vma low, high; + high = + (((((((addrp[7] << 8) | addrp[6]) << 8) | addrp[5]) << 8) | addrp[4])); + + low = ((((((((bfd_vma)addrp[3] << 8) | addrp[2]) << 8) | addrp[1]) << 8) | + addrp[0])); + + return high << 32 | low; #else - return 0; + return 0; #endif - } #endif -bfd_vma -bfd_getb32 (addr) +bfd_vma bfd_getb32(addr) #ifdef BFD_BYTE - register const bfd_byte *addr; + register const bfd_byte* addr; #else - const void *addr; + const void* addr; #endif { - register const unsigned char *addrp = addr; - return (((((bfd_vma)addrp[0] << 8) | addrp[1]) << 8) - | addrp[2]) << 8 | addrp[3]; + register const unsigned char* addrp = addr; + return (((((bfd_vma)addrp[0] << 8) | addrp[1]) << 8) | addrp[2]) << 8 | + addrp[3]; } -bfd_vma -bfd_getl32 (addr) +bfd_vma bfd_getl32(addr) #ifdef BFD_BYTE - register const bfd_byte *addr; + register const bfd_byte* addr; #else - const void *addr; + const void* addr; #endif { - register const unsigned char *addrp = addr; - return (((((bfd_vma)addrp[3] << 8) | addrp[2]) << 8) - | addrp[1]) << 8 | addrp[0]; + register const unsigned char* addrp = addr; + return (((((bfd_vma)addrp[3] << 8) | addrp[2]) << 8) | addrp[1]) << 8 | + addrp[0]; } -bfd_vma -bfd_getb16 (addr) +bfd_vma bfd_getb16(addr) #ifdef BFD_BYTE - register const bfd_byte *addr; + register const bfd_byte* addr; #else - const void *addr; + const void* addr; #endif { - register const unsigned char *addrp = addr; - return (addrp[0] << 8) | addrp[1]; + register const unsigned char* addrp = addr; + return (addrp[0] << 8) | addrp[1]; } -bfd_vma -bfd_getl16 (addr) +bfd_vma bfd_getl16(addr) #ifdef BFD_BYTE - register const bfd_byte *addr; + register const bfd_byte* addr; #else - const void *addr; + const void* addr; #endif { - register const unsigned char *addrp = addr; - return (addrp[1] << 8) | addrp[0]; + register const unsigned char* addrp = addr; + return (addrp[1] << 8) | addrp[0]; } -enum bfd_architecture -bfd_get_arch (abfd) - bfd *abfd; +enum bfd_architecture bfd_get_arch(abfd) bfd* abfd; { return abfd->arch_info->arch; } -void * -xmalloc(size) -int size; +void* xmalloc(size) int size; { return (void*)malloc(size); } -char * -xstrdup (s) - const char *s; +char* xstrdup(s) const char* s; { - int len; - char *ret; + int len; + char* ret; - len = strlen (s); - ret = xmalloc (len + 1); - strcpy (ret, s); - return ret; + len = strlen(s); + ret = xmalloc(len + 1); + strcpy(ret, s); + return ret; } #endif extern void -dump_dill_insn(dill_stream s, void *p) +dump_dill_insn(dill_stream s, void* p) { struct disassemble_info info; int l; - if (s->j->init_disassembly(s, &info) == 0) return; + if (s->j->init_disassembly(s, &info) == 0) + return; printf("%lx - %x - ", (unsigned long)p, (unsigned int)*(int*)p); l = s->j->print_insn(s, &info, p); @@ -1489,6 +1638,13 @@ dump_cur_dill_insn(dill_stream s) extern void dump_cur_dill_insn(dill_stream s) { + struct disassemble_info info; + s->j->init_disassembly(s, &info); + + void* p = s->p->cur_ip; + printf("%p - %x - ", p, (unsigned)*(int*)p); + (void)s->j->print_insn(s, &info, (void*)p); + printf("\n"); } #endif @@ -1496,75 +1652,99 @@ extern void dill_dump(dill_stream s) { struct disassemble_info info; - void *base = s->p->code_base; + void* base = s->p->code_base; int native_missing = 0; - if ((base != s->p->virtual.code_base) && - (s->p->virtual.code_base != NULL) && (s->p->virtual.mach_jump != NULL)){ - /* Section to dump virtual code base *after* dcg completion */ - /* only do this if we're not currently in the middle of virtual generation */ - void *code_limit = s->p->virtual.cur_ip; - base = s->p->virtual.code_base; - s->p->virtual.mach_jump->init_disassembly(s, &info); - void *p; - int l; - int insn_count = 0; - printf("\nDILL virtual instruction stream\n\n"); - for (p =base; p < code_limit;) { - printf("%p - %x - ", p, (unsigned)*(int*)p); - l = s->p->virtual.mach_jump->print_insn(s, &info, (void *)p); - printf("\n"); - if (l == -1) return; - p = (char*)p + l; - insn_count++; - } - printf("\nDumped %d virtual instructions\n\n", insn_count); + (s->p->virtual.code_base != NULL) && + (s->p->virtual.mach_jump != NULL)) { + /* Section to dump virtual code base *after* dcg completion */ + /* only do this if we're not currently in the middle of virtual + * generation */ + void* code_limit = s->p->virtual.cur_ip; + base = s->p->virtual.code_base; + s->p->virtual.mach_jump->init_disassembly(s, &info); + void* p; + int l; + int insn_count = 0; + printf("\nDILL virtual instruction stream\n\n"); + for (p = base; p < code_limit;) { + printf("%p - %x - ", p, (unsigned)*(int*)p); + l = s->p->virtual.mach_jump->print_insn(s, &info, (void*)p); + printf("\n"); + if (l == -1) + return; + p = (char*)p + l; + insn_count++; + } + printf("\nDumped %d virtual instructions\n\n", insn_count); } #if defined(NO_DISASSEMBLER) native_missing = 1; #endif base = s->p->code_base; if (base == NULL) { - base = s->p->native.code_base; + base = s->p->native.code_base; } if (base == NULL) { - printf("No code to dump\n"); - return; + printf("No code to dump\n"); + return; } /* if ((s->j != s->p->virtual.mach_jump) && native_missing) { */ /* printf("No native disassembler available\n"); */ /* return; */ /* } */ - (void) native_missing; + (void)native_missing; if (s->j->init_disassembly(s, &info) == 0) { - printf("No native disassembler available\n"); + printf("No native disassembler available\n"); } else { - void *p; - int l; - int insn_count = 0; - if ((s->j != s->p->virtual.mach_jump) && (s->p->fp != NULL) ) - base = s->p->fp; - for (p =base; (char*) p < s->p->cur_ip;) { - int i; - struct branch_table *t = &s->p->branch_table; - for (i=0; i < t->next_label; i++) { - if (t->label_locs[i] == - ((char*)p - (char*)base)) { - printf("L%d:\n", i); - } - } - if (p == s->p->fp) { - printf("Function entry point:\n"); - } - printf("%p - %x - ", p, (unsigned)*(int*)p); - l = s->j->print_insn(s, &info, (void *)p); - printf("\n"); - if (l <= 0) return; - p = (char*)p + l; - insn_count++; - } - printf("\nDumped %d instructions\n\n", insn_count); + void* p; + int l; + int insn_count = 0; + if ((s->j != s->p->virtual.mach_jump) && (s->p->fp != NULL)) + base = s->p->fp; + for (p = base; (char*)p < s->p->cur_ip;) { + int i; + struct branch_table* t = &s->p->branch_table; + for (i = 0; i < t->next_label; i++) { + if (t->label_locs[i] == ((char*)p - (char*)base)) { + printf("L%d:\n", i); + } + } + if (p == s->p->fp) { + printf("Function entry point:\n"); + } + printf("%p - %x - ", p, (unsigned)*(int*)p); + l = s->j->print_insn(s, &info, (void*)p); + printf("\n"); + if (l <= 0) + return; + p = (char*)p + l; + insn_count++; + } + printf("\nDumped %d instructions\n\n", insn_count); } } +#undef malloc +#undef realloc + +extern void* +dill_malloc(size_t size) +{ + void* tmp = malloc(size); + if (tmp) + return tmp; + fprintf(stderr, "Dill out of memory, exiting\n"); + exit(1); +} + +extern void* +dill_realloc(void* ptr, size_t size) +{ + void* tmp = realloc(ptr, size); + if (tmp) + return tmp; + fprintf(stderr, "Dill out of memory, exiting\n"); + exit(1); +} diff --git a/tests/CMakeLists.txt b/tests/CMakeLists.txt index 8662e65a31..44e135155b 100644 --- a/tests/CMakeLists.txt +++ b/tests/CMakeLists.txt @@ -34,9 +34,12 @@ if(NOT (CMAKE_C_COMPILER_ID MATCHES "MSVC" OR set_target_properties(dill_regress PROPERTIES COMPILE_FLAGS "-O0") endif() -add_executable(cplus cplus.cc) -target_link_libraries(cplus dill ${DIS_LIBS}) -add_test(NAME dill_cplus COMMAND cplus) +if(NOT (CMAKE_C_COMPILER_ID MATCHES "MSVC" OR + CMAKE_C_SIMULATE_ID MATCHES "MSVC")) + add_executable(cplus cplus.cc) + target_link_libraries(cplus dill ${DIS_LIBS}) + add_test(NAME dill_cplus COMMAND cplus) +endif() add_executable(stest stest.c) target_link_libraries(stest dill ${DIS_LIBS}) diff --git a/tests/call-gen b/tests/call-gen index 0c8d5da4ed..6ff2765532 100644 --- a/tests/call-gen +++ b/tests/call-gen @@ -195,7 +195,7 @@ int main(int argc, char *argv[]) { s2l = rand() + 1; s1f = (float)rand() / rand(); - s2f = (float)rand() / (rand()+1) * ((rand()%1) ? 1. : -1.); + s2f = (float)rand() / (float) ((rand()+1) * ((rand()%1) ? 1. : -1.)); s1d = (double)rand() / rand(); s2d = (double)rand() / (rand()+1) * ((rand()%1) ? 1. : -1.); diff --git a/tests/stest.c b/tests/stest.c index db89d57c2b..05be83c703 100644 --- a/tests/stest.c +++ b/tests/stest.c @@ -134,6 +134,10 @@ int main() { if (target == (void*)-1) perror("mmap"); #else target = (void*)malloc(dill_code_size(s)); + if (!target) { + printf("out of memory\n"); + return 1; + } #endif ip = (int (*)()) dill_clone_code(s, target, dill_code_size(s)); dill_free_stream(s); diff --git a/tests/test-gen b/tests/test-gen index 22c2a134de..3da37510d7 100644 --- a/tests/test-gen +++ b/tests/test-gen @@ -208,6 +208,12 @@ sub emit_unary { $insni = "$insn" . "i"; $cast1 = ($t eq "p") ? "" : ""; + if (($op eq '-') and ($t eq "u")) { + $op = '(unsigned) - (int)'; + } + if (($op eq '-') and ($t eq "ul")) { + $op = '(uintptr_t) - (intptr_t)'; + } $upt = "\U$t\E"; print<\n#include \"string.h\"\n#include \"dill.h\"\n#include \n#include \n\n"; + print "int dill_errors;\n#include \n#include \"string.h\"\n#include \"dill.h\"\n#include \n#include \n#include \n\n"; print< -#include "config.h" -#include "dill.h" -#include "dill_internal.h" -#include "virtual.h" -#ifndef LINUX_KERNEL_MODULE -#include -#include #include +#include +#include #include -#ifdef HAVE_MALLOC_H -#include -#endif -#include +#include "config.h" +#include "dill.h" +#ifdef _MSC_VER +#include +typedef SSIZE_T ssize_t; #else -#ifdef LINUX_KERNEL_MODULE -#ifndef __KERNEL__ -#define __KERNEL__ -#endif -#endif -#include -#include -#include -#include "kdill.h" -#include "library.h" - -#define printf printk -#define fprintf(file, args...) printk (args) -#define malloc (void *)DAllocMM -#define realloc(a,b) (void *)DReallocMM((addrs_t)a, b) -#define free(a) DFreeMM((addrs_t) a) -#define qsort _quicksort +#include #endif +#include "dill_internal.h" +#include "virtual.h" -extern char *arith3_name[]; -extern char *arith2_name[]; -extern char *dill_type_names[]; -extern char *branch_op_names[]; -extern char *compare_op_names[]; +extern char* arith3_name[]; +extern char* arith2_name[]; +extern char* dill_type_names[]; +extern char* branch_op_names[]; +extern char* compare_op_names[]; -typedef void (*apply_func)(dill_stream c, basic_block b, - virtual_insn *ip, int loc); +typedef void (*apply_func)(dill_stream c, + basic_block b, + virtual_insn* ip, + int loc); -static void apply_to_each(dill_stream c, void *insns, virtual_mach_info vmi, - apply_func func); +static void +apply_to_each(dill_stream c, + void* insns, + virtual_mach_info vmi, + apply_func func); -static const char *prefix_names[] = {"X86_CS_PREFIX", "X86_SS_PREFIX", - "X86_DS_PREFIX", "X86_ES_PREFIX", - "X86_FS_PREFIX", "X86_GS_PREFIX"}; +static const char* prefix_names[] = {"X86_CS_PREFIX", "X86_SS_PREFIX", + "X86_DS_PREFIX", "X86_ES_PREFIX", + "X86_FS_PREFIX", "X86_GS_PREFIX"}; -#define OPND(x) ((x >= 100) ? ((dill_type_of(c, x) == DILL_B) ? 'B' : 'R') :'P'), x +#define OPND(x) \ + ((x >= 100) ? ((dill_type_of(c, x) == DILL_B) ? 'B' : 'R') : 'P'), x extern int -virtual_print_insn(dill_stream c, void *info_ptr, void *i) +virtual_print_insn(dill_stream c, void* info_ptr, void* i) { - virtual_insn *insn = (virtual_insn *)i; + virtual_insn* insn = (virtual_insn*)i; int insn_code = insn->insn_code; - switch(insn->class_code) { + switch (insn->class_code) { case iclass_arith3: - printf("%s %c%d, %c%d, %c%d", arith3_name[insn_code], - OPND(insn->opnds.a3.dest), - OPND(insn->opnds.a3.src1), - OPND(insn->opnds.a3.src2)); + printf("%s %c%d, %c%d, %c%d", arith3_name[insn_code], + OPND(insn->opnds.a3.dest), OPND(insn->opnds.a3.src1), + OPND(insn->opnds.a3.src2)); break; case iclass_arith3i: - printf("%si %c%d, %c%d, %zu", arith3_name[insn_code], - OPND(insn->opnds.a3i.dest), - OPND(insn->opnds.a3i.src), insn->opnds.a3i.u.imm); + printf("%si %c%d, %c%d, %zu", arith3_name[insn_code], + OPND(insn->opnds.a3i.dest), OPND(insn->opnds.a3i.src), + insn->opnds.a3i.u.imm); break; case iclass_arith2: printf("%s %c%d, %c%d", arith2_name[insn_code], - OPND(insn->opnds.a2.dest), OPND(insn->opnds.a2.src)); + OPND(insn->opnds.a2.dest), OPND(insn->opnds.a2.src)); break; - case iclass_convert: - { - int from_index = (insn->insn_code >> 4) & 0xf; - int to_index = insn->insn_code & 0xf; + case iclass_convert: { + int from_index = (insn->insn_code >> 4) & 0xf; + int to_index = insn->insn_code & 0xf; printf("cv%s2%s %c%d, %c%d", dill_type_names[from_index], - dill_type_names[to_index], OPND(insn->opnds.a2.dest), - OPND(insn->opnds.a2.src)); + dill_type_names[to_index], OPND(insn->opnds.a2.dest), + OPND(insn->opnds.a2.src)); break; } - case iclass_loadstore: - { - int typ = insn->insn_code & 0xf; - int store = (insn->insn_code & 0x10) == 0x10; - int bswap = (insn->insn_code & 0x20) == 0x20; + case iclass_loadstore: { + int typ = insn->insn_code & 0xf; + int store = (insn->insn_code & 0x10) == 0x10; + int bswap = (insn->insn_code & 0x20) == 0x20; printf("%s%s%s %c%d, %c%d, %c%d", bswap ? "bs" : "", - store == 0 ? "ld" : "st", - dill_type_names[typ], OPND(insn->opnds.a3.dest), - OPND(insn->opnds.a3.src1), OPND(insn->opnds.a3.src2)); + store == 0 ? "ld" : "st", dill_type_names[typ], + OPND(insn->opnds.a3.dest), OPND(insn->opnds.a3.src1), + OPND(insn->opnds.a3.src2)); break; } - case iclass_loadstorei: - { - int typ = insn->insn_code & 0xf; - int store = (insn->insn_code & 0x10) == 0x10; - int bswap = (insn->insn_code & 0x20) == 0x20; + case iclass_loadstorei: { + int typ = insn->insn_code & 0xf; + int store = (insn->insn_code & 0x10) == 0x10; + int bswap = (insn->insn_code & 0x20) == 0x20; printf("%s%s%si %c%d, %c%d, %zu", bswap ? "bs" : "", - store == 0 ? "ld" : "st", - dill_type_names[typ], OPND(insn->opnds.a3i.dest), - OPND(insn->opnds.a3i.src), insn->opnds.a3i.u.imm); + store == 0 ? "ld" : "st", dill_type_names[typ], + OPND(insn->opnds.a3i.dest), OPND(insn->opnds.a3i.src), + insn->opnds.a3i.u.imm); break; } - case iclass_lea: - { + case iclass_lea: { printf("lea %c%d, %c%d, %zx", OPND(insn->opnds.a3i.dest), - OPND(insn->opnds.a3i.src), insn->opnds.a3i.u.imm); + OPND(insn->opnds.a3i.src), insn->opnds.a3i.u.imm); break; } - case iclass_set: - { - int typ = insn->insn_code & 0xf; - printf("set%s %c%d, %zx", - dill_type_names[typ], OPND(insn->opnds.a3i.dest), - insn->opnds.a3i.u.imm); + case iclass_set: { + int typ = insn->insn_code & 0xf; + printf("set%s %c%d, %zx", dill_type_names[typ], + OPND(insn->opnds.a3i.dest), insn->opnds.a3i.u.imm); break; } - case iclass_setf: - { - int typ = insn->insn_code & 0xf; - union { - double imm; - int imm_i[2]; - } u; - u.imm = insn->opnds.sf.imm; - printf("set%s %c%d, %g 0x(%x)0x(%x)", - dill_type_names[typ], OPND(insn->opnds.sf.dest), - insn->opnds.sf.imm, u.imm_i[0], u.imm_i[1]); + case iclass_setf: { + int typ = insn->insn_code & 0xf; + union { + double imm; + int imm_i[2]; + } u; + u.imm = insn->opnds.sf.imm; + printf("set%s %c%d, %g 0x(%x)0x(%x)", dill_type_names[typ], + OPND(insn->opnds.sf.dest), insn->opnds.sf.imm, u.imm_i[0], + u.imm_i[1]); break; } - case iclass_mov: - { - int typ = insn->insn_code & 0xf; - printf("mov%s %c%d, %c%d", - dill_type_names[typ], OPND(insn->opnds.a2.dest), - OPND(insn->opnds.a2.src)); + case iclass_mov: { + int typ = insn->insn_code & 0xf; + printf("mov%s %c%d, %c%d", dill_type_names[typ], + OPND(insn->opnds.a2.dest), OPND(insn->opnds.a2.src)); break; } - case iclass_reti: - { - int typ = insn->insn_code & 0xf; - printf("ret%si %zu", - dill_type_names[typ], insn->opnds.a3i.u.imm); + case iclass_reti: { + int typ = insn->insn_code & 0xf; + printf("ret%si %zu", dill_type_names[typ], insn->opnds.a3i.u.imm); break; } - case iclass_ret: - { - int typ = insn->insn_code & 0xf; - printf("ret%s %c%d", - dill_type_names[typ], OPND(insn->opnds.a1.src)); + case iclass_ret: { + int typ = insn->insn_code & 0xf; + printf("ret%s %c%d", dill_type_names[typ], OPND(insn->opnds.a1.src)); break; } - case iclass_branch: - { - int br_op = insn->insn_code; - struct branch_table *t = &c->p->branch_table; - printf("b%s %c%d, %c%d, L%d", branch_op_names[br_op], - OPND(insn->opnds.br.src1), - OPND(insn->opnds.br.src2), insn->opnds.br.label); - if (t->label_name[insn->opnds.br.label] != NULL) { - printf("<%s>", t->label_name[insn->opnds.br.label]); - } + case iclass_branch: { + int br_op = insn->insn_code; + struct branch_table* t = &c->p->branch_table; + printf("b%s %c%d, %c%d, L%d", branch_op_names[br_op], + OPND(insn->opnds.br.src1), OPND(insn->opnds.br.src2), + insn->opnds.br.label); + if (t->label_name[insn->opnds.br.label] != NULL) { + printf("<%s>", t->label_name[insn->opnds.br.label]); + } break; } - case iclass_compare: - { - int c_op = insn->insn_code; - printf("%s %c%d, %c%d, %c%d", compare_op_names[c_op], - OPND(insn->opnds.a3.dest), - OPND(insn->opnds.a3.src1), - OPND(insn->opnds.a3.src2)); + case iclass_compare: { + int c_op = insn->insn_code; + printf("%s %c%d, %c%d, %c%d", compare_op_names[c_op], + OPND(insn->opnds.a3.dest), OPND(insn->opnds.a3.src1), + OPND(insn->opnds.a3.src2)); break; } - case iclass_branchi: - { - int br_op = insn->insn_code; - struct branch_table *t = &c->p->branch_table; - printf("b%si %c%d, %p, L%d", branch_op_names[br_op], - OPND(insn->opnds.bri.src), - (void*)insn->opnds.bri.imm_l, insn->opnds.bri.label); - if (t->label_name[insn->opnds.bri.label] != NULL) { - printf("<%s>", t->label_name[insn->opnds.bri.label]); - } + case iclass_branchi: { + int br_op = insn->insn_code; + struct branch_table* t = &c->p->branch_table; + printf("b%si %c%d, %p, L%d", branch_op_names[br_op], + OPND(insn->opnds.bri.src), (void*)insn->opnds.bri.imm_l, + insn->opnds.bri.label); + if (t->label_name[insn->opnds.bri.label] != NULL) { + printf("<%s>", t->label_name[insn->opnds.bri.label]); + } break; } - case iclass_jump_to_label: - { - struct branch_table *t = &c->p->branch_table; + case iclass_jump_to_label: { + struct branch_table* t = &c->p->branch_table; printf("br L%d", insn->opnds.br.label); - if (t->label_name[insn->opnds.br.label] != NULL) { - printf("<%s>", t->label_name[insn->opnds.br.label]); - } + if (t->label_name[insn->opnds.br.label] != NULL) { + printf("<%s>", t->label_name[insn->opnds.br.label]); + } break; } - case iclass_mark_label: - { - struct branch_table *t = &c->p->branch_table; + case iclass_mark_label: { + struct branch_table* t = &c->p->branch_table; printf("L%d:", insn->opnds.label.label); - if (t->label_name[insn->opnds.label.label] != NULL) { - printf("<%s>", t->label_name[insn->opnds.label.label]); - } + if (t->label_name[insn->opnds.label.label] != NULL) { + printf("<%s>", t->label_name[insn->opnds.label.label]); + } break; } - case iclass_jump_to_reg: - { + case iclass_jump_to_reg: { printf("jmp %c%d", OPND(insn->opnds.br.src1)); - break; + break; } - case iclass_jump_to_imm: - { + case iclass_jump_to_imm: { printf("jmp 0x%p", insn->opnds.bri.imm_a); break; } - case iclass_special: - { - switch (insn->opnds.spec.type) { - case DILL_NOP: - printf("special NOP"); - break; - case DILL_SEGMENTED_FOLLOWS: - printf("special SEGMENTED %s", - prefix_names[insn->opnds.spec.param]); - break; - } + case iclass_special: { + switch (insn->opnds.spec.type) { + case DILL_NOP: + printf("special NOP"); + break; + case DILL_SEGMENTED_FOLLOWS: + printf("special SEGMENTED %s", + prefix_names[insn->opnds.spec.param]); + break; + } break; } - case iclass_call: - { - int typ = insn->insn_code & 0xf; - int reg = insn->insn_code & 0x10; - if (typ != DILL_V) { - if (reg != 0) { - printf("call%s R%p, %c%d", dill_type_names[typ], - (void*)insn->opnds.calli.imm_l, OPND(insn->opnds.calli.src)); - } else { - const char *call_name = insn->opnds.calli.xfer_name; - if (call_name) { - printf("call%s 0x%p<%s>, %c%d", dill_type_names[typ], - insn->opnds.calli.imm_a, call_name, - OPND(insn->opnds.calli.src)); - } else { - printf("call%s 0x%p, %c%d", dill_type_names[typ], - insn->opnds.calli.imm_a, OPND(insn->opnds.calli.src)); - } - } - } else { - if (reg != 0) { - printf("call%s R%p", dill_type_names[typ], - (void*)insn->opnds.calli.imm_l); - } else { - const char *call_name = insn->opnds.calli.xfer_name; - if (call_name) { - printf("call%s 0x%p<%s>", dill_type_names[typ], - insn->opnds.calli.imm_a, call_name); - } else { - printf("call%s 0x%p", dill_type_names[typ], - insn->opnds.calli.imm_a); - } - } - } + case iclass_call: { + int typ = insn->insn_code & 0xf; + int reg = insn->insn_code & 0x10; + if (typ != DILL_V) { + if (reg != 0) { + printf("call%s R%p, %c%d", dill_type_names[typ], + (void*)insn->opnds.calli.imm_l, + OPND(insn->opnds.calli.src)); + } else { + const char* call_name = insn->opnds.calli.xfer_name; + if (call_name) { + printf("call%s 0x%p<%s>, %c%d", dill_type_names[typ], + insn->opnds.calli.imm_a, call_name, + OPND(insn->opnds.calli.src)); + } else { + printf("call%s 0x%p, %c%d", dill_type_names[typ], + insn->opnds.calli.imm_a, + OPND(insn->opnds.calli.src)); + } + } + } else { + if (reg != 0) { + printf("call%s R%p", dill_type_names[typ], + (void*)insn->opnds.calli.imm_l); + } else { + const char* call_name = insn->opnds.calli.xfer_name; + if (call_name) { + printf("call%s 0x%p<%s>", dill_type_names[typ], + insn->opnds.calli.imm_a, call_name); + } else { + printf("call%s 0x%p", dill_type_names[typ], + insn->opnds.calli.imm_a); + } + } + } break; } - case iclass_push: - { - int typ = insn->insn_code & 0xf; - if ((short)insn->opnds.a1.src < 0) { - if ((short)insn->opnds.a1.src == -1) { - printf("pushinit"); - } else { - int non_var_arg = -((short)insn->opnds.a1.src) - 2; - printf("pushinit varidiac, %d nonvar args", non_var_arg); - } - } else { - printf("push%s %c%d", dill_type_names[typ], - OPND(insn->opnds.a1.src)); - } + case iclass_push: { + int typ = insn->insn_code & 0xf; + if ((short)insn->opnds.a1.src < 0) { + if ((short)insn->opnds.a1.src == -1) { + printf("pushinit"); + } else { + int non_var_arg = -((short)insn->opnds.a1.src) - 2; + printf("pushinit varidiac, %d nonvar args", non_var_arg); + } + } else { + printf("push%s %c%d", dill_type_names[typ], + OPND(insn->opnds.a1.src)); + } break; } - case iclass_pushi: - { - int typ = insn->insn_code & 0xf; - if (typ == DILL_P) { - printf("push%si 0x%p", dill_type_names[typ], insn->opnds.a3i.u.imm_a); - } else { - printf("push%si 0x%zx", dill_type_names[typ], insn->opnds.a3i.u.imm); - } + case iclass_pushi: { + int typ = insn->insn_code & 0xf; + if (typ == DILL_P) { + printf("push%si 0x%p", dill_type_names[typ], + insn->opnds.a3i.u.imm_a); + } else { + printf("push%si 0x%zx", dill_type_names[typ], + insn->opnds.a3i.u.imm); + } break; } - case iclass_pushf: - { - int typ = insn->insn_code; + case iclass_pushf: { + int typ = insn->insn_code; printf("push%si %g", dill_type_names[typ], insn->opnds.sf.imm); break; } case iclass_nop: - printf("nop"); + printf("nop"); } return sizeof(*insn); } static int -insn_same_except_dest(virtual_insn *i, virtual_insn *j) +insn_same_except_dest(virtual_insn* i, virtual_insn* j) { int icode = i->insn_code; int jcode = j->insn_code; - - if (i->class_code != j->class_code) return 0; - switch(i->class_code) { + + if (i->class_code != j->class_code) + return 0; + switch (i->class_code) { case iclass_arith3: case iclass_compare: - return ((icode == jcode) && (i->opnds.a3.src1 == j->opnds.a3.src1) && - (i->opnds.a3.src2 == j->opnds.a3.src2)); + return ((icode == jcode) && (i->opnds.a3.src1 == j->opnds.a3.src1) && + (i->opnds.a3.src2 == j->opnds.a3.src2)); case iclass_arith3i: - return ((icode == jcode) && (i->opnds.a3i.src == j->opnds.a3i.src) && - (i->opnds.a3i.u.imm == j->opnds.a3i.u.imm)); + return ((icode == jcode) && (i->opnds.a3i.src == j->opnds.a3i.src) && + (i->opnds.a3i.u.imm == j->opnds.a3i.u.imm)); case iclass_arith2: - return ((icode == jcode) && (i->opnds.a2.src == j->opnds.a2.src)); + return ((icode == jcode) && (i->opnds.a2.src == j->opnds.a2.src)); case iclass_convert: - return ((icode == jcode) && (i->opnds.a2.src == j->opnds.a2.src)); + return ((icode == jcode) && (i->opnds.a2.src == j->opnds.a2.src)); case iclass_loadstore: - return ((icode == jcode) && (i->opnds.a3.src1 == j->opnds.a3.src1) && - (i->opnds.a3.src2 == j->opnds.a3.src2)); + return ((icode == jcode) && (i->opnds.a3.src1 == j->opnds.a3.src1) && + (i->opnds.a3.src2 == j->opnds.a3.src2)); case iclass_loadstorei: - return ((icode == jcode) && (i->opnds.a3i.src == j->opnds.a3i.src) && - (i->opnds.a3i.u.imm == j->opnds.a3i.u.imm)); + return ((icode == jcode) && (i->opnds.a3i.src == j->opnds.a3i.src) && + (i->opnds.a3i.u.imm == j->opnds.a3i.u.imm)); case iclass_lea: - return ((i->opnds.a3i.src == j->opnds.a3i.src) && - (i->opnds.a3i.u.imm == j->opnds.a3i.u.imm)); + return ((i->opnds.a3i.src == j->opnds.a3i.src) && + (i->opnds.a3i.u.imm == j->opnds.a3i.u.imm)); case iclass_set: case iclass_setf: - return 0; + return 0; case iclass_mov: - return ((icode == jcode) && (i->opnds.a2.src == j->opnds.a2.src)); + return ((icode == jcode) && (i->opnds.a2.src == j->opnds.a2.src)); case iclass_reti: case iclass_ret: case iclass_branch: @@ -346,48 +312,48 @@ insn_same_except_dest(virtual_insn *i, virtual_insn *j) case iclass_pushf: case iclass_nop: case iclass_mark_label: - break; + break; } return 0; } static void -pushpop_inuse_regs(dill_stream c, int pop, virtual_insn *ip) +pushpop_inuse_regs(dill_stream c, int pop, virtual_insn* ip) { int i = 0; /* no actual reg assigns, so only the params are in use */ - for(i=0; ip->c_param_count; i++) { - if (c->p->c_param_args[i].is_register) { - c->j->save_restore(c, pop, c->p->c_param_args[i].type, - c->p->c_param_args[i].in_reg); - } + for (i = 0; i < c->p->c_param_count; i++) { + if (c->p->c_param_args[i].is_register) { + c->j->save_restore(c, pop, c->p->c_param_args[i].type, + c->p->c_param_args[i].in_reg); + } } } - -#define end_bb(b, lab, f) \ -{\ -bb->end_branch_label = lab; \ -bb->fall_through = f;\ -bb->end = i - 1;\ -vmi->bbcount++;\ -vmi->bblist = realloc(vmi->bblist, sizeof(struct basic_block) * (vmi->bbcount +1));\ -bb = &vmi->bblist[vmi->bbcount];\ -bb->start = i;\ -bb->end = -1;\ -bb->label = -1;\ -bb->end_branch_label = -1;\ -bb->fall_through = 0; \ -bb->is_loop_start = 0; \ -bb->is_loop_end = 0; \ -bb->regs_used = new_bit_vec(c->p->vreg_count);\ -bb->regs_defined = new_bit_vec(c->p->vreg_count);\ -} +#define end_bb(b, lab, f) \ + { \ + bb->end_branch_label = lab; \ + bb->fall_through = f; \ + bb->end = i - 1; \ + vmi->bbcount++; \ + vmi->bblist = realloc( \ + vmi->bblist, sizeof(struct basic_block) * (vmi->bbcount + 1)); \ + bb = &vmi->bblist[vmi->bbcount]; \ + bb->start = i; \ + bb->end = -1; \ + bb->label = -1; \ + bb->end_branch_label = -1; \ + bb->fall_through = 0; \ + bb->is_loop_start = 0; \ + bb->is_loop_end = 0; \ + bb->regs_used = new_bit_vec(c->p->vreg_count); \ + bb->regs_defined = new_bit_vec(c->p->vreg_count); \ + } static bit_vec new_bit_vec(int max) { - int len = (max +7) >> 3; + int len = (max + 7) >> 3; bit_vec ret = malloc(sizeof(struct bitv) + len - 2); ret->len = len; memset(&ret->vec[0], 0, len); @@ -430,14 +396,15 @@ static void dump_reg_vec(bit_vec v) { int i; - if (v == NULL) return; - for (i=0; i < v->len; i++) { - int j; - for (j=0; j < 7; j++) { - if ((v->vec[i] & (1 << j)) != 0) { - printf(" R%d", i * 8 + j + 100); - } - } + if (v == NULL) + return; + for (i = 0; i < v->len; i++) { + int j; + for (j = 0; j < 7; j++) { + if ((v->vec[i] & (1 << j)) != 0) { + printf(" R%d", i * 8 + j + 100); + } + } } } @@ -445,8 +412,8 @@ static int has_single_def_use(dill_stream c, int vreg) { if (vreg >= 100) { - return ((c->p->vregs[vreg-100].use_info.use_count == 1) && - (c->p->vregs[vreg-100].use_info.def_count == 1)); + return ((c->p->vregs[vreg - 100].use_info.use_count == 1) && + (c->p->vregs[vreg - 100].use_info.def_count == 1)); } return 0; } @@ -455,20 +422,20 @@ static void set_unused(dill_stream c, basic_block bb, int vreg) { if (vreg >= 100) { - c->p->vregs[vreg-100].use_info.use_count = 0; - c->p->vregs[vreg-100].use_info.def_count = 0; - bit_vec_clear(bb->regs_defined, vreg - 100); - bit_vec_clear(bb->regs_used, vreg - 100); - } + c->p->vregs[vreg - 100].use_info.use_count = 0; + c->p->vregs[vreg - 100].use_info.def_count = 0; + bit_vec_clear(bb->regs_defined, vreg - 100); + bit_vec_clear(bb->regs_used, vreg - 100); + } } static void set_used(dill_stream c, int vreg) { if (vreg >= 100) { - c->p->vregs[vreg-100].use_info.use_count++; + c->p->vregs[vreg - 100].use_info.use_count++; } else { - c->p->c_param_args[vreg].used++; + c->p->c_param_args[vreg].used++; } } @@ -476,67 +443,76 @@ static void set_defined(dill_stream c, int vreg) { if (vreg >= 100) { - c->p->vregs[vreg-100].use_info.def_count++; + c->p->vregs[vreg - 100].use_info.def_count++; } } -static void bb_defines(dill_stream c, basic_block bb, int vreg) +static void +bb_defines(dill_stream c, basic_block bb, int vreg) { if (vreg >= 100) { - /* not param */ - if (!bit_vec_is_set(bb->regs_used, vreg - 100)) { - bit_vec_set(bb->regs_defined, vreg - 100); - } - set_defined(c, vreg); + /* not param */ + if (!bit_vec_is_set(bb->regs_used, vreg - 100)) { + bit_vec_set(bb->regs_defined, vreg - 100); + } + set_defined(c, vreg); } } -static void bb_uses(dill_stream c, basic_block bb, int vreg) +static void +bb_uses(dill_stream c, basic_block bb, int vreg) { if (vreg >= 100) { - /* not param */ - if (!bit_vec_is_set(bb->regs_defined, vreg - 100)) { - bit_vec_set(bb->regs_used, vreg - 100); - } - set_used(c, vreg); + /* not param */ + if (!bit_vec_is_set(bb->regs_defined, vreg - 100)) { + bit_vec_set(bb->regs_used, vreg - 100); + } + set_used(c, vreg); } } static void add_pred(basic_block bb, int pred) { - bb->pred_list = realloc(bb->pred_list, (bb->pred_count+1) * sizeof(int)); + bb->pred_list = realloc(bb->pred_list, (bb->pred_count + 1) * sizeof(int)); bb->pred_list[bb->pred_count] = pred; bb->pred_count++; } static void -dump_bb(dill_stream c, struct basic_block *bb, int i) +dump_bb(dill_stream c, struct basic_block* bb, int i) { - int j; - printf("\nBasic block %d, start %d, end %d, label %d, fall %d, branch_to %d\n", - i, bb->start, bb->end, - bb->label, bb->fall_through, - bb->end_branch_label); - printf(" defines :"); dump_reg_vec(bb->regs_defined); - printf("\n uses :"); dump_reg_vec(bb->regs_used); - printf("\n live_at_end :"); dump_reg_vec(bb->live_at_end); - printf("\n succ :"); - for (j=0; j < bb->succ_count; j++) { - printf(" %d", bb->succ_list[j]); - } - printf("\n preds :"); - for (j=0; j < bb->pred_count; j++) { - printf(" %d", bb->pred_list[j]); - } - if (bb->is_loop_start) printf(" - LOOP_START"); - if (bb->is_loop_end) printf(" - LOOP_END"); + size_t j; + printf( + "\nBasic block %d, start %zd, end %zd, label %d, fall %d, branch_to " + "%d\n", + i, bb->start, bb->end, bb->label, bb->fall_through, + bb->end_branch_label); + printf(" defines :"); + dump_reg_vec(bb->regs_defined); + printf("\n uses :"); + dump_reg_vec(bb->regs_used); + printf("\n live_at_end :"); + dump_reg_vec(bb->live_at_end); + printf("\n succ :"); + for (j = 0; j < bb->succ_count; j++) { + printf(" %d", bb->succ_list[j]); + } + printf("\n preds :"); + for (j = 0; j < bb->pred_count; j++) { + printf(" %d", bb->pred_list[j]); + } + if (bb->is_loop_start) + printf(" - LOOP_START"); + if (bb->is_loop_end) + printf(" - LOOP_END"); printf("\n"); - for (j = bb->start; j <= bb->end; j++) { - printf(" %d - ", j); - virtual_print_insn(c, NULL, ((char *)c->p->virtual.code_base) + - j * sizeof(virtual_insn)); - printf("\n"); + for (j = (size_t)bb->start; j <= (size_t)bb->end; j++) { + printf(" %zd - ", j); + virtual_print_insn( + c, NULL, + ((char*)c->p->virtual.code_base) + j * sizeof(virtual_insn)); + printf("\n"); } } @@ -545,8 +521,8 @@ dump_bbs(dill_stream c) { virtual_mach_info vmi = (virtual_mach_info)c->p->mach_info; int i; - for (i=0; i < vmi->bbcount; i++) { - dump_bb(c, &vmi->bblist[i], i); + for (i = 0; i < vmi->bbcount; i++) { + dump_bb(c, &vmi->bblist[i], i); } } @@ -555,13 +531,14 @@ add_regs(bit_vec dest, bit_vec src) { int change = 0; int i, len = dest->len; - if (len > src->len) i = src->len; - for (i=0; i < len; i++) { - char tmp = (dest->vec[i] | src->vec[i]); - if (tmp != dest->vec[i]) { - change = 1; - dest->vec[i] = tmp; - } + if (len > src->len) + i = src->len; + for (i = 0; i < len; i++) { + char tmp = (dest->vec[i] | src->vec[i]); + if (tmp != dest->vec[i]) { + change = 1; + dest->vec[i] = tmp; + } } return change; } @@ -570,9 +547,10 @@ static void remove_regs(bit_vec dest, bit_vec src) { int i, len = dest->len; - if (len > src->len) i = src->len; - for (i=0; i < len; i++) { - dest->vec[i] = (dest->vec[i] & ~src->vec[i]); + if (len > src->len) + i = src->len; + for (i = 0; i < len; i++) { + dest->vec[i] = (dest->vec[i] & ~src->vec[i]); } } @@ -588,77 +566,77 @@ build_live(dill_stream c) virtual_mach_info vmi = (virtual_mach_info)c->p->mach_info; int i, change = 1; bit_vec live_at_begin = new_bit_vec(c->p->vreg_count); - for (i=0; i < vmi->bbcount; i++) { - basic_block bb = &vmi->bblist[i]; - bb->live_at_end = new_bit_vec(c->p->vreg_count); - } - for (i= 0; i < vmi->bbcount; i++) { - basic_block bb = &vmi->bblist[i]; - int j; - for (j = 0 ; j < bb->pred_count; j++) { - /* foreach predecessor add regs we use to preds live_at_end */ - basic_block pred_bb = &vmi->bblist[bb->pred_list[j]]; - (void) add_regs(pred_bb->live_at_end, bb->regs_used); - } + for (i = 0; i < vmi->bbcount; i++) { + basic_block bb = &vmi->bblist[i]; + bb->live_at_end = new_bit_vec(c->p->vreg_count); + } + for (i = 0; i < vmi->bbcount; i++) { + basic_block bb = &vmi->bblist[i]; + int j; + for (j = 0; j < bb->pred_count; j++) { + /* foreach predecessor add regs we use to preds live_at_end */ + basic_block pred_bb = &vmi->bblist[bb->pred_list[j]]; + (void)add_regs(pred_bb->live_at_end, bb->regs_used); + } } while (change) { - /* go through the bbs until live lists stabilize */ - change = 0; - for (i= 0; i < vmi->bbcount; i++) { - basic_block bb = &vmi->bblist[i]; - int j; - - clear_bit_vec(live_at_begin); - add_regs(live_at_begin, bb->live_at_end); - remove_regs(live_at_begin, bb->regs_defined); - for (j = 0 ; j < bb->pred_count; j++) { - /* - * foreach predecessor add regs live at our beginning - * to preds live_at_end - */ - basic_block pred_bb = &vmi->bblist[bb->pred_list[j]]; - change |= add_regs(pred_bb->live_at_end, live_at_begin); - } - } + /* go through the bbs until live lists stabilize */ + change = 0; + for (i = 0; i < vmi->bbcount; i++) { + basic_block bb = &vmi->bblist[i]; + int j; + + clear_bit_vec(live_at_begin); + add_regs(live_at_begin, bb->live_at_end); + remove_regs(live_at_begin, bb->regs_defined); + for (j = 0; j < bb->pred_count; j++) { + /* + * foreach predecessor add regs live at our beginning + * to preds live_at_end + */ + basic_block pred_bb = &vmi->bblist[bb->pred_list[j]]; + change |= add_regs(pred_bb->live_at_end, live_at_begin); + } + } } free(live_at_begin); } static int -insn_defines(virtual_insn *insn) +insn_defines(virtual_insn* insn) { - switch(insn->class_code) { + switch (insn->class_code) { case iclass_arith3: case iclass_compare: - return insn->opnds.a3.dest; + return insn->opnds.a3.dest; case iclass_arith3i: - return insn->opnds.a3i.dest; + return insn->opnds.a3i.dest; case iclass_arith2: - return insn->opnds.a2.dest; + return insn->opnds.a2.dest; case iclass_convert: - return insn->opnds.a2.dest; + return insn->opnds.a2.dest; case iclass_loadstorei: - if (insn->insn_code & 0x10) { - /* store */ - return -1; - } else { - return insn->opnds.a3i.dest; - } + if (insn->insn_code & 0x10) { + /* store */ + return -1; + } else { + return insn->opnds.a3i.dest; + } case iclass_lea: - return insn->opnds.a3i.dest; + return insn->opnds.a3i.dest; case iclass_loadstore: - if (insn->insn_code & 0x10) { - /* store */ - return -1; - } else { - return insn->opnds.a3.dest; - } + if (insn->insn_code & 0x10) { + /* store */ + return -1; + } else { + return insn->opnds.a3.dest; + } case iclass_set: - return insn->opnds.a3i.dest; + return insn->opnds.a3i.dest; case iclass_setf: - return insn->opnds.sf.dest; + return insn->opnds.sf.dest; case iclass_mov: - return insn->opnds.a2.dest; + return insn->opnds.a2.dest; case iclass_reti: case iclass_ret: case iclass_branch: @@ -667,63 +645,62 @@ insn_defines(virtual_insn *insn) case iclass_jump_to_reg: case iclass_jump_to_imm: case iclass_special: - return -1; - case iclass_call: - { - int typ = insn->insn_code & 0xf; - /* put the return register definition in the next bb */ - if (typ != DILL_V) { - return insn->opnds.calli.src; - } - return -1; + return -1; + case iclass_call: { + int typ = insn->insn_code & 0xf; + /* put the return register definition in the next bb */ + if (typ != DILL_V) { + return insn->opnds.calli.src; + } + return -1; } case iclass_push: case iclass_pushi: case iclass_pushf: case iclass_nop: case iclass_mark_label: - return -1; + return -1; default: - assert(0); + assert(0); } return -1; } static int -insn_define_test(virtual_insn *insn, int vreg) +insn_define_test(virtual_insn* insn, int vreg) { - switch(insn->class_code) { + switch (insn->class_code) { case iclass_arith3: case iclass_compare: - return insn->opnds.a3.dest == vreg; + return insn->opnds.a3.dest == vreg; case iclass_arith3i: - return insn->opnds.a3i.dest == vreg; + return insn->opnds.a3i.dest == vreg; case iclass_arith2: - return insn->opnds.a2.dest == vreg; + return insn->opnds.a2.dest == vreg; case iclass_convert: - return insn->opnds.a2.dest == vreg; + return insn->opnds.a2.dest == vreg; case iclass_lea: - return insn->opnds.a3i.dest == vreg; + return insn->opnds.a3i.dest == vreg; case iclass_loadstorei: - if (insn->insn_code & 0x10) { - /* store */ - return 0; - } else { - return insn->opnds.a3i.dest == vreg; - } + if (insn->insn_code & 0x10) { + /* store */ + return 0; + } else { + return insn->opnds.a3i.dest == vreg; + } case iclass_loadstore: - if (insn->insn_code & 0x10) { - /* store */ - return 0; - } else { - return insn->opnds.a3.dest == vreg; - } + if (insn->insn_code & 0x10) { + /* store */ + return 0; + } else { + return insn->opnds.a3.dest == vreg; + } case iclass_set: - return insn->opnds.a3i.dest == vreg; + return insn->opnds.a3i.dest == vreg; case iclass_setf: - return insn->opnds.sf.dest == vreg; + return insn->opnds.sf.dest == vreg; case iclass_mov: - return insn->opnds.a2.dest == vreg; + return insn->opnds.a2.dest == vreg; case iclass_reti: case iclass_ret: case iclass_branch: @@ -732,296 +709,349 @@ insn_define_test(virtual_insn *insn, int vreg) case iclass_jump_to_reg: case iclass_jump_to_imm: case iclass_special: - return 0; - case iclass_call: - { - int typ = insn->insn_code & 0xf; - /* put the return register definition in the next bb */ - if (typ != DILL_V) { - return insn->opnds.calli.src == vreg; - } - return 0; + return 0; + case iclass_call: { + int typ = insn->insn_code & 0xf; + /* put the return register definition in the next bb */ + if (typ != DILL_V) { + return insn->opnds.calli.src == vreg; + } + return 0; } case iclass_push: case iclass_pushi: case iclass_pushf: case iclass_nop: case iclass_mark_label: - return 0; + return 0; default: - assert(0); + assert(0); } return 0; } - static void -insn_uses(virtual_insn *insn, int *used) +insn_uses(virtual_insn* insn, int* used) { used[0] = -1; used[1] = -1; used[2] = -1; - switch(insn->class_code) { + switch (insn->class_code) { case iclass_arith3: case iclass_compare: - used[0] = insn->opnds.a3.src1; - used[1] = insn->opnds.a3.src2; - break; + used[0] = insn->opnds.a3.src1; + used[1] = insn->opnds.a3.src2; + break; case iclass_arith3i: - used[0] = insn->opnds.a3i.src; - break; + used[0] = insn->opnds.a3i.src; + break; case iclass_arith2: - used[0] = insn->opnds.a2.src; - break; + used[0] = insn->opnds.a2.src; + break; case iclass_convert: - used[0] = insn->opnds.a2.src; - break; + used[0] = insn->opnds.a2.src; + break; case iclass_lea: - used[0] = insn->opnds.a3i.src; - break; + used[0] = insn->opnds.a3i.src; + break; case iclass_loadstorei: - used[0] = insn->opnds.a3i.src; - if (insn->insn_code & 0x10) { - /* store */ - used[1] = insn->opnds.a3i.dest; - } - break; + used[0] = insn->opnds.a3i.src; + if (insn->insn_code & 0x10) { + /* store */ + used[1] = insn->opnds.a3i.dest; + } + break; case iclass_loadstore: - used[0] = insn->opnds.a3.src1; - used[1] = insn->opnds.a3.src2; - if (insn->insn_code & 0x10) { - /* store */ - used[2] = insn->opnds.a3.dest; - } - break; + used[0] = insn->opnds.a3.src1; + used[1] = insn->opnds.a3.src2; + if (insn->insn_code & 0x10) { + /* store */ + used[2] = insn->opnds.a3.dest; + } + break; case iclass_set: - break; + break; case iclass_setf: - break; + break; case iclass_mov: - used[0] = insn->opnds.a2.src; - break; + used[0] = insn->opnds.a2.src; + break; case iclass_reti: - break; + break; case iclass_ret: - used[0] = insn->opnds.a1.src; - break; + used[0] = insn->opnds.a1.src; + break; case iclass_branch: - used[0] = insn->opnds.br.src1; - used[1] = insn->opnds.br.src2; - break; + used[0] = insn->opnds.br.src1; + used[1] = insn->opnds.br.src2; + break; case iclass_branchi: - used[0] = insn->opnds.bri.src; - break; + used[0] = insn->opnds.bri.src; + break; case iclass_jump_to_label: - break; + break; case iclass_jump_to_reg: - used[0] = insn->opnds.bri.src; - break; + used[0] = insn->opnds.bri.src; + break; case iclass_jump_to_imm: case iclass_special: - break; + break; case iclass_call: { - int reg = insn->insn_code & 0x10; - if (reg != 0) { - long imm = (long) insn->opnds.calli.imm_l; - int src1_vreg = imm; - used[0] = src1_vreg; - } - break; + int reg = insn->insn_code & 0x10; + if (reg != 0) { + size_t imm = (size_t)insn->opnds.calli.imm_l; + int src1_vreg = (int)imm; + used[0] = src1_vreg; + } + break; } case iclass_push: - if ((short)insn->opnds.a1.src >= 0) - used[0] = insn->opnds.a1.src; - break; + if ((short)insn->opnds.a1.src >= 0) + used[0] = insn->opnds.a1.src; + break; case iclass_pushi: - break; + break; case iclass_pushf: - break; + break; case iclass_nop: - break; + break; } } static void -replace_insn_src(virtual_insn *insn, int replace_vreg, int new_vreg) +replace_insn_src(virtual_insn* insn, int replace_vreg, int new_vreg) { - switch(insn->class_code) { + switch (insn->class_code) { case iclass_arith3: case iclass_compare: - if (replace_vreg == insn->opnds.a3.src1) { - insn->opnds.a3.src1 = new_vreg; return;}; - if (replace_vreg == insn->opnds.a3.src2) { - insn->opnds.a3.src2 = new_vreg; return;}; - break; + if (replace_vreg == insn->opnds.a3.src1) { + insn->opnds.a3.src1 = new_vreg; + return; + }; + if (replace_vreg == insn->opnds.a3.src2) { + insn->opnds.a3.src2 = new_vreg; + return; + }; + break; case iclass_arith3i: - if (replace_vreg == insn->opnds.a3i.src) { - insn->opnds.a3i.src = new_vreg; return;}; - break; + if (replace_vreg == insn->opnds.a3i.src) { + insn->opnds.a3i.src = new_vreg; + return; + }; + break; case iclass_arith2: - if (replace_vreg == insn->opnds.a2.src) { - insn->opnds.a2.src = new_vreg; return;}; - break; + if (replace_vreg == insn->opnds.a2.src) { + insn->opnds.a2.src = new_vreg; + return; + }; + break; case iclass_convert: - if (replace_vreg == insn->opnds.a2.src) { - insn->opnds.a2.src = new_vreg; return;}; - break; + if (replace_vreg == insn->opnds.a2.src) { + insn->opnds.a2.src = new_vreg; + return; + }; + break; case iclass_lea: - if (replace_vreg == insn->opnds.a3i.src) { - insn->opnds.a3i.src = new_vreg; return;}; - break; + if (replace_vreg == insn->opnds.a3i.src) { + insn->opnds.a3i.src = new_vreg; + return; + }; + break; case iclass_loadstorei: - if (replace_vreg == insn->opnds.a3i.src) { - insn->opnds.a3i.src = new_vreg; return;}; - if (insn->insn_code & 0x10) { - /* store */ - if (replace_vreg == insn->opnds.a3i.dest) { - insn->opnds.a3i.dest = new_vreg; return;}; - } - break; + if (replace_vreg == insn->opnds.a3i.src) { + insn->opnds.a3i.src = new_vreg; + return; + }; + if (insn->insn_code & 0x10) { + /* store */ + if (replace_vreg == insn->opnds.a3i.dest) { + insn->opnds.a3i.dest = new_vreg; + return; + }; + } + break; case iclass_loadstore: - if (replace_vreg == insn->opnds.a3.src1) { - insn->opnds.a3.src1 = new_vreg; return;}; - if (replace_vreg == insn->opnds.a3.src2) { - insn->opnds.a3.src2 = new_vreg; return;}; - if (insn->insn_code & 0x10) { - /* store */ - if (replace_vreg == insn->opnds.a3.dest) { - insn->opnds.a3.dest = new_vreg; return;}; - } - break; + if (replace_vreg == insn->opnds.a3.src1) { + insn->opnds.a3.src1 = new_vreg; + return; + }; + if (replace_vreg == insn->opnds.a3.src2) { + insn->opnds.a3.src2 = new_vreg; + return; + }; + if (insn->insn_code & 0x10) { + /* store */ + if (replace_vreg == insn->opnds.a3.dest) { + insn->opnds.a3.dest = new_vreg; + return; + }; + } + break; case iclass_set: - break; + break; case iclass_setf: - break; + break; case iclass_mov: - if (replace_vreg == insn->opnds.a2.src) { - insn->opnds.a2.src = new_vreg; return;}; - break; + if (replace_vreg == insn->opnds.a2.src) { + insn->opnds.a2.src = new_vreg; + return; + }; + break; case iclass_reti: - break; + break; case iclass_ret: - if (replace_vreg == insn->opnds.a1.src) { - insn->opnds.a1.src = new_vreg; return;}; - break; + if (replace_vreg == insn->opnds.a1.src) { + insn->opnds.a1.src = new_vreg; + return; + }; + break; case iclass_branch: - if (replace_vreg == insn->opnds.br.src1) { - insn->opnds.br.src1 = new_vreg; return;}; - if (replace_vreg == insn->opnds.br.src2) { - insn->opnds.br.src2 = new_vreg; return;}; - break; + if (replace_vreg == insn->opnds.br.src1) { + insn->opnds.br.src1 = new_vreg; + return; + }; + if (replace_vreg == insn->opnds.br.src2) { + insn->opnds.br.src2 = new_vreg; + return; + }; + break; case iclass_branchi: - if (replace_vreg == insn->opnds.bri.src) { - insn->opnds.bri.src = new_vreg; return;}; - break; + if (replace_vreg == insn->opnds.bri.src) { + insn->opnds.bri.src = new_vreg; + return; + }; + break; case iclass_jump_to_label: - break; + break; case iclass_jump_to_reg: - if (replace_vreg == insn->opnds.bri.src) { - insn->opnds.bri.src = new_vreg; return;}; - break; + if (replace_vreg == insn->opnds.bri.src) { + insn->opnds.bri.src = new_vreg; + return; + }; + break; case iclass_jump_to_imm: case iclass_special: - break; + break; case iclass_call: - break; + break; case iclass_push: - if ((short)insn->opnds.a1.src >= 0) - if (replace_vreg == insn->opnds.a1.src) { - insn->opnds.a1.src = new_vreg; return;}; - break; + if ((short)insn->opnds.a1.src >= 0) + if (replace_vreg == insn->opnds.a1.src) { + insn->opnds.a1.src = new_vreg; + return; + }; + break; case iclass_pushi: - break; + break; case iclass_pushf: - break; + break; case iclass_nop: - break; + break; } assert(0); } static int -insn_use_test(virtual_insn *insn, int vreg) +insn_use_test(virtual_insn* insn, int vreg) { - switch(insn->class_code) { + switch (insn->class_code) { case iclass_arith3: case iclass_compare: - if (vreg == insn->opnds.a3.src1) return 1; - if (vreg == insn->opnds.a3.src2) return 1; - break; + if (vreg == insn->opnds.a3.src1) + return 1; + if (vreg == insn->opnds.a3.src2) + return 1; + break; case iclass_arith3i: - if (vreg == insn->opnds.a3i.src) return 1; - break; + if (vreg == insn->opnds.a3i.src) + return 1; + break; case iclass_arith2: - if (vreg == insn->opnds.a2.src) return 1; - break; + if (vreg == insn->opnds.a2.src) + return 1; + break; case iclass_convert: - if (vreg == insn->opnds.a2.src) return 1; - break; + if (vreg == insn->opnds.a2.src) + return 1; + break; case iclass_lea: - if (vreg == insn->opnds.a3i.src) return 1; - break; + if (vreg == insn->opnds.a3i.src) + return 1; + break; case iclass_loadstorei: - if (vreg == insn->opnds.a3i.src) return 1; - if (insn->insn_code & 0x10) { - /* store */ - if (vreg == insn->opnds.a3i.dest) return 1; - } - break; + if (vreg == insn->opnds.a3i.src) + return 1; + if (insn->insn_code & 0x10) { + /* store */ + if (vreg == insn->opnds.a3i.dest) + return 1; + } + break; case iclass_loadstore: - if (vreg == insn->opnds.a3.src1) return 1; - if (vreg == insn->opnds.a3.src2) return 1; - if (insn->insn_code & 0x10) { - /* store */ - if (vreg == insn->opnds.a3.dest) return 1; - } - break; + if (vreg == insn->opnds.a3.src1) + return 1; + if (vreg == insn->opnds.a3.src2) + return 1; + if (insn->insn_code & 0x10) { + /* store */ + if (vreg == insn->opnds.a3.dest) + return 1; + } + break; case iclass_set: - break; + break; case iclass_setf: - break; + break; case iclass_mov: - if (vreg == insn->opnds.a2.src) return 1; - break; + if (vreg == insn->opnds.a2.src) + return 1; + break; case iclass_reti: - break; + break; case iclass_ret: - if (vreg == insn->opnds.a1.src) return 1; - break; + if (vreg == insn->opnds.a1.src) + return 1; + break; case iclass_branch: - if (vreg == insn->opnds.br.src1) return 1; - if (vreg == insn->opnds.br.src2) return 1; - break; + if (vreg == insn->opnds.br.src1) + return 1; + if (vreg == insn->opnds.br.src2) + return 1; + break; case iclass_branchi: - if (vreg == insn->opnds.bri.src) return 1; - break; + if (vreg == insn->opnds.bri.src) + return 1; + break; case iclass_jump_to_label: - break; + break; case iclass_jump_to_reg: - if (vreg == insn->opnds.bri.src) return 1; - break; + if (vreg == insn->opnds.bri.src) + return 1; + break; case iclass_jump_to_imm: case iclass_special: - break; - case iclass_call:{ - int reg = insn->insn_code & 0x10; - if (reg != 0) { - long imm = (long) insn->opnds.calli.imm_l; - int src1_vreg = imm; - if (vreg == src1_vreg) return 1; - } - break; + break; + case iclass_call: { + int reg = insn->insn_code & 0x10; + if (reg != 0) { + size_t imm = (size_t)insn->opnds.calli.imm_l; + int src1_vreg = (int)imm; + if (vreg == src1_vreg) + return 1; + } + break; } case iclass_push: - if ((short)insn->opnds.a1.src >= 0) - if (vreg == insn->opnds.a1.src) return 1; - break; + if ((short)insn->opnds.a1.src >= 0) + if (vreg == insn->opnds.a1.src) + return 1; + break; case iclass_pushi: - break; + break; case iclass_pushf: - break; + break; case iclass_nop: - break; + break; } return 0; } @@ -1030,149 +1060,152 @@ static void free_bbs(virtual_mach_info vmi) { int i; - for (i=0 ; i < vmi->bbcount; i++) { - basic_block bb = &vmi->bblist[i]; - if (bb->pred_list) free(bb->pred_list); - if (bb->succ_list) free(bb->succ_list); - free(bb->regs_used); - free(bb->regs_defined); - free(bb->live_at_end); - if (bb->reg_assigns) free(bb->reg_assigns); - } - if (vmi->bblist) free(vmi->bblist); + for (i = 0; i < vmi->bbcount; i++) { + basic_block bb = &vmi->bblist[i]; + if (bb->pred_list) + free(bb->pred_list); + if (bb->succ_list) + free(bb->succ_list); + free(bb->regs_used); + free(bb->regs_defined); + free(bb->live_at_end); + if (bb->reg_assigns) + free(bb->reg_assigns); + } + if (vmi->bblist) + free(vmi->bblist); vmi->bblist = NULL; vmi->bbcount = 0; } static void -build_bb_body(dill_stream c, virtual_insn *insn, int i, virtual_insn *insns) +build_bb_body(dill_stream c, virtual_insn* insn, int i, virtual_insn* insns) { virtual_mach_info vmi = (virtual_mach_info)c->p->mach_info; - basic_block bb = &vmi->bblist[vmi->bbcount]; \ - struct branch_table *t = &c->p->branch_table; + basic_block bb = &vmi->bblist[vmi->bbcount]; + struct branch_table* t = &c->p->branch_table; int j; - switch(insn->class_code) { + switch (insn->class_code) { case iclass_arith3: case iclass_compare: - bb_uses(c, bb, insn->opnds.a3.src1); - bb_uses(c, bb, insn->opnds.a3.src2); - bb_defines(c, bb, insn->opnds.a3.dest); - break; + bb_uses(c, bb, insn->opnds.a3.src1); + bb_uses(c, bb, insn->opnds.a3.src2); + bb_defines(c, bb, insn->opnds.a3.dest); + break; case iclass_arith3i: - bb_uses(c, bb, insn->opnds.a3i.src); - bb_defines(c, bb, insn->opnds.a3i.dest); - break; + bb_uses(c, bb, insn->opnds.a3i.src); + bb_defines(c, bb, insn->opnds.a3i.dest); + break; case iclass_arith2: - bb_uses(c, bb, insn->opnds.a2.src); - bb_defines(c, bb, insn->opnds.a2.dest); - break; + bb_uses(c, bb, insn->opnds.a2.src); + bb_defines(c, bb, insn->opnds.a2.dest); + break; case iclass_convert: - bb_uses(c, bb, insn->opnds.a2.src); - bb_defines(c, bb, insn->opnds.a2.dest); - break; + bb_uses(c, bb, insn->opnds.a2.src); + bb_defines(c, bb, insn->opnds.a2.dest); + break; case iclass_lea: - bb_uses(c, bb, insn->opnds.a3i.src); - bb_defines(c, bb, insn->opnds.a3i.dest); - break; + bb_uses(c, bb, insn->opnds.a3i.src); + bb_defines(c, bb, insn->opnds.a3i.dest); + break; case iclass_loadstorei: - bb_uses(c, bb, insn->opnds.a3i.src); - if (insn->insn_code & 0x10) { - /* store */ - bb_uses(c, bb, insn->opnds.a3i.dest); - } else { - bb_defines(c, bb, insn->opnds.a3i.dest); - } - break; + bb_uses(c, bb, insn->opnds.a3i.src); + if (insn->insn_code & 0x10) { + /* store */ + bb_uses(c, bb, insn->opnds.a3i.dest); + } else { + bb_defines(c, bb, insn->opnds.a3i.dest); + } + break; case iclass_loadstore: - bb_uses(c, bb, insn->opnds.a3.src1); - bb_uses(c, bb, insn->opnds.a3.src2); - if (insn->insn_code & 0x10) { - /* store */ - bb_uses(c, bb, insn->opnds.a3.dest); - } else { - bb_defines(c, bb, insn->opnds.a3.dest); - } - break; + bb_uses(c, bb, insn->opnds.a3.src1); + bb_uses(c, bb, insn->opnds.a3.src2); + if (insn->insn_code & 0x10) { + /* store */ + bb_uses(c, bb, insn->opnds.a3.dest); + } else { + bb_defines(c, bb, insn->opnds.a3.dest); + } + break; case iclass_set: - bb_defines(c, bb, insn->opnds.a3i.dest); - break; + bb_defines(c, bb, insn->opnds.a3i.dest); + break; case iclass_setf: - bb_defines(c, bb, insn->opnds.sf.dest); - break; + bb_defines(c, bb, insn->opnds.sf.dest); + break; case iclass_mov: - bb_uses(c, bb, insn->opnds.a2.src); - bb_defines(c, bb, insn->opnds.a2.dest); - break; + bb_uses(c, bb, insn->opnds.a2.src); + bb_defines(c, bb, insn->opnds.a2.dest); + break; case iclass_reti: - break; + break; case iclass_ret: - bb_uses(c, bb, insn->opnds.a1.src); - break; + bb_uses(c, bb, insn->opnds.a1.src); + break; case iclass_branch: - bb_uses(c, bb, insn->opnds.br.src1); - bb_uses(c, bb, insn->opnds.br.src2); - end_bb(bb, insn->opnds.br.label, 1); - break; + bb_uses(c, bb, insn->opnds.br.src1); + bb_uses(c, bb, insn->opnds.br.src2); + end_bb(bb, insn->opnds.br.label, 1); + break; case iclass_branchi: - bb_uses(c, bb, insn->opnds.bri.src); - end_bb(bb, insn->opnds.bri.label, 1); - break; + bb_uses(c, bb, insn->opnds.bri.src); + end_bb(bb, insn->opnds.bri.label, 1); + break; case iclass_jump_to_label: - end_bb(bb, insn->opnds.br.label, 0); - break; + end_bb(bb, insn->opnds.br.label, 0); + break; case iclass_jump_to_reg: - bb_uses(c, bb, insn->opnds.br.src1); - end_bb(bb, -1, 0); - break; + bb_uses(c, bb, insn->opnds.br.src1); + end_bb(bb, -1, 0); + break; case iclass_jump_to_imm: - end_bb(bb, -1, 0); - break; - case iclass_call: - { - int typ = insn->insn_code & 0xf; - end_bb(bb, -1, 1); - /* put the return register definition in the next bb */ - if (typ != DILL_V) { - bb_defines(c, bb, insn->opnds.calli.src); - } - break; + end_bb(bb, -1, 0); + break; + case iclass_call: { + int typ = insn->insn_code & 0xf; + end_bb(bb, -1, 1); + /* put the return register definition in the next bb */ + if (typ != DILL_V) { + bb_defines(c, bb, insn->opnds.calli.src); + } + break; } case iclass_push: - if ((short)insn->opnds.a1.src >= 0) - bb_uses(c, bb, insn->opnds.a1.src); - break; + if ((short)insn->opnds.a1.src >= 0) + bb_uses(c, bb, insn->opnds.a1.src); + break; case iclass_special: - break; + break; case iclass_pushi: - break; + break; case iclass_pushf: - break; + break; case iclass_nop: case iclass_mark_label: - break; - } - for (j=0; j < t->next_label; j++) { - if ((unsigned)t->label_locs[j] == - ((char*)insn - (char*)insns) + sizeof(virtual_insn)) { - int fall_through = 1; - switch (insns[i-1].class_code) { - case iclass_ret: - case iclass_reti: - fall_through = 0; - default: - break; - } - if (bb->start != i) { - end_bb(bb, -1, fall_through); - } - bb->label = j; - } + break; + } + for (j = 0; j < t->next_label; j++) { + if ((unsigned)t->label_locs[j] == + ((char*)insn - (char*)insns) + sizeof(virtual_insn)) { + int fall_through = 1; + switch (insns[i - 1].class_code) { + case iclass_ret: + case iclass_reti: + fall_through = 0; + default: + break; + } + if (bb->start != i) { + end_bb(bb, -1, fall_through); + } + bb->label = j; + } } } static void -build_bbs(dill_stream c, void *vinsns, void *prefix_begin, void *code_end) +build_bbs(dill_stream c, void* vinsns, void* prefix_begin, void* code_end) { virtual_mach_info vmi = (virtual_mach_info)c->p->mach_info; basic_block bb; @@ -1192,57 +1225,56 @@ build_bbs(dill_stream c, void *vinsns, void *prefix_begin, void *code_end) bb->is_loop_start = 0; bb->is_loop_end = 0; if (prefix_begin < code_end) { - i = ((char*)prefix_begin - (char*)insns)/sizeof(virtual_insn); - bb->start = i; - while((insn = &insns[i++]) < (virtual_insn *)code_end) { - build_bb_body(c, insn, i, insns); - } - bb = &vmi->bblist[vmi->bbcount]; - i -= 1; - end_bb(bb, -1, 1); + i = ((char*)prefix_begin - (char*)insns) / sizeof(virtual_insn); + bb->start = i; + while ((insn = &insns[i++]) < (virtual_insn*)code_end) { + build_bb_body(c, insn, (int)i, insns); + } + bb = &vmi->bblist[vmi->bbcount]; + i -= 1; + end_bb(bb, -1, 1); } i = 0; bb->start = i; - while((insn = &insns[i++]) < (virtual_insn *)prefix_begin) { - build_bb_body(c, insn, i, insns); + while ((insn = &insns[i++]) < (virtual_insn*)prefix_begin) { + build_bb_body(c, insn, (int)i, insns); } bb = &vmi->bblist[vmi->bbcount]; end_bb(bb, -1, 0); free(bb->regs_used); free(bb->regs_defined); - (bb - 1) ->end--; - for (i=0; i < vmi->bbcount; i++) { - basic_block bb = &vmi->bblist[i]; - bb->pred_count = bb->succ_count = 0; - bb->succ_list = malloc(2* sizeof(int)); - bb->pred_list = malloc(sizeof(int)); - bb->reg_assigns = NULL; - } - for (i=0; i < vmi->bbcount; i++) { - basic_block bb = &vmi->bblist[i]; - if (bb->fall_through) { - bb->succ_list[bb->succ_count] = i+1; - bb->succ_count++; - add_pred(&vmi->bblist[i+1], i); - } - if (bb->end_branch_label != -1) { - int j; - for (j=0; j < vmi->bbcount; j++) { - if (vmi->bblist[j].label == bb->end_branch_label) { - bb->succ_list[bb->succ_count] = j; - bb->succ_count++; - add_pred(&vmi->bblist[j], i); - j = vmi->bbcount; - } - } - } + (bb - 1)->end--; + for (i = 0; i < vmi->bbcount; i++) { + basic_block bb = &vmi->bblist[i]; + bb->pred_count = bb->succ_count = 0; + bb->succ_list = malloc(2 * sizeof(int)); + bb->pred_list = malloc(sizeof(int)); + bb->reg_assigns = NULL; + } + for (i = 0; i < vmi->bbcount; i++) { + basic_block bb = &vmi->bblist[i]; + if (bb->fall_through) { + bb->succ_list[bb->succ_count] = (int)i + 1; + bb->succ_count++; + add_pred(&vmi->bblist[i + 1], (int)i); + } + if (bb->end_branch_label != -1) { + int j; + for (j = 0; j < vmi->bbcount; j++) { + if (vmi->bblist[j].label == bb->end_branch_label) { + bb->succ_list[bb->succ_count] = j; + bb->succ_count++; + add_pred(&vmi->bblist[j], (int)i); + j = vmi->bbcount; + } + } + } } build_live(c); -/* calculate_depth(c);*/ + /* calculate_depth(c);*/ } - -typedef void (*bv_func)(int bit, void *p1, void *p2); +typedef void (*bv_func)(int bit, void* p1, void* p2); static void do_reg_assign(int bit, basic_block bb, dill_stream c) @@ -1250,282 +1282,284 @@ do_reg_assign(int bit, basic_block bb, dill_stream c) /* no local preg for live registers */ int preg; if ((c->p->vregs[bit].use_info.use_count == 0) && - (c->p->vregs[bit].use_info.def_count == 0)) { - if (c->dill_debug) - printf("virtual reg %d optimized away\n", bit + 100); - return; + (c->p->vregs[bit].use_info.def_count == 0)) { + if (c->dill_debug) + printf("virtual reg %d optimized away\n", bit + 100); + return; } if (bit_vec_is_set(bb->live_at_end, bit)) { - c->p->vregs[bit].need_assign = 1; - return; + c->p->vregs[bit].need_assign = 1; + return; } if (dill_raw_getreg(c, &preg, c->p->vregs[bit].typ, DILL_VAR) == 0) { - c->p->vregs[bit].need_assign = 1; - bb->reg_assigns[bit] = -1; - if (c->dill_debug) - printf("No more tmp regs for virtual reg %d\n", bit + 100); + c->p->vregs[bit].need_assign = 1; + bb->reg_assigns[bit] = -1; + if (c->dill_debug) + printf("No more tmp regs for virtual reg %d\n", bit + 100); } else { - bb->reg_assigns[bit] = preg; - if (c->dill_debug) - printf("virtual reg %d assigned to preg %d\n", - bit + 100, bb->reg_assigns[bit]); + bb->reg_assigns[bit] = preg; + if (c->dill_debug) + printf("virtual reg %d assigned to preg %d\n", bit + 100, + bb->reg_assigns[bit]); } } static void -do_use_def_count(dill_stream c, basic_block bb, virtual_insn *insns, int loc) +do_use_def_count(dill_stream c, basic_block bb, virtual_insn* insns, int loc) { - virtual_insn *insn = &((virtual_insn *)insns)[loc]; - switch(insn->class_code) { + virtual_insn* insn = &((virtual_insn*)insns)[loc]; + switch (insn->class_code) { case iclass_arith3: case iclass_compare: - set_used(c, insn->opnds.a3.src1); - set_used(c, insn->opnds.a3.src2); - set_defined(c, insn->opnds.a3.dest); - break; + set_used(c, insn->opnds.a3.src1); + set_used(c, insn->opnds.a3.src2); + set_defined(c, insn->opnds.a3.dest); + break; case iclass_arith3i: - set_used(c, insn->opnds.a3i.src); - set_defined(c, insn->opnds.a3i.dest); - break; + set_used(c, insn->opnds.a3i.src); + set_defined(c, insn->opnds.a3i.dest); + break; case iclass_arith2: - set_used(c, insn->opnds.a2.src); - set_defined(c, insn->opnds.a2.dest); - break; + set_used(c, insn->opnds.a2.src); + set_defined(c, insn->opnds.a2.dest); + break; case iclass_convert: - set_used(c, insn->opnds.a2.src); - set_defined(c, insn->opnds.a2.dest); - break; + set_used(c, insn->opnds.a2.src); + set_defined(c, insn->opnds.a2.dest); + break; case iclass_lea: - set_used(c, insn->opnds.a3i.src); - set_defined(c, insn->opnds.a3i.dest); - break; + set_used(c, insn->opnds.a3i.src); + set_defined(c, insn->opnds.a3i.dest); + break; case iclass_loadstorei: - set_used(c, insn->opnds.a3i.src); - if (insn->insn_code & 0x10) { - /* store */ - set_used(c, insn->opnds.a3i.dest); - } else { - set_defined(c, insn->opnds.a3i.dest); - } - break; + set_used(c, insn->opnds.a3i.src); + if (insn->insn_code & 0x10) { + /* store */ + set_used(c, insn->opnds.a3i.dest); + } else { + set_defined(c, insn->opnds.a3i.dest); + } + break; case iclass_loadstore: - set_used(c, insn->opnds.a3.src1); - set_used(c, insn->opnds.a3.src2); - if (insn->insn_code & 0x10) { - /* store */ - set_used(c, insn->opnds.a3.dest); - } else { - set_defined(c, insn->opnds.a3.dest); - } - break; + set_used(c, insn->opnds.a3.src1); + set_used(c, insn->opnds.a3.src2); + if (insn->insn_code & 0x10) { + /* store */ + set_used(c, insn->opnds.a3.dest); + } else { + set_defined(c, insn->opnds.a3.dest); + } + break; case iclass_set: - set_defined(c, insn->opnds.a3i.dest); - break; + set_defined(c, insn->opnds.a3i.dest); + break; case iclass_setf: - set_defined(c, insn->opnds.sf.dest); - break; + set_defined(c, insn->opnds.sf.dest); + break; case iclass_mov: - set_used(c, insn->opnds.a2.src); - set_defined(c, insn->opnds.a2.dest); - break; + set_used(c, insn->opnds.a2.src); + set_defined(c, insn->opnds.a2.dest); + break; case iclass_reti: - break; + break; case iclass_ret: - set_used(c, insn->opnds.a1.src); - break; + set_used(c, insn->opnds.a1.src); + break; case iclass_branch: - set_used(c, insn->opnds.br.src1); - set_used(c, insn->opnds.br.src2); - break; + set_used(c, insn->opnds.br.src1); + set_used(c, insn->opnds.br.src2); + break; case iclass_branchi: - set_used(c, insn->opnds.bri.src); - break; + set_used(c, insn->opnds.bri.src); + break; case iclass_jump_to_label: - break; + break; case iclass_jump_to_reg: - set_used(c, insn->opnds.br.src1); - break; + set_used(c, insn->opnds.br.src1); + break; case iclass_jump_to_imm: - break; + break; case iclass_special: - break; + break; case iclass_call: { - int reg = insn->insn_code & 0x10; - if ((insn->insn_code & 0xf) != DILL_V) { - set_defined(c, insn->opnds.calli.src); - } - if (reg != 0) { - long imm = (long)insn->opnds.calli.imm_l; - int src1_vreg = imm; - set_used(c, src1_vreg); - } - break; + int reg = insn->insn_code & 0x10; + if ((insn->insn_code & 0xf) != DILL_V) { + set_defined(c, insn->opnds.calli.src); + } + if (reg != 0) { + size_t imm = (size_t)insn->opnds.calli.imm_l; + int src1_vreg = (int)imm; + set_used(c, src1_vreg); + } + break; } case iclass_push: - if ((short)insn->opnds.a1.src >= 0) - set_used(c, insn->opnds.a1.src); - break; + if ((short)insn->opnds.a1.src >= 0) + set_used(c, insn->opnds.a1.src); + break; case iclass_pushi: - break; + break; case iclass_pushf: - break; + break; case iclass_nop: - break; + break; } } static void -reset_use_def_count(dill_stream c, virtual_insn *insns, virtual_mach_info vmi) +reset_use_def_count(dill_stream c, virtual_insn* insns, virtual_mach_info vmi) { - int i; - for(i=0; i< c->p->vreg_count; i++) { - c->p->vregs[i].use_info.use_count = 0; - c->p->vregs[i].use_info.def_count = 0; + for (i = 0; i < c->p->vreg_count; i++) { + c->p->vregs[i].use_info.use_count = 0; + c->p->vregs[i].use_info.def_count = 0; } - for(i=0; i < c->p->c_param_count; i++) { - c->p->c_param_args[i].used = 0; + for (i = 0; i < c->p->c_param_count; i++) { + c->p->c_param_args[i].used = 0; } apply_to_each(c, insns, vmi, do_use_def_count); } - + void -foreach_bit(bit_vec v, bv_func func, void *p1, void *p2) +foreach_bit(bit_vec v, bv_func func, void* p1, void* p2) { int i; - for (i=0; i< v->len; i++) { - int j; - for (j = 0; j < 2; j++) { - unsigned char nibble = (v->vec[i] >> (j * 4)) & 0xf; - switch(nibble) { - case 0xf: - func(i * 8 + j * 4 + 3, p1, p2); - func(i * 8 + j * 4 + 2, p1, p2); - func(i * 8 + j * 4 + 1, p1, p2); - func(i * 8 + j * 4 + 0, p1, p2); - break; - case 0xe: - func(i * 8 + j * 4 + 3, p1, p2); - func(i * 8 + j * 4 + 2, p1, p2); - func(i * 8 + j * 4 + 1, p1, p2); - break; - case 0xd: - func(i * 8 + j * 4 + 3, p1, p2); - func(i * 8 + j * 4 + 2, p1, p2); - func(i * 8 + j * 4 + 0, p1, p2); - break; - case 0xc: - func(i * 8 + j * 4 + 3, p1, p2); - func(i * 8 + j * 4 + 2, p1, p2); - break; - case 0xb: - func(i * 8 + j * 4 + 3, p1, p2); - func(i * 8 + j * 4 + 1, p1, p2); - func(i * 8 + j * 4 + 0, p1, p2); - break; - case 0xa: - func(i * 8 + j * 4 + 3, p1, p2); - func(i * 8 + j * 4 + 1, p1, p2); - break; - case 0x9: - func(i * 8 + j * 4 + 3, p1, p2); - func(i * 8 + j * 4 + 0, p1, p2); - break; - case 0x8: - func(i * 8 + j * 4 + 3, p1, p2); - break; - case 0x7: - func(i * 8 + j * 4 + 2, p1, p2); - func(i * 8 + j * 4 + 1, p1, p2); - func(i * 8 + j * 4 + 0, p1, p2); - break; - case 0x6: - func(i * 8 + j * 4 + 2, p1, p2); - func(i * 8 + j * 4 + 1, p1, p2); - break; - case 0x5: - func(i * 8 + j * 4 + 2, p1, p2); - func(i * 8 + j * 4 + 0, p1, p2); - break; - case 0x4: - func(i * 8 + j * 4 + 2, p1, p2); - break; - case 0x3: - func(i * 8 + j * 4 + 1, p1, p2); - func(i * 8 + j * 4 + 0, p1, p2); - break; - case 0x2: - func(i * 8 + j * 4 + 1, p1, p2); - break; - case 0x1: - func(i * 8 + j * 4 + 0, p1, p2); - break; - case 0x0: - break; - } - } + for (i = 0; i < v->len; i++) { + int j; + for (j = 0; j < 2; j++) { + unsigned char nibble = (v->vec[i] >> (j * 4)) & 0xf; + switch (nibble) { + case 0xf: + func(i * 8 + j * 4 + 3, p1, p2); + func(i * 8 + j * 4 + 2, p1, p2); + func(i * 8 + j * 4 + 1, p1, p2); + func(i * 8 + j * 4 + 0, p1, p2); + break; + case 0xe: + func(i * 8 + j * 4 + 3, p1, p2); + func(i * 8 + j * 4 + 2, p1, p2); + func(i * 8 + j * 4 + 1, p1, p2); + break; + case 0xd: + func(i * 8 + j * 4 + 3, p1, p2); + func(i * 8 + j * 4 + 2, p1, p2); + func(i * 8 + j * 4 + 0, p1, p2); + break; + case 0xc: + func(i * 8 + j * 4 + 3, p1, p2); + func(i * 8 + j * 4 + 2, p1, p2); + break; + case 0xb: + func(i * 8 + j * 4 + 3, p1, p2); + func(i * 8 + j * 4 + 1, p1, p2); + func(i * 8 + j * 4 + 0, p1, p2); + break; + case 0xa: + func(i * 8 + j * 4 + 3, p1, p2); + func(i * 8 + j * 4 + 1, p1, p2); + break; + case 0x9: + func(i * 8 + j * 4 + 3, p1, p2); + func(i * 8 + j * 4 + 0, p1, p2); + break; + case 0x8: + func(i * 8 + j * 4 + 3, p1, p2); + break; + case 0x7: + func(i * 8 + j * 4 + 2, p1, p2); + func(i * 8 + j * 4 + 1, p1, p2); + func(i * 8 + j * 4 + 0, p1, p2); + break; + case 0x6: + func(i * 8 + j * 4 + 2, p1, p2); + func(i * 8 + j * 4 + 1, p1, p2); + break; + case 0x5: + func(i * 8 + j * 4 + 2, p1, p2); + func(i * 8 + j * 4 + 0, p1, p2); + break; + case 0x4: + func(i * 8 + j * 4 + 2, p1, p2); + break; + case 0x3: + func(i * 8 + j * 4 + 1, p1, p2); + func(i * 8 + j * 4 + 0, p1, p2); + break; + case 0x2: + func(i * 8 + j * 4 + 1, p1, p2); + break; + case 0x1: + func(i * 8 + j * 4 + 0, p1, p2); + break; + case 0x0: + break; + } + } } } static void -do_register_assign(dill_stream c, void *insns, void *code_end, int vlp, - virtual_mach_info vmi) +do_register_assign(dill_stream c, + void* insns, + void* code_end, + int vlp, + virtual_mach_info vmi) { int i; int itmpa, itmpb, dtmpa, dtmpb; if ((dill_raw_getreg(c, &itmpa, DILL_L, DILL_TEMP) == 0) || - (dill_raw_getreg(c, &itmpb, DILL_L, DILL_TEMP) == 0)) { - fprintf(stderr, "Failure to get temporary regs in register assign\n"); + (dill_raw_getreg(c, &itmpb, DILL_L, DILL_TEMP) == 0)) { + fprintf(stderr, "Failure to get temporary regs in register assign\n"); } dill_raw_getreg(c, &dtmpa, DILL_D, DILL_TEMP); dill_raw_getreg(c, &dtmpb, DILL_D, DILL_TEMP); - for (i=0; i< DILL_B; i++) { - switch(i) { - case DILL_D: - case DILL_F: - c->p->v_tmps[i][0] = dtmpa; - c->p->v_tmps[i][1] = dtmpb; - c->p->v_tmps[i][2] = dtmpa; - break; - default: - c->p->v_tmps[i][0] = itmpa; - c->p->v_tmps[i][1] = itmpb; - c->p->v_tmps[i][2] = c->p->machine_strr_tmp_reg; - break; - } - } - - for (i= 0; i < vmi->bbcount; i++) { - basic_block bb = &vmi->bblist[i]; - int j; - bb->reg_assigns = malloc(sizeof(short) * c->p->vreg_count); - memset(bb->reg_assigns, 0xff, sizeof(short) * c->p->vreg_count); - foreach_bit(bb->regs_defined, (bv_func) do_reg_assign, bb, c); - for (j = 0 ; j < c->p->vreg_count; j++) { - if (bb->reg_assigns[j] != -1) { - dill_raw_putreg(c, bb->reg_assigns[j], c->p->vregs[j].typ); - } - } - } - - for(i=0; i< c->p->vreg_count; i++) { - if (i == (vlp - 100) ) { - c->p->vregs[i].preg = c->dill_local_pointer; - c->p->vregs[i].offset = 0; - } else if (c->p->vregs[i].typ == DILL_B) { - /* block, size stored in offset value */ - int size = c->p->vregs[i].offset; - c->p->vregs[i].preg = -1; - c->p->vregs[i].offset = dill_localb(c, size); - } else { - c->p->vregs[i].preg = -1; - if (c->p->vregs[i].typ != DILL_V) { - c->p->vregs[i].offset = dill_local(c, c->p->vregs[i].typ); - } else { - printf("internal void register error\n"); - } - } + for (i = 0; i < DILL_B; i++) { + switch (i) { + case DILL_D: + case DILL_F: + c->p->v_tmps[i][0] = dtmpa; + c->p->v_tmps[i][1] = dtmpb; + c->p->v_tmps[i][2] = dtmpa; + break; + default: + c->p->v_tmps[i][0] = itmpa; + c->p->v_tmps[i][1] = itmpb; + c->p->v_tmps[i][2] = c->p->machine_strr_tmp_reg; + break; + } + } + + for (i = 0; i < vmi->bbcount; i++) { + basic_block bb = &vmi->bblist[i]; + int j; + bb->reg_assigns = malloc(sizeof(short) * c->p->vreg_count); + memset(bb->reg_assigns, 0xff, sizeof(short) * c->p->vreg_count); + foreach_bit(bb->regs_defined, (bv_func)do_reg_assign, bb, c); + for (j = 0; j < c->p->vreg_count; j++) { + if (bb->reg_assigns[j] != -1) { + dill_raw_putreg(c, bb->reg_assigns[j], c->p->vregs[j].typ); + } + } + } + + for (i = 0; i < c->p->vreg_count; i++) { + if (i == (vlp - 100)) { + c->p->vregs[i].preg = c->dill_local_pointer; + c->p->vregs[i].offset = 0; + } else if (c->p->vregs[i].typ == DILL_B) { + /* block, size stored in offset value */ + int size = c->p->vregs[i].offset; + c->p->vregs[i].preg = -1; + c->p->vregs[i].offset = dill_localb(c, size); + } else { + c->p->vregs[i].preg = -1; + if (c->p->vregs[i].typ != DILL_V) { + c->p->vregs[i].offset = dill_local(c, c->p->vregs[i].typ); + } else { + printf("internal void register error\n"); + } + } } } @@ -1533,17 +1567,17 @@ static int preg_of(dill_stream c, basic_block bb, int vreg) { if (vreg >= 100) { - if (bb->reg_assigns[vreg - 100] == -1) { - return c->p->vregs[vreg - 100].preg; - } else { - return bb->reg_assigns[vreg - 100]; - } + if (bb->reg_assigns[vreg - 100] == -1) { + return c->p->vregs[vreg - 100].preg; + } else { + return bb->reg_assigns[vreg - 100]; + } } else { - /* parameter */; - if (c->p->c_param_args[vreg].is_register) { - return c->p->c_param_args[vreg].in_reg; - } - return -1; + /* parameter */; + if (c->p->c_param_args[vreg].is_register) { + return c->p->c_param_args[vreg].in_reg; + } + return -1; } } @@ -1551,10 +1585,10 @@ static int offset_of(dill_stream c, int vreg) { if (vreg >= 100) { - return c->p->vregs[vreg - 100].offset; + return c->p->vregs[vreg - 100].offset; } else { - /* parameter */; - return c->p->c_param_args[vreg].offset; + /* parameter */; + return c->p->c_param_args[vreg].offset; } } @@ -1562,12 +1596,14 @@ extern void dill_virtual_lea(dill_stream c, int dest, int src) { if (src < 100) { - printf("error, attempt to do dill_virtual_lea on non-virtual\n"); - return; + printf("error, attempt to do dill_virtual_lea on non-virtual\n"); + return; } if (dill_type_of(c, src) != DILL_B) { - printf("error, attempt to do dill_virtual_lea on variable of type other than V_B\n"); - return; + printf( + "error, attempt to do dill_virtual_lea on variable of type other " + "than V_B\n"); + return; } dill_lea(c, dest, src, 0); } @@ -1586,12 +1622,12 @@ load_oprnd(dill_stream c, int tmp_num, int vreg) int typ = dill_type_of(c, vreg); int tmp = c->p->v_tmps[typ][tmp_num]; if (vreg >= 100) { - c->j->loadi(c, typ, 0, tmp, c->dill_local_pointer, offset); + c->j->loadi(c, typ, 0, tmp, c->dill_local_pointer, offset); } else { - c->j->loadi(c, typ, 0, tmp, c->dill_param_reg_pointer, offset); + c->j->loadi(c, typ, 0, tmp, c->dill_param_reg_pointer, offset); } return tmp; -} +} static int is_commutative(int insn_code) @@ -1604,7 +1640,7 @@ is_commutative(int insn_code) case dill_jmp_addp: case dill_jmp_addf: case dill_jmp_addd: - return 1; + return 1; case dill_jmp_subi: case dill_jmp_subu: case dill_jmp_subul: @@ -1612,14 +1648,14 @@ is_commutative(int insn_code) case dill_jmp_subp: case dill_jmp_subf: case dill_jmp_subd: - return 0; + return 0; case dill_jmp_muli: case dill_jmp_mulu: case dill_jmp_mulul: case dill_jmp_mull: case dill_jmp_mulf: case dill_jmp_muld: - return 1; + return 1; case dill_jmp_divi: case dill_jmp_divu: case dill_jmp_divul: @@ -1630,7 +1666,7 @@ is_commutative(int insn_code) case dill_jmp_modu: case dill_jmp_modul: case dill_jmp_modl: - return 0; + return 0; case dill_jmp_xori: case dill_jmp_xoru: case dill_jmp_xorul: @@ -1643,7 +1679,7 @@ is_commutative(int insn_code) case dill_jmp_oru: case dill_jmp_orul: case dill_jmp_orl: - return 1; + return 1; case dill_jmp_lshi: case dill_jmp_lshu: case dill_jmp_lshul: @@ -1652,16 +1688,16 @@ is_commutative(int insn_code) case dill_jmp_rshu: case dill_jmp_rshul: case dill_jmp_rshl: - return 0; + return 0; default: - printf("Unknown opcode in is_commutative\n"); - return 0; + printf("Unknown opcode in is_commutative\n"); + return 0; } } static int is_compare_commutative(int insn_code) { - switch(insn_code) { + switch (insn_code) { case dill_jmp_ceqi: case dill_jmp_cequ: case dill_jmp_cequl: @@ -1669,7 +1705,7 @@ is_compare_commutative(int insn_code) case dill_jmp_ceqp: case dill_jmp_ceqd: case dill_jmp_ceqf: - return 1; + return 1; case dill_jmp_cgei: case dill_jmp_cgeu: case dill_jmp_cgeul: @@ -1698,7 +1734,7 @@ is_compare_commutative(int insn_code) case dill_jmp_cltp: case dill_jmp_cltd: case dill_jmp_cltf: - return 0; + return 0; case dill_jmp_cnei: case dill_jmp_cneu: case dill_jmp_cneul: @@ -1706,10 +1742,10 @@ is_compare_commutative(int insn_code) case dill_jmp_cnep: case dill_jmp_cned: case dill_jmp_cnef: - return 1; + return 1; default: - printf("Unknown opcode in is_compare_commutative\n"); - return 0; + printf("Unknown opcode in is_compare_commutative\n"); + return 0; } } @@ -1720,25 +1756,26 @@ store_oprnd(dill_stream c, int tmp_num, int vreg) int typ = dill_type_of(c, vreg); int tmp = c->p->v_tmps[typ][tmp_num]; if (vreg >= 100) { - c->j->storei(c, typ, 0, tmp, c->dill_local_pointer, offset); + c->j->storei(c, typ, 0, tmp, c->dill_local_pointer, offset); } else { - c->j->storei(c, typ, 0, tmp, c->dill_param_reg_pointer, offset); + c->j->storei(c, typ, 0, tmp, c->dill_param_reg_pointer, offset); } return tmp; -} +} typedef struct label_translation { int old_location; int old_label; int new_label; -} *label_translation_table; +} * label_translation_table; static int get_new_label(int old_label, label_translation_table ltable) { while (ltable->old_label != -1) { - if (ltable->old_label == old_label) return ltable->new_label; - ltable++; + if (ltable->old_label == old_label) + return ltable->new_label; + ltable++; } printf("New label not found\n"); return -1; @@ -1748,7 +1785,8 @@ static void emit_getreg(int bit, basic_block bb, dill_stream c) { if (bb->reg_assigns[bit] != -1) { - dill_dealloc_specific(c, bb->reg_assigns[bit], c->p->vregs[bit].typ, DILL_VAR); + dill_dealloc_specific(c, bb->reg_assigns[bit], c->p->vregs[bit].typ, + DILL_VAR); } } @@ -1756,773 +1794,771 @@ static void emit_putreg(int bit, basic_block bb, dill_stream c) { if (bb->reg_assigns[bit] != -1) { - dill_raw_putreg(c, bb->reg_assigns[bit], c->p->vregs[bit].typ); + dill_raw_putreg(c, bb->reg_assigns[bit], c->p->vregs[bit].typ); } } static int count_verbose = -1; static void -emit_insns(dill_stream c, void *insns, label_translation_table ltable, - virtual_mach_info vmi) +emit_insns(dill_stream c, + void* insns, + label_translation_table ltable, + virtual_mach_info vmi) { int label_xlate = 0; - int i, j = 0; - virtual_insn *ip; + size_t i, j = 0; + virtual_insn* ip; if (count_verbose == -1) { - count_verbose = (getenv ("DILL_COUNTS") != NULL); + count_verbose = (getenv("DILL_COUNTS") != NULL); } for (i = 0; i < vmi->bbcount; i++) { - basic_block bb = &vmi->bblist[i]; - int last_dest_vreg = -1; - int last_store_loc = 0; - int insn_start = (int)((char*)c->p->cur_ip - (char *)c->p->code_base); - int insn_count = bb->end - bb->start; - foreach_bit(bb->regs_defined, (bv_func) emit_getreg, bb, c); - for (j = bb->start; j <= bb->end; j++) { - int loc; - ip = &((virtual_insn *)insns)[j]; - loc = (int)((char*)ip - (char*)insns); - while ((loc != 0) && (ltable[label_xlate].old_location == loc)) { - dill_mark_label(c, ltable[label_xlate].new_label); - label_xlate++; - } - if (c->dill_debug) { - printf(" v "); - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - switch(ip->class_code) { - case iclass_arith3: { - /* arith 3 operand integer insns */ - int dest_vreg = ip->opnds.a3.dest; - int src1_vreg = ip->opnds.a3.src1; - int src2_vreg = ip->opnds.a3.src2; - int dest_preg; - int src1_preg; - int src2_preg; - int insn_code = ip->insn_code; - if ((last_dest_vreg == src2_vreg) && - is_commutative(insn_code)) { - /* we only optimize opnd1, switch them */ - src1_vreg = ip->opnds.a3.src2; - src2_vreg = ip->opnds.a3.src1; - } - dest_preg = preg_of(c, bb, dest_vreg); - src1_preg = preg_of(c, bb, src1_vreg); - src2_preg = preg_of(c, bb, src2_vreg); - if (src1_preg == -1) { - /* load src1 */ - if ((last_dest_vreg == src1_vreg) && - (tmp_for_vreg(c, 0, src1_vreg) != -1)) { - if (has_single_def_use(c, src1_vreg)) { - if (c->dill_debug) { - printf(" -- Eliminating previous store -- \n"); - } - c->p->cur_ip = (char*)c->p->code_base + last_store_loc; - } - src1_preg = tmp_for_vreg(c, 0, src1_vreg); - } else { - src1_preg = load_oprnd(c, 0, src1_vreg); - } - } - if (src2_preg == -1) { - /* load src2 */ - src2_preg = load_oprnd(c, 1, src2_vreg); - } - if (dest_preg == -1) { - dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; - } - ( c->j->jmp_a3)[insn_code](c, - c->j->a3_data[insn_code].data1, - c->j->a3_data[insn_code].data2, - dest_preg, src1_preg, src2_preg); - if (preg_of(c, bb, dest_vreg) == -1) { - /* no dest reg, store result */ - last_store_loc = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); - store_oprnd(c, 0, dest_vreg); - last_dest_vreg = dest_vreg; - } else { - last_dest_vreg = -1; - } - } - break; - case iclass_compare: { - /* compare 3 operand insns */ - int dest_vreg = ip->opnds.a3.dest; - int src1_vreg = ip->opnds.a3.src1; - int src2_vreg = ip->opnds.a3.src2; - int dest_preg; - int src1_preg; - int src2_preg; - int insn_code = ip->insn_code; - if ((last_dest_vreg == src2_vreg) && - is_compare_commutative(insn_code)) { - /* we only optimize opnd1, switch them */ - src1_vreg = ip->opnds.a3.src2; - src2_vreg = ip->opnds.a3.src1; - } - dest_preg = preg_of(c, bb, dest_vreg); - src1_preg = preg_of(c, bb, src1_vreg); - src2_preg = preg_of(c, bb, src2_vreg); - if (src1_preg == -1) { - /* load src1 */ - if ((last_dest_vreg == src1_vreg) && - (tmp_for_vreg(c, 0, src1_vreg) != -1)) { - if (has_single_def_use(c, src1_vreg)) { - if (c->dill_debug) { - printf(" -- Eliminating previous store -- \n"); - } - c->p->cur_ip = (char*)c->p->code_base + last_store_loc; - } - src1_preg = tmp_for_vreg(c, 0, src1_vreg); - } else { - src1_preg = load_oprnd(c, 0, src1_vreg); - } - } - if (src2_preg == -1) { - /* load src2 */ - src2_preg = load_oprnd(c, 1, src2_vreg); - } - if (dest_preg == -1) { - dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; - } - ( c->j->jmp_c)[insn_code](c, - c->j->c_data[insn_code].data1, - c->j->c_data[insn_code].data2, - dest_preg, src1_preg, src2_preg); - if (preg_of(c, bb, dest_vreg) == -1) { - /* no dest reg, store result */ - last_store_loc = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); - store_oprnd(c, 0, dest_vreg); - last_dest_vreg = dest_vreg; - } else { - last_dest_vreg = -1; - } - } - break; - case iclass_arith2: { - /* arith 2 operand integer insns */ - int dest_vreg = ip->opnds.a2.dest; - int src_vreg = ip->opnds.a2.src; - int dest_preg = preg_of(c, bb, dest_vreg); - int src_preg = preg_of(c, bb, src_vreg); - int insn_code = ip->insn_code; - if (src_preg == -1) { - /* load src */ - if ((last_dest_vreg == src_vreg) && - (tmp_for_vreg(c, 0, src_vreg) != -1)) { - if (has_single_def_use(c, src_vreg)) { - if (c->dill_debug) { - printf(" -- Eliminating previous store -- \n"); - } - c->p->cur_ip = (char*)c->p->code_base + last_store_loc; - } - src_preg = tmp_for_vreg(c, 0, src_vreg); - } else { - src_preg = load_oprnd(c, 0, src_vreg); - } - } - if (dest_preg == -1) { - dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; - } - ( c->j->jmp_a2)[insn_code](c, - c->j->a2_data[insn_code].data1, - c->j->a2_data[insn_code].data2, - dest_preg, src_preg); - if (preg_of(c, bb, dest_vreg) == -1) { - /* no dest reg, store result */ - last_store_loc = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); - store_oprnd(c, 0, dest_vreg); - last_dest_vreg = dest_vreg; - } else { - last_dest_vreg = -1; - } - } - break; - case iclass_arith3i: - { - /* arith 3 immediate operand integer insns */ - int dest_vreg = ip->opnds.a3i.dest; - int src_vreg = ip->opnds.a3i.src; - intptr_t imm = ip->opnds.a3i.u.imm; - int dest_preg = preg_of(c, bb, dest_vreg); - int src_preg = preg_of(c, bb, src_vreg); - int insn_code = ip->insn_code; - if (src_preg == -1) { - /* load src */ - if ((last_dest_vreg == src_vreg) && - (tmp_for_vreg(c, 0, src_vreg) != -1)) { - if (has_single_def_use(c, src_vreg)) { - if (c->dill_debug) { - printf(" -- Eliminating previous store -- \n"); - } - c->p->cur_ip = (char*)c->p->code_base + last_store_loc; - } - src_preg = tmp_for_vreg(c, 0, src_vreg); - } else { - src_preg = load_oprnd(c, 0, src_vreg); - } - } - if (dest_preg == -1) { - dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; - } - ( c->j->jmp_a3i)[insn_code](c, - c->j->a3i_data[insn_code].data1, - c->j->a3i_data[insn_code].data2, - dest_preg, src_preg, imm); - if (preg_of(c, bb, dest_vreg) == -1) { - /* no dest reg, store result */ - last_store_loc = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); - store_oprnd(c, 0, dest_vreg); - last_dest_vreg = dest_vreg; - } else { - last_dest_vreg = -1; - } - } - break; - case iclass_ret:{ - /* arith operand integer insns */ - int src_vreg = ip->opnds.a1.src; - int src_preg = preg_of(c, bb, src_vreg); - if (src_preg == -1) { - /* load src */ - if ((last_dest_vreg == src_vreg) && - (tmp_for_vreg(c, 0, src_vreg) != -1)) { - if (has_single_def_use(c, src_vreg)) { - if (c->dill_debug) { - printf(" -- Eliminating previous store -- \n"); - } - c->p->cur_ip = (char*)c->p->code_base + last_store_loc; - } - src_preg = tmp_for_vreg(c, 0, src_vreg); - } else { - src_preg = load_oprnd(c, 0, src_vreg); - } - } - ( c->j->ret)(c, ip->insn_code, 0, src_preg); - last_dest_vreg = -1; - } - break; - case iclass_convert: { - /* conversion insns */ - int dest_vreg = ip->opnds.a2.dest; - int src_vreg = ip->opnds.a2.src; - int dest_preg = preg_of(c, bb, dest_vreg); - int src_preg = preg_of(c, bb, src_vreg); - int from_type = (ip->insn_code >> 4) & 0xf; - int to_type = ip->insn_code & 0xf; - if (src_preg == -1) { - /* load src */ - if ((last_dest_vreg == src_vreg) && - (tmp_for_vreg(c, 0, src_vreg) != -1)) { - if (has_single_def_use(c, src_vreg)) { - if (c->dill_debug) { - printf(" -- Eliminating previous store -- \n"); - } - c->p->cur_ip = (char*)c->p->code_base + last_store_loc; - } - src_preg = tmp_for_vreg(c, 0, src_vreg); - } else { - src_preg = load_oprnd(c, 0, src_vreg); - } - } - if (dest_preg == -1) { - dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; - } - ( c->j->convert)(c, from_type, to_type, dest_preg, src_preg); - if (preg_of(c, bb, dest_vreg) == -1) { - /* no dest reg, store result */ - last_store_loc = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); - store_oprnd(c, 0, dest_vreg); - last_dest_vreg = dest_vreg; - } else { - last_dest_vreg = -1; - } - } - break; - case iclass_loadstore: { - /* load/store 3 operand integer insns */ - int dest_vreg = ip->opnds.a3.dest; - int src1_vreg = ip->opnds.a3.src1; - int src2_vreg = ip->opnds.a3.src2; - int dest_preg; - int src1_preg; - int src2_preg; - int store = ((ip->insn_code & 0x10) == 0x10); - int bswap = ((ip->insn_code & 0x20) == 0x20); - int typ = ip->insn_code & 0xf; - - if (last_dest_vreg == src2_vreg) { - /* we only optimize opnd1, switch them */ - /* load store is commutative */ - src1_vreg = ip->opnds.a3.src2; - src2_vreg = ip->opnds.a3.src1; - } - dest_preg = preg_of(c, bb, dest_vreg); - src1_preg = preg_of(c, bb, src1_vreg); - src2_preg = preg_of(c, bb, src2_vreg); - if (src1_preg == -1) { - /* load src1 */ - if ((last_dest_vreg == src1_vreg) && - (tmp_for_vreg(c, 0, src1_vreg) != -1)) { - if (has_single_def_use(c, src1_vreg)) { - if (c->dill_debug) { - printf(" -- Eliminating previous store -- \n"); - } - c->p->cur_ip = (char*)c->p->code_base + last_store_loc; - } - src1_preg = tmp_for_vreg(c, 0, src1_vreg); - } else { - src1_preg = load_oprnd(c, 0, src1_vreg); - } - } - if (src2_preg == -1) { - /* load src2 */ - src2_preg = load_oprnd(c, 1, src2_vreg); - } - if (store == 0) { - if (dest_preg == -1) { - dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; - } - if (bswap) { - ( c->j->bsload)(c, typ, 0, dest_preg, src1_preg, src2_preg); - } else { - ( c->j->load)(c, typ, 0, dest_preg, src1_preg, src2_preg); - } - if (preg_of(c, bb, dest_vreg) == -1) { - /* no dest reg, store result */ - last_store_loc = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); - store_oprnd(c, 0, dest_vreg); - last_dest_vreg = dest_vreg; - } else { - last_dest_vreg = -1; - } - } else { - if (dest_preg == -1) { - dest_preg = load_oprnd(c, 2, dest_vreg); - } - ( c->j->store)(c, typ, 0, dest_preg, src1_preg, src2_preg); - last_dest_vreg = -1; - } - } - break; - case iclass_lea: - { - /* load effective address */ - int dest_vreg = ip->opnds.a3i.dest; - int src_vreg = ip->opnds.a3i.src; - intptr_t imm = ip->opnds.a3i.u.imm; - int dest_preg = preg_of(c, bb, dest_vreg); - int src_preg = preg_of(c, bb, src_vreg); - if (src_preg == -1) { - /* load src */ - if ((last_dest_vreg == src_vreg) && - (tmp_for_vreg(c, 0, src_vreg) != -1)) { - if (has_single_def_use(c, src_vreg)) { - if (c->dill_debug) { - printf(" -- Eliminating previous store -- \n"); - } - c->p->cur_ip = (char*)c->p->code_base + last_store_loc; - } - src_preg = tmp_for_vreg(c, 0, src_vreg); - } else { - src_preg = load_oprnd(c, 0, src_vreg); - } - } - if (dest_preg == -1) { - dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; - } - ( c->j->lea)(c, 0, 0, dest_preg, src_preg, imm); - if (preg_of(c, bb, dest_vreg) == -1) { - /* no dest reg, store result */ - last_store_loc = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); - store_oprnd(c, 0, dest_vreg); - last_dest_vreg = dest_vreg; - } else { - last_dest_vreg = -1; - } - } - break; - case iclass_loadstorei: - { - /* load store immediate operand integer insns */ - int dest_vreg = ip->opnds.a3i.dest; - int src_vreg = ip->opnds.a3i.src; - intptr_t imm = ip->opnds.a3i.u.imm; - int dest_preg = preg_of(c, bb, dest_vreg); - int src_preg = preg_of(c, bb, src_vreg); - int store = ((ip->insn_code & 0x10) == 0x10); - int bswap = ((ip->insn_code & 0x20) == 0x20); - int typ = ip->insn_code & 0xf; - if (src_preg == -1) { - /* load src */ - if ((last_dest_vreg == src_vreg) && - (tmp_for_vreg(c, 0, src_vreg) != -1)) { - if (has_single_def_use(c, src_vreg)) { - if (c->dill_debug) { - printf(" -- Eliminating previous store -- \n"); - } - c->p->cur_ip = (char*)c->p->code_base + last_store_loc; - } - src_preg = tmp_for_vreg(c, 0, src_vreg); - } else { - src_preg = load_oprnd(c, 0, src_vreg); - } - } - if (store == 0) { - if (dest_preg == -1) { - dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; - } - if (bswap) { - ( c->j->bsloadi)(c, typ, 0, dest_preg, src_preg, imm); - } else { - ( c->j->loadi)(c, typ, 0, dest_preg, src_preg, imm); - } - if (preg_of(c, bb, dest_vreg) == -1) { - /* no dest reg, store result */ - last_store_loc = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); - store_oprnd(c, 0, dest_vreg); - last_dest_vreg = dest_vreg; - } else { - last_dest_vreg = -1; - } - } else { - if (dest_preg == -1) { - dest_preg = load_oprnd(c, 1, dest_vreg); - } - /* a store, dest is the source of the store */ - ( c->j->storei)(c, typ, 0, dest_preg, src_preg, imm); - last_dest_vreg = -1; - } - } - break; - case iclass_set: - { - /* load store immediate operand integer insns */ - int dest_vreg = ip->opnds.a3i.dest; - intptr_t imm = ip->opnds.a3i.u.imm; - int dest_preg = preg_of(c, bb, dest_vreg); - int typ = ip->insn_code & 0xf; - if (dest_preg == -1) { - dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; - } - ( c->j->set)(c, typ, 0, dest_preg, imm); - if (preg_of(c, bb, dest_vreg) == -1) { - /* no dest reg, store result */ - last_store_loc = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); - store_oprnd(c, 0, dest_vreg); - last_dest_vreg = dest_vreg; - } else { - last_dest_vreg = -1; - } - } - break; - case iclass_setf: - { - /* load store immediate operand integer insns */ - int dest_vreg = ip->opnds.sf.dest; - double imm = ip->opnds.sf.imm; - int dest_preg = preg_of(c, bb, dest_vreg); - int typ = ip->insn_code & 0xf; - if (dest_preg == -1) { - dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; - } - ( c->j->setf)(c, typ, 0, dest_preg, imm); - if (preg_of(c, bb, dest_vreg) == -1) { - /* no dest reg, store result */ - last_store_loc = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); - store_oprnd(c, 0, dest_vreg); - last_dest_vreg = dest_vreg; - } else { - last_dest_vreg = -1; - } - } - break; - case iclass_mov: { - /* mov insns */ - int dest_vreg = ip->opnds.a2.dest; - int src_vreg = ip->opnds.a2.src; - int dest_preg = preg_of(c, bb, dest_vreg); - int src_preg = preg_of(c, bb, src_vreg); - int typ = ip->insn_code & 0xf; - if (src_preg == -1) { - /* load src */ - if ((last_dest_vreg == src_vreg) && - (tmp_for_vreg(c, 0, src_vreg) != -1)) { - if (has_single_def_use(c, src_vreg)) { - if (c->dill_debug) { - printf(" -- Eliminating previous store -- \n"); - } - c->p->cur_ip = (char*)c->p->code_base + last_store_loc; - } - src_preg = tmp_for_vreg(c, 0, src_vreg); - } else { - src_preg = load_oprnd(c, 0, src_vreg); - } - } - if (dest_preg == -1) { - dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; - } - ( c->j->mov)(c, typ, 0, dest_preg, src_preg); - if (preg_of(c, bb, dest_vreg) == -1) { - /* no dest reg, store result */ - last_store_loc = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); - store_oprnd(c, 0, dest_vreg); - last_dest_vreg = dest_vreg; - } else { - last_dest_vreg = -1; - } - } - break; - case iclass_reti: - { - /* return immediate integer insns */ - intptr_t imm = ip->opnds.a3i.u.imm; - int typ = ip->insn_code & 0xf; - ( c->j->reti)(c, typ, 0, imm); - last_dest_vreg = -1; - } - break; - case iclass_branch: - { - /* branch */ - int br_op = ip->insn_code; - int label = get_new_label(ip->opnds.br.label, ltable); - int src1_vreg = ip->opnds.br.src1; - int src2_vreg = ip->opnds.br.src2; - int src1_preg; - int src2_preg; -/* if (last_dest_vreg == src2_vreg) { - # we should do this is we reverse the sense of the branch * - src1_vreg = ip->opnds.br.src2; - src2_vreg = ip->opnds.br.src1; - } -*/ - src1_preg = preg_of(c, bb, src1_vreg); - src2_preg = preg_of(c, bb, src2_vreg); - if (src1_preg == -1) { - /* load src1 */ - if ((last_dest_vreg == src1_vreg) && - (tmp_for_vreg(c, 0, src1_vreg) != -1)) { - if (has_single_def_use(c, src1_vreg)) { - if (c->dill_debug) { - printf(" -- Eliminating previous store -- \n"); - } - c->p->cur_ip = (char*)c->p->code_base + last_store_loc; - } - src1_preg = tmp_for_vreg(c, 0, src1_vreg); - } else { - src1_preg = load_oprnd(c, 0, src1_vreg); - } - } - if (src2_preg == -1) { - /* load src2 */ - src2_preg = load_oprnd(c, 1, src2_vreg); - } - ( c->j->jmp_b)[br_op](c, c->j->b_data[br_op].data1, - c->j->b_data[br_op].data2, - src1_preg, src2_preg, label); - last_dest_vreg = -1; - } - break; - case iclass_branchi: - { - /* branch immediate */ - int br_op = ip->insn_code; - int label = get_new_label(ip->opnds.bri.label, ltable); - int src1_vreg = ip->opnds.bri.src; - intptr_t imm = ip->opnds.bri.imm_l; - int src1_preg = preg_of(c, bb, src1_vreg); - if (src1_preg == -1) { - /* load src1 */ - if ((last_dest_vreg == src1_vreg) && - (tmp_for_vreg(c, 0, src1_vreg) != -1)) { - if (has_single_def_use(c, src1_vreg)) { - if (c->dill_debug) { - printf(" -- Eliminating previous store -- \n"); - } - c->p->cur_ip = (char*)c->p->code_base + last_store_loc; - } - src1_preg = tmp_for_vreg(c, 0, src1_vreg); - } else { - src1_preg = load_oprnd(c, 0, src1_vreg); - } - } - - ( c->j->jmp_bi)[br_op](c, c->j->b_data[br_op].data1, - c->j->b_data[br_op].data2, - src1_preg, imm, label); - last_dest_vreg = -1; - } - break; - case iclass_jump_to_label: - { - /* branch immediate */ - int label = get_new_label(ip->opnds.br.label, ltable); - dill_jv(c, label); - last_dest_vreg = -1; - } - break; - case iclass_jump_to_reg: - { - int src1_vreg = ip->opnds.br.src1; - int src1_preg = preg_of(c, bb, src1_vreg); - if (src1_preg == -1) { - /* load src1 */ - if ((last_dest_vreg == src1_vreg) && - (tmp_for_vreg(c, 0, src1_vreg) != -1)) { - if (has_single_def_use(c, src1_vreg)) { - if (c->dill_debug) { - printf(" -- Eliminating previous store -- \n"); - } - c->p->cur_ip = (char*)c->p->code_base + last_store_loc; - } - src1_preg = tmp_for_vreg(c, 0, src1_vreg); - } else { - src1_preg = load_oprnd(c, 0, src1_vreg); - } - } - - dill_jp(c, src1_preg); - last_dest_vreg = -1; - } - break; - case iclass_jump_to_imm: - { - void *imm = ip->opnds.bri.imm_a; - dill_jpi(c, imm); - last_dest_vreg = -1; - } - break; - case iclass_special: - dill_special(c, ip->opnds.spec.type, ip->opnds.spec.param); - break; - case iclass_call: - { - basic_block next_bb = &vmi->bblist[i+1]; - int dest_vreg = ip->opnds.calli.src; - int dest_preg = 0; - - int reg = ip->insn_code & 0x10; - int typ = ip->insn_code & 0xf; - int rr; - - if (typ != DILL_V) dest_preg = preg_of(c, next_bb, dest_vreg); - if (reg != 0) { - intptr_t src1_vreg = ip->opnds.calli.imm_l; - int src1_preg = preg_of(c, bb, src1_vreg); - if (src1_preg == -1) { - /* load src1 */ - if ((last_dest_vreg == src1_vreg) && - (tmp_for_vreg(c, 0, src1_vreg) != -1)) { - if (has_single_def_use(c, src1_vreg)) { - if (c->dill_debug) { - printf(" -- Eliminating previous store -- \n"); - } - c->p->cur_ip = (char*)c->p->code_base + last_store_loc; - } - src1_preg = tmp_for_vreg(c, 0, src1_vreg); - } else { - src1_preg = load_oprnd(c, 0, src1_vreg); - } - } - rr = dill_pcallr(c, typ, src1_preg); - } else { - rr = dill_pcall(c, typ, ip->opnds.calli.imm_a, ip->opnds.calli.xfer_name); - } - if (typ != DILL_V) { - if (preg_of(c, next_bb, dest_vreg) == -1) { - /* no dest reg, store result */ - int offset = offset_of(c, dest_vreg); - int typ = dill_type_of(c, dest_vreg); - if (dest_vreg >= 100) { - c->j->storei(c, typ, 0, rr, c->dill_local_pointer, - offset); - } else { - c->j->storei(c, typ, 0, rr, c->dill_param_reg_pointer, - offset); - } - } else { - /* move return value to result */ - c->j->mov(c, typ, 0, dest_preg, rr); - } - } - pushpop_inuse_regs(c, 1, ip); - last_dest_vreg = -1; - } - break; - case iclass_push: - { - int typ = ip->insn_code & 0xf; - int src1_vreg = ip->opnds.a1.src; - int src1_preg; - if ((short)ip->opnds.a1.src >= 0) { - /* neg 1 used to signal push init */ - src1_preg = preg_of(c, bb, src1_vreg); - if (src1_preg == -1) { - /* load src1 */ - if ((last_dest_vreg == src1_vreg) && - (tmp_for_vreg(c, 0, src1_vreg) != -1)) { - if (has_single_def_use(c, src1_vreg)) { - if (c->dill_debug) { - printf(" -- Eliminating previous store -- \n"); - } - c->p->cur_ip = (char*)c->p->code_base + last_store_loc; - } - src1_preg = tmp_for_vreg(c, 0, src1_vreg); - } else { - src1_preg = load_oprnd(c, 0, src1_vreg); - } - } - } else { - pushpop_inuse_regs(c, 0, ip); - src1_preg = -1; - } - dill_push_arg(c, typ, src1_preg); - last_dest_vreg = -1; - } - break; - case iclass_pushi: - { - int typ = ip->insn_code & 0xf; - if (typ == DILL_P) { - void *imm = ip->opnds.a3i.u.imm_a; - dill_push_argpi(c, imm); - } else { - intptr_t imm = ip->opnds.a3i.u.imm; - dill_push_argii(c, imm); - } - last_dest_vreg = -1; - } - break; - case iclass_pushf: - { - int typ = ip->insn_code & 0xf; - double imm = ip->opnds.sf.imm; - c->j->pushfi(c, typ, imm); - last_dest_vreg = -1; - } - break; - case iclass_nop: - break; - } - } - foreach_bit(bb->regs_defined, (bv_func)emit_putreg, bb, c); - if (count_verbose) { - int insn_end = (int)( (char*)c->p->cur_ip - (char*)c->p->code_base); - printf("Basic Block %d, %d virtual instructions, %d physical instructions\n", - i, insn_count, c->j->count_insn(c, insn_start, insn_end)); - } - } - if ((unsigned)ltable[label_xlate].old_location == j * sizeof(virtual_insn)) { - dill_mark_label(c, ltable[label_xlate].new_label); - label_xlate++; + basic_block bb = &vmi->bblist[i]; + int last_dest_vreg = -1; + int last_store_loc = 0; + int insn_start = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); + int insn_count = (int)(bb->end - bb->start); + foreach_bit(bb->regs_defined, (bv_func)emit_getreg, bb, c); + for (j = (size_t)bb->start; j <= (size_t)bb->end; j++) { + int loc; + ip = &((virtual_insn*)insns)[j]; + loc = (int)((char*)ip - (char*)insns); + while ((loc != 0) && (ltable[label_xlate].old_location == loc)) { + dill_mark_label(c, ltable[label_xlate].new_label); + label_xlate++; + } + if (c->dill_debug) { + printf(" v "); + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + switch (ip->class_code) { + case iclass_arith3: { + /* arith 3 operand integer insns */ + int dest_vreg = ip->opnds.a3.dest; + int src1_vreg = ip->opnds.a3.src1; + int src2_vreg = ip->opnds.a3.src2; + int dest_preg; + int src1_preg; + int src2_preg; + int insn_code = ip->insn_code; + if ((last_dest_vreg == src2_vreg) && + is_commutative(insn_code)) { + /* we only optimize opnd1, switch them */ + src1_vreg = ip->opnds.a3.src2; + src2_vreg = ip->opnds.a3.src1; + } + dest_preg = preg_of(c, bb, dest_vreg); + src1_preg = preg_of(c, bb, src1_vreg); + src2_preg = preg_of(c, bb, src2_vreg); + if (src1_preg == -1) { + /* load src1 */ + if ((last_dest_vreg == src1_vreg) && + (tmp_for_vreg(c, 0, src1_vreg) != -1)) { + if (has_single_def_use(c, src1_vreg)) { + if (c->dill_debug) { + printf(" -- Eliminating previous store -- \n"); + } + c->p->cur_ip = + (char*)c->p->code_base + last_store_loc; + } + src1_preg = tmp_for_vreg(c, 0, src1_vreg); + } else { + src1_preg = load_oprnd(c, 0, src1_vreg); + } + } + if (src2_preg == -1) { + /* load src2 */ + src2_preg = load_oprnd(c, 1, src2_vreg); + } + if (dest_preg == -1) { + dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; + } + (c->j->jmp_a3)[insn_code](c, c->j->a3_data[insn_code].data1, + c->j->a3_data[insn_code].data2, + dest_preg, src1_preg, src2_preg); + if (preg_of(c, bb, dest_vreg) == -1) { + /* no dest reg, store result */ + last_store_loc = + (int)((char*)c->p->cur_ip - (char*)c->p->code_base); + store_oprnd(c, 0, dest_vreg); + last_dest_vreg = dest_vreg; + } else { + last_dest_vreg = -1; + } + } break; + case iclass_compare: { + /* compare 3 operand insns */ + int dest_vreg = ip->opnds.a3.dest; + int src1_vreg = ip->opnds.a3.src1; + int src2_vreg = ip->opnds.a3.src2; + int dest_preg; + int src1_preg; + int src2_preg; + int insn_code = ip->insn_code; + if ((last_dest_vreg == src2_vreg) && + is_compare_commutative(insn_code)) { + /* we only optimize opnd1, switch them */ + src1_vreg = ip->opnds.a3.src2; + src2_vreg = ip->opnds.a3.src1; + } + dest_preg = preg_of(c, bb, dest_vreg); + src1_preg = preg_of(c, bb, src1_vreg); + src2_preg = preg_of(c, bb, src2_vreg); + if (src1_preg == -1) { + /* load src1 */ + if ((last_dest_vreg == src1_vreg) && + (tmp_for_vreg(c, 0, src1_vreg) != -1)) { + if (has_single_def_use(c, src1_vreg)) { + if (c->dill_debug) { + printf(" -- Eliminating previous store -- \n"); + } + c->p->cur_ip = + (char*)c->p->code_base + last_store_loc; + } + src1_preg = tmp_for_vreg(c, 0, src1_vreg); + } else { + src1_preg = load_oprnd(c, 0, src1_vreg); + } + } + if (src2_preg == -1) { + /* load src2 */ + src2_preg = load_oprnd(c, 1, src2_vreg); + } + if (dest_preg == -1) { + dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; + } + (c->j->jmp_c)[insn_code](c, c->j->c_data[insn_code].data1, + c->j->c_data[insn_code].data2, + dest_preg, src1_preg, src2_preg); + if (preg_of(c, bb, dest_vreg) == -1) { + /* no dest reg, store result */ + last_store_loc = + (int)((char*)c->p->cur_ip - (char*)c->p->code_base); + store_oprnd(c, 0, dest_vreg); + last_dest_vreg = dest_vreg; + } else { + last_dest_vreg = -1; + } + } break; + case iclass_arith2: { + /* arith 2 operand integer insns */ + int dest_vreg = ip->opnds.a2.dest; + int src_vreg = ip->opnds.a2.src; + int dest_preg = preg_of(c, bb, dest_vreg); + int src_preg = preg_of(c, bb, src_vreg); + int insn_code = ip->insn_code; + if (src_preg == -1) { + /* load src */ + if ((last_dest_vreg == src_vreg) && + (tmp_for_vreg(c, 0, src_vreg) != -1)) { + if (has_single_def_use(c, src_vreg)) { + if (c->dill_debug) { + printf(" -- Eliminating previous store -- \n"); + } + c->p->cur_ip = + (char*)c->p->code_base + last_store_loc; + } + src_preg = tmp_for_vreg(c, 0, src_vreg); + } else { + src_preg = load_oprnd(c, 0, src_vreg); + } + } + if (dest_preg == -1) { + dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; + } + (c->j->jmp_a2)[insn_code](c, c->j->a2_data[insn_code].data1, + c->j->a2_data[insn_code].data2, + dest_preg, src_preg); + if (preg_of(c, bb, dest_vreg) == -1) { + /* no dest reg, store result */ + last_store_loc = + (int)((char*)c->p->cur_ip - (char*)c->p->code_base); + store_oprnd(c, 0, dest_vreg); + last_dest_vreg = dest_vreg; + } else { + last_dest_vreg = -1; + } + } break; + case iclass_arith3i: { + /* arith 3 immediate operand integer insns */ + int dest_vreg = ip->opnds.a3i.dest; + int src_vreg = ip->opnds.a3i.src; + intptr_t imm = ip->opnds.a3i.u.imm; + int dest_preg = preg_of(c, bb, dest_vreg); + int src_preg = preg_of(c, bb, src_vreg); + int insn_code = ip->insn_code; + if (src_preg == -1) { + /* load src */ + if ((last_dest_vreg == src_vreg) && + (tmp_for_vreg(c, 0, src_vreg) != -1)) { + if (has_single_def_use(c, src_vreg)) { + if (c->dill_debug) { + printf(" -- Eliminating previous store -- \n"); + } + c->p->cur_ip = + (char*)c->p->code_base + last_store_loc; + } + src_preg = tmp_for_vreg(c, 0, src_vreg); + } else { + src_preg = load_oprnd(c, 0, src_vreg); + } + } + if (dest_preg == -1) { + dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; + } + (c->j->jmp_a3i)[insn_code](c, c->j->a3i_data[insn_code].data1, + c->j->a3i_data[insn_code].data2, + dest_preg, src_preg, imm); + if (preg_of(c, bb, dest_vreg) == -1) { + /* no dest reg, store result */ + last_store_loc = + (int)((char*)c->p->cur_ip - (char*)c->p->code_base); + store_oprnd(c, 0, dest_vreg); + last_dest_vreg = dest_vreg; + } else { + last_dest_vreg = -1; + } + } break; + case iclass_ret: { + /* arith operand integer insns */ + int src_vreg = ip->opnds.a1.src; + int src_preg = preg_of(c, bb, src_vreg); + if (src_preg == -1) { + /* load src */ + if ((last_dest_vreg == src_vreg) && + (tmp_for_vreg(c, 0, src_vreg) != -1)) { + if (has_single_def_use(c, src_vreg)) { + if (c->dill_debug) { + printf(" -- Eliminating previous store -- \n"); + } + c->p->cur_ip = + (char*)c->p->code_base + last_store_loc; + } + src_preg = tmp_for_vreg(c, 0, src_vreg); + } else { + src_preg = load_oprnd(c, 0, src_vreg); + } + } + (c->j->ret)(c, ip->insn_code, 0, src_preg); + last_dest_vreg = -1; + } break; + case iclass_convert: { + /* conversion insns */ + int dest_vreg = ip->opnds.a2.dest; + int src_vreg = ip->opnds.a2.src; + int dest_preg = preg_of(c, bb, dest_vreg); + int src_preg = preg_of(c, bb, src_vreg); + int from_type = (ip->insn_code >> 4) & 0xf; + int to_type = ip->insn_code & 0xf; + if (src_preg == -1) { + /* load src */ + if ((last_dest_vreg == src_vreg) && + (tmp_for_vreg(c, 0, src_vreg) != -1)) { + if (has_single_def_use(c, src_vreg)) { + if (c->dill_debug) { + printf(" -- Eliminating previous store -- \n"); + } + c->p->cur_ip = + (char*)c->p->code_base + last_store_loc; + } + src_preg = tmp_for_vreg(c, 0, src_vreg); + } else { + src_preg = load_oprnd(c, 0, src_vreg); + } + } + if (dest_preg == -1) { + dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; + } + (c->j->convert)(c, from_type, to_type, dest_preg, src_preg); + if (preg_of(c, bb, dest_vreg) == -1) { + /* no dest reg, store result */ + last_store_loc = + (int)((char*)c->p->cur_ip - (char*)c->p->code_base); + store_oprnd(c, 0, dest_vreg); + last_dest_vreg = dest_vreg; + } else { + last_dest_vreg = -1; + } + } break; + case iclass_loadstore: { + /* load/store 3 operand integer insns */ + int dest_vreg = ip->opnds.a3.dest; + int src1_vreg = ip->opnds.a3.src1; + int src2_vreg = ip->opnds.a3.src2; + int dest_preg; + int src1_preg; + int src2_preg; + int store = ((ip->insn_code & 0x10) == 0x10); + int bswap = ((ip->insn_code & 0x20) == 0x20); + int typ = ip->insn_code & 0xf; + + if (last_dest_vreg == src2_vreg) { + /* we only optimize opnd1, switch them */ + /* load store is commutative */ + src1_vreg = ip->opnds.a3.src2; + src2_vreg = ip->opnds.a3.src1; + } + dest_preg = preg_of(c, bb, dest_vreg); + src1_preg = preg_of(c, bb, src1_vreg); + src2_preg = preg_of(c, bb, src2_vreg); + if (src1_preg == -1) { + /* load src1 */ + if ((last_dest_vreg == src1_vreg) && + (tmp_for_vreg(c, 0, src1_vreg) != -1)) { + if (has_single_def_use(c, src1_vreg)) { + if (c->dill_debug) { + printf(" -- Eliminating previous store -- \n"); + } + c->p->cur_ip = + (char*)c->p->code_base + last_store_loc; + } + src1_preg = tmp_for_vreg(c, 0, src1_vreg); + } else { + src1_preg = load_oprnd(c, 0, src1_vreg); + } + } + if (src2_preg == -1) { + /* load src2 */ + src2_preg = load_oprnd(c, 1, src2_vreg); + } + if (store == 0) { + if (dest_preg == -1) { + dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; + } + if (bswap) { + (c->j->bsload)(c, typ, 0, dest_preg, src1_preg, + src2_preg); + } else { + (c->j->load)(c, typ, 0, dest_preg, src1_preg, + src2_preg); + } + if (preg_of(c, bb, dest_vreg) == -1) { + /* no dest reg, store result */ + last_store_loc = + (int)((char*)c->p->cur_ip - (char*)c->p->code_base); + store_oprnd(c, 0, dest_vreg); + last_dest_vreg = dest_vreg; + } else { + last_dest_vreg = -1; + } + } else { + if (dest_preg == -1) { + dest_preg = load_oprnd(c, 2, dest_vreg); + } + (c->j->store)(c, typ, 0, dest_preg, src1_preg, src2_preg); + last_dest_vreg = -1; + } + } break; + case iclass_lea: { + /* load effective address */ + int dest_vreg = ip->opnds.a3i.dest; + int src_vreg = ip->opnds.a3i.src; + intptr_t imm = ip->opnds.a3i.u.imm; + int dest_preg = preg_of(c, bb, dest_vreg); + int src_preg = preg_of(c, bb, src_vreg); + if (src_preg == -1) { + /* load src */ + if ((last_dest_vreg == src_vreg) && + (tmp_for_vreg(c, 0, src_vreg) != -1)) { + if (has_single_def_use(c, src_vreg)) { + if (c->dill_debug) { + printf(" -- Eliminating previous store -- \n"); + } + c->p->cur_ip = + (char*)c->p->code_base + last_store_loc; + } + src_preg = tmp_for_vreg(c, 0, src_vreg); + } else { + src_preg = load_oprnd(c, 0, src_vreg); + } + } + if (dest_preg == -1) { + dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; + } + (c->j->lea)(c, 0, 0, dest_preg, src_preg, imm); + if (preg_of(c, bb, dest_vreg) == -1) { + /* no dest reg, store result */ + last_store_loc = + (int)((char*)c->p->cur_ip - (char*)c->p->code_base); + store_oprnd(c, 0, dest_vreg); + last_dest_vreg = dest_vreg; + } else { + last_dest_vreg = -1; + } + } break; + case iclass_loadstorei: { + /* load store immediate operand integer insns */ + int dest_vreg = ip->opnds.a3i.dest; + int src_vreg = ip->opnds.a3i.src; + intptr_t imm = ip->opnds.a3i.u.imm; + int dest_preg = preg_of(c, bb, dest_vreg); + int src_preg = preg_of(c, bb, src_vreg); + int store = ((ip->insn_code & 0x10) == 0x10); + int bswap = ((ip->insn_code & 0x20) == 0x20); + int typ = ip->insn_code & 0xf; + if (src_preg == -1) { + /* load src */ + if ((last_dest_vreg == src_vreg) && + (tmp_for_vreg(c, 0, src_vreg) != -1)) { + if (has_single_def_use(c, src_vreg)) { + if (c->dill_debug) { + printf(" -- Eliminating previous store -- \n"); + } + c->p->cur_ip = + (char*)c->p->code_base + last_store_loc; + } + src_preg = tmp_for_vreg(c, 0, src_vreg); + } else { + src_preg = load_oprnd(c, 0, src_vreg); + } + } + if (store == 0) { + if (dest_preg == -1) { + dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; + } + if (bswap) { + (c->j->bsloadi)(c, typ, 0, dest_preg, src_preg, imm); + } else { + (c->j->loadi)(c, typ, 0, dest_preg, src_preg, imm); + } + if (preg_of(c, bb, dest_vreg) == -1) { + /* no dest reg, store result */ + last_store_loc = + (int)((char*)c->p->cur_ip - (char*)c->p->code_base); + store_oprnd(c, 0, dest_vreg); + last_dest_vreg = dest_vreg; + } else { + last_dest_vreg = -1; + } + } else { + if (dest_preg == -1) { + dest_preg = load_oprnd(c, 1, dest_vreg); + } + /* a store, dest is the source of the store */ + (c->j->storei)(c, typ, 0, dest_preg, src_preg, imm); + last_dest_vreg = -1; + } + } break; + case iclass_set: { + /* load store immediate operand integer insns */ + int dest_vreg = ip->opnds.a3i.dest; + intptr_t imm = ip->opnds.a3i.u.imm; + int dest_preg = preg_of(c, bb, dest_vreg); + int typ = ip->insn_code & 0xf; + if (dest_preg == -1) { + dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; + } + (c->j->set)(c, typ, 0, dest_preg, imm); + if (preg_of(c, bb, dest_vreg) == -1) { + /* no dest reg, store result */ + last_store_loc = + (int)((char*)c->p->cur_ip - (char*)c->p->code_base); + store_oprnd(c, 0, dest_vreg); + last_dest_vreg = dest_vreg; + } else { + last_dest_vreg = -1; + } + } break; + case iclass_setf: { + /* load store immediate operand integer insns */ + int dest_vreg = ip->opnds.sf.dest; + double imm = ip->opnds.sf.imm; + int dest_preg = preg_of(c, bb, dest_vreg); + int typ = ip->insn_code & 0xf; + if (dest_preg == -1) { + dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; + } + (c->j->setf)(c, typ, 0, dest_preg, imm); + if (preg_of(c, bb, dest_vreg) == -1) { + /* no dest reg, store result */ + last_store_loc = + (int)((char*)c->p->cur_ip - (char*)c->p->code_base); + store_oprnd(c, 0, dest_vreg); + last_dest_vreg = dest_vreg; + } else { + last_dest_vreg = -1; + } + } break; + case iclass_mov: { + /* mov insns */ + int dest_vreg = ip->opnds.a2.dest; + int src_vreg = ip->opnds.a2.src; + int dest_preg = preg_of(c, bb, dest_vreg); + int src_preg = preg_of(c, bb, src_vreg); + int typ = ip->insn_code & 0xf; + if (src_preg == -1) { + /* load src */ + if ((last_dest_vreg == src_vreg) && + (tmp_for_vreg(c, 0, src_vreg) != -1)) { + if (has_single_def_use(c, src_vreg)) { + if (c->dill_debug) { + printf(" -- Eliminating previous store -- \n"); + } + c->p->cur_ip = + (char*)c->p->code_base + last_store_loc; + } + src_preg = tmp_for_vreg(c, 0, src_vreg); + } else { + src_preg = load_oprnd(c, 0, src_vreg); + } + } + if (dest_preg == -1) { + dest_preg = c->p->v_tmps[dill_type_of(c, dest_vreg)][0]; + } + (c->j->mov)(c, typ, 0, dest_preg, src_preg); + if (preg_of(c, bb, dest_vreg) == -1) { + /* no dest reg, store result */ + last_store_loc = + (int)((char*)c->p->cur_ip - (char*)c->p->code_base); + store_oprnd(c, 0, dest_vreg); + last_dest_vreg = dest_vreg; + } else { + last_dest_vreg = -1; + } + } break; + case iclass_reti: { + /* return immediate integer insns */ + intptr_t imm = ip->opnds.a3i.u.imm; + int typ = ip->insn_code & 0xf; + (c->j->reti)(c, typ, 0, imm); + last_dest_vreg = -1; + } break; + case iclass_branch: { + /* branch */ + int br_op = ip->insn_code; + int label = get_new_label(ip->opnds.br.label, ltable); + int src1_vreg = ip->opnds.br.src1; + int src2_vreg = ip->opnds.br.src2; + int src1_preg; + int src2_preg; + /* if (last_dest_vreg == src2_vreg) { + # we should do this is we reverse the sense of the + branch * src1_vreg = ip->opnds.br.src2; src2_vreg = + ip->opnds.br.src1; + } + */ + src1_preg = preg_of(c, bb, src1_vreg); + src2_preg = preg_of(c, bb, src2_vreg); + if (src1_preg == -1) { + /* load src1 */ + if ((last_dest_vreg == src1_vreg) && + (tmp_for_vreg(c, 0, src1_vreg) != -1)) { + if (has_single_def_use(c, src1_vreg)) { + if (c->dill_debug) { + printf(" -- Eliminating previous store -- \n"); + } + c->p->cur_ip = + (char*)c->p->code_base + last_store_loc; + } + src1_preg = tmp_for_vreg(c, 0, src1_vreg); + } else { + src1_preg = load_oprnd(c, 0, src1_vreg); + } + } + if (src2_preg == -1) { + /* load src2 */ + src2_preg = load_oprnd(c, 1, src2_vreg); + } + (c->j->jmp_b)[br_op](c, c->j->b_data[br_op].data1, + c->j->b_data[br_op].data2, src1_preg, + src2_preg, label); + last_dest_vreg = -1; + } break; + case iclass_branchi: { + /* branch immediate */ + int br_op = ip->insn_code; + int label = get_new_label(ip->opnds.bri.label, ltable); + int src1_vreg = ip->opnds.bri.src; + intptr_t imm = ip->opnds.bri.imm_l; + int src1_preg = preg_of(c, bb, src1_vreg); + if (src1_preg == -1) { + /* load src1 */ + if ((last_dest_vreg == src1_vreg) && + (tmp_for_vreg(c, 0, src1_vreg) != -1)) { + if (has_single_def_use(c, src1_vreg)) { + if (c->dill_debug) { + printf(" -- Eliminating previous store -- \n"); + } + c->p->cur_ip = + (char*)c->p->code_base + last_store_loc; + } + src1_preg = tmp_for_vreg(c, 0, src1_vreg); + } else { + src1_preg = load_oprnd(c, 0, src1_vreg); + } + } + + (c->j->jmp_bi)[br_op](c, c->j->b_data[br_op].data1, + c->j->b_data[br_op].data2, src1_preg, imm, + label); + last_dest_vreg = -1; + } break; + case iclass_jump_to_label: { + /* branch immediate */ + int label = get_new_label(ip->opnds.br.label, ltable); + dill_jv(c, label); + last_dest_vreg = -1; + } break; + case iclass_jump_to_reg: { + int src1_vreg = ip->opnds.br.src1; + int src1_preg = preg_of(c, bb, src1_vreg); + if (src1_preg == -1) { + /* load src1 */ + if ((last_dest_vreg == src1_vreg) && + (tmp_for_vreg(c, 0, src1_vreg) != -1)) { + if (has_single_def_use(c, src1_vreg)) { + if (c->dill_debug) { + printf(" -- Eliminating previous store -- \n"); + } + c->p->cur_ip = + (char*)c->p->code_base + last_store_loc; + } + src1_preg = tmp_for_vreg(c, 0, src1_vreg); + } else { + src1_preg = load_oprnd(c, 0, src1_vreg); + } + } + + dill_jp(c, src1_preg); + last_dest_vreg = -1; + } break; + case iclass_jump_to_imm: { + void* imm = ip->opnds.bri.imm_a; + dill_jpi(c, imm); + last_dest_vreg = -1; + } break; + case iclass_special: + dill_special(c, ip->opnds.spec.type, ip->opnds.spec.param); + break; + case iclass_call: { + basic_block next_bb = &vmi->bblist[i + 1]; + int dest_vreg = ip->opnds.calli.src; + int dest_preg = 0; + + int reg = ip->insn_code & 0x10; + int typ = ip->insn_code & 0xf; + int rr; + + if (typ != DILL_V) + dest_preg = preg_of(c, next_bb, dest_vreg); + if (reg != 0) { + intptr_t src1_vreg = ip->opnds.calli.imm_l; + int src1_preg = preg_of(c, bb, (int)src1_vreg); + if (src1_preg == -1) { + /* load src1 */ + if ((last_dest_vreg == src1_vreg) && + (tmp_for_vreg(c, 0, (int)src1_vreg) != -1)) { + if (has_single_def_use(c, (int)src1_vreg)) { + if (c->dill_debug) { + printf( + " -- Eliminating previous store -- " + "\n"); + } + c->p->cur_ip = + (char*)c->p->code_base + last_store_loc; + } + src1_preg = tmp_for_vreg(c, 0, (int)src1_vreg); + } else { + src1_preg = load_oprnd(c, 0, (int)src1_vreg); + } + } + rr = dill_pcallr(c, typ, src1_preg); + } else { + rr = dill_pcall(c, typ, ip->opnds.calli.imm_a, + ip->opnds.calli.xfer_name); + } + if (typ != DILL_V) { + if (preg_of(c, next_bb, dest_vreg) == -1) { + /* no dest reg, store result */ + int offset = offset_of(c, dest_vreg); + int typ = dill_type_of(c, dest_vreg); + if (dest_vreg >= 100) { + c->j->storei(c, typ, 0, rr, c->dill_local_pointer, + offset); + } else { + c->j->storei(c, typ, 0, rr, + c->dill_param_reg_pointer, offset); + } + } else { + /* move return value to result */ + c->j->mov(c, typ, 0, dest_preg, rr); + } + } + pushpop_inuse_regs(c, 1, ip); + last_dest_vreg = -1; + } break; + case iclass_push: { + int typ = ip->insn_code & 0xf; + int src1_vreg = ip->opnds.a1.src; + int src1_preg; + if ((short)ip->opnds.a1.src >= 0) { + /* neg 1 used to signal push init */ + src1_preg = preg_of(c, bb, src1_vreg); + if (src1_preg == -1) { + /* load src1 */ + if ((last_dest_vreg == src1_vreg) && + (tmp_for_vreg(c, 0, src1_vreg) != -1)) { + if (has_single_def_use(c, src1_vreg)) { + if (c->dill_debug) { + printf( + " -- Eliminating previous store -- " + "\n"); + } + c->p->cur_ip = + (char*)c->p->code_base + last_store_loc; + } + src1_preg = tmp_for_vreg(c, 0, src1_vreg); + } else { + src1_preg = load_oprnd(c, 0, src1_vreg); + } + } + } else { + pushpop_inuse_regs(c, 0, ip); + src1_preg = -1; + } + dill_push_arg(c, typ, src1_preg); + last_dest_vreg = -1; + } break; + case iclass_pushi: { + int typ = ip->insn_code & 0xf; + if (typ == DILL_P) { + void* imm = ip->opnds.a3i.u.imm_a; + dill_push_argpi(c, imm); + } else { + intptr_t imm = ip->opnds.a3i.u.imm; + dill_push_argii(c, imm); + } + last_dest_vreg = -1; + } break; + case iclass_pushf: { + int typ = ip->insn_code & 0xf; + double imm = ip->opnds.sf.imm; + c->j->pushfi(c, typ, imm); + last_dest_vreg = -1; + } break; + case iclass_nop: + break; + } + } + foreach_bit(bb->regs_defined, (bv_func)emit_putreg, bb, c); + if (count_verbose) { + int insn_end = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); + printf( + "Basic Block %zd, %d virtual instructions, %d physical " + "instructions\n", + i, insn_count, c->j->count_insn(c, insn_start, insn_end)); + } + } + if ((unsigned)ltable[label_xlate].old_location == + j * sizeof(virtual_insn)) { + dill_mark_label(c, ltable[label_xlate].new_label); + label_xlate++; } if (ltable[label_xlate].old_location != -1) { - printf("Some labels (%d, old loc %d) not placed\n", label_xlate, - ltable[label_xlate].old_location); + printf("Some labels (%d, old loc %d) not placed\n", label_xlate, + ltable[label_xlate].old_location); } } @@ -2530,7 +2566,7 @@ static int live_at_end(basic_block bb, int vreg) { if (vreg >= 100) { - return bit_vec_is_set(bb->live_at_end, vreg - 100); + return bit_vec_is_set(bb->live_at_end, vreg - 100); } return 1; } @@ -2541,7 +2577,7 @@ get_tentative_assign(dill_stream c, int vreg, bit_vec vec) int tmp; dill_raw_getreg(c, &tmp, dill_type_of(c, vreg), DILL_VAR); if (tmp != -1) { - bit_vec_set(vec, tmp); + bit_vec_set(vec, tmp); } return tmp; } @@ -2551,30 +2587,31 @@ put_unless(int bit, dill_stream c, int preg_assigned) { int typ = preg_assigned >> 24; if (bit != (preg_assigned & 0xffffff)) { - dill_raw_putreg(c, bit, typ); + dill_raw_putreg(c, bit, typ); } } static void put_tentative_assigns(dill_stream c, int preg_assigned, bit_vec vec, int typ) { - foreach_bit(vec, (bv_func) put_unless, c, - (void*)(intptr_t)((preg_assigned&0xffffff) | (intptr_t)typ<<24)); + foreach_bit( + vec, (bv_func)put_unless, c, + (void*)(intptr_t)((preg_assigned & 0xffffff) | (intptr_t)typ << 24)); } typedef struct reg_state { dill_stream c; basic_block bb; - preg_info *fpregs; - preg_info *ipregs; + preg_info* fpregs; + preg_info* ipregs; int reg_count; int ret_reg; int ret_vreg; - vreg_info *param_info; + vreg_info* param_info; } reg_state; static void -init_reg_state(reg_state *state, dill_stream c) +init_reg_state(reg_state* state, dill_stream c) { int i; state->fpregs = malloc(sizeof(preg_info)); @@ -2583,770 +2620,775 @@ init_reg_state(reg_state *state, dill_stream c) state->ret_reg = -1; state->ret_vreg = -1; state->param_info = malloc(sizeof(vreg_info) * c->p->c_param_count); - for (i=0; i< c->p->c_param_count; i++) { - if (c->p->c_param_args[i].is_register) { - state->param_info[i].update_in_reg = 0; - state->param_info[i].value_in_mem = 0; - state->param_info[i].in_reg = c->p->c_param_args[i].in_reg; - } else { - state->param_info[i].update_in_reg = 0; - state->param_info[i].value_in_mem = 1; - state->param_info[i].in_reg = -1; - } + for (i = 0; i < c->p->c_param_count; i++) { + if (c->p->c_param_args[i].is_register) { + state->param_info[i].update_in_reg = 0; + state->param_info[i].value_in_mem = 0; + state->param_info[i].in_reg = c->p->c_param_args[i].in_reg; + } else { + state->param_info[i].update_in_reg = 0; + state->param_info[i].value_in_mem = 1; + state->param_info[i].in_reg = -1; + } } } static void -reset_reg_state(reg_state *state) +reset_reg_state(reg_state* state) { int i; - for (i=0; i < state->reg_count; i++) { - state->fpregs[i].holds = state->ipregs[i].holds = -1; + for (i = 0; i < state->reg_count; i++) { + state->fpregs[i].holds = state->ipregs[i].holds = -1; } } static int -update_in_reg(reg_state *s, int vreg) +update_in_reg(reg_state* s, int vreg) { - vreg_info *vregs = s->c->p->vregs; + vreg_info* vregs = s->c->p->vregs; if (vreg >= 100) { - return vregs[vreg - 100].update_in_reg; + return vregs[vreg - 100].update_in_reg; } else { - if (!s->c->p->c_param_args[vreg].is_register) { - return s->param_info[vreg].update_in_reg; - } + if (!s->c->p->c_param_args[vreg].is_register) { + return s->param_info[vreg].update_in_reg; + } } return 0; } static void -set_update_in_reg(reg_state *s, int vreg, int value) +set_update_in_reg(reg_state* s, int vreg, int value) { - vreg_info *vregs = s->c->p->vregs; + vreg_info* vregs = s->c->p->vregs; if (vreg >= 100) { - vregs[vreg - 100].update_in_reg = value; + vregs[vreg - 100].update_in_reg = value; } else { - if (!s->c->p->c_param_args[vreg].is_register) { - s->param_info[vreg].update_in_reg = value; - } + if (!s->c->p->c_param_args[vreg].is_register) { + s->param_info[vreg].update_in_reg = value; + } } } static void -set_value_in_mem(reg_state *s, int vreg, int value) +set_value_in_mem(reg_state* s, int vreg, int value) { - vreg_info *vregs = s->c->p->vregs; + vreg_info* vregs = s->c->p->vregs; if (vreg >= 100) { - vregs[vreg - 100].value_in_mem = value; + vregs[vreg - 100].value_in_mem = value; } else { - if (!s->c->p->c_param_args[vreg].is_register) { - s->param_info[vreg].value_in_mem = value; - } + if (!s->c->p->c_param_args[vreg].is_register) { + s->param_info[vreg].value_in_mem = value; + } } } static int -value_in_mem(reg_state *s, int vreg) +value_in_mem(reg_state* s, int vreg) { - vreg_info *vregs = s->c->p->vregs; + vreg_info* vregs = s->c->p->vregs; if (vreg >= 100) { - return vregs[vreg - 100].value_in_mem; + return vregs[vreg - 100].value_in_mem; } else { - if (!s->c->p->c_param_args[vreg].is_register) { - return s->param_info[vreg].value_in_mem; - } + if (!s->c->p->c_param_args[vreg].is_register) { + return s->param_info[vreg].value_in_mem; + } } return 0; } static void -set_in_reg(reg_state *s, int vreg, int value) +set_in_reg(reg_state* s, int vreg, int value) { - vreg_info *vregs = s->c->p->vregs; + vreg_info* vregs = s->c->p->vregs; if (vreg >= 100) { - vregs[vreg - 100].in_reg = value; + vregs[vreg - 100].in_reg = value; } else { - if (!s->c->p->c_param_args[vreg].is_register) { - s->param_info[vreg].in_reg = value; - } + if (!s->c->p->c_param_args[vreg].is_register) { + s->param_info[vreg].in_reg = value; + } } } static int -get_in_reg(reg_state *s, int vreg) +get_in_reg(reg_state* s, int vreg) { - vreg_info *vregs = s->c->p->vregs; + vreg_info* vregs = s->c->p->vregs; if (vreg >= 100) { - return vregs[vreg - 100].in_reg; + return vregs[vreg - 100].in_reg; } else { - if (!s->c->p->c_param_args[vreg].is_register) { - return s->param_info[vreg].in_reg; - } else { - return s->c->p->c_param_args[vreg].in_reg; - } + if (!s->c->p->c_param_args[vreg].is_register) { + return s->param_info[vreg].in_reg; + } else { + return s->c->p->c_param_args[vreg].in_reg; + } } } static void -set_assign_loc(reg_state *s, int vreg, int value) +set_assign_loc(reg_state* s, int vreg, int value) { - vreg_info *vregs = s->c->p->vregs; + vreg_info* vregs = s->c->p->vregs; if (vreg >= 100) { - vregs[vreg - 100].assign_loc = value; + vregs[vreg - 100].assign_loc = value; } else { - if (!s->c->p->c_param_args[vreg].is_register) { - s->param_info[vreg].assign_loc = value; - } + if (!s->c->p->c_param_args[vreg].is_register) { + s->param_info[vreg].assign_loc = value; + } } } static int -get_assign_loc(reg_state *s, int vreg) +get_assign_loc(reg_state* s, int vreg) { - vreg_info *vregs = s->c->p->vregs; + vreg_info* vregs = s->c->p->vregs; if (vreg >= 100) { - return vregs[vreg - 100].assign_loc; + return vregs[vreg - 100].assign_loc; } else { - if (!s->c->p->c_param_args[vreg].is_register) { - return s->param_info[vreg].assign_loc; - } + if (!s->c->p->c_param_args[vreg].is_register) { + return s->param_info[vreg].assign_loc; + } } return 0; } static void -set_last_use(reg_state *s, int vreg, int value) +set_last_use(reg_state* s, int vreg, int value) { - vreg_info *vregs = s->c->p->vregs; + vreg_info* vregs = s->c->p->vregs; if (vreg >= 100) { - vregs[vreg - 100].last_use = value; + vregs[vreg - 100].last_use = value; } else { - if (!s->c->p->c_param_args[vreg].is_register) { - s->param_info[vreg].last_use = value; - } + if (!s->c->p->c_param_args[vreg].is_register) { + s->param_info[vreg].last_use = value; + } } } static int -get_last_use(reg_state *s, int vreg) +get_last_use(reg_state* s, int vreg) { - vreg_info *vregs = s->c->p->vregs; + vreg_info* vregs = s->c->p->vregs; if (vreg >= 100) { - return vregs[vreg - 100].last_use; + return vregs[vreg - 100].last_use; } else { - if (!s->c->p->c_param_args[vreg].is_register) { - return s->param_info[vreg].last_use; - } + if (!s->c->p->c_param_args[vreg].is_register) { + return s->param_info[vreg].last_use; + } } return 0; } static int -get_use_metric(reg_state *s, int vreg) +get_use_metric(reg_state* s, int vreg) { - vreg_info *vregs = s->c->p->vregs; + vreg_info* vregs = s->c->p->vregs; if (vreg >= 100) { - return vregs[vreg - 100].use_metric; + return vregs[vreg - 100].use_metric; } else { - if (!s->c->p->c_param_args[vreg].is_register) { - return s->param_info[vreg].use_metric; - } + if (!s->c->p->c_param_args[vreg].is_register) { + return s->param_info[vreg].use_metric; + } } return 0; } static void -spill_current_pregs(reg_state *state) +spill_current_pregs(reg_state* state) { dill_stream c = state->c; basic_block bb = state->bb; - preg_info *pregs =state->ipregs; - vreg_info *vregs = state->c->p->vregs; + preg_info* pregs = state->ipregs; + vreg_info* vregs = state->c->p->vregs; int i; int a; - for (a = 0; a < 2 ; a++) { - if (a == 1) { - pregs =state->fpregs; - } - - for (i=0; i < state->reg_count; i++) { - int vreg = pregs[i].holds; - if (vreg >= 100) { - if (update_in_reg(state, vreg) && live_at_end(bb, vreg)) { - int offset = offset_of(c, vreg); - int typ = dill_type_of(c, vreg); - if (offset == 0xdeadbeef) { - /* not previously spilled */ - /* cannot be parameter */ - offset = vregs[vreg-100].offset = dill_local(c, typ); - } - /* spill vreg to memory */ - if (vreg >= 100) { - c->j->storei(c, typ, 0, i, c->dill_local_pointer, offset); - } else { - c->j->storei(c, typ, 0, i, c->dill_param_reg_pointer, offset); - } - set_update_in_reg(state, vreg, 0); - set_value_in_mem(state, vreg, 1); - set_in_reg(state, vreg, -1); - } - } - } + for (a = 0; a < 2; a++) { + if (a == 1) { + pregs = state->fpregs; + } + + for (i = 0; i < state->reg_count; i++) { + int vreg = pregs[i].holds; + if (vreg >= 100) { + if (update_in_reg(state, vreg) && live_at_end(bb, vreg)) { + int offset = offset_of(c, vreg); + int typ = dill_type_of(c, vreg); + if (offset == 0xdeadbeef) { + /* not previously spilled */ + /* cannot be parameter */ + offset = vregs[vreg - 100].offset = dill_local(c, typ); + } + /* spill vreg to memory */ + if (vreg >= 100) { + c->j->storei(c, typ, 0, i, c->dill_local_pointer, + offset); + } else { + c->j->storei(c, typ, 0, i, c->dill_param_reg_pointer, + offset); + } + set_update_in_reg(state, vreg, 0); + set_value_in_mem(state, vreg, 1); + set_in_reg(state, vreg, -1); + } + } + } } } - -static int -select_reg(reg_state *state, int vreg, int loc, int src) +static int +select_reg(reg_state* state, int vreg, int loc, int src) { static int reg_debug = -1; int ret_reg = -1; int old_vreg = -1; - vreg_info *vregs = state->c->p->vregs; + vreg_info* vregs = state->c->p->vregs; dill_stream c = state->c; basic_block bb = state->bb; - preg_info *pregs; - preg_info *fpregs =state->fpregs; - preg_info *ipregs =state->ipregs; + preg_info* pregs; + preg_info* fpregs = state->fpregs; + preg_info* ipregs = state->ipregs; switch (dill_type_of(c, vreg)) { - case DILL_F: case DILL_D: - pregs = state->fpregs; - break; + case DILL_F: + case DILL_D: + pregs = state->fpregs; + break; default: - pregs = state->ipregs; - break; + pregs = state->ipregs; + break; } if (reg_debug == -1) { - reg_debug = (getenv("REG_DEBUG") != NULL); + reg_debug = (getenv("REG_DEBUG") != NULL); } if (vreg < 100) { - /* parameter */ - if (c->p->c_param_args[vreg].is_register) { - return c->p->c_param_args[vreg].in_reg; - } + /* parameter */ + if (c->p->c_param_args[vreg].is_register) { + return c->p->c_param_args[vreg].in_reg; + } } if (vreg == 100) { - return dill_lp(c); + return dill_lp(c); } if (dill_type_of(c, vreg) == DILL_B) { - /* not really using this */ - return -1; + /* not really using this */ + return -1; } if (get_in_reg(state, vreg) != -1) { - ret_reg = get_in_reg(state, vreg); - set_assign_loc(state, vreg, loc); - if (!src) set_update_in_reg(state, vreg, 1); - return ret_reg; + ret_reg = get_in_reg(state, vreg); + set_assign_loc(state, vreg, loc); + if (!src) + set_update_in_reg(state, vreg, 1); + return ret_reg; } else { - int preg; - struct bitv tmp_assigns[6]; - int tentative_assign = -1; - init_bit_vec(&tmp_assigns[0], sizeof(tmp_assigns)); - if (reg_debug) printf("Get assignment for vreg %d\n", vreg); - while ((preg = get_tentative_assign(c, vreg, &tmp_assigns[0])) - != -1) { - int used_vreg; - if (reg_debug) printf("checking preg %d\n", preg); - if (preg >= state->reg_count) { - int i; - fpregs = realloc(fpregs, sizeof(reg_state)*(preg+1)); - ipregs = realloc(ipregs, sizeof(reg_state)*(preg+1)); - state->fpregs = fpregs; - state->ipregs = ipregs; - for (i = state->reg_count; i <= preg; i++) { - ipregs[i].holds = fpregs[i].holds = -1; - } - switch (dill_type_of(c, vreg)) { - case DILL_F: case DILL_D: - pregs = state->fpregs; - break; - default: - pregs = state->ipregs; - break; - } - state->reg_count = preg+1; - } - used_vreg = pregs[preg].holds; - if (used_vreg == -1) { - ret_reg = preg; - if (reg_debug) - printf("preg %d empty, assigning to vreg %d\n", - preg, vreg); - break; - } - if ((get_assign_loc(state, used_vreg) == loc) && src) { - if (reg_debug) - printf("preg %d assigned to vreg %d at this loc\n", - preg, used_vreg); - continue; - } - if ((get_last_use(state, used_vreg) < loc) || - (!src && (get_last_use(state, used_vreg) == loc))) { - ret_reg = preg; - if (reg_debug) - printf("preg %d assigned to vreg %d, but that vreg is done, assigning\n", - preg, used_vreg); - break; - } - if (tentative_assign == -1) { - tentative_assign = preg; - if (reg_debug) - printf("preg %d is new tentative assign\n", preg); - } else if (get_use_metric(state, pregs[tentative_assign].holds) > - get_use_metric(state, used_vreg)) { - if (reg_debug) - printf("preg %d is better tentative assign\n", preg); - tentative_assign = preg; - } else { - if (reg_debug) - printf("previous assign %d was better tentative assign\n", - tentative_assign); - } - } - if (ret_reg == -1) ret_reg = tentative_assign; - put_tentative_assigns(c, -1, &tmp_assigns[0], - dill_type_of(c, vreg)); - } - if (ret_reg != -1) old_vreg = pregs[ret_reg].holds; + int preg; + struct bitv tmp_assigns[6]; + int tentative_assign = -1; + init_bit_vec(&tmp_assigns[0], sizeof(tmp_assigns)); + if (reg_debug) + printf("Get assignment for vreg %d\n", vreg); + while ((preg = get_tentative_assign(c, vreg, &tmp_assigns[0])) != -1) { + int used_vreg; + if (reg_debug) + printf("checking preg %d\n", preg); + if (preg >= state->reg_count) { + int i; + fpregs = realloc(fpregs, sizeof(reg_state) * (preg + 1)); + ipregs = realloc(ipregs, sizeof(reg_state) * (preg + 1)); + state->fpregs = fpregs; + state->ipregs = ipregs; + for (i = state->reg_count; i <= preg; i++) { + ipregs[i].holds = fpregs[i].holds = -1; + } + switch (dill_type_of(c, vreg)) { + case DILL_F: + case DILL_D: + pregs = state->fpregs; + break; + default: + pregs = state->ipregs; + break; + } + state->reg_count = preg + 1; + } + used_vreg = pregs[preg].holds; + if (used_vreg == -1) { + ret_reg = preg; + if (reg_debug) + printf("preg %d empty, assigning to vreg %d\n", preg, vreg); + break; + } + if ((get_assign_loc(state, used_vreg) == loc) && src) { + if (reg_debug) + printf("preg %d assigned to vreg %d at this loc\n", preg, + used_vreg); + continue; + } + if ((get_last_use(state, used_vreg) < loc) || + (!src && (get_last_use(state, used_vreg) == loc))) { + ret_reg = preg; + if (reg_debug) + printf( + "preg %d assigned to vreg %d, but that vreg is done, " + "assigning\n", + preg, used_vreg); + break; + } + if (tentative_assign == -1) { + tentative_assign = preg; + if (reg_debug) + printf("preg %d is new tentative assign\n", preg); + } else if (get_use_metric(state, pregs[tentative_assign].holds) > + get_use_metric(state, used_vreg)) { + if (reg_debug) + printf("preg %d is better tentative assign\n", preg); + tentative_assign = preg; + } else { + if (reg_debug) + printf("previous assign %d was better tentative assign\n", + tentative_assign); + } + } + if (ret_reg == -1) + ret_reg = tentative_assign; + put_tentative_assigns(c, -1, &tmp_assigns[0], dill_type_of(c, vreg)); + } + if (ret_reg != -1) + old_vreg = pregs[ret_reg].holds; if (old_vreg != -1) { - /* if this is not the same as the old assignment */ - if (((get_last_use(state, old_vreg) > loc) || live_at_end(bb, old_vreg))&& - update_in_reg(state, old_vreg)) { - int offset = offset_of(c, old_vreg); - int typ = dill_type_of(c, old_vreg); - set_value_in_mem(state, old_vreg, 1); - set_update_in_reg(state, old_vreg, 0); - if (offset == 0xdeadbeef) { - /* not previously spilled */ - offset = vregs[old_vreg-100].offset = dill_local(c, typ); - } - /* spill vreg to memory */ - if (reg_debug) - printf("Spilling vreg %d to memory, new assignment is %d\n", - old_vreg, vreg); - if (old_vreg >= 100) { - c->j->storei(c, typ, 0, ret_reg, c->dill_local_pointer, offset); - } else { - c->j->storei(c, typ, 0, ret_reg, c->dill_param_reg_pointer, offset); - } - } - set_in_reg(state, old_vreg, -1); + /* if this is not the same as the old assignment */ + if (((get_last_use(state, old_vreg) > loc) || + live_at_end(bb, old_vreg)) && + update_in_reg(state, old_vreg)) { + int offset = offset_of(c, old_vreg); + int typ = dill_type_of(c, old_vreg); + set_value_in_mem(state, old_vreg, 1); + set_update_in_reg(state, old_vreg, 0); + if (offset == 0xdeadbeef) { + /* not previously spilled */ + offset = vregs[old_vreg - 100].offset = dill_local(c, typ); + } + /* spill vreg to memory */ + if (reg_debug) + printf("Spilling vreg %d to memory, new assignment is %d\n", + old_vreg, vreg); + if (old_vreg >= 100) { + c->j->storei(c, typ, 0, ret_reg, c->dill_local_pointer, offset); + } else { + c->j->storei(c, typ, 0, ret_reg, c->dill_param_reg_pointer, + offset); + } + } + set_in_reg(state, old_vreg, -1); } if (src && value_in_mem(state, vreg)) { - int offset = offset_of(c, vreg); - int typ = dill_type_of(c, vreg); - if (offset == 0xdeadbeef) { - /* not previously assigned */ - printf("Virtual register %d used as source but not previously assigned \n", vreg); - offset = 0; - } - if (reg_debug) - printf("Loading vreg %d from offset %d into preg %d\n", - vreg, offset, ret_reg); - if (vreg >= 100) { - c->j->loadi(c, typ, 0, ret_reg, c->dill_local_pointer, offset); - } else { - c->j->loadi(c, typ, 0, ret_reg, c->dill_param_reg_pointer, offset); - } + int offset = offset_of(c, vreg); + int typ = dill_type_of(c, vreg); + if (offset == 0xdeadbeef) { + /* not previously assigned */ + printf( + "Virtual register %d used as source but not previously " + "assigned \n", + vreg); + offset = 0; + } + if (reg_debug) + printf("Loading vreg %d from offset %d into preg %d\n", vreg, + offset, ret_reg); + if (vreg >= 100) { + c->j->loadi(c, typ, 0, ret_reg, c->dill_local_pointer, offset); + } else { + c->j->loadi(c, typ, 0, ret_reg, c->dill_param_reg_pointer, offset); + } } else { - set_update_in_reg(state, vreg, 1); + set_update_in_reg(state, vreg, 1); } - if (ret_reg != -1) pregs[ret_reg].holds = vreg; + if (ret_reg != -1) + pregs[ret_reg].holds = vreg; set_in_reg(state, vreg, ret_reg); set_assign_loc(state, vreg, loc); - if (src && (ret_reg == -1) && !value_in_mem(state,vreg)) { - /* special x86 no float regs case */ - int offset = offset_of(c, vreg); - int typ = dill_type_of(c, vreg); - if (reg_debug) - printf("Special x86 loading vreg %d from offset %d into preg %d\n", - vreg, offset, ret_reg); - if (vreg >= 100) { - c->j->loadi(c, typ, 0, ret_reg, c->dill_local_pointer, offset); - } else { - c->j->loadi(c, typ, 0, ret_reg, c->dill_param_reg_pointer, offset); - } + if (src && (ret_reg == -1) && !value_in_mem(state, vreg)) { + /* special x86 no float regs case */ + int offset = offset_of(c, vreg); + int typ = dill_type_of(c, vreg); + if (reg_debug) + printf("Special x86 loading vreg %d from offset %d into preg %d\n", + vreg, offset, ret_reg); + if (vreg >= 100) { + c->j->loadi(c, typ, 0, ret_reg, c->dill_local_pointer, offset); + } else { + c->j->loadi(c, typ, 0, ret_reg, c->dill_param_reg_pointer, offset); + } } return ret_reg; } static void -update_vreg_info(reg_state *s, basic_block bb, virtual_insn *ip, int loc) +update_vreg_info(reg_state* s, basic_block bb, virtual_insn* ip, int loc) { int i; int used[4]; insn_uses(ip, &used[0]); used[3] = insn_defines(ip); for (i = 0; i < 4; i++) { - if (used[i] == -1) continue; - if (i < 3) { - set_last_use(s, used[i], loc); - } - if (value_in_mem(s, used[i]) == -1) { - set_value_in_mem(s, used[i], loc); /* first use */ - } - if (used[i] >= 100) { - s->c->p->vregs[used[i]-100].use_metric++; - } else { - if (!s->c->p->c_param_args[used[i]].is_register) { - s->param_info[used[i]].use_metric++; - } - } + if (used[i] == -1) + continue; + if (i < 3) { + set_last_use(s, used[i], loc); + } + if (value_in_mem(s, used[i]) == -1) { + set_value_in_mem(s, used[i], loc); /* first use */ + } + if (used[i] >= 100) { + s->c->p->vregs[used[i] - 100].use_metric++; + } else { + if (!s->c->p->c_param_args[used[i]].is_register) { + s->param_info[used[i]].use_metric++; + } + } } } static void -new_emit_insns(dill_stream c, void *insns, label_translation_table ltable, - virtual_mach_info vmi) +new_emit_insns(dill_stream c, + void* insns, + label_translation_table ltable, + virtual_mach_info vmi) { int label_xlate = 0; - int i, j = 0; + size_t i, j = 0; reg_state state; if (count_verbose == -1) { - count_verbose = (getenv ("DILL_COUNTS") != NULL); + count_verbose = (getenv("DILL_COUNTS") != NULL); } init_reg_state(&state, c); state.c = c; - for (j=0; j < c->p->vreg_count; j++) { - if (dill_type_of(c, 100 + j) == DILL_B) { - /* offset is really size, fix that */ - c->p->vregs[j].offset = dill_localb(c, c->p->vregs[j].offset); - } + for (j = 0; j < c->p->vreg_count; j++) { + if (dill_type_of(c, 100 + j) == DILL_B) { + /* offset is really size, fix that */ + c->p->vregs[j].offset = dill_localb(c, c->p->vregs[j].offset); + } } for (i = 0; i < vmi->bbcount; i++) { - basic_block bb = &vmi->bblist[i]; - int insn_count = bb->end - bb->start; - int insn_start; - for (j=0; j < c->p->vreg_count; j++) { - c->p->vregs[j].assign_loc = -1; - c->p->vregs[j].in_reg = -1; - c->p->vregs[j].last_use = -1; - c->p->vregs[j].use_metric = 0; - c->p->vregs[j].update_in_reg = 0; - c->p->vregs[j].value_in_mem = -1; - } - for (j=0; j < c->p->c_param_count; j++) { - state.param_info[j].assign_loc = -1; - state.param_info[j].in_reg = -1; - state.param_info[j].last_use = -1; - state.param_info[j].use_metric = 0; - state.param_info[j].update_in_reg = 0; - state.param_info[j].value_in_mem = -1; - } - for (j = bb->start; j <= bb->end; j++) { - virtual_insn *ip = &((virtual_insn *)insns)[j]; - update_vreg_info(&state, bb, ip, j); - } - for (j=0; j < c->p->vreg_count; j++) { - if (get_last_use(&state, j + 100) == -1) continue; - c->p->vregs[j].use_metric *= insn_count; - c->p->vregs[j].use_metric /= (c->p->vregs[j].last_use - - c->p->vregs[j].value_in_mem +1); - c->p->vregs[j].value_in_mem = - bit_vec_is_set(bb->regs_used, j); - } - for (j=0; j < c->p->c_param_count; j++) { - if (c->p->c_param_args[j].is_register) { - state.param_info[j].update_in_reg = 0; - state.param_info[j].value_in_mem = 0; - state.param_info[j].in_reg = c->p->c_param_args[j].in_reg; - } else { - state.param_info[j].update_in_reg = 0; - state.param_info[j].value_in_mem = 1; - state.param_info[j].in_reg = -1; - } - } - reset_reg_state(&state); - if (c->dill_debug) { - printf("============= Starting basic block %d ===========\n", i); - dump_bb(c, bb, i); - } - insn_start = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); - for (j = bb->start; j <= bb->end; j++) { - virtual_insn *ip; - int vused[3]; - int vdest; - int pused[3]; - int pdest = -1; - int loc; - int i; - int insn_code; - state.bb = bb; - ip = &((virtual_insn *)insns)[j]; - insn_code = ip->insn_code; - loc = (int)((char*)ip - (char*)insns); - while (ltable[label_xlate].old_location == loc) { - dill_mark_label(c, ltable[label_xlate].new_label); - label_xlate++; - } - if (c->dill_debug) { - printf(" v loc(%d) ", loc); - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - if (j == bb->end) { - /* in case we branch out of this puppy */ - spill_current_pregs(&state); - } - - insn_uses(ip, &vused[0]); - vdest = insn_defines(ip); - if (state.ret_vreg != -1) { - if (c->p->vregs[state.ret_vreg - 100].last_use == j) { - /* only used here, use the ret ret */ - c->p->vregs[state.ret_vreg - 100].in_reg = state.ret_reg; - } else { - int tmp = select_reg(&state, state.ret_vreg, j, 0); - ( c->j->mov)(c, dill_type_of(c, state.ret_vreg), 0, tmp, - state.ret_reg); - } - state.ret_vreg = -1; - } - for(i=0; (i < 3) && (vused[i] != -1); i++) { - pused[i] = select_reg(&state, vused[i], j, 1/*src*/); - } - if (vdest != -1) { - pdest = select_reg(&state, vdest, j, 0/*dest*/); - } - if (c->dill_debug && ((vdest != -1) || (vused[0] != -1))) { - printf("\tvregs\t\t"); - if (vdest != -1) { - printf(" %c%d = ", OPND(vdest)); - dill_dump_reg(c, dill_type_of(c, vdest), pdest); - printf("(%d) - ", pdest); - } - for(i=0; (i < 3) && (vused[i] != -1); i++) { - printf(" %c%d = ", OPND(vused[i])); - dill_dump_reg(c, dill_type_of(c, vused[i]), pused[i]); - printf("(%d) - ", pused[i]); - } - printf("\n"); - } - switch(ip->class_code) { - case iclass_arith3: - /* arith 3 operand integer insns */ - ( c->j->jmp_a3)[insn_code](c, - c->j->a3_data[insn_code].data1, - c->j->a3_data[insn_code].data2, - pdest, pused[0], pused[1]); - break; - case iclass_compare: - ( c->j->jmp_c)[insn_code](c, - c->j->c_data[insn_code].data1, - c->j->c_data[insn_code].data2, - pdest, pused[0], pused[1]); - break; - case iclass_arith2: - ( c->j->jmp_a2)[insn_code](c, - c->j->a2_data[insn_code].data1, - c->j->a2_data[insn_code].data2, - pdest, pused[0]); - break; - case iclass_arith3i: - /* arith 3 immediate operand integer insns */ - ( c->j->jmp_a3i)[insn_code](c, - c->j->a3i_data[insn_code].data1, - c->j->a3i_data[insn_code].data2, - pdest, pused[0], - ip->opnds.a3i.u.imm); - break; - case iclass_ret: - ( c->j->ret)(c, ip->insn_code, 0, pused[0]); - break; - case iclass_convert: - /* conversion insns */ - ( c->j->convert)(c, (ip->insn_code >> 4) & 0xf, - ip->insn_code & 0xf, pdest, pused[0]); - break; - case iclass_loadstore: { - /* load/store 3 operand integer insns */ - int store = ((ip->insn_code & 0x10) == 0x10); - int bswap = ((ip->insn_code & 0x20) == 0x20); - int typ = ip->insn_code & 0xf; - if (store == 0) { - if (bswap) { - ( c->j->bsload)(c, typ, 0, pdest, pused[0], pused[1]); - } else { - ( c->j->load)(c, typ, 0, pdest, pused[0], pused[1]); - } - } else { - ( c->j->store)(c, typ, 0, pused[2], pused[0], pused[1]); - } - } - break; - case iclass_lea: { - int offset = (int) ip->opnds.a3i.u.imm + offset_of(c, vused[0]); - int add_code = dill_jmp_addp; - if (offset == 0) { - c->j->mov(c, DILL_P, 0, pdest, dill_lp(c)); - } else { - (c->j->jmp_a3i)[add_code](c, - c->j->a3i_data[add_code].data1, - c->j->a3i_data[add_code].data2, - pdest, dill_lp(c), offset); - } - break; - } - case iclass_loadstorei: - /* load store immediate operand integer insns */ - if ((ip->insn_code & 0x10) == 0) { - if ((ip->insn_code & 0x20) == 0x20) { - ( c->j->bsloadi)(c, ip->insn_code & 0xf, 0, - pdest, pused[0], - ip->opnds.a3i.u.imm); - } else { - ( c->j->loadi)(c, ip->insn_code & 0xf, 0, - pdest, pused[0], - ip->opnds.a3i.u.imm); - } - } else { - /* a store, dest is the source of the store */ - ( c->j->storei)(c, ip->insn_code & 0xf, 0, - pused[1], pused[0], - ip->opnds.a3i.u.imm); - } - break; - case iclass_set: - /* load store immediate operand integer insns */ - ( c->j->set)(c, ip->insn_code & 0xf, 0, pdest, - ip->opnds.a3i.u.imm); - break; - case iclass_setf: - ( c->j->setf)(c, ip->insn_code & 0xf, 0, pdest, - ip->opnds.sf.imm); - break; - case iclass_mov: - ( c->j->mov)(c, ip->insn_code & 0xf, 0, pdest, pused[0]); - break; - case iclass_reti: - /* return immediate integer insns */ - ( c->j->reti)(c, ip->insn_code & 0xf, 0, ip->opnds.a3i.u.imm); - break; - case iclass_branch: - { - /* branch */ - int br_op = ip->insn_code; - int label = get_new_label(ip->opnds.br.label, ltable); - ( c->j->jmp_b)[br_op](c, c->j->b_data[br_op].data1, - c->j->b_data[br_op].data2, - pused[0], pused[1], label); - } - break; - case iclass_branchi: - { - /* branch immediate */ - int br_op = ip->insn_code; - int label = get_new_label(ip->opnds.bri.label, ltable); - intptr_t imm = ip->opnds.bri.imm_l; - ( c->j->jmp_bi)[br_op](c, c->j->b_data[br_op].data1, - c->j->b_data[br_op].data2, - pused[0], imm, label); - } - break; - case iclass_jump_to_label: - { - /* branch immediate */ - int label = get_new_label(ip->opnds.br.label, ltable); - dill_jv(c, label); - } - break; - case iclass_jump_to_reg: - dill_jp(c, pused[0]); - break; - case iclass_jump_to_imm: - dill_jpi(c, ip->opnds.bri.imm_a); - break; - case iclass_special: - dill_special(c, ip->opnds.spec.type, ip->opnds.spec.param); - break; - case iclass_call: - { - int reg = ip->insn_code & 0x10; - int typ = ip->insn_code & 0xf; - int rr; - - if (reg != 0) { - rr = dill_pcallr(c, typ, pused[0]); - } else { - rr = dill_pcall(c, typ, ip->opnds.calli.imm_a, ip->opnds.calli.xfer_name); - } - state.ret_reg = rr; - state.ret_vreg = vdest; - pushpop_inuse_regs(c, 1, ip); - } - break; - case iclass_push: - { - int typ = ip->insn_code & 0xf; - if ((short)ip->opnds.a1.src < 0) { - pushpop_inuse_regs(c, 0, ip); - dill_push_arg(c, typ, (short)ip->opnds.a1.src); - } else { - dill_push_arg(c, typ, pused[0]); - } - } - break; - case iclass_pushi:{ - int typ = ip->insn_code & 0xf; - if (typ == DILL_P) { - void *imm = ip->opnds.a3i.u.imm_a; - dill_push_argpi(c, imm); - } else { - intptr_t imm = ip->opnds.a3i.u.imm; - dill_push_argii(c, imm); - } - break; - } - case iclass_pushf: - c->j->pushfi(c, ip->insn_code & 0xf, ip->opnds.sf.imm); - break; - case iclass_nop: - break; - case iclass_mark_label: - break; - } - if ((pdest == -1) && (vdest != -1)) { - /* special x86 no float regs case */ - int offset = offset_of(c, vdest); - int typ = dill_type_of(c, vdest); - set_value_in_mem(&state, vdest, 1); - set_update_in_reg(&state, vdest, 0); - if (offset == 0xdeadbeef) { - /* not previously spilled */ - offset = c->p->vregs[vdest-100].offset = dill_local(c, typ); - } - /* spill vreg to memory */ - if (vdest >= 100) { - c->j->storei(c, typ, 0, -1, c->dill_local_pointer, offset); - } else { - c->j->storei(c, typ, 0, -1, c->dill_param_reg_pointer, offset); - } - set_in_reg(&state, vdest, -1); - state.ret_vreg = -1; - } - } - spill_current_pregs(&state); - if (count_verbose) { - int insn_end = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); - printf("Basic Block %d, %d virtual instructions, %d physical instructions\n", - i, insn_count, c->j->count_insn(c, insn_start, insn_end)); - } - } - if ((unsigned)ltable[label_xlate].old_location == j * sizeof(virtual_insn)) { - dill_mark_label(c, ltable[label_xlate].new_label); - label_xlate++; + basic_block bb = &vmi->bblist[i]; + int insn_count = (int)(bb->end - bb->start); + int insn_start; + for (j = 0; j < c->p->vreg_count; j++) { + c->p->vregs[j].assign_loc = -1; + c->p->vregs[j].in_reg = -1; + c->p->vregs[j].last_use = -1; + c->p->vregs[j].use_metric = 0; + c->p->vregs[j].update_in_reg = 0; + c->p->vregs[j].value_in_mem = -1; + } + for (j = 0; j < c->p->c_param_count; j++) { + state.param_info[j].assign_loc = -1; + state.param_info[j].in_reg = -1; + state.param_info[j].last_use = -1; + state.param_info[j].use_metric = 0; + state.param_info[j].update_in_reg = 0; + state.param_info[j].value_in_mem = -1; + } + for (j = (size_t)bb->start; j <= (size_t)bb->end; j++) { + virtual_insn* ip = &((virtual_insn*)insns)[j]; + update_vreg_info(&state, bb, ip, (int)j); + } + for (j = 0; j < c->p->vreg_count; j++) { + if (get_last_use(&state, (int)j + 100) == -1) + continue; + c->p->vregs[j].use_metric *= insn_count; + c->p->vregs[j].use_metric /= + (c->p->vregs[j].last_use - c->p->vregs[j].value_in_mem + 1); + c->p->vregs[j].value_in_mem = bit_vec_is_set(bb->regs_used, (int)j); + } + for (j = 0; j < c->p->c_param_count; j++) { + if (c->p->c_param_args[j].is_register) { + state.param_info[j].update_in_reg = 0; + state.param_info[j].value_in_mem = 0; + state.param_info[j].in_reg = c->p->c_param_args[j].in_reg; + } else { + state.param_info[j].update_in_reg = 0; + state.param_info[j].value_in_mem = 1; + state.param_info[j].in_reg = -1; + } + } + reset_reg_state(&state); + if (c->dill_debug) { + printf("============= Starting basic block %zd ===========\n", i); + dump_bb(c, bb, (int)i); + } + insn_start = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); + for (j = (size_t)bb->start; j <= (size_t)bb->end; j++) { + virtual_insn* ip; + int vused[3]; + int vdest; + int pused[3]; + int pdest = -1; + int loc; + int i; + int insn_code; + state.bb = bb; + ip = &((virtual_insn*)insns)[j]; + insn_code = ip->insn_code; + loc = (int)((char*)ip - (char*)insns); + while (ltable[label_xlate].old_location == loc) { + dill_mark_label(c, ltable[label_xlate].new_label); + label_xlate++; + } + if (c->dill_debug) { + printf(" v loc(%d) ", loc); + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + if (j == bb->end) { + /* in case we branch out of this puppy */ + spill_current_pregs(&state); + } + + insn_uses(ip, &vused[0]); + vdest = insn_defines(ip); + if (state.ret_vreg != -1) { + if (c->p->vregs[state.ret_vreg - 100].last_use == j) { + /* only used here, use the ret ret */ + c->p->vregs[state.ret_vreg - 100].in_reg = state.ret_reg; + } else { + int tmp = select_reg(&state, state.ret_vreg, (int)j, 0); + (c->j->mov)(c, dill_type_of(c, state.ret_vreg), 0, tmp, + state.ret_reg); + } + state.ret_vreg = -1; + } + for (i = 0; (i < 3) && (vused[i] != -1); i++) { + pused[i] = select_reg(&state, vused[i], (int)j, 1 /*src*/); + } + if (vdest != -1) { + pdest = select_reg(&state, vdest, (int)j, 0 /*dest*/); + } + if (c->dill_debug && ((vdest != -1) || (vused[0] != -1))) { + printf("\tvregs\t\t"); + if (vdest != -1) { + printf(" %c%d = ", OPND(vdest)); + dill_dump_reg(c, dill_type_of(c, vdest), pdest); + printf("(%d) - ", pdest); + } + for (i = 0; (i < 3) && (vused[i] != -1); i++) { + printf(" %c%d = ", OPND(vused[i])); + dill_dump_reg(c, dill_type_of(c, vused[i]), pused[i]); + printf("(%d) - ", pused[i]); + } + printf("\n"); + } + switch (ip->class_code) { + case iclass_arith3: + /* arith 3 operand integer insns */ + (c->j->jmp_a3)[insn_code](c, c->j->a3_data[insn_code].data1, + c->j->a3_data[insn_code].data2, pdest, + pused[0], pused[1]); + break; + case iclass_compare: + (c->j->jmp_c)[insn_code](c, c->j->c_data[insn_code].data1, + c->j->c_data[insn_code].data2, pdest, + pused[0], pused[1]); + break; + case iclass_arith2: + (c->j->jmp_a2)[insn_code](c, c->j->a2_data[insn_code].data1, + c->j->a2_data[insn_code].data2, pdest, + pused[0]); + break; + case iclass_arith3i: + /* arith 3 immediate operand integer insns */ + (c->j->jmp_a3i)[insn_code](c, c->j->a3i_data[insn_code].data1, + c->j->a3i_data[insn_code].data2, + pdest, pused[0], + ip->opnds.a3i.u.imm); + break; + case iclass_ret: + (c->j->ret)(c, ip->insn_code, 0, pused[0]); + break; + case iclass_convert: + /* conversion insns */ + (c->j->convert)(c, (ip->insn_code >> 4) & 0xf, + ip->insn_code & 0xf, pdest, pused[0]); + break; + case iclass_loadstore: { + /* load/store 3 operand integer insns */ + int store = ((ip->insn_code & 0x10) == 0x10); + int bswap = ((ip->insn_code & 0x20) == 0x20); + int typ = ip->insn_code & 0xf; + if (store == 0) { + if (bswap) { + (c->j->bsload)(c, typ, 0, pdest, pused[0], pused[1]); + } else { + (c->j->load)(c, typ, 0, pdest, pused[0], pused[1]); + } + } else { + (c->j->store)(c, typ, 0, pused[2], pused[0], pused[1]); + } + } break; + case iclass_lea: { + int offset = (int)ip->opnds.a3i.u.imm + offset_of(c, vused[0]); + int add_code = dill_jmp_addp; + if (offset == 0) { + c->j->mov(c, DILL_P, 0, pdest, dill_lp(c)); + } else { + (c->j->jmp_a3i)[add_code](c, c->j->a3i_data[add_code].data1, + c->j->a3i_data[add_code].data2, + pdest, dill_lp(c), offset); + } + break; + } + case iclass_loadstorei: + /* load store immediate operand integer insns */ + if ((ip->insn_code & 0x10) == 0) { + if ((ip->insn_code & 0x20) == 0x20) { + (c->j->bsloadi)(c, ip->insn_code & 0xf, 0, pdest, + pused[0], ip->opnds.a3i.u.imm); + } else { + (c->j->loadi)(c, ip->insn_code & 0xf, 0, pdest, + pused[0], ip->opnds.a3i.u.imm); + } + } else { + /* a store, dest is the source of the store */ + (c->j->storei)(c, ip->insn_code & 0xf, 0, pused[1], + pused[0], ip->opnds.a3i.u.imm); + } + break; + case iclass_set: + /* load store immediate operand integer insns */ + (c->j->set)(c, ip->insn_code & 0xf, 0, pdest, + ip->opnds.a3i.u.imm); + break; + case iclass_setf: + (c->j->setf)(c, ip->insn_code & 0xf, 0, pdest, + ip->opnds.sf.imm); + break; + case iclass_mov: + (c->j->mov)(c, ip->insn_code & 0xf, 0, pdest, pused[0]); + break; + case iclass_reti: + /* return immediate integer insns */ + (c->j->reti)(c, ip->insn_code & 0xf, 0, ip->opnds.a3i.u.imm); + break; + case iclass_branch: { + /* branch */ + int br_op = ip->insn_code; + int label = get_new_label(ip->opnds.br.label, ltable); + (c->j->jmp_b)[br_op](c, c->j->b_data[br_op].data1, + c->j->b_data[br_op].data2, pused[0], + pused[1], label); + } break; + case iclass_branchi: { + /* branch immediate */ + int br_op = ip->insn_code; + int label = get_new_label(ip->opnds.bri.label, ltable); + intptr_t imm = ip->opnds.bri.imm_l; + (c->j->jmp_bi)[br_op](c, c->j->b_data[br_op].data1, + c->j->b_data[br_op].data2, pused[0], imm, + label); + } break; + case iclass_jump_to_label: { + /* branch immediate */ + int label = get_new_label(ip->opnds.br.label, ltable); + dill_jv(c, label); + } break; + case iclass_jump_to_reg: + dill_jp(c, pused[0]); + break; + case iclass_jump_to_imm: + dill_jpi(c, ip->opnds.bri.imm_a); + break; + case iclass_special: + dill_special(c, ip->opnds.spec.type, ip->opnds.spec.param); + break; + case iclass_call: { + int reg = ip->insn_code & 0x10; + int typ = ip->insn_code & 0xf; + int rr; + + if (reg != 0) { + rr = dill_pcallr(c, typ, pused[0]); + } else { + rr = dill_pcall(c, typ, ip->opnds.calli.imm_a, + ip->opnds.calli.xfer_name); + } + state.ret_reg = rr; + state.ret_vreg = vdest; + pushpop_inuse_regs(c, 1, ip); + } break; + case iclass_push: { + int typ = ip->insn_code & 0xf; + if ((short)ip->opnds.a1.src < 0) { + pushpop_inuse_regs(c, 0, ip); + dill_push_arg(c, typ, (short)ip->opnds.a1.src); + } else { + dill_push_arg(c, typ, pused[0]); + } + } break; + case iclass_pushi: { + int typ = ip->insn_code & 0xf; + if (typ == DILL_P) { + void* imm = ip->opnds.a3i.u.imm_a; + dill_push_argpi(c, imm); + } else { + intptr_t imm = ip->opnds.a3i.u.imm; + dill_push_argii(c, imm); + } + break; + } + case iclass_pushf: + c->j->pushfi(c, ip->insn_code & 0xf, ip->opnds.sf.imm); + break; + case iclass_nop: + break; + case iclass_mark_label: + break; + } + if ((pdest == -1) && (vdest != -1)) { + /* special x86 no float regs case */ + int offset = offset_of(c, vdest); + int typ = dill_type_of(c, vdest); + set_value_in_mem(&state, vdest, 1); + set_update_in_reg(&state, vdest, 0); + if (offset == 0xdeadbeef) { + /* not previously spilled */ + offset = c->p->vregs[vdest - 100].offset = + dill_local(c, typ); + } + /* spill vreg to memory */ + if (vdest >= 100) { + c->j->storei(c, typ, 0, -1, c->dill_local_pointer, offset); + } else { + c->j->storei(c, typ, 0, -1, c->dill_param_reg_pointer, + offset); + } + set_in_reg(&state, vdest, -1); + state.ret_vreg = -1; + } + } + spill_current_pregs(&state); + if (count_verbose) { + int insn_end = (int)((char*)c->p->cur_ip - (char*)c->p->code_base); + printf( + "Basic Block %zd, %d virtual instructions, %d physical " + "instructions\n", + i, insn_count, c->j->count_insn(c, insn_start, insn_end)); + } + } + if ((unsigned)ltable[label_xlate].old_location == + j * sizeof(virtual_insn)) { + dill_mark_label(c, ltable[label_xlate].new_label); + label_xlate++; } if (ltable[label_xlate].old_location != -1) { - int loc = (int)((char*)&((virtual_insn *)insns)[j] - ((char*) insns)); - while (ltable[label_xlate].old_location == loc) { - dill_mark_label(c, ltable[label_xlate].new_label); - label_xlate++; - } - if (ltable[label_xlate].old_location != -1) { - printf("Some labels2 (%d, old loc %d name \"%s\") not placed\n", label_xlate, - ltable[label_xlate].old_location, c->p->branch_table.label_name[ltable[label_xlate].old_location]); - } + int loc = (int)((char*)&((virtual_insn*)insns)[j] - ((char*)insns)); + while (ltable[label_xlate].old_location == loc) { + dill_mark_label(c, ltable[label_xlate].new_label); + label_xlate++; + } + if (ltable[label_xlate].old_location != -1) { + printf("Some labels2 (%d, old loc %d name \"%s\") not placed\n", + label_xlate, ltable[label_xlate].old_location, + c->p->branch_table + .label_name[ltable[label_xlate].old_location]); + } } free(state.fpregs); free(state.ipregs); @@ -3354,443 +3396,462 @@ new_emit_insns(dill_stream c, void *insns, label_translation_table ltable, } static void -apply_to_each(dill_stream c, void *insns, virtual_mach_info vmi, - apply_func func) +apply_to_each(dill_stream c, + void* insns, + virtual_mach_info vmi, + apply_func func) { - int i, j = 0; + size_t i, j = 0; for (i = 0; i < vmi->bbcount; i++) { - basic_block bb = &vmi->bblist[i]; - for (j = bb->start; j <= bb->end; j++) { - (func)(c, bb, insns, j); - } + basic_block bb = &vmi->bblist[i]; + for (j = (size_t)bb->start; j <= (size_t)bb->end; j++) { + (func)(c, bb, insns, (int)j); + } } } -static int -const_prop_ip(dill_stream c, basic_block bb, virtual_insn *ip, virtual_insn *set_ip, int one_only) +static int +const_prop_ip(dill_stream c, + basic_block bb, + virtual_insn* ip, + virtual_insn* set_ip, + int one_only) { int set_vreg = set_ip->opnds.a3i.dest; int set_typ = set_ip->insn_code & 0xf; int found = 0; union { - intptr_t imm; - char *imm_a; + intptr_t imm; + char* imm_a; } set; set.imm = set_ip->opnds.a3i.u.imm; set.imm_a = set_ip->opnds.a3i.u.imm_a; - switch(ip->class_code) { - case iclass_arith3: - { - /* arith 3 operand integer insns */ - int dest_vreg = ip->opnds.a3.dest; - int src1_vreg = ip->opnds.a3.src1; - int src2_vreg = ip->opnds.a3.src2; - int insn_code = ip->insn_code; - if ((src1_vreg == set_vreg) && - is_commutative(insn_code)) { - src2_vreg = ip->opnds.a3.src1; - src1_vreg = ip->opnds.a3.src2; - } - if (src2_vreg == set_vreg) { - int typ = ip->insn_code & 0xf; - if (c->dill_debug) { - printf(" Replacing "); - virtual_print_insn(c, NULL, ip); - printf(" with "); - } - ip->class_code = iclass_arith3i; - ip->opnds.a3i.dest = dest_vreg; - ip->opnds.a3i.src = src1_vreg; - if (typ != DILL_P) { - ip->opnds.a3i.u.imm = set.imm; - } else { - ip->opnds.a3i.u.imm_a = set.imm_a; - } - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - found++; - } - } - break; - case iclass_arith2: - { - /* arith 2 operand integer insns */ - int dest_vreg = ip->opnds.a2.dest; - int src_vreg = ip->opnds.a2.src; - int insn_code = ip->insn_code; - if (src_vreg == set_vreg) { - int typ = ip->insn_code & 0xf; - if (c->dill_debug) { - printf(" Replacing "); - virtual_print_insn(c, NULL, ip); - printf(" with "); - } - ip->class_code = iclass_set; - ip->opnds.a3i.dest = dest_vreg; - switch(insn_code) { - case dill_jmp_negi: case dill_jmp_negu: - case dill_jmp_negl: case dill_jmp_negul: - set.imm = -set.imm; - break; - case dill_jmp_comi: case dill_jmp_comu: - case dill_jmp_coml: case dill_jmp_comul: - set.imm = ~set.imm; - break; - case dill_jmp_noti: case dill_jmp_notu: - case dill_jmp_notl: case dill_jmp_notul: - set.imm = !set.imm; - break; - default: - assert(0); - break; - } - if (typ != DILL_P) { - ip->opnds.a3i.u.imm = set.imm; - } else { - ip->opnds.a3i.u.imm_a = set.imm_a; - } - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - found++; - } - break; + switch (ip->class_code) { + case iclass_arith3: { + /* arith 3 operand integer insns */ + int dest_vreg = ip->opnds.a3.dest; + int src1_vreg = ip->opnds.a3.src1; + int src2_vreg = ip->opnds.a3.src2; + int insn_code = ip->insn_code; + if ((src1_vreg == set_vreg) && is_commutative(insn_code)) { + src2_vreg = ip->opnds.a3.src1; + src1_vreg = ip->opnds.a3.src2; + } + if (src2_vreg == set_vreg) { + int typ = ip->insn_code & 0xf; + if (c->dill_debug) { + printf(" Replacing "); + virtual_print_insn(c, NULL, ip); + printf(" with "); + } + ip->class_code = iclass_arith3i; + ip->opnds.a3i.dest = dest_vreg; + ip->opnds.a3i.src = src1_vreg; + if (typ != DILL_P) { + ip->opnds.a3i.u.imm = set.imm; + } else { + ip->opnds.a3i.u.imm_a = set.imm_a; + } + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + found++; + } + } break; + case iclass_arith2: { + /* arith 2 operand integer insns */ + int dest_vreg = ip->opnds.a2.dest; + int src_vreg = ip->opnds.a2.src; + int insn_code = ip->insn_code; + if (src_vreg == set_vreg) { + int typ = ip->insn_code & 0xf; + if (c->dill_debug) { + printf(" Replacing "); + virtual_print_insn(c, NULL, ip); + printf(" with "); + } + ip->class_code = iclass_set; + ip->opnds.a3i.dest = dest_vreg; + switch (insn_code) { + case dill_jmp_negi: + case dill_jmp_negu: + case dill_jmp_negl: + case dill_jmp_negul: + set.imm = -set.imm; + break; + case dill_jmp_comi: + case dill_jmp_comu: + case dill_jmp_coml: + case dill_jmp_comul: + set.imm = ~set.imm; + break; + case dill_jmp_noti: + case dill_jmp_notu: + case dill_jmp_notl: + case dill_jmp_notul: + set.imm = !set.imm; + break; + default: + assert(0); + break; + } + if (typ != DILL_P) { + ip->opnds.a3i.u.imm = set.imm; + } else { + ip->opnds.a3i.u.imm_a = set.imm_a; + } + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + found++; + } + break; } - case iclass_arith3i: - { - /* arith 3 immediate operand integer insns */ - int dest_vreg = ip->opnds.a3i.dest; - int src_vreg = ip->opnds.a3i.src; - int insn_code = ip->insn_code; - union { - intptr_t imm; - char *imm_a; - } u; - u.imm = ip->opnds.a3i.u.imm; - u.imm_a = ip->opnds.a3i.u.imm_a; - if (src_vreg == set_vreg) { - int typ = ip->insn_code & 0xf; - if (c->dill_debug) { - printf(" Replacing "); - virtual_print_insn(c, NULL, ip); - printf(" with "); - } - switch (insn_code) { - case dill_jmp_addi: case dill_jmp_addu: - case dill_jmp_addul: case dill_jmp_addl: - set.imm = set.imm + u.imm; - break; - case dill_jmp_addp: - set.imm_a = set.imm_a + u.imm; - typ = DILL_P; - break; - case dill_jmp_subi: case dill_jmp_subu: - case dill_jmp_subul: case dill_jmp_subl: - set.imm = set.imm - u.imm; - break; - case dill_jmp_subp: - set.imm_a = set.imm_a - u.imm; - typ = DILL_P; - break; - case dill_jmp_muli: case dill_jmp_mulu: - case dill_jmp_mulul: case dill_jmp_mull: - set.imm = set.imm * u.imm; - break; - case dill_jmp_divi: case dill_jmp_divu: - case dill_jmp_divul: case dill_jmp_divl: - set.imm = set.imm / u.imm; - break; - case dill_jmp_modi: case dill_jmp_modu: - case dill_jmp_modul: case dill_jmp_modl: - set.imm = set.imm % u.imm; - break; - case dill_jmp_xori: case dill_jmp_xoru: - case dill_jmp_xorul: case dill_jmp_xorl: - set.imm = set.imm ^ u.imm; - break; - case dill_jmp_andi: case dill_jmp_andu: - case dill_jmp_andul: case dill_jmp_andl: - set.imm = set.imm & u.imm; - break; - case dill_jmp_ori: case dill_jmp_oru: - case dill_jmp_orul: case dill_jmp_orl: - set.imm = set.imm | u.imm; - break; - case dill_jmp_lshi: case dill_jmp_lshu: - case dill_jmp_lshul: case dill_jmp_lshl: - set.imm = set.imm << u.imm; - break; - case dill_jmp_rshi: case dill_jmp_rshu: - case dill_jmp_rshul: case dill_jmp_rshl: - set.imm = set.imm >> u.imm; - break; - default: - assert(0); - } - ip->insn_code = typ; - ip->class_code = iclass_set; - ip->opnds.a3i.dest = dest_vreg; - if (typ != DILL_P) { - ip->opnds.a3i.u.imm = set.imm; - } else { - ip->opnds.a3i.u.imm_a = set.imm_a; - } - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - found++; - } - } - break; - case iclass_ret: - { - /* arith operand integer insns */ - int src_vreg = ip->opnds.a1.src; - if (src_vreg == set_vreg) { - int typ = ip->insn_code & 0xf; - if (c->dill_debug) { - printf(" Replacing "); - virtual_print_insn(c, NULL, ip); - printf(" with "); - } - ip->class_code = iclass_reti; - ip->insn_code = set_typ; - if (typ != DILL_P) { - ip->opnds.a3i.u.imm = set.imm; - } else { - ip->opnds.a3i.u.imm_a = set.imm_a; - } - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - found++; - } - } - break; + case iclass_arith3i: { + /* arith 3 immediate operand integer insns */ + int dest_vreg = ip->opnds.a3i.dest; + int src_vreg = ip->opnds.a3i.src; + int insn_code = ip->insn_code; + union { + intptr_t imm; + char* imm_a; + } u; + u.imm = ip->opnds.a3i.u.imm; + u.imm_a = ip->opnds.a3i.u.imm_a; + if (src_vreg == set_vreg) { + int typ = ip->insn_code & 0xf; + if (c->dill_debug) { + printf(" Replacing "); + virtual_print_insn(c, NULL, ip); + printf(" with "); + } + switch (insn_code) { + case dill_jmp_addi: + case dill_jmp_addu: + case dill_jmp_addul: + case dill_jmp_addl: + set.imm = set.imm + u.imm; + break; + case dill_jmp_addp: + set.imm_a = set.imm_a + u.imm; + typ = DILL_P; + break; + case dill_jmp_subi: + case dill_jmp_subu: + case dill_jmp_subul: + case dill_jmp_subl: + set.imm = set.imm - u.imm; + break; + case dill_jmp_subp: + set.imm_a = set.imm_a - u.imm; + typ = DILL_P; + break; + case dill_jmp_muli: + case dill_jmp_mulu: + case dill_jmp_mulul: + case dill_jmp_mull: + set.imm = set.imm * u.imm; + break; + case dill_jmp_divi: + case dill_jmp_divu: + case dill_jmp_divul: + case dill_jmp_divl: + set.imm = set.imm / u.imm; + break; + case dill_jmp_modi: + case dill_jmp_modu: + case dill_jmp_modul: + case dill_jmp_modl: + set.imm = set.imm % u.imm; + break; + case dill_jmp_xori: + case dill_jmp_xoru: + case dill_jmp_xorul: + case dill_jmp_xorl: + set.imm = set.imm ^ u.imm; + break; + case dill_jmp_andi: + case dill_jmp_andu: + case dill_jmp_andul: + case dill_jmp_andl: + set.imm = set.imm & u.imm; + break; + case dill_jmp_ori: + case dill_jmp_oru: + case dill_jmp_orul: + case dill_jmp_orl: + set.imm = set.imm | u.imm; + break; + case dill_jmp_lshi: + case dill_jmp_lshu: + case dill_jmp_lshul: + case dill_jmp_lshl: + set.imm = set.imm << u.imm; + break; + case dill_jmp_rshi: + case dill_jmp_rshu: + case dill_jmp_rshul: + case dill_jmp_rshl: + set.imm = set.imm >> u.imm; + break; + default: + assert(0); + } + ip->insn_code = typ; + ip->class_code = iclass_set; + ip->opnds.a3i.dest = dest_vreg; + if (typ != DILL_P) { + ip->opnds.a3i.u.imm = set.imm; + } else { + ip->opnds.a3i.u.imm_a = set.imm_a; + } + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + found++; + } + } break; + case iclass_ret: { + /* arith operand integer insns */ + int src_vreg = ip->opnds.a1.src; + if (src_vreg == set_vreg) { + int typ = ip->insn_code & 0xf; + if (c->dill_debug) { + printf(" Replacing "); + virtual_print_insn(c, NULL, ip); + printf(" with "); + } + ip->class_code = iclass_reti; + ip->insn_code = set_typ; + if (typ != DILL_P) { + ip->opnds.a3i.u.imm = set.imm; + } else { + ip->opnds.a3i.u.imm_a = set.imm_a; + } + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + found++; + } + } break; case iclass_convert: { - /* conversion insns */ - int dest_vreg = ip->opnds.a2.dest; - int src_vreg = ip->opnds.a2.src; - int from_type = (ip->insn_code >> 4) & 0xf; - int to_type = ip->insn_code & 0xf; - if (src_vreg == set_vreg) { - if (c->dill_debug) { - printf(" Replacing "); - virtual_print_insn(c, NULL, ip); - printf(" with "); - } - ip->class_code = iclass_set; - ip->insn_code = to_type; - switch(to_type) { - case DILL_C: - ip->opnds.a3i.u.imm = (char)set.imm; - ip->opnds.a3i.dest = dest_vreg; - break; - case DILL_S: - ip->opnds.a3i.u.imm = (short)set.imm; - ip->opnds.a3i.dest = dest_vreg; - case DILL_I: - case DILL_L: - ip->opnds.a3i.u.imm = set.imm; - ip->opnds.a3i.dest = dest_vreg; - break; - case DILL_UC: - ip->opnds.a3i.u.imm = (unsigned char) set.imm; - ip->opnds.a3i.dest = dest_vreg; - break; - case DILL_US: - ip->opnds.a3i.u.imm = (unsigned short) set.imm; - ip->opnds.a3i.dest = dest_vreg; - break; - case DILL_U: - ip->opnds.a3i.u.imm = (unsigned) set.imm; - ip->opnds.a3i.dest = dest_vreg; - break; - case DILL_UL: - ip->opnds.a3i.u.imm = (unsigned long) set.imm; - ip->opnds.a3i.dest = dest_vreg; - break; - case DILL_P: - ip->class_code = iclass_set; - ip->insn_code = DILL_P; - ip->opnds.a3i.u.imm_a = (void*)set.imm; - ip->opnds.a3i.dest = dest_vreg; - break; - case DILL_F: case DILL_D: - ip->class_code = iclass_setf; - ip->insn_code = to_type; - ip->opnds.sf.dest = dest_vreg; - switch(from_type) { - case DILL_UC: case DILL_US: - case DILL_U: case DILL_UL: - ip->opnds.sf.imm = (double) - (unsigned long) set.imm; - break; - default: - ip->opnds.sf.imm = (double) set.imm; - break; - } - } - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - found++; - } - } - break; + /* conversion insns */ + int dest_vreg = ip->opnds.a2.dest; + int src_vreg = ip->opnds.a2.src; + int from_type = (ip->insn_code >> 4) & 0xf; + int to_type = ip->insn_code & 0xf; + if (src_vreg == set_vreg) { + if (c->dill_debug) { + printf(" Replacing "); + virtual_print_insn(c, NULL, ip); + printf(" with "); + } + ip->class_code = iclass_set; + ip->insn_code = to_type; + switch (to_type) { + case DILL_C: + ip->opnds.a3i.u.imm = (char)set.imm; + ip->opnds.a3i.dest = dest_vreg; + break; + case DILL_S: + ip->opnds.a3i.u.imm = (short)set.imm; + ip->opnds.a3i.dest = dest_vreg; + case DILL_I: + case DILL_L: + ip->opnds.a3i.u.imm = set.imm; + ip->opnds.a3i.dest = dest_vreg; + break; + case DILL_UC: + ip->opnds.a3i.u.imm = (unsigned char)set.imm; + ip->opnds.a3i.dest = dest_vreg; + break; + case DILL_US: + ip->opnds.a3i.u.imm = (unsigned short)set.imm; + ip->opnds.a3i.dest = dest_vreg; + break; + case DILL_U: + ip->opnds.a3i.u.imm = (unsigned)set.imm; + ip->opnds.a3i.dest = dest_vreg; + break; + case DILL_UL: + ip->opnds.a3i.u.imm = (uintptr_t)set.imm; + ip->opnds.a3i.dest = dest_vreg; + break; + case DILL_P: + ip->class_code = iclass_set; + ip->insn_code = DILL_P; + ip->opnds.a3i.u.imm_a = (void*)set.imm; + ip->opnds.a3i.dest = dest_vreg; + break; + case DILL_F: + case DILL_D: + ip->class_code = iclass_setf; + ip->insn_code = to_type; + ip->opnds.sf.dest = dest_vreg; + switch (from_type) { + case DILL_UC: + case DILL_US: + case DILL_U: + case DILL_UL: + ip->opnds.sf.imm = (double)(uintptr_t)set.imm; + break; + default: + ip->opnds.sf.imm = (double)set.imm; + break; + } + } + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + found++; + } + } break; case iclass_loadstore: { - /* load/store 3 operand integer insns */ - int dest_vreg = ip->opnds.a3.dest; - int src1_vreg = ip->opnds.a3.src1; - int src2_vreg = ip->opnds.a3.src2; - - if (set_vreg == src1_vreg) { - /* we only optimize src2_VREG, switch them */ - /* load store is commutative */ - src1_vreg = ip->opnds.a3.src2; - src2_vreg = ip->opnds.a3.src1; - } - if (src2_vreg == set_vreg) { - if (c->dill_debug) { - printf(" Replacing "); - virtual_print_insn(c, NULL, ip); - printf(" with "); - } - ip->class_code = iclass_loadstorei; - ip->opnds.a3i.dest = dest_vreg; - ip->opnds.a3i.src = src1_vreg; - ip->opnds.a3i.u.imm = set.imm; - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - found++; - } - } - break; + /* load/store 3 operand integer insns */ + int dest_vreg = ip->opnds.a3.dest; + int src1_vreg = ip->opnds.a3.src1; + int src2_vreg = ip->opnds.a3.src2; + + if (set_vreg == src1_vreg) { + /* we only optimize src2_VREG, switch them */ + /* load store is commutative */ + src1_vreg = ip->opnds.a3.src2; + src2_vreg = ip->opnds.a3.src1; + } + if (src2_vreg == set_vreg) { + if (c->dill_debug) { + printf(" Replacing "); + virtual_print_insn(c, NULL, ip); + printf(" with "); + } + ip->class_code = iclass_loadstorei; + ip->opnds.a3i.dest = dest_vreg; + ip->opnds.a3i.src = src1_vreg; + ip->opnds.a3i.u.imm = set.imm; + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + found++; + } + } break; case iclass_loadstorei: - break; + break; case iclass_lea: - break; + break; case iclass_set: - break; + break; case iclass_setf: - break; + break; case iclass_mov: { - /* mov insns */ - int dest_vreg = ip->opnds.a2.dest; - int src_vreg = ip->opnds.a2.src; - if (src_vreg == set_vreg) { - if (c->dill_debug) { - printf(" Replacing "); - virtual_print_insn(c, NULL, ip); - printf(" with "); - } - ip->class_code = iclass_set; - ip->opnds.a3i.dest = dest_vreg; - ip->opnds.a3i.u.imm = set.imm; - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - found++; - } - } - break; + /* mov insns */ + int dest_vreg = ip->opnds.a2.dest; + int src_vreg = ip->opnds.a2.src; + if (src_vreg == set_vreg) { + if (c->dill_debug) { + printf(" Replacing "); + virtual_print_insn(c, NULL, ip); + printf(" with "); + } + ip->class_code = iclass_set; + ip->opnds.a3i.dest = dest_vreg; + ip->opnds.a3i.u.imm = set.imm; + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + found++; + } + } break; case iclass_compare: case iclass_reti: - break; - case iclass_branch: - { - /* branch */ - int label = ip->opnds.br.label; - int src1_vreg = ip->opnds.br.src1; - int src2_vreg = ip->opnds.br.src2; -/* int br_op = ip->insn_code; - if (last_dest_vreg == src2_vreg) { - # we should do this is we reverse the sense of the branch * - src1_vreg = ip->opnds.br.src2; - src2_vreg = ip->opnds.br.src1; - } -*/ - if (src2_vreg == set_vreg) { - if (c->dill_debug) { - printf(" Replacing "); - virtual_print_insn(c, NULL, ip); - printf(" with "); - } - ip->class_code = iclass_branchi; - ip->opnds.bri.src = src1_vreg; - ip->opnds.bri.label = label; - ip->opnds.bri.imm_l = set.imm; - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - found++; - } - } - break; + break; + case iclass_branch: { + /* branch */ + int label = ip->opnds.br.label; + int src1_vreg = ip->opnds.br.src1; + int src2_vreg = ip->opnds.br.src2; + /* int br_op = ip->insn_code; + if (last_dest_vreg == src2_vreg) { + # we should do this is we reverse the + sense of the branch * src1_vreg = ip->opnds.br.src2; src2_vreg = + ip->opnds.br.src1; + } + */ + if (src2_vreg == set_vreg) { + if (c->dill_debug) { + printf(" Replacing "); + virtual_print_insn(c, NULL, ip); + printf(" with "); + } + ip->class_code = iclass_branchi; + ip->opnds.bri.src = src1_vreg; + ip->opnds.bri.label = label; + ip->opnds.bri.imm_l = set.imm; + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + found++; + } + } break; case iclass_branchi: - break; + break; case iclass_jump_to_label: - break; + break; case iclass_jump_to_reg: - break; + break; case iclass_jump_to_imm: - break; + break; case iclass_special: - break; + break; case iclass_call: - break; - case iclass_push: - { - int src1_vreg = ip->opnds.a1.src; - if (src1_vreg == set_vreg) { - int typ = ip->insn_code & 0xf; - if (c->dill_debug) { - printf(" Replacing "); - virtual_print_insn(c, NULL, ip); - printf(" with "); - } - ip->class_code = iclass_pushi; - if (typ != DILL_P) { - ip->opnds.a3i.u.imm = set.imm; - } else { - ip->opnds.a3i.u.imm_a = set.imm_a; - } - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - found++; - } - } - break; + break; + case iclass_push: { + int src1_vreg = ip->opnds.a1.src; + if (src1_vreg == set_vreg) { + int typ = ip->insn_code & 0xf; + if (c->dill_debug) { + printf(" Replacing "); + virtual_print_insn(c, NULL, ip); + printf(" with "); + } + ip->class_code = iclass_pushi; + if (typ != DILL_P) { + ip->opnds.a3i.u.imm = set.imm; + } else { + ip->opnds.a3i.u.imm_a = set.imm_a; + } + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + found++; + } + } break; case iclass_pushi: - break; + break; case iclass_pushf: - break; + break; case iclass_nop: - break; + break; case iclass_mark_label: - break; + break; } if (found) { - if (set_vreg >= 100) { - c->p->vregs[set_vreg-100].use_info.use_count--; - } - if (c->p->vregs[set_vreg-100].use_info.use_count == 0) { - set_ip->class_code = iclass_nop; - set_unused(c, bb, set_vreg); - } + if (set_vreg >= 100) { + c->p->vregs[set_vreg - 100].use_info.use_count--; + } + if (c->p->vregs[set_vreg - 100].use_info.use_count == 0) { + set_ip->class_code = iclass_nop; + set_unused(c, bb, set_vreg); + } } return found; } @@ -3803,454 +3864,472 @@ is_convert_noop(int insn_code) /* GSE -bug This test should be for *generated* target, not host */ if (sizeof(long) != sizeof(int)) { - return 0; + return 0; } else { - switch(from_type) { - case DILL_I: case DILL_U: - case DILL_L: case DILL_UL: - switch(to_type) { - case DILL_I: case DILL_U: - case DILL_L: case DILL_UL: - return 1; - } - } + switch (from_type) { + case DILL_I: + case DILL_U: + case DILL_L: + case DILL_UL: + switch (to_type) { + case DILL_I: + case DILL_U: + case DILL_L: + case DILL_UL: + return 1; + } + } } return 0; } static void -do_const_prop(dill_stream c, basic_block bb, virtual_insn *insns, int loc) +do_const_prop(dill_stream c, basic_block bb, virtual_insn* insns, int loc) { - virtual_insn *set_ip = &((virtual_insn *)insns)[loc]; - if ((set_ip->class_code == iclass_set) && - has_single_def_use(c, set_ip->opnds.a3i.dest)){ - - int found = 0; - int k; - - if (c->dill_debug) { - printf(" Forward propagating "); - virtual_print_insn(c, NULL, set_ip); - printf("\n"); - } - for (k = loc + 1; ((k <= bb->end) && (!found)); k++) { - virtual_insn *ip = &((virtual_insn *)insns)[k]; - found = const_prop_ip(c, bb, ip, set_ip, 1); - } + virtual_insn* set_ip = &((virtual_insn*)insns)[loc]; + if ((set_ip->class_code == iclass_set) && + has_single_def_use(c, set_ip->opnds.a3i.dest)) { + int found = 0; + int k; + + if (c->dill_debug) { + printf(" Forward propagating "); + virtual_print_insn(c, NULL, set_ip); + printf("\n"); + } + for (k = loc + 1; ((k <= bb->end) && (!found)); k++) { + virtual_insn* ip = &((virtual_insn*)insns)[k]; + found = const_prop_ip(c, bb, ip, set_ip, 1); + } } else if (set_ip->class_code == iclass_set) { - int k; - int vdest = insn_defines(set_ip); - if (c->dill_debug) { - printf(" Forward propagating const "); - virtual_print_insn(c, NULL, set_ip); - printf("\n"); - } - for (k = loc + 1; ((k <= bb->end) && (vdest != insn_defines(&((virtual_insn *)insns)[k]))); k++) { - virtual_insn *ip = &((virtual_insn *)insns)[k]; - const_prop_ip(c, bb, ip, set_ip, 0); - } - if (k <= bb->end) { - /* if we ended in insn_defines, substitute the one that defines it */ - const_prop_ip(c, bb, &((virtual_insn *)insns)[k], set_ip, 0); - } + int k; + int vdest = insn_defines(set_ip); + if (c->dill_debug) { + printf(" Forward propagating const "); + virtual_print_insn(c, NULL, set_ip); + printf("\n"); + } + for (k = loc + 1; ((k <= bb->end) && + (vdest != insn_defines(&((virtual_insn*)insns)[k]))); + k++) { + virtual_insn* ip = &((virtual_insn*)insns)[k]; + const_prop_ip(c, bb, ip, set_ip, 0); + } + if (k <= bb->end) { + /* if we ended in insn_defines, substitute the one that defines it + */ + const_prop_ip(c, bb, &((virtual_insn*)insns)[k], set_ip, 0); + } } else if (((set_ip->class_code == iclass_mov) || - ((set_ip->class_code == iclass_convert) && - is_convert_noop(set_ip->insn_code))) && - has_single_def_use(c, set_ip->opnds.a2.src)){ - /* back propagate move */ - int mov_src = set_ip->opnds.a2.src; - int mov_dest = set_ip->opnds.a2.dest; - int found = 0; - int k; - - if (c->dill_debug) { - printf(" mov propagating "); - virtual_print_insn(c, NULL, set_ip); - printf("\n"); - } - for (k = loc - 1; ((k > bb->start) && (!found)); k--) { - virtual_insn *ip = &((virtual_insn *)insns)[k]; - switch(ip->class_code) { - case iclass_arith3: { - /* arith 3 operand integer insns */ - int dest_vreg = ip->opnds.a3.dest; - if (dest_vreg == mov_src) { - if (c->dill_debug) { - printf(" Replacing "); - virtual_print_insn(c, NULL, ip); - printf(" with "); - } - ip->opnds.a3i.dest = mov_dest; - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - set_ip->class_code = iclass_nop; - set_unused(c, bb, mov_src); - found++; - } - } - break; - case iclass_arith2: { - /* arith 2 operand integer insns */ - int dest_vreg = ip->opnds.a2.dest; - if (dest_vreg == mov_src) { - if (c->dill_debug) { - printf(" Replacing "); - virtual_print_insn(c, NULL, ip); - printf(" with "); - } - ip->opnds.a2.dest = mov_dest; - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - set_ip->class_code = iclass_nop; - set_unused(c, bb, mov_src); - found++; - } - break; - } - case iclass_arith3i: - { - /* arith 3 immediate operand integer insns */ - int dest_vreg = ip->opnds.a3i.dest; - if (dest_vreg == mov_src) { - if (c->dill_debug) { - printf(" Replacing "); - virtual_print_insn(c, NULL, ip); - printf(" with "); - } - ip->opnds.a3i.dest = mov_dest; - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - set_ip->class_code = iclass_nop; - set_unused(c, bb, mov_src); - found++; - } - } - break; - case iclass_ret: - break; - case iclass_convert: { - /* conversion insns */ - int dest_vreg = ip->opnds.a2.dest; - if (dest_vreg == mov_src) { - if (c->dill_debug) { - printf(" Replacing "); - virtual_print_insn(c, NULL, ip); - printf(" with "); - } - ip->opnds.a2.dest = mov_dest; - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - set_ip->class_code = iclass_nop; - set_unused(c, bb, mov_src); - found++; - } - } - break; - case iclass_loadstore: { - int store = ((ip->insn_code & 0x10) == 0x10); - /* load/store 3 operand integer insns */ - int dest_vreg = ip->opnds.a3.dest; - - if (!store && (dest_vreg == mov_src)) { - if (c->dill_debug) { - printf(" Replacing "); - virtual_print_insn(c, NULL, ip); - printf(" with "); - } - ip->opnds.a3i.dest = mov_src; - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - set_ip->class_code = iclass_nop; - set_unused(c, bb, mov_src); - found++; - } - } - break; - case iclass_loadstorei: - break; - case iclass_lea: - break; - case iclass_set: - break; - case iclass_setf: - break; - case iclass_mov: { - /* mov insns */ - int dest_vreg = ip->opnds.a2.dest; - if (dest_vreg == mov_src) { - if (c->dill_debug) { - printf(" Replacing "); - virtual_print_insn(c, NULL, ip); - printf(" with "); - } - ip->opnds.a2.dest = mov_dest; - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - set_ip->class_code = iclass_nop; - set_unused(c, bb, mov_src); - found++; - } - } - break; - case iclass_reti: - case iclass_branch: - case iclass_branchi: - case iclass_compare: - case iclass_jump_to_label: - case iclass_jump_to_reg: - case iclass_jump_to_imm: - case iclass_special: - case iclass_call: - case iclass_push: - case iclass_pushi: - case iclass_pushf: - case iclass_nop: - case iclass_mark_label: - break; - } - } + ((set_ip->class_code == iclass_convert) && + is_convert_noop(set_ip->insn_code))) && + has_single_def_use(c, set_ip->opnds.a2.src)) { + /* back propagate move */ + int mov_src = set_ip->opnds.a2.src; + int mov_dest = set_ip->opnds.a2.dest; + int found = 0; + int k; + + if (c->dill_debug) { + printf(" mov propagating "); + virtual_print_insn(c, NULL, set_ip); + printf("\n"); + } + for (k = loc - 1; ((k > bb->start) && (!found)); k--) { + virtual_insn* ip = &((virtual_insn*)insns)[k]; + switch (ip->class_code) { + case iclass_arith3: { + /* arith 3 operand integer insns */ + int dest_vreg = ip->opnds.a3.dest; + if (dest_vreg == mov_src) { + if (c->dill_debug) { + printf(" Replacing "); + virtual_print_insn(c, NULL, ip); + printf(" with "); + } + ip->opnds.a3i.dest = mov_dest; + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + set_ip->class_code = iclass_nop; + set_unused(c, bb, mov_src); + found++; + } + } break; + case iclass_arith2: { + /* arith 2 operand integer insns */ + int dest_vreg = ip->opnds.a2.dest; + if (dest_vreg == mov_src) { + if (c->dill_debug) { + printf(" Replacing "); + virtual_print_insn(c, NULL, ip); + printf(" with "); + } + ip->opnds.a2.dest = mov_dest; + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + set_ip->class_code = iclass_nop; + set_unused(c, bb, mov_src); + found++; + } + break; + } + case iclass_arith3i: { + /* arith 3 immediate operand integer insns */ + int dest_vreg = ip->opnds.a3i.dest; + if (dest_vreg == mov_src) { + if (c->dill_debug) { + printf(" Replacing "); + virtual_print_insn(c, NULL, ip); + printf(" with "); + } + ip->opnds.a3i.dest = mov_dest; + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + set_ip->class_code = iclass_nop; + set_unused(c, bb, mov_src); + found++; + } + } break; + case iclass_ret: + break; + case iclass_convert: { + /* conversion insns */ + int dest_vreg = ip->opnds.a2.dest; + if (dest_vreg == mov_src) { + if (c->dill_debug) { + printf(" Replacing "); + virtual_print_insn(c, NULL, ip); + printf(" with "); + } + ip->opnds.a2.dest = mov_dest; + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + set_ip->class_code = iclass_nop; + set_unused(c, bb, mov_src); + found++; + } + } break; + case iclass_loadstore: { + int store = ((ip->insn_code & 0x10) == 0x10); + /* load/store 3 operand integer insns */ + int dest_vreg = ip->opnds.a3.dest; + + if (!store && (dest_vreg == mov_src)) { + if (c->dill_debug) { + printf(" Replacing "); + virtual_print_insn(c, NULL, ip); + printf(" with "); + } + ip->opnds.a3i.dest = mov_src; + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + set_ip->class_code = iclass_nop; + set_unused(c, bb, mov_src); + found++; + } + } break; + case iclass_loadstorei: + break; + case iclass_lea: + break; + case iclass_set: + break; + case iclass_setf: + break; + case iclass_mov: { + /* mov insns */ + int dest_vreg = ip->opnds.a2.dest; + if (dest_vreg == mov_src) { + if (c->dill_debug) { + printf(" Replacing "); + virtual_print_insn(c, NULL, ip); + printf(" with "); + } + ip->opnds.a2.dest = mov_dest; + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + set_ip->class_code = iclass_nop; + set_unused(c, bb, mov_src); + found++; + } + } break; + case iclass_reti: + case iclass_branch: + case iclass_branchi: + case iclass_compare: + case iclass_jump_to_label: + case iclass_jump_to_reg: + case iclass_jump_to_imm: + case iclass_special: + case iclass_call: + case iclass_push: + case iclass_pushi: + case iclass_pushf: + case iclass_nop: + case iclass_mark_label: + break; + } + } } } static void -const_propagation(dill_stream c, void *insns, virtual_mach_info vmi) +const_propagation(dill_stream c, void* insns, virtual_mach_info vmi) { apply_to_each(c, insns, vmi, do_const_prop); } static void -do_com_sub_exp(dill_stream c, basic_block bb, virtual_insn *insns, int loc) +do_com_sub_exp(dill_stream c, basic_block bb, virtual_insn* insns, int loc) { - virtual_insn *root_insn = &((virtual_insn *)insns)[loc]; + virtual_insn* root_insn = &((virtual_insn*)insns)[loc]; int def_vreg = insn_defines(root_insn); int do_ldi0_optim = 0; int k; int stop = 0; int used_vregs[3]; int root_is_load; - if (def_vreg == -1) return; + if (def_vreg == -1) + return; insn_uses(root_insn, &used_vregs[0]); - if (used_vregs[0] == -1) return; - if ((root_insn->class_code == iclass_arith3) && - (root_insn->insn_code == dill_jmp_addp)) do_ldi0_optim = 1; - + if (used_vregs[0] == -1) + return; + if ((root_insn->class_code == iclass_arith3) && + (root_insn->insn_code == dill_jmp_addp)) + do_ldi0_optim = 1; + if (def_vreg != -1) { - if ((used_vregs[0] == def_vreg) || (used_vregs[1] == def_vreg) || - (used_vregs[2] == def_vreg)) return; + if ((used_vregs[0] == def_vreg) || (used_vregs[1] == def_vreg) || + (used_vregs[2] == def_vreg)) + return; } - /* + /* * see if we can find an instruction just like ( - * except for dest) this ahead + * except for dest) this ahead */ if (c->dill_debug) { - printf("Try to replace %d ", loc); - virtual_print_insn(c, NULL, root_insn); - printf("\n"); + printf("Try to replace %d ", loc); + virtual_print_insn(c, NULL, root_insn); + printf("\n"); } root_is_load = (((root_insn->class_code == iclass_loadstorei) || - (root_insn->class_code == iclass_loadstore)) && - (((root_insn->insn_code & 0x10) == 0x10) == 0)); + (root_insn->class_code == iclass_loadstore)) && + (((root_insn->insn_code & 0x10) == 0x10) == 0)); for (k = loc + 1; ((k <= bb->end) && (!stop)); k++) { - virtual_insn *ip = &((virtual_insn *)insns)[k]; - int replace_vreg = insn_defines(ip); - int l, stop2, insn_is_store; - /* stop looking if old dest is wiped */ - if (insn_define_test(ip, def_vreg)) stop++; - /* stop looking if srcs become different */ - if (insn_define_test(ip, used_vregs[0])) stop++; - if ((used_vregs[1] != -1) && - insn_define_test(ip, used_vregs[1])) stop++; - if ((used_vregs[2] != -1) && - insn_define_test(ip, used_vregs[2])) stop++; - /* stop looking if this is a load and we're about to pass a store */ - insn_is_store = (((ip->class_code == iclass_loadstorei) || - (ip->class_code == iclass_loadstore)) && - ((ip->insn_code & 0x10) == 0x10)); - if (root_is_load && insn_is_store) stop++; - - if (do_ldi0_optim && - (ip->class_code == iclass_loadstorei) && - (ip->opnds.a3i.src == def_vreg) && - (ip->opnds.a3i.u.imm == 0)) { - int use_target = 1; - /* - * we've found a load immediate with an imm of 0 and with - * a source that is the result of a prior add - * combine them. - */ - if (def_vreg==used_vregs[0]) use_target++; - if (def_vreg==used_vregs[1]) use_target++; - if ((use_target != 0) && - (c->p->vregs[def_vreg-100].use_info.use_count != use_target)) { - continue; - } - if (c->dill_debug) { - printf("load opt, changing - "); - virtual_print_insn(c, NULL, ip); - printf(" - to - "); - } - ip->class_code = iclass_loadstore; - ip->opnds.a3.dest = ip->opnds.a3i.dest; - ip->opnds.a3.src1 = used_vregs[0]; - ip->opnds.a3.src2 = used_vregs[1]; - if (c->dill_debug) { - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - if (def_vreg >= 100) { - c->p->vregs[def_vreg-100].use_info.use_count--; - } - if (c->p->vregs[def_vreg-100].use_info.use_count == (use_target-1)){ - c->p->vregs[def_vreg-100].use_info.def_count--; - if (c->dill_debug) { - printf("load opt eliminating - "); - virtual_print_insn(c, NULL, root_insn); - printf("\n"); - } - root_insn->class_code = iclass_nop; - continue; - } - } - - if (replace_vreg == -1) continue; - if (insn_use_test(ip, def_vreg)) do_ldi0_optim = 0; - - /* - * insn is the same except for dest, make it a noop - * and fixup uses of replace_vreg going forward - */ - if (!insn_same_except_dest(ip, root_insn)) continue; - if (live_at_end(bb, replace_vreg)) continue; - if (c->dill_debug) { - printf("eliminating - - %d - ", k); - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - - if (ip->class_code == iclass_loadstore) { - if (k > loc + 1) { - virtual_insn *previous_ip = &((virtual_insn *)insns)[k - 1]; - if ((previous_ip->class_code == iclass_special) && - (previous_ip->opnds.spec.type == DILL_SEGMENTED_FOLLOWS)) { - /* - * We're eliminating a loadstore and previous was a - * special SEGMENTED_FOLLOWS, kill the special too. - */ - previous_ip->class_code = iclass_nop; - } - } - } - - ip->class_code = iclass_nop; - stop2 = 0; - for (l = k + 1; ((l <= bb->end) && (!stop2)); l++) { - virtual_insn *sub_ip = &((virtual_insn *)insns)[l]; - if (insn_define_test(sub_ip, replace_vreg)) { - stop2++; - } - if (!insn_use_test(sub_ip, replace_vreg)) continue; - if (c->dill_debug) { - printf(" Reg %d forward subst - Replacing %d ", - def_vreg, l); - virtual_print_insn(c, NULL, sub_ip); - printf(" with "); - } - replace_insn_src(sub_ip, replace_vreg, def_vreg); - set_used(c, def_vreg); - if (c->dill_debug) { - virtual_print_insn(c, NULL, sub_ip); - printf("\n"); - } - } + virtual_insn* ip = &((virtual_insn*)insns)[k]; + int replace_vreg = insn_defines(ip); + int l, stop2, insn_is_store; + /* stop looking if old dest is wiped */ + if (insn_define_test(ip, def_vreg)) + stop++; + /* stop looking if srcs become different */ + if (insn_define_test(ip, used_vregs[0])) + stop++; + if ((used_vregs[1] != -1) && insn_define_test(ip, used_vregs[1])) + stop++; + if ((used_vregs[2] != -1) && insn_define_test(ip, used_vregs[2])) + stop++; + /* stop looking if this is a load and we're about to pass a store */ + insn_is_store = (((ip->class_code == iclass_loadstorei) || + (ip->class_code == iclass_loadstore)) && + ((ip->insn_code & 0x10) == 0x10)); + if (root_is_load && insn_is_store) + stop++; + + if (do_ldi0_optim && (ip->class_code == iclass_loadstorei) && + (ip->opnds.a3i.src == def_vreg) && (ip->opnds.a3i.u.imm == 0)) { + int use_target = 1; + /* + * we've found a load immediate with an imm of 0 and with + * a source that is the result of a prior add + * combine them. + */ + if (def_vreg == used_vregs[0]) + use_target++; + if (def_vreg == used_vregs[1]) + use_target++; + if ((use_target != 0) && + (c->p->vregs[def_vreg - 100].use_info.use_count != + use_target)) { + continue; + } + if (c->dill_debug) { + printf("load opt, changing - "); + virtual_print_insn(c, NULL, ip); + printf(" - to - "); + } + ip->class_code = iclass_loadstore; + ip->opnds.a3.dest = ip->opnds.a3i.dest; + ip->opnds.a3.src1 = used_vregs[0]; + ip->opnds.a3.src2 = used_vregs[1]; + if (c->dill_debug) { + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + if (def_vreg >= 100) { + c->p->vregs[def_vreg - 100].use_info.use_count--; + } + if (c->p->vregs[def_vreg - 100].use_info.use_count == + (use_target - 1)) { + c->p->vregs[def_vreg - 100].use_info.def_count--; + if (c->dill_debug) { + printf("load opt eliminating - "); + virtual_print_insn(c, NULL, root_insn); + printf("\n"); + } + root_insn->class_code = iclass_nop; + continue; + } + } + + if (replace_vreg == -1) + continue; + if (insn_use_test(ip, def_vreg)) + do_ldi0_optim = 0; + + /* + * insn is the same except for dest, make it a noop + * and fixup uses of replace_vreg going forward + */ + if (!insn_same_except_dest(ip, root_insn)) + continue; + if (live_at_end(bb, replace_vreg)) + continue; + if (c->dill_debug) { + printf("eliminating - - %d - ", k); + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + + if (ip->class_code == iclass_loadstore) { + if (k > loc + 1) { + virtual_insn* previous_ip = &((virtual_insn*)insns)[k - 1]; + if ((previous_ip->class_code == iclass_special) && + (previous_ip->opnds.spec.type == DILL_SEGMENTED_FOLLOWS)) { + /* + * We're eliminating a loadstore and previous was a + * special SEGMENTED_FOLLOWS, kill the special too. + */ + previous_ip->class_code = iclass_nop; + } + } + } + + ip->class_code = iclass_nop; + stop2 = 0; + for (l = k + 1; ((l <= bb->end) && (!stop2)); l++) { + virtual_insn* sub_ip = &((virtual_insn*)insns)[l]; + if (insn_define_test(sub_ip, replace_vreg)) { + stop2++; + } + if (!insn_use_test(sub_ip, replace_vreg)) + continue; + if (c->dill_debug) { + printf(" Reg %d forward subst - Replacing %d ", def_vreg, l); + virtual_print_insn(c, NULL, sub_ip); + printf(" with "); + } + replace_insn_src(sub_ip, replace_vreg, def_vreg); + set_used(c, def_vreg); + if (c->dill_debug) { + virtual_print_insn(c, NULL, sub_ip); + printf("\n"); + } + } } if (c->dill_debug) { - printf("stopped \n"); + printf("stopped \n"); } } static void -CSE_elimination(dill_stream c, void *insns, virtual_mach_info vmi) +CSE_elimination(dill_stream c, void* insns, virtual_mach_info vmi) { apply_to_each(c, insns, vmi, do_com_sub_exp); } static void -kill_dead(dill_stream c, basic_block bb, virtual_insn *insns, int loc) +kill_dead(dill_stream c, basic_block bb, virtual_insn* insns, int loc) { - virtual_insn *root_insn = &((virtual_insn *)insns)[loc]; + virtual_insn* root_insn = &((virtual_insn*)insns)[loc]; int def_vreg = insn_defines(root_insn); int k; int stop = 0; - if (root_insn->class_code == iclass_call) return; + if (root_insn->class_code == iclass_call) + return; if (def_vreg >= 100) { - if (c->p->vregs[def_vreg-100].use_info.use_count == 0) { - root_insn->class_code = iclass_nop; - set_unused(c, bb, def_vreg); - } + if (c->p->vregs[def_vreg - 100].use_info.use_count == 0) { + root_insn->class_code = iclass_nop; + set_unused(c, bb, def_vreg); + } } for (k = loc + 1; ((k <= bb->end) && (!stop)); k++) { - virtual_insn *ip = &((virtual_insn *)insns)[k]; - int used_vregs[3]; - insn_uses(ip, &used_vregs[0]); - if ((def_vreg == used_vregs[0]) || (def_vreg == used_vregs[1]) - ||(def_vreg == used_vregs[2])) { - stop++; - } else { - if (insn_defines(ip) == def_vreg) { - /* got another define before a use, kill the first */ - root_insn->class_code = iclass_nop; - stop++; - } - } - } - + virtual_insn* ip = &((virtual_insn*)insns)[k]; + int used_vregs[3]; + insn_uses(ip, &used_vregs[0]); + if ((def_vreg == used_vregs[0]) || (def_vreg == used_vregs[1]) || + (def_vreg == used_vregs[2])) { + stop++; + } else { + if (insn_defines(ip) == def_vreg) { + /* got another define before a use, kill the first */ + root_insn->class_code = iclass_nop; + stop++; + } + } + } } static void -kill_dead_regs(dill_stream c, void *insns, virtual_mach_info vmi) +kill_dead_regs(dill_stream c, void* insns, virtual_mach_info vmi) { apply_to_each(c, insns, vmi, kill_dead); /* kill unused arguments */ - while ((c->p->c_param_count>0) && (c->p->c_param_args[c->p->c_param_count-1].used == 0)) { - c->p->c_param_count--; + while ((c->p->c_param_count > 0) && + (c->p->c_param_args[c->p->c_param_count - 1].used == 0)) { + c->p->c_param_count--; } } extern void -virtual_proc_start(dill_stream c, char *subr_name, int arg_count, - arg_info_list args, dill_reg *arglist) +virtual_proc_start(dill_stream c, + char* subr_name, + int arg_count, + arg_info_list args, + dill_reg* arglist) { int i; virtual_mach_info vmi = (virtual_mach_info)c->p->mach_info; vmi->arg_info = args; vmi->prefix_code_start = -1; for (i = 0; i < arg_count; i++) { - c->p->c_param_args[i].in_reg = i; + c->p->c_param_args[i].in_reg = i; } } -extern void dill_virtual_init(dill_stream c); +extern void +dill_virtual_init(dill_stream c); static void fill_label_translation(dill_stream c, label_translation_table lt) { int i = 0; while (lt[i].old_label != -1) { - lt[i].new_label = dill_alloc_label(c, NULL); - i++; + lt[i].new_label = dill_alloc_label(c, NULL); + i++; } } @@ -4259,27 +4338,27 @@ build_label_translation(dill_stream c) { int i; int label_count = c->p->branch_table.next_label; - label_translation_table l = malloc(sizeof(struct label_translation) * - (label_count + 1)); - for(i = 0; i < label_count; i++) { - l[i].old_label = i; - l[i].old_location = c->p->branch_table.label_locs[i]; + label_translation_table l = + malloc(sizeof(struct label_translation) * (label_count + 1)); + for (i = 0; i < label_count; i++) { + l[i].old_label = i; + l[i].old_location = c->p->branch_table.label_locs[i]; } /* Good old reliable insertion sort */ { - int i, curIdx; - struct label_translation tmp; - - for(curIdx = 0; curIdx < label_count; curIdx++) { - for(i = curIdx+1; i < label_count; i++) { - if(l[curIdx].old_location > l[i].old_location) { - /* swap them */ - tmp = l[curIdx]; - l[curIdx] = l[i]; - l[i] = tmp; - } + int i, curIdx; + struct label_translation tmp; + + for (curIdx = 0; curIdx < label_count; curIdx++) { + for (i = curIdx + 1; i < label_count; i++) { + if (l[curIdx].old_location > l[i].old_location) { + /* swap them */ + tmp = l[curIdx]; + l[curIdx] = l[i]; + l[i] = tmp; + } + } } - } } l[label_count].old_location = -1; l[label_count].old_label = -1; @@ -4290,27 +4369,31 @@ build_label_translation(dill_stream c) static int virtual_insn_count(dill_stream c) { - virtual_insn *insn = (virtual_insn*)c->p->code_base; + virtual_insn* insn = (virtual_insn*)c->p->code_base; int count = 0; - for (; insn < (virtual_insn *)c->p->cur_ip; insn++) { - if (insn->class_code != iclass_nop) count++; + for (; insn < (virtual_insn*)c->p->cur_ip; insn++) { + if (insn->class_code != iclass_nop) + count++; } return count; } -void init_code_block(dill_stream s); - +void +init_code_block(dill_stream s); + extern void -virtual_reti(dill_stream s, int type, int junk, long imm); +virtual_reti(dill_stream s, int type, int junk, IMM_TYPE imm); -extern void dill_begin_prefix_code(dill_stream s) +extern void +dill_begin_prefix_code(dill_stream s) { virtual_mach_info vmi = (virtual_mach_info)s->p->mach_info; /* have to be in virtual mode */ - assert(s->j->proc_start == (dill_mach_proc_start)virtual_proc_start); + assert(s->j->proc_start == (dill_mach_proc_start)virtual_proc_start); /* insert a return, so we don't fall into prefix code */ virtual_reti(s, DILL_I, 0, 0); - vmi->prefix_code_start = (int) (s->p->cur_ip - s->p->code_base) / sizeof(virtual_insn); + vmi->prefix_code_start = + (int)(s->p->cur_ip - s->p->code_base) / sizeof(virtual_insn); } static dill_foreign_cg_func dill_foreign_cg = NULL; @@ -4330,49 +4413,55 @@ virtual_do_end(dill_stream s, int package) static int do_emulation = -1; virtual_mach_info vmi = (virtual_mach_info)s->p->mach_info; - void *insns = s->p->code_base; - void *code_end = s->p->cur_ip; - void *prefix_begin = (char*)insns + (vmi->prefix_code_start * sizeof(virtual_insn));; + void* insns = s->p->code_base; + void* code_end = s->p->cur_ip; + void* prefix_begin = + (char*)insns + (vmi->prefix_code_start * sizeof(virtual_insn)); + ; label_translation_table ltable; int virtual_local_pointer = s->dill_local_pointer; if (dill_verbose == -1) { - dill_verbose = (getenv ("DILL_VERBOSE") != NULL); - no_optimize = (getenv ("DILL_NOOPTIMIZE") != NULL); - old_reg_alloc = (getenv ("DILL_OLD_REGS") != NULL); - do_emulation = (getenv("DILL_DO_EMULATION") != NULL); + dill_verbose = (getenv("DILL_VERBOSE") != NULL); + no_optimize = (getenv("DILL_NOOPTIMIZE") != NULL); + old_reg_alloc = (getenv("DILL_OLD_REGS") != NULL); + do_emulation = (getenv("DILL_DO_EMULATION") != NULL); #ifdef EMULATION_ONLY - do_emulation = 1; + do_emulation = 1; #endif } - if (vmi->prefix_code_start == -1) prefix_begin = code_end; + s->p->virtual.code_base = s->p->code_base; + if (vmi->prefix_code_start == -1) + prefix_begin = code_end; build_bbs(s, insns, prefix_begin, code_end); if (!no_optimize) { - if (count_verbose == -1) { - count_verbose = (getenv ("DILL_COUNTS") != NULL); - } - if (count_verbose == 1) { - printf("Prior to optimization, %d non-null virtual insns\n", - virtual_insn_count(s)); - } - const_propagation(s, insns, vmi); - if (count_verbose == 1) { - printf("After constant propagation, %d non-null virtual insns\n", - virtual_insn_count(s)); - } - CSE_elimination(s, insns, vmi); - if (count_verbose == 1) { - printf("After duplicate instruction elimination (CSE-lite), %d non-null virtual insns\n", - virtual_insn_count(s)); - } - reset_use_def_count(s, insns, vmi); - kill_dead_regs(s, insns, vmi); + if (count_verbose == -1) { + count_verbose = (getenv("DILL_COUNTS") != NULL); + } + if (count_verbose == 1) { + printf("Prior to optimization, %d non-null virtual insns\n", + virtual_insn_count(s)); + } + const_propagation(s, insns, vmi); + if (count_verbose == 1) { + printf("After constant propagation, %d non-null virtual insns\n", + virtual_insn_count(s)); + } + CSE_elimination(s, insns, vmi); + if (count_verbose == 1) { + printf( + "After duplicate instruction elimination (CSE-lite), %d " + "non-null virtual insns\n", + virtual_insn_count(s)); + } + reset_use_def_count(s, insns, vmi); + kill_dead_regs(s, insns, vmi); } if (dill_verbose) { - dump_bbs(s); - s->dill_debug = 1; + dump_bbs(s); + s->dill_debug = 1; } s->p->virtual.mach_jump = s->j; s->p->virtual.mach_reset = s->p->mach_reset; @@ -4383,64 +4472,66 @@ virtual_do_end(dill_stream s, int package) if (do_emulation) { #ifdef BUILD_EMULATOR - /* do a return, just in case it's missing */ - if (vmi->prefix_code_start == -1) { - dill_retii(s,0); - s->p->virtual.cur_ip = s->p->cur_ip; - } - setup_VM_proc(s); + /* do a return, just in case it's missing */ + if (vmi->prefix_code_start == -1) { + dill_retii(s, 0); + s->p->virtual.cur_ip = s->p->cur_ip; + } + setup_VM_proc(s); #endif - free_bbs(vmi); - s->p->mach_reset = dill_virtual_init; + free_bbs(vmi); + s->p->mach_reset = dill_virtual_init; } else if (dill_foreign_cg) { - (dill_foreign_cg)(s, (virtual_insn *)s->p->code_base, (virtual_insn *)s->p->cur_ip); + (dill_foreign_cg)(s, (virtual_insn*)s->p->code_base, + (virtual_insn*)s->p->cur_ip); } else { - s->j = s->p->native.mach_jump; - s->p->mach_reset = s->p->native.mach_reset; - s->p->mach_info = s->p->native.mach_info; - s->p->code_base = s->p->native.code_base; - s->p->native.code_base = NULL; - s->p->native.mach_info = NULL; - if (s->p->code_base == NULL) { - init_code_block(s); - s->p->native.code_base = s->p->code_base; - s->p->native.code_limit = s->p->code_limit; - } - s->p->cur_ip = s->p->code_base; - s->p->code_limit = s->p->native.code_limit; - - s->p->native_mach_reset(s); - ltable = build_label_translation(s); - (s->j->proc_start)(s, "no name", s->p->c_param_count, - vmi->arg_info, (void*)0); - fill_label_translation(s, ltable); - if (old_reg_alloc) { - do_register_assign(s, insns, code_end, virtual_local_pointer, vmi); - emit_insns(s, insns, ltable, vmi); - } else { - new_emit_insns(s, insns, ltable, vmi); - } - free_bbs(vmi); - free(ltable); - if (package) { - s->j->package_end(s); - } else { - dill_exec_handle h; - h = dill_finalize(s); - dill_free_handle(h); - } - s->j = s->p->native.mach_jump; - s->p->native.mach_reset = s->p->mach_reset; - s->p->native.mach_info = s->p->mach_info; - s->p->native.code_base = s->p->code_base; - s->p->native.cur_ip = s->p->cur_ip; - s->p->native.code_limit = s->p->code_limit; - if (!package) s->p->code_base = NULL; - s->p->mach_info = NULL; - s->p->mach_reset = dill_virtual_init; + s->j = s->p->native.mach_jump; + s->p->mach_reset = s->p->native.mach_reset; + s->p->mach_info = s->p->native.mach_info; + s->p->code_base = s->p->native.code_base; + s->p->native.code_base = NULL; + s->p->native.mach_info = NULL; + if (s->p->code_base == NULL) { + init_code_block(s); + s->p->native.code_base = s->p->code_base; + s->p->native.code_limit = s->p->code_limit; + } + s->p->cur_ip = s->p->code_base; + s->p->code_limit = s->p->native.code_limit; + + s->p->native_mach_reset(s); + ltable = build_label_translation(s); + (s->j->proc_start)(s, "no name", s->p->c_param_count, vmi->arg_info, + (void*)0); + fill_label_translation(s, ltable); + if (old_reg_alloc) { + do_register_assign(s, insns, code_end, virtual_local_pointer, vmi); + emit_insns(s, insns, ltable, vmi); + } else { + new_emit_insns(s, insns, ltable, vmi); + } + free_bbs(vmi); + free(ltable); + if (package) { + s->j->package_end(s); + } else { + dill_exec_handle h; + h = dill_finalize(s); + dill_free_handle(h); + } + s->j = s->p->native.mach_jump; + s->p->native.mach_reset = s->p->mach_reset; + s->p->native.mach_info = s->p->mach_info; + s->p->native.code_base = s->p->code_base; + s->p->native.cur_ip = s->p->cur_ip; + s->p->native.code_limit = s->p->code_limit; + if (!package) + s->p->code_base = NULL; + s->p->mach_info = NULL; + s->p->mach_reset = dill_virtual_init; } if (dill_verbose) { - dill_dump(s); + dill_dump(s); } } @@ -4456,45 +4547,49 @@ virtual_package_end(dill_stream c) virtual_do_end(c, 1 /* package */); } - extern dill_exec_ctx dill_get_exec_context(dill_stream c) { dill_exec_ctx ec = malloc(sizeof(struct dec)); - int vreg_count = c->p->vreg_count + 1; /* always at least 1 */ + int vreg_count = c->p->vreg_count + 1; /* always at least 1 */ int j; memset(ec, 0, sizeof(struct dec)); ec->dc = c; - if (vreg_count < 1) vreg_count = 1; + if (vreg_count < 1) + vreg_count = 1; ec->r = malloc(sizeof(ec->r[0]) * vreg_count); if (c->p->save_param_count >= 0) { - ec->p = malloc(sizeof(ec->p[0]) * c->p->save_param_count); + ec->p = malloc(sizeof(ec->p[0]) * c->p->save_param_count); } else { - ec->p = malloc(1); + ec->p = malloc(1); } ec->client_data_count = 0; ec->out_param_count = 0; ec->out_params = NULL; - for (j=0; j < c->p->vreg_count; j++) { - if (dill_type_of(c, 100 + j) == DILL_B) { - /* offset is really size, fix that */ - if (c->p->vregs[j].offset > 0) { - /* this is only used for interpretation */ - ec->r[j].u.p.p = malloc(c->p->vregs[j].offset); - } - /* GSE this is leaked!!!! must fix... !!!! */ - } + for (j = 0; j < c->p->vreg_count; j++) { + if (dill_type_of(c, 100 + j) == DILL_B) { + /* offset is really size, fix that */ + if (c->p->vregs[j].offset > 0) { + /* this is only used for interpretation */ + ec->r[j].u.p.p = malloc(c->p->vregs[j].offset); + } + /* GSE this is leaked!!!! must fix... !!!! */ + } } return ec; } - + extern void dill_free_exec_context(dill_exec_ctx ec) { - if (ec->r) free(ec->r); - if (ec->p) free(ec->p); - if (ec->client_data) free(ec->client_data); - if (ec->out_params) free(ec->out_params); + if (ec->r) + free(ec->r); + if (ec->p) + free(ec->p); + if (ec->client_data) + free(ec->client_data); + if (ec->out_params) + free(ec->out_params); free(ec); } @@ -4502,17 +4597,18 @@ extern void dill_assoc_client_data(dill_exec_ctx ec, int key, IMM_TYPE value) { int i = 0; - for (i=0; i < ec->client_data_count; i++) { - if (ec->client_data[i].key == key) { - ec->client_data[i].value = value; - return; - } + for (i = 0; i < ec->client_data_count; i++) { + if (ec->client_data[i].key == key) { + ec->client_data[i].value = value; + return; + } } if (ec->client_data_count == 0) { - ec->client_data = malloc(sizeof(struct client_data_struct)); + ec->client_data = malloc(sizeof(struct client_data_struct)); } else { - ec->client_data = realloc(ec->client_data, sizeof(struct client_data_struct) * - (ec->client_data_count + 1)); + ec->client_data = + realloc(ec->client_data, sizeof(struct client_data_struct) * + (ec->client_data_count + 1)); } ec->client_data[ec->client_data_count].key = key; ec->client_data[ec->client_data_count++].value = value; @@ -4522,11 +4618,10 @@ extern IMM_TYPE dill_get_client_data(dill_exec_ctx ec, int key) { int i = 0; - for (i=0; i < ec->client_data_count; i++) { - if (ec->client_data[i].key == key) { - return ec->client_data[i].value; - } + for (i = 0; i < ec->client_data_count; i++) { + if (ec->client_data[i].key == key) { + return ec->client_data[i].value; + } } return -1; } - diff --git a/virtual.h b/virtual.h index 910b4b3c94..5dc313b9ac 100644 --- a/virtual.h +++ b/virtual.h @@ -1,50 +1,59 @@ -#define INSN_OUT(c, i) \ -if ((((char*)c->p->cur_ip) + sizeof(virtual_insn)) >= (char*)c->p->code_limit) {\ - extend_dill_stream(c);\ -}\ -*(virtual_insn*)c->p->cur_ip = i;\ -if (c->dill_debug) {\ -printf("%p -- ", c->p->cur_ip);\ -virtual_print_insn(c, NULL, c->p->cur_ip);\ -printf("\n");}\ -c->p->cur_ip = ((char*)c->p->cur_ip)+ sizeof(virtual_insn) +#define INSN_OUT(c, i) \ + if ((((char*)c->p->cur_ip) + sizeof(virtual_insn)) >= \ + (char*)c->p->code_limit) { \ + extend_dill_stream(c); \ + } \ + *(virtual_insn*)c->p->cur_ip = i; \ + if (c->dill_debug) { \ + printf("%p -- ", c->p->cur_ip); \ + virtual_print_insn(c, NULL, c->p->cur_ip); \ + printf("\n"); \ + } \ + c->p->cur_ip = ((char*)c->p->cur_ip) + sizeof(virtual_insn) typedef struct bitv { short len; char vec[2]; -} *bit_vec; +} * bit_vec; typedef struct basic_block { - int start; - int end; + ssize_t start; + ssize_t end; int label; int end_branch_label; int fall_through; int pred_count; - int *pred_list; + int* pred_list; int succ_count; - int *succ_list; + int* succ_list; bit_vec regs_used; bit_vec regs_defined; bit_vec live_at_end; - short *reg_assigns; + short* reg_assigns; int visited; int is_loop_start; int is_loop_end; -} *basic_block; - +} * basic_block; + typedef struct mach_info { arg_info_list arg_info; int bbcount; basic_block bblist; int prefix_code_start; -} *virtual_mach_info; +} * virtual_mach_info; -extern int dill_type_of(dill_stream c, int vreg); +extern int +dill_type_of(dill_stream c, size_t vreg); +extern void +virtual_proc_start(dill_stream c, + char* subr_name, + int arg_count, + arg_info_list args, + dill_reg* arglist); +extern void +virtual_end(dill_stream c); extern void -virtual_proc_start(dill_stream c, char *subr_name, int arg_count, - arg_info_list args, dill_reg *arglist); -extern void virtual_end(dill_stream c); -extern void virtual_package_end(dill_stream c); -extern int virtual_print_insn(dill_stream c, void *info_ptr, void *i); +virtual_package_end(dill_stream c); +extern int +virtual_print_insn(dill_stream c, void* info_ptr, void* i); diff --git a/virtual.ops b/virtual.ops index bdac2355f3..35e03b44cd 100644 --- a/virtual.ops +++ b/virtual.ops @@ -164,14 +164,22 @@ sub arith_insn { sub arith2_insn { local ($ops, $type_list, $subr) = @_; + %src1_cast = ('u', '(unsigned int)'); foreach(split(' ', $ops)) { $op = $_; $c_op = $c_operations{$op}; foreach(split(' ', $type_list)) { + if (($c_op eq '-') and ($_ eq "u")) { + $actual_op = '(unsigned) - (int)'; + } elsif (($c_op eq '-') and ($_ eq "ul")) { + $actual_op = '(uintptr_t) - (intptr_t)'; + } else { + $actual_op = $c_op; + } $jmp_a2_assigns = $jmp_a2_assigns . "\t ${mach}_jump_table->jmp_a2[dill_jmp_${op}${_}] = $subr;\n"; $jmp_a2_assigns = $jmp_a2_assigns . "\t ${mach}_jump_table->a2_data[dill_jmp_${op}${_}].data1 = dill_jmp_${op}${_};\n"; $jmp_a2_assigns = $jmp_a2_assigns . "\t ${mach}_jump_table->a2_data[dill_jmp_${op}${_}].data2 = 0;\n"; - $vm_a2_code .= "\t case dill_jmp_${op}${_}: dest->u.${_}.${_} = $c_op $src_cast{$_} src->u.${_}.${_}; break;\n"; + $vm_a2_code .= "\t case dill_jmp_${op}${_}: dest->u.${_}.${_} = $actual_op $src_cast{$_} src->u.${_}.${_}; break;\n"; } } } @@ -179,6 +187,7 @@ sub arith2_insn { sub arithi_insn { local ($ops, $type_list, $subr, $code1, $code2) = @_; %src1_cast = ('p', '(char*)'); + %src2_cast = ('i', '(int)', 'u', '(unsigned int)'); foreach(split(' ', $ops)) { $op = $_; $c_op = $c_operations{$op}; @@ -209,6 +218,7 @@ sub branch_insn { sub branchi_insn { local($ops, $types, $subr) = @_; + %src1_cast = ('u', '(unsigned int)', 'ul', '(uintptr_t)', 'p', '(IMM_TYPE)'); foreach (split(' ', $ops)) { $op = $_; $c_op = $c_operations{$op}; @@ -236,7 +246,7 @@ sub compare_insn { sub convert { local($from_types, $to_types) = @_; - %src_cast = ('pul', '(IMM_TYPE)', 'ulp', '(void*)'); + %src_cast = ('pul', '(IMM_TYPE)', 'ulp', '(void*)', 'c', '(char)', 's', '(short)', 'uc', '(unsigned char)', 'us', '(unsigned short)', 'i', '(int)', 'u', '(unsigned int)', 'l', '(intptr_t)', 'ul', '(uintptr_t)', 'f', '(float)', 'd', '(double)'); %convert_right = ('c', 'src->u.c.c', 's', '((short)(0xffff & src->u.s.s))', 'i', '((int)(0xffffffff & src->u.i.i))', 'uc', '((unsigned char)(0xff & src->u.uc.uc))', 'us', '((unsigned short)(0xffff & src->u.us.us))', 'u', '((unsigned int)(0xffffffff & src->u.u.u))', 'l', 'src->u.l.l', 'ul', '(UIMM_TYPE)src->u.ul.ul', 'd', 'src->u.d.d', 'f', 'src->u.f.f', 'p', 'src->u.l.l'); foreach (split(' ', $from_types)) { $from = $_; @@ -246,7 +256,7 @@ sub convert { } $dest_fld = ${_}; if ($_ eq "p") {$dest_fld = "ul";} - $vm_cvt_code .= "\tcase CONV(DILL_" . &upperc(${from}) . ", DILL_" . &upperc($_) . "): dest->u.${dest_fld}.${dest_fld} = $convert_right{$from}; break;\n"; + $vm_cvt_code .= "\tcase CONV(DILL_" . &upperc(${from}) . ", DILL_" . &upperc($_) . "): dest->u.${dest_fld}.${dest_fld} = $src_cast{$_} $convert_right{$from}; break;\n"; } } } @@ -278,36 +288,19 @@ print COUT< #include #include #include -#ifdef HAVE_MALLOC_H -#include -#endif #include +#ifdef _MSC_VER +#include +typedef SSIZE_T ssize_t; #else -#ifdef LINUX_KERNEL_MODULE -#ifndef __KERNEL__ -#define __KERNEL__ -#endif -#endif -#include -#include -#include -#include "kdill.h" -#include "library.h" - -#define printf printk -#define fprintf(file, args...) printk (args) -#define malloc (void *)DAllocMM -#define realloc(a,b) (void *)DReallocMM((addrs_t)a, b) -#define free(a) DFreeMM((addrs_t) a) -#define qsort _quicksort +#include #endif +#include "dill_internal.h" +#include "virtual.h" static void dill_varith3(dill_stream s, int op3, int op, int dest, int src1, int src2) diff --git a/vm.c b/vm.c index a16bf4e543..c3764e7790 100644 --- a/vm.c +++ b/vm.c @@ -1,28 +1,34 @@ #include "config.h" #include "dill.h" -#include "dill_internal.h" -#include "virtual.h" #undef NDEBUG -#include "assert.h" -#include #include +#include +#include "assert.h" #ifdef HAVE_MALLOC_H #include #endif -#include -#include #include +#include +#include +#ifdef _MSC_VER +#include +typedef SSIZE_T ssize_t; +#else +#include +#endif -#define PREG(ec, reg) ((reg < 100) ? &ec->p[reg] : &ec->r[reg-100]) - +#define PREG(ec, reg) ((reg < 100) ? &ec->p[reg] : &ec->r[reg - 100]) +#include "dill_internal.h" +#include "virtual.h" #include "vm_include.c" #ifdef BUILD_EMULATOR #include -static void run_emulation(dill_exec_ctx ec); +static void +run_emulation(dill_exec_ctx ec); -static -void emu_func(ffi_cif *cif, void*vret, void* args[], void *client_data) +static void +emu_func(ffi_cif* cif, void* vret, void* args[], void* client_data) { int i; dill_stream c = client_data; @@ -30,96 +36,94 @@ void emu_func(ffi_cif *cif, void*vret, void* args[], void *client_data) dill_exec_ctx ec; if ((param_count >= 1) && (c->p->c_param_args[0].type == DILL_EC)) { - ec = *(dill_exec_ctx*)args[0]; + ec = *(dill_exec_ctx*)args[0]; } else { - /* create an execution context to use */ - ec = dill_get_exec_context(c); - } + /* create an execution context to use */ + ec = dill_get_exec_context(c); + } if (!ec->p) { - ec->p = malloc(param_count * sizeof(struct reg_type)); + ec->p = malloc(param_count * sizeof(struct reg_type)); } - for (i= 0; i < param_count; i++) { - switch (c->p->c_param_args[i].type) { - case DILL_C: - ec->p[i].u.c.c = *((char **)args)[i]; - break; - case DILL_UC: - ec->p[i].u.uc.uc = *((unsigned char **)args)[i]; - break; - case DILL_S: - ec->p[i].u.s.s = *((short **)args)[i]; - break; - case DILL_US: - ec->p[i].u.us.us = *((unsigned short **)args)[i]; - break; - case DILL_I: - ec->p[i].u.i.i = *((int **)args)[i]; - break; - case DILL_U: - ec->p[i].u.u.u = *((unsigned int **)args)[i]; - break; - case DILL_L: - ec->p[i].u.l.l = *((long **)args)[i]; - break; - case DILL_UL: - ec->p[i].u.ul.ul = *((unsigned long **)args)[i]; - break; - case DILL_F: - ec->p[i].u.f.f = *((float **)args)[i]; - break; - case DILL_D: - ec->p[i].u.d.d = *((double **)args)[i]; - break; - case DILL_P: - case DILL_EC: - ec->p[i].u.p.p = *((void ***)args)[i]; - break; - } + for (i = 0; i < param_count; i++) { + switch (c->p->c_param_args[i].type) { + case DILL_C: + ec->p[i].u.c.c = *((char**)args)[i]; + break; + case DILL_UC: + ec->p[i].u.uc.uc = *((unsigned char**)args)[i]; + break; + case DILL_S: + ec->p[i].u.s.s = *((short**)args)[i]; + break; + case DILL_US: + ec->p[i].u.us.us = *((unsigned short**)args)[i]; + break; + case DILL_I: + ec->p[i].u.i.i = *((int**)args)[i]; + break; + case DILL_U: + ec->p[i].u.u.u = *((unsigned int**)args)[i]; + break; + case DILL_L: + ec->p[i].u.l.l = *((long**)args)[i]; + break; + case DILL_UL: + ec->p[i].u.ul.ul = *((unsigned long**)args)[i]; + break; + case DILL_F: + ec->p[i].u.f.f = *((float**)args)[i]; + break; + case DILL_D: + ec->p[i].u.d.d = *((double**)args)[i]; + break; + case DILL_P: + case DILL_EC: + ec->p[i].u.p.p = *((void***)args)[i]; + break; + } } /* execute the function */ run_emulation(ec); /* do return */ - switch(c->p->ret_type) { + switch (c->p->ret_type) { case DILL_C: - *((long *)vret) = (PREG(ec, ec->ret_reg)->u.c.c); - break; + *((long*)vret) = (PREG(ec, ec->ret_reg)->u.c.c); + break; case DILL_UC: - *((ffi_arg *)vret) = (PREG(ec, ec->ret_reg)->u.uc.uc); - break; + *((ffi_arg*)vret) = (PREG(ec, ec->ret_reg)->u.uc.uc); + break; case DILL_S: - *((ffi_sarg *)vret) = (PREG(ec, ec->ret_reg)->u.s.s); - break; + *((ffi_sarg*)vret) = (PREG(ec, ec->ret_reg)->u.s.s); + break; case DILL_US: - *((ffi_arg *)vret) = (PREG(ec, ec->ret_reg)->u.us.us); - break; + *((ffi_arg*)vret) = (PREG(ec, ec->ret_reg)->u.us.us); + break; case DILL_I: - *((ffi_sarg *)vret) = (PREG(ec, ec->ret_reg)->u.i.i); - break; + *((ffi_sarg*)vret) = (PREG(ec, ec->ret_reg)->u.i.i); + break; case DILL_U: - *((ffi_arg *)vret) = (PREG(ec, ec->ret_reg)->u.u.u); - break; + *((ffi_arg*)vret) = (PREG(ec, ec->ret_reg)->u.u.u); + break; case DILL_L: - *((ffi_sarg *)vret) = (PREG(ec, ec->ret_reg)->u.l.l); - break; + *((ffi_sarg*)vret) = (PREG(ec, ec->ret_reg)->u.l.l); + break; case DILL_UL: - *((ffi_arg *)vret) = (PREG(ec, ec->ret_reg)->u.ul.ul); - break; + *((ffi_arg*)vret) = (PREG(ec, ec->ret_reg)->u.ul.ul); + break; case DILL_F: - *((float *)vret) = (PREG(ec, ec->ret_reg)->u.f.f); - break; + *((float*)vret) = (PREG(ec, ec->ret_reg)->u.f.f); + break; case DILL_D: - *((double *)vret) = (PREG(ec, ec->ret_reg)->u.d.d); - break; + *((double*)vret) = (PREG(ec, ec->ret_reg)->u.d.d); + break; case DILL_P: - *((void**)vret) = (PREG(ec, ec->ret_reg)->u.p.p); - break; + *((void**)vret) = (PREG(ec, ec->ret_reg)->u.p.p); + break; } } -extern void * -emulate_clone_code(c, new_base, available_size) -dill_stream c; -void *new_base; +extern void* emulate_clone_code(c, new_base, available_size) dill_stream c; +void* new_base; int available_size; { return c->p->fp; @@ -128,20 +132,23 @@ int available_size; void free_emulator_handler_bits(dill_exec_handle handle) { - if (handle->emu_args) free(handle->emu_args); - if (handle->cifp) free(handle->cifp); - if (handle->closure) ffi_closure_free(handle->closure); + if (handle->emu_args) + free(handle->emu_args); + if (handle->cifp) + free(handle->cifp); + if (handle->closure) + ffi_closure_free(handle->closure); } void setup_VM_proc(dill_stream c) { - ffi_cif *cifp = malloc(sizeof(ffi_cif)); - ffi_type **args = NULL; - ffi_closure *closure; - void *func; - ffi_type *ret_type; - void *ret_addr = NULL; + ffi_cif* cifp = malloc(sizeof(ffi_cif)); + ffi_type** args = NULL; + ffi_closure* closure; + void* func; + ffi_type* ret_type; + void* ret_addr = NULL; int i; c->p->fp = NULL; @@ -151,92 +158,90 @@ setup_VM_proc(dill_stream c) switch (c->p->ret_type) { case DILL_C: - ret_type = &ffi_type_sint8; - break; + ret_type = &ffi_type_sint8; + break; case DILL_UC: - ret_type = &ffi_type_uint8; - break; + ret_type = &ffi_type_uint8; + break; case DILL_S: - ret_type = &ffi_type_sint16; - break; + ret_type = &ffi_type_sint16; + break; case DILL_US: - ret_type = &ffi_type_uint16; - break; + ret_type = &ffi_type_uint16; + break; case DILL_I: - ret_type = &ffi_type_sint32; - break; + ret_type = &ffi_type_sint32; + break; case DILL_U: - ret_type = &ffi_type_uint32; - break; + ret_type = &ffi_type_uint32; + break; case DILL_L: - ret_type = &ffi_type_sint64; - break; + ret_type = &ffi_type_sint64; + break; case DILL_UL: - ret_type = &ffi_type_uint64; - break; + ret_type = &ffi_type_uint64; + break; case DILL_P: - ret_type = &ffi_type_pointer; - break; + ret_type = &ffi_type_pointer; + break; case DILL_F: - ret_type = &ffi_type_float; - break; + ret_type = &ffi_type_float; + break; case DILL_D: - ret_type = &ffi_type_double; - break; + ret_type = &ffi_type_double; + break; case DILL_V: - ret_type = &ffi_type_void; - break; + ret_type = &ffi_type_void; + break; } args = malloc(c->p->c_param_count * sizeof(args[0])); - for (i=0; i < c->p->c_param_count; i++) { - switch(c->p->c_param_args[i].type) { - case DILL_C: - args[i] = &ffi_type_sint8; - break; - case DILL_UC: - args[i] = &ffi_type_uint8; - break; - case DILL_S: - args[i] = &ffi_type_sint16; - break; - case DILL_US: - args[i] = &ffi_type_uint16; - break; - case DILL_I: - args[i] = &ffi_type_sint32; - break; - case DILL_U: - args[i] = &ffi_type_uint32; - break; - case DILL_L: - args[i] = &ffi_type_sint64; - break; - case DILL_UL: - args[i] = &ffi_type_uint64; - break; - case DILL_EC: - case DILL_P: - args[i] = &ffi_type_pointer; - break; - case DILL_F: - args[i] = &ffi_type_float; - break; - case DILL_D: - args[i] = &ffi_type_double; - break; - case DILL_V: - args[i] = &ffi_type_void; - } + for (i = 0; i < c->p->c_param_count; i++) { + switch (c->p->c_param_args[i].type) { + case DILL_C: + args[i] = &ffi_type_sint8; + break; + case DILL_UC: + args[i] = &ffi_type_uint8; + break; + case DILL_S: + args[i] = &ffi_type_sint16; + break; + case DILL_US: + args[i] = &ffi_type_uint16; + break; + case DILL_I: + args[i] = &ffi_type_sint32; + break; + case DILL_U: + args[i] = &ffi_type_uint32; + break; + case DILL_L: + args[i] = &ffi_type_sint64; + break; + case DILL_UL: + args[i] = &ffi_type_uint64; + break; + case DILL_EC: + case DILL_P: + args[i] = &ffi_type_pointer; + break; + case DILL_F: + args[i] = &ffi_type_float; + break; + case DILL_D: + args[i] = &ffi_type_double; + break; + case DILL_V: + args[i] = &ffi_type_void; + } } - if (ffi_prep_cif(cifp, FFI_DEFAULT_ABI, c->p->c_param_count, - ret_type, args) != FFI_OK) { - return; + if (ffi_prep_cif(cifp, FFI_DEFAULT_ABI, c->p->c_param_count, ret_type, + args) != FFI_OK) { + return; } - if (ffi_prep_closure_loc(closure, cifp, emu_func, - c, func) != FFI_OK) { - - return; + if (ffi_prep_closure_loc(closure, cifp, emu_func, c, func) != FFI_OK) { + return; } c->p->fp = func; c->p->emu_args = args; @@ -244,373 +249,373 @@ setup_VM_proc(dill_stream c) c->p->closure = closure; } -static void run_emulation(dill_exec_ctx ec) +static void +run_emulation(dill_exec_ctx ec) { dill_stream c = ec->dc; - void *insns = c->p->code_base; - virtual_insn *ip = &((virtual_insn *)insns)[0]; + void* insns = c->p->code_base; + virtual_insn* ip = &((virtual_insn*)insns)[0]; virtual_mach_info vmi = (virtual_mach_info)c->p->mach_info; if (vmi->prefix_code_start != -1) { - ip = (virtual_insn*)((char*)insns + (vmi->prefix_code_start * sizeof(virtual_insn))); + ip = (virtual_insn*)((char*)insns + + (vmi->prefix_code_start * sizeof(virtual_insn))); } int varidiac_call = 0; while (1) { - struct reg_type *pused[3]; - struct reg_type *pdest; - int loc; - int insn_code; - insn_code = ip->insn_code; - loc = ((char*)ip - (char*)insns); - if (c->dill_debug) { - printf(" v loc(%d) ", loc); - virtual_print_insn(c, NULL, ip); - printf("\n"); - } - switch(ip->class_code) { - case iclass_arith3: { - /* arith 3 operand integer insns */ - int r0 = ip->opnds.a3.src1; - int r1 = ip->opnds.a3.src2; - int d = ip->opnds.a3.dest; - pused[0] = PREG(ec, r0); - pused[1] = PREG(ec, r1); - pdest = PREG(ec, d); - emulate_arith3(insn_code, pdest, pused[0], pused[1]); - break; - } - case iclass_arith2: { - /* arith 2 operand integer insns */ - int r0 = ip->opnds.a2.src; - int d = ip->opnds.a2.dest; - pused[0] = PREG(ec, r0); - pdest = PREG(ec, d); - emulate_arith2(insn_code, pdest, pused[0]); - break; - } - case iclass_arith3i:{ - /* arith 3 immediate operand integer insns */ - int r0 = ip->opnds.a3i.src; - int d = ip->opnds.a3i.dest; - pused[0] = PREG(ec, r0); - pdest = PREG(ec, d); - emulate_arith3i(insn_code, pdest, pused[0], ip->opnds.a3i.u.imm); - break; - } - case iclass_ret: - ec->ret_reg = ip->opnds.a1.src; - return; - break; - case iclass_convert: { - int r0 = ip->opnds.a2.src; - int d = ip->opnds.a2.dest; - pused[0] = PREG(ec, r0); - pdest = PREG(ec, d); - emulate_convert(ip->insn_code & 0xff, pdest, pused[0]); - break; - } - case iclass_loadstore: { - /* load store immediate operand integer insns */ - pdest = PREG(ec, ip->opnds.a3.dest); - pused[0] = PREG(ec, ip->opnds.a3.src1); - pused[1] = PREG(ec, ip->opnds.a3.src2); - if ((ip->insn_code >> 4) == 0) { - emulate_loadi(ip->insn_code & 0xf, - pdest, pused[0], - pused[1]->u.l.l); - } else { - /* a store, dest is the source of the store */ - emulate_storei(ip->insn_code & 0xf, - pdest, pused[0], - pused[1]->u.l.l); - } - break; - } - case iclass_lea: { - int offset = ip->opnds.a3i.u.imm; - pused[0] = PREG(ec, ip->opnds.a3i.src); - pdest = PREG(ec, ip->opnds.a3i.dest); - pdest->u.p.p = ((char*)pused[0]->u.p.p) + offset; - break; - } - case iclass_loadstorei: - /* load store immediate operand integer insns */ - pdest = PREG(ec, ip->opnds.a3i.dest); - pused[0] = PREG(ec, ip->opnds.a3i.src); - if ((ip->insn_code >> 4) == 0) { - emulate_loadi(ip->insn_code & 0xf, - pdest, pused[0], - ip->opnds.a3i.u.imm); - } else { - /* a store, dest is the source of the store */ - emulate_storei(ip->insn_code & 0xf, - pdest, pused[0], - ip->opnds.a3i.u.imm); - } - break; - case iclass_set: { - pdest = PREG(ec, ip->opnds.a3i.dest); - pdest->u.l.l = ip->opnds.a3i.u.imm; - break; - } - case iclass_setf: { - pdest = PREG(ec, ip->opnds.sf.dest); - if ((ip->insn_code & 0xf) == DILL_F) { - pdest->u.f.f = (float) ip->opnds.sf.imm; - } else { - pdest->u.d.d = ip->opnds.sf.imm; - } - break; - } - case iclass_mov: { - pdest = PREG(ec, ip->opnds.a2.dest); - pused[0] = PREG(ec, ip->opnds.a2.src); + struct reg_type* pused[3]; + struct reg_type* pdest; + int loc; + int insn_code; + insn_code = ip->insn_code; + loc = ((char*)ip - (char*)insns); + if (c->dill_debug) { + printf(" v loc(%d) ", loc); + virtual_print_insn(c, NULL, ip); + printf("\n"); + } + switch (ip->class_code) { + case iclass_arith3: { + /* arith 3 operand integer insns */ + int r0 = ip->opnds.a3.src1; + int r1 = ip->opnds.a3.src2; + int d = ip->opnds.a3.dest; + pused[0] = PREG(ec, r0); + pused[1] = PREG(ec, r1); + pdest = PREG(ec, d); + emulate_arith3(insn_code, pdest, pused[0], pused[1]); + break; + } + case iclass_arith2: { + /* arith 2 operand integer insns */ + int r0 = ip->opnds.a2.src; + int d = ip->opnds.a2.dest; + pused[0] = PREG(ec, r0); + pdest = PREG(ec, d); + emulate_arith2(insn_code, pdest, pused[0]); + break; + } + case iclass_arith3i: { + /* arith 3 immediate operand integer insns */ + int r0 = ip->opnds.a3i.src; + int d = ip->opnds.a3i.dest; + pused[0] = PREG(ec, r0); + pdest = PREG(ec, d); + emulate_arith3i(insn_code, pdest, pused[0], ip->opnds.a3i.u.imm); + break; + } + case iclass_ret: + ec->ret_reg = ip->opnds.a1.src; + return; + break; + case iclass_convert: { + int r0 = ip->opnds.a2.src; + int d = ip->opnds.a2.dest; + pused[0] = PREG(ec, r0); + pdest = PREG(ec, d); + emulate_convert(ip->insn_code & 0xff, pdest, pused[0]); + break; + } + case iclass_loadstore: { + /* load store immediate operand integer insns */ + pdest = PREG(ec, ip->opnds.a3.dest); + pused[0] = PREG(ec, ip->opnds.a3.src1); + pused[1] = PREG(ec, ip->opnds.a3.src2); + if ((ip->insn_code >> 4) == 0) { + emulate_loadi(ip->insn_code & 0xf, pdest, pused[0], + pused[1]->u.l.l); + } else { + /* a store, dest is the source of the store */ + emulate_storei(ip->insn_code & 0xf, pdest, pused[0], + pused[1]->u.l.l); + } + break; + } + case iclass_lea: { + int offset = ip->opnds.a3i.u.imm; + pused[0] = PREG(ec, ip->opnds.a3i.src); + pdest = PREG(ec, ip->opnds.a3i.dest); + pdest->u.p.p = ((char*)pused[0]->u.p.p) + offset; + break; + } + case iclass_loadstorei: + /* load store immediate operand integer insns */ + pdest = PREG(ec, ip->opnds.a3i.dest); + pused[0] = PREG(ec, ip->opnds.a3i.src); + if ((ip->insn_code >> 4) == 0) { + emulate_loadi(ip->insn_code & 0xf, pdest, pused[0], + ip->opnds.a3i.u.imm); + } else { + /* a store, dest is the source of the store */ + emulate_storei(ip->insn_code & 0xf, pdest, pused[0], + ip->opnds.a3i.u.imm); + } + break; + case iclass_set: { + pdest = PREG(ec, ip->opnds.a3i.dest); + pdest->u.l.l = ip->opnds.a3i.u.imm; + break; + } + case iclass_setf: { + pdest = PREG(ec, ip->opnds.sf.dest); + if ((ip->insn_code & 0xf) == DILL_F) { + pdest->u.f.f = (float)ip->opnds.sf.imm; + } else { + pdest->u.d.d = ip->opnds.sf.imm; + } + break; + } + case iclass_mov: { + pdest = PREG(ec, ip->opnds.a2.dest); + pused[0] = PREG(ec, ip->opnds.a2.src); - pdest->u = pused[0]->u; - break; - } - case iclass_reti: - /* return immediate integer insns */ - /* arbitrarily destroy reg 100 and return it */ - ec->ret_reg = 100; -// switch(ip->insn_code & 0xf) { - PREG(ec, ec->ret_reg)->u.l.l = ip->opnds.a3i.u.imm; - return; - case iclass_branch: - { - /* branch */ - int br_op = ip->insn_code; - int r0 = ip->opnds.br.src1; - int r1 = ip->opnds.br.src2; - pused[0] = PREG(ec, r0); - pused[1] = PREG(ec, r1); - if (emulate_branch(br_op, pused[0], pused[1])) { - ip = (void*)(((char *)(&((virtual_insn *)insns)[-1])) + c->p->branch_table.label_locs[ip->opnds.br.label]); - } - } - break; - case iclass_branchi: - { - /* branch immediate */ - int br_op = ip->insn_code; - int r0 = ip->opnds.bri.src; - pused[0] = PREG(ec, r0); - if (emulate_branchi(br_op, pused[0], ip->opnds.bri.imm_l)) { - ip = (void*)(((char *)(&((virtual_insn *)insns)[-1])) + c->p->branch_table.label_locs[ip->opnds.bri.label]); - } - } - break; - case iclass_jump_to_label: - ip = (void*)(((char *)(&((virtual_insn *)insns)[-1])) + c->p->branch_table.label_locs[ip->opnds.br.label]); - break; - break; - case iclass_jump_to_reg: - printf("Unimpl13\n"); - /* dill_jp(c, pused[0]);*/ - break; - case iclass_jump_to_imm: - printf("Unimpl14\n"); - dill_jpi(c, ip->opnds.bri.imm_a); - break; - case iclass_special: - printf("Unimpl15\n"); - dill_special(c, ip->opnds.spec.type, ip->opnds.spec.param); - break; - case iclass_call: - { - int i; - int ret_reg = ip->opnds.bri.src; - int reg = ip->insn_code & 0x10; - int typ = ip->insn_code & 0xf; - ffi_type **args = malloc(sizeof(args[0])*ec->out_param_count); - void **values = malloc(sizeof(values[0])*ec->out_param_count); - void *func; - ffi_type *ret_type; - void *ret_addr = NULL; - ffi_cif cif; - int ret; - pused[0] = PREG(ec, ret_reg); - if (reg != 0) { - func = PREG(ec, (long)ip->opnds.bri.imm_l)->u.p.p; - } else { - func = (void*)ip->opnds.bri.imm_a; - } - switch(typ) { - case DILL_C: - ret_type = &ffi_type_sint8; - ret_addr = &pused[0]->u.l.l; - break; - case DILL_UC: - ret_type = &ffi_type_uint8; - ret_addr = &pused[0]->u.ul.ul; - break; - case DILL_S: - ret_type = &ffi_type_sint16; - ret_addr = &pused[0]->u.l.l; - break; - case DILL_US: - ret_type = &ffi_type_uint16; - ret_addr = &pused[0]->u.ul.ul; - break; - case DILL_I: - ret_type = &ffi_type_sint32; - ret_addr = &pused[0]->u.l.l; - break; - case DILL_U: - ret_type = &ffi_type_uint32; - ret_addr = &pused[0]->u.ul.ul; - break; - case DILL_L: - ret_type = &ffi_type_sint64; - ret_addr = &pused[0]->u.l.l; - break; - case DILL_UL: - ret_type = &ffi_type_uint64; - ret_addr = &pused[0]->u.ul.ul; - break; - case DILL_P: - ret_type = &ffi_type_pointer; - ret_addr = &pused[0]->u.p.p; - break; - case DILL_F: - ret_type = &ffi_type_float; - ret_addr = &pused[0]->u.f.f; - break; - case DILL_D: - ret_type = &ffi_type_double; - ret_addr = &pused[0]->u.d.d; - break; - case DILL_V: - ret_type = &ffi_type_void; - ret_addr = NULL; - break; - } - for (i=0; i < ec->out_param_count; i++) { - switch(ec->out_params[i].typ) { - case DILL_C: - args[i] = &ffi_type_sint8; - values[i] = &ec->out_params[i].val.u.c.c; - break; - case DILL_UC: - args[i] = &ffi_type_uint8; - values[i] = &ec->out_params[i].val.u.uc.uc; - break; - case DILL_S: - args[i] = &ffi_type_sint16; - values[i] = &ec->out_params[i].val.u.s.s; - break; - case DILL_US: - args[i] = &ffi_type_uint16; - values[i] = &ec->out_params[i].val.u.us.us; - break; - case DILL_I: - args[i] = &ffi_type_sint32; - values[i] = &ec->out_params[i].val.u.i.i; - break; - case DILL_U: - args[i] = &ffi_type_uint32; - values[i] = &ec->out_params[i].val.u.u.u; - break; - case DILL_L: - args[i] = &ffi_type_sint64; - values[i] = &ec->out_params[i].val.u.l.l; - break; - case DILL_UL: - args[i] = &ffi_type_uint64; - values[i] = &ec->out_params[i].val.u.ul.ul; - break; - case DILL_P: - args[i] = &ffi_type_pointer; - values[i] = &ec->out_params[i].val.u.p.p; - break; - case DILL_F: - args[i] = &ffi_type_float; - values[i] = &ec->out_params[i].val.u.f.f; - break; - case DILL_D: - args[i] = &ffi_type_double; - values[i] = &ec->out_params[i].val.u.d.d; - break; - case DILL_V: - break; - } - } - if (varidiac_call <= -2) { - ret = ffi_prep_cif_var(&cif, FFI_DEFAULT_ABI, - -(varidiac_call +2), - ec->out_param_count, - ret_type, args); - } else { - ret = ffi_prep_cif(&cif, FFI_DEFAULT_ABI, ec->out_param_count, - ret_type, args); - } - if (ret == FFI_OK) { - ffi_call(&cif, func, ret_addr, values); - } - } - break; + pdest->u = pused[0]->u; + break; + } + case iclass_reti: + /* return immediate integer insns */ + /* arbitrarily destroy reg 100 and return it */ + ec->ret_reg = 100; + // switch(ip->insn_code & 0xf) { + PREG(ec, ec->ret_reg)->u.l.l = ip->opnds.a3i.u.imm; + return; + case iclass_branch: { + /* branch */ + int br_op = ip->insn_code; + int r0 = ip->opnds.br.src1; + int r1 = ip->opnds.br.src2; + pused[0] = PREG(ec, r0); + pused[1] = PREG(ec, r1); + if (emulate_branch(br_op, pused[0], pused[1])) { + ip = (void*)(((char*)(&((virtual_insn*)insns)[-1])) + + c->p->branch_table.label_locs[ip->opnds.br.label]); + } + } break; + case iclass_branchi: { + /* branch immediate */ + int br_op = ip->insn_code; + int r0 = ip->opnds.bri.src; + pused[0] = PREG(ec, r0); + if (emulate_branchi(br_op, pused[0], ip->opnds.bri.imm_l)) { + ip = + (void*)(((char*)(&((virtual_insn*)insns)[-1])) + + c->p->branch_table.label_locs[ip->opnds.bri.label]); + } + } break; + case iclass_jump_to_label: + ip = (void*)(((char*)(&((virtual_insn*)insns)[-1])) + + c->p->branch_table.label_locs[ip->opnds.br.label]); + break; + break; + case iclass_jump_to_reg: + printf("Unimpl13\n"); + /* dill_jp(c, pused[0]);*/ + break; + case iclass_jump_to_imm: + printf("Unimpl14\n"); + dill_jpi(c, ip->opnds.bri.imm_a); + break; + case iclass_special: + printf("Unimpl15\n"); + dill_special(c, ip->opnds.spec.type, ip->opnds.spec.param); + break; + case iclass_call: { + int i; + int ret_reg = ip->opnds.bri.src; + int reg = ip->insn_code & 0x10; + int typ = ip->insn_code & 0xf; + ffi_type** args = malloc(sizeof(args[0]) * ec->out_param_count); + void** values = malloc(sizeof(values[0]) * ec->out_param_count); + void* func; + ffi_type* ret_type; + void* ret_addr = NULL; + ffi_cif cif; + int ret; + pused[0] = PREG(ec, ret_reg); + if (reg != 0) { + func = PREG(ec, (long)ip->opnds.bri.imm_l)->u.p.p; + } else { + func = (void*)ip->opnds.bri.imm_a; + } + switch (typ) { + case DILL_C: + ret_type = &ffi_type_sint8; + ret_addr = &pused[0]->u.l.l; + break; + case DILL_UC: + ret_type = &ffi_type_uint8; + ret_addr = &pused[0]->u.ul.ul; + break; + case DILL_S: + ret_type = &ffi_type_sint16; + ret_addr = &pused[0]->u.l.l; + break; + case DILL_US: + ret_type = &ffi_type_uint16; + ret_addr = &pused[0]->u.ul.ul; + break; + case DILL_I: + ret_type = &ffi_type_sint32; + ret_addr = &pused[0]->u.l.l; + break; + case DILL_U: + ret_type = &ffi_type_uint32; + ret_addr = &pused[0]->u.ul.ul; + break; + case DILL_L: + ret_type = &ffi_type_sint64; + ret_addr = &pused[0]->u.l.l; + break; + case DILL_UL: + ret_type = &ffi_type_uint64; + ret_addr = &pused[0]->u.ul.ul; + break; + case DILL_P: + ret_type = &ffi_type_pointer; + ret_addr = &pused[0]->u.p.p; + break; + case DILL_F: + ret_type = &ffi_type_float; + ret_addr = &pused[0]->u.f.f; + break; + case DILL_D: + ret_type = &ffi_type_double; + ret_addr = &pused[0]->u.d.d; + break; + case DILL_V: + ret_type = &ffi_type_void; + ret_addr = NULL; + break; + } + for (i = 0; i < ec->out_param_count; i++) { + switch (ec->out_params[i].typ) { + case DILL_C: + args[i] = &ffi_type_sint8; + values[i] = &ec->out_params[i].val.u.c.c; + break; + case DILL_UC: + args[i] = &ffi_type_uint8; + values[i] = &ec->out_params[i].val.u.uc.uc; + break; + case DILL_S: + args[i] = &ffi_type_sint16; + values[i] = &ec->out_params[i].val.u.s.s; + break; + case DILL_US: + args[i] = &ffi_type_uint16; + values[i] = &ec->out_params[i].val.u.us.us; + break; + case DILL_I: + args[i] = &ffi_type_sint32; + values[i] = &ec->out_params[i].val.u.i.i; + break; + case DILL_U: + args[i] = &ffi_type_uint32; + values[i] = &ec->out_params[i].val.u.u.u; + break; + case DILL_L: + args[i] = &ffi_type_sint64; + values[i] = &ec->out_params[i].val.u.l.l; + break; + case DILL_UL: + args[i] = &ffi_type_uint64; + values[i] = &ec->out_params[i].val.u.ul.ul; + break; + case DILL_P: + args[i] = &ffi_type_pointer; + values[i] = &ec->out_params[i].val.u.p.p; + break; + case DILL_F: + args[i] = &ffi_type_float; + values[i] = &ec->out_params[i].val.u.f.f; + break; + case DILL_D: + args[i] = &ffi_type_double; + values[i] = &ec->out_params[i].val.u.d.d; + break; + case DILL_V: + break; + } + } + if (varidiac_call <= -2) { + ret = ffi_prep_cif_var(&cif, FFI_DEFAULT_ABI, + -(varidiac_call + 2), + ec->out_param_count, ret_type, args); + } else { + ret = ffi_prep_cif(&cif, FFI_DEFAULT_ABI, ec->out_param_count, + ret_type, args); + } + if (ret == FFI_OK) { + ffi_call(&cif, func, ret_addr, values); + } + } break; - case iclass_push: - { - int typ = ip->insn_code & 0xf; - int r0 = ip->opnds.a1.src; - if ((short)ip->opnds.a1.src < 0) { - /* this is really push init, with varidiac status in src */ - ec->out_param_count = 0; - ec->out_params = malloc(sizeof(ec->out_params[0])); - varidiac_call = 0; - if (((short)ip->opnds.a1.src) <= -2) { - varidiac_call = (short)ip->opnds.a1.src; - } - } else { - ec->out_params = realloc(ec->out_params, sizeof(ec->out_params[0]) * (ec->out_param_count + 1)); - ec->out_params[ec->out_param_count].typ = typ; - ec->out_params[ec->out_param_count].val = *PREG(ec, r0); - ec->out_param_count++; - } - } - break; - case iclass_pushi: { - int typ = ip->insn_code & 0xf; - ec->out_params = realloc(ec->out_params, sizeof(ec->out_params[0]) * (ec->out_param_count + 1)); - ec->out_params[ec->out_param_count].typ = typ; - if (typ == DILL_P) { - ec->out_params[ec->out_param_count].val.u.p.p = ip->opnds.a3i.u.imm_a; - } else { - ec->out_params[ec->out_param_count].val.u.l.l = ip->opnds.a3i.u.imm; - } - ec->out_param_count++; - break; - } - case iclass_pushf: - ec->out_params = realloc(ec->out_params, sizeof(ec->out_params[0]) * (ec->out_param_count + 1)); - ec->out_params[ec->out_param_count].typ = DILL_D; - ec->out_params[ec->out_param_count].val.u.l.l = ip->opnds.a3i.u.imm; - ec->out_param_count++; - break; - case iclass_nop: - break; - case iclass_compare: - { - /* arith 3 operand integer insns */ - int r0 = ip->opnds.a3.src1; - int r1 = ip->opnds.a3.src2; - int d = ip->opnds.a3.dest; - pused[0] = PREG(ec, r0); - pused[1] = PREG(ec, r1); - pdest = PREG(ec, d); - pdest->u.i.i = emulate_compare(insn_code, pused[0], pused[1]); - break; - } - case iclass_mark_label: - break; - default: - printf("Unhandled insn in emulator, %p - %d\n", ip, ip->class_code); - break; - } - ip++; - if (ip >= (virtual_insn *)c->p->virtual.cur_ip) { - ip = &((virtual_insn *)insns)[0]; - } + case iclass_push: { + int typ = ip->insn_code & 0xf; + int r0 = ip->opnds.a1.src; + if ((short)ip->opnds.a1.src < 0) { + /* this is really push init, with varidiac status in src */ + ec->out_param_count = 0; + ec->out_params = malloc(sizeof(ec->out_params[0])); + varidiac_call = 0; + if (((short)ip->opnds.a1.src) <= -2) { + varidiac_call = (short)ip->opnds.a1.src; + } + } else { + ec->out_params = + realloc(ec->out_params, sizeof(ec->out_params[0]) * + (ec->out_param_count + 1)); + ec->out_params[ec->out_param_count].typ = typ; + ec->out_params[ec->out_param_count].val = *PREG(ec, r0); + ec->out_param_count++; + } + } break; + case iclass_pushi: { + int typ = ip->insn_code & 0xf; + ec->out_params = + realloc(ec->out_params, + sizeof(ec->out_params[0]) * (ec->out_param_count + 1)); + ec->out_params[ec->out_param_count].typ = typ; + if (typ == DILL_P) { + ec->out_params[ec->out_param_count].val.u.p.p = + ip->opnds.a3i.u.imm_a; + } else { + ec->out_params[ec->out_param_count].val.u.l.l = + ip->opnds.a3i.u.imm; + } + ec->out_param_count++; + break; + } + case iclass_pushf: + ec->out_params = + realloc(ec->out_params, + sizeof(ec->out_params[0]) * (ec->out_param_count + 1)); + ec->out_params[ec->out_param_count].typ = DILL_D; + ec->out_params[ec->out_param_count].val.u.l.l = ip->opnds.a3i.u.imm; + ec->out_param_count++; + break; + case iclass_nop: + break; + case iclass_compare: { + /* arith 3 operand integer insns */ + int r0 = ip->opnds.a3.src1; + int r1 = ip->opnds.a3.src2; + int d = ip->opnds.a3.dest; + pused[0] = PREG(ec, r0); + pused[1] = PREG(ec, r1); + pdest = PREG(ec, d); + pdest->u.i.i = emulate_compare(insn_code, pused[0], pused[1]); + break; + } + case iclass_mark_label: + break; + default: + printf("Unhandled insn in emulator, %p - %d\n", ip, ip->class_code); + break; + } + ip++; + if (ip >= (virtual_insn*)c->p->virtual.cur_ip) { + ip = &((virtual_insn*)insns)[0]; + } } } #endif diff --git a/vtests/basic_call.c b/vtests/basic_call.c index 124b8d2198..2dd1a3a98e 100644 --- a/vtests/basic_call.c +++ b/vtests/basic_call.c @@ -254,7 +254,7 @@ void e () { dill_addii(s, l,k,3); dill_reti(s, l); handle = dill_finalize(s); - ip = (int(*)())dill_get_fp(handle); + ip = (int(*)(int (*)(int, int), int, int, int, int, int, int, int, int, int))dill_get_fp(handle); if (verbose) dill_dump(s); diff --git a/vtests/general.ops b/vtests/general.ops index e7e6713762..c30094cd63 100644 --- a/vtests/general.ops +++ b/vtests/general.ops @@ -102,7 +102,7 @@ sub arith_insn { if (defined($c_src1_values{$full_op})) { $vals = $c_src1_values{$full_op}; print COUT " for (i=0 ; i < sizeof($vals)/sizeof($vals\[0\]) ; i++) {\n"; - print COUT " $c_type source1_$_ = $vals\[i\];\n"; + print COUT " $c_type source1_$_ = ($c_type) $vals\[i\];\n"; } else { print COUT " {\n"; print COUT " $c_type source1_$_ = rand1_$_;\n"; @@ -110,7 +110,7 @@ sub arith_insn { if (defined($c_src2_values{$full_op})) { $vals = $c_src2_values{$full_op}; print COUT " for (j=0 ; j < sizeof($vals)/sizeof($vals\[0\]) ; j++) {\n"; - print COUT " $c_type source2_$_ = $vals\[j\];\n"; + print COUT " $c_type source2_$_ = ($c_type) $vals\[j\];\n"; } else { print COUT " {\n"; print COUT " $c_type source2_$_ = rand2_$_;\n"; @@ -243,6 +243,13 @@ sub arith2_insn { $c_pformat = $c_print_formats{${_}}; $arg_str = "$drisc_arg_formats{${_}}"; $full_op = "${dill_op}${_}"; + if (($c_op eq '-') and ($_ eq "u")) { + $actual_op = '(unsigned) - (int)'; + } elsif (($c_op eq '-') and ($_ eq "ul")) { + $actual_op = '(uintptr_t) - (intptr_t)'; + } else { + $actual_op = $c_op; + } print COUT "\n /* test for dill_$dill_op${_} */\n"; print COUT " if (verbose) printf(\"test for dill_$dill_op${_}\");\n"; if (defined($c_src1_values{$full_op})) { @@ -273,7 +280,7 @@ print COUT< #endif +#include #ifdef _MSC_VER #include @@ -1079,14 +1087,14 @@ main(int argc, char **argv) { dill_stream c = dill_create_stream(); int failed = 0, verbose = 0; - int i, j; + size_t i, j; EOF # print COUT "# line ". (__LINE__ + 2) . " \"general.ops\"\n"; foreach $dill_type (keys %c_types) { $c_type = $c_types{$dill_type}; $rand_type = $rand_types{$dill_type}; - print COUT " $c_type rand1_$dill_type = ${rand_type}rand48();\n"; - print COUT " $c_type rand2_$dill_type = ${rand_type}rand48();\n"; + print COUT " $c_type rand1_$dill_type = ($c_type)${rand_type}rand48();\n"; + print COUT " $c_type rand2_$dill_type = ($c_type)${rand_type}rand48();\n"; print COUT " $c_type src1${dill_type}_vals[2];\n"; print COUT " $c_type src2${dill_type}_vals[2];\n"; print COUT " $c_type br_src${dill_type}_vals[6];\n"; @@ -1110,21 +1118,23 @@ EOF print COUT " src2${dill_type}_vals[0] = rand2_$dill_type;\n"; print COUT " src2${dill_type}_vals[1] = -rand2_$dill_type;\n"; } + %u_casts = ('uc', '(char)', 'us', '(short)', 'u', '(int)', 'ul', '(intptr_t)'); foreach $dill_type (split(' ', "uc us u ul")) { $c_type = $c_types{$dill_type}; + print COUT " src1${dill_type}_vals[0] = ($c_type) rand1_$dill_type;\n"; - print COUT " src1${dill_type}_vals[1] = ($c_type) -rand1_$dill_type;\n"; + print COUT " src1${dill_type}_vals[1] = ($c_type) - $u_casts{$dill_type} rand1_$dill_type;\n"; print COUT " src2${dill_type}_vals[0] = ($c_type) rand2_$dill_type;\n"; - print COUT " src2${dill_type}_vals[1] = ($c_type) -rand2_$dill_type;\n"; + print COUT " src2${dill_type}_vals[1] = ($c_type) - $u_casts{$dill_type} rand2_$dill_type;\n"; } foreach $dill_type (split(' ', "uc c us s i u l ul d f")) { $c_type = $c_types{$dill_type}; print COUT " br_src${dill_type}_vals[0] = ($c_type) rand1_$dill_type;\n"; - print COUT " br_src${dill_type}_vals[1] = ($c_type) -rand1_$dill_type;\n"; + print COUT " br_src${dill_type}_vals[1] = ($c_type) - $u_casts{$dill_type} rand1_$dill_type;\n"; print COUT " br_src${dill_type}_vals[2] = ($c_type) rand1_$dill_type + 1;\n"; - print COUT " br_src${dill_type}_vals[3] = ($c_type) -rand1_$dill_type + 1;\n"; + print COUT " br_src${dill_type}_vals[3] = ($c_type) -($u_casts{$dill_type} rand1_$dill_type) + 1;\n"; print COUT " br_src${dill_type}_vals[4] = ($c_type) rand1_$dill_type - 1;\n"; - print COUT " br_src${dill_type}_vals[5] = ($c_type) -rand1_$dill_type - 1;\n"; + print COUT " br_src${dill_type}_vals[5] = ($c_type) -($u_casts{$dill_type} rand1_$dill_type) - 1;\n"; } $dill_type = 'p'; $c_type = $c_types{'p'}; diff --git a/vtests/opt.c b/vtests/opt.c index ea781dabba..984c378980 100644 --- a/vtests/opt.c +++ b/vtests/opt.c @@ -20,7 +20,7 @@ void a () { dill_reg a; dill_exec_ctx ec; dill_exec_handle handle; - int (*ip)(); + int (*ip)(dill_exec_ctx, int); int result; dill_start_proc(s, "a_gen", DILL_I, "%EC%i"); @@ -32,7 +32,7 @@ void a () { dill_addii(s, a, a, 20); dill_reti(s, a); handle = dill_finalize(s); - ip = (int(*)())dill_get_fp(handle); + ip = (int(*)(dill_exec_ctx, int))dill_get_fp(handle); if (verbose) dill_dump(s); @@ -51,7 +51,7 @@ void b () { dill_reg a; dill_exec_ctx ec; dill_exec_handle handle; - int (*ip)(); + int (*ip)(dill_exec_ctx, int); int result; dill_start_proc(s, "a_gen", DILL_I, "%EC%i"); @@ -63,7 +63,7 @@ void b () { dill_addii(s, a, a, 1); dill_reti(s, a); handle = dill_finalize(s); - ip = (int(*)())dill_get_fp(handle); + ip = (int(*)(dill_exec_ctx, int))dill_get_fp(handle); if (verbose) dill_dump(s); diff --git a/vtests/t1.c b/vtests/t1.c index fb329d0b3f..cb820a31e4 100644 --- a/vtests/t1.c +++ b/vtests/t1.c @@ -21,7 +21,7 @@ void a () { dill_reg a,b,p3,d,e,f; dill_exec_ctx ec; dill_exec_handle handle; - int (*ip)(); + int (*ip)(dill_exec_ctx, int , int ); dill_start_proc(s, "a_gen", DILL_I, "%EC%i%i"); @@ -47,7 +47,7 @@ void a () { dill_addi(s, f, f, e); dill_reti(s, f); handle = dill_finalize(s); - ip = (int(*)())dill_get_fp(handle); + ip = (int(*)(dill_exec_ctx, int, int))dill_get_fp(handle); #ifdef USE_MMAP_CODE_SEG #ifndef MAP_ANONYMOUS diff --git a/x86_64.c b/x86_64.c index 8b2959a1cc..068d403c14 100644 --- a/x86_64.c +++ b/x86_64.c @@ -1,502 +1,538 @@ #include "config.h" -#ifdef LINUX_KERNEL_MODULE -#ifndef MODULE -#define MODULE -#endif -#ifndef __KERNEL__ -#define __KERNEL__ -#endif -#include -#include -#endif - #undef NDEBUG #include "assert.h" -#ifndef LINUX_KERNEL_MODULE +#include #include #include -#include -#ifdef HAVE_MALLOC_H -#include -#endif #include -#else -#include "kdill.h" -#define fprintf(fmt, args...) printk(args) -#define printf printk -#define malloc (void *)DAllocMM -#define free(a) DFreeMM((addrs_t) a) -#endif -/* - * GANEV: note that we have to include "x86_64.h" _after_ including - * "kdill.h" because it needs to #undef and then re-#define a few - * symbols (namely, EAX, EBX, etc. defined in - */ #include "dill.h" #include "dill_internal.h" #include "x86_64.h" #define MOV32 0x89 -#define Mod(x) ((x)<<6) -#define RegOp(x) ((7&(x))<<3) -#define RM(x) (7&(x)) -#define ModRM(mod,reg,rm) (Mod(mod)|RegOp(reg)|RM(rm)) -#define SIB(scale, index, base) (((scale)<<6) | ((0x7 & (index))<<3) | (0x7 & (base))) +#define Mod(x) ((x) << 6) +#define RegOp(x) ((7 & (x)) << 3) +#define RM(x) (7 & (x)) +#define ModRM(mod, reg, rm) (Mod(mod) | RegOp(reg) | RM(rm)) +#define SIB(scale, index, base) \ + (((scale) << 6) | ((0x7 & (index)) << 3) | (0x7 & (base))) #define INSN_OUT(s, i) printf("Bad opout, line %d\n", __LINE__) -#define x86_64_savei(s, imm) -#define x86_64_andi(s, dest, src, imm) x86_64_arith3i(s, 0x4, 0x2, dest, src, imm) +#define x86_64_savei(s, imm) +#define x86_64_andi(s, dest, src, imm) \ + x86_64_arith3i(s, 0x4, 0x2, dest, src, imm) -static void x86_64_push_reg(dill_stream s, int src); -static void x86_64_pop_reg(dill_stream s, int src); +static void +x86_64_push_reg(dill_stream s, int src); +static void +x86_64_pop_reg(dill_stream s, int src); #define x86_64_nop(s) BYTE_OUT1(s, 0x90) -static char *char_regs[] = {"AL", "CL", "DL", "BL", "AH", "CH", "DH", "BH"}; -static char *short_regs[] = {"AX", "CX", "DX", "BX", "SP", "BP", "SI", "DI"}; -static char *int_regs[] = {"EAX", "ECX", "EDX", "EBX", "ESP", "EBP", "ESI", "EDI"}; -char *long_regs[] = {"RAX", "RCX", "RDX", "RBX", "RSP", "RBP", "RSI", "RDI"}; -char *float_regs[] = {"RAX", "RCX", "RDX", "RBX", "RSP", "RBP", "RSI", "RDI"}; +static char* char_regs[] = {"AL", "CL", "DL", "BL", "AH", "CH", "DH", "BH"}; +static char* short_regs[] = {"AX", "CX", "DX", "BX", "SP", "BP", "SI", "DI"}; +static char* int_regs[] = {"EAX", "ECX", "EDX", "EBX", + "ESP", "EBP", "ESI", "EDI"}; +char* long_regs[] = {"RAX", "RCX", "RDX", "RBX", "RSP", "RBP", "RSI", "RDI"}; +char* float_regs[] = {"RAX", "RCX", "RDX", "RBX", "RSP", "RBP", "RSI", "RDI"}; #define IREG 0 #define FREG 1 #define _temp_reg EAX #define _frame_reg EBP -#define roundup(a,b) ((a + (b-1)) & (-b)) -static void x86_64_pmov(dill_stream s, int typ, int dest, int src); +#define roundup(a, b) ((a + (b - 1)) & (-b)) +static void +x86_64_pmov(dill_stream s, int typ, int dest, int src); -static -struct basic_type_info -{ char size; +static struct basic_type_info { + char size; char align; char reg_type; } type_info[] = { - { 1, 1, IREG}, /* C */ - { 1, 1, IREG}, /* UC */ - { 2, 2, IREG}, /* S */ - { 2, 2, IREG}, /* US */ - { 4, 4, IREG}, /* I */ - { 4, 4, IREG}, /* U */ - { sizeof(uintptr_t), sizeof(uintptr_t), IREG}, /* UL */ - { sizeof(intptr_t), sizeof(intptr_t), IREG}, /* L */ - { sizeof(char*), sizeof(char*), IREG}, /* P */ - { sizeof(float), sizeof(float), FREG}, /* F */ - { sizeof(double), sizeof(double), FREG}, /* D */ - { 0, 8, IREG}, /* V */ - { -1, 8, IREG}, /* B */ - { sizeof(void*), sizeof(void*), IREG}, /* EC */ + {1, 1, IREG}, /* C */ + {1, 1, IREG}, /* UC */ + {2, 2, IREG}, /* S */ + {2, 2, IREG}, /* US */ + {4, 4, IREG}, /* I */ + {4, 4, IREG}, /* U */ + {sizeof(uintptr_t), sizeof(uintptr_t), IREG}, /* UL */ + {sizeof(intptr_t), sizeof(intptr_t), IREG}, /* L */ + {sizeof(char*), sizeof(char*), IREG}, /* P */ + {sizeof(float), sizeof(float), FREG}, /* F */ + {sizeof(double), sizeof(double), FREG}, /* D */ + {0, 8, IREG}, /* V */ + {-1, 8, IREG}, /* B */ + {sizeof(void*), sizeof(void*), IREG}, /* EC */ }; int x86_64_type_align[] = { - 1, /* C */ - 1, /* UC */ - 2, /* S */ - 2, /* US */ - 4, /* I */ - 4, /* U */ - sizeof(uintptr_t), /* UL */ - sizeof(intptr_t), /* L */ - sizeof(char*), /* P */ - 4, /* F */ - 4, /* D */ - 4, /* V */ - 4, /* B */ - sizeof(char*), /* EC */ + 1, /* C */ + 1, /* UC */ + 2, /* S */ + 2, /* US */ + 4, /* I */ + 4, /* U */ + sizeof(uintptr_t), /* UL */ + sizeof(intptr_t), /* L */ + sizeof(char*), /* P */ + 4, /* F */ + 4, /* D */ + 4, /* V */ + 4, /* B */ + sizeof(char*), /* EC */ }; int x86_64_type_size[] = { - 1, /* C */ - 1, /* UC */ - 2, /* S */ - 2, /* US */ - 4, /* I */ - 4, /* U */ - sizeof(uintptr_t), /* UL */ - sizeof(intptr_t), /* L */ - sizeof(char*), /* P */ - 4, /* F */ - 8, /* D */ - 4, /* V */ - 0, /* B */ - sizeof(char*), /* EC */ + 1, /* C */ + 1, /* UC */ + 2, /* S */ + 2, /* US */ + 4, /* I */ + 4, /* U */ + sizeof(uintptr_t), /* UL */ + sizeof(intptr_t), /* L */ + sizeof(char*), /* P */ + 4, /* F */ + 8, /* D */ + 4, /* V */ + 0, /* B */ + sizeof(char*), /* EC */ }; static void BYTE_OUT2R(dill_stream s, int rex, int insn1, int insn2) { - unsigned char *tmp_ip; + unsigned char* tmp_ip; if (s->p->cur_ip >= s->p->code_limit) { - extend_dill_stream(s); + extend_dill_stream(s); } - tmp_ip = (unsigned char *) s->p->cur_ip; + tmp_ip = (unsigned char*)s->p->cur_ip; if (rex != 0) { - *tmp_ip = (unsigned char)rex|0x40; - *(tmp_ip + 1) = (unsigned char)insn1; - *(tmp_ip + 2) = (unsigned char)insn2; + *tmp_ip = (unsigned char)rex | 0x40; + *(tmp_ip + 1) = (unsigned char)insn1; + *(tmp_ip + 2) = (unsigned char)insn2; } else { - *(tmp_ip) = (unsigned char)insn1; - *(tmp_ip + 1) = (unsigned char)insn2; + *(tmp_ip) = (unsigned char)insn1; + *(tmp_ip + 1) = (unsigned char)insn2; } - if (s->dill_debug) dump_cur_dill_insn(s); - s->p->cur_ip = ((char*)s->p->cur_ip)+2; - if (rex !=0) s->p->cur_ip++; + if (s->dill_debug) + dump_cur_dill_insn(s); + s->p->cur_ip = ((char*)s->p->cur_ip) + 2; + if (rex != 0) + s->p->cur_ip++; } static void BYTE_OUT1R(dill_stream s, int rex, int insn1) { - unsigned char *tmp_ip; + unsigned char* tmp_ip; if (s->p->cur_ip >= s->p->code_limit) { - extend_dill_stream(s); + extend_dill_stream(s); } - tmp_ip = (unsigned char *) s->p->cur_ip; + tmp_ip = (unsigned char*)s->p->cur_ip; if (rex != 0) { - *tmp_ip = (unsigned char)rex|0x40; - *(tmp_ip + 1) = (unsigned char)insn1; + *tmp_ip = (unsigned char)rex | 0x40; + *(tmp_ip + 1) = (unsigned char)insn1; } else { - *(tmp_ip) = (unsigned char)insn1; + *(tmp_ip) = (unsigned char)insn1; } - if (s->dill_debug) dump_cur_dill_insn(s); - s->p->cur_ip = ((char*)s->p->cur_ip)+1; - if (rex !=0) s->p->cur_ip++; + if (s->dill_debug) + dump_cur_dill_insn(s); + s->p->cur_ip = ((char*)s->p->cur_ip) + 1; + if (rex != 0) + s->p->cur_ip++; } static void BYTE_OUT2IR(dill_stream s, int rex, int insn1, int insn2, int imm32) { - unsigned char *tmp_ip; + unsigned char* tmp_ip; if (s->p->cur_ip >= s->p->code_limit) { - extend_dill_stream(s); + extend_dill_stream(s); } - tmp_ip = (unsigned char *) s->p->cur_ip; + tmp_ip = (unsigned char*)s->p->cur_ip; if (rex != 0) { - int tmp = imm32; - *tmp_ip = (unsigned char)rex|0x40; - *(tmp_ip + 1) = (unsigned char)insn1; - *(tmp_ip + 2) = (unsigned char)insn2; - memcpy(tmp_ip + 3, &tmp, 4); + int tmp = imm32; + *tmp_ip = (unsigned char)rex | 0x40; + *(tmp_ip + 1) = (unsigned char)insn1; + *(tmp_ip + 2) = (unsigned char)insn2; + memcpy(tmp_ip + 3, &tmp, 4); } else { - int tmp = imm32; - *(tmp_ip) = (unsigned char)insn1; - *(tmp_ip + 1) = (unsigned char)insn2; - memcpy(tmp_ip + 2, &tmp, 4); + int tmp = imm32; + *(tmp_ip) = (unsigned char)insn1; + *(tmp_ip + 1) = (unsigned char)insn2; + memcpy(tmp_ip + 2, &tmp, 4); } - if (s->dill_debug) dump_cur_dill_insn(s); - s->p->cur_ip = ((char*)s->p->cur_ip)+6; - if (rex !=0) s->p->cur_ip++; + if (s->dill_debug) + dump_cur_dill_insn(s); + s->p->cur_ip = ((char*)s->p->cur_ip) + 6; + if (rex != 0) + s->p->cur_ip++; } static void BYTE_OUT3IR(dill_stream s, int rex, int insn1, int insn2, int insn3, int imm32) { - unsigned char *tmp_ip; + unsigned char* tmp_ip; if (s->p->cur_ip >= s->p->code_limit) { - extend_dill_stream(s); + extend_dill_stream(s); } - tmp_ip = (unsigned char *) s->p->cur_ip; + tmp_ip = (unsigned char*)s->p->cur_ip; if (rex != 0) { - int tmp = imm32; - *tmp_ip = (unsigned char)rex|0x40; - *(tmp_ip + 1) = (unsigned char)insn1; - *(tmp_ip + 2) = (unsigned char)insn2; - *(tmp_ip + 3) = (unsigned char)insn3; - memcpy(tmp_ip + 4, &tmp, 4); + int tmp = imm32; + *tmp_ip = (unsigned char)rex | 0x40; + *(tmp_ip + 1) = (unsigned char)insn1; + *(tmp_ip + 2) = (unsigned char)insn2; + *(tmp_ip + 3) = (unsigned char)insn3; + memcpy(tmp_ip + 4, &tmp, 4); } else { - int tmp = imm32; - *(tmp_ip) = (unsigned char)insn1; - *(tmp_ip + 1) = (unsigned char)insn2; - *(tmp_ip + 2) = (unsigned char)insn3; - memcpy(tmp_ip + 3, &tmp, 4); + int tmp = imm32; + *(tmp_ip) = (unsigned char)insn1; + *(tmp_ip + 1) = (unsigned char)insn2; + *(tmp_ip + 2) = (unsigned char)insn3; + memcpy(tmp_ip + 3, &tmp, 4); } - if (s->dill_debug) dump_cur_dill_insn(s); - s->p->cur_ip = ((char*)s->p->cur_ip)+7; - if (rex !=0) s->p->cur_ip++; + if (s->dill_debug) + dump_cur_dill_insn(s); + s->p->cur_ip = ((char*)s->p->cur_ip) + 7; + if (rex != 0) + s->p->cur_ip++; } static void BYTE_OUT1IR(dill_stream s, int rex, int insn1, int imm32) { - unsigned char *tmp_ip; + unsigned char* tmp_ip; if (s->p->cur_ip >= s->p->code_limit) { - extend_dill_stream(s); + extend_dill_stream(s); } - tmp_ip = (unsigned char *) s->p->cur_ip; + tmp_ip = (unsigned char*)s->p->cur_ip; if (rex != 0) { - int tmp = imm32; - *tmp_ip = (unsigned char)rex|0x40; - *(tmp_ip + 1) = (unsigned char)insn1; - memcpy(tmp_ip + 2, &tmp, 4); + int tmp = imm32; + *tmp_ip = (unsigned char)rex | 0x40; + *(tmp_ip + 1) = (unsigned char)insn1; + memcpy(tmp_ip + 2, &tmp, 4); } else { - int tmp = imm32; - *(tmp_ip) = (unsigned char)insn1; - memcpy(tmp_ip + 1, &tmp, 4); + int tmp = imm32; + *(tmp_ip) = (unsigned char)insn1; + memcpy(tmp_ip + 1, &tmp, 4); } - if (s->dill_debug) dump_cur_dill_insn(s); - s->p->cur_ip = ((char*)s->p->cur_ip)+5; - if (rex !=0) s->p->cur_ip++; + if (s->dill_debug) + dump_cur_dill_insn(s); + s->p->cur_ip = ((char*)s->p->cur_ip) + 5; + if (rex != 0) + s->p->cur_ip++; } static void BYTE_OUT1LR(dill_stream s, int rex, int insn1, intptr_t imm64) { - unsigned char *tmp_ip; + unsigned char* tmp_ip; if (s->p->cur_ip >= s->p->code_limit) { - extend_dill_stream(s); + extend_dill_stream(s); } - tmp_ip = (unsigned char *) s->p->cur_ip; + tmp_ip = (unsigned char*)s->p->cur_ip; if (rex != 0) { - intptr_t tmp = imm64; - *tmp_ip = (unsigned char)rex|0x40; - *(tmp_ip + 1) = (unsigned char)insn1; - memcpy(tmp_ip + 2, &tmp, 8); + intptr_t tmp = imm64; + *tmp_ip = (unsigned char)rex | 0x40; + *(tmp_ip + 1) = (unsigned char)insn1; + memcpy(tmp_ip + 2, &tmp, 8); } else { - intptr_t tmp = imm64; - *(tmp_ip) = (unsigned char)insn1; - memcpy(tmp_ip + 1, &tmp, 8); + intptr_t tmp = imm64; + *(tmp_ip) = (unsigned char)insn1; + memcpy(tmp_ip + 1, &tmp, 8); } - if (s->dill_debug) dump_cur_dill_insn(s); - s->p->cur_ip = ((char*)s->p->cur_ip)+9; - if (rex !=0) s->p->cur_ip++; + if (s->dill_debug) + dump_cur_dill_insn(s); + s->p->cur_ip = ((char*)s->p->cur_ip) + 9; + if (rex != 0) + s->p->cur_ip++; } static void BYTE_OUT3R(dill_stream s, int rex, int insn1, int insn2, int insn3) { - unsigned char *tmp_ip; + unsigned char* tmp_ip; if (s->p->cur_ip >= s->p->code_limit) { - extend_dill_stream(s); + extend_dill_stream(s); } - tmp_ip = (unsigned char *) s->p->cur_ip; + tmp_ip = (unsigned char*)s->p->cur_ip; if (rex != 0) { - *tmp_ip = (unsigned char)rex|0x40; - *(tmp_ip + 1) = (unsigned char)insn1; - *(tmp_ip + 2) = (unsigned char)insn2; - *(tmp_ip + 3) = (unsigned char)insn3; + *tmp_ip = (unsigned char)rex | 0x40; + *(tmp_ip + 1) = (unsigned char)insn1; + *(tmp_ip + 2) = (unsigned char)insn2; + *(tmp_ip + 3) = (unsigned char)insn3; } else { - *(tmp_ip) = (unsigned char)insn1; - *(tmp_ip + 1) = (unsigned char)insn2; - *(tmp_ip + 2) = (unsigned char)insn3; + *(tmp_ip) = (unsigned char)insn1; + *(tmp_ip + 1) = (unsigned char)insn2; + *(tmp_ip + 2) = (unsigned char)insn3; } - if (s->dill_debug) dump_cur_dill_insn(s); - s->p->cur_ip = ((char*)s->p->cur_ip)+3; - if (rex !=0) s->p->cur_ip++; + if (s->dill_debug) + dump_cur_dill_insn(s); + s->p->cur_ip = ((char*)s->p->cur_ip) + 3; + if (rex != 0) + s->p->cur_ip++; } static void BYTE_OUT4R(dill_stream s, int rex, int insn1, int insn2, int insn3, int insn4) { - unsigned char *tmp_ip; + unsigned char* tmp_ip; if (s->p->cur_ip >= s->p->code_limit) { - extend_dill_stream(s); + extend_dill_stream(s); } - tmp_ip = (unsigned char *) s->p->cur_ip; + tmp_ip = (unsigned char*)s->p->cur_ip; if (rex != 0) { - *tmp_ip = (unsigned char)rex|0x40; - *(tmp_ip + 1) = (unsigned char)insn1; - *(tmp_ip + 2) = (unsigned char)insn2; - *(tmp_ip + 3) = (unsigned char)insn3; - *(tmp_ip + 4) = (unsigned char)insn4; + *tmp_ip = (unsigned char)rex | 0x40; + *(tmp_ip + 1) = (unsigned char)insn1; + *(tmp_ip + 2) = (unsigned char)insn2; + *(tmp_ip + 3) = (unsigned char)insn3; + *(tmp_ip + 4) = (unsigned char)insn4; } else { - *(tmp_ip) = (unsigned char)insn1; - *(tmp_ip + 1) = (unsigned char)insn2; - *(tmp_ip + 2) = (unsigned char)insn3; - *(tmp_ip + 3) = (unsigned char)insn4; + *(tmp_ip) = (unsigned char)insn1; + *(tmp_ip + 1) = (unsigned char)insn2; + *(tmp_ip + 2) = (unsigned char)insn3; + *(tmp_ip + 3) = (unsigned char)insn4; } - if (s->dill_debug) dump_cur_dill_insn(s); - s->p->cur_ip = ((char*)s->p->cur_ip)+4; - if (rex !=0) s->p->cur_ip++; + if (s->dill_debug) + dump_cur_dill_insn(s); + s->p->cur_ip = ((char*)s->p->cur_ip) + 4; + if (rex != 0) + s->p->cur_ip++; } static void -BYTE_OUT1R3I(dill_stream s, int insn1, int rex, int insn2, int insn3, int insn4, int imm) -{ - unsigned char *tmp_ip; +BYTE_OUT1R3I(dill_stream s, + int insn1, + int rex, + int insn2, + int insn3, + int insn4, + int imm) +{ + unsigned char* tmp_ip; if (s->p->cur_ip >= s->p->code_limit) { - extend_dill_stream(s); + extend_dill_stream(s); } - tmp_ip = (unsigned char *) s->p->cur_ip; + tmp_ip = (unsigned char*)s->p->cur_ip; if (rex != 0) { - *(tmp_ip + 0) = (unsigned char)insn1; - *(tmp_ip + 1) = (unsigned char)rex|0x40; - *(tmp_ip + 2) = (unsigned char)insn2; - *(tmp_ip + 3) = (unsigned char)insn3; - *(tmp_ip + 4) = (unsigned char)insn4; - *((int*)(tmp_ip + 5)) = imm; + *(tmp_ip + 0) = (unsigned char)insn1; + *(tmp_ip + 1) = (unsigned char)rex | 0x40; + *(tmp_ip + 2) = (unsigned char)insn2; + *(tmp_ip + 3) = (unsigned char)insn3; + *(tmp_ip + 4) = (unsigned char)insn4; + *((int*)(tmp_ip + 5)) = imm; } else { - *(tmp_ip) = (unsigned char)insn1; - *(tmp_ip + 1) = (unsigned char)insn2; - *(tmp_ip + 2) = (unsigned char)insn3; - *(tmp_ip + 3) = (unsigned char)insn4; - *((int*)(tmp_ip + 4)) = imm; + *(tmp_ip) = (unsigned char)insn1; + *(tmp_ip + 1) = (unsigned char)insn2; + *(tmp_ip + 2) = (unsigned char)insn3; + *(tmp_ip + 3) = (unsigned char)insn4; + *((int*)(tmp_ip + 4)) = imm; } - if (s->dill_debug) dump_cur_dill_insn(s); - s->p->cur_ip = ((char*)s->p->cur_ip)+8; - if (rex !=0) s->p->cur_ip++; + if (s->dill_debug) + dump_cur_dill_insn(s); + s->p->cur_ip = ((char*)s->p->cur_ip) + 8; + if (rex != 0) + s->p->cur_ip++; } static void -BYTE_OUT1R4I(dill_stream s, int insn1, int rex, int insn2, int insn3, int insn4, int insn5, int imm) -{ - unsigned char *tmp_ip; +BYTE_OUT1R4I(dill_stream s, + int insn1, + int rex, + int insn2, + int insn3, + int insn4, + int insn5, + int imm) +{ + unsigned char* tmp_ip; if (s->p->cur_ip >= s->p->code_limit) { - extend_dill_stream(s); + extend_dill_stream(s); } - tmp_ip = (unsigned char *) s->p->cur_ip; + tmp_ip = (unsigned char*)s->p->cur_ip; if (rex != 0) { - *(tmp_ip + 0) = (unsigned char)insn1; - *(tmp_ip + 1) = (unsigned char)rex|0x40; - *(tmp_ip + 2) = (unsigned char)insn2; - *(tmp_ip + 3) = (unsigned char)insn3; - *(tmp_ip + 4) = (unsigned char)insn4; - *(tmp_ip + 5) = (unsigned char)insn5; - *((int*)(tmp_ip + 6)) = imm; + *(tmp_ip + 0) = (unsigned char)insn1; + *(tmp_ip + 1) = (unsigned char)rex | 0x40; + *(tmp_ip + 2) = (unsigned char)insn2; + *(tmp_ip + 3) = (unsigned char)insn3; + *(tmp_ip + 4) = (unsigned char)insn4; + *(tmp_ip + 5) = (unsigned char)insn5; + *((int*)(tmp_ip + 6)) = imm; } else { - *(tmp_ip) = (unsigned char)insn1; - *(tmp_ip + 1) = (unsigned char)insn2; - *(tmp_ip + 2) = (unsigned char)insn3; - *(tmp_ip + 3) = (unsigned char)insn4; - *(tmp_ip + 4) = (unsigned char)insn5; - *((int*)(tmp_ip + 5)) = imm; + *(tmp_ip) = (unsigned char)insn1; + *(tmp_ip + 1) = (unsigned char)insn2; + *(tmp_ip + 2) = (unsigned char)insn3; + *(tmp_ip + 3) = (unsigned char)insn4; + *(tmp_ip + 4) = (unsigned char)insn5; + *((int*)(tmp_ip + 5)) = imm; } - if (s->dill_debug) dump_cur_dill_insn(s); - s->p->cur_ip = ((char*)s->p->cur_ip)+9; - if (rex !=0) s->p->cur_ip++; + if (s->dill_debug) + dump_cur_dill_insn(s); + s->p->cur_ip = ((char*)s->p->cur_ip) + 9; + if (rex != 0) + s->p->cur_ip++; } static void BYTE_OUT1R3(dill_stream s, int insn1, int rex, int insn2, int insn3, int insn4) { - unsigned char *tmp_ip; + unsigned char* tmp_ip; if (s->p->cur_ip >= s->p->code_limit) { - extend_dill_stream(s); + extend_dill_stream(s); } - tmp_ip = (unsigned char *) s->p->cur_ip; + tmp_ip = (unsigned char*)s->p->cur_ip; if (rex != 0) { - *(tmp_ip + 0) = (unsigned char)insn1; - *(tmp_ip + 1)= (unsigned char)rex|0x40; - *(tmp_ip + 2) = (unsigned char)insn2; - *(tmp_ip + 3) = (unsigned char)insn3; - *(tmp_ip + 4) = (unsigned char)insn4; + *(tmp_ip + 0) = (unsigned char)insn1; + *(tmp_ip + 1) = (unsigned char)rex | 0x40; + *(tmp_ip + 2) = (unsigned char)insn2; + *(tmp_ip + 3) = (unsigned char)insn3; + *(tmp_ip + 4) = (unsigned char)insn4; } else { - *(tmp_ip) = (unsigned char)insn1; - *(tmp_ip + 1) = (unsigned char)insn2; - *(tmp_ip + 2) = (unsigned char)insn3; - *(tmp_ip + 3) = (unsigned char)insn4; + *(tmp_ip) = (unsigned char)insn1; + *(tmp_ip + 1) = (unsigned char)insn2; + *(tmp_ip + 2) = (unsigned char)insn3; + *(tmp_ip + 3) = (unsigned char)insn4; } - if (s->dill_debug) dump_cur_dill_insn(s); - s->p->cur_ip = ((char*)s->p->cur_ip)+4; - if (rex !=0) s->p->cur_ip++; + if (s->dill_debug) + dump_cur_dill_insn(s); + s->p->cur_ip = ((char*)s->p->cur_ip) + 4; + if (rex != 0) + s->p->cur_ip++; } static void -BYTE_OUT1R4(dill_stream s, int insn1, int rex, int insn2, int insn3, int insn4, int insn5) -{ - unsigned char *tmp_ip; +BYTE_OUT1R4(dill_stream s, + int insn1, + int rex, + int insn2, + int insn3, + int insn4, + int insn5) +{ + unsigned char* tmp_ip; if (s->p->cur_ip >= s->p->code_limit) { - extend_dill_stream(s); + extend_dill_stream(s); } - tmp_ip = (unsigned char *) s->p->cur_ip; + tmp_ip = (unsigned char*)s->p->cur_ip; if (rex != 0) { - *(tmp_ip + 0) = (unsigned char)insn1; - *(tmp_ip + 1)= (unsigned char)rex|0x40; - *(tmp_ip + 2) = (unsigned char)insn2; - *(tmp_ip + 3) = (unsigned char)insn3; - *(tmp_ip + 4) = (unsigned char)insn4; - *(tmp_ip + 5) = (unsigned char)insn5; + *(tmp_ip + 0) = (unsigned char)insn1; + *(tmp_ip + 1) = (unsigned char)rex | 0x40; + *(tmp_ip + 2) = (unsigned char)insn2; + *(tmp_ip + 3) = (unsigned char)insn3; + *(tmp_ip + 4) = (unsigned char)insn4; + *(tmp_ip + 5) = (unsigned char)insn5; } else { - *(tmp_ip) = (unsigned char)insn1; - *(tmp_ip + 1) = (unsigned char)insn2; - *(tmp_ip + 2) = (unsigned char)insn3; - *(tmp_ip + 3) = (unsigned char)insn4; - *(tmp_ip + 4) = (unsigned char)insn5; + *(tmp_ip) = (unsigned char)insn1; + *(tmp_ip + 1) = (unsigned char)insn2; + *(tmp_ip + 2) = (unsigned char)insn3; + *(tmp_ip + 3) = (unsigned char)insn4; + *(tmp_ip + 4) = (unsigned char)insn5; } - if (s->dill_debug) dump_cur_dill_insn(s); - s->p->cur_ip = ((char*)s->p->cur_ip)+5; - if (rex !=0) s->p->cur_ip++; + if (s->dill_debug) + dump_cur_dill_insn(s); + s->p->cur_ip = ((char*)s->p->cur_ip) + 5; + if (rex != 0) + s->p->cur_ip++; } static void -BYTE_OUT1R5(dill_stream s, int insn1, int rex, int insn2, int insn3, int insn4, int insn5, int insn6) -{ - unsigned char *tmp_ip; +BYTE_OUT1R5(dill_stream s, + int insn1, + int rex, + int insn2, + int insn3, + int insn4, + int insn5, + int insn6) +{ + unsigned char* tmp_ip; if (s->p->cur_ip >= s->p->code_limit) { - extend_dill_stream(s); + extend_dill_stream(s); } - tmp_ip = (unsigned char *) s->p->cur_ip; + tmp_ip = (unsigned char*)s->p->cur_ip; if (rex != 0) { - *(tmp_ip + 0) = (unsigned char)insn1; - *(tmp_ip + 1)= (unsigned char)rex|0x40; - *(tmp_ip + 2) = (unsigned char)insn2; - *(tmp_ip + 3) = (unsigned char)insn3; - *(tmp_ip + 4) = (unsigned char)insn4; - *(tmp_ip + 5) = (unsigned char)insn5; - *(tmp_ip + 6) = (unsigned char)insn6; + *(tmp_ip + 0) = (unsigned char)insn1; + *(tmp_ip + 1) = (unsigned char)rex | 0x40; + *(tmp_ip + 2) = (unsigned char)insn2; + *(tmp_ip + 3) = (unsigned char)insn3; + *(tmp_ip + 4) = (unsigned char)insn4; + *(tmp_ip + 5) = (unsigned char)insn5; + *(tmp_ip + 6) = (unsigned char)insn6; } else { - *(tmp_ip) = (unsigned char)insn1; - *(tmp_ip + 1) = (unsigned char)insn2; - *(tmp_ip + 2) = (unsigned char)insn3; - *(tmp_ip + 3) = (unsigned char)insn4; - *(tmp_ip + 4) = (unsigned char)insn5; - *(tmp_ip + 5) = (unsigned char)insn6; + *(tmp_ip) = (unsigned char)insn1; + *(tmp_ip + 1) = (unsigned char)insn2; + *(tmp_ip + 2) = (unsigned char)insn3; + *(tmp_ip + 3) = (unsigned char)insn4; + *(tmp_ip + 4) = (unsigned char)insn5; + *(tmp_ip + 5) = (unsigned char)insn6; } - if (s->dill_debug) dump_cur_dill_insn(s); - s->p->cur_ip = ((char*)s->p->cur_ip)+6; - if (rex !=0) s->p->cur_ip++; + if (s->dill_debug) + dump_cur_dill_insn(s); + s->p->cur_ip = ((char*)s->p->cur_ip) + 6; + if (rex != 0) + s->p->cur_ip++; } -#define x86_64_movi(s, dest, src) x86_64_pmov(s, DILL_I, dest, src) -#define x86_64_movl(s, dest, src) x86_64_pmov(s, DILL_L, dest, src) -#define x86_64_movd(s, dest, src) x86_64_pmov(s, DILL_D, dest, src) -#define x86_64_movf(s, dest, src) x86_64_pmov(s, DILL_F, dest, src) +#define x86_64_movi(s, dest, src) x86_64_pmov(s, DILL_I, dest, src) +#define x86_64_movl(s, dest, src) x86_64_pmov(s, DILL_L, dest, src) +#define x86_64_movd(s, dest, src) x86_64_pmov(s, DILL_D, dest, src) +#define x86_64_movf(s, dest, src) x86_64_pmov(s, DILL_F, dest, src) -static void x86_64_push_reg(dill_stream s, int src) +static void +x86_64_push_reg(dill_stream s, int src) { int rex = 0; - if (src > RDI) rex|= REX_B; - BYTE_OUT1R(s, rex, 0x50+(src&0x7)); + if (src > RDI) + rex |= REX_B; + BYTE_OUT1R(s, rex, 0x50 + (src & 0x7)); } -static void x86_64_pop_reg(dill_stream s, int src) +static void +x86_64_pop_reg(dill_stream s, int src) { int rex = 0; - if (src > RDI) rex|= REX_B; - BYTE_OUT1R(s, rex, 0x58+(src&0x7)); + if (src > RDI) + rex |= REX_B; + BYTE_OUT1R(s, rex, 0x58 + (src & 0x7)); } - static void -x86_64_rshai(dill_stream s, int dest, int src, int imm) +x86_64_rshai(dill_stream s, int dest, int src, int imm) { int rex = REX_W; - if (dest !=src) { + if (dest != src) { x86_64_movl(s, dest, src); } - if (dest > RDI) rex |= REX_B; + if (dest > RDI) + rex |= REX_B; BYTE_OUT3R(s, rex, 0xc1, ModRM(0x3, 0x7, dest), imm & 0xff); } static void -x86_64_rshi(dill_stream s, int dest, int src, int imm) +x86_64_rshi(dill_stream s, int dest, int src, int imm) { int rex = REX_W; - if (dest !=src) { - x86_64_movl(s, dest, src); + if (dest != src) { + x86_64_movl(s, dest, src); } - if (dest > RDI) rex |= REX_B; + if (dest > RDI) + rex |= REX_B; BYTE_OUT3R(s, rex, 0xc1, ModRM(0x3, 0x5, dest), imm & 0xff); } static void -x86_64_lshi(dill_stream s, int dest, int src, int imm) +x86_64_lshi(dill_stream s, int dest, int src, int imm) { int rex = REX_W; if (dest != src) { x86_64_movl(s, dest, src); } - if (dest > RDI) rex |= REX_B; + if (dest > RDI) + rex |= REX_B; BYTE_OUT3R(s, rex, 0xc1, ModRM(0x3, 0x4, dest), imm & 0xff); } @@ -504,26 +540,34 @@ static void x86_64_pmov(dill_stream s, int typ, int dest, int src) { int rex = 0; - if ((typ == DILL_L) || (typ == DILL_UL) || (typ == DILL_P)) rex = REX_W; - if (src > RDI) rex |= REX_R; - if (dest > RDI) rex |= REX_B; + if ((typ == DILL_L) || (typ == DILL_UL) || (typ == DILL_P)) + rex = REX_W; + if (src > RDI) + rex |= REX_R; + if (dest > RDI) + rex |= REX_B; if (src != dest) { - switch (typ) { - case DILL_D: case DILL_F: - // The 0x29 form of this instruction is not supported by valgrind - // the 0x28 version reverses the operands. - // BYTE_OUT1(s, 0x66); - // BYTE_OUT3R(s, rex, 0x0f, 0x29, ModRM(0x3, src, dest)); - rex = 0; - if (dest > RDI) rex |= REX_R; - if (src > RDI) rex |= REX_B; - BYTE_OUT1(s, 0x66); - BYTE_OUT3R(s, rex, 0x0f, 0x28, ModRM(0x3, dest, src)); - break; - default: - BYTE_OUT2R(s, rex, MOV32, ModRM(0x3, src, dest)); - break; - } + switch (typ) { + case DILL_D: + case DILL_F: + // The 0x29 form of this instruction is not supported by + // valgrind + // the 0x28 version reverses the operands. + // BYTE_OUT1(s, 0x66); + // BYTE_OUT3R(s, rex, 0x0f, 0x29, ModRM(0x3, src, + // dest)); + rex = 0; + if (dest > RDI) + rex |= REX_R; + if (src > RDI) + rex |= REX_B; + BYTE_OUT1(s, 0x66); + BYTE_OUT3R(s, rex, 0x0f, 0x28, ModRM(0x3, dest, src)); + break; + default: + BYTE_OUT2R(s, rex, MOV32, ModRM(0x3, src, dest)); + break; + } } } @@ -531,105 +575,110 @@ static void x86_64_sxmov(dill_stream s, int typ, int src, int dest) { int rex = REX_W; - if (src > RDI) rex |= REX_R; - if (dest > RDI) rex |= REX_B; + if (src > RDI) + rex |= REX_R; + if (dest > RDI) + rex |= REX_B; if (src != dest) { switch (typ) { - case DILL_C: - BYTE_OUT3R(s, rex, 0x0f, 0xbe, ModRM(0x3, src, dest)); - break; - case DILL_UC: - BYTE_OUT3R(s, rex, 0x0f, 0xb6, ModRM(0x3, src, dest)); - break; - case DILL_S: - BYTE_OUT3R(s, rex, 0x0f, 0xbf, ModRM(0x3, src, dest)); - break; - case DILL_US: - BYTE_OUT3R(s, rex, 0x0f, 0xb7, ModRM(0x3, src, dest)); - break; - } - } -} - -extern void x86_64_farith2(s, b1, typ, dest, src) -dill_stream s; -int b1; -int typ; -int dest; -int src; + case DILL_C: + BYTE_OUT3R(s, rex, 0x0f, 0xbe, ModRM(0x3, src, dest)); + break; + case DILL_UC: + BYTE_OUT3R(s, rex, 0x0f, 0xb6, ModRM(0x3, src, dest)); + break; + case DILL_S: + BYTE_OUT3R(s, rex, 0x0f, 0xbf, ModRM(0x3, src, dest)); + break; + case DILL_US: + BYTE_OUT3R(s, rex, 0x0f, 0xb7, ModRM(0x3, src, dest)); + break; + } + } +} + +extern void +x86_64_farith2(dill_stream s, int b1, int typ, int dest, int src) { /* this is fneg */ int rex = 0; int op = 0xf3; - if (src > XMM7) rex |= REX_B; - if (dest > XMM7) rex |= REX_R; - + if (src > XMM7) + rex |= REX_B; + if (dest > XMM7) + rex |= REX_R; + /* clear dest */ { - int rex1 = 0; - if (dest > XMM7) rex1 = REX_R|REX_B; - BYTE_OUT3R(s, rex1, 0x0f, 0x57, ModRM(0x3, dest, dest)); // GSE really rex1? Late fix. - } - if (typ == DILL_D) op = 0xf2; + int rex1 = 0; + if (dest > XMM7) + rex1 = REX_R | REX_B; + BYTE_OUT3R(s, rex1, 0x0f, 0x57, + ModRM(0x3, dest, dest)); // GSE really rex1? Late fix. + } + if (typ == DILL_D) + op = 0xf2; BYTE_OUT1R3(s, op, rex, 0x0f, 0x5c, ModRM(0x3, dest, src)); } -extern void x86_64_farith(s, b1, typ, dest, src1, src2) -dill_stream s; -int b1; -int typ; -int dest; -int src1; -int src2; +extern void +x86_64_farith(dill_stream s, int b1, int typ, int dest, int src1, int src2) { int rex = 0; int op = 0xf3; - + if (src2 == dest) { - /* protect src2 from overwrite (below) */ - x86_64_movd(s, XMM0, src2); - src2 = XMM0; - } - if (src2 > XMM7) rex |= REX_B; - if (dest > XMM7) rex |= REX_R; - if (src1 != dest) x86_64_movd(s, dest, src1); - if (typ == DILL_D) op = 0xf2; + /* protect src2 from overwrite (below) */ + x86_64_movd(s, XMM0, src2); + src2 = XMM0; + } + if (src2 > XMM7) + rex |= REX_B; + if (dest > XMM7) + rex |= REX_R; + if (src1 != dest) + x86_64_movd(s, dest, src1); + if (typ == DILL_D) + op = 0xf2; BYTE_OUT1R3(s, op, rex, 0x0f, b1, ModRM(0x3, dest, src2)); } static void -x86_64_seti(dill_stream s, int r, int val) +x86_64_seti(dill_stream s, int r, int val) { int rex = 0; - if (r > RDI) rex |= REX_B; + if (r > RDI) + rex |= REX_B; BYTE_OUT1IR(s, rex, 0xb8 + (0x7 & r), val); } -static void +static void x86_64_setl(dill_stream s, int r, IMM_TYPE val) { int rex = REX_W; - if (r > RDI) rex |= REX_B; + if (r > RDI) + rex |= REX_B; BYTE_OUT1LR(s, rex, 0xb8 + ((0x7) & r), val); } -extern void -x86_64_setp(dill_stream s, int type, int junk, int r, void *val) +extern void +x86_64_setp(dill_stream s, int type, int junk, int r, void* val) { int rex = REX_W; union { - intptr_t l; - void *a; + intptr_t l; + void* a; } a; a.a = val; - if (r > RDI) rex |= REX_B; + if (r > RDI) + rex |= REX_B; BYTE_OUT1LR(s, rex, 0xb8 + ((0x7) & r), a.l); } extern int x86_64_local(dill_stream s, int type) { - x86_64_mach_info smi = (x86_64_mach_info) s->p->mach_info; + x86_64_mach_info smi = (x86_64_mach_info)s->p->mach_info; s->p->used_frame++; smi->act_rec_size += roundup(type_info[type].size, smi->stack_align); @@ -639,7 +688,7 @@ x86_64_local(dill_stream s, int type) extern int x86_64_localb(dill_stream s, int size) { - x86_64_mach_info smi = (x86_64_mach_info) s->p->mach_info; + x86_64_mach_info smi = (x86_64_mach_info)s->p->mach_info; s->p->used_frame++; smi->act_rec_size = roundup(smi->act_rec_size, size); @@ -647,64 +696,67 @@ x86_64_localb(dill_stream s, int size) return (-smi->act_rec_size) + smi->stack_constant_offset; } -extern int x86_64_local_op(dill_stream s, int flag, int val) +extern int +x86_64_local_op(dill_stream s, int flag, int val) { int size = val; if (flag == 0) { - size = type_info[val].size; + size = type_info[val].size; } return x86_64_localb(s, size); -} +} #define BEGIN_FLOAT_SAVE 64 extern void x86_64_save_restore_op(dill_stream s, int save_restore, int type, int reg) { - x86_64_mach_info smi = (x86_64_mach_info) s->p->mach_info; + x86_64_mach_info smi = (x86_64_mach_info)s->p->mach_info; int offset = 0; switch (type) { - case DILL_D: case DILL_F: - offset = reg * smi->stack_align + BEGIN_FLOAT_SAVE; - break; + case DILL_D: + case DILL_F: + offset = reg * smi->stack_align + BEGIN_FLOAT_SAVE; + break; default: - if ((reg == RBX) || ((reg >= R12) && (reg <= R15))) { - /* RBX, R12-R15 inclusive are callee-saved, caller doesn't save */ - return; - } - switch (reg) { - case RDI: - offset = 0; - break; - case RSI: - offset = 8; - break; - case RDX: - offset = 16; - break; - case RCX: - offset = 24; - break; - case R8: - offset = 32; - break; - case R9: - offset = 40; - break; - case R10: - offset = 48; - break; - case R11: - offset = 56; - break; - default: - printf("x86_64 save_restore called with int reg %d\n", reg); - assert(0); /* shouldn't happen */ - } + if ((reg == RBX) || ((reg >= R12) && (reg <= R15))) { + /* RBX, R12-R15 inclusive are callee-saved, caller doesn't save + */ + return; + } + switch (reg) { + case RDI: + offset = 0; + break; + case RSI: + offset = 8; + break; + case RDX: + offset = 16; + break; + case RCX: + offset = 24; + break; + case R8: + offset = 32; + break; + case R9: + offset = 40; + break; + case R10: + offset = 48; + break; + case R11: + offset = 56; + break; + default: + printf("x86_64 save_restore called with int reg %d\n", reg); + assert(0); /* shouldn't happen */ + } } if (save_restore == 0) { /* save */ - x86_64_pstorei(s, type, 0, reg, _frame_reg, smi->save_base + offset); - } else { /* restore */ - x86_64_ploadi(s, type, 0, reg, _frame_reg, smi->save_base + offset); + x86_64_pstorei(s, type, 0, reg, _frame_reg, smi->save_base + offset); + } else { /* restore */ + x86_64_ploadi(s, type, 0, reg, _frame_reg, smi->save_base + offset); } s->p->used_frame++; } @@ -730,11 +782,11 @@ x86_64_save_restore_op(dill_stream s, int save_restore, int type, int reg) * %rdi used to pass 1st argument to functions No * %r8 used to pass 5th argument to functions No * %r9 used to pass 6th argument to functions No - * %r10 temporary register, used for passing a + * %r10 temporary register, used for passing a * function?s static chain pointer No * %r11 temporary register No * %r12-r15 callee-saved registers Yes - * %xmm0-%xmm1 used to pass and return floating point + * %xmm0-%xmm1 used to pass and return floating point * arguments No * %xmm2-%xmm7 used to pass floating point arguments No * %xmm8-%xmm15 temporary registers No @@ -742,7 +794,7 @@ x86_64_save_restore_op(dill_stream s, int save_restore, int type, int reg) * %st0 temporary register; used to return long double args No * %st1 temporary registers; used to return long double args No * %st2-%st7 temporary registers No - * %fs Reserved for system use (as thread specific data register) + * %fs Reserved for system use (as thread specific data register) Figure 3.33: Register Save Area (modified -- GSE ) Register Offset @@ -769,89 +821,126 @@ static int arg_regs[] = {RCX, RDX, R8, R9}; static void save_required_regs(dill_stream s, int force) { - if (s->p->call_table.call_count != 0) force++; + if (s->p->call_table.call_count != 0) + force++; #ifdef OSX if (force) { - dill_andii(s, ESP, ESP, -16); /* make sure it's multiple of 16 */ + dill_andii(s, ESP, ESP, -16); /* make sure it's multiple of 16 */ } #endif /* callee is supposed to save these */ - if (force || dill_wasused(&s->p->var_i, EBX) || dill_wasused(&s->p->tmp_i, EBX)) { - x86_64_push_reg(s, EBX); + if (force || dill_wasused(&s->p->var_i, EBX) || + dill_wasused(&s->p->tmp_i, EBX)) { + x86_64_push_reg(s, EBX); } - if (force || dill_wasused(&s->p->var_i, R12) || dill_wasused(&s->p->tmp_i, R12)) { - x86_64_push_reg(s, R12); + if (force || dill_wasused(&s->p->var_i, R12) || + dill_wasused(&s->p->tmp_i, R12)) { + x86_64_push_reg(s, R12); } - if (force || dill_wasused(&s->p->var_i, R13) || dill_wasused(&s->p->tmp_i, R13)) { - x86_64_push_reg(s, R13); + if (force || dill_wasused(&s->p->var_i, R13) || + dill_wasused(&s->p->tmp_i, R13)) { + x86_64_push_reg(s, R13); } - if (force || dill_wasused(&s->p->var_i, R14) || dill_wasused(&s->p->tmp_i, R14)) { - x86_64_push_reg(s, R14); + if (force || dill_wasused(&s->p->var_i, R14) || + dill_wasused(&s->p->tmp_i, R14)) { + x86_64_push_reg(s, R14); } - if (force || dill_wasused(&s->p->var_i, R15) || dill_wasused(&s->p->tmp_i, R15)) { - x86_64_push_reg(s, R15); + if (force || dill_wasused(&s->p->var_i, R15) || + dill_wasused(&s->p->tmp_i, R15)) { + x86_64_push_reg(s, R15); } } -static int -generate_prefix_code(dill_stream s, int force, int ar_size, dill_reg *arglist) +static int +generate_prefix_code(dill_stream s, int force, int ar_size, dill_reg* arglist) { int end, start = (int)((char*)s->p->cur_ip - (char*)s->p->code_base); int i, int_arg_count, float_arg_count; arg_info_list args = s->p->c_param_args; - if ((s->p->c_param_count > 0) || s->p->used_frame || (s->p->call_table.call_count != 0) || force) { - x86_64_push_reg(s, EBP); - x86_64_movl(s, EBP, ESP); + if ((s->p->c_param_count > 0) || s->p->used_frame || + (s->p->call_table.call_count != 0) || force) { + x86_64_push_reg(s, EBP); + x86_64_movl(s, EBP, ESP); } if (force || s->p->used_frame || (s->p->call_table.call_count != 0)) { - /* do local space reservation */ - dill_subli(s, ESP, ESP, ar_size); + /* do local space reservation */ + dill_subli(s, ESP, ESP, ar_size); } save_required_regs(s, force); - int_arg_count = float_arg_count = 0; /* reset */ + int_arg_count = float_arg_count = 0; /* reset */ for (i = 0; i < s->p->c_param_count; i++) { - int came_in_a_reg = 0; - switch (args[i].type) { - case DILL_D: case DILL_F: - came_in_a_reg = (float_arg_count++ < 8); - break; - default: - came_in_a_reg = (int_arg_count++ < 6); - break; - } - if (came_in_a_reg && (args[i].in_reg == -1)) { - /* not enough regs for this, store it to the stack */ - int real_offset = args[i].offset; - x86_64_pstorei(s, args[i].type, 0, arg_regs[int_arg_count-1], EBP, - real_offset); - continue; - } - if (came_in_a_reg && args[i].is_register) { - switch(args[i].type) { - case DILL_D: case DILL_F: - x86_64_movd(s, args[i].in_reg, float_arg_count-1); - break; - case DILL_UC: case DILL_C: case DILL_US: case DILL_S: - x86_64_sxmov(s, args[i].type, args[i].in_reg, arg_regs[int_arg_count-1]); - break; - default: - x86_64_movl(s, args[i].in_reg, arg_regs[int_arg_count-1]); - break; - } - continue; - } - if (args[i].is_register) { - /* general offset from fp*/ - int real_offset = args[i].offset; - x86_64_ploadi(s, args[i].type, 0, args[i].in_reg, EBP, real_offset); - } - + int came_in_a_reg = 0; + switch (args[i].type) { + case DILL_D: + case DILL_F: +#ifdef USE_WINDOWS_CALLS + came_in_a_reg = (float_arg_count + int_arg_count) < 4; + float_arg_count++; +#else + came_in_a_reg = (float_arg_count++ < 8); +#endif + break; + default: +#ifdef USE_WINDOWS_CALLS + came_in_a_reg = (float_arg_count + int_arg_count) < 4; + int_arg_count++; +#else + came_in_a_reg = (int_arg_count++ < 6); +#endif + break; + } + if (came_in_a_reg && (args[i].in_reg == -1)) { + /* not enough regs for this, store it to the stack */ + int real_offset = args[i].offset; + x86_64_pstorei(s, args[i].type, 0, arg_regs[int_arg_count - 1], EBP, + real_offset); + continue; + } + if (came_in_a_reg && args[i].is_register) { + switch (args[i].type) { + case DILL_D: + case DILL_F: +#ifdef USE_WINDOWS_CALLS + x86_64_movd(s, args[i].in_reg, + float_arg_count + int_arg_count - 1); +#else + x86_64_movd(s, args[i].in_reg, float_arg_count - 1); +#endif + break; + case DILL_UC: + case DILL_C: + case DILL_US: + case DILL_S: +#ifdef USE_WINDOWS_CALLS + x86_64_sxmov(s, args[i].type, args[i].in_reg, + arg_regs[float_arg_count + int_arg_count - 1]); +#else + x86_64_sxmov(s, args[i].type, args[i].in_reg, + arg_regs[int_arg_count - 1]); +#endif + break; + default: +#ifdef USE_WINDOWS_CALLS + x86_64_movl(s, args[i].in_reg, + arg_regs[int_arg_count + float_arg_count - 1]); +#else + x86_64_movl(s, args[i].in_reg, arg_regs[int_arg_count - 1]); +#endif + break; + } + continue; + } + if (args[i].is_register) { + /* general offset from fp*/ + int real_offset = args[i].offset; + x86_64_ploadi(s, args[i].type, 0, args[i].in_reg, EBP, real_offset); + } } end = (int)((char*)s->p->cur_ip - (char*)s->p->code_base); @@ -859,20 +948,23 @@ generate_prefix_code(dill_stream s, int force, int ar_size, dill_reg *arglist) } extern void -x86_64_proc_start(dill_stream s, char *subr_name, int arg_count, arg_info_list args, - dill_reg *arglist) +x86_64_proc_start(dill_stream s, + char* subr_name, + int arg_count, + arg_info_list args, + dill_reg* arglist) { int i, int_arg_count, float_arg_count; int cur_arg_offset = 0; - x86_64_mach_info smi = (x86_64_mach_info) s->p->mach_info; + x86_64_mach_info smi = (x86_64_mach_info)s->p->mach_info; smi->pending_prefix = 0; smi->last_proc_ret_end = 0; /* leave some space */ x86_64_local(s, DILL_D); smi->conversion_word = x86_64_local(s, DILL_D); smi->fcu_word = x86_64_local(s, DILL_I); - smi->save_base = x86_64_localb(s, BEGIN_FLOAT_SAVE + 16*16); + smi->save_base = x86_64_localb(s, BEGIN_FLOAT_SAVE + 16 * 16); s->p->used_frame = 0; cur_arg_offset = 16; @@ -880,82 +972,122 @@ x86_64_proc_start(dill_stream s, char *subr_name, int arg_count, arg_info_list a float_arg_count = 0; for (i = 0; i < arg_count; i++) { args[i].in_reg = -1; - args[i].out_reg = -1; - args[i].is_register = 0; - if (arglist != NULL) arglist[i] = -1; - if ((args[i].type != DILL_F) && (args[i].type != DILL_D) && (int_arg_count < 6)) { - args[i].offset = smi->save_base + int_arg_count*8; - int_arg_count++; - if (int_arg_count <= 4) { - dill_reg tmp_reg; - if (dill_raw_getreg(s, &tmp_reg, args[i].type, DILL_VAR)) { - args[i].in_reg = tmp_reg; - if (arglist != NULL) arglist[i] = tmp_reg; - args[i].is_register = 1; - } - } else { - if (int_arg_count <= (sizeof(arg_regs) / sizeof(arg_regs[0]))) { - args[i].is_register = 1; - args[i].in_reg = arg_regs[int_arg_count-1]; - } - } - } else if (((args[i].type == DILL_F) || (args[i].type == DILL_D)) && (float_arg_count < 8)) { - args[i].offset = smi->save_base + BEGIN_FLOAT_SAVE + float_arg_count*8; - float_arg_count++; - if (float_arg_count <= 4) { - dill_reg tmp_reg; - if (dill_raw_getreg(s, &tmp_reg, args[i].type, DILL_VAR)) { - args[i].in_reg = tmp_reg; - if (arglist != NULL) arglist[i] = tmp_reg; - args[i].is_register = 1; - } - } - } else { - args[i].offset = cur_arg_offset; - cur_arg_offset += roundup(type_info[(int)args[i].type].size, smi->stack_align); - } - } - /* make local space reservation constant big so we have a word to patch */ - /* use the nop op code so that if we don't use all of it we get nops */ - (void) generate_prefix_code(s, 1 /* force */, 0x909090, arglist); - - smi->backpatch_offset = (int)((char*)s->p->cur_ip - (char*)s->p->code_base); + args[i].out_reg = -1; + args[i].is_register = 0; + if (arglist != NULL) + arglist[i] = -1; +#ifdef USE_WINDOWS_CALLS + if ((args[i].type != DILL_F) && (args[i].type != DILL_D) && + (int_arg_count + float_arg_count < 4)) { + cur_arg_offset += + roundup(type_info[(int)args[i].type].size, smi->stack_align); +#else + if ((args[i].type != DILL_F) && (args[i].type != DILL_D) && + (int_arg_count < 6)) { +#endif + + args[i].offset = smi->save_base + int_arg_count * 8; + int_arg_count++; +#ifdef USE_WINDOWS_CALLS + if (int_arg_count + float_arg_count <= 4) { +#else + if (int_arg_count <= 4) { +#endif + dill_reg tmp_reg; + if (dill_raw_getreg(s, &tmp_reg, args[i].type, DILL_VAR)) { + args[i].in_reg = tmp_reg; + if (arglist != NULL) + arglist[i] = tmp_reg; + args[i].is_register = 1; + } + } else { +#ifdef USE_WINDOWS_CALLS + if (int_arg_count + float_arg_count <= + (sizeof(arg_regs) / sizeof(arg_regs[0]))) { +#else + if (int_arg_count <= (sizeof(arg_regs) / sizeof(arg_regs[0]))) { +#endif + args[i].is_register = 1; + args[i].in_reg = arg_regs[int_arg_count - 1]; + } + } +#ifdef USE_WINDOWS_CALLS + } else if (((args[i].type == DILL_F) || (args[i].type == DILL_D)) && + (int_arg_count + float_arg_count < 4)) { + cur_arg_offset += + roundup(type_info[(int)args[i].type].size, smi->stack_align); +#else + } else if (((args[i].type == DILL_F) || (args[i].type == DILL_D)) && + (float_arg_count < 8)) { +#endif + + args[i].offset = + smi->save_base + BEGIN_FLOAT_SAVE + float_arg_count * 8; + float_arg_count++; + if (float_arg_count <= 4) { + dill_reg tmp_reg; + if (dill_raw_getreg(s, &tmp_reg, args[i].type, DILL_VAR)) { + args[i].in_reg = tmp_reg; + if (arglist != NULL) + arglist[i] = tmp_reg; + args[i].is_register = 1; + } + } + } else { + args[i].offset = cur_arg_offset; + cur_arg_offset += + roundup(type_info[(int)args[i].type].size, smi->stack_align); + } + } + /* make local space reservation constant big so we have a word to patch */ + /* use the nop op code so that if we don't use all of it we get nops */ + (void)generate_prefix_code(s, 1 /* force */, 0x909090, arglist); + + smi->backpatch_offset = (int)((char*)s->p->cur_ip - (char*)s->p->code_base); } static void -x86_64_proc_ret(dill_stream s) +x86_64_proc_ret(dill_stream s) { - x86_64_mach_info smi = (x86_64_mach_info) s->p->mach_info; + x86_64_mach_info smi = (x86_64_mach_info)s->p->mach_info; int force = 0; - if (s->p->call_table.call_count != 0) force++; + if (s->p->call_table.call_count != 0) + force++; - /* last thing was a ret and there's not a label here, we don't need another ret */ + /* last thing was a ret and there's not a label here, we don't need another + * ret */ if ((smi->last_proc_ret_end == s->p->cur_ip) && !dill_is_label_mark(s)) - return; + return; - if (force || dill_wasused(&s->p->var_i, R15) || dill_wasused(&s->p->tmp_i, R15)) { - x86_64_pop_reg(s, R15); + if (force || dill_wasused(&s->p->var_i, R15) || + dill_wasused(&s->p->tmp_i, R15)) { + x86_64_pop_reg(s, R15); } - if (force || dill_wasused(&s->p->var_i, R14) || dill_wasused(&s->p->tmp_i, R14)) { - x86_64_pop_reg(s, R14); + if (force || dill_wasused(&s->p->var_i, R14) || + dill_wasused(&s->p->tmp_i, R14)) { + x86_64_pop_reg(s, R14); } - if (force || dill_wasused(&s->p->var_i, R13) || dill_wasused(&s->p->tmp_i, R13)) { - x86_64_pop_reg(s, R13); + if (force || dill_wasused(&s->p->var_i, R13) || + dill_wasused(&s->p->tmp_i, R13)) { + x86_64_pop_reg(s, R13); } - if (force || dill_wasused(&s->p->var_i, R12) || dill_wasused(&s->p->tmp_i, R12)) { - x86_64_pop_reg(s, R12); + if (force || dill_wasused(&s->p->var_i, R12) || + dill_wasused(&s->p->tmp_i, R12)) { + x86_64_pop_reg(s, R12); } - if (force || dill_wasused(&s->p->var_i, EBX) || dill_wasused(&s->p->tmp_i, EBX)) { - x86_64_pop_reg(s, EBX); + if (force || dill_wasused(&s->p->var_i, EBX) || + dill_wasused(&s->p->tmp_i, EBX)) { + x86_64_pop_reg(s, EBX); } - if ((s->p->c_param_count > 0) || s->p->used_frame || (s->p->call_table.call_count != 0)) { + if ((s->p->c_param_count > 0) || s->p->used_frame || + (s->p->call_table.call_count != 0)) { x86_64_movl(s, ESP, EBP); - x86_64_pop_reg(s, EBP); + x86_64_pop_reg(s, EBP); } BYTE_OUT1(s, 0xc3); smi->last_proc_ret_end = s->p->cur_ip; } - + static unsigned char ld_opcodes[] = { 0x8a, /* DILL_C */ 0x8a, /* DILL_UC */ @@ -973,139 +1105,165 @@ static unsigned char ld_opcodes[] = { 0x8b, /* DILL_EC */ }; -static void x86_64_clear(s, dest) -dill_stream s; -int dest; +static void +x86_64_clear(dill_stream s, int dest) { int rex = REX_W; - if (dest > RDI) rex |= REX_B | REX_R; - BYTE_OUT2R(s, rex, 0x33, ModRM(0x3, dest, dest)); /* xor dest, dest */ + if (dest > RDI) + rex |= REX_B | REX_R; + BYTE_OUT2R(s, rex, 0x33, ModRM(0x3, dest, dest)); /* xor dest, dest */ } extern void -x86_64_ploadi(dill_stream s, int type, int junk, int dest, int src, IMM_TYPE offset) +x86_64_ploadi(dill_stream s, + int type, + int junk, + int dest, + int src, + IMM_TYPE offset) { unsigned char opcode = ld_opcodes[type]; int tmp_dest = dest; - x86_64_mach_info smi = (x86_64_mach_info) s->p->mach_info; + x86_64_mach_info smi = (x86_64_mach_info)s->p->mach_info; int rex = 0; int float_op = 0; if ((type == DILL_L) || (type == DILL_UL) || (type == DILL_P)) { - rex = REX_W; + rex = REX_W; } switch (type) { - case DILL_F: - float_op = 0xf3; - break; + case DILL_F: + float_op = 0xf3; + break; case DILL_D: - float_op = 0xf2; - break; + float_op = 0xf2; + break; case DILL_C: case DILL_UC: - if (dest >= ESP) { - /* movb doesn't work for big regs, load to eax */ - tmp_dest = EAX; - } - if (type == DILL_UC) { - /* clear high bytes */ - if (src == tmp_dest) { - /* don't destroy source */ - tmp_dest = EAX; - } - x86_64_clear(s, tmp_dest); - } - break; - case DILL_S: case DILL_US: - if (type == DILL_US) { - /* clear high bytes */ - if (src == tmp_dest) { - /* don't destroy source */ - tmp_dest = EAX; - } - x86_64_clear(s, tmp_dest); - } - BYTE_OUT1(s, 0x66); - break; - case DILL_L: case DILL_UL: case DILL_P: + if (dest >= ESP) { + /* movb doesn't work for big regs, load to eax */ + tmp_dest = EAX; + } + if (type == DILL_UC) { + /* clear high bytes */ + if (src == tmp_dest) { + /* don't destroy source */ + tmp_dest = EAX; + } + x86_64_clear(s, tmp_dest); + } + break; + case DILL_S: + case DILL_US: + if (type == DILL_US) { + /* clear high bytes */ + if (src == tmp_dest) { + /* don't destroy source */ + tmp_dest = EAX; + } + x86_64_clear(s, tmp_dest); + } + BYTE_OUT1(s, 0x66); + break; + case DILL_L: + case DILL_UL: + case DILL_P: /* fall through */ default: - break; + break; } if (smi->pending_prefix != 0) { BYTE_OUT1(s, smi->pending_prefix); - smi->pending_prefix = 0; + smi->pending_prefix = 0; } - if (src > RDI) rex |= REX_B; - if (tmp_dest > RDI) rex |= REX_R; + if (src > RDI) + rex |= REX_B; + if (tmp_dest > RDI) + rex |= REX_R; if (((0x7 & src) == RSP) && - (((offset & 0xffffffff80000000) == 0) || - ((offset & 0xffffffff80000000) == 0xffffffff80000000))) { - /* must use SIB because ModRM has a discontinuity */ - if (offset == 0) { - if (float_op != 0) { - BYTE_OUT1R4(s, float_op, rex, 0x0f, 0x10, ModRM(0x0, tmp_dest, 0x4), SIB(0,4,src)); - } else { - BYTE_OUT3R(s, rex, opcode, ModRM(0x0, tmp_dest, 0x4),SIB(0,4,src)); - } - } else if (((intptr_t)offset <= 127) && ((intptr_t)offset > -128)) { - if (float_op != 0) { - BYTE_OUT1R5(s, float_op, rex, 0x0f, 0x10, ModRM(0x1, tmp_dest, src), SIB(0,ESP,0x4),offset & 0xff); - } else { - BYTE_OUT4R(s, rex, opcode, ModRM(0x1, tmp_dest, src), SIB(0,ESP,0x4), offset & 0xff); - } - } else { - if (float_op != 0) { - BYTE_OUT1R4I(s, float_op, rex, 0x0f, 0x10, ModRM(0x2, tmp_dest, 0x4), SIB(0,4,src), offset); - } else { - BYTE_OUT3IR(s, rex, opcode, ModRM(0x2, tmp_dest, 0x4), SIB(0,4,src),offset); - } - } + (((offset & 0xffffffff80000000) == 0) || + ((offset & 0xffffffff80000000) == 0xffffffff80000000))) { + /* must use SIB because ModRM has a discontinuity */ + if (offset == 0) { + if (float_op != 0) { + BYTE_OUT1R4(s, float_op, rex, 0x0f, 0x10, + ModRM(0x0, tmp_dest, 0x4), SIB(0, 4, src)); + } else { + BYTE_OUT3R(s, rex, opcode, ModRM(0x0, tmp_dest, 0x4), + SIB(0, 4, src)); + } + } else if (((intptr_t)offset <= 127) && ((intptr_t)offset > -128)) { + if (float_op != 0) { + BYTE_OUT1R5(s, float_op, rex, 0x0f, 0x10, + ModRM(0x1, tmp_dest, src), SIB(0, ESP, 0x4), + offset & 0xff); + } else { + BYTE_OUT4R(s, rex, opcode, ModRM(0x1, tmp_dest, src), + SIB(0, ESP, 0x4), offset & 0xff); + } + } else { + if (float_op != 0) { + BYTE_OUT1R4I(s, float_op, rex, 0x0f, 0x10, + ModRM(0x2, tmp_dest, 0x4), SIB(0, 4, src), + (int)offset); + } else { + BYTE_OUT3IR(s, rex, opcode, ModRM(0x2, tmp_dest, 0x4), + SIB(0, 4, src), (int)offset); + } + } } else { - if ((offset == 0) && ((src &0x7) != 5)){ /* avoid discontinuity in ModRM */ - if (float_op != 0) { - BYTE_OUT1R3(s, float_op, rex, 0x0f, 0x10, ModRM(0x0, tmp_dest, src)); - } else { - BYTE_OUT2R(s, rex, opcode, ModRM(0x0, tmp_dest, src)); - } - } else if (((intptr_t)offset <= 127) && ((intptr_t)offset > -128)) { - if (float_op != 0) { - BYTE_OUT1R4(s, float_op, rex, 0x0f, 0x10, ModRM(0x1, tmp_dest, src), offset & 0xff); - } else { - BYTE_OUT3R(s, rex, opcode, ModRM(0x1, tmp_dest, src), offset & 0xff); - } - } else if (((offset & 0xffffffff80000000) == 0) || - ((offset & 0xffffffff80000000) == 0xffffffff80000000)) { - if (float_op != 0) { - BYTE_OUT1R3I(s, float_op, rex, 0x0f, 0x10, ModRM(0x2, tmp_dest, src), offset); - } else { - BYTE_OUT2IR(s, rex, opcode, ModRM(0x2, tmp_dest, src), offset); - } - } else { - /* really big offset */ - if (dest != src) { - /* use dest since it'll be destroyed by the load */ - x86_64_setl(s, dest, offset); - x86_64_pload(s, type, 0, dest, src, dest); - } else { - /* destroy src, but since it's the same as dest, it's lost anyway */ - x86_64_arith3i(s, 0, DILL_L, src, src, offset); - x86_64_ploadi(s, type, 0, dest, src, 0); - } - } - } - switch(type){ + if ((offset == 0) && + ((src & 0x7) != 5)) { /* avoid discontinuity in ModRM */ + if (float_op != 0) { + BYTE_OUT1R3(s, float_op, rex, 0x0f, 0x10, + ModRM(0x0, tmp_dest, src)); + } else { + BYTE_OUT2R(s, rex, opcode, ModRM(0x0, tmp_dest, src)); + } + } else if (((intptr_t)offset <= 127) && ((intptr_t)offset > -128)) { + if (float_op != 0) { + BYTE_OUT1R4(s, float_op, rex, 0x0f, 0x10, + ModRM(0x1, tmp_dest, src), offset & 0xff); + } else { + BYTE_OUT3R(s, rex, opcode, ModRM(0x1, tmp_dest, src), + offset & 0xff); + } + } else if (((offset & 0xffffffff80000000) == 0) || + ((offset & 0xffffffff80000000) == 0xffffffff80000000)) { + if (float_op != 0) { + BYTE_OUT1R3I(s, float_op, rex, 0x0f, 0x10, + ModRM(0x2, tmp_dest, src), (int)offset); + } else { + BYTE_OUT2IR(s, rex, opcode, ModRM(0x2, tmp_dest, src), + (int)offset); + } + } else { + /* really big offset */ + if (dest != src) { + /* use dest since it'll be destroyed by the load */ + x86_64_setl(s, dest, offset); + x86_64_pload(s, type, 0, dest, src, dest); + } else { + /* destroy src, but since it's the same as dest, it's lost + * anyway */ + x86_64_arith3i(s, 0, DILL_L, src, src, offset); + x86_64_ploadi(s, type, 0, dest, src, 0); + } + } + } + switch (type) { case DILL_C: - x86_64_lshi(s, dest, tmp_dest, 56); - x86_64_rshai(s, dest, dest, 56); - break; + x86_64_lshi(s, dest, tmp_dest, 56); + x86_64_rshai(s, dest, dest, 56); + break; case DILL_S: - x86_64_lshi(s, dest, tmp_dest, 48); - x86_64_rshai(s, dest, dest, 48); - break; - case DILL_UC: case DILL_US: - if (dest != tmp_dest) - x86_64_movi(s, dest, tmp_dest); - break; + x86_64_lshi(s, dest, tmp_dest, 48); + x86_64_rshai(s, dest, dest, 48); + break; + case DILL_UC: + case DILL_US: + if (dest != tmp_dest) + x86_64_movi(s, dest, tmp_dest); + break; } } @@ -1116,149 +1274,171 @@ x86_64_pload(dill_stream s, int type, int junk, int dest, int src1, int src2) int tmp_dest = dest; int clear_high_bytes_after_load = 0; - x86_64_mach_info smi = (x86_64_mach_info) s->p->mach_info; + x86_64_mach_info smi = (x86_64_mach_info)s->p->mach_info; int rex = 0; int float_op = 0; if ((type == DILL_L) || (type == DILL_UL) || (type == DILL_P)) { - rex = REX_W; + rex = REX_W; } - switch(type){ + switch (type) { case DILL_C: case DILL_UC: - if (dest >= ESP) { - /* movb doesn't work for big regs, load to eax */ - tmp_dest = EAX; - } - if (type == DILL_UC) { - /* clear high bytes */ - if ((src1 == tmp_dest) || (src2 == tmp_dest)) { - /* don't destroy source */ - tmp_dest = EAX; - } - if ((src1 == EAX) || (src2 == EAX)) { - clear_high_bytes_after_load = 1; - } else { - x86_64_clear(s, tmp_dest); - } - } - break; - case DILL_S: case DILL_US: - if (type == DILL_US) { - /* clear high bytes */ - if ((src1 == tmp_dest) || (src2 == tmp_dest)) { - /* don't destroy source */ - tmp_dest = EAX; - } - if ((src1 == EAX) || (src2 == EAX)) { - clear_high_bytes_after_load = 1; - } else { - x86_64_clear(s, tmp_dest); - } - } - BYTE_OUT1(s, 0x66); - break; + if (dest >= ESP) { + /* movb doesn't work for big regs, load to eax */ + tmp_dest = EAX; + } + if (type == DILL_UC) { + /* clear high bytes */ + if ((src1 == tmp_dest) || (src2 == tmp_dest)) { + /* don't destroy source */ + tmp_dest = EAX; + } + if ((src1 == EAX) || (src2 == EAX)) { + clear_high_bytes_after_load = 1; + } else { + x86_64_clear(s, tmp_dest); + } + } + break; + case DILL_S: + case DILL_US: + if (type == DILL_US) { + /* clear high bytes */ + if ((src1 == tmp_dest) || (src2 == tmp_dest)) { + /* don't destroy source */ + tmp_dest = EAX; + } + if ((src1 == EAX) || (src2 == EAX)) { + clear_high_bytes_after_load = 1; + } else { + x86_64_clear(s, tmp_dest); + } + } + BYTE_OUT1(s, 0x66); + break; case DILL_F: - float_op = 0xf3; - break; + float_op = 0xf3; + break; case DILL_D: - float_op = 0xf2; - break; - case DILL_L: case DILL_UL: case DILL_P: - if (smi->stack_align == 4) { - type = DILL_I; - } + float_op = 0xf2; + break; + case DILL_L: + case DILL_UL: + case DILL_P: + if (smi->stack_align == 4) { + type = DILL_I; + } } if (smi->pending_prefix != 0) { BYTE_OUT1(s, smi->pending_prefix); - smi->pending_prefix = 0; - } - if ((src2 & 0x7) == 0x5) { /* avoid SIB discontinuity */ - int tmp = src1; - src1 = src2; - src2 = tmp; - } - if (src1 > RDI) rex |= REX_X; - if (src2 > RDI) rex |= REX_B; - if (tmp_dest > RDI) rex |= REX_R; + smi->pending_prefix = 0; + } + if ((src2 & 0x7) == 0x5) { /* avoid SIB discontinuity */ + int tmp = src1; + src1 = src2; + src2 = tmp; + } + if (src1 > RDI) + rex |= REX_X; + if (src2 > RDI) + rex |= REX_B; + if (tmp_dest > RDI) + rex |= REX_R; if (float_op != 0) { - BYTE_OUT1R4(s, float_op, rex, 0x0f, 0x10, ModRM(0x0, tmp_dest, 0x4), SIB(0,src1,src2)); + BYTE_OUT1R4(s, float_op, rex, 0x0f, 0x10, ModRM(0x0, tmp_dest, 0x4), + SIB(0, src1, src2)); } else { - BYTE_OUT3R(s, rex, opcode, ModRM(0x0, tmp_dest, 0x4), SIB(0,src1,src2)); + BYTE_OUT3R(s, rex, opcode, ModRM(0x0, tmp_dest, 0x4), + SIB(0, src1, src2)); } - switch(type){ + switch (type) { case DILL_C: - x86_64_lshi(s, dest, tmp_dest, 56); - x86_64_rshai(s, dest, dest, 56); - break; + x86_64_lshi(s, dest, tmp_dest, 56); + x86_64_rshai(s, dest, dest, 56); + break; case DILL_S: - x86_64_lshi(s, dest, tmp_dest, 48); - x86_64_rshai(s, dest, dest, 48); - break; - case DILL_UC: case DILL_US: - if (dest != tmp_dest) { - if (clear_high_bytes_after_load) { - int bits = 56; - if (type == DILL_US) bits = 48; - x86_64_lshi(s, dest, tmp_dest, bits); - x86_64_rshi(s, dest, dest, bits); - } else { - x86_64_movi(s, dest, tmp_dest); - } - } - break; + x86_64_lshi(s, dest, tmp_dest, 48); + x86_64_rshai(s, dest, dest, 48); + break; + case DILL_UC: + case DILL_US: + if (dest != tmp_dest) { + if (clear_high_bytes_after_load) { + int bits = 56; + if (type == DILL_US) + bits = 48; + x86_64_lshi(s, dest, tmp_dest, bits); + x86_64_rshi(s, dest, dest, bits); + } else { + x86_64_movi(s, dest, tmp_dest); + } + } + break; } } extern void -x86_64_pbsloadi(dill_stream s, int type, int junk, int dest, int src, IMM_TYPE offset) +x86_64_pbsloadi(dill_stream s, + int type, + int junk, + int dest, + int src, + IMM_TYPE offset) { int rex = 0; int fdest = dest; int ltype = type; switch (type) { case DILL_D: - ltype = DILL_L; - fdest = dest; - dest = EAX; - break; + ltype = DILL_L; + fdest = dest; + dest = EAX; + break; case DILL_F: - ltype = DILL_I; - fdest = dest; - dest = EAX; - break; + ltype = DILL_I; + fdest = dest; + dest = EAX; + break; } x86_64_ploadi(s, ltype, junk, dest, src, offset); - if (dest > RDI) rex |= REX_B; - switch(type) { + if (dest > RDI) + rex |= REX_B; + switch (type) { case DILL_F: - rex = 0; - if (fdest > RDI) rex |= REX_R; - x86_64_bswap(s, 0, DILL_I, EAX, EAX); - BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, fdest, EAX)); - break; + rex = 0; + if (fdest > RDI) + rex |= REX_R; + x86_64_bswap(s, 0, DILL_I, EAX, EAX); + BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, fdest, EAX)); + break; case DILL_D: - rex = REX_W; - if (fdest > RDI) rex |= REX_R; - x86_64_bswap(s, 0, DILL_L, EAX, EAX); - BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, fdest, EAX)); - break; - case DILL_L: case DILL_UL: case DILL_P: - rex |= REX_W; - /* falling through */ - case DILL_I: case DILL_U: - BYTE_OUT2R(s, rex, 0x0f, 0xc8 + (dest&0x7)); /* byteswap dest */ - break; - case DILL_S: case DILL_US: - /* byteswap 32 bits and shift down 16 */ - BYTE_OUT2R(s, rex, 0x0f, 0xc8 + (dest&0x7)); /* byteswap dest */ - x86_64_rshi(s, dest, dest, 16); - break; - case DILL_C: case DILL_UC: - break; + rex = REX_W; + if (fdest > RDI) + rex |= REX_R; + x86_64_bswap(s, 0, DILL_L, EAX, EAX); + BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, fdest, EAX)); + break; + case DILL_L: + case DILL_UL: + case DILL_P: + rex |= REX_W; + /* falling through */ + case DILL_I: + case DILL_U: + BYTE_OUT2R(s, rex, 0x0f, 0xc8 + (dest & 0x7)); /* byteswap dest */ + break; + case DILL_S: + case DILL_US: + /* byteswap 32 bits and shift down 16 */ + BYTE_OUT2R(s, rex, 0x0f, 0xc8 + (dest & 0x7)); /* byteswap dest */ + x86_64_rshi(s, dest, dest, 16); + break; + case DILL_C: + case DILL_UC: + break; } } - extern void x86_64_pbsload(dill_stream s, int type, int junk, int dest, int src1, int src2) { @@ -1267,43 +1447,51 @@ x86_64_pbsload(dill_stream s, int type, int junk, int dest, int src1, int src2) int ltype = type; switch (type) { case DILL_D: - ltype = DILL_L; - fdest = dest; - dest = EAX; - break; + ltype = DILL_L; + fdest = dest; + dest = EAX; + break; case DILL_F: - ltype = DILL_I; - fdest = dest; - dest = EAX; - break; + ltype = DILL_I; + fdest = dest; + dest = EAX; + break; } - if (dest > RDI) rex |= REX_B; + if (dest > RDI) + rex |= REX_B; x86_64_pload(s, ltype, junk, dest, src1, src2); - switch(type) { + switch (type) { case DILL_F: - rex = 0; - x86_64_bswap(s, 0, DILL_I, EAX, EAX); - if (fdest > RDI) rex |= REX_R; - BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, fdest, EAX)); - break; + rex = 0; + x86_64_bswap(s, 0, DILL_I, EAX, EAX); + if (fdest > RDI) + rex |= REX_R; + BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, fdest, EAX)); + break; case DILL_D: - rex = REX_W; - if (fdest > RDI) rex |= REX_R; - x86_64_bswap(s, 0, DILL_L, EAX, EAX); - BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, fdest, EAX)); - break; - case DILL_L: case DILL_UL: case DILL_P: - rex |= REX_W; - case DILL_I: case DILL_U: - BYTE_OUT2R(s, rex, 0x0f, 0xc8 + (dest&0x7)); /* byteswap dest */ - break; - case DILL_S: case DILL_US: - /* byteswap 32 bits and shift down 16 */ - BYTE_OUT2R(s, rex, 0x0f, 0xc8 + (dest&0x7)); /* byteswap dest */ - x86_64_rshi(s, dest, dest, 16); - break; - case DILL_C: case DILL_UC: - break; + rex = REX_W; + if (fdest > RDI) + rex |= REX_R; + x86_64_bswap(s, 0, DILL_L, EAX, EAX); + BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, fdest, EAX)); + break; + case DILL_L: + case DILL_UL: + case DILL_P: + rex |= REX_W; + case DILL_I: + case DILL_U: + BYTE_OUT2R(s, rex, 0x0f, 0xc8 + (dest & 0x7)); /* byteswap dest */ + break; + case DILL_S: + case DILL_US: + /* byteswap 32 bits and shift down 16 */ + BYTE_OUT2R(s, rex, 0x0f, 0xc8 + (dest & 0x7)); /* byteswap dest */ + x86_64_rshi(s, dest, dest, 16); + break; + case DILL_C: + case DILL_UC: + break; } } @@ -1324,137 +1512,165 @@ static unsigned char st_opcodes[] = { 0x89, /* DILL_EC */ }; extern void -x86_64_pstorei(dill_stream s, int type, int junk, int dest, int src, IMM_TYPE offset) -{ - x86_64_mach_info smi = (x86_64_mach_info) s->p->mach_info; +x86_64_pstorei(dill_stream s, + int type, + int junk, + int dest, + int src, + IMM_TYPE offset) +{ + x86_64_mach_info smi = (x86_64_mach_info)s->p->mach_info; int rex = 0, float_op = 0; if ((type == DILL_L) || (type == DILL_UL) || (type == DILL_P)) { - rex = REX_W; + rex = REX_W; } - switch(type) { - case DILL_C: case DILL_UC: - if (dest >= ESP) { - /* movb doesn't work for big regs, move to eax */ - x86_64_movi(s, EAX, dest); - dest = EAX; - } - break; + switch (type) { + case DILL_C: + case DILL_UC: + if (dest >= ESP) { + /* movb doesn't work for big regs, move to eax */ + x86_64_movi(s, EAX, dest); + dest = EAX; + } + break; } switch (type) { case DILL_F: - float_op = 0xf3; - break; + float_op = 0xf3; + break; case DILL_D: - float_op = 0xf2; - break; - case DILL_S: case DILL_US: - BYTE_OUT1(s, 0x66); - break; + float_op = 0xf2; + break; + case DILL_S: + case DILL_US: + BYTE_OUT1(s, 0x66); + break; default: - break; + break; } if (smi->pending_prefix != 0) { BYTE_OUT1(s, smi->pending_prefix); - smi->pending_prefix = 0; - } - if (dest > RDI) rex |= REX_R; - if (src > RDI) rex |= REX_B; - if (((src&0x7) == ESP) && - (((offset & 0xffffffff80000000) == 0) || - ((offset & 0xffffffff80000000) == 0xffffffff80000000))) { - if (((intptr_t)offset <= 127) && ((intptr_t)offset > -128)) { - if (float_op != 0) { - BYTE_OUT1R5(s, float_op, rex, 0x0f, 0x11, ModRM(0x1, dest, src), SIB(0x0,ESP,0x4), offset & 0xff); - } else { - BYTE_OUT4R(s, rex, st_opcodes[type], ModRM(0x1, dest, src), SIB(0x0,ESP,0x4), offset & 0xff); - } - } else { - if (float_op != 0) { - BYTE_OUT1R4I(s, float_op, rex, 0x0f, 0x11, ModRM(0x2, dest, 0x4), SIB(0,4,src), offset); - } else { - BYTE_OUT3IR(s, rex, st_opcodes[type], ModRM(0x2, dest, 0x4), SIB(0,4,src),offset); - } - } + smi->pending_prefix = 0; + } + if (dest > RDI) + rex |= REX_R; + if (src > RDI) + rex |= REX_B; + if (((src & 0x7) == ESP) && + (((offset & 0xffffffff80000000) == 0) || + ((offset & 0xffffffff80000000) == 0xffffffff80000000))) { + if (((intptr_t)offset <= 127) && ((intptr_t)offset > -128)) { + if (float_op != 0) { + BYTE_OUT1R5(s, float_op, rex, 0x0f, 0x11, ModRM(0x1, dest, src), + SIB(0x0, ESP, 0x4), offset & 0xff); + } else { + BYTE_OUT4R(s, rex, st_opcodes[type], ModRM(0x1, dest, src), + SIB(0x0, ESP, 0x4), offset & 0xff); + } + } else { + if (float_op != 0) { + BYTE_OUT1R4I(s, float_op, rex, 0x0f, 0x11, + ModRM(0x2, dest, 0x4), SIB(0, 4, src), + (int)offset); + } else { + BYTE_OUT3IR(s, rex, st_opcodes[type], ModRM(0x2, dest, 0x4), + SIB(0, 4, src), (int)offset); + } + } } else { - if ((offset == 0) && ((src &0x7) != 5)){ /* avoid discontinuity in ModRM */ - if (float_op != 0) { - BYTE_OUT1R3(s, float_op, rex, 0x0f, 0x11, ModRM(0x0, dest, src)); - } else { - BYTE_OUT2R(s, rex, st_opcodes[type], ModRM(0x0, dest, src)); - } - } else if (((intptr_t)offset <= 127) && ((intptr_t)offset > -128)) { - if (float_op != 0) { - BYTE_OUT1R4(s, float_op, rex, 0x0f, 0x11, ModRM(0x1, dest, src), offset & 0xff); - } else { - BYTE_OUT3R(s, rex, st_opcodes[type], ModRM(0x1, dest, src), offset & 0xff); - } - } else if (((offset & 0xffffffff80000000) == 0) || - ((offset & 0xffffffff80000000) == 0xffffffff80000000)) { - /* safe INT offset using only low 31 bits */ - if (float_op != 0) { - BYTE_OUT1R3I(s, float_op, rex, 0x0f, 0x11, ModRM(0x2, dest, src), offset); - } else { - BYTE_OUT2IR(s, rex, st_opcodes[type], ModRM(0x2, dest, src), offset); - } - } else { - x86_64_push_reg(s, src); - x86_64_arith3i(s, 0, DILL_L, src, src, offset); - x86_64_pstorei(s, type, 0, dest, src, 0); - x86_64_pop_reg(s, src); - } + if ((offset == 0) && + ((src & 0x7) != 5)) { /* avoid discontinuity in ModRM */ + if (float_op != 0) { + BYTE_OUT1R3(s, float_op, rex, 0x0f, 0x11, + ModRM(0x0, dest, src)); + } else { + BYTE_OUT2R(s, rex, st_opcodes[type], ModRM(0x0, dest, src)); + } + } else if (((intptr_t)offset <= 127) && ((intptr_t)offset > -128)) { + if (float_op != 0) { + BYTE_OUT1R4(s, float_op, rex, 0x0f, 0x11, ModRM(0x1, dest, src), + offset & 0xff); + } else { + BYTE_OUT3R(s, rex, st_opcodes[type], ModRM(0x1, dest, src), + offset & 0xff); + } + } else if (((offset & 0xffffffff80000000) == 0) || + ((offset & 0xffffffff80000000) == 0xffffffff80000000)) { + /* safe INT offset using only low 31 bits */ + if (float_op != 0) { + BYTE_OUT1R3I(s, float_op, rex, 0x0f, 0x11, + ModRM(0x2, dest, src), (int)offset); + } else { + BYTE_OUT2IR(s, rex, st_opcodes[type], ModRM(0x2, dest, src), + (int)offset); + } + } else { + x86_64_push_reg(s, src); + x86_64_arith3i(s, 0, DILL_L, src, src, offset); + x86_64_pstorei(s, type, 0, dest, src, 0); + x86_64_pop_reg(s, src); + } } } extern void x86_64_pstore(dill_stream s, int type, int junk, int dest, int src1, int src2) { - x86_64_mach_info smi = (x86_64_mach_info) s->p->mach_info; + x86_64_mach_info smi = (x86_64_mach_info)s->p->mach_info; int rex = 0, float_op = 0; if ((type == DILL_L) || (type == DILL_UL) || (type == DILL_P)) { - rex = REX_W; + rex = REX_W; } switch (type) { case DILL_F: - float_op = 0xf3; - break; + float_op = 0xf3; + break; case DILL_D: - float_op = 0xf2; - break; - case DILL_S: case DILL_US: - BYTE_OUT1(s, 0x66); - break; + float_op = 0xf2; + break; + case DILL_S: + case DILL_US: + BYTE_OUT1(s, 0x66); + break; default: - break; + break; } if (smi->pending_prefix != 0) { BYTE_OUT1(s, smi->pending_prefix); - smi->pending_prefix = 0; - } - if ((src2 & 0x7) == 0x5) { /* avoid SIB discontinuity */ - int tmp = src1; - src1 = src2; - src2 = tmp; - } - if (src1 > RDI) rex |= REX_X; - if (src2 > RDI) rex |= REX_B; - if (dest > RDI) rex |= REX_R; + smi->pending_prefix = 0; + } + if ((src2 & 0x7) == 0x5) { /* avoid SIB discontinuity */ + int tmp = src1; + src1 = src2; + src2 = tmp; + } + if (src1 > RDI) + rex |= REX_X; + if (src2 > RDI) + rex |= REX_B; + if (dest > RDI) + rex |= REX_R; if (float_op != 0) { - BYTE_OUT1R4(s, float_op, rex, 0x0f, 0x11, ModRM(0x0, dest, 0x4), SIB(0,src1,src2)); + BYTE_OUT1R4(s, float_op, rex, 0x0f, 0x11, ModRM(0x0, dest, 0x4), + SIB(0, src1, src2)); } else { - BYTE_OUT3R(s, rex, st_opcodes[type], ModRM(0x0, dest, 0x4), SIB(0,src1,src2)); + BYTE_OUT3R(s, rex, st_opcodes[type], ModRM(0x0, dest, 0x4), + SIB(0, src1, src2)); } } -extern double dill_x86_64_hidden_ULtoD(unsigned long a); -extern unsigned long dill_x86_64_hidden_DtoUL(double a); +extern double +dill_x86_64_hidden_ULtoD(size_t a); +extern size_t +dill_x86_64_hidden_DtoUL(double a); -extern void x86_64_div(dill_stream s, int op3, int op, int dest, int src1, - int src2) +extern void +x86_64_div(dill_stream s, int op3, int op, int dest, int src1, int src2) { } -extern void x86_64_divi(dill_stream s, int op3, int op, int dest, int src, - IMM_TYPE imm) +extern void +x86_64_divi(dill_stream s, int op3, int op, int dest, int src, IMM_TYPE imm) { } @@ -1464,182 +1680,198 @@ x86_64_mov(dill_stream s, int type, int junk, int dest, int src) x86_64_pmov(s, type, dest, src); } -extern void x86_64_arith3(s, op, typ, dest, src1, src2) -dill_stream s; -int op; -int typ; -int dest; -int src1; -int src2; +extern void +x86_64_arith3(dill_stream s, int op, int typ, int dest, int src1, int src2) { - int commut = ( op != 0x2b); /* subtract not commutative */ + int commut = (op != 0x2b); /* subtract not commutative */ int rex = 0; if ((typ == DILL_L) || (typ == DILL_UL) || (typ == DILL_P)) { - rex = REX_W; + rex = REX_W; } if (commut && (dest == src1)) { - if (dest > RDI) rex |= REX_R; - if (src2 > RDI) rex |= REX_B; - BYTE_OUT2R(s, rex, op, ModRM(0x3, dest, src2)); + if (dest > RDI) + rex |= REX_R; + if (src2 > RDI) + rex |= REX_B; + BYTE_OUT2R(s, rex, op, ModRM(0x3, dest, src2)); } else if (commut && (dest == src2)) { - if (dest > RDI) rex |= REX_R; - if (src1 > RDI) rex |= REX_B; - BYTE_OUT2R(s, rex, op, ModRM(0x3, dest, src1)); + if (dest > RDI) + rex |= REX_R; + if (src1 > RDI) + rex |= REX_B; + BYTE_OUT2R(s, rex, op, ModRM(0x3, dest, src1)); } else if (dest == src2) { - assert(op == 0x2b); /* must be subtract */ - int rex1 = rex, rex2 = rex; - if (dest > RDI) rex1 |= REX_B; - BYTE_OUT2R(s, rex1, 0xf7, ModRM(0x3, 0x3, dest)); /* neg src2/dest */ - if (dest > RDI) rex2 |= REX_R; - if (src1 > RDI) rex2 |= REX_B; - BYTE_OUT2R(s, rex2, 0x03, ModRM(0x3, dest, src1)); /* add src1, dest */ + assert(op == 0x2b); /* must be subtract */ + int rex1 = rex, rex2 = rex; + if (dest > RDI) + rex1 |= REX_B; + BYTE_OUT2R(s, rex1, 0xf7, ModRM(0x3, 0x3, dest)); /* neg src2/dest */ + if (dest > RDI) + rex2 |= REX_R; + if (src1 > RDI) + rex2 |= REX_B; + BYTE_OUT2R(s, rex2, 0x03, ModRM(0x3, dest, src1)); /* add src1, dest */ } else { - int rex1 = rex, rex2 = rex; - if (dest > RDI) rex1 |= REX_B; - if (src1 > RDI) rex1 |= REX_R; - BYTE_OUT2R(s, rex1, MOV32, ModRM(0x3, src1, dest)); - if (src2 > RDI) rex2 |= REX_B; - if (dest > RDI) rex2 |= REX_R; - BYTE_OUT2R(s, rex2, op, ModRM(0x3, dest, src2)); + int rex1 = rex, rex2 = rex; + if (dest > RDI) + rex1 |= REX_B; + if (src1 > RDI) + rex1 |= REX_R; + BYTE_OUT2R(s, rex1, MOV32, ModRM(0x3, src1, dest)); + if (src2 > RDI) + rex2 |= REX_B; + if (dest > RDI) + rex2 |= REX_R; + BYTE_OUT2R(s, rex2, op, ModRM(0x3, dest, src2)); } } -extern void x86_64_arith2(s, op, subop, dest, src) -dill_stream s; -int op; -int subop; -int dest; -int src; +extern void +x86_64_arith2(dill_stream s, int op, int subop, int dest, int src) { if (op == 0) { - int tmp_dest = dest; - int rex1 = REX_W, rex2 = REX_W; - /* must be not */ - if (dest >= ESP) { - tmp_dest = EAX; - } - if (src > RDI) rex1 |= REX_B; - BYTE_OUT3R(s, rex1, 0x83, ModRM(0x3, 0x7, src), 0); /* cmp */ - x86_64_seti(s, tmp_dest, 0); - if (src > RDI) rex2 |= REX_R; - if (tmp_dest > RDI) rex2 |= REX_B; - BYTE_OUT3R(s, rex2, 0x0f, 0x94, ModRM(0x3, src, tmp_dest)); /* sete dest */ - if (tmp_dest != dest) { - x86_64_movi(s, dest, tmp_dest); - } + int tmp_dest = dest; + int rex1 = REX_W, rex2 = REX_W; + /* must be not */ + if (dest >= ESP) { + tmp_dest = EAX; + } + if (src > RDI) + rex1 |= REX_B; + BYTE_OUT3R(s, rex1, 0x83, ModRM(0x3, 0x7, src), 0); /* cmp */ + x86_64_seti(s, tmp_dest, 0); + if (src > RDI) + rex2 |= REX_R; + if (tmp_dest > RDI) + rex2 |= REX_B; + BYTE_OUT3R(s, rex2, 0x0f, 0x94, + ModRM(0x3, src, tmp_dest)); /* sete dest */ + if (tmp_dest != dest) { + x86_64_movi(s, dest, tmp_dest); + } } else { - int rex = REX_W; - if (src != dest) { - int rex1 = rex; - if (dest > RDI) rex1 |= REX_B; - if (src > RDI) rex1 |= REX_R; - BYTE_OUT2R(s, rex1, MOV32, ModRM(0x3, src, dest)); - } - if (dest > RDI) rex |= REX_B; - BYTE_OUT2R(s, rex, op, ModRM(0x3, subop, dest)); + int rex = REX_W; + if (src != dest) { + int rex1 = rex; + if (dest > RDI) + rex1 |= REX_B; + if (src > RDI) + rex1 |= REX_R; + BYTE_OUT2R(s, rex1, MOV32, ModRM(0x3, src, dest)); + } + if (dest > RDI) + rex |= REX_B; + BYTE_OUT2R(s, rex, op, ModRM(0x3, subop, dest)); } } -extern void x86_64_bswap(s, junk, typ, dest, src) -dill_stream s; -int junk; -int typ; -int dest; -int src; +extern void +x86_64_bswap(dill_stream s, int junk, int typ, int dest, int src) { int rex = 0; - switch(typ) { - case DILL_F: - rex = 0; - if (dest > RDI) rex |= REX_R; - BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x7e, ModRM(0x3, src, EAX)); - x86_64_bswap(s, 0, DILL_I, EAX, EAX); - BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, dest, EAX)); - break; + switch (typ) { + case DILL_F: + rex = 0; + if (dest > RDI) + rex |= REX_R; + BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x7e, ModRM(0x3, src, EAX)); + x86_64_bswap(s, 0, DILL_I, EAX, EAX); + BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, dest, EAX)); + break; case DILL_D: - rex = REX_W; - if (dest > RDI) rex |= REX_R; - BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x7e, ModRM(0x3, src, EAX)); - x86_64_bswap(s, 0, DILL_L, EAX, EAX); - BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, dest, EAX)); - break; - case DILL_L: case DILL_UL: case DILL_P: - rex |= REX_W; - case DILL_I: case DILL_U: - if (dest > RDI) rex |= REX_B; - if (dest != src) { - x86_64_movl(s, dest, src); - } - BYTE_OUT2R(s, rex, 0x0f, 0xc8 + (dest&0x7)); /* byteswap dest */ - break; - case DILL_S: case DILL_US: - if (dest > RDI) rex |= REX_B; - if (dest != src) { - x86_64_movl(s, dest, src); - } - /* byteswap 32 bits and shift down 16 */ - BYTE_OUT2R(s, rex, 0x0f, 0xc8 + (dest&0x7)); /* byteswap dest */ - x86_64_rshi(s, dest, dest, 16); - break; - case DILL_C: case DILL_UC: - break; - } -} - -extern void x86_64_mul(s, sign, imm, dest, src1, src2) -dill_stream s; -int sign; -int imm; -int dest; -int src1; -IMM_TYPE src2; -{ + rex = REX_W; + if (dest > RDI) + rex |= REX_R; + BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x7e, ModRM(0x3, src, EAX)); + x86_64_bswap(s, 0, DILL_L, EAX, EAX); + BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, dest, EAX)); + break; + case DILL_L: + case DILL_UL: + case DILL_P: + rex |= REX_W; + case DILL_I: + case DILL_U: + if (dest > RDI) + rex |= REX_B; + if (dest != src) { + x86_64_movl(s, dest, src); + } + BYTE_OUT2R(s, rex, 0x0f, 0xc8 + (dest & 0x7)); /* byteswap dest */ + break; + case DILL_S: + case DILL_US: + if (dest > RDI) + rex |= REX_B; + if (dest != src) { + x86_64_movl(s, dest, src); + } + /* byteswap 32 bits and shift down 16 */ + BYTE_OUT2R(s, rex, 0x0f, 0xc8 + (dest & 0x7)); /* byteswap dest */ + x86_64_rshi(s, dest, dest, 16); + break; + case DILL_C: + case DILL_UC: + break; + } +} + +extern void +x86_64_mul(dill_stream s, + int sign, + int imm, + int dest, + int src1, + IMM_TYPE imm_src2) +{ + int src2 = (int)imm_src2; int rex = REX_W; /* make src1 be EAX */ if (dest != EAX) { - x86_64_push_reg(s, EAX); + x86_64_push_reg(s, EAX); } if (dest != EDX) { - x86_64_push_reg(s, EDX); + x86_64_push_reg(s, EDX); } - - if ((src2 == EAX) && !imm){ - int tmp = src2; - src1 = src2; - src2 = tmp; + + if ((src2 == EAX) && !imm) { + int tmp = src2; + src1 = src2; + src2 = tmp; } if (src1 != EAX) { - x86_64_movl(s, EAX, src1); + x86_64_movl(s, EAX, src1); } if (imm == 0) { - if (src2 > RDI) rex |= REX_B; - BYTE_OUT2R(s, rex, 0xf7, ModRM(0x3, sign ? 0x5 : 0x4, src2)); + if (src2 > RDI) + rex |= REX_B; + BYTE_OUT2R(s, rex, 0xf7, ModRM(0x3, sign ? 0x5 : 0x4, src2)); } else { - /* src2 is really immediate */ - if (sign && ((src2 & 0xffffffff80000000) == 0)) { - BYTE_OUT2IR(s, rex, 0x69, ModRM(0x3, 0, EAX), src2); - } else { - x86_64_setl(s, EDX, src2); - BYTE_OUT2R(s, rex, 0xf7, ModRM(0x3, 0x4, EDX)); - } + /* src2 is really immediate */ + if (sign && ((imm_src2 & 0xffffffff80000000) == 0)) { + BYTE_OUT2IR(s, rex, 0x69, ModRM(0x3, 0, EAX), (int)imm_src2); + } else { + x86_64_setl(s, EDX, imm_src2); + BYTE_OUT2R(s, rex, 0xf7, ModRM(0x3, 0x4, EDX)); + } } if (dest != EDX) { - x86_64_pop_reg(s, EDX); + x86_64_pop_reg(s, EDX); } if (dest != EAX) { - x86_64_movl(s, dest, EAX); - x86_64_pop_reg(s, EAX); + x86_64_movl(s, dest, EAX); + x86_64_pop_reg(s, EAX); } } -extern void x86_64_div_modi(s, div, type, dest, src1, imm) -dill_stream s; -int div; -int type; -int dest; -int src1; -IMM_TYPE imm; +extern void +x86_64_div_modi(dill_stream s, + int div, + int type, + int dest, + int src1, + IMM_TYPE imm) { x86_64_push_reg(s, EBP); x86_64_setl(s, EBP, imm); @@ -1647,332 +1879,334 @@ IMM_TYPE imm; x86_64_pop_reg(s, EBP); } -extern void x86_64_div_mod(s, div, type, dest, src1, src2) -dill_stream s; -int div; -int type; -int dest; -int src1; -int src2; +extern void +x86_64_div_mod(dill_stream s, int div, int type, int dest, int src1, int src2) { int tmp_src2 = src2; int rex = 0; int sign = ((type == DILL_I) || (type == DILL_L)); - + if ((type == DILL_UL) || (type == DILL_L)) { - rex = REX_W; + rex = REX_W; } - /* Well, this is awkward. divi must use EDX and EAX for src1, destroying both */ + /* Well, this is awkward. divi must use EDX and EAX for src1, destroying + * both */ /* save eax and edx, (unless one is the dest) */ if (dest != EAX) { - x86_64_push_reg(s, EAX); + x86_64_push_reg(s, EAX); } if (dest != EDX) { - x86_64_push_reg(s, EDX); + x86_64_push_reg(s, EDX); } if ((src2 == EAX) || (src2 == EDX)) { - /* we'll move src2 to EBP */ - tmp_src2 = EBP; - x86_64_push_reg(s, EBP); - x86_64_movl(s, EBP, src2); + /* we'll move src2 to EBP */ + tmp_src2 = EBP; + x86_64_push_reg(s, EBP); + x86_64_movl(s, EBP, src2); } if (src1 != EAX) { - x86_64_movl(s, EAX, src1); + x86_64_movl(s, EAX, src1); } if (type == DILL_I) { - BYTE_OUT1(s, 0x99); /* cltd (altern cdq) */ -/* rex |= REX_W;*/ + BYTE_OUT1(s, 0x99); /* cltd (altern cdq) */ + /* rex |= REX_W;*/ } else if (sign) { - x86_64_rshai(s, EDX, EAX, 63); -/* x86_64_movl(s, EDX, EAX);*/ + x86_64_rshai(s, EDX, EAX, 63); + /* x86_64_movl(s, EDX, EAX);*/ } else { - x86_64_clear(s, EDX); + x86_64_clear(s, EDX); } - if (tmp_src2 > RDI) rex |= REX_B; + if (tmp_src2 > RDI) + rex |= REX_B; BYTE_OUT2R(s, rex, 0xf7, ModRM(0x3, sign ? 0x7 : 0x6, tmp_src2)); if ((src2 == EDX) || (src2 == EAX)) { - x86_64_pop_reg(s, EBP); + x86_64_pop_reg(s, EBP); } if (div && (dest != EAX)) { - x86_64_movl(s, dest, EAX); + x86_64_movl(s, dest, EAX); } if (!div && (dest != EDX)) { - x86_64_movl(s, dest, EDX); + x86_64_movl(s, dest, EDX); } if (dest != EDX) { - x86_64_pop_reg(s, EDX); + x86_64_pop_reg(s, EDX); } if (dest != EAX) { - x86_64_pop_reg(s, EAX); + x86_64_pop_reg(s, EAX); } - } static int group1_eax_op[] = { - 0x05 /* add */, - 0x0d /* or */, - 0x15 /* adc */, - 0x1d /* sbb */, - 0x25 /* and */, - 0x2d /* sub */, - 0x35 /* xor */, - 0x3d /* cmp */ + 0x05 /* add */, 0x0d /* or */, 0x15 /* adc */, 0x1d /* sbb */, + 0x25 /* and */, 0x2d /* sub */, 0x35 /* xor */, 0x3d /* cmp */ }; -extern void x86_64_arith3i(s, op, typ, dest, src, imm) -dill_stream s; -int op; -int typ; -int dest; -int src; -IMM_TYPE imm; +extern void +x86_64_arith3i(dill_stream s, int op, int typ, int dest, int src, IMM_TYPE imm) { int rex = 0; if ((typ == DILL_L) || (typ == DILL_UL) || (typ == DILL_P)) { - rex = REX_W; + rex = REX_W; } if (dest != src) { - int rex1 = rex; - if (dest > RDI) rex1 |= REX_B; - if (src > RDI) rex1 |= REX_R; - BYTE_OUT2R(s, rex1, MOV32, ModRM(0x3, src, dest)); + int rex1 = rex; + if (dest > RDI) + rex1 |= REX_B; + if (src > RDI) + rex1 |= REX_R; + BYTE_OUT2R(s, rex1, MOV32, ModRM(0x3, src, dest)); } if ((imm <= 127) && (imm > -128)) { - int rex1 = rex; - if (dest > RDI) rex1 |= REX_B; - BYTE_OUT3R(s, rex1, 0x83, ModRM(0x3, op, dest), imm & 0xff); - return; + int rex1 = rex; + if (dest > RDI) + rex1 |= REX_B; + BYTE_OUT3R(s, rex1, 0x83, ModRM(0x3, op, dest), imm & 0xff); + return; } if ((0xffffffff80000000 & imm) == 0) { - /* int-sized immediate */ - if (dest == EAX) { - BYTE_OUT1IR(s, rex, group1_eax_op[op], imm); - } else { - int rex2 = rex; - if (dest > RDI) rex2 |= REX_B; - BYTE_OUT2IR(s, rex2, 0x81, ModRM(0x3, op, dest), imm); - } + /* int-sized immediate */ + if (dest == EAX) { + BYTE_OUT1IR(s, rex, group1_eax_op[op], (int)imm); + } else { + int rex2 = rex; + if (dest > RDI) + rex2 |= REX_B; + BYTE_OUT2IR(s, rex2, 0x81, ModRM(0x3, op, dest), (int)imm); + } } else { - int tmp_reg = dest; - if (src == dest) { - if (src == EAX) { - tmp_reg = R11; - } else { - tmp_reg = EAX; - } - x86_64_push_reg(s, tmp_reg); - } - x86_64_pset(s, typ, 0, tmp_reg, imm); - switch(op) { - case 0: /* add */ op = 0x03; /* reg to reg */ break; - case 5: /* sub */ op = 0x2b; /* reg to reg */ break; - case 4: /* and */ op = 0x23; /* reg to reg */ break; - case 1: /* or */ op = 0x0b; /* reg to reg */ break; - case 6: /* xor */ op = 0x33; /* reg to reg */ break; - } - x86_64_arith3(s, op, typ, dest, src, tmp_reg); - if (src == dest) { - x86_64_pop_reg(s, tmp_reg); - } - } -} - -extern void x86_64_shift(s, op, type, dest, src1, src2) -dill_stream s; -int op; -int type; -int dest; -int src1; -int src2; + int tmp_reg = dest; + if (src == dest) { + if (src == EAX) { + tmp_reg = R11; + } else { + tmp_reg = EAX; + } + x86_64_push_reg(s, tmp_reg); + } + x86_64_pset(s, typ, 0, tmp_reg, imm); + switch (op) { + case 0: /* add */ + op = 0x03; /* reg to reg */ + break; + case 5: /* sub */ + op = 0x2b; /* reg to reg */ + break; + case 4: /* and */ + op = 0x23; /* reg to reg */ + break; + case 1: /* or */ + op = 0x0b; /* reg to reg */ + break; + case 6: /* xor */ + op = 0x33; /* reg to reg */ + break; + } + x86_64_arith3(s, op, typ, dest, src, tmp_reg); + if (src == dest) { + x86_64_pop_reg(s, tmp_reg); + } + } +} + +extern void +x86_64_shift(dill_stream s, int op, int type, int dest, int src1, int src2) { int tmp_dest = dest; int rex = 0; if ((type == DILL_L) || (type == DILL_UL) || (type == DILL_P)) { - rex = REX_W; + rex = REX_W; } if ((dest == ECX) || (dest == src2)) { - x86_64_push_reg(s, EAX); - tmp_dest = EAX; + x86_64_push_reg(s, EAX); + tmp_dest = EAX; } if (tmp_dest != src1) { - x86_64_movl(s, tmp_dest, src1); + x86_64_movl(s, tmp_dest, src1); } if (src2 != ECX) { - x86_64_push_reg(s, ECX); - x86_64_movl(s, ECX, src2); + x86_64_push_reg(s, ECX); + x86_64_movl(s, ECX, src2); } - if (tmp_dest > RDI) rex |= REX_B; + if (tmp_dest > RDI) + rex |= REX_B; BYTE_OUT2R(s, rex, 0xd3, ModRM(0x3, op, tmp_dest)); if (src2 != ECX) { - x86_64_pop_reg(s, ECX); + x86_64_pop_reg(s, ECX); } if ((dest == ECX) || (dest == src2)) { - x86_64_movl(s, dest, tmp_dest); - x86_64_pop_reg(s, EAX); + x86_64_movl(s, dest, tmp_dest); + x86_64_pop_reg(s, EAX); } } -extern void x86_64_shifti(s, op, type, dest, src, imm) -dill_stream s; -int op; -int type; -int dest; -int src; -IMM_TYPE imm; +extern void +x86_64_shifti(dill_stream s, int op, int type, int dest, int src, IMM_TYPE imm) { int rex = 0; if ((type == DILL_L) || (type == DILL_UL) || (type == DILL_P)) { - rex = REX_W; + rex = REX_W; } if (dest != src) { - x86_64_movl(s, dest, src); + x86_64_movl(s, dest, src); } - if (dest > RDI) rex |= REX_B; + if (dest > RDI) + rex |= REX_B; BYTE_OUT3R(s, rex, 0xc1, ModRM(0x3, op, dest), imm & 0xff); } -#define CONV(x,y) ((x*100)+y) +#define CONV(x, y) ((x * 100) + y) extern void -x86_64_convert(dill_stream s, int from_type, int to_type, - int dest, int src) +x86_64_convert(dill_stream s, int from_type, int to_type, int dest, int src) { - switch(CONV(from_type, to_type)) { + switch (CONV(from_type, to_type)) { case CONV(DILL_I, DILL_L): - case CONV(DILL_L,DILL_I): - case CONV(DILL_I,DILL_UL): - /* signext24 - lsh32, rsha32 */ - x86_64_lshi(s, dest, src, 32); - x86_64_rshai(s, dest, dest, 32); - break; - case CONV(DILL_U,DILL_I): - case CONV(DILL_U,DILL_UL): - case CONV(DILL_U,DILL_L): + case CONV(DILL_L, DILL_I): + case CONV(DILL_I, DILL_UL): + /* signext24 - lsh32, rsha32 */ + x86_64_lshi(s, dest, src, 32); + x86_64_rshai(s, dest, dest, 32); + break; + case CONV(DILL_U, DILL_I): + case CONV(DILL_U, DILL_UL): + case CONV(DILL_U, DILL_L): case CONV(DILL_I, DILL_U): - case CONV(DILL_UL,DILL_U): - case CONV(DILL_L,DILL_U): - /* clear upper 32 - lsh32, rsh32 */ - x86_64_lshi(s, dest, src, 32); - x86_64_rshi(s, dest, dest, 32); - break; - case CONV(DILL_UL,DILL_I): - case CONV(DILL_UL,DILL_L): - case CONV(DILL_L,DILL_UL): - case CONV(DILL_P,DILL_UL): - case CONV(DILL_UL,DILL_P): - if(src == dest) return; - x86_64_movl(s, dest,src); - break; - case CONV(DILL_D,DILL_F): - case CONV(DILL_F,DILL_D): - /* cvtss2sd */ - /* cvtsd2ss */ - { - int rex = 0; - /* cvts{d,s}2s{s,d} */ - if (src > RDI) rex |= REX_B; - if (dest > RDI) rex |= REX_R; - BYTE_OUT1R3(s, (from_type == DILL_D) ? 0xf2 : 0xf3, rex, 0xf, 0x5a, ModRM(0x3, dest, src)); - break; - } - case CONV(DILL_F,DILL_U): - case CONV(DILL_F,DILL_UL): - case CONV(DILL_F,DILL_US): - case CONV(DILL_F,DILL_UC): - case CONV(DILL_D,DILL_U): - case CONV(DILL_D,DILL_UL): - case CONV(DILL_D,DILL_US): - case CONV(DILL_D,DILL_UC): - { - int return_reg; - if (from_type == DILL_F) { - x86_64_convert(s, DILL_F, DILL_D, XMM0, src); - src = XMM0; - } - return_reg = dill_scallul(s, (void*)dill_x86_64_hidden_DtoUL, "dill_x86_64_hidden_DtoUL", "%d", src); - if (to_type == DILL_U) { - x86_64_lshi(s, dest, return_reg, 32); - x86_64_rshi(s, dest, dest, 32); - } else { - x86_64_pmov(s, to_type, dest, return_reg); - } - break; - } - case CONV(DILL_F,DILL_I): - case CONV(DILL_F,DILL_L): - case CONV(DILL_F,DILL_S): - case CONV(DILL_F,DILL_C): - case CONV(DILL_D,DILL_I): - case CONV(DILL_D,DILL_L): - case CONV(DILL_D,DILL_S): - case CONV(DILL_D,DILL_C): - { - int rex = 0; - /* cvttsd2si */ - if (to_type == DILL_L) rex = REX_W; - if (src > RDI) rex |= REX_B; - if (dest > RDI) rex |= REX_R; - BYTE_OUT1R3(s, (from_type == DILL_D) ? 0xf2 : 0xf3, rex, 0xf, 0x2c, ModRM(0x3, dest, src)); - break; - } - case CONV(DILL_I,DILL_D): - case CONV(DILL_I,DILL_F): - case CONV(DILL_S,DILL_D): - case CONV(DILL_S,DILL_F): - case CONV(DILL_C,DILL_D): - case CONV(DILL_C,DILL_F): - { - int rex = 0; - /* cvtsi2s{s,d} */ - if (src > RDI) rex |= REX_B; - if (dest > RDI) rex |= REX_R; - BYTE_OUT1R3(s, (to_type == DILL_D) ? 0xf2 : 0xf3, rex, 0xf, 0x2a, ModRM(0x3, dest, src)); - break; - } - case CONV(DILL_L,DILL_F): - case CONV(DILL_L,DILL_D): - case CONV(DILL_U,DILL_D): - case CONV(DILL_U,DILL_F): - case CONV(DILL_US,DILL_D): - case CONV(DILL_US,DILL_F): - case CONV(DILL_UC,DILL_D): - case CONV(DILL_UC,DILL_F): - { - int rex = REX_W; - /* cvtsi2s{s,d} */ - if (src > RDI) rex |= REX_B; - if (dest > RDI) rex |= REX_R; - BYTE_OUT1R3(s, (to_type == DILL_D) ? 0xf2 : 0xf3, rex, 0xf, 0x2a, ModRM(0x3, dest, src)); - break; - } - case CONV(DILL_UL,DILL_D): - case CONV(DILL_UL,DILL_F): - { - int return_reg = dill_scalld(s, (void*)dill_x86_64_hidden_ULtoD, "dill_x86_64_hidden_ULtoD", "%l", src); - if (to_type == DILL_F) { - BYTE_OUT1R3(s, 0xf2, 0, 0xf, 0x5a, ModRM(0x3, return_reg, return_reg)); - } - x86_64_pmov(s, to_type, dest, return_reg); - break; - } - case CONV(DILL_C,DILL_I): - case CONV(DILL_C,DILL_L): - case CONV(DILL_C,DILL_U): - case CONV(DILL_C,DILL_UL): - case CONV(DILL_C,DILL_S): - case CONV(DILL_S,DILL_C): - case CONV(DILL_US,DILL_C): - /* signext56 - lsh56, rsha56 */ - x86_64_lshi(s, dest, src, 56); - x86_64_rshai(s, dest, dest, 56); - break; + case CONV(DILL_UL, DILL_U): + case CONV(DILL_L, DILL_U): + /* clear upper 32 - lsh32, rsh32 */ + x86_64_lshi(s, dest, src, 32); + x86_64_rshi(s, dest, dest, 32); + break; + case CONV(DILL_UL, DILL_I): + case CONV(DILL_UL, DILL_L): + case CONV(DILL_L, DILL_UL): + case CONV(DILL_P, DILL_UL): + case CONV(DILL_UL, DILL_P): + if (src == dest) + return; + x86_64_movl(s, dest, src); + break; + case CONV(DILL_D, DILL_F): + case CONV(DILL_F, DILL_D): + /* cvtss2sd */ + /* cvtsd2ss */ + { + int rex = 0; + /* cvts{d,s}2s{s,d} */ + if (src > RDI) + rex |= REX_B; + if (dest > RDI) + rex |= REX_R; + BYTE_OUT1R3(s, (from_type == DILL_D) ? 0xf2 : 0xf3, rex, 0xf, 0x5a, + ModRM(0x3, dest, src)); + break; + } + case CONV(DILL_F, DILL_U): + case CONV(DILL_F, DILL_UL): + case CONV(DILL_F, DILL_US): + case CONV(DILL_F, DILL_UC): + case CONV(DILL_D, DILL_U): + case CONV(DILL_D, DILL_UL): + case CONV(DILL_D, DILL_US): + case CONV(DILL_D, DILL_UC): { + int return_reg; + if (from_type == DILL_F) { + x86_64_convert(s, DILL_F, DILL_D, XMM0, src); + src = XMM0; + } + return_reg = dill_scallul(s, (void*)dill_x86_64_hidden_DtoUL, + "dill_x86_64_hidden_DtoUL", "%d", src); + if (to_type == DILL_U) { + x86_64_lshi(s, dest, return_reg, 32); + x86_64_rshi(s, dest, dest, 32); + } else { + x86_64_pmov(s, to_type, dest, return_reg); + } + break; + } + case CONV(DILL_F, DILL_I): + case CONV(DILL_F, DILL_L): + case CONV(DILL_F, DILL_S): + case CONV(DILL_F, DILL_C): + case CONV(DILL_D, DILL_I): + case CONV(DILL_D, DILL_L): + case CONV(DILL_D, DILL_S): + case CONV(DILL_D, DILL_C): { + int rex = 0; + /* cvttsd2si */ + if (to_type == DILL_L) + rex = REX_W; + if (src > RDI) + rex |= REX_B; + if (dest > RDI) + rex |= REX_R; + BYTE_OUT1R3(s, (from_type == DILL_D) ? 0xf2 : 0xf3, rex, 0xf, 0x2c, + ModRM(0x3, dest, src)); + break; + } + case CONV(DILL_I, DILL_D): + case CONV(DILL_I, DILL_F): + case CONV(DILL_S, DILL_D): + case CONV(DILL_S, DILL_F): + case CONV(DILL_C, DILL_D): + case CONV(DILL_C, DILL_F): { + int rex = 0; + /* cvtsi2s{s,d} */ + if (src > RDI) + rex |= REX_B; + if (dest > RDI) + rex |= REX_R; + BYTE_OUT1R3(s, (to_type == DILL_D) ? 0xf2 : 0xf3, rex, 0xf, 0x2a, + ModRM(0x3, dest, src)); + break; + } + case CONV(DILL_L, DILL_F): + case CONV(DILL_L, DILL_D): + case CONV(DILL_U, DILL_D): + case CONV(DILL_U, DILL_F): + case CONV(DILL_US, DILL_D): + case CONV(DILL_US, DILL_F): + case CONV(DILL_UC, DILL_D): + case CONV(DILL_UC, DILL_F): { + int rex = REX_W; + /* cvtsi2s{s,d} */ + if (src > RDI) + rex |= REX_B; + if (dest > RDI) + rex |= REX_R; + BYTE_OUT1R3(s, (to_type == DILL_D) ? 0xf2 : 0xf3, rex, 0xf, 0x2a, + ModRM(0x3, dest, src)); + break; + } + case CONV(DILL_UL, DILL_D): + case CONV(DILL_UL, DILL_F): { + int return_reg = dill_scalld(s, (void*)dill_x86_64_hidden_ULtoD, + "dill_x86_64_hidden_ULtoD", "%l", src); + if (to_type == DILL_F) { + BYTE_OUT1R3(s, 0xf2, 0, 0xf, 0x5a, + ModRM(0x3, return_reg, return_reg)); + } + x86_64_pmov(s, to_type, dest, return_reg); + break; + } + case CONV(DILL_C, DILL_I): + case CONV(DILL_C, DILL_L): + case CONV(DILL_C, DILL_U): + case CONV(DILL_C, DILL_UL): + case CONV(DILL_C, DILL_S): + case CONV(DILL_S, DILL_C): + case CONV(DILL_US, DILL_C): + /* signext56 - lsh56, rsha56 */ + x86_64_lshi(s, dest, src, 56); + x86_64_rshai(s, dest, dest, 56); + break; case CONV(DILL_C, DILL_US): - /* signext56 - lsh56, rsha56 */ - x86_64_lshi(s, dest, src, 56); - x86_64_rshai(s, dest, dest, 56); - x86_64_andi(s, dest, dest, 0xffff); - break; + /* signext56 - lsh56, rsha56 */ + x86_64_lshi(s, dest, src, 56); + x86_64_rshai(s, dest, dest, 56); + x86_64_andi(s, dest, dest, 0xffff); + break; case CONV(DILL_I, DILL_C): case CONV(DILL_U, DILL_C): case CONV(DILL_L, DILL_C): @@ -1984,22 +2218,22 @@ x86_64_convert(dill_stream s, int from_type, int to_type, case CONV(DILL_L, DILL_UC): case CONV(DILL_UL, DILL_UC): case CONV(DILL_US, DILL_UC): - x86_64_andi(s, dest, src, 0xff); - break; - case CONV(DILL_S,DILL_I): - case CONV(DILL_S,DILL_L): - case CONV(DILL_S,DILL_U): - case CONV(DILL_S,DILL_UL): - case CONV(DILL_S,DILL_US): - case CONV(DILL_US,DILL_S): - /* signext48 - lsh48, rsha48 */ - x86_64_lshi(s, dest, src, 48); - x86_64_rshai(s, dest, dest, 48); - break; - case CONV(DILL_US,DILL_I): - case CONV(DILL_US,DILL_L): - case CONV(DILL_US,DILL_U): - case CONV(DILL_US,DILL_UL): + x86_64_andi(s, dest, src, 0xff); + break; + case CONV(DILL_S, DILL_I): + case CONV(DILL_S, DILL_L): + case CONV(DILL_S, DILL_U): + case CONV(DILL_S, DILL_UL): + case CONV(DILL_S, DILL_US): + case CONV(DILL_US, DILL_S): + /* signext48 - lsh48, rsha48 */ + x86_64_lshi(s, dest, src, 48); + x86_64_rshai(s, dest, dest, 48); + break; + case CONV(DILL_US, DILL_I): + case CONV(DILL_US, DILL_L): + case CONV(DILL_US, DILL_U): + case CONV(DILL_US, DILL_UL): case CONV(DILL_I, DILL_S): case CONV(DILL_U, DILL_S): case CONV(DILL_L, DILL_S): @@ -2008,337 +2242,416 @@ x86_64_convert(dill_stream s, int from_type, int to_type, case CONV(DILL_U, DILL_US): case CONV(DILL_L, DILL_US): case CONV(DILL_UL, DILL_US): - /* zero uppper 48 - lsh48, rsh48 */ - x86_64_lshi(s, dest, src, 48); - x86_64_rshi(s, dest, dest, 48); - break; + /* zero uppper 48 - lsh48, rsh48 */ + x86_64_lshi(s, dest, src, 48); + x86_64_rshi(s, dest, dest, 48); + break; default: - printf("Unknown case in x86_64 convert %d\n", CONV(from_type,to_type)); + printf("Unknown case in x86_64 convert %d\n", CONV(from_type, to_type)); } } static unsigned char op_conds[] = { - 0x84, /* dill_beq_code */ /* signed */ - 0x8d, /* dill_bge_code */ - 0x8F, /* dill_bgt_code */ - 0x8e, /* dill_ble_code */ - 0x8c, /* dill_blt_code */ - 0x85, /* dill_bne_code */ - - 0x84, /* dill_beq_code */ /* unsigned */ - 0x83, /* dill_bge_code */ - 0x87, /* dill_bgt_code */ - 0x86, /* dill_ble_code */ - 0x82, /* dill_blt_code */ - 0x85, /* dill_bne_code */ + 0x84, + /* dill_beq_code */ /* signed */ + 0x8d, /* dill_bge_code */ + 0x8F, /* dill_bgt_code */ + 0x8e, /* dill_ble_code */ + 0x8c, /* dill_blt_code */ + 0x85, /* dill_bne_code */ + + 0x84, + /* dill_beq_code */ /* unsigned */ + 0x83, /* dill_bge_code */ + 0x87, /* dill_bgt_code */ + 0x86, /* dill_ble_code */ + 0x82, /* dill_blt_code */ + 0x85, /* dill_bne_code */ }; static unsigned char fop_conds[] = { - 0x84, /* dill_beq_code */ /* z = 1*/ - 0x86, /* dill_bge_code */ /* jna */ - 0x82, /* dill_bgt_code */ - 0x83, /* dill_ble_code */ /* c = 0 */ - 0x87, /* dill_blt_code */ - 0x85, /* dill_bne_code */ + 0x84, + /* dill_beq_code */ /* z = 1*/ + 0x86, + /* dill_bge_code */ /* jna */ + 0x82, /* dill_bgt_code */ + 0x83, + /* dill_ble_code */ /* c = 0 */ + 0x87, /* dill_blt_code */ + 0x85, /* dill_bne_code */ }; extern void x86_64_branch(dill_stream s, int op, int type, int src1, int src2, int label) { int rex = 0; - if ((type == DILL_L) || (type == DILL_UL) || (type == DILL_P)) rex |= REX_W; + if ((type == DILL_L) || (type == DILL_UL) || (type == DILL_P)) + rex |= REX_W; - switch(type) { + switch (type) { case DILL_U: case DILL_UL: case DILL_US: case DILL_UC: - op += 6; /* second set of codes */ - /* fall through */ + op += 6; /* second set of codes */ + /* fall through */ default: - if (src1 > RDI) rex |= REX_B; - if (src2 > RDI) rex |= REX_R; - if (type == DILL_D) { - BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x2e, ModRM(0x3, src2, src1)); - } else if (type == DILL_F) { - BYTE_OUT3R(s, rex, 0x0f, 0x2e, ModRM(0x3, src2, src1)); - } else { - BYTE_OUT2R(s, rex, 0x39, ModRM(0x3, src2, src1)); - } - dill_mark_branch_location(s, label); - if ((type == DILL_D) || (type == DILL_F)) { - BYTE_OUT2I(s, 0x0f, fop_conds[op], 0); - } else { - BYTE_OUT2I(s, 0x0f, op_conds[op], 0); - } + if (src1 > RDI) + rex |= REX_B; + if (src2 > RDI) + rex |= REX_R; + if (type == DILL_D) { + BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x2e, ModRM(0x3, src2, src1)); + } else if (type == DILL_F) { + BYTE_OUT3R(s, rex, 0x0f, 0x2e, ModRM(0x3, src2, src1)); + } else { + BYTE_OUT2R(s, rex, 0x39, ModRM(0x3, src2, src1)); + } + dill_mark_branch_location(s, label); + if ((type == DILL_D) || (type == DILL_F)) { + BYTE_OUT2I(s, 0x0f, fop_conds[op], 0); + } else { + BYTE_OUT2I(s, 0x0f, op_conds[op], 0); + } } x86_64_nop(s); } static unsigned char set_op_conds[] = { - 0x94, /* dill_beq_code */ /* signed */ - 0x9d, /* dill_bge_code */ - 0x9F, /* dill_bgt_code */ - 0x9e, /* dill_ble_code */ - 0x9c, /* dill_blt_code */ - 0x95, /* dill_bne_code */ - - 0x94, /* dill_beq_code */ /* unsigned */ - 0x93, /* dill_bge_code */ - 0x97, /* dill_bgt_code */ - 0x96, /* dill_ble_code */ - 0x92, /* dill_blt_code */ - 0x95, /* dill_bne_code */ - - 0x94, /* dill_beq_code */ /* floating */ /* z = 1*/ - 0x96, /* dill_bge_code */ /* jna */ - 0x92, /* dill_bgt_code */ - 0x93, /* dill_ble_code */ /* c = 0 */ - 0x97, /* dill_blt_code */ - 0x95, /* dill_bne_code */ + 0x94, + /* dill_beq_code */ /* signed */ + 0x9d, /* dill_bge_code */ + 0x9F, /* dill_bgt_code */ + 0x9e, /* dill_ble_code */ + 0x9c, /* dill_blt_code */ + 0x95, /* dill_bne_code */ + + 0x94, + /* dill_beq_code */ /* unsigned */ + 0x93, /* dill_bge_code */ + 0x97, /* dill_bgt_code */ + 0x96, /* dill_ble_code */ + 0x92, /* dill_blt_code */ + 0x95, /* dill_bne_code */ + + 0x94, + /* dill_beq_code */ /* floating */ /* z = 1*/ + 0x96, + /* dill_bge_code */ /* jna */ + 0x92, /* dill_bgt_code */ + 0x93, + /* dill_ble_code */ /* c = 0 */ + 0x97, /* dill_blt_code */ + 0x95, /* dill_bne_code */ }; extern void x86_64_compare(dill_stream s, int op, int type, int dest, int src1, int src2) { int rex = 0; - if ((type == DILL_L) || (type == DILL_UL) || (type == DILL_P)) rex |= REX_W; + if ((type == DILL_L) || (type == DILL_UL) || (type == DILL_P)) + rex |= REX_W; - switch(type) { + switch (type) { case DILL_UC: case DILL_US: case DILL_U: case DILL_UL: - op += 6; /* second set of codes */ - /* fall through */ - break; + op += 6; /* second set of codes */ + /* fall through */ + break; case DILL_F: case DILL_D: - op += 12; /* third set of codes */ + op += 12; /* third set of codes */ } - if (src1 > RDI) rex |= REX_B; - if (src2 > RDI) rex |= REX_R; + if (src1 > RDI) + rex |= REX_B; + if (src2 > RDI) + rex |= REX_R; if (type == DILL_D) { - BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x2e, ModRM(0x3, src2, src1)); + BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x2e, ModRM(0x3, src2, src1)); } else if (type == DILL_F) { - BYTE_OUT3R(s, rex, 0x0f, 0x2e, ModRM(0x3, src2, src1)); + BYTE_OUT3R(s, rex, 0x0f, 0x2e, ModRM(0x3, src2, src1)); } else { - BYTE_OUT2R(s, rex, 0x39, ModRM(0x3, src2, src1)); /* compare */ + BYTE_OUT2R(s, rex, 0x39, ModRM(0x3, src2, src1)); /* compare */ } - BYTE_OUT3(s, 0x0f, set_op_conds[op],ModRM(0x3, EAX,EAX)); /* sete */ + BYTE_OUT3(s, 0x0f, set_op_conds[op], ModRM(0x3, EAX, EAX)); /* sete */ rex = 0; - if (dest > RDI) rex = REX_R; - BYTE_OUT3R(s, rex, 0x0f, 0xb6, ModRM(0x3, dest, EAX)); /* movzbl */ + if (dest > RDI) + rex = REX_R; + BYTE_OUT3R(s, rex, 0x0f, 0xb6, ModRM(0x3, dest, EAX)); /* movzbl */ } extern void -x86_64_comparei(dill_stream s, int op, int type, int dest, int src, IMM_TYPE imm) +x86_64_comparei(dill_stream s, + int op, + int type, + int dest, + int src, + IMM_TYPE imm) { int rex = 0; - if ((type == DILL_L) || (type == DILL_UL) || (type == DILL_P)) rex |= REX_W; + if ((type == DILL_L) || (type == DILL_UL) || (type == DILL_P)) + rex |= REX_W; - switch(type) { + switch (type) { case DILL_F: case DILL_D: - fprintf(stderr, "Shouldn't happen\n"); - break; + fprintf(stderr, "Shouldn't happen\n"); + break; case DILL_UC: case DILL_US: case DILL_U: case DILL_UL: - op += 6; /* second set of codes */ - /* fall through */ + op += 6; /* second set of codes */ + /* fall through */ } - if (src > RDI) rex |= REX_B; + if (src > RDI) + rex |= REX_B; if (imm < 0xffffffff) { - BYTE_OUT2IR(s, rex, 0x81, ModRM(0x3, 0x7, src), imm); /* cmp */ + BYTE_OUT2IR(s, rex, 0x81, ModRM(0x3, 0x7, src), (int)imm); /* cmp */ } else { - x86_64_setl(s, EAX, imm); - BYTE_OUT2R(s, rex, 0x39, ModRM(0x3, EAX, src)); + x86_64_setl(s, EAX, imm); + BYTE_OUT2R(s, rex, 0x39, ModRM(0x3, EAX, src)); } - BYTE_OUT3(s, 0x0f, set_op_conds[op],ModRM(0x3, EAX,EAX)); /* sete */ - BYTE_OUT3(s, 0x0f, 0xb6, ModRM(0x3, dest, EAX)); /* movzbl */ + BYTE_OUT3(s, 0x0f, set_op_conds[op], ModRM(0x3, EAX, EAX)); /* sete */ + BYTE_OUT3(s, 0x0f, 0xb6, ModRM(0x3, dest, EAX)); /* movzbl */ rex = 0; - if (dest > RDI) rex = REX_R; - BYTE_OUT3R(s, rex, 0x0f, 0xb6, ModRM(0x3, dest, EAX)); /* movzbl */ + if (dest > RDI) + rex = REX_R; + BYTE_OUT3R(s, rex, 0x0f, 0xb6, ModRM(0x3, dest, EAX)); /* movzbl */ } -extern void +extern void x86_64_jump_to_label(dill_stream s, unsigned long label) { dill_mark_branch_location(s, label); BYTE_OUT1I(s, 0xe9, 0); } -extern void x86_64_jump_to_reg(dill_stream s, unsigned long reg) +extern void +x86_64_jump_to_reg(dill_stream s, unsigned long reg) { int rex = 0; - if (reg > RDI) rex |= REX_B; + if (reg > RDI) + rex |= REX_B; BYTE_OUT2R(s, rex, 0xff, ModRM(0x3, 0x4, reg)); } -extern void x86_64_jump_to_imm(dill_stream s, void *imm) +extern void +x86_64_jump_to_imm(dill_stream s, void* imm) { - x86_64_seti(s, EAX, (intptr_t) imm); + x86_64_seti(s, EAX, (int)(intptr_t)imm); BYTE_OUT2(s, 0xff, ModRM(0x3, 0x4, EAX)); } -extern void +extern void x86_64_jal(dill_stream s, int return_addr_reg, int target) { -/* jump, source addr to return_addr_reg */ + /* jump, source addr to return_addr_reg */ } -extern void +extern void x86_64_special(dill_stream s, special_operations type, intptr_t param) { - x86_64_mach_info smi = (x86_64_mach_info) s->p->mach_info; + x86_64_mach_info smi = (x86_64_mach_info)s->p->mach_info; switch (type) { case DILL_NOP: - break; + break; case DILL_SEGMENTED_FOLLOWS: - switch(param) { - case DILL_X86_CS_PREFIX: - smi->pending_prefix = 0x2e; - break; - case DILL_X86_SS_PREFIX: - smi->pending_prefix = 0x36; - break; - case DILL_X86_DS_PREFIX: - smi->pending_prefix = 0x3e; - break; - case DILL_X86_ES_PREFIX: - smi->pending_prefix = 0x26; - break; - case DILL_X86_FS_PREFIX: - smi->pending_prefix = 0x64; - break; - case DILL_X86_GS_PREFIX: - smi->pending_prefix = 0x65; - break; - default: - fprintf(stderr, "Unknown x86 segment prefix!\n"); - } - break; - } -} - -static void internal_push(dill_stream s, int type, int immediate, - void *value_ptr) -{ - x86_64_mach_info smi = (x86_64_mach_info) s->p->mach_info; + switch (param) { + case DILL_X86_CS_PREFIX: + smi->pending_prefix = 0x2e; + break; + case DILL_X86_SS_PREFIX: + smi->pending_prefix = 0x36; + break; + case DILL_X86_DS_PREFIX: + smi->pending_prefix = 0x3e; + break; + case DILL_X86_ES_PREFIX: + smi->pending_prefix = 0x26; + break; + case DILL_X86_FS_PREFIX: + smi->pending_prefix = 0x64; + break; + case DILL_X86_GS_PREFIX: + smi->pending_prefix = 0x65; + break; + default: + fprintf(stderr, "Unknown x86 segment prefix!\n"); + } + break; + } +} + +static void +internal_push(dill_stream s, int type, int immediate, void* value_ptr) +{ + x86_64_mach_info smi = (x86_64_mach_info)s->p->mach_info; struct arg_info arg; arg.is_immediate = immediate; - switch(type) { - case DILL_C: case DILL_S: case DILL_I: case DILL_L: case DILL_P: case DILL_EC: - arg.type = DILL_L; - break; - case DILL_UC: case DILL_US: case DILL_U: case DILL_UL: - arg.type = DILL_UL; - break; - case DILL_D: case DILL_F: - arg.type = type; + switch (type) { + case DILL_C: + case DILL_S: + case DILL_I: + case DILL_L: + case DILL_P: + case DILL_EC: + arg.type = DILL_L; + break; + case DILL_UC: + case DILL_US: + case DILL_U: + case DILL_UL: + arg.type = DILL_UL; + break; + case DILL_D: + case DILL_F: + arg.type = type; break; default: - assert(0); + assert(0); } - - if (smi->varidiac_call && (smi->int_arg_count + smi->float_arg_count >= smi->non_var_args)) { - if (type == DILL_F) { - arg.type = DILL_D; - if (immediate) { - /* value_ptr is already pointing to a double, no special case */ - type = DILL_D; - } - } + if (smi->varidiac_call && + (smi->int_arg_count + smi->float_arg_count >= smi->non_var_args)) { + if (type == DILL_F) { + arg.type = DILL_D; + if (immediate) { + /* value_ptr is already pointing to a double, no special case */ + type = DILL_D; + } + } } if ((arg.type != DILL_D) && (arg.type != DILL_F)) { - if (smi->int_arg_count < sizeof(arg_regs) / sizeof(arg_regs[0])) { - arg.is_register = 1; - arg.in_reg = arg.out_reg = arg_regs[smi->int_arg_count]; - smi->int_arg_count++; - } else { - arg.is_register = 0; - arg.offset = smi->cur_arg_offset; - smi->cur_arg_offset += - roundup(type_info[(int)arg.type].size, smi->stack_align); - } +#ifndef USE_WINDOWS_CALLS + if (smi->int_arg_count < sizeof(arg_regs) / sizeof(arg_regs[0])) { +#else + if (smi->float_arg_count + smi->int_arg_count < + sizeof(arg_regs) / sizeof(arg_regs[0])) { +#endif + arg.is_register = 1; + arg.in_reg = arg.out_reg = arg_regs[smi->int_arg_count]; +#ifdef USE_WINDOWS_CALLS + arg.in_reg = arg.out_reg = + arg_regs[smi->int_arg_count + smi->float_arg_count]; + arg.offset = smi->cur_arg_offset; + smi->cur_arg_offset += + roundup(type_info[(int)arg.type].size, smi->stack_align); +#endif + smi->int_arg_count++; + } else { + arg.is_register = 0; + arg.offset = smi->cur_arg_offset; + smi->cur_arg_offset += + roundup(type_info[(int)arg.type].size, smi->stack_align); + } } else { - if (smi->float_arg_count < 8) { - arg.is_register = 1; - arg.in_reg = arg.out_reg = smi->float_arg_count; - smi->float_arg_count++; - } else { - arg.is_register = 0; - arg.offset = smi->cur_arg_offset; - smi->cur_arg_offset += - roundup(type_info[(int)arg.type].size, smi->stack_align); - } +#ifndef USE_WINDOWS_CALLS + if (smi->float_arg_count < 8) { +#else + if (smi->float_arg_count + smi->int_arg_count < 4) { +#endif + arg.is_register = 1; + arg.in_reg = arg.out_reg = smi->float_arg_count; +#ifdef USE_WINDOWS_CALLS + arg.in_reg = arg.out_reg = + smi->float_arg_count + smi->int_arg_count; + arg.offset = smi->cur_arg_offset; + smi->cur_arg_offset += + roundup(type_info[(int)arg.type].size, smi->stack_align); +#endif + smi->float_arg_count++; + } else { + arg.is_register = 0; + arg.offset = smi->cur_arg_offset; + smi->cur_arg_offset += + roundup(type_info[(int)arg.type].size, smi->stack_align); + } } if (arg.is_register == 0) { - if (arg.offset == 0) { - smi->call_backpatch_offset = (char*)s->p->cur_ip - (char*)s->p->code_base; - dill_subli(s, ESP, ESP, 0x70909090); /* tentative for backpatch */ - smi->call_stack_space = 128; - } - /* store it on the stack only */ - if (arg.is_immediate) { - int arg_type = arg.type; - if (type == DILL_F) { - union { - float f; - int i; - } a; - a.f = (float) *(double*)value_ptr; - x86_64_setl(s, EAX, a.i); - arg_type = DILL_I; - } else { - x86_64_setl(s, EAX, *(intptr_t*)value_ptr); - arg_type = DILL_L; - } - x86_64_pstorei(s, arg_type, 0, EAX, ESP, arg.offset); - } else { - /* need to handle DILL_F upconvert to DILL_D here? */ - x86_64_pstorei(s, arg.type, 0, *(int*)value_ptr, ESP, - arg.offset); - } + if (arg.offset == 0) { + smi->call_backpatch_offset = + (int)((char*)s->p->cur_ip - (char*)s->p->code_base); + dill_subli(s, ESP, ESP, 0x70909090); /* tentative for backpatch */ + smi->call_stack_space = 128; + } + /* store it on the stack only */ + if (arg.is_immediate) { + int arg_type = arg.type; + if (type == DILL_F) { + union { + float f; + int i; + } a; + a.f = (float)*(double*)value_ptr; + x86_64_setl(s, EAX, a.i); + arg_type = DILL_I; + } else { + x86_64_setl(s, EAX, *(intptr_t*)value_ptr); + arg_type = DILL_L; + } + x86_64_pstorei(s, arg_type, 0, EAX, ESP, arg.offset); + } else { + /* need to handle DILL_F upconvert to DILL_D here? */ + x86_64_pstorei(s, arg.type, 0, *(int*)value_ptr, ESP, + (IMM_TYPE)arg.offset); + } } else { - if ((type != DILL_F) && (type != DILL_D)) { - if (arg.is_immediate) { - x86_64_setl(s, arg.out_reg, *(intptr_t*)value_ptr); - } else { - x86_64_pmov(s, arg.type, arg.out_reg, *(int*) value_ptr); - } - } else { - /* float types handled here */ - if (arg.is_immediate) { - if ((type == DILL_F) || (type == DILL_D)) { - /* set appropriate register */ - x86_64_setf(s, type, 0, arg.out_reg, - *(double*)value_ptr); - } else { - x86_64_setl(s, arg.out_reg, *(intptr_t*)value_ptr); - } - } else { - /* move to the appropriate float reg */ - if ((type == DILL_F) && (arg.type == DILL_D)) { - /* special case for upconverting varidiac args */ - x86_64_convert(s, DILL_F, DILL_D, arg.out_reg, *(int*)value_ptr); - } else { - x86_64_mov(s, type, 0, arg.out_reg, *(int*)value_ptr); - } - } - - } - } -} - -static void push_init(dill_stream s) -{ - x86_64_mach_info smi = (x86_64_mach_info) s->p->mach_info; + if ((type != DILL_F) && (type != DILL_D)) { + if (arg.is_immediate) { + x86_64_setl(s, arg.out_reg, *(intptr_t*)value_ptr); + } else { + x86_64_pmov(s, arg.type, arg.out_reg, *(int*)value_ptr); + } + } else { + /* float types handled here */ + if (arg.is_immediate) { + if ((type == DILL_F) || (type == DILL_D)) { + /* set appropriate register */ +#ifdef USE_WINDOWS_CALLS + x86_64_setf(s, type, 0, arg.out_reg, *(double*)value_ptr); + x86_64_setl(s, arg_regs[arg.out_reg], + *(IMM_TYPE*)value_ptr); +#else + x86_64_setf(s, type, 0, arg.out_reg, *(double*)value_ptr); +#endif + } else { + x86_64_setl(s, arg.out_reg, *(intptr_t*)value_ptr); + } + } else { + /* move to the appropriate float reg */ + if ((type == DILL_F) && (arg.type == DILL_D)) { + /* special case for upconverting varidiac args */ + x86_64_convert(s, DILL_F, DILL_D, arg.out_reg, + *(int*)value_ptr); + } else { + x86_64_mov(s, type, 0, arg.out_reg, *(int*)value_ptr); + } +#ifdef USE_WINDOWS_CALLS + { + int rex = REX_W; + if (arg_regs[arg.out_reg] > RDI) + rex |= REX_B; + if (arg.out_reg > RDI) + rex |= REX_R; + // move float reg to corresponding integer + BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x7e, + ModRM(0x3, arg.out_reg, arg_regs[arg.out_reg])); + } +#endif + } + } + } +} + +static void +push_init(dill_stream s) +{ + x86_64_mach_info smi = (x86_64_mach_info)s->p->mach_info; smi->varidiac_call = 0; smi->cur_arg_offset = 0; smi->int_arg_count = 0; @@ -2347,53 +2660,77 @@ static void push_init(dill_stream s) smi->call_stack_space = 0; } -extern void x86_64_push(dill_stream s, int type, int reg) +extern void +x86_64_push(dill_stream s, int type, int reg) { - x86_64_mach_info smi = (x86_64_mach_info) s->p->mach_info; + x86_64_mach_info smi = (x86_64_mach_info)s->p->mach_info; if ((type == DILL_V) && (reg <= -1)) { - push_init(s); - if (reg <= -2) { - smi->varidiac_call = 1; - smi->non_var_args = -(reg + 2); - } + push_init(s); + if (reg <= -2) { + smi->varidiac_call = 1; + smi->non_var_args = -(reg + 2); + } } else { - internal_push(s, type, 0, ®); + internal_push(s, type, 0, ®); } } -extern void x86_64_pushi(dill_stream s, int type, IMM_TYPE value) +extern void +x86_64_pushi(dill_stream s, int type, IMM_TYPE value) { internal_push(s, type, 1, &value); } -extern void x86_64_pushpi(dill_stream s, int type, void *value) +extern void +x86_64_pushpi(dill_stream s, int type, void* value) { internal_push(s, type, 1, &value); } -extern void x86_64_pushfi(dill_stream s, int type, double value) +extern void +x86_64_pushfi(dill_stream s, int type, double value) { internal_push(s, type, 1, &value); } -extern int x86_64_calli(dill_stream s, int type, void *xfer_address, const char *name) +extern int +x86_64_calli(dill_stream s, int type, void* xfer_address, const char* name) { int rex = REX_W; + int i; int tmp_call_reg = R11; - if (tmp_call_reg > RDI) rex |= REX_B; - + if (tmp_call_reg > RDI) + rex |= REX_B; + + /* save temporary registers */ + for (i = XMM8; i < XMM15; i += 1) { + if (dill_mustsave(&s->p->tmp_f, i)) { + x86_64_save_restore_op(s, 0, DILL_D, i); + } + } + /* save temporary registers */ dill_mark_call_location(s, name, xfer_address); - BYTE_OUT1LR(s, rex, 0xb8 + (0x7 & tmp_call_reg), 0); /* setl */ - return x86_64_callr(s, type, R11); + BYTE_OUT1LR(s, rex, 0xb8 + (0x7 & tmp_call_reg), 0); /* setl */ + int ret_reg = x86_64_callr(s, type, R11); + + /* restore temporary registers */ + for (i = XMM8; i < XMM15; i += 1) { + if (dill_mustsave(&s->p->tmp_f, i)) { + x86_64_save_restore_op(s, 1, DILL_D, i); + } + } + return ret_reg; } -extern int x86_64_callr(dill_stream s, int type, int src) +extern int +x86_64_callr(dill_stream s, int type, int src) { - x86_64_mach_info smi = (x86_64_mach_info) s->p->mach_info; + x86_64_mach_info smi = (x86_64_mach_info)s->p->mach_info; int caller_side_ret_reg = EAX; int rex = REX_W; - if (src > RDI) rex |= REX_B; + if (src > RDI) + rex |= REX_B; /* save temporary registers */ /* call through reg */ @@ -2401,69 +2738,77 @@ extern int x86_64_callr(dill_stream s, int type, int src) BYTE_OUT2R(s, rex, 0xff, ModRM(0x3, 0x2, src)); /* restore temporary registers */ if ((type == DILL_D) || (type == DILL_F)) { -/* caller_side_ret_reg = _f0;*/ + /* caller_side_ret_reg = _f0;*/ } if (smi->call_stack_space != 0) { - void *save_ip = s->p->cur_ip; - int call_stack_size = roundup(smi->call_stack_space, 8) + 16; + void* save_ip = s->p->cur_ip; + int call_stack_size = roundup(smi->call_stack_space, 8) + 16; - /* backpatch space reservation */ - s->p->cur_ip = (char*)s->p->code_base + smi->call_backpatch_offset; - dill_subli(s, ESP, ESP, call_stack_size); + /* backpatch space reservation */ + s->p->cur_ip = (char*)s->p->code_base + smi->call_backpatch_offset; + dill_subli(s, ESP, ESP, call_stack_size); - s->p->cur_ip = save_ip; - /* undo arg space reservation */ - dill_addli(s, ESP, ESP, call_stack_size); + s->p->cur_ip = save_ip; + /* undo arg space reservation */ + dill_addli(s, ESP, ESP, call_stack_size); } return caller_side_ret_reg; } extern void -x86_64_branchi(dill_stream s, int op, int type, int src, IMM_TYPE imm, int label) +x86_64_branchi(dill_stream s, + int op, + int type, + int src, + IMM_TYPE imm, + int label) { int rex = 0; - if ((type == DILL_L) || (type == DILL_UL) || (type == DILL_P)) rex |= REX_W; + if ((type == DILL_L) || (type == DILL_UL) || (type == DILL_P)) + rex |= REX_W; - switch(type) { + switch (type) { case DILL_F: case DILL_D: - fprintf(stderr, "Shouldn't happen\n"); - break; + fprintf(stderr, "Shouldn't happen\n"); + break; case DILL_U: case DILL_UL: case DILL_US: case DILL_UC: -/* - switch(op) { - case dill_bge_code: { - imm = imm-1; - op = dill_bgt_code; - break; - } - case dill_blt_code: { - imm = imm-1; - op = dill_ble_code; - break; - } - } -*/ - op += 6; /* second set of codes */ - /* fall through */ + /* + switch(op) { + case dill_bge_code: { + imm = imm-1; + op = dill_bgt_code; + break; + } + case dill_blt_code: { + imm = imm-1; + op = dill_ble_code; + break; + } + } + */ + op += 6; /* second set of codes */ + /* fall through */ default: -/* BYTE_OUT2(s, 0x39, ModRM(0x3, src2, src1));*/ - if (src > RDI) rex |= REX_B; - if (imm < 0x7fffffff) { - BYTE_OUT2IR(s, rex, 0x81, ModRM(0x3, 0x7, src), imm); /* cmp */ - } else { - x86_64_setl(s, EAX, imm); - BYTE_OUT2R(s, rex, 0x39, ModRM(0x3, EAX, src)); - } - dill_mark_branch_location(s, label); - BYTE_OUT2I(s, 0x0f, op_conds[op], 0); + /* BYTE_OUT2(s, 0x39, ModRM(0x3, src2, src1));*/ + if (src > RDI) + rex |= REX_B; + if (((uintptr_t)imm) < 0x7fffffff) { + BYTE_OUT2IR(s, rex, 0x81, ModRM(0x3, 0x7, src), (int)imm); /* cmp */ + } else { + x86_64_setl(s, EAX, imm); + BYTE_OUT2R(s, rex, 0x39, ModRM(0x3, EAX, src)); + } + dill_mark_branch_location(s, label); + BYTE_OUT2I(s, 0x0f, op_conds[op], 0); } } -extern void x86_64_ret(dill_stream s, int data1, int data2, int src) +extern void +x86_64_ret(dill_stream s, int data1, int data2, int src) { switch (data1) { case DILL_C: @@ -2475,31 +2820,36 @@ extern void x86_64_ret(dill_stream s, int data1, int data2, int src) case DILL_L: case DILL_UL: case DILL_P: - if (src != EAX) x86_64_movl(s, EAX, src); - break; + if (src != EAX) + x86_64_movl(s, EAX, src); + break; case DILL_F: - if (src != XMM0) x86_64_movf(s, XMM0, src); - break; + if (src != XMM0) + x86_64_movf(s, XMM0, src); + break; case DILL_D: - if (src != XMM0) x86_64_movd(s, XMM0, src); - break; + if (src != XMM0) + x86_64_movd(s, XMM0, src); + break; } x86_64_proc_ret(s); } -extern void x86_64_retf(dill_stream s, int data1, int data2, double imm) +extern void +x86_64_retf(dill_stream s, int data1, int data2, double imm) { - switch(data1) { + switch (data1) { case DILL_F: - x86_64_setf(s, DILL_F, 0, XMM0, imm); - break; + x86_64_setf(s, DILL_F, 0, XMM0, imm); + break; case DILL_D: - x86_64_setf(s, DILL_D, 0, XMM0, imm); - break; + x86_64_setf(s, DILL_D, 0, XMM0, imm); + break; } } -extern void x86_64_reti(dill_stream s, int data1, int data2, IMM_TYPE imm) +extern void +x86_64_reti(dill_stream s, int data1, int data2, IMM_TYPE imm) { switch (data1) { case DILL_C: @@ -2508,13 +2858,13 @@ extern void x86_64_reti(dill_stream s, int data1, int data2, IMM_TYPE imm) case DILL_US: case DILL_I: case DILL_U: - x86_64_seti(s, EAX, imm); - break; + x86_64_seti(s, EAX, (int)imm); + break; case DILL_L: case DILL_UL: case DILL_P: - x86_64_setl(s, EAX, imm); - break; + x86_64_setl(s, EAX, imm); + break; } x86_64_proc_ret(s); } @@ -2522,46 +2872,46 @@ extern void x86_64_reti(dill_stream s, int data1, int data2, IMM_TYPE imm) static void x86_64_data_link(dill_stream s) { -/* struct branch_table *t = &s->p->branch_table; - int i; - for (i=0; i < t->data_mark_count; i++) { - int label = t->data_marks[i].label; - void *label_addr = t->label_locs[label] + (char*)s->p->code_base; - *t->data_marks[i].addr = label_addr; - }*/ + /* struct branch_table *t = &s->p->branch_table; + int i; + for (i=0; i < t->data_mark_count; i++) { + int label = t->data_marks[i].label; + void *label_addr = t->label_locs[label] + (char*)s->p->code_base; + *t->data_marks[i].addr = label_addr; + }*/ } static void x86_64_branch_link(dill_stream s) { - struct branch_table *t = &s->p->branch_table; + struct branch_table* t = &s->p->branch_table; int i; - for(i=0; i< t->branch_count; i++) { - int label = t->branch_locs[i].label; - int label_offset = t->label_locs[label] - t->branch_locs[i].loc; - char *branch_addr = (char*)((char *)s->p->code_base + - t->branch_locs[i].loc); - int offset; - if (*branch_addr == 0x0f) { - branch_addr +=2; /* conditional */ - offset = 6; - } else { - branch_addr++; /* unconditional */ - offset = 5; - } - int tmp = label_offset - offset; - memcpy(branch_addr, &tmp, 4); + for (i = 0; i < t->branch_count; i++) { + int label = t->branch_locs[i].label; + int label_offset = t->label_locs[label] - t->branch_locs[i].loc; + char* branch_addr = + (char*)((char*)s->p->code_base + t->branch_locs[i].loc); + int offset; + if (*branch_addr == 0x0f) { + branch_addr += 2; /* conditional */ + offset = 6; + } else { + branch_addr++; /* unconditional */ + offset = 5; + } + int tmp = label_offset - offset; + memcpy(branch_addr, &tmp, 4); } } extern void -x86_64_rt_call_link(char *code, call_t *t); +x86_64_rt_call_link(char* code, call_t* t); static void x86_64_call_link(dill_stream s) { - call_t *t = &s->p->call_table; + call_t* t = &s->p->call_table; x86_64_rt_call_link(s->p->code_base, t); } @@ -2569,11 +2919,11 @@ x86_64_call_link(dill_stream s) static void x86_64_emit_save(dill_stream s) { - x86_64_mach_info smi = (x86_64_mach_info) s->p->mach_info; - void *save_ip = s->p->cur_ip; + x86_64_mach_info smi = (x86_64_mach_info)s->p->mach_info; + void* save_ip = s->p->cur_ip; int ar_size = smi->act_rec_size; int prefix_size; - ar_size = roundup(ar_size, 16) + 8; + ar_size = roundup(ar_size, 16) + 8 + 32; s->p->cur_ip = (char*)s->p->code_base; @@ -2584,42 +2934,42 @@ x86_64_emit_save(dill_stream s) /* re-generate in the right place */ if (prefix_size != generate_prefix_code(s, 0, ar_size, NULL)) { - printf("2nd generation different than first\n"); + printf("2nd generation different than first\n"); } s->p->cur_ip = save_ip; } - + #ifdef USE_VIRTUAL_PROTECT #include -#include #include +#include #endif static void -x86_64_flush(void *base, void *limit) +x86_64_flush(void* base, void* limit) { #if defined(HOST_X86_64) { - volatile void *ptr = base; + volatile void* ptr = base; - /* flush every 8 bytes of preallocated insn stream. */ - while((char*)ptr < (char*) limit) { + /* flush every 8 bytes of preallocated insn stream. */ + while ((char*)ptr < (char*)limit) { #ifndef _MSC_VER #ifdef __x86_64__ - asm volatile ("clflush (%0)" : /* */ : "r" (ptr)); + asm volatile("clflush (%0)" : /* */ : "r"(ptr)); #endif #else - _mm_clflush((const void *) ptr); + _mm_clflush((const void*)ptr); #endif - ptr = (char *)ptr + 8; - } + ptr = (char*)ptr + 8; + } #ifndef _MSC_VER - asm volatile("nop"); - asm volatile("nop"); - asm volatile("nop"); - asm volatile("nop"); - asm volatile("nop"); + asm volatile("nop"); + asm volatile("nop"); + asm volatile("nop"); + asm volatile("nop"); + asm volatile("nop"); #endif } #endif @@ -2629,10 +2979,9 @@ x86_64_flush(void *base, void *limit) size_t size = ((intptr_t)limit - (intptr_t)base); result = VirtualProtect(base, size, PAGE_EXECUTE_READWRITE, &dummy); #endif -} +} extern void -x86_64_end(s) -dill_stream s; +x86_64_end(dill_stream s) { x86_64_proc_ret(s); x86_64_branch_link(s); @@ -2643,8 +2992,7 @@ dill_stream s; } extern void -x86_64_package_end(s) -dill_stream s; +x86_64_package_end(dill_stream s) { x86_64_proc_ret(s); x86_64_branch_link(s); @@ -2652,19 +3000,17 @@ dill_stream s; x86_64_flush(s->p->code_base, s->p->code_limit); } -extern void * -x86_64_clone_code(s, new_base, available_size) -dill_stream s; -void *new_base; -int available_size; +extern void* +x86_64_clone_code(dill_stream s, void* new_base, int available_size) { int size = dill_code_size(s); - void *old_base = s->p->code_base; - void *native_base = s->p->code_base; + void* old_base = s->p->code_base; + void* native_base = s->p->code_base; if (available_size < size) { - return NULL; + return NULL; } - if (native_base == NULL) native_base = s->p->native.code_base; + if (native_base == NULL) + native_base = s->p->native.code_base; memcpy(new_base, native_base, size); s->p->code_base = new_base; s->p->cur_ip = (char*)new_base + size; @@ -2675,79 +3021,88 @@ int available_size; s->p->code_base = old_base; s->p->cur_ip = (char*)old_base + size; s->p->fp = old_base; + x86_64_flush(new_base, (char*)new_base + size); + return new_base; } extern void x86_64_pset(dill_stream s, int type, int junk, int dest, IMM_TYPE imm) { - switch(type) { - case DILL_L: case DILL_UL: case DILL_P: - x86_64_setl(s, dest, imm); - break; + switch (type) { + case DILL_L: + case DILL_UL: + case DILL_P: + x86_64_setl(s, dest, imm); + break; default: - x86_64_seti(s, dest, imm); - break; + x86_64_seti(s, dest, (int)imm); + break; } s->p->used_frame++; -} +} extern void x86_64_setf(dill_stream s, int type, int junk, int dest, double imm) { union { - float f; - int i; + float f; + int i; } a; union { - double d; - int i[2]; - intptr_t l; + double d; + int i[2]; + intptr_t l; } b; if (type == DILL_F) { - int rex = 0; - a.f = imm; - x86_64_seti(s, EAX, a.i); - if (dest > RDI) rex |= REX_R; - BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, dest, EAX)); + int rex = 0; + a.f = (float)imm; + x86_64_seti(s, EAX, a.i); + if (dest > RDI) + rex |= REX_R; + BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, dest, EAX)); } else { - int rex = REX_W; - b.d = imm; - x86_64_setl(s, EAX, b.l); - if (dest > RDI) rex |= REX_R; - BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, dest, EAX)); + int rex = REX_W; + b.d = imm; + x86_64_setl(s, EAX, b.l); + if (dest > RDI) + rex |= REX_R; + BYTE_OUT1R3(s, 0x66, rex, 0x0f, 0x6e, ModRM(0x3, dest, EAX)); } -} - +} -#define bit_R(x) (1<p->var_i.init_avail[0] = (bit_R(EBX)|bit_R(R12)|bit_R(R13)|bit_R(R14)|bit_R(R15)); + s->p->var_i.init_avail[0] = + (bit_R(EBX) | bit_R(R12) | bit_R(R13) | bit_R(R14) | bit_R(R15)); s->p->var_i.members[0] = s->p->var_i.init_avail[0]; s->p->tmp_i.init_avail[0] = (bit_R(R11)); s->p->tmp_i.members[0] = s->p->tmp_i.init_avail[0] | bit_R(EAX); s->p->var_f.init_avail[0] = 0; s->p->var_f.members[0] = s->p->var_f.init_avail[0]; - s->p->tmp_f.init_avail[0] = (bit_R(XMM8)|bit_R(XMM9)|bit_R(XMM10)|bit_R(XMM11)|bit_R(XMM12)|bit_R(XMM13)|bit_R(XMM14)|bit_R(XMM15)); - s->p->tmp_f.members[0] = s->p->tmp_f.init_avail[0]|bit_R(XMM0)|bit_R(XMM1)|bit_R(XMM2)|bit_R(XMM3)|bit_R(XMM4)|bit_R(XMM5)|bit_R(XMM6)|bit_R(XMM7); + s->p->tmp_f.init_avail[0] = + (bit_R(XMM8) | bit_R(XMM9) | bit_R(XMM10) | bit_R(XMM11) | + bit_R(XMM12) | bit_R(XMM13) | bit_R(XMM14) | bit_R(XMM15)); + s->p->tmp_f.members[0] = + s->p->tmp_f.init_avail[0] | bit_R(XMM0) | bit_R(XMM1) | bit_R(XMM2) | + bit_R(XMM3) | bit_R(XMM4) | bit_R(XMM5) | bit_R(XMM6) | bit_R(XMM7); } extern void* -gen_x86_64_mach_info(s) -dill_stream s; +gen_x86_64_mach_info(dill_stream s) { x86_64_mach_info smi = malloc(sizeof(*smi)); if (s->p->mach_info != NULL) { - free(s->p->mach_info); - s->p->mach_info = NULL; - s->p->native.mach_info = NULL; + free(s->p->mach_info); + s->p->mach_info = NULL; + s->p->native.mach_info = NULL; } x86_64_reg_init(s); smi->act_rec_size = 0; - smi->stack_align = 8; /* 8 for x86_64 */ + smi->stack_align = 8; /* 8 for x86_64 */ smi->stack_constant_offset = 0; /* 2047 for x86_64v9 */ smi->conversion_word = 0; smi->fcu_word = 0; @@ -2759,11 +3114,12 @@ dill_stream s; /* GENERIC BINUTILS DISASSEMBLER */ #include "dis-asm.h" -#define MAXLENGTH (1<<23) /* Max length of function that can be disassembled */ +#define MAXLENGTH \ + (1 << 23) /* Max length of function that can be disassembled */ #ifdef LINUX_KERNEL_MODULE extern int -kfprintf(FILE *file, const char *fmt, ...) +kfprintf(FILE* file, const char* fmt, ...) { static char printk_buf[1024]; int val; @@ -2775,16 +3131,16 @@ kfprintf(FILE *file, const char *fmt, ...) return val; } -#undef stdout +#undef stdout #define stdout (FILE*)0 #define FPRINTF_FUNCTION kfprintf #else #define FPRINTF_FUNCTION fprintf #endif extern int -x86_64_init_disassembly_info(dill_stream s, void * ptr) +x86_64_init_disassembly_info(dill_stream s, void* ptr) { - struct disassemble_info *i = ptr; + struct disassemble_info* i = ptr; #ifdef INIT_DISASSEMBLE_INFO_THREE_ARG INIT_DISASSEMBLE_INFO(*i, stdout, FPRINTF_FUNCTION); i->endian = BFD_ENDIAN_LITTLE; @@ -2794,11 +3150,11 @@ x86_64_init_disassembly_info(dill_stream s, void * ptr) i->mach = bfd_mach_x86_64; i->disassembler_options = "x86-64"; if (s->p->code_base != NULL) { - i->buffer = (bfd_byte *)s->p->code_base; - i->buffer_vma = (bfd_vma)s->p->code_base; + i->buffer = (bfd_byte*)s->p->code_base; + i->buffer_vma = (bfd_vma)s->p->code_base; } else { - i->buffer = (bfd_byte *)s->p->native.code_base; - i->buffer_vma = (bfd_vma)s->p->native.code_base; + i->buffer = (bfd_byte*)s->p->native.code_base; + i->buffer_vma = (bfd_vma)s->p->native.code_base; } i->buffer_length = MAXLENGTH; #ifdef HAVE_PRINT_INSN_I386 @@ -2809,7 +3165,7 @@ x86_64_init_disassembly_info(dill_stream s, void * ptr) } extern int -x86_64_print_insn(dill_stream s, void *info_ptr, void *insn) +x86_64_print_insn(dill_stream s, void* info_ptr, void* insn) { #ifdef HAVE_PRINT_INSN_I386 return print_insn_i386((bfd_vma)insn, info_ptr); @@ -2818,51 +3174,63 @@ x86_64_print_insn(dill_stream s, void *info_ptr, void *insn) #endif } -extern void null_func(){} +extern void +null_func() +{ +} extern int x86_64_count_insn(dill_stream s, int start, int end) { #ifdef HAVE_PRINT_INSN_I386 struct disassemble_info i; int count; - char *insn_ptr; + char* insn_ptr; #ifdef INIT_DISASSEMBLE_INFO_THREE_ARG - INIT_DISASSEMBLE_INFO(i, stdout, (fprintf_ftype) null_func); + INIT_DISASSEMBLE_INFO(i, stdout, (fprintf_ftype)null_func); i.endian = BFD_ENDIAN_LITTLE; #else INIT_DISASSEMBLE_INFO(i, stdout); #endif i.mach = bfd_mach_i386_i386; if (s->p->code_base != NULL) { - i.buffer = (bfd_byte *)s->p->code_base; - i.buffer_vma = (bfd_vma)s->p->code_base; + i.buffer = (bfd_byte*)s->p->code_base; + i.buffer_vma = (bfd_vma)s->p->code_base; } else { - i.buffer = (bfd_byte *)s->p->native.code_base; - i.buffer_vma = (bfd_vma)s->p->native.code_base; + i.buffer = (bfd_byte*)s->p->native.code_base; + i.buffer_vma = (bfd_vma)s->p->native.code_base; } i.buffer_length = MAXLENGTH; count = 0; - insn_ptr = (char*) (i.buffer + start); - while((intptr_t)insn_ptr < (intptr_t)i.buffer + end) { - insn_ptr += print_insn_i386((bfd_vma)insn_ptr, &i); - count++; + insn_ptr = (char*)(i.buffer + start); + while ((intptr_t)insn_ptr < (intptr_t)i.buffer + end) { + insn_ptr += print_insn_i386((bfd_vma)insn_ptr, &i); + count++; } return count; #else - /* no print insn, just return the buffer length */ + /* no print insn, just return the buffer length */ return end - start; #endif } #else extern int x86_64_count_insn(dill_stream s, int start, int end) -{ /* no print insn, just return the buffer length */ +{ /* no print insn, just return the buffer length */ return end - start; } extern int -x86_64_init_disassembly_info(dill_stream s, void * ptr){return 1;} -unsigned int x86_64_disassemble(unsigned char *bytes, unsigned int max, int offset, char *output); -extern int x86_64_print_insn(dill_stream s, void *info_ptr, void *insn){ +x86_64_init_disassembly_info(dill_stream s, void* ptr) +{ + return 1; +} +unsigned int +x86_64_disassemble(unsigned char* bytes, + unsigned int max, + int offset, + char* output); +extern int +x86_64_print_insn(dill_stream s, void* info_ptr, void* insn) +{ char out[128] = ""; int ret = x86_64_disassemble(insn, sizeof(out), 0, out); printf("%s", out); @@ -2873,30 +3241,35 @@ extern int x86_64_print_insn(dill_stream s, void *info_ptr, void *insn){ extern void x86_64_print_reg(dill_stream s, int typ, int reg) { - switch(typ) { - case DILL_C: case DILL_UC: - if ((reg > 0) && (reg < sizeof(char_regs)/sizeof(char_regs[0]))) { - printf("%s", char_regs[reg]); - return; - } - break; - case DILL_S: case DILL_US: - if ((reg > 0) && (reg < sizeof(short_regs)/sizeof(short_regs[0]))) { - printf("%s", short_regs[reg]); - return; - } - break; -/* case DILL_C: case DILL_UC: case DILL_S: case DILL_US:*/ - case DILL_I: case DILL_U: case DILL_L: case DILL_UL: - if ((reg > 0) && (reg < sizeof(int_regs)/sizeof(int_regs[0]))) { - printf("%s", int_regs[reg]); - return; - } - break; - case DILL_F: case DILL_D: - printf("Fstack"); - return; + switch (typ) { + case DILL_C: + case DILL_UC: + if ((reg > 0) && (reg < sizeof(char_regs) / sizeof(char_regs[0]))) { + printf("%s", char_regs[reg]); + return; + } + break; + case DILL_S: + case DILL_US: + if ((reg > 0) && (reg < sizeof(short_regs) / sizeof(short_regs[0]))) { + printf("%s", short_regs[reg]); + return; + } + break; + /* case DILL_C: case DILL_UC: case DILL_S: case DILL_US:*/ + case DILL_I: + case DILL_U: + case DILL_L: + case DILL_UL: + if ((reg > 0) && (reg < sizeof(int_regs) / sizeof(int_regs[0]))) { + printf("%s", int_regs[reg]); + return; + } + break; + case DILL_F: + case DILL_D: + printf("Fstack"); + return; } printf("NoReg(%d)", reg); } - diff --git a/x86_64.h b/x86_64.h index 048143512b..8bda58431e 100644 --- a/x86_64.h +++ b/x86_64.h @@ -1,163 +1,217 @@ #ifndef _X86_64_H #define _X86_64_H -#define BYTE_OUT1(c, insn1) \ -do { \ -if (c->p->cur_ip >= c->p->code_limit) {\ - extend_dill_stream(c);\ -}\ -*(unsigned char*)c->p->cur_ip = (unsigned char)insn1;\ -if (c->dill_debug) dump_cur_dill_insn(c);\ -c->p->cur_ip = ((char*)c->p->cur_ip)+1; \ -} while (0) +#define BYTE_OUT1(c, insn1) \ + do { \ + if (c->p->cur_ip >= c->p->code_limit) { \ + extend_dill_stream(c); \ + } \ + *(unsigned char*)c->p->cur_ip = (unsigned char)insn1; \ + if (c->dill_debug) \ + dump_cur_dill_insn(c); \ + c->p->cur_ip = ((char*)c->p->cur_ip) + 1; \ + } while (0) -#define BYTE_OUT2(c, insn1, insn2) \ -do { \ -if (c->p->cur_ip >= c->p->code_limit) {\ - extend_dill_stream(c);\ -}\ -*(unsigned char*)c->p->cur_ip = (unsigned char)insn1;\ -*(((unsigned char*)c->p->cur_ip) + 1)= (unsigned char)insn2;\ -if (c->dill_debug) dump_cur_dill_insn(c);\ -c->p->cur_ip = ((char*)c->p->cur_ip)+2; \ -} while (0) +#define BYTE_OUT2(c, insn1, insn2) \ + do { \ + if (c->p->cur_ip >= c->p->code_limit) { \ + extend_dill_stream(c); \ + } \ + *(unsigned char*)c->p->cur_ip = (unsigned char)insn1; \ + *(((unsigned char*)c->p->cur_ip) + 1) = (unsigned char)insn2; \ + if (c->dill_debug) \ + dump_cur_dill_insn(c); \ + c->p->cur_ip = ((char*)c->p->cur_ip) + 2; \ + } while (0) -#define BYTE_OUT3(c, insn1, insn2, insn3) \ -do { \ -if (c->p->cur_ip >= c->p->code_limit) {\ - extend_dill_stream(c);\ -}\ -*(unsigned char*)c->p->cur_ip = (unsigned char)insn1;\ -*(((unsigned char*)c->p->cur_ip) + 1)= (unsigned char)insn2;\ -*(((unsigned char*)c->p->cur_ip) + 2)= (unsigned char)insn3;\ -if (c->dill_debug) dump_cur_dill_insn(c);\ - c->p->cur_ip = ((char*)c->p->cur_ip)+3; \ -} while (0) +#define BYTE_OUT3(c, insn1, insn2, insn3) \ + do { \ + if (c->p->cur_ip >= c->p->code_limit) { \ + extend_dill_stream(c); \ + } \ + *(unsigned char*)c->p->cur_ip = (unsigned char)insn1; \ + *(((unsigned char*)c->p->cur_ip) + 1) = (unsigned char)insn2; \ + *(((unsigned char*)c->p->cur_ip) + 2) = (unsigned char)insn3; \ + if (c->dill_debug) \ + dump_cur_dill_insn(c); \ + c->p->cur_ip = ((char*)c->p->cur_ip) + 3; \ + } while (0) -#define BYTE_OUT4(c, insn1, insn2, insn3, insn4) \ -do { \ -if (c->p->cur_ip >= c->p->code_limit) {\ - extend_dill_stream(c);\ -}\ -*(unsigned char*)c->p->cur_ip = (unsigned char)insn1;\ -*(((unsigned char*)c->p->cur_ip) + 1)= (unsigned char)insn2;\ -*(((unsigned char*)c->p->cur_ip) + 2)= (unsigned char)insn3;\ -*(((unsigned char*)c->p->cur_ip) + 3)= (unsigned char)insn4;\ -if (c->dill_debug) dump_cur_dill_insn(c);\ - c->p->cur_ip = ((char*)c->p->cur_ip)+4; \ -} while (0) +#define BYTE_OUT4(c, insn1, insn2, insn3, insn4) \ + do { \ + if (c->p->cur_ip >= c->p->code_limit) { \ + extend_dill_stream(c); \ + } \ + *(unsigned char*)c->p->cur_ip = (unsigned char)insn1; \ + *(((unsigned char*)c->p->cur_ip) + 1) = (unsigned char)insn2; \ + *(((unsigned char*)c->p->cur_ip) + 2) = (unsigned char)insn3; \ + *(((unsigned char*)c->p->cur_ip) + 3) = (unsigned char)insn4; \ + if (c->dill_debug) \ + dump_cur_dill_insn(c); \ + c->p->cur_ip = ((char*)c->p->cur_ip) + 4; \ + } while (0) -#define BYTE_OUT5(c, insn1, insn2, insn3, insn4, insn5) \ -do { \ -if (c->p->cur_ip >= c->p->code_limit) {\ - extend_dill_stream(c);\ -}\ -*(unsigned char*)c->p->cur_ip = (unsigned char)insn1;\ -*(((unsigned char*)c->p->cur_ip) + 1)= (unsigned char)insn2;\ -*(((unsigned char*)c->p->cur_ip) + 2)= (unsigned char)insn3;\ -*(((unsigned char*)c->p->cur_ip) + 3)= (unsigned char)insn4;\ -*(((unsigned char*)c->p->cur_ip) + 4)= (unsigned char)insn5;\ -if (c->dill_debug) dump_cur_dill_insn(c);\ - c->p->cur_ip = ((char*)c->p->cur_ip)+5; \ -} while (0) +#define BYTE_OUT5(c, insn1, insn2, insn3, insn4, insn5) \ + do { \ + if (c->p->cur_ip >= c->p->code_limit) { \ + extend_dill_stream(c); \ + } \ + *(unsigned char*)c->p->cur_ip = (unsigned char)insn1; \ + *(((unsigned char*)c->p->cur_ip) + 1) = (unsigned char)insn2; \ + *(((unsigned char*)c->p->cur_ip) + 2) = (unsigned char)insn3; \ + *(((unsigned char*)c->p->cur_ip) + 3) = (unsigned char)insn4; \ + *(((unsigned char*)c->p->cur_ip) + 4) = (unsigned char)insn5; \ + if (c->dill_debug) \ + dump_cur_dill_insn(c); \ + c->p->cur_ip = ((char*)c->p->cur_ip) + 5; \ + } while (0) -#define BYTE_OUT6(c, insn1, insn2, insn3, insn4, insn5, insn6) \ -do { \ -if (c->p->cur_ip >= c->p->code_limit) {\ - extend_dill_stream(c);\ -}\ -*(unsigned char*)c->p->cur_ip = (unsigned char)insn1;\ -*(((unsigned char*)c->p->cur_ip) + 1)= (unsigned char)insn2;\ -*(((unsigned char*)c->p->cur_ip) + 2)= (unsigned char)insn3;\ -*(((unsigned char*)c->p->cur_ip) + 3)= (unsigned char)insn4;\ -*(((unsigned char*)c->p->cur_ip) + 4)= (unsigned char)insn5;\ -*(((unsigned char*)c->p->cur_ip) + 5)= (unsigned char)insn6;\ -if (c->dill_debug) dump_cur_dill_insn(c);\ - c->p->cur_ip = ((char*)c->p->cur_ip)+6; \ -} while (0) +#define BYTE_OUT6(c, insn1, insn2, insn3, insn4, insn5, insn6) \ + do { \ + if (c->p->cur_ip >= c->p->code_limit) { \ + extend_dill_stream(c); \ + } \ + *(unsigned char*)c->p->cur_ip = (unsigned char)insn1; \ + *(((unsigned char*)c->p->cur_ip) + 1) = (unsigned char)insn2; \ + *(((unsigned char*)c->p->cur_ip) + 2) = (unsigned char)insn3; \ + *(((unsigned char*)c->p->cur_ip) + 3) = (unsigned char)insn4; \ + *(((unsigned char*)c->p->cur_ip) + 4) = (unsigned char)insn5; \ + *(((unsigned char*)c->p->cur_ip) + 5) = (unsigned char)insn6; \ + if (c->dill_debug) \ + dump_cur_dill_insn(c); \ + c->p->cur_ip = ((char*)c->p->cur_ip) + 6; \ + } while (0) -#define BYTE_OUT3I(c, insn1, insn2, insn3, imm32) \ -do { \ -if (c->p->cur_ip >= c->p->code_limit) {\ - extend_dill_stream(c);\ -}\ -*(unsigned char*)c->p->cur_ip = (unsigned char)insn1;\ -*(((unsigned char*)c->p->cur_ip) + 1)= (unsigned char)insn2;\ -*(((unsigned char*)c->p->cur_ip) + 2)= (unsigned char)insn3;\ -*(unsigned int *)(((unsigned char*)c->p->cur_ip) + 3)= (unsigned int)imm32;\ -if (c->dill_debug) dump_cur_dill_insn(c);\ - c->p->cur_ip = ((char*)c->p->cur_ip)+7; \ -} while (0) +#define BYTE_OUT3I(c, insn1, insn2, insn3, imm32) \ + do { \ + if (c->p->cur_ip >= c->p->code_limit) { \ + extend_dill_stream(c); \ + } \ + *(unsigned char*)c->p->cur_ip = (unsigned char)insn1; \ + *(((unsigned char*)c->p->cur_ip) + 1) = (unsigned char)insn2; \ + *(((unsigned char*)c->p->cur_ip) + 2) = (unsigned char)insn3; \ + *(unsigned int*)(((unsigned char*)c->p->cur_ip) + 3) = \ + (unsigned int)imm32; \ + if (c->dill_debug) \ + dump_cur_dill_insn(c); \ + c->p->cur_ip = ((char*)c->p->cur_ip) + 7; \ + } while (0) -#define BYTE_OUT3S(c, insn1, insn2, insn3, imm16) \ -do { \ -if (c->p->cur_ip >= c->p->code_limit) {\ - extend_dill_stream(c);\ -}\ -*(unsigned char*)c->p->cur_ip = (unsigned char)insn1;\ -*(((unsigned char*)c->p->cur_ip) + 1)= (unsigned char)insn2;\ -*(((unsigned char*)c->p->cur_ip) + 2)= (unsigned char)insn3;\ -*(unsigned short *)(((unsigned char*)c->p->cur_ip) + 3)= (unsigned short)imm16;\ -if (c->dill_debug) dump_cur_dill_insn(c);\ - c->p->cur_ip = ((char*)c->p->cur_ip)+5; \ -} while (0) +#define BYTE_OUT3S(c, insn1, insn2, insn3, imm16) \ + do { \ + if (c->p->cur_ip >= c->p->code_limit) { \ + extend_dill_stream(c); \ + } \ + *(unsigned char*)c->p->cur_ip = (unsigned char)insn1; \ + *(((unsigned char*)c->p->cur_ip) + 1) = (unsigned char)insn2; \ + *(((unsigned char*)c->p->cur_ip) + 2) = (unsigned char)insn3; \ + *(unsigned short*)(((unsigned char*)c->p->cur_ip) + 3) = \ + (unsigned short)imm16; \ + if (c->dill_debug) \ + dump_cur_dill_insn(c); \ + c->p->cur_ip = ((char*)c->p->cur_ip) + 5; \ + } while (0) -#define BYTE_OUT1I(c, insn1, imm32) \ -do { \ -if (c->p->cur_ip >= c->p->code_limit) {\ - extend_dill_stream(c);\ -}\ -*(unsigned char*)c->p->cur_ip = (unsigned char)insn1;\ -*(unsigned int *)(((unsigned char*)c->p->cur_ip) + 1)= (unsigned int)imm32;\ -if (c->dill_debug) dump_cur_dill_insn(c);\ - c->p->cur_ip = ((char*)c->p->cur_ip)+5; \ -} while (0) +#define BYTE_OUT1I(c, insn1, imm32) \ + do { \ + if (c->p->cur_ip >= c->p->code_limit) { \ + extend_dill_stream(c); \ + } \ + *(unsigned char*)c->p->cur_ip = (unsigned char)insn1; \ + *(unsigned int*)(((unsigned char*)c->p->cur_ip) + 1) = \ + (unsigned int)imm32; \ + if (c->dill_debug) \ + dump_cur_dill_insn(c); \ + c->p->cur_ip = ((char*)c->p->cur_ip) + 5; \ + } while (0) -#define BYTE_OUT2I(c, insn1, insn2,imm32) \ -do { \ -unsigned int tmp = (unsigned int) imm32; \ -if (c->p->cur_ip >= c->p->code_limit) {\ - extend_dill_stream(c);\ -}\ -*(unsigned char*)c->p->cur_ip = (unsigned char)insn1;\ -*(((unsigned char*)c->p->cur_ip) + 1)= (unsigned char)insn2;\ -memcpy((((unsigned char*)c->p->cur_ip) + 2), &tmp, 4);\ -if (c->dill_debug) dump_cur_dill_insn(c);\ - c->p->cur_ip = ((char*)c->p->cur_ip)+6; \ -} while (0) +#define BYTE_OUT2I(c, insn1, insn2, imm32) \ + do { \ + unsigned int tmp = (unsigned int)imm32; \ + if (c->p->cur_ip >= c->p->code_limit) { \ + extend_dill_stream(c); \ + } \ + *(unsigned char*)c->p->cur_ip = (unsigned char)insn1; \ + *(((unsigned char*)c->p->cur_ip) + 1) = (unsigned char)insn2; \ + memcpy((((unsigned char*)c->p->cur_ip) + 2), &tmp, 4); \ + if (c->dill_debug) \ + dump_cur_dill_insn(c); \ + c->p->cur_ip = ((char*)c->p->cur_ip) + 6; \ + } while (0) -#define BYTE_OUT2II(c, insn1, insn2,imm32, imm32_2) \ -do { \ -unsigned int tmp = (unsigned int) imm32;\ -unsigned int tmp2 = (unsigned int) imm32_2;\ -if (c->p->cur_ip >= c->p->code_limit) {\ - extend_dill_stream(c);\ -}\ -*(unsigned char*)c->p->cur_ip = (unsigned char)insn1;\ -*(((unsigned char*)c->p->cur_ip) + 1)= (unsigned char)insn2;\ -memcpy((((unsigned char*)c->p->cur_ip) + 2), &tmp, 4);\ -memcpy((((unsigned char*)c->p->cur_ip) + 6), &tmp2, 4);\ -if (c->dill_debug) dump_cur_dill_insn(c);\ - c->p->cur_ip = ((char*)c->p->cur_ip)+10; \ -} while (0) - -#ifdef LINUX_KERNEL_MODULE -#undef EAX -#undef ECX -#undef EDX -#undef EBX -#undef ESP -#undef EBP -#undef ESI -#undef EDI -#endif +#define BYTE_OUT2II(c, insn1, insn2, imm32, imm32_2) \ + do { \ + unsigned int tmp = (unsigned int)imm32; \ + unsigned int tmp2 = (unsigned int)imm32_2; \ + if (c->p->cur_ip >= c->p->code_limit) { \ + extend_dill_stream(c); \ + } \ + *(unsigned char*)c->p->cur_ip = (unsigned char)insn1; \ + *(((unsigned char*)c->p->cur_ip) + 1) = (unsigned char)insn2; \ + memcpy((((unsigned char*)c->p->cur_ip) + 2), &tmp, 4); \ + memcpy((((unsigned char*)c->p->cur_ip) + 6), &tmp2, 4); \ + if (c->dill_debug) \ + dump_cur_dill_insn(c); \ + c->p->cur_ip = ((char*)c->p->cur_ip) + 10; \ + } while (0) enum { - AL = 0, CL, DL, BL, AH, CH, DH, BH, /* r8 */ - AX = 0, CX, DX, BX, SP, BP, SI, DI, /* r16 */ - EAX = 0, ECX, EDX, EBX, ESP, EBP, ESI, EDI, /* r32 */ - RAX = 0, RCX, RDX, RBX, RSP, RBP, RSI, RDI, R8, R9, R10, R11, R12, R13, R14, R15, /* r64 */ - XMM0 = 0, XMM1, XMM2, XMM3, XMM4, XMM5, XMM6, XMM7, XMM8, XMM9, XMM10, XMM11, XMM12, XMM13, XMM14, XMM15 + AL = 0, + CL, + DL, + BL, + AH, + CH, + DH, + BH, /* r8 */ + AX = 0, + CX, + DX, + BX, + SP, + BP, + SI, + DI, /* r16 */ + EAX = 0, + ECX, + EDX, + EBX, + ESP, + EBP, + ESI, + EDI, /* r32 */ + RAX = 0, + RCX, + RDX, + RBX, + RSP, + RBP, + RSI, + RDI, + R8, + R9, + R10, + R11, + R12, + R13, + R14, + R15, /* r64 */ + XMM0 = 0, + XMM1, + XMM2, + XMM3, + XMM4, + XMM5, + XMM6, + XMM7, + XMM8, + XMM9, + XMM10, + XMM11, + XMM12, + XMM13, + XMM14, + XMM15 }; #define REX_W 0x8 @@ -180,57 +234,124 @@ typedef struct x86_64_mach_info { int call_backpatch_offset; int call_stack_space; char pending_prefix; - char *last_proc_ret_end; + char* last_proc_ret_end; int varidiac_call; int non_var_args; -} *x86_64_mach_info; +} * x86_64_mach_info; extern int x86_64_type_align[]; extern int x86_64_type_size[]; -extern void *gen_x86_64_mach_info(); -extern void x86_64_arith3(dill_stream c, int op, int commut, int dest, int src1, int src2); -extern void x86_64_arith2(dill_stream c, int op, int subop, int dest, int src); -extern void x86_64_mul(dill_stream c, int signed, int imm, int dest, int src1, IMM_TYPE src2); +extern void* +gen_x86_64_mach_info(dill_stream s); +extern void +x86_64_arith3(dill_stream c, int op, int commut, int dest, int src1, int src2); +extern void +x86_64_arith2(dill_stream c, int op, int subop, int dest, int src); +extern void +x86_64_mul(dill_stream c, + int signed, + int imm, + int dest, + int src1, + IMM_TYPE src2); -extern void x86_64_div_mod(dill_stream c, int sign, int div, int dest, int src1, int src2); -extern void x86_64_div_modi(dill_stream c, int sign, int div, int dest, int src1, IMM_TYPE imm); -extern void x86_64_arith3i(dill_stream c, int op, int commut, int dest, int src1, IMM_TYPE src2); -extern void x86_64_shift(dill_stream c, int op, int junk, int dest, int src1, int src2); -extern void x86_64_shifti(dill_stream c, int op, int junk, int dest, int src, IMM_TYPE imm); -extern void x86_64_special(dill_stream c, special_operations type, IMM_TYPE param); -extern void x86_64_set(dill_stream c, int r, IMM_TYPE imm); -extern void x86_64_proc_start(dill_stream c, char *subr_name, int arg_count, - arg_info_list args, dill_reg *arglist); -extern void x86_64_end(dill_stream c); -extern void x86_64_package_end(dill_stream c); -extern void *x86_64_clone_code(dill_stream c, void *base, int size); -extern void x86_64_ret(dill_stream c, int data1, int data2, int src); -extern void x86_64_reti(dill_stream c, int data1, int data2, IMM_TYPE imm); -extern void x86_64_retf(dill_stream c, int data1, int data2, double imm); -extern int x86_64_getreg(dill_stream c, dill_reg *reg_p, int type, int class); -extern int x86_64_putreg(dill_stream c, dill_reg reg, int type); -extern void -x86_64_ploadi(dill_stream c, int type, int junk, int dest, int src, IMM_TYPE offset); +extern void +x86_64_div_mod(dill_stream c, int sign, int div, int dest, int src1, int src2); +extern void +x86_64_div_modi(dill_stream c, + int sign, + int div, + int dest, + int src1, + IMM_TYPE imm); +extern void +x86_64_arith3i(dill_stream c, + int op, + int commut, + int dest, + int src1, + IMM_TYPE src2); +extern void +x86_64_shift(dill_stream c, int op, int junk, int dest, int src1, int src2); +extern void +x86_64_shifti(dill_stream c, int op, int junk, int dest, int src, IMM_TYPE imm); +extern void +x86_64_special(dill_stream c, special_operations type, IMM_TYPE param); +extern void +x86_64_set(dill_stream c, int r, IMM_TYPE imm); +extern void +x86_64_proc_start(dill_stream c, + char* subr_name, + int arg_count, + arg_info_list args, + dill_reg* arglist); +extern void +x86_64_end(dill_stream c); +extern void +x86_64_package_end(dill_stream c); +extern void* +x86_64_clone_code(dill_stream c, void* base, int size); +extern void +x86_64_ret(dill_stream c, int data1, int data2, int src); +extern void +x86_64_reti(dill_stream c, int data1, int data2, IMM_TYPE imm); +extern void +x86_64_retf(dill_stream c, int data1, int data2, double imm); +extern int +x86_64_getreg(dill_stream c, dill_reg* reg_p, int type, int class); +extern int +x86_64_putreg(dill_stream c, dill_reg reg, int type); +extern void +x86_64_ploadi(dill_stream c, + int type, + int junk, + int dest, + int src, + IMM_TYPE offset); extern void x86_64_pload(dill_stream c, int type, int junk, int dest, int src1, int src2); extern void -x86_64_pbsloadi(dill_stream c, int type, int junk, int dest, int src, IMM_TYPE offset); +x86_64_pbsloadi(dill_stream c, + int type, + int junk, + int dest, + int src, + IMM_TYPE offset); extern void x86_64_pbsload(dill_stream c, int type, int junk, int dest, int src1, int src2); extern void -x86_64_pstorei(dill_stream c, int type, int junk, int dest, int src, IMM_TYPE offset); +x86_64_pstorei(dill_stream c, + int type, + int junk, + int dest, + int src, + IMM_TYPE offset); extern void x86_64_pstore(dill_stream c, int type, int junk, int dest, int src1, int src2); extern void -x86_64_modi(dill_stream c, int type, int junk, int dest, int src, IMM_TYPE offset); +x86_64_modi(dill_stream c, + int type, + int junk, + int dest, + int src, + IMM_TYPE offset); extern void x86_64_mod(dill_stream c, int type, int junk, int dest, int src1, int src2); extern void -x86_64_divi(dill_stream c, int type, int junk, int dest, int src, IMM_TYPE offset); +x86_64_divi(dill_stream c, + int type, + int junk, + int dest, + int src, + IMM_TYPE offset); extern void x86_64_div(dill_stream c, int type, int junk, int dest, int src1, int src2); extern void -x86_64_converti(dill_stream c, int from_type, int to_type, int dest, IMM_TYPE src); +x86_64_converti(dill_stream c, + int from_type, + int to_type, + int dest, + IMM_TYPE src); extern void x86_64_convert(dill_stream c, int from_type, int to_type, int dest, int src); extern void @@ -240,39 +361,67 @@ x86_64_pset(dill_stream c, int type, int junk, int dest, IMM_TYPE imm); extern void x86_64_setf(dill_stream c, int type, int junk, int dest, double imm); extern void -x86_64_setp(dill_stream c, int type, int junk, int dest, void *imm); +x86_64_setp(dill_stream c, int type, int junk, int dest, void* imm); extern void x86_64_branch(dill_stream c, int op, int type, int src1, int src2, int label); extern void -x86_64_branchi(dill_stream c, int op, int type, int src, IMM_TYPE imm, int label); +x86_64_branchi(dill_stream c, + int op, + int type, + int src, + IMM_TYPE imm, + int label); extern void x86_64_compare(dill_stream s, int op, int type, int dest, int src1, int src2); extern void -x86_64_comparei(dill_stream s, int op, int type, int dest, int src, IMM_TYPE imm); -extern void +x86_64_comparei(dill_stream s, + int op, + int type, + int dest, + int src, + IMM_TYPE imm); +extern void x86_64_lea(dill_stream c, int junk, int junk1, int dest, int src, IMM_TYPE imm); -extern void +extern void x86_64_farith(dill_stream c, int op, int typ, int dest, int src1, int src2); -extern void +extern void x86_64_farith2(dill_stream c, int op, int typ, int dest, int src); -extern void x86_64_bswap(dill_stream c, int op, int typ, int dest, int src); -extern void x86_64_jump_to_label(dill_stream c, unsigned long label); -extern void x86_64_jump_to_reg(dill_stream c, unsigned long reg); -extern void x86_64_jump_to_imm(dill_stream c, void *imm); -extern void x86_64_jal(dill_stream c, int return_addr_reg, int target); -extern int x86_64_calli(dill_stream c, int type, void *xfer_address, const char *name); -extern int x86_64_callr(dill_stream c, int type, int src); -extern void x86_64_push(dill_stream c, int type, int reg); -extern void x86_64_pushi(dill_stream c, int type, IMM_TYPE value); -extern void x86_64_pushpi(dill_stream c, int type, void *value); -extern void x86_64_pushfi(dill_stream c, int type, double value); -extern int x86_64_local_op(dill_stream c, int flag, int val); -extern int x86_64_local(dill_stream c, int type); -extern int x86_64_localb(dill_stream c, int size); -extern void x86_64_save_restore_op(dill_stream c, int save_restore, int type, - int reg); -extern int x86_64_init_disassembly_info(dill_stream c, void * ptr); -extern int x86_64_print_insn(dill_stream c, void *info_ptr, void *insn); -extern int x86_64_count_insn(dill_stream c, int start, int end); -extern void x86_64_print_reg(dill_stream c, int typ, int reg); +extern void +x86_64_bswap(dill_stream c, int op, int typ, int dest, int src); +extern void +x86_64_jump_to_label(dill_stream c, unsigned long label); +extern void +x86_64_jump_to_reg(dill_stream c, unsigned long reg); +extern void +x86_64_jump_to_imm(dill_stream c, void* imm); +extern void +x86_64_jal(dill_stream c, int return_addr_reg, int target); +extern int +x86_64_calli(dill_stream c, int type, void* xfer_address, const char* name); +extern int +x86_64_callr(dill_stream c, int type, int src); +extern void +x86_64_push(dill_stream c, int type, int reg); +extern void +x86_64_pushi(dill_stream c, int type, IMM_TYPE value); +extern void +x86_64_pushpi(dill_stream c, int type, void* value); +extern void +x86_64_pushfi(dill_stream c, int type, double value); +extern int +x86_64_local_op(dill_stream c, int flag, int val); +extern int +x86_64_local(dill_stream c, int type); +extern int +x86_64_localb(dill_stream c, int size); +extern void +x86_64_save_restore_op(dill_stream c, int save_restore, int type, int reg); +extern int +x86_64_init_disassembly_info(dill_stream c, void* ptr); +extern int +x86_64_print_insn(dill_stream c, void* info_ptr, void* insn); +extern int +x86_64_count_insn(dill_stream c, int start, int end); +extern void +x86_64_print_reg(dill_stream c, int typ, int reg); #endif diff --git a/x86_64_disassembler.c b/x86_64_disassembler.c index 4bd4217ef8..7cf6c50df4 100644 --- a/x86_64_disassembler.c +++ b/x86_64_disassembler.c @@ -1,750 +1,796 @@ /* - * This file is not an official part of DILL, but is included temporarily for debugging purposes. - * It is a modification of disassembler.c from https://github.com/btbd/disassembler. (Modified to compile on windows.) And is subject to the APACHE license. + * This file is not an official part of DILL, but is included temporarily for + * debugging purposes. It is a modification of disassembler.c from + * https://github.com/btbd/disassembler. (Modified to compile on windows.) And + * is subject to the APACHE license. */ #include #include #include -unsigned int x86_64_disassemble(unsigned char *bytes, unsigned int max, int offset, char *output) { - static char register_mnemonics8[][0xF] = { "al", "cl", "dl", "bl", "ah", "ch", "dh", "bh" }; - static char register_mnemonics16[][0xF] = { "ax", "cx", "dx", "bx", "ax", "cx", "dx", "bx" }; - static char register_mnemonics32[][0xF] = { "eax", "ecx", "edx", "ebx", "esp", "ebp", "esi", "edi" }; +unsigned int +x86_64_disassemble(unsigned char* bytes, + unsigned int max, + int offset, + char* output) +{ + static char register_mnemonics8[][0xF] = {"al", "cl", "dl", "bl", + "ah", "ch", "dh", "bh"}; + static char register_mnemonics16[][0xF] = {"ax", "cx", "dx", "bx", + "ax", "cx", "dx", "bx"}; + static char register_mnemonics32[][0xF] = {"eax", "ecx", "edx", "ebx", + "esp", "ebp", "esi", "edi"}; - static char sib_base_mnemonics[][0xF] = { "[eax", "[ecx", "[edx", "[ebx", "[esp", "[ebp", "[esi", "[edi" }; - static char sib_scale_mnemonics[][0xF] = { "*1", "*2", "*4", "*8" }; + static char sib_base_mnemonics[][0xF] = {"[eax", "[ecx", "[edx", "[ebx", + "[esp", "[ebp", "[esi", "[edi"}; + static char sib_scale_mnemonics[][0xF] = {"*1", "*2", "*4", "*8"}; - enum { - AL, EAX, ES, CS, SS, DS, ONE, CL, XMM0, BND0, BAD, MM0, - IMM8, IMM16, IMM32, REL8, REL32, PTR1632, R, RM, - BYTE, WORD, DWORD, QWORD, FWORD, XMMWORD - }; + enum { + AL, + EAX, + ES, + CS, + SS, + DS, + ONE, + CL, + XMM0, + BND0, + BAD, + MM0, + IMM8, + IMM16, + IMM32, + REL8, + REL32, + PTR1632, + R, + RM, + BYTE, + WORD, + DWORD, + QWORD, + FWORD, + XMMWORD + }; - typedef struct { - char hasModRM, size; - char mnemonic[0xFF]; - char argument_count; - char arguments[4]; - } INSTRUCTION; + typedef struct { + char hasModRM, size; + char mnemonic[0xFF]; + char argument_count; + char arguments[4]; + } INSTRUCTION; - static INSTRUCTION standard_instructions[] = { - { 1, BYTE, "add ", 2, {RM, R} }, // 0 - { 1, DWORD, "add ", 2, {RM, R} }, // 1 - { 1, BYTE, "add ", 2, {R, RM} }, // 2 - { 1, DWORD, "add ", 2, {R, RM} }, // 3 - { 0, 0, "add ", 2, {AL, IMM8} }, // 4 - { 0, 0, "add ", 2, {EAX, IMM32} }, // 5 - { 0, 0, "push es", 0 }, // 6 - { 0, 0, "pop es", 0 }, // 7 - { 1, BYTE, "or ", 2, {RM, R} }, // 8 - { 1, DWORD, "or ", 2, {RM, R} }, // 9 - { 1, BYTE, "or ", 2, {R, RM} }, // A - { 1, DWORD, "or ", 2, {R, RM} }, // B - { 0, 0, "or ", 2, {AL, IMM8} }, // C - { 0, 0, "or ", 2, {EAX, IMM32} }, // D - { 0, 0, "push cs", 0 }, // E - { 0 }, // F - Two-byte instructions - { 1, BYTE, "adc ", 2, {RM, R} }, // 10 - { 1, DWORD, "adc ", 2, {RM, R} }, // 11 - { 1, BYTE, "adc ", 2, {R, RM} }, // 12 - { 1, DWORD, "adc ", 2, {R, RM} }, // 13 - { 0, 0, "adc ", 2, {AL, IMM8} }, // 14 - { 0, 0, "adc ", 2, {EAX, IMM32} }, // 15 - { 0, 0, "push ss", 0 }, // 16 - { 0, 0, "pop ss", 0 }, // 17 - { 1, BYTE, "sbb ", 2, {RM, R} }, // 18 - { 1, DWORD, "sbb ", 2, {RM, R} }, // 19 - { 1, BYTE, "sbb ", 2, {R, RM} }, // 1A - { 1, DWORD, "sbb ", 2, {R, R} }, // 1B - { 0, 0, "sbb ", 2, {AL, IMM8} }, // 1C - { 0, 0, "sbb ", 2, {EAX, IMM32} }, // 1D - { 0, 0, "push ds", 0 }, // 1E - { 0, 0, "pop ds", 0 }, // 1F - { 1, BYTE, "and ", 2, {RM, R} }, // 20 - { 1, DWORD, "and ", 2, {RM, R} }, // 21 - { 1, BYTE, "and ", 2, {R, RM} }, // 22 - { 1, DWORD, "and ", 2, {R, RM} }, // 23 - { 0, 0, "and ", 2, {AL, IMM8} }, // 24 - { 0, 0, "and ", 2, {EAX, IMM32} }, // 25 - { 0, 0, "es ", 0 }, // 26 - { 0, 0, "daa ", 0 }, // 27 - { 1, BYTE, "sub ", 2, {RM, R} }, // 28 - { 1, DWORD, "sub ", 2, {RM, R} }, // 29 - { 1, BYTE, "sub ", 2, {R, RM} }, // 2A - { 1, DWORD, "sub ", 2, {R, RM} }, // 2B - { 0, 0, "sub ", 2, {AL, IMM8} }, // 2C - { 0, 0, "sub ", 2, {EAX, IMM32} }, // 2D - { 0, 0, "cs ", 0 }, // 2E - { 0, 0, "das ", 0 }, // 2F - { 1, BYTE, "xor ", 2, {RM, R} }, // 30 - { 1, DWORD, "xor ", 2, {RM, R} }, // 31 - { 1, BYTE, "xor ", 2, {R, RM} }, // 32 - { 1, DWORD, "xor ", 2, {R, RM} }, // 33 - { 0, 0, "xor ", 2, {AL, IMM8} }, // 34 - { 0, 0, "xor ", 2, {EAX, IMM32} }, // 35 - { 0, 0, "ss ", 0 }, // 36 - { 0, 0, "aaa ", 0 }, // 37 - { 1, BYTE, "cmp ", 2, {RM, R} }, // 38 - { 1, DWORD, "cmp ", 2, {RM, R} }, // 39 - { 1, BYTE, "cmp ", 2, {R, RM} }, // 3A - { 1, DWORD, "cmp ", 2, {R, RM} }, // 3B - { 0, 0, "cmp ", 2, {AL, IMM8} }, // 3C - { 0, 0, "cmp ", 2, {EAX, IMM32} }, // 3D - { 0, 0, "ds ", 0 }, // 3E - { 0, 0, "aas ", 0 }, // 3F - { 0, 0, "inc eax", 0 }, // 40 - { 0, 0, "inc ecx", 0 }, // 41 - { 0, 0, "inc edx", 0 }, // 42 - { 0, 0, "inc ebx", 0 }, // 43 - { 0, 0, "inc esp", 0 }, // 44 - { 0, 0, "inc ebp", 0 }, // 45 - { 0, 0, "inc esi", 0 }, // 46 - { 0, 0, "inc edi", 0 }, // 47 - { 0, 0, "dec eax", 0 }, // 48 - { 0, 0, "dec ecx", 0 }, // 49 - { 0, 0, "dec edx", 0 }, // 4A - { 0, 0, "dec ebx", 0 }, // 4B - { 0, 0, "dec esp", 0 }, // 4C - { 0, 0, "dec ebp", 0 }, // 4D - { 0, 0, "dec esi", 0 }, // 4E - { 0, 0, "dec edi", 0 }, // 4F - { 0, 0, "push eax", 0 }, // 50 - { 0, 0, "push ecx", 0 }, // 51 - { 0, 0, "push edx", 0 }, // 52 - { 0, 0, "push ebx", 0 }, // 53 - { 0, 0, "push esp", 0 }, // 54 - { 0, 0, "push ebp", 0 }, // 55 - { 0, 0, "push esi", 0 }, // 56 - { 0, 0, "push edi", 0 }, // 57 - { 0, 0, "pop eax", 0 }, // 58 - { 0, 0, "pop ecx", 0 }, // 59 - { 0, 0, "pop edx", 0 }, // 5A - { 0, 0, "pop ebx", 0 }, // 5B - { 0, 0, "pop esp", 0 }, // 5C - { 0, 0, "pop ebp", 0 }, // 5D - { 0, 0, "pop esi", 0 }, // 5E - { 0, 0, "pop edi", 0 }, // 5F - { 0, 0, "pusha", 0 }, // 60 - { 0, 0, "popa", 0 }, // 61 - { 1, QWORD, "bound ", 2, {R, RM} }, // 62 - { 1, WORD, "arpl ", 2, {RM, R} }, // 63 - { 0, 0, "fs ", 0 }, // 64 - { 0, 0, "gs ", 0 }, // 65 - { 0, 0, "data16 ", 0 }, // 66 - { 0, 0, "addr16 ", 0 }, // 67 - { 0, 0, "push ", 1, {IMM32} }, // 68 - { 1, DWORD, "imul ", 3, {R, RM, IMM32} }, // 69 - { 0, 0, "push ", 1, {IMM8} }, // 6A - { 1, DWORD, "imul ", 3, {R, RM, IMM8} }, // 6B - { 0, 0, "ins BYTE PTR es:[edi],dx", 0 }, // 6C - { 0, 0, "ins DWORD PTR es:[edi],dx", 0 }, // 6D - { 0, 0, "outs dx,BYTE PTR ds:[esi]", 0 }, // 6E - { 0, 0, "outs dx,DWORD PTR ds:[esi]", 0 }, // 6F - { 0, 0, "jo ", 1, {REL8} }, // 70 - { 0, 0, "jno ", 1, {REL8} }, // 71 - { 0, 0, "jb ", 1, {REL8} }, // 72 - { 0, 0, "jnb ", 1, {REL8} }, // 73 - { 0, 0, "jz ", 1, {REL8} }, // 74 - { 0, 0, "jne ", 1, {REL8} }, // 75 - { 0, 0, "jbe ", 1, {REL8} }, // 76 - { 0, 0, "ja ", 1, {REL8} }, // 77 - { 0, 0, "js ", 1, {REL8} }, // 78 - { 0, 0, "jns ", 1, {REL8} }, // 79 - { 0, 0, "jp ", 1, {REL8} }, // 7A - { 0, 0, "jnp ", 1, {REL8} }, // 7B - { 0, 0, "jl ", 1, {REL8} }, // 7C - { 0, 0, "jnl ", 1, {REL8} }, // 7D - { 0, 0, "jle ", 1, {REL8} }, // 7E - { 0, 0, "jnle ", 1, {REL8} }, // 7F - { 1, BYTE, "add ", 2, {RM, IMM8} }, // 80 - { 1, DWORD, "add ", 2, {RM, IMM32} }, // 81 - { 0, 0, ".byte 0x82", 0 }, // 82 - { 1, DWORD, "adc ", 2, {RM, IMM8} }, // 83 - { 1, BYTE, "test ", 2, {RM, R} }, // 84 - { 1, DWORD, "test ", 2, {RM, R} }, // 85 - { 1, BYTE, "xchg ", 2, {RM, R} }, // 86 - { 1, DWORD, "xchg ", 2, {RM, R} }, // 87 - { 1, BYTE, "mov ", 2, {RM, R} }, // 88 - { 1, DWORD, "mov ", 2, {RM, R} }, // 89 - { 1, BYTE, "mov ", 2, {R, RM} }, // 8A - { 1, DWORD, "mov ", 2, {R, RM} }, // 8B - { 1, WORD, "mov ", 2, {RM, SS} }, // 8C - { 1, 0, "lea ", 2, {R, RM} }, // 8D - { 1, WORD, "mov ss,", 1, {RM} }, // 8E - { 1, DWORD, "pop ", 1, {RM} }, // 8F - { 0, 0, "nop", 0 }, // 90 - { 0, 0, "xchg ecx,eax", 0 }, // 91 - { 0, 0, "xchg edx,eax", 0 }, // 92 - { 0, 0, "xchg ebx,eax", 0 }, // 93 - { 0, 0, "xchg esp,eax", 0 }, // 94 - { 0, 0, "xchg ebp,eax", 0 }, // 95 - { 0, 0, "xchg esi,eax", 0 }, // 96 - { 0, 0, "xchg edi,eax", 0 }, // 97 - { 0, 0, "cwde", 0 }, // 98 - { 0, 0, "cdq", 0 }, // 99 - { 0, 0, "call ", 1, {PTR1632} }, // 9A - { 0, 0, "fwait", 0 }, // 9B - { 0, 0, "pushf", 0 }, // 9C - { 0, 0, "popf", 0 }, // 9D - { 0, 0, "sahf", 0 }, // 9E - { 0, 0, "lahf", 0 }, // 9F - { 0, 0, "mov al,ds:", 1, {IMM8} }, // A0 - { 0, 0, "mov eax,ds:", 1, {IMM8} }, // A1 - { 0, 0, "mov ds:", 2, {IMM8, AL} }, // A2 - { 0, 0, "mov ds:", 2, {IMM32, EAX} }, // A3 - { 0, 0, "movs BYTE PTR es:[edi],BYTE PTR ds:[esi]", 0 }, // A4 - { 0, 0, "movs DWORD PTR es:[edi],DWORD PTR ds:[esi]", 0 }, // A5 - { 0, 0, "cmps BYTE PTR es:[esi],BYTE PTR ds:[edi]", 0 }, // A6 - { 0, 0, "cmps DWORD PTR es:[esi],DWORD PTR ds:[edi]", 0 }, // A7 - { 0, 0, "test al,", 1, {IMM8} }, // A8 - { 0, 0, "test eax,", 1, {IMM32} }, // A9 - { 0, 0, "stos BYTE PTR es:[edi],al", 0 }, // AA - { 0, 0, "stos DWORD PTR es:[edi],eax", 0 }, // AB - { 0, 0, "lods al,BYTE PTR ds:[esi]", 0 }, // AC - { 0, 0, "lods eax,DWORD PTR ds:[esi]", 0 }, // AD - { 0, 0, "scas al,BYTE PTR es:[edi]", 0 }, // AE - { 0, 0, "scas eax,DWORD PTR es:[edi]", 0 }, // AF - { 0, 0, "mov al,", 1, {IMM8} }, // B0 - { 0, 0, "mov cl,", 1, {IMM8} }, // B1 - { 0, 0, "mov dl,", 1, {IMM8} }, // B2 - { 0, 0, "mov bl,", 1, {IMM8} }, // B3 - { 0, 0, "mov ah,", 1, {IMM8} }, // B4 - { 0, 0, "mov ch,", 1, {IMM8} }, // B5 - { 0, 0, "mov dh,", 1, {IMM8} }, // B6 - { 0, 0, "mov bh,", 1, {IMM8} }, // B7 - { 0, 0, "mov eax,", 1, {IMM32} }, // B8 - { 0, 0, "mov ecx,", 1, {IMM32} }, // B9 - { 0, 0, "mov edx,", 1, {IMM32} }, // BA - { 0, 0, "mov ebx,", 1, {IMM32} }, // BB - { 0, 0, "mov esp,", 1, {IMM32} }, // BC - { 0, 0, "mov ebp,", 1, {IMM32} }, // BD - { 0, 0, "mov esi,", 1, {IMM32} }, // BE - { 0, 0, "mov edi,", 1, {IMM32} }, // BF - { 1, BYTE, "rol ", 2, {RM, IMM8} }, // C0 - { 1, DWORD, "rol ", 2, {RM, IMM8} }, // C1 - { 0, 0, "ret ", 1, {IMM16} }, // C2 - { 0, 0, "ret", 0 }, // C3 - { 1, FWORD, "les eax,", 1, {RM} }, // C4 - { 1, FWORD, "lds eax,", 1, {RM} }, // C5 - { 1, BYTE, "mov ", 2, {RM, IMM8} }, // C6 - { 1, DWORD, "mov ", 2, {RM, IMM32} }, // C7 - { 0, 0, "enter ", 2, {IMM16, IMM8} }, // C8 - { 0, 0, "leave", 0 }, // C9 - { 0, 0, "retf ", 1, {IMM16} }, // CA - { 0, 0, "retf", 0 }, // CB - { 0, 0, "int3", 0 }, // CC - { 0, 0, "int ", 1, {IMM8} }, // CD - { 0, 0, "into", 0 }, // CE - { 0, 0, "iret", 0 }, // CF - { 1, BYTE, "rol ", 2, {RM, ONE} }, // D0 - { 1, DWORD, "rol ", 2, {RM, ONE} }, // D1 - { 1, BYTE, "rol ", 2, {RM, CL} }, // D2 - { 1, DWORD, "rol ", 2, {RM, CL} }, // D3 - { 0, 0, "aam ", 1, {IMM8} }, // D4 - { 0, 0, "aad ", 1, {IMM8} }, // D5 - { 0, 0, ".byte 0xd6", 0 }, // D6 - { 0, 0, "xlat BYTE PTR ds:[ebx]", 0 }, // D7 - { 1, DWORD, "fadd ", 1, {RM} }, // D8 - { 1, DWORD, "fld ", 1, {RM} }, // D9 - { 1, DWORD, "fiadd ", 1, {RM} }, // DA - { 1, DWORD, "fild ", 1, {RM} }, // DB - { 1, QWORD, "fadd ", 1, {RM} }, // DC - { 1, QWORD, "fld ", 1, {RM} }, // DD - { 1, WORD, "fiadd ", 1, {RM} }, // DE - { 1, WORD, "fild ", 1, {RM} }, // DF - { 0, 0, "loopne ", 1, {REL8} }, // E0 - { 0, 0, "loope ", 1, {REL8} }, // E1 - { 0, 0, "loop ", 1, {REL8} }, // E2 - { 0, 0, "jecxz ", 1, {REL8} }, // E3 - { 0, 0, "in al,", 1, {IMM8} }, // E4 - { 0, 0, "in eax,", 1, {IMM8} }, // E5 - { 0, 0, "out ", 2, {IMM8, AL} }, // E6 - { 0, 0, "out ", 2, {IMM8, EAX} }, // E7 - { 0, 0, "call ", 1, {REL32} }, // E8 - { 0, 0, "jmp ", 1, {REL32} }, // E9 - { 0, 0, "jmpf ", 1, {PTR1632} }, // EA - { 0, 0, "jmp ", 1, {REL8} }, // EB - { 0, 0, "in al,dx", 0 }, // EC - { 0, 0, "in eax,dx", 0 }, // ED - { 0, 0, "out dx,al", 0 }, // EE - { 0, 0, "out dx,eax", 0 }, // EF - { 0, 0, "lock ", 0 }, // F0 - { 0, 0, "icebp", 0 }, // F1 - { 0, 0, "repnz ", 0 }, // F2 - { 0, 0, "repz", 0 }, // F3 - { 0, 0, "hlt", 0 }, // F4 - { 0, 0, "cmc", 0 }, // F5 - { 1, BYTE, "test ", 2, {RM, IMM8} }, // F6 - { 1, DWORD, "test ", 2, {RM, IMM32} }, // F7 - { 0, 0, "clc", 0 }, // F8 - { 0, 0, "stc", 0 }, // F9 - { 0, 0, "cli", 0 }, // FA - { 0, 0, "sti", 0 }, // FB - { 0, 0, "cld", 0 }, // FC - { 0, 0, "std", 0 }, // FD - { 1, BYTE, "inc ", 1, {RM} }, // FE - { 1, DWORD, "inc ", 1, {RM} } // FF - }; + static INSTRUCTION standard_instructions[] = { + {1, BYTE, "add ", 2, {RM, R}}, // 0 + {1, DWORD, "add ", 2, {RM, R}}, // 1 + {1, BYTE, "add ", 2, {R, RM}}, // 2 + {1, DWORD, "add ", 2, {R, RM}}, // 3 + {0, 0, "add ", 2, {AL, IMM8}}, // 4 + {0, 0, "add ", 2, {EAX, IMM32}}, // 5 + {0, 0, "push es", 0}, // 6 + {0, 0, "pop es", 0}, // 7 + {1, BYTE, "or ", 2, {RM, R}}, // 8 + {1, DWORD, "or ", 2, {RM, R}}, // 9 + {1, BYTE, "or ", 2, {R, RM}}, // A + {1, DWORD, "or ", 2, {R, RM}}, // B + {0, 0, "or ", 2, {AL, IMM8}}, // C + {0, 0, "or ", 2, {EAX, IMM32}}, // D + {0, 0, "push cs", 0}, // E + {0}, // F - Two-byte instructions + {1, BYTE, "adc ", 2, {RM, R}}, // 10 + {1, DWORD, "adc ", 2, {RM, R}}, // 11 + {1, BYTE, "adc ", 2, {R, RM}}, // 12 + {1, DWORD, "adc ", 2, {R, RM}}, // 13 + {0, 0, "adc ", 2, {AL, IMM8}}, // 14 + {0, 0, "adc ", 2, {EAX, IMM32}}, // 15 + {0, 0, "push ss", 0}, // 16 + {0, 0, "pop ss", 0}, // 17 + {1, BYTE, "sbb ", 2, {RM, R}}, // 18 + {1, DWORD, "sbb ", 2, {RM, R}}, // 19 + {1, BYTE, "sbb ", 2, {R, RM}}, // 1A + {1, DWORD, "sbb ", 2, {R, R}}, // 1B + {0, 0, "sbb ", 2, {AL, IMM8}}, // 1C + {0, 0, "sbb ", 2, {EAX, IMM32}}, // 1D + {0, 0, "push ds", 0}, // 1E + {0, 0, "pop ds", 0}, // 1F + {1, BYTE, "and ", 2, {RM, R}}, // 20 + {1, DWORD, "and ", 2, {RM, R}}, // 21 + {1, BYTE, "and ", 2, {R, RM}}, // 22 + {1, DWORD, "and ", 2, {R, RM}}, // 23 + {0, 0, "and ", 2, {AL, IMM8}}, // 24 + {0, 0, "and ", 2, {EAX, IMM32}}, // 25 + {0, 0, "es ", 0}, // 26 + {0, 0, "daa ", 0}, // 27 + {1, BYTE, "sub ", 2, {RM, R}}, // 28 + {1, DWORD, "sub ", 2, {RM, R}}, // 29 + {1, BYTE, "sub ", 2, {R, RM}}, // 2A + {1, DWORD, "sub ", 2, {R, RM}}, // 2B + {0, 0, "sub ", 2, {AL, IMM8}}, // 2C + {0, 0, "sub ", 2, {EAX, IMM32}}, // 2D + {0, 0, "cs ", 0}, // 2E + {0, 0, "das ", 0}, // 2F + {1, BYTE, "xor ", 2, {RM, R}}, // 30 + {1, DWORD, "xor ", 2, {RM, R}}, // 31 + {1, BYTE, "xor ", 2, {R, RM}}, // 32 + {1, DWORD, "xor ", 2, {R, RM}}, // 33 + {0, 0, "xor ", 2, {AL, IMM8}}, // 34 + {0, 0, "xor ", 2, {EAX, IMM32}}, // 35 + {0, 0, "ss ", 0}, // 36 + {0, 0, "aaa ", 0}, // 37 + {1, BYTE, "cmp ", 2, {RM, R}}, // 38 + {1, DWORD, "cmp ", 2, {RM, R}}, // 39 + {1, BYTE, "cmp ", 2, {R, RM}}, // 3A + {1, DWORD, "cmp ", 2, {R, RM}}, // 3B + {0, 0, "cmp ", 2, {AL, IMM8}}, // 3C + {0, 0, "cmp ", 2, {EAX, IMM32}}, // 3D + {0, 0, "ds ", 0}, // 3E + {0, 0, "aas ", 0}, // 3F + {0, 0, "inc eax", 0}, // 40 + {0, 0, "inc ecx", 0}, // 41 + {0, 0, "inc edx", 0}, // 42 + {0, 0, "inc ebx", 0}, // 43 + {0, 0, "inc esp", 0}, // 44 + {0, 0, "inc ebp", 0}, // 45 + {0, 0, "inc esi", 0}, // 46 + {0, 0, "inc edi", 0}, // 47 + {0, 0, "dec eax", 0}, // 48 + {0, 0, "dec ecx", 0}, // 49 + {0, 0, "dec edx", 0}, // 4A + {0, 0, "dec ebx", 0}, // 4B + {0, 0, "dec esp", 0}, // 4C + {0, 0, "dec ebp", 0}, // 4D + {0, 0, "dec esi", 0}, // 4E + {0, 0, "dec edi", 0}, // 4F + {0, 0, "push eax", 0}, // 50 + {0, 0, "push ecx", 0}, // 51 + {0, 0, "push edx", 0}, // 52 + {0, 0, "push ebx", 0}, // 53 + {0, 0, "push esp", 0}, // 54 + {0, 0, "push ebp", 0}, // 55 + {0, 0, "push esi", 0}, // 56 + {0, 0, "push edi", 0}, // 57 + {0, 0, "pop eax", 0}, // 58 + {0, 0, "pop ecx", 0}, // 59 + {0, 0, "pop edx", 0}, // 5A + {0, 0, "pop ebx", 0}, // 5B + {0, 0, "pop esp", 0}, // 5C + {0, 0, "pop ebp", 0}, // 5D + {0, 0, "pop esi", 0}, // 5E + {0, 0, "pop edi", 0}, // 5F + {0, 0, "pusha", 0}, // 60 + {0, 0, "popa", 0}, // 61 + {1, QWORD, "bound ", 2, {R, RM}}, // 62 + {1, WORD, "arpl ", 2, {RM, R}}, // 63 + {0, 0, "fs ", 0}, // 64 + {0, 0, "gs ", 0}, // 65 + {0, 0, "data16 ", 0}, // 66 + {0, 0, "addr16 ", 0}, // 67 + {0, 0, "push ", 1, {IMM32}}, // 68 + {1, DWORD, "imul ", 3, {R, RM, IMM32}}, // 69 + {0, 0, "push ", 1, {IMM8}}, // 6A + {1, DWORD, "imul ", 3, {R, RM, IMM8}}, // 6B + {0, 0, "ins BYTE PTR es:[edi],dx", 0}, // 6C + {0, 0, "ins DWORD PTR es:[edi],dx", 0}, // 6D + {0, 0, "outs dx,BYTE PTR ds:[esi]", 0}, // 6E + {0, 0, "outs dx,DWORD PTR ds:[esi]", 0}, // 6F + {0, 0, "jo ", 1, {REL8}}, // 70 + {0, 0, "jno ", 1, {REL8}}, // 71 + {0, 0, "jb ", 1, {REL8}}, // 72 + {0, 0, "jnb ", 1, {REL8}}, // 73 + {0, 0, "jz ", 1, {REL8}}, // 74 + {0, 0, "jne ", 1, {REL8}}, // 75 + {0, 0, "jbe ", 1, {REL8}}, // 76 + {0, 0, "ja ", 1, {REL8}}, // 77 + {0, 0, "js ", 1, {REL8}}, // 78 + {0, 0, "jns ", 1, {REL8}}, // 79 + {0, 0, "jp ", 1, {REL8}}, // 7A + {0, 0, "jnp ", 1, {REL8}}, // 7B + {0, 0, "jl ", 1, {REL8}}, // 7C + {0, 0, "jnl ", 1, {REL8}}, // 7D + {0, 0, "jle ", 1, {REL8}}, // 7E + {0, 0, "jnle ", 1, {REL8}}, // 7F + {1, BYTE, "add ", 2, {RM, IMM8}}, // 80 + {1, DWORD, "add ", 2, {RM, IMM32}}, // 81 + {0, 0, ".byte 0x82", 0}, // 82 + {1, DWORD, "adc ", 2, {RM, IMM8}}, // 83 + {1, BYTE, "test ", 2, {RM, R}}, // 84 + {1, DWORD, "test ", 2, {RM, R}}, // 85 + {1, BYTE, "xchg ", 2, {RM, R}}, // 86 + {1, DWORD, "xchg ", 2, {RM, R}}, // 87 + {1, BYTE, "mov ", 2, {RM, R}}, // 88 + {1, DWORD, "mov ", 2, {RM, R}}, // 89 + {1, BYTE, "mov ", 2, {R, RM}}, // 8A + {1, DWORD, "mov ", 2, {R, RM}}, // 8B + {1, WORD, "mov ", 2, {RM, SS}}, // 8C + {1, 0, "lea ", 2, {R, RM}}, // 8D + {1, WORD, "mov ss,", 1, {RM}}, // 8E + {1, DWORD, "pop ", 1, {RM}}, // 8F + {0, 0, "nop", 0}, // 90 + {0, 0, "xchg ecx,eax", 0}, // 91 + {0, 0, "xchg edx,eax", 0}, // 92 + {0, 0, "xchg ebx,eax", 0}, // 93 + {0, 0, "xchg esp,eax", 0}, // 94 + {0, 0, "xchg ebp,eax", 0}, // 95 + {0, 0, "xchg esi,eax", 0}, // 96 + {0, 0, "xchg edi,eax", 0}, // 97 + {0, 0, "cwde", 0}, // 98 + {0, 0, "cdq", 0}, // 99 + {0, 0, "call ", 1, {PTR1632}}, // 9A + {0, 0, "fwait", 0}, // 9B + {0, 0, "pushf", 0}, // 9C + {0, 0, "popf", 0}, // 9D + {0, 0, "sahf", 0}, // 9E + {0, 0, "lahf", 0}, // 9F + {0, 0, "mov al,ds:", 1, {IMM8}}, // A0 + {0, 0, "mov eax,ds:", 1, {IMM8}}, // A1 + {0, 0, "mov ds:", 2, {IMM8, AL}}, // A2 + {0, 0, "mov ds:", 2, {IMM32, EAX}}, // A3 + {0, 0, "movs BYTE PTR es:[edi],BYTE PTR ds:[esi]", 0}, // A4 + {0, 0, "movs DWORD PTR es:[edi],DWORD PTR ds:[esi]", 0}, // A5 + {0, 0, "cmps BYTE PTR es:[esi],BYTE PTR ds:[edi]", 0}, // A6 + {0, 0, "cmps DWORD PTR es:[esi],DWORD PTR ds:[edi]", 0}, // A7 + {0, 0, "test al,", 1, {IMM8}}, // A8 + {0, 0, "test eax,", 1, {IMM32}}, // A9 + {0, 0, "stos BYTE PTR es:[edi],al", 0}, // AA + {0, 0, "stos DWORD PTR es:[edi],eax", 0}, // AB + {0, 0, "lods al,BYTE PTR ds:[esi]", 0}, // AC + {0, 0, "lods eax,DWORD PTR ds:[esi]", 0}, // AD + {0, 0, "scas al,BYTE PTR es:[edi]", 0}, // AE + {0, 0, "scas eax,DWORD PTR es:[edi]", 0}, // AF + {0, 0, "mov al,", 1, {IMM8}}, // B0 + {0, 0, "mov cl,", 1, {IMM8}}, // B1 + {0, 0, "mov dl,", 1, {IMM8}}, // B2 + {0, 0, "mov bl,", 1, {IMM8}}, // B3 + {0, 0, "mov ah,", 1, {IMM8}}, // B4 + {0, 0, "mov ch,", 1, {IMM8}}, // B5 + {0, 0, "mov dh,", 1, {IMM8}}, // B6 + {0, 0, "mov bh,", 1, {IMM8}}, // B7 + {0, 0, "mov eax,", 1, {IMM32}}, // B8 + {0, 0, "mov ecx,", 1, {IMM32}}, // B9 + {0, 0, "mov edx,", 1, {IMM32}}, // BA + {0, 0, "mov ebx,", 1, {IMM32}}, // BB + {0, 0, "mov esp,", 1, {IMM32}}, // BC + {0, 0, "mov ebp,", 1, {IMM32}}, // BD + {0, 0, "mov esi,", 1, {IMM32}}, // BE + {0, 0, "mov edi,", 1, {IMM32}}, // BF + {1, BYTE, "rol ", 2, {RM, IMM8}}, // C0 + {1, DWORD, "rol ", 2, {RM, IMM8}}, // C1 + {0, 0, "ret ", 1, {IMM16}}, // C2 + {0, 0, "ret", 0}, // C3 + {1, FWORD, "les eax,", 1, {RM}}, // C4 + {1, FWORD, "lds eax,", 1, {RM}}, // C5 + {1, BYTE, "mov ", 2, {RM, IMM8}}, // C6 + {1, DWORD, "mov ", 2, {RM, IMM32}}, // C7 + {0, 0, "enter ", 2, {IMM16, IMM8}}, // C8 + {0, 0, "leave", 0}, // C9 + {0, 0, "retf ", 1, {IMM16}}, // CA + {0, 0, "retf", 0}, // CB + {0, 0, "int3", 0}, // CC + {0, 0, "int ", 1, {IMM8}}, // CD + {0, 0, "into", 0}, // CE + {0, 0, "iret", 0}, // CF + {1, BYTE, "rol ", 2, {RM, ONE}}, // D0 + {1, DWORD, "rol ", 2, {RM, ONE}}, // D1 + {1, BYTE, "rol ", 2, {RM, CL}}, // D2 + {1, DWORD, "rol ", 2, {RM, CL}}, // D3 + {0, 0, "aam ", 1, {IMM8}}, // D4 + {0, 0, "aad ", 1, {IMM8}}, // D5 + {0, 0, ".byte 0xd6", 0}, // D6 + {0, 0, "xlat BYTE PTR ds:[ebx]", 0}, // D7 + {1, DWORD, "fadd ", 1, {RM}}, // D8 + {1, DWORD, "fld ", 1, {RM}}, // D9 + {1, DWORD, "fiadd ", 1, {RM}}, // DA + {1, DWORD, "fild ", 1, {RM}}, // DB + {1, QWORD, "fadd ", 1, {RM}}, // DC + {1, QWORD, "fld ", 1, {RM}}, // DD + {1, WORD, "fiadd ", 1, {RM}}, // DE + {1, WORD, "fild ", 1, {RM}}, // DF + {0, 0, "loopne ", 1, {REL8}}, // E0 + {0, 0, "loope ", 1, {REL8}}, // E1 + {0, 0, "loop ", 1, {REL8}}, // E2 + {0, 0, "jecxz ", 1, {REL8}}, // E3 + {0, 0, "in al,", 1, {IMM8}}, // E4 + {0, 0, "in eax,", 1, {IMM8}}, // E5 + {0, 0, "out ", 2, {IMM8, AL}}, // E6 + {0, 0, "out ", 2, {IMM8, EAX}}, // E7 + {0, 0, "call ", 1, {REL32}}, // E8 + {0, 0, "jmp ", 1, {REL32}}, // E9 + {0, 0, "jmpf ", 1, {PTR1632}}, // EA + {0, 0, "jmp ", 1, {REL8}}, // EB + {0, 0, "in al,dx", 0}, // EC + {0, 0, "in eax,dx", 0}, // ED + {0, 0, "out dx,al", 0}, // EE + {0, 0, "out dx,eax", 0}, // EF + {0, 0, "lock ", 0}, // F0 + {0, 0, "icebp", 0}, // F1 + {0, 0, "repnz ", 0}, // F2 + {0, 0, "repz", 0}, // F3 + {0, 0, "hlt", 0}, // F4 + {0, 0, "cmc", 0}, // F5 + {1, BYTE, "test ", 2, {RM, IMM8}}, // F6 + {1, DWORD, "test ", 2, {RM, IMM32}}, // F7 + {0, 0, "clc", 0}, // F8 + {0, 0, "stc", 0}, // F9 + {0, 0, "cli", 0}, // FA + {0, 0, "sti", 0}, // FB + {0, 0, "cld", 0}, // FC + {0, 0, "std", 0}, // FD + {1, BYTE, "inc ", 1, {RM}}, // FE + {1, DWORD, "inc ", 1, {RM}} // FF + }; - static INSTRUCTION extended_instructions[] = { - { 1, WORD, "sldt ", 1, {RM} }, // 0 - { 1, 0, "sgdtd ", 1, {RM} }, // 1 - { 1, 0, "lar eax,WORD PTR ", 1, {RM} }, // 2 - { 1, 0, "lsl eax,WORD PTR ", 1, {RM} }, // 3 - { 0, 0, ".word 0x0f04", 0 }, // 4 - { 0, 0, "syscall", 0 }, // 5 - { 0, 0, "clts", 0 }, // 6 - { 0, 0, "sysret", 0 }, // 7 - { 0, 0, "invd", 0 }, // 8 - { 0, 0, "wbinvd", 0 }, // 9 - { 0, 0, ".word 0x0f0a", 0 }, // A - { 0, 0, "ud2", 0 }, // B - { 0, 0, ".word 0x0f0c", 0 }, // C - { 1, BYTE, "prefetch ", 1, {RM} }, // D - { 0, 0, "femms", 0 }, // E - { 0 }, // F - Illegal - { 1, XMMWORD, "movups xmm0,", 1, {RM} }, // 10 - { 1, XMMWORD, "movups ", 2, {RM, XMM0} }, // 11 - { 1, QWORD, "movlps xmm0,", 1, {RM} }, // 12 - { 1, QWORD, "movlps ", 2, {RM, XMM0} }, // 13 - { 1, XMMWORD, "unpcklps xmm0,", 1, {RM} }, // 14 - { 1, XMMWORD, "unpckhps xmm0,", 1, {RM} }, // 15 - { 1, QWORD, "movhps xmm0,", 1, {RM} }, // 16 - { 1, QWORD, "movhps ", 2, {RM, XMM0} }, // 17 - { 1, BYTE, "prefetchnta ", 1, {RM} }, // 18 - { 1, DWORD, "nop ", 1, {RM} }, // 19 - { 1, 0, "bndldx bnd0,", 1, {RM} }, // 1A - { 1, 0, "bndstx ", 2, {RM, BND0} }, // 1B - { 1, DWORD, "nop ", 1, {RM} }, // 1C - { 1, DWORD, "nop ", 1, {RM} }, // 1D - { 1, DWORD, "nop ", 1, {RM} }, // 1E - { 1, DWORD, "nop ", 1, {RM} }, // 1F - { 0, 0, ".word 0x0f20", 0 }, // 20 - { 0, 0, ".word 0x0f21", 0 }, // 21 - { 0, 0, ".word 0x0f22", 0 }, // 22 - { 0, 0, ".word 0x0f23", 0 }, // 23 - { 0, 0, ".word 0x0f24", 0 }, // 24 - { 0, 0, ".word 0x0f25", 0 }, // 25 - { 0, 0, ".word 0x0f26", 0 }, // 26 - { 0, 0, ".word 0x0f27", 0 }, // 27 - { 1, XMMWORD, "movaps xmm0,", 1, {RM} }, // 28 - { 1, XMMWORD, "movaps ", 2, {RM, XMM0} }, // 29 - { 1, QWORD, "cvtpi2ps xmm0,", 1, {RM} }, // 2A - { 1, XMMWORD, "movntps ", 2, {RM, XMM0} }, // 2B - { 1, QWORD, "cvttps2pi mm0,", 1, {RM} }, // 2C - { 1, QWORD, "cvtps2pi mm0,", 1, {RM} }, // 2D - { 1, DWORD, "ucomiss xmm0,", 1, {RM} }, // 2E - { 1, DWORD, "comiss xmm0,", 1, {RM} }, // 2F - { 0, 0, "wrmsr", 0 }, // 30 - { 0, 0, "rdtsc", 0 }, // 31 - { 0, 0, "rdmsr", 0 }, // 32 - { 0, 0, "rdpmc", 0 }, // 33 - { 0, 0, "sysenter", 0 }, // 34 - { 0, 0, "sysexit", 0 }, // 35 - { 0, 0, ".word 0x0f36", 0 }, // 36 - { 0, 0, "getsec", 0 }, // 37 - { 1, QWORD, "pshufb mm0,", 1, {RM} }, // 38 - { 0, 0, ".word 0x0f39", 0 }, // 39 - { 0, 0, "(bad)", 1, {(BAD)} }, // 3A - { 0, 0, ".word 0x0f3b", 0 }, // 3B - { 0, 0, ".word 0x0f3c", 0 }, // 3C - { 0, 0, ".word 0x0f3d", 0 }, // 3D - { 0, 0, ".word 0x0f3e", 0 }, // 3E - { 0, 0, ".word 0x0f3f", 0 }, // 3F - { 1, DWORD, "cmovo ", 2, {R, RM} }, // 40 - { 1, DWORD, "cmovno ", 2, {R, RM} }, // 41 - { 1, DWORD, "cmovb ", 2, {R, RM} }, // 42 - { 1, DWORD, "cmovae ", 2, {R, RM} }, // 43 - { 1, DWORD, "cmove ", 2, {R, RM} }, // 44 - { 1, DWORD, "cmovne ", 2, {R, RM} }, // 45 - { 1, DWORD, "cmovbe ", 2, {R, RM} }, // 46 - { 1, DWORD, "cmova ", 2, {R, RM} }, // 47 - { 1, DWORD, "cmovs ", 2, {R, RM} }, // 48 - { 1, DWORD, "cmovns ", 2, {R, RM} }, // 49 - { 1, DWORD, "cmovp ", 2, {R, RM} }, // 4A - { 1, DWORD, "cmovnp ", 2, {R, RM} }, // 4B - { 1, DWORD, "cmovl ", 2, {R, RM} }, // 4C - { 1, DWORD, "cmovge ", 2, {R, RM} }, // 4D - { 1, DWORD, "cmovle ", 2, {R, RM} }, // 4E - { 1, DWORD, "cmovg ", 2, {R, RM} }, // 4F - { 0, 0, ".word 0x0f50", 0 }, // 50 - { 1, XMMWORD, "sqrtps xmm0,", 1, {RM} }, // 51 - { 1, XMMWORD, "rsqrtps xmm0,", 1, {RM} }, // 52 - { 1, XMMWORD, "rcpps xmm0,", 1, {RM} }, // 53 - { 1, XMMWORD, "andps xmm0,", 1, {RM} }, // 54 - { 1, XMMWORD, "andnps xmm0,", 1, {RM} }, // 55 - { 1, XMMWORD, "orps xmm0,", 1, {RM} }, // 56 - { 1, XMMWORD, "xorps xmm0,", 1, {RM} }, // 57 - { 1, XMMWORD, "addps xmm0,", 1, {RM} }, // 58 - { 1, XMMWORD, "mulps xmm0,", 1, {RM} }, // 59 - { 1, QWORD, "cvtps2pd xmm0,", 1, {RM} }, // 5A - { 1, XMMWORD, "cvtdp2ps xmm0,", 1, {RM} }, // 5B - { 1, XMMWORD, "subps xmm0,", 1, {RM} }, // 5C - { 1, XMMWORD, "minps xmm0,", 1, {RM} }, // 5D - { 1, XMMWORD, "divps xmm0,", 1, {RM} }, // 5E - { 1, XMMWORD, "maxps xmm0,", 1, {RM} }, // 5F - { 1, DWORD, "punpcklbw mm0,", 1, {RM} }, // 60 - { 1, DWORD, "punpcklwd mm0,", 1, {RM} }, // 61 - { 1, DWORD, "punpckldq mm0,", 1, {RM} }, // 62 - { 1, QWORD, "packsswb mm0,", 1, {RM} }, // 63 - { 1, QWORD, "pcmpgtb mm0,", 1, {RM} }, // 64 - { 1, QWORD, "pcmpgtw mm0,", 1, {RM} }, // 65 - { 1, QWORD, "pcmpgtd mm0,", 1, {RM} }, // 66 - { 1, QWORD, "packuswb mm0,", 1, {RM} }, // 67 - { 1, QWORD, "punpckhbw mm0,", 1, {RM} }, // 68 - { 1, QWORD, "punpckhwd mm0,", 1, {RM} }, // 69 - { 1, QWORD, "punpckhdq mm0,", 1, {RM} }, // 6A - { 1, QWORD, "packssdw mm0,", 1, {RM} }, // 6B - { 0, 0, ".word 0x0f6c", 0 }, // 6C - { 0, 0, ".word 0x0f6d", 0 }, // 6D - { 1, DWORD, "movd mm0,", 1, {RM} }, // 6E - { 1, QWORD, "movq mm0,", 1, {RM} }, // 6F - { 1, QWORD, "pshufw mm0,", 2, {RM, IMM8} }, // 70 - { 0, 0, ".word 0x0f71", 0 }, // 71 - { 0, 0, ".word 0x0f72", 0 }, // 72 - { 0, 0, ".word 0x0f73", 0 }, // 73 - { 1, QWORD, "pcmpeqb mm0,", 1, {RM} }, // 74 - { 1, QWORD, "pcmpeqw mm0,", 1, {RM} }, // 75 - { 1, QWORD, "pcmpeqd mm0,", 1, {RM} }, // 76 - { 0, 0, "emms", 0 }, // 77 - { 1, DWORD, "vmread ", 2, {RM, R} }, // 78 - { 1, DWORD, "vmwrite ", 2, {R, RM} }, // 79 - { 0, 0, "(bad)", 1, {BAD} }, // 7A - { 0, 0, ".word 0x0f7b", 0 }, // 7B - { 0, 0, ".word 0x0f7c", 0 }, // 7C - { 0, 0, ".word 0x0f7d", 0 }, // 7D - { 1, DWORD, "movd ", 2, {RM, MM0} }, // 7E - { 1, QWORD, "movq ", 2, {RM, MM0} }, // 7F - { 0, 0, "jo ", 1, {REL32} }, // 80 - { 0, 0, "jno ", 1, {REL32} }, // 81 - { 0, 0, "jb ", 1, {REL32} }, // 82 - { 0, 0, "jae ", 1, {REL32} }, // 83 - { 0, 0, "je ", 1, {REL32} }, // 84 - { 0, 0, "jne ", 1, {REL32} }, // 85 - { 0, 0, "jbe ", 1, {REL32} }, // 86 - { 0, 0, "ja ", 1, {REL32} }, // 87 - { 0, 0, "js ", 1, {REL32} }, // 88 - { 0, 0, "jns ", 1, {REL32} }, // 89 - { 0, 0, "jp ", 1, {REL32} }, // 8A - { 0, 0, "jnp ", 1, {REL32} }, // 8B - { 0, 0, "jl ", 1, {REL32} }, // 8C - { 0, 0, "jge ", 1, {REL32} }, // 8D - { 0, 0, "jle ", 1, {REL32} }, // 8E - { 0, 0, "jg ", 1, {REL32} }, // 8F - { 1, BYTE, "seto ", 1, {RM} }, // 90 - { 1, BYTE, "setno ", 1, {RM} }, // 91 - { 1, BYTE, "setb ", 1, {RM} }, // 92 - { 1, BYTE, "setae ", 1, {RM} }, // 93 - { 1, BYTE, "sete ", 1, {RM} }, // 94 - { 1, BYTE, "setne ", 1, {RM} }, // 95 - { 1, BYTE, "setbe ", 1, {RM} }, // 96 - { 1, BYTE, "seta ", 1, {RM} }, // 97 - { 1, BYTE, "sets ", 1, {RM} }, // 98 - { 1, BYTE, "setns ", 1, {RM} }, // 99 - { 1, BYTE, "setp ", 1, {RM} }, // 9A - { 1, BYTE, "setnp ", 1, {RM} }, // 9B - { 1, BYTE, "setl ", 1, {RM} }, // 9C - { 1, BYTE, "setge ", 1, {RM} }, // 9D - { 1, BYTE, "setle ", 1, {RM} }, // 9E - { 1, BYTE, "setg ", 1, {RM} }, // 9F - { 0, 0, "push fs", 0 }, // A0 - { 0, 0, "pop fs", 0 }, // A1 - { 0, 0, "cpuid", 0 }, // A2 - { 1, DWORD, "bt ", 2, {RM, R} }, // A3 - { 1, DWORD, "shld ", 3, {RM, R, IMM8} }, // A4 - { 1, DWORD, "shld ", 3, {RM, R, CL} }, // A5 - { 0 }, // A6 - Illegal - { 0 }, // A7 - Illegal - { 0, 0, "push gs", 0 }, // A8 - { 0, 0, "pop gs", 0 }, // A9 - { 0, 0, "rsm", 0 }, // AA - { 1, DWORD, "bts ", 2, {RM, R} }, // AB - { 1, DWORD, "shrd ", 3, {RM, R, IMM8} }, // AC - { 1, DWORD, "shrd ", 3, {RM, R, CL} }, // AD - { 1, 0, "fxsave ", 1, {RM} }, // AE - { 1, DWORD, "imul ", 2, {R, RM} }, // AF - { 1, BYTE, "cmpxchg ", 2, {RM, AL} }, // B0 - { 1, DWORD, "cmpxchg ", 2, {RM, R} }, // B1 - { 1, FWORD, "lss ", 2, {R, RM} }, // B2 - { 1, DWORD, "btr ", 2, {RM, R} }, // B3 - { 1, FWORD, "lfs ", 2, {R, RM} }, // B4 - { 1, FWORD, "lgs ", 2, {R, RM} }, // B5 - { 1, BYTE, "movzx ", 2, {R, RM} }, // B6 - { 1, WORD, "movzx ", 2, {R, RM} }, // B7 - { 0, 0, ".word 0x0fb8", 0 }, // B8 - { 0, 0, "ud1", 0 }, // B9 - { 0, 0, ".word 0x0fba", 0 }, // BA - { 1, DWORD, "btc ", 2, {RM, R} }, // BB - { 1, DWORD, "bsf ", 2, {R, RM} }, // BC - { 1, DWORD, "bsr ", 2, {R, RM} }, // BD - { 1, BYTE, "movsx ", 2, {R, RM} }, // BE - { 1, WORD, "movsx ", 2, {R, RM} }, // BF - { 1, BYTE, "xadd ", 2, {RM, R} }, // C0 - { 1, DWORD, "xadd ", 2, {RM, R} }, // C1 - { 1, XMMWORD, "cmpeqps xmm0,", 1, {RM} }, // C2 - { 1, QWORD, "movnti ", 2, {RM, R} }, // C3 - { 1, WORD, "pinsrw mm0,", 2, {RM, IMM8} }, // C4 - { 1, 0, "pextrw ", 3, {R, MM0, IMM8} }, // C5 - { 1, XMMWORD, "shufps xmm0,", 2, {RM, IMM8} }, // C6 - { 0, 0, ".word 0x0fc7", 0 }, // C7 - { 0, 0, "bswap eax", 0 }, // C8 - { 0, 0, "bswap ecx", 0 }, // C9 - { 0, 0, "bswap edx", 0 }, // CA - { 0, 0, "bswap ebx", 0 }, // CB - { 0, 0, "bswap esp", 0 }, // CC - { 0, 0, "bswap ebp", 0 }, // CD - { 0, 0, "bswap esi", 0 }, // CE - { 0, 0, "bswap edi", 0 }, // CF - { 0, 0, ".word 0x0fd0", 0 }, // D0 - { 1, QWORD, "psrlw mm0,", 1, {RM} }, // D1 - { 1, QWORD, "psrld mm0,", 1, {RM} }, // D2 - { 1, QWORD, "psrlq mm0,", 1, {RM} }, // D3 - { 1, QWORD, "paddq mm0,", 1, {RM} }, // D4 - { 1, QWORD, "pmullw mm0,", 1, {RM} }, // D5 - { 0, 0, ".word 0x0fd6,", 0 }, // D6 - { 0, 0, ".word 0x0fd7,", 0 }, // D7 - { 1, QWORD, "psubusb mm0,", 1, {RM} }, // D8 - { 1, QWORD, "psubusw mm0,", 1, {RM} }, // D9 - { 1, QWORD, "pminub mm0,", 1, {RM} }, // DA - { 1, QWORD, "pand mm0,", 1, {RM} }, // DB - { 1, QWORD, "paddusb mm0,", 1, {RM} }, // DC - { 1, QWORD, "psubusw mm0,", 1, {RM} }, // DD - { 1, QWORD, "pmaxub mm0,", 1, {RM} }, // DE - { 1, QWORD, "pandn mm0,", 1, {RM} }, // DF - { 1, QWORD, "pavgb mm0,", 1, {RM} }, // E0 - { 1, QWORD, "psraw mm0,", 1, {RM} }, // E1 - { 1, QWORD, "psrad mm0,", 1, {RM} }, // E2 - { 1, QWORD, "pavgw mm0,", 1, {RM} }, // E3 - { 1, QWORD, "pmulhuw mm0,", 1, {RM} }, // E4 - { 1, QWORD, "pmulhw mm0,", 1, {RM} }, // E5 - { 0, 0, ".word 0x0fe6", 0 }, // E6 - { 1, QWORD, "movntq ", 2, {RM, MM0} }, // E7 - { 1, QWORD, "psubsb mm0,", 1, {RM} }, // E8 - { 1, QWORD, "psubsw mm0,", 1, {RM} }, // E9 - { 1, QWORD, "pminsw mm0,", 1, {RM} }, // EA - { 1, QWORD, "por mm0,", 1, {RM} }, // EB - { 1, QWORD, "paddsb mm0,", 1, {RM} }, // EC - { 1, QWORD, "paddsw mm0,", 1, {RM} }, // ED - { 1, QWORD, "pmaxsw mm0,", 1, {RM} }, // EE - { 1, QWORD, "pxor mm0,", 1, {RM} }, // EF - { 0, 0, ".word 0x0ff0", 0 }, // F0 - { 1, QWORD, "psllow mm0,", 1, {RM} }, // F1 - { 1, QWORD, "pslld mm0,", 1, {RM} }, // F2 - { 1, QWORD, "psllq mm0,", 1, {RM} }, // F3 - { 1, QWORD, "pmuludq mm0,", 1, {RM} }, // F4 - { 1, QWORD, "pmaddwd mm0,", 1, {RM} }, // F5 - { 1, QWORD, "psadbw mm0,", 1, {RM} }, // F6 - { 0 }, // F7 - Illegal - { 1, QWORD, "psubb mm0,", 1, {RM} }, // F8 - { 1, QWORD, "psubw mm0,", 1, {RM} }, // F9 - { 1, QWORD, "psubd mm0,", 1, {RM} }, // FA - { 1, QWORD, "psubq mm0,", 1, {RM} }, // FB - { 1, QWORD, "paddb mm0,", 1, {RM} }, // FC - { 1, QWORD, "paddw mm0,", 1, {RM} }, // FD - { 1, QWORD, "paddd mm0,", 1, {RM} }, // FE - { 0 }, // FF - Illegal - }; + static INSTRUCTION extended_instructions[] = { + {1, WORD, "sldt ", 1, {RM}}, // 0 + {1, 0, "sgdtd ", 1, {RM}}, // 1 + {1, 0, "lar eax,WORD PTR ", 1, {RM}}, // 2 + {1, 0, "lsl eax,WORD PTR ", 1, {RM}}, // 3 + {0, 0, ".word 0x0f04", 0}, // 4 + {0, 0, "syscall", 0}, // 5 + {0, 0, "clts", 0}, // 6 + {0, 0, "sysret", 0}, // 7 + {0, 0, "invd", 0}, // 8 + {0, 0, "wbinvd", 0}, // 9 + {0, 0, ".word 0x0f0a", 0}, // A + {0, 0, "ud2", 0}, // B + {0, 0, ".word 0x0f0c", 0}, // C + {1, BYTE, "prefetch ", 1, {RM}}, // D + {0, 0, "femms", 0}, // E + {0}, // F - Illegal + {1, XMMWORD, "movups xmm0,", 1, {RM}}, // 10 + {1, XMMWORD, "movups ", 2, {RM, XMM0}}, // 11 + {1, QWORD, "movlps xmm0,", 1, {RM}}, // 12 + {1, QWORD, "movlps ", 2, {RM, XMM0}}, // 13 + {1, XMMWORD, "unpcklps xmm0,", 1, {RM}}, // 14 + {1, XMMWORD, "unpckhps xmm0,", 1, {RM}}, // 15 + {1, QWORD, "movhps xmm0,", 1, {RM}}, // 16 + {1, QWORD, "movhps ", 2, {RM, XMM0}}, // 17 + {1, BYTE, "prefetchnta ", 1, {RM}}, // 18 + {1, DWORD, "nop ", 1, {RM}}, // 19 + {1, 0, "bndldx bnd0,", 1, {RM}}, // 1A + {1, 0, "bndstx ", 2, {RM, BND0}}, // 1B + {1, DWORD, "nop ", 1, {RM}}, // 1C + {1, DWORD, "nop ", 1, {RM}}, // 1D + {1, DWORD, "nop ", 1, {RM}}, // 1E + {1, DWORD, "nop ", 1, {RM}}, // 1F + {0, 0, ".word 0x0f20", 0}, // 20 + {0, 0, ".word 0x0f21", 0}, // 21 + {0, 0, ".word 0x0f22", 0}, // 22 + {0, 0, ".word 0x0f23", 0}, // 23 + {0, 0, ".word 0x0f24", 0}, // 24 + {0, 0, ".word 0x0f25", 0}, // 25 + {0, 0, ".word 0x0f26", 0}, // 26 + {0, 0, ".word 0x0f27", 0}, // 27 + {1, XMMWORD, "movaps xmm0,", 1, {RM}}, // 28 + {1, XMMWORD, "movaps ", 2, {RM, XMM0}}, // 29 + {1, QWORD, "cvtpi2ps xmm0,", 1, {RM}}, // 2A + {1, XMMWORD, "movntps ", 2, {RM, XMM0}}, // 2B + {1, QWORD, "cvttps2pi mm0,", 1, {RM}}, // 2C + {1, QWORD, "cvtps2pi mm0,", 1, {RM}}, // 2D + {1, DWORD, "ucomiss xmm0,", 1, {RM}}, // 2E + {1, DWORD, "comiss xmm0,", 1, {RM}}, // 2F + {0, 0, "wrmsr", 0}, // 30 + {0, 0, "rdtsc", 0}, // 31 + {0, 0, "rdmsr", 0}, // 32 + {0, 0, "rdpmc", 0}, // 33 + {0, 0, "sysenter", 0}, // 34 + {0, 0, "sysexit", 0}, // 35 + {0, 0, ".word 0x0f36", 0}, // 36 + {0, 0, "getsec", 0}, // 37 + {1, QWORD, "pshufb mm0,", 1, {RM}}, // 38 + {0, 0, ".word 0x0f39", 0}, // 39 + {0, 0, "(bad)", 1, {(BAD)}}, // 3A + {0, 0, ".word 0x0f3b", 0}, // 3B + {0, 0, ".word 0x0f3c", 0}, // 3C + {0, 0, ".word 0x0f3d", 0}, // 3D + {0, 0, ".word 0x0f3e", 0}, // 3E + {0, 0, ".word 0x0f3f", 0}, // 3F + {1, DWORD, "cmovo ", 2, {R, RM}}, // 40 + {1, DWORD, "cmovno ", 2, {R, RM}}, // 41 + {1, DWORD, "cmovb ", 2, {R, RM}}, // 42 + {1, DWORD, "cmovae ", 2, {R, RM}}, // 43 + {1, DWORD, "cmove ", 2, {R, RM}}, // 44 + {1, DWORD, "cmovne ", 2, {R, RM}}, // 45 + {1, DWORD, "cmovbe ", 2, {R, RM}}, // 46 + {1, DWORD, "cmova ", 2, {R, RM}}, // 47 + {1, DWORD, "cmovs ", 2, {R, RM}}, // 48 + {1, DWORD, "cmovns ", 2, {R, RM}}, // 49 + {1, DWORD, "cmovp ", 2, {R, RM}}, // 4A + {1, DWORD, "cmovnp ", 2, {R, RM}}, // 4B + {1, DWORD, "cmovl ", 2, {R, RM}}, // 4C + {1, DWORD, "cmovge ", 2, {R, RM}}, // 4D + {1, DWORD, "cmovle ", 2, {R, RM}}, // 4E + {1, DWORD, "cmovg ", 2, {R, RM}}, // 4F + {0, 0, ".word 0x0f50", 0}, // 50 + {1, XMMWORD, "sqrtps xmm0,", 1, {RM}}, // 51 + {1, XMMWORD, "rsqrtps xmm0,", 1, {RM}}, // 52 + {1, XMMWORD, "rcpps xmm0,", 1, {RM}}, // 53 + {1, XMMWORD, "andps xmm0,", 1, {RM}}, // 54 + {1, XMMWORD, "andnps xmm0,", 1, {RM}}, // 55 + {1, XMMWORD, "orps xmm0,", 1, {RM}}, // 56 + {1, XMMWORD, "xorps xmm0,", 1, {RM}}, // 57 + {1, XMMWORD, "addps xmm0,", 1, {RM}}, // 58 + {1, XMMWORD, "mulps xmm0,", 1, {RM}}, // 59 + {1, QWORD, "cvtps2pd xmm0,", 1, {RM}}, // 5A + {1, XMMWORD, "cvtdp2ps xmm0,", 1, {RM}}, // 5B + {1, XMMWORD, "subps xmm0,", 1, {RM}}, // 5C + {1, XMMWORD, "minps xmm0,", 1, {RM}}, // 5D + {1, XMMWORD, "divps xmm0,", 1, {RM}}, // 5E + {1, XMMWORD, "maxps xmm0,", 1, {RM}}, // 5F + {1, DWORD, "punpcklbw mm0,", 1, {RM}}, // 60 + {1, DWORD, "punpcklwd mm0,", 1, {RM}}, // 61 + {1, DWORD, "punpckldq mm0,", 1, {RM}}, // 62 + {1, QWORD, "packsswb mm0,", 1, {RM}}, // 63 + {1, QWORD, "pcmpgtb mm0,", 1, {RM}}, // 64 + {1, QWORD, "pcmpgtw mm0,", 1, {RM}}, // 65 + {1, QWORD, "pcmpgtd mm0,", 1, {RM}}, // 66 + {1, QWORD, "packuswb mm0,", 1, {RM}}, // 67 + {1, QWORD, "punpckhbw mm0,", 1, {RM}}, // 68 + {1, QWORD, "punpckhwd mm0,", 1, {RM}}, // 69 + {1, QWORD, "punpckhdq mm0,", 1, {RM}}, // 6A + {1, QWORD, "packssdw mm0,", 1, {RM}}, // 6B + {0, 0, ".word 0x0f6c", 0}, // 6C + {0, 0, ".word 0x0f6d", 0}, // 6D + {1, DWORD, "movd mm0,", 1, {RM}}, // 6E + {1, QWORD, "movq mm0,", 1, {RM}}, // 6F + {1, QWORD, "pshufw mm0,", 2, {RM, IMM8}}, // 70 + {0, 0, ".word 0x0f71", 0}, // 71 + {0, 0, ".word 0x0f72", 0}, // 72 + {0, 0, ".word 0x0f73", 0}, // 73 + {1, QWORD, "pcmpeqb mm0,", 1, {RM}}, // 74 + {1, QWORD, "pcmpeqw mm0,", 1, {RM}}, // 75 + {1, QWORD, "pcmpeqd mm0,", 1, {RM}}, // 76 + {0, 0, "emms", 0}, // 77 + {1, DWORD, "vmread ", 2, {RM, R}}, // 78 + {1, DWORD, "vmwrite ", 2, {R, RM}}, // 79 + {0, 0, "(bad)", 1, {BAD}}, // 7A + {0, 0, ".word 0x0f7b", 0}, // 7B + {0, 0, ".word 0x0f7c", 0}, // 7C + {0, 0, ".word 0x0f7d", 0}, // 7D + {1, DWORD, "movd ", 2, {RM, MM0}}, // 7E + {1, QWORD, "movq ", 2, {RM, MM0}}, // 7F + {0, 0, "jo ", 1, {REL32}}, // 80 + {0, 0, "jno ", 1, {REL32}}, // 81 + {0, 0, "jb ", 1, {REL32}}, // 82 + {0, 0, "jae ", 1, {REL32}}, // 83 + {0, 0, "je ", 1, {REL32}}, // 84 + {0, 0, "jne ", 1, {REL32}}, // 85 + {0, 0, "jbe ", 1, {REL32}}, // 86 + {0, 0, "ja ", 1, {REL32}}, // 87 + {0, 0, "js ", 1, {REL32}}, // 88 + {0, 0, "jns ", 1, {REL32}}, // 89 + {0, 0, "jp ", 1, {REL32}}, // 8A + {0, 0, "jnp ", 1, {REL32}}, // 8B + {0, 0, "jl ", 1, {REL32}}, // 8C + {0, 0, "jge ", 1, {REL32}}, // 8D + {0, 0, "jle ", 1, {REL32}}, // 8E + {0, 0, "jg ", 1, {REL32}}, // 8F + {1, BYTE, "seto ", 1, {RM}}, // 90 + {1, BYTE, "setno ", 1, {RM}}, // 91 + {1, BYTE, "setb ", 1, {RM}}, // 92 + {1, BYTE, "setae ", 1, {RM}}, // 93 + {1, BYTE, "sete ", 1, {RM}}, // 94 + {1, BYTE, "setne ", 1, {RM}}, // 95 + {1, BYTE, "setbe ", 1, {RM}}, // 96 + {1, BYTE, "seta ", 1, {RM}}, // 97 + {1, BYTE, "sets ", 1, {RM}}, // 98 + {1, BYTE, "setns ", 1, {RM}}, // 99 + {1, BYTE, "setp ", 1, {RM}}, // 9A + {1, BYTE, "setnp ", 1, {RM}}, // 9B + {1, BYTE, "setl ", 1, {RM}}, // 9C + {1, BYTE, "setge ", 1, {RM}}, // 9D + {1, BYTE, "setle ", 1, {RM}}, // 9E + {1, BYTE, "setg ", 1, {RM}}, // 9F + {0, 0, "push fs", 0}, // A0 + {0, 0, "pop fs", 0}, // A1 + {0, 0, "cpuid", 0}, // A2 + {1, DWORD, "bt ", 2, {RM, R}}, // A3 + {1, DWORD, "shld ", 3, {RM, R, IMM8}}, // A4 + {1, DWORD, "shld ", 3, {RM, R, CL}}, // A5 + {0}, // A6 - Illegal + {0}, // A7 - Illegal + {0, 0, "push gs", 0}, // A8 + {0, 0, "pop gs", 0}, // A9 + {0, 0, "rsm", 0}, // AA + {1, DWORD, "bts ", 2, {RM, R}}, // AB + {1, DWORD, "shrd ", 3, {RM, R, IMM8}}, // AC + {1, DWORD, "shrd ", 3, {RM, R, CL}}, // AD + {1, 0, "fxsave ", 1, {RM}}, // AE + {1, DWORD, "imul ", 2, {R, RM}}, // AF + {1, BYTE, "cmpxchg ", 2, {RM, AL}}, // B0 + {1, DWORD, "cmpxchg ", 2, {RM, R}}, // B1 + {1, FWORD, "lss ", 2, {R, RM}}, // B2 + {1, DWORD, "btr ", 2, {RM, R}}, // B3 + {1, FWORD, "lfs ", 2, {R, RM}}, // B4 + {1, FWORD, "lgs ", 2, {R, RM}}, // B5 + {1, BYTE, "movzx ", 2, {R, RM}}, // B6 + {1, WORD, "movzx ", 2, {R, RM}}, // B7 + {0, 0, ".word 0x0fb8", 0}, // B8 + {0, 0, "ud1", 0}, // B9 + {0, 0, ".word 0x0fba", 0}, // BA + {1, DWORD, "btc ", 2, {RM, R}}, // BB + {1, DWORD, "bsf ", 2, {R, RM}}, // BC + {1, DWORD, "bsr ", 2, {R, RM}}, // BD + {1, BYTE, "movsx ", 2, {R, RM}}, // BE + {1, WORD, "movsx ", 2, {R, RM}}, // BF + {1, BYTE, "xadd ", 2, {RM, R}}, // C0 + {1, DWORD, "xadd ", 2, {RM, R}}, // C1 + {1, XMMWORD, "cmpeqps xmm0,", 1, {RM}}, // C2 + {1, QWORD, "movnti ", 2, {RM, R}}, // C3 + {1, WORD, "pinsrw mm0,", 2, {RM, IMM8}}, // C4 + {1, 0, "pextrw ", 3, {R, MM0, IMM8}}, // C5 + {1, XMMWORD, "shufps xmm0,", 2, {RM, IMM8}}, // C6 + {0, 0, ".word 0x0fc7", 0}, // C7 + {0, 0, "bswap eax", 0}, // C8 + {0, 0, "bswap ecx", 0}, // C9 + {0, 0, "bswap edx", 0}, // CA + {0, 0, "bswap ebx", 0}, // CB + {0, 0, "bswap esp", 0}, // CC + {0, 0, "bswap ebp", 0}, // CD + {0, 0, "bswap esi", 0}, // CE + {0, 0, "bswap edi", 0}, // CF + {0, 0, ".word 0x0fd0", 0}, // D0 + {1, QWORD, "psrlw mm0,", 1, {RM}}, // D1 + {1, QWORD, "psrld mm0,", 1, {RM}}, // D2 + {1, QWORD, "psrlq mm0,", 1, {RM}}, // D3 + {1, QWORD, "paddq mm0,", 1, {RM}}, // D4 + {1, QWORD, "pmullw mm0,", 1, {RM}}, // D5 + {0, 0, ".word 0x0fd6,", 0}, // D6 + {0, 0, ".word 0x0fd7,", 0}, // D7 + {1, QWORD, "psubusb mm0,", 1, {RM}}, // D8 + {1, QWORD, "psubusw mm0,", 1, {RM}}, // D9 + {1, QWORD, "pminub mm0,", 1, {RM}}, // DA + {1, QWORD, "pand mm0,", 1, {RM}}, // DB + {1, QWORD, "paddusb mm0,", 1, {RM}}, // DC + {1, QWORD, "psubusw mm0,", 1, {RM}}, // DD + {1, QWORD, "pmaxub mm0,", 1, {RM}}, // DE + {1, QWORD, "pandn mm0,", 1, {RM}}, // DF + {1, QWORD, "pavgb mm0,", 1, {RM}}, // E0 + {1, QWORD, "psraw mm0,", 1, {RM}}, // E1 + {1, QWORD, "psrad mm0,", 1, {RM}}, // E2 + {1, QWORD, "pavgw mm0,", 1, {RM}}, // E3 + {1, QWORD, "pmulhuw mm0,", 1, {RM}}, // E4 + {1, QWORD, "pmulhw mm0,", 1, {RM}}, // E5 + {0, 0, ".word 0x0fe6", 0}, // E6 + {1, QWORD, "movntq ", 2, {RM, MM0}}, // E7 + {1, QWORD, "psubsb mm0,", 1, {RM}}, // E8 + {1, QWORD, "psubsw mm0,", 1, {RM}}, // E9 + {1, QWORD, "pminsw mm0,", 1, {RM}}, // EA + {1, QWORD, "por mm0,", 1, {RM}}, // EB + {1, QWORD, "paddsb mm0,", 1, {RM}}, // EC + {1, QWORD, "paddsw mm0,", 1, {RM}}, // ED + {1, QWORD, "pmaxsw mm0,", 1, {RM}}, // EE + {1, QWORD, "pxor mm0,", 1, {RM}}, // EF + {0, 0, ".word 0x0ff0", 0}, // F0 + {1, QWORD, "psllow mm0,", 1, {RM}}, // F1 + {1, QWORD, "pslld mm0,", 1, {RM}}, // F2 + {1, QWORD, "psllq mm0,", 1, {RM}}, // F3 + {1, QWORD, "pmuludq mm0,", 1, {RM}}, // F4 + {1, QWORD, "pmaddwd mm0,", 1, {RM}}, // F5 + {1, QWORD, "psadbw mm0,", 1, {RM}}, // F6 + {0}, // F7 - Illegal + {1, QWORD, "psubb mm0,", 1, {RM}}, // F8 + {1, QWORD, "psubw mm0,", 1, {RM}}, // F9 + {1, QWORD, "psubd mm0,", 1, {RM}}, // FA + {1, QWORD, "psubq mm0,", 1, {RM}}, // FB + {1, QWORD, "paddb mm0,", 1, {RM}}, // FC + {1, QWORD, "paddw mm0,", 1, {RM}}, // FD + {1, QWORD, "paddd mm0,", 1, {RM}}, // FE + {0}, // FF - Illegal + }; - unsigned char *base = bytes; - unsigned char opcode = *bytes++; - char modRM_mod = 0; - char modRM_reg = 0; - char modRM_rm = 0; + unsigned char* base = bytes; + unsigned char opcode = *bytes++; + char modRM_mod = 0; + char modRM_reg = 0; + char modRM_rm = 0; + INSTRUCTION* instructions = standard_instructions; + if (opcode == 0x0F) { // Extended opcodes + if (max < 2 || *bytes == 0x0F || *bytes == 0xA6 || *bytes == 0xA7 || + *bytes == 0xF7 || *bytes == 0xFF) { + goto ILLEGAL; + } - INSTRUCTION *instructions= standard_instructions; - if (opcode == 0x0F) { // Extended opcodes - if (max < 2 || *bytes == 0x0F || *bytes == 0xA6 || *bytes == 0xA7 || *bytes == 0xF7 || *bytes == 0xFF) { - goto ILLEGAL; - } + instructions = extended_instructions; + opcode = *bytes++; + } - instructions = extended_instructions; - opcode = *bytes++; - } + if (!instructions[opcode].hasModRM) { + goto OUTPUT; // Skip ModRM byte parsing + } - if (!instructions[opcode].hasModRM) { - goto OUTPUT; // Skip ModRM byte parsing - } + char RM_output[0xFF]; + char R_output[0xFF]; - char RM_output[0xFF]; - char R_output[0xFF]; + modRM_mod = ((*bytes) >> 6) & 0b11; // Bits 7-6. + modRM_reg = ((*bytes) >> 3) & 0b111; // Bits 5-3. + modRM_rm = (*bytes++) & 0b111; // Bits 2-0. - modRM_mod = ((*bytes) >> 6) & 0b11; // Bits 7-6. - modRM_reg = ((*bytes) >> 3) & 0b111; // Bits 5-3. - modRM_rm = (*bytes++) & 0b111; // Bits 2-0. + switch (instructions[opcode].size) { + case WORD: + strcpy(R_output, register_mnemonics16[(int)modRM_reg]); + break; + case BYTE: + strcpy(R_output, register_mnemonics8[(int)modRM_reg]); + break; + default: + strcpy(R_output, register_mnemonics32[(int)modRM_reg]); + } - switch (instructions[opcode].size) { - case WORD: - strcpy(R_output, register_mnemonics16[(int)modRM_reg]); - break; - case BYTE: - strcpy(R_output, register_mnemonics8[(int)modRM_reg]); - break; - default: - strcpy(R_output, register_mnemonics32[(int)modRM_reg]); - } + if (modRM_mod == 0b11) { // Register addressing mode. + switch (instructions[opcode].size) { + case BYTE: + sprintf(RM_output, "%s", register_mnemonics8[(int)modRM_rm]); + break; + case WORD: + sprintf(RM_output, "%s", register_mnemonics16[(int)modRM_rm]); + break; + default: + sprintf(RM_output, "%s", register_mnemonics32[(int)modRM_rm]); + } + } else if (modRM_mod == 0b00 && + modRM_rm == 0b101) { // Displacement only addressing mode. + sprintf(RM_output, "[0x%x]", *(int*)bytes); + bytes += 4; + } else { // One-byte or four-byte signed displacement follows addressing + // mode byte(s). + if (modRM_rm == 0b100) { // Contains SIB byte + char SIB_scale = ((*bytes) >> 6) & 0b11; // Bits 7-6. + char SIB_index = ((*bytes) >> 3) & 0b111; // Bits 5-3. + char SIB_base = (*bytes++) & 0b111; // Bits 2-0. - if (modRM_mod == 0b11) { // Register addressing mode. - switch (instructions[opcode].size) { - case BYTE: - sprintf(RM_output, "%s", register_mnemonics8[(int)modRM_rm]); - break; - case WORD: - sprintf(RM_output, "%s", register_mnemonics16[(int)modRM_rm]); - break; - default: - sprintf(RM_output, "%s", register_mnemonics32[(int)modRM_rm]); - } - } else if (modRM_mod == 0b00 && modRM_rm == 0b101) { // Displacement only addressing mode. - sprintf(RM_output, "[0x%x]", *(int *)bytes); - bytes += 4; - } else { // One-byte or four-byte signed displacement follows addressing mode byte(s). - if (modRM_rm == 0b100) { // Contains SIB byte - char SIB_scale = ((*bytes) >> 6) & 0b11; // Bits 7-6. - char SIB_index = ((*bytes) >> 3) & 0b111; // Bits 5-3. - char SIB_base = (*bytes++) & 0b111; // Bits 2-0. + if (SIB_base == 0b101 && modRM_mod == 0b00) { + sprintf(RM_output, "[0x%x", *(int*)bytes); + bytes += 4; + } else { + strcpy(RM_output, sib_base_mnemonics[(int)SIB_base]); + } - if (SIB_base == 0b101 && modRM_mod == 0b00) { - sprintf(RM_output, "[0x%x", *(int *)bytes); - bytes += 4; - } else { - strcpy(RM_output, sib_base_mnemonics[(int)SIB_base]); - } + if (SIB_index != 0b100) { + strcat(RM_output, "+"); + strcat(RM_output, register_mnemonics32[(int)SIB_index]); + strcat(RM_output, sib_scale_mnemonics[(int)SIB_scale]); + } + } else { + sprintf(RM_output, "[%s", register_mnemonics32[(int)modRM_rm]); + } - if (SIB_index != 0b100) { - strcat(RM_output, "+"); - strcat(RM_output, register_mnemonics32[(int)SIB_index]); - strcat(RM_output, sib_scale_mnemonics[(int)SIB_scale]); - } - } else { - sprintf(RM_output, "[%s", register_mnemonics32[(int)modRM_rm]); - } + if (modRM_mod == 0b01) { // One-byte signed displacement follows + // addressing mode byte(s). + if (*bytes > 0x7F) { + sprintf(RM_output + strlen(RM_output), "-0x%x]", + -*(char*)bytes++); + } else { + sprintf(RM_output + strlen(RM_output), "+0x%x]", + *(char*)bytes++); + } + } else if (modRM_mod == 0b10) { // Four-byte signed displacement + // follows addressing mode byte(s). + if (*(unsigned int*)bytes > 0x7FFFFFFF) { + sprintf(RM_output + strlen(RM_output), "-0x%x]", -*(int*)bytes); + } else { + sprintf(RM_output + strlen(RM_output), "+0x%x]", + *(unsigned int*)bytes); + } - if (modRM_mod == 0b01) { // One-byte signed displacement follows addressing mode byte(s). - if (*bytes > 0x7F) { - sprintf(RM_output + strlen(RM_output), "-0x%x]", -*(char *)bytes++); - } else { - sprintf(RM_output + strlen(RM_output), "+0x%x]", *(char *)bytes++); - } - } else if (modRM_mod == 0b10) { // Four-byte signed displacement follows addressing mode byte(s). - if (*(unsigned int *)bytes > 0x7FFFFFFF) { - sprintf(RM_output + strlen(RM_output), "-0x%x]", -*(int *)bytes); - } else { - sprintf(RM_output + strlen(RM_output), "+0x%x]", *(unsigned int *)bytes); - } - - bytes += 4; - } else { - strcat(RM_output, "]"); - } - } + bytes += 4; + } else { + strcat(RM_output, "]"); + } + } OUTPUT: - strcpy(output, instructions[opcode].mnemonic); - int i; - for (i = 0; i < instructions[opcode].argument_count; i++) { - if (i > 0) { - strcat(output, ","); - } + strcpy(output, instructions[opcode].mnemonic); + int i; + for (i = 0; i < instructions[opcode].argument_count; i++) { + if (i > 0) { + strcat(output, ","); + } - switch (instructions[opcode].arguments[i]) { - case RM: - if (modRM_mod != 0b11) { - switch (instructions[opcode].size) { - case BYTE: - strcat(output, "BYTE PTR "); - break; - case WORD: - strcat(output, "WORD PTR "); - break; - case DWORD: - strcat(output, "DWORD PTR "); - break; - case QWORD: - strcat(output, "QWORD PTR "); - break; - case FWORD: - strcat(output, "FWORD PTR "); - break; - case XMMWORD: - strcat(output, "XMMWORD PTR "); - break; - } - } + switch (instructions[opcode].arguments[i]) { + case RM: + if (modRM_mod != 0b11) { + switch (instructions[opcode].size) { + case BYTE: + strcat(output, "BYTE PTR "); + break; + case WORD: + strcat(output, "WORD PTR "); + break; + case DWORD: + strcat(output, "DWORD PTR "); + break; + case QWORD: + strcat(output, "QWORD PTR "); + break; + case FWORD: + strcat(output, "FWORD PTR "); + break; + case XMMWORD: + strcat(output, "XMMWORD PTR "); + break; + } + } - strcat(output, RM_output); - break; - case R: - strcat(output, R_output); - break; - case IMM8: - sprintf(output + strlen(output), "0x%x", *bytes++); - break; - case IMM16: - sprintf(output + strlen(output), "0x%x", *(short *)bytes); - bytes += 2; - break; - case IMM32: - sprintf(output + strlen(output), "0x%x", *(int *)bytes); - bytes += 4; - break; - case REL8: - sprintf(output + strlen(output), "0x%x", (unsigned int) (offset + ((bytes - base) + 1) + *(char *)bytes)); - bytes += 1; - break; - case REL32: - sprintf(output + strlen(output), "0x%x", (unsigned int) (offset + ((bytes - base) + 4) + *(int *)bytes)); - bytes += 4; - break; - case PTR1632: - sprintf(output + strlen(output), "0x%x:0x%x", *(short *)(bytes + 4), *(int *)bytes); - bytes += 6; - break; - case AL: - strcat(output, "al"); - break; - case EAX: - strcat(output, "eax"); - break; - case ES: - strcat(output, "es"); - break; - case CS: - strcat(output, "cs"); - break; - case SS: - strcat(output, "ss"); - break; - case DS: - strcat(output, "ds"); - break; - case ONE: - strcat(output, "1"); - break; - case CL: - strcat(output, "cl"); - break; - case XMM0: - strcat(output, "xmm0"); - break; - case BND0: - strcat(output, "bnd0"); - break; - case BAD: - bytes++; - break; - case MM0: - strcat(output, "mm0"); - break; - } - } + strcat(output, RM_output); + break; + case R: + strcat(output, R_output); + break; + case IMM8: + sprintf(output + strlen(output), "0x%x", *bytes++); + break; + case IMM16: + sprintf(output + strlen(output), "0x%x", *(short*)bytes); + bytes += 2; + break; + case IMM32: + sprintf(output + strlen(output), "0x%x", *(int*)bytes); + bytes += 4; + break; + case REL8: + sprintf( + output + strlen(output), "0x%x", + (unsigned int)(offset + ((bytes - base) + 1) + *(char*)bytes)); + bytes += 1; + break; + case REL32: + sprintf( + output + strlen(output), "0x%x", + (unsigned int)(offset + ((bytes - base) + 4) + *(int*)bytes)); + bytes += 4; + break; + case PTR1632: + sprintf(output + strlen(output), "0x%x:0x%x", *(short*)(bytes + 4), + *(int*)bytes); + bytes += 6; + break; + case AL: + strcat(output, "al"); + break; + case EAX: + strcat(output, "eax"); + break; + case ES: + strcat(output, "es"); + break; + case CS: + strcat(output, "cs"); + break; + case SS: + strcat(output, "ss"); + break; + case DS: + strcat(output, "ds"); + break; + case ONE: + strcat(output, "1"); + break; + case CL: + strcat(output, "cl"); + break; + case XMM0: + strcat(output, "xmm0"); + break; + case BND0: + strcat(output, "bnd0"); + break; + case BAD: + bytes++; + break; + case MM0: + strcat(output, "mm0"); + break; + } + } - if (((unsigned int)(bytes - base)) <= max) { - return bytes - base; - } + if (((unsigned int)(bytes - base)) <= max) { + return (unsigned int)(bytes - base); + } ILLEGAL: - sprintf(output, ".byte 0x%02x\n", opcode); - return 1; + sprintf(output, ".byte 0x%02x\n", opcode); + return 1; } diff --git a/x86_64_rt.c b/x86_64_rt.c index 39a6abc9ae..2a686a79bd 100644 --- a/x86_64_rt.c +++ b/x86_64_rt.c @@ -1,8 +1,7 @@ -#include "config.h" #include #include +#include "config.h" #include "dill.h" -#include "dill_internal.h" #ifdef HAVE_SYS_MMAN_H #include "sys/mman.h" #endif @@ -11,15 +10,23 @@ #endif #ifdef USE_VIRTUAL_PROTECT #include -#include #include +#include #endif +#include "dill_internal.h" #include "x86.h" -extern double dill_x86_64_hidden_ULtoD(unsigned long a) -{ return (double) a; } -extern unsigned long dill_x86_64_hidden_DtoUL(double a) -{ unsigned long l = a; return l; } +extern double +dill_x86_64_hidden_ULtoD(size_t a) +{ + return (double)a; +} +extern size_t +dill_x86_64_hidden_DtoUL(double a) +{ + size_t l = (long)a; + return l; +} static xfer_entry x86_64_xfer_recs[5] = { {"dill_x86_64_hidden_ULtoD", dill_x86_64_hidden_ULtoD}, @@ -27,50 +34,50 @@ static xfer_entry x86_64_xfer_recs[5] = { {(char*)0, (void*)0}}; extern void -x86_64_rt_call_link(char *code, call_t *t) +x86_64_rt_call_link(char* code, call_t* t) { int i; - for(i=0; i< t->call_count; i++) { - uintptr_t tmp = (uintptr_t) t->call_locs[i].xfer_addr; - long *call_addr = (long *) (code + t->call_locs[i].loc + 2); - memcpy(call_addr, &tmp, 8); + for (i = 0; i < t->call_count; i++) { + uintptr_t tmp = (uintptr_t)t->call_locs[i].xfer_addr; + long* call_addr = (long*)(code + t->call_locs[i].loc + 2); + memcpy(call_addr, &tmp, 8); } } static void -x86_64_flush(void *base, void *limit) +x86_64_flush(void* base, void* limit) { #if defined(HOST_X86_64) { - volatile void *ptr = base; + volatile void* ptr = base; - /* flush every 8 bytes of preallocated insn stream. */ - while((char*)ptr < (char*) limit) { + /* flush every 8 bytes of preallocated insn stream. */ + while ((char*)ptr < (char*)limit) { #ifndef _MSC_VER #ifdef __x86_64__ - asm volatile ("clflush (%0)" : /* */ : "r" (ptr)); + asm volatile("clflush (%0)" : /* */ : "r"(ptr)); #endif #else - _mm_clflush((const void *) ptr); + _mm_clflush((const void*)ptr); #endif - ptr = (char *)ptr + 8; - } + ptr = (char*)ptr + 8; + } #ifndef _MSC_VER - asm volatile("nop"); - asm volatile("nop"); - asm volatile("nop"); - asm volatile("nop"); - asm volatile("nop"); + asm volatile("nop"); + asm volatile("nop"); + asm volatile("nop"); + asm volatile("nop"); + asm volatile("nop"); #endif } #endif -} +} -extern char * -x86_64_package_stitch(char *code, call_t *t, dill_pkg pkg) +extern char* +x86_64_package_stitch(char* code, call_t* t, dill_pkg pkg) { - char *tmp = code; + char* tmp = code; dill_lookup_xfer_addrs(t, &x86_64_xfer_recs[0]); x86_64_rt_call_link(code, t); x86_64_flush(code, code + 1024); @@ -78,15 +85,15 @@ x86_64_package_stitch(char *code, call_t *t, dill_pkg pkg) #ifndef MAP_ANONYMOUS #define MAP_ANONYMOUS MAP_ANON #endif - tmp = (void*)mmap(0, pkg->code_size, - PROT_EXEC | PROT_READ | PROT_WRITE, - MAP_ANONYMOUS|MAP_PRIVATE, -1, 0); + tmp = (void*)mmap(0, pkg->code_size, PROT_EXEC | PROT_READ | PROT_WRITE, + MAP_ANONYMOUS | MAP_PRIVATE, -1, 0); memcpy(tmp, code, pkg->code_size); #endif #ifdef USE_VIRTUAL_PROTECT int result; DWORD dummy; - result = VirtualProtect(tmp, pkg->code_size, PAGE_EXECUTE_READWRITE, &dummy); + result = + VirtualProtect(tmp, pkg->code_size, PAGE_EXECUTE_READWRITE, &dummy); #endif return tmp + pkg->entry_offset; } From 8ea624a70da0f17b0e76cfc56a00b3ec705b8663 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Sun, 2 Jul 2023 15:32:22 -0400 Subject: [PATCH 020/183] Tweaks for BP5 on Windows --- cmake/DetectOptions.cmake | 2 +- source/adios2/engine/bp5/BP5Reader.cpp | 12 ++--- source/adios2/engine/bp5/BP5Writer.cpp | 54 +++++++++++-------- .../bp5/BP5Writer_EveryoneWrites_Async.cpp | 2 +- .../toolkit/format/bp5/BP5Deserializer.cpp | 44 +++++++-------- .../toolkit/format/bp5/BP5Serializer.cpp | 39 +++++++------- .../adios2/bindings/C/TestBPWriteTypes.cpp | 10 ---- .../adios2/interface/TestADIOSInterface.cpp | 18 +------ 8 files changed, 85 insertions(+), 96 deletions(-) diff --git a/cmake/DetectOptions.cmake b/cmake/DetectOptions.cmake index b3c271c647..509b221fd2 100644 --- a/cmake/DetectOptions.cmake +++ b/cmake/DetectOptions.cmake @@ -451,7 +451,7 @@ if(DAOS_FOUND) endif() # BP5 -if(ADIOS2_USE_BP5 AND NOT WIN32) +if(ADIOS2_USE_BP5) set(ADIOS2_HAVE_BP5 TRUE) endif() diff --git a/source/adios2/engine/bp5/BP5Reader.cpp b/source/adios2/engine/bp5/BP5Reader.cpp index 1e8b6abf00..673dbfbd61 100644 --- a/source/adios2/engine/bp5/BP5Reader.cpp +++ b/source/adios2/engine/bp5/BP5Reader.cpp @@ -368,7 +368,7 @@ void BP5Reader::PerformGets() // then main thread process the last subset for (size_t tid = 0; tid < nThreads - 1; ++tid) { - futures[tid] = std::async(std::launch::async, lf_Reader, tid + 1, + futures[tid] = std::async(std::launch::async, lf_Reader, (int)(tid + 1), maxOpenFiles); } // main thread runs last subset of reads @@ -513,9 +513,9 @@ void BP5Reader::InitParameters() } size_t limit = helper::RaiseLimitNoFile(); - if (m_Parameters.MaxOpenFilesAtOnce > limit - 8) + if (m_Parameters.MaxOpenFilesAtOnce > (unsigned int) limit - 8) { - m_Parameters.MaxOpenFilesAtOnce = limit - 8; + m_Parameters.MaxOpenFilesAtOnce = (unsigned int) limit - 8; } } @@ -986,11 +986,11 @@ size_t BP5Reader::ParseMetadataIndex(format::BufferSTL &bufferSTL, { auto p = m_WriterMap.emplace(m_StepsCount, WriterMapStruct()); auto &s = p.first->second; - s.WriterCount = helper::ReadValue( + s.WriterCount = (uint32_t)helper::ReadValue( buffer, position, m_Minifooter.IsLittleEndian); - s.AggregatorCount = helper::ReadValue( + s.AggregatorCount = (uint32_t)helper::ReadValue( buffer, position, m_Minifooter.IsLittleEndian); - s.SubfileCount = helper::ReadValue( + s.SubfileCount = (uint32_t)helper::ReadValue( buffer, position, m_Minifooter.IsLittleEndian); // Get the process -> subfile map s.RankToSubfile.reserve(s.WriterCount); diff --git a/source/adios2/engine/bp5/BP5Writer.cpp b/source/adios2/engine/bp5/BP5Writer.cpp index 1deb7090cb..32cb7e8bda 100644 --- a/source/adios2/engine/bp5/BP5Writer.cpp +++ b/source/adios2/engine/bp5/BP5Writer.cpp @@ -160,6 +160,7 @@ void BP5Writer::WriteMetaMetadata( m_FileMetaMetadataManager.WriteFiles((char *)b.MetaMetaInfo, b.MetaMetaInfoLen); } + m_FileMetaMetadataManager.FlushFiles(); } uint64_t @@ -206,6 +207,8 @@ BP5Writer::WriteMetadata(const std::vector &MetaDataBlocks, MetaDataSize += b.iov_len; } + m_FileMetadataManager.FlushFiles(); + m_MetaDataPos += MetaDataSize; return MetaDataSize; } @@ -272,6 +275,7 @@ void BP5Writer::WriteData(format::BufferV *Data) std::to_string(m_Parameters.AggregationType) + "is not supported in BP5"); } + m_FileDataManager.FlushFiles(); delete Data; } } @@ -337,8 +341,6 @@ void BP5Writer::WriteData_EveryoneWrites(format::BufferV *Data, void BP5Writer::WriteMetadataFileIndex(uint64_t MetaDataPos, uint64_t MetaDataSize) { - m_FileMetadataManager.FlushFiles(); - // bufsize: Step record size_t bufsize = 1 + (4 + ((FlushPosSizeInfo.size() * 2) + 1) * m_Comm.Size()) * @@ -407,7 +409,6 @@ void BP5Writer::WriteMetadataFileIndex(uint64_t MetaDataPos, } m_FileMetadataIndexManager.WriteFiles((char *)buf.data(), buf.size()); - #ifdef DUMPDATALOCINFO std::cout << "Flush count is :" << FlushPosSizeInfo.size() << std::endl; std::cout << "Write Index positions = {" << std::endl; @@ -427,6 +428,8 @@ void BP5Writer::WriteMetadataFileIndex(uint64_t MetaDataPos, } std::cout << "}" << std::endl; #endif + m_FileMetadataIndexManager.FlushFiles(); + /* reset for next timestep */ FlushPosSizeInfo.clear(); } @@ -472,7 +475,7 @@ void BP5Writer::MarshalAttributes() if (!attributePair.second->m_IsSingleValue) { - element_count = (*baseAttr)->m_Elements; + element_count = (int)(*baseAttr)->m_Elements; } if (type == DataType::None) @@ -511,7 +514,7 @@ void BP5Writer::MarshalAttributes() void *data_addr = &attribute.m_DataSingleValue; \ if (!attribute.m_IsSingleValue) \ { \ - element_count = attribute.m_Elements; \ + element_count = (int)attribute.m_Elements; \ data_addr = attribute.m_DataArray.data(); \ } \ m_BP5Serializer.MarshalAttribute(attribute.m_Name.c_str(), type, \ @@ -536,7 +539,7 @@ void BP5Writer::EndStep() // true: advances step auto TSInfo = m_BP5Serializer.CloseTimestep( - m_WriterStep, m_Parameters.AsyncWrite || m_Parameters.DirectIO); + (int)m_WriterStep, m_Parameters.AsyncWrite || m_Parameters.DirectIO); /* TSInfo includes NewMetaMetaBlocks, the MetaEncodeBuffer, the * AttributeEncodeBuffer and the data encode Vector */ @@ -684,6 +687,10 @@ void BP5Writer::EndStep() m_AsyncWriteLock.unlock(); } } + m_FileMetadataIndexManager.FlushFiles(); + m_FileMetadataManager.FlushFiles(); + m_FileMetaMetadataManager.FlushFiles(); + m_FileDataManager.FlushFiles(); m_Profiler.Stop("ES"); m_WriterStep++; @@ -752,7 +759,8 @@ void BP5Writer::InitParameters() { size_t k = m_Parameters.StripeSize / m_Parameters.DirectIOAlignOffset + 1; - m_Parameters.StripeSize = k * m_Parameters.DirectIOAlignOffset; + m_Parameters.StripeSize = + (unsigned int)(k * m_Parameters.DirectIOAlignOffset); } if (m_Parameters.BufferChunkSize % m_Parameters.DirectIOAlignOffset) { @@ -852,12 +860,12 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) { case IndexRecord::WriterMapRecord: { - m_AppendWriterCount = - helper::ReadValue(buffer, position, IsLittleEndian); - m_AppendAggregatorCount = - helper::ReadValue(buffer, position, IsLittleEndian); - m_AppendSubfileCount = - helper::ReadValue(buffer, position, IsLittleEndian); + m_AppendWriterCount = (uint32_t)helper::ReadValue( + buffer, position, IsLittleEndian); + m_AppendAggregatorCount = (uint32_t)helper::ReadValue( + buffer, position, IsLittleEndian); + m_AppendSubfileCount = (uint32_t)helper::ReadValue( + buffer, position, IsLittleEndian); if (m_AppendSubfileCount > nDataFiles) { nDataFiles = m_AppendSubfileCount; @@ -939,12 +947,12 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) { case IndexRecord::WriterMapRecord: { - m_AppendWriterCount = - helper::ReadValue(buffer, position, IsLittleEndian); - m_AppendAggregatorCount = - helper::ReadValue(buffer, position, IsLittleEndian); - m_AppendSubfileCount = - helper::ReadValue(buffer, position, IsLittleEndian); + m_AppendWriterCount = (uint32_t)helper::ReadValue( + buffer, position, IsLittleEndian); + m_AppendAggregatorCount = (uint32_t)helper::ReadValue( + buffer, position, IsLittleEndian); + m_AppendSubfileCount = (uint32_t)helper::ReadValue( + buffer, position, IsLittleEndian); // Get the process -> subfile map writerToFileMap.clear(); @@ -1796,8 +1804,8 @@ void BP5Writer::PutCommon(VariableBase &variable, const void *values, bool sync) helper::DimsArray MemoryCount(variable.m_MemoryCount); helper::DimsArray varCount(variable.m_Count); - int DimCount = variable.m_Count.size(); - std::vector ZeroDims(DimCount); + int DimCount = (int)variable.m_Count.size(); + helper::DimsArray ZeroDims(DimCount, (size_t)0); // get a temporary span then fill with memselection now format::BufferV::BufferPos bp5span(0, 0, 0); @@ -1816,8 +1824,8 @@ void BP5Writer::PutCommon(VariableBase &variable, const void *values, bool sync) } helper::NdCopy((const char *)values, helper::CoreDims(ZeroDims), MemoryCount, sourceRowMajor, false, (char *)ptr, - MemoryStart, varCount, sourceRowMajor, false, ObjSize, - helper::CoreDims(), helper::CoreDims(), + MemoryStart, varCount, sourceRowMajor, false, + (int)ObjSize, helper::CoreDims(), helper::CoreDims(), helper::CoreDims(), helper::CoreDims(), false /* safemode */, variable.m_MemSpace); } diff --git a/source/adios2/engine/bp5/BP5Writer_EveryoneWrites_Async.cpp b/source/adios2/engine/bp5/BP5Writer_EveryoneWrites_Async.cpp index c9f8f02079..a8f7827adb 100644 --- a/source/adios2/engine/bp5/BP5Writer_EveryoneWrites_Async.cpp +++ b/source/adios2/engine/bp5/BP5Writer_EveryoneWrites_Async.cpp @@ -88,7 +88,7 @@ void BP5Writer::AsyncWriteOwnData(AsyncWriteInfo *info, size_t wrote = 0; size_t block = 0; size_t temp_offset = 0; - size_t max_size = std::max(1024 * 1024UL, totalsize / 100UL); + size_t max_size = std::max((size_t)1024 * 1024UL, totalsize / 100UL); bool firstWrite = seekOnFirstWrite; while (block < nBlocks) diff --git a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp index 9a0c98c432..17a0cc57d5 100644 --- a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp +++ b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp @@ -41,6 +41,7 @@ using namespace adios2::helper; #ifdef _WIN32 #pragma warning(disable : 4250) +#define strdup(x) _strdup(x) #endif namespace adios2 @@ -57,7 +58,7 @@ void BP5Deserializer::InstallMetaMetaData(MetaMetaInfoBlock &MM) memcpy(FormatID, MM.MetaMetaID, MM.MetaMetaIDLen); memcpy(MetaMetaInfo, MM.MetaMetaInfo, MM.MetaMetaInfoLen); load_external_format_FMcontext(FMContext_from_FFS(ReaderFFSContext), - FormatID, MM.MetaMetaIDLen, MetaMetaInfo); + FormatID, (int) MM.MetaMetaIDLen, MetaMetaInfo); free(FormatID); } @@ -82,7 +83,7 @@ bool BP5Deserializer::NameIndicatesArray(const char *Name) bool BP5Deserializer::NameIndicatesAttrArray(const char *Name) { - int Len = strlen(Name); + auto Len = strlen(Name); return (strcmp("ElemCount", Name + Len - 9) == 0); } @@ -175,7 +176,7 @@ const char *BP5Deserializer::BreakdownVarName(const char *Name, ++p; // skip '_' if (*type_p == DataType::Struct) { - p = index(p, '_'); + p = strchr(p, '_'); ++p; } return p; @@ -216,7 +217,7 @@ void BP5Deserializer::BreakdownV1ArrayName(const char *Name, char **base_name_p, const char *NameStart = strchr(strchr(Name + 4, '_') + 1, '_') + 1; // + 3 to skip BP5_ or bp5_ prefix sscanf(Name + 4, "%d_%d", &ElementSize, &Type); - const char *Plus = index(Name, '+'); + const char *Plus = strchr(Name, '+'); MinMax = false; while (Plus && (*Plus == '+')) { @@ -224,7 +225,7 @@ void BP5Deserializer::BreakdownV1ArrayName(const char *Name, char **base_name_p, if (sscanf(Plus, "+%dO", &Len) == 1) { // Operator Spec Operator = true; - const char *OpStart = index(Plus, 'O') + 1; + const char *OpStart = strchr(Plus, 'O') + 1; Plus = OpStart + Len; } else if (strncmp(Plus, "+MM", 3) == 0) @@ -236,7 +237,7 @@ void BP5Deserializer::BreakdownV1ArrayName(const char *Name, char **base_name_p, *element_size_p = ElementSize; *type_p = (DataType)Type; *base_name_p = strdup(NameStart); - *(rindex(*base_name_p, '_')) = 0; + *(strrchr(*base_name_p, '_')) = 0; } void BP5Deserializer::BreakdownArrayName(const char *Name, char **base_name_p, @@ -386,7 +387,7 @@ BP5Deserializer::ControlInfo *BP5Deserializer::BuildControl(FMFormat Format) FMFieldList List = StructList[0].field_list; while (List->field_name != NULL) { - char *ind = (char *)index(List->field_type, '['); + char *ind = (char *)strchr(List->field_type, '['); if (!ind) { DataType Type = TranslateFFSType2ADIOS( @@ -426,7 +427,7 @@ BP5Deserializer::ControlInfo *BP5Deserializer::BuildControl(FMFormat Format) } if (V1_fields) { - i += MetaRecFields; + i += (int)MetaRecFields; } else { @@ -655,7 +656,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, } else { - int DecodedLength = FFS_est_decode_length( + auto DecodedLength = FFS_est_decode_length( ReaderFFSContext, (char *)MetadataBlock, BlockLen); BaseData = malloc(DecodedLength); FFSdecode_to_buffer(ReaderFFSContext, (char *)MetadataBlock, BaseData); @@ -882,7 +883,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, { VarRec->Variable = ArrayVarSetup( m_Engine, VarRec->VarName, VarRec->Type, - meta_base->Dims, meta_base->Shape, meta_base->Offsets, + (int)meta_base->Dims, meta_base->Shape, meta_base->Offsets, meta_base->Count, VarRec->Def, VarRec->ReaderDef); static_cast(VarRec->Variable)->m_Engine = m_Engine; @@ -957,6 +958,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, } catch (const std::invalid_argument &e) { + (void)e; // We'll catch here if a variable creation encounters a duplicate // variable name in the IO helper::Throw( @@ -1025,7 +1027,7 @@ void BP5Deserializer::InstallAttributeData(void *AttributeBlock, } else { - int DecodedLength = FFS_est_decode_length( + auto DecodedLength = FFS_est_decode_length( ReaderFFSContext, (char *)AttributeBlock, BlockLen); BaseData = malloc(DecodedLength); FFSBuffer decode_buf = @@ -1120,7 +1122,7 @@ void BP5Deserializer::InstallAttributesV1(FFSTypeHandle FFSformat, i++; char *FieldName = strdup(FieldList[i].field_name + 4); // skip BP5_ char *FieldType = strdup(FieldList[i].field_type); - *index(FieldType, '[') = 0; + *strchr(FieldType, '[') = 0; Type = (DataType)TranslateFFSType2ADIOS(FieldType, FieldList[i].field_size); if (Type == adios2::DataType::Struct) @@ -1767,7 +1769,7 @@ void BP5Deserializer::FinalizeGet(const ReadRequest &Read, const bool freeAddr) (MetaArrayRec *)GetMetadataBase(Req.VarRec, Req.Step, Read.WriterRank); size_t *GlobalDimensions = writer_meta_base->Shape; - int DimCount = writer_meta_base->Dims; + auto DimCount = writer_meta_base->Dims; std::vector ZeroSel(DimCount); size_t *RankOffset = &writer_meta_base->Offsets[DimCount * Read.BlockID]; size_t *RankSize = &writer_meta_base->Count[DimCount * Read.BlockID]; @@ -1818,7 +1820,7 @@ void BP5Deserializer::FinalizeGet(const ReadRequest &Read, const bool freeAddr) { SelOffset = ZeroSel.data(); } - for (int i = 0; i < DimCount; i++) + for (int i = 0; i < (int) DimCount; i++) { GlobalDimensions[i] = RankSize[i]; } @@ -1929,7 +1931,7 @@ int BP5Deserializer::FindOffset(size_t Dims, const size_t *Size, int Offset = 0; for (size_t i = 0; i < Dims; i++) { - Offset = Index[i] + (Size[i] * Offset); + Offset = (int)(Index[i] + (Size[i] * Offset)); } return Offset; } @@ -2030,7 +2032,7 @@ void *BP5Deserializer::GetMetadataBase(BP5VarRec *VarRec, size_t Step, size_t CI_VarIndex = (*CI->CIVarIndex)[VarRec->VarNum]; BP5MetadataInfoStruct *BaseData = (BP5MetadataInfoStruct *)(*MetadataBaseArray[Step])[WriterRank]; - if (!BP5BitfieldTest(BaseData, CI_VarIndex)) + if (!BP5BitfieldTest(BaseData, (int)CI_VarIndex)) { // Var appears in CI, but wasn't written on this step return NULL; @@ -2058,12 +2060,12 @@ MinVarInfo *BP5Deserializer::MinBlocksInfo(const VariableBase &Var, size_t Step) { BP5VarRec *VarRec = LookupVarByKey((void *)&Var); - MinVarInfo *MV = new MinVarInfo(VarRec->DimCount, VarRec->GlobalDims); + MinVarInfo *MV = new MinVarInfo((int)VarRec->DimCount, VarRec->GlobalDims); const size_t writerCohortSize = WriterCohortSize(Step); size_t Id = 0; MV->Step = Step; - MV->Dims = VarRec->DimCount; + MV->Dims = (int)VarRec->DimCount; MV->Shape = NULL; MV->IsReverseDims = ((MV->Dims > 1) && (m_WriterIsRowMajor != m_ReaderIsRowMajor)); @@ -2093,7 +2095,7 @@ MinVarInfo *BP5Deserializer::MinBlocksInfo(const VariableBase &Var, size_t Step) { MinBlockInfo Blk; Blk.MinMax.Init(VarRec->Type); - Blk.WriterID = WriterRank; + Blk.WriterID = (int)WriterRank; Blk.BlockID = Id++; Blk.BufferP = writer_meta_base; Blk.Start = NULL; @@ -2157,7 +2159,7 @@ MinVarInfo *BP5Deserializer::MinBlocksInfo(const VariableBase &Var, size_t Step) if (writer_meta_base->Count) Count = writer_meta_base->Count + (i * MV->Dims); MinBlockInfo Blk; - Blk.WriterID = WriterRank; + Blk.WriterID = (int)WriterRank; Blk.BlockID = Id++; Blk.Start = Offsets; Blk.Count = Count; @@ -2285,7 +2287,7 @@ size_t BP5Deserializer::RelativeToAbsoluteStep(const BP5VarRec *VarRec, BaseData = (BP5MetadataInfoStruct *)(*MetadataBaseArray[AbsStep])[WriterRank]; if (BP5BitfieldTest((BP5MetadataInfoStruct *)BaseData, - VarRec->VarNum)) + (int)VarRec->VarNum)) { // variable appeared on this step RelStep--; diff --git a/source/adios2/toolkit/format/bp5/BP5Serializer.cpp b/source/adios2/toolkit/format/bp5/BP5Serializer.cpp index af4c780cf3..dbe595093e 100644 --- a/source/adios2/toolkit/format/bp5/BP5Serializer.cpp +++ b/source/adios2/toolkit/format/bp5/BP5Serializer.cpp @@ -22,6 +22,9 @@ #ifdef _WIN32 #pragma warning(disable : 4250) #endif +#ifdef _MSC_VER +#define strdup(x) _strdup(x) +#endif namespace adios2 { @@ -121,7 +124,7 @@ void BP5Serializer::RecalcAttributeStorageSize() Info.AttributeData = realloc(Info.AttributeData, NewAttributeSize + 8); memset((char *)(Info.AttributeData) + Info.AttributeSize, 0, NewAttributeSize - Info.AttributeSize); - Info.AttributeSize = NewAttributeSize; + Info.AttributeSize = (int) NewAttributeSize; } } @@ -228,7 +231,7 @@ char *BP5Serializer::BuildVarName(const char *base_name, const ShapeID Shape, { const char *Prefix = NamePrefix(Shape); - int Len = strlen(base_name) + 2 + strlen(Prefix) + 16; + auto Len = strlen(base_name) + 2 + strlen(Prefix) + 16; char *Ret = (char *)malloc(Len); if (element_size == 0) { @@ -245,22 +248,22 @@ char *BP5Serializer::BuildVarName(const char *base_name, const ShapeID Shape, } static char *BuildLongName(const char *base_name, const ShapeID Shape, - const int type, const int element_size, + const int type, const size_t element_size, const char *StructID) { const char *Prefix = NamePrefix(Shape); - int StructIDLen = 0; + size_t StructIDLen = 0; if (StructID) StructIDLen = strlen(StructID); - int Len = strlen(base_name) + 3 + strlen(Prefix) + StructIDLen + 16; + size_t Len = strlen(base_name) + 3 + strlen(Prefix) + StructIDLen + 16; char *Ret = (char *)malloc(Len); if (StructID) { - snprintf(Ret, Len, "%s_%d_%d_%s", Prefix, element_size, type, StructID); + snprintf(Ret, Len, "%s_%zd_%d_%s", Prefix, element_size, type, StructID); } else { - snprintf(Ret, Len, "%s_%d_%d", Prefix, element_size, type); + snprintf(Ret, Len, "%s_%zd_%d", Prefix, element_size, type); } strcat(Ret, "_"); strcat(Ret, base_name); @@ -283,7 +286,7 @@ char *BP5Serializer::BuildArrayDimsName(const char *base_name, const int type, const int element_size) { const char *Prefix = NamePrefix(ShapeID::GlobalArray); - int Len = strlen(base_name) + 3 + strlen(Prefix) + 16; + size_t Len = strlen(base_name) + 3 + strlen(Prefix) + 16; char *Ret = (char *)malloc(Len); snprintf(Ret, Len, "%s%d_%d_", Prefix, element_size, type); strcat(Ret, base_name); @@ -296,7 +299,7 @@ char *BP5Serializer::BuildArrayDBCountName(const char *base_name, const int element_size) { const char *Prefix = NamePrefix(ShapeID::GlobalArray); - int Len = strlen(base_name) + 3 + strlen(Prefix) + 16; + size_t Len = strlen(base_name) + 3 + strlen(Prefix) + 16; char *Ret = (char *)malloc(Len); snprintf(Ret, Len, "%s%d_%d_", Prefix, element_size, type); strcat(Ret, base_name); @@ -309,7 +312,7 @@ char *BP5Serializer::BuildArrayBlockCountName(const char *base_name, const int element_size) { const char *Prefix = NamePrefix(ShapeID::GlobalArray); - int Len = strlen(base_name) + 3 + strlen(Prefix) + 24; + size_t Len = strlen(base_name) + 3 + strlen(Prefix) + 24; char *Ret = (char *)malloc(Len); snprintf(Ret, Len, "%s%d_%d_", Prefix, element_size, type); strcat(Ret, base_name); @@ -450,7 +453,7 @@ BP5Serializer::CreateWriterRec(void *Variable, const char *Name, DataType Type, Rec->Key = Variable; Rec->Shape = VB->m_ShapeID; Rec->FieldID = Info.RecCount; - Rec->DimCount = DimCount; + Rec->DimCount = (int)DimCount; Rec->Type = (int)Type; Rec->OperatorType = NULL; char *TextStructID = NULL; @@ -467,7 +470,7 @@ BP5Serializer::CreateWriterRec(void *Variable, const char *Name, DataType Type, List[i].field_name = strdup(SD->Name(i).c_str()); List[i].field_type = TranslateADIOS2Type2FFS(SD->Type(i)); List[i].field_size = TypeElementSize(SD->Type(i)); - List[i].field_offset = SD->Offset(i); + List[i].field_offset = (int)SD->Offset(i); if (SD->ElementCount(i) != 1) { size_t Len = strlen(List[i].field_type) + 10; @@ -487,7 +490,7 @@ BP5Serializer::CreateWriterRec(void *Variable, const char *Name, DataType Type, {NULL, NULL, 0, NULL}}; struct_list[0].format_name = strdup(SD->StructName().c_str()); struct_list[0].field_list = List; - struct_list[0].struct_size = SD->StructSize(); + struct_list[0].struct_size = (int)SD->StructSize(); FMFormat Format = register_data_format(Info.LocalFMContext, &struct_list[0]); @@ -508,7 +511,7 @@ BP5Serializer::CreateWriterRec(void *Variable, const char *Name, DataType Type, char *SstName = BuildVarName(Name, VB->m_ShapeID, 0, 0); // size and type in full field spec AddField(&Info.MetaFields, &Info.MetaFieldCount, SstName, Type, - ElemSize); + (int)ElemSize); free(SstName); RecalcMarshalStorageSize(); Rec->MetaOffset = Info.MetaFields[Info.MetaFieldCount - 1].field_offset; @@ -930,9 +933,9 @@ void BP5Serializer::MarshalAttribute(const char *Name, const DataType Type, { // simple field, only simple attribute name and value char *SstName = - BuildVarName(Name, ShapeID::GlobalValue, (int)Type, ElemSize); + BuildVarName(Name, ShapeID::GlobalValue, (int)Type, (int)ElemSize); AddField(&Info.AttributeFields, &Info.AttributeFieldCount, SstName, - Type, ElemSize); + Type, (int)ElemSize); free(SstName); RecalcAttributeStorageSize(); int DataOffset = @@ -952,7 +955,7 @@ void BP5Serializer::MarshalAttribute(const char *Name, const DataType Type, int CountOffset = Info.AttributeFields[Info.AttributeFieldCount - 1].field_offset; AddVarArrayField(&Info.AttributeFields, &Info.AttributeFieldCount, - ArrayName, Type, ElemSize, ElemCountName); + ArrayName, Type, (int)ElemSize, ElemCountName); int DataOffset = Info.AttributeFields[Info.AttributeFieldCount - 1].field_offset; free(ElemCountName); @@ -1102,7 +1105,7 @@ void BP5Serializer::ProcessDeferredMinMax() MetaArrayRecMM *MetaEntry = (MetaArrayRecMM *)((char *)(MetadataBuf) + Def.MetaOffset); void **MMPtrLoc = (void **)(((char *)MetaEntry) + Def.MinMaxOffset); - int ElemSize = helper::GetDataTypeSize(Def.Type); + auto ElemSize = helper::GetDataTypeSize(Def.Type); memcpy(((char *)*MMPtrLoc) + ElemSize * (2 * (Def.BlockNum)), &MinMax.MinUnion, ElemSize); diff --git a/testing/adios2/bindings/C/TestBPWriteTypes.cpp b/testing/adios2/bindings/C/TestBPWriteTypes.cpp index f684815686..fb6d4fa9b2 100644 --- a/testing/adios2/bindings/C/TestBPWriteTypes.cpp +++ b/testing/adios2/bindings/C/TestBPWriteTypes.cpp @@ -181,12 +181,7 @@ TEST_F(ADIOS2_C_API, ADIOS2BPWriteTypes) char *engineType = new char[engineTypeSize + 1](); adios2_engine_get_type(engineType, &engineTypeSize, engineH); -#if defined(_WIN64) || defined(_WIN32) - // default staying BP4 for now - EXPECT_EQ(std::string(engineType, engineTypeSize), "BP4Writer"); -#else EXPECT_EQ(std::string(engineType, engineTypeSize), "BP5Writer"); -#endif adios2_close(engineH); @@ -207,12 +202,7 @@ TEST_F(ADIOS2_C_API, ADIOS2BPWriteTypes) adios2_mode m; adios2_error e = adios2_engine_openmode(&m, engineH); EXPECT_EQ(e, adios2_error_none); -#if defined(_WIN64) || defined(_WIN32) - // default staying BP4 for now - EXPECT_EQ(m, adios2_mode_read); -#else EXPECT_EQ(m, adios2_mode_readRandomAccess); -#endif adios2_bool result; char name[30]; diff --git a/testing/adios2/interface/TestADIOSInterface.cpp b/testing/adios2/interface/TestADIOSInterface.cpp index b9f49f5ed3..ceaf41409b 100644 --- a/testing/adios2/interface/TestADIOSInterface.cpp +++ b/testing/adios2/interface/TestADIOSInterface.cpp @@ -129,14 +129,9 @@ TEST_F(ADIOS2_CXX11_API, APIToString) EXPECT_EQ(ToString(attribute), "Attribute(Name: \"attr_float\")"); auto engine = io.Open("test.bp", adios2::Mode::Write); -#if defined(_WIN64) || defined(_WIN32) - // default staying BP4 for now - EXPECT_EQ(ToString(engine), - "Engine(Name: \"test.bp\", Type: \"BP4Writer\")"); -#else + EXPECT_EQ(ToString(engine), "Engine(Name: \"test.bp\", Type: \"BP5Writer\")"); -#endif } TEST_F(ADIOS2_CXX11_API, operatorLL) @@ -163,12 +158,8 @@ TEST_F(ADIOS2_CXX11_API_IO, Engine) adios2::Engine engine = m_Io.Open("types.bp", adios2::Mode::Write); EXPECT_EQ(engine.Name(), "types.bp"); -#if defined(_WIN64) || defined(_WIN32) - // default staying BP4 for now - EXPECT_EQ(engine.Type(), "BP4Writer"); -#else EXPECT_EQ(engine.Type(), "BP5Writer"); -#endif + engine.Close(); } @@ -179,12 +170,7 @@ TEST_F(ADIOS2_CXX11_API_IO, EngineDefault) adios2::Engine engine = m_Io.Open("types.bp", adios2::Mode::Write); EXPECT_EQ(engine.Name(), "types.bp"); -#if defined(_WIN64) || defined(_WIN32) - // default staying BP4 for now - EXPECT_EQ(engine.Type(), "BP4Writer"); -#else EXPECT_EQ(engine.Type(), "BP5Writer"); -#endif engine.Close(); } From e08dba0420a59ee6403486360dd54a6c9b5e8dd7 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Sun, 2 Jul 2023 21:39:22 -0400 Subject: [PATCH 021/183] String fix and timeout --- source/adios2/core/Variable.tcc | 4 ++++ testing/adios2/engine/staging-common/TestSupp.cmake | 2 ++ 2 files changed, 6 insertions(+) diff --git a/source/adios2/core/Variable.tcc b/source/adios2/core/Variable.tcc index 9a641c3cef..884a00afe6 100644 --- a/source/adios2/core/Variable.tcc +++ b/source/adios2/core/Variable.tcc @@ -113,9 +113,13 @@ std::pair Variable::DoMinMax(const size_t step) const MinMaxStruct MM; if (m_Engine->VariableMinMax(*this, step, MM)) { + if (std::is_same::value) { + return minMax; + } else { minMax.first = *(T *)&MM.MinUnion; minMax.second = *(T *)&MM.MaxUnion; return minMax; + } } } if (m_Engine != nullptr && !m_FirstStreamingStep) diff --git a/testing/adios2/engine/staging-common/TestSupp.cmake b/testing/adios2/engine/staging-common/TestSupp.cmake index f0294aeded..24b71902b3 100644 --- a/testing/adios2/engine/staging-common/TestSupp.cmake +++ b/testing/adios2/engine/staging-common/TestSupp.cmake @@ -70,8 +70,10 @@ set (1x1GetSync_CMD "run_test.py.$ -nw 1 -nr 1 --rarg=--read_mode --rarg set (1x1DontCloseWriter_CMD "run_test.py.$ -nw 1 -nr 1 --warg=--dont_close") set (1x1DontCloseReader_CMD "run_test.py.$ -nw 1 -nr 1 --rarg=--dont_close") set (1x1DefSync_CMD "TestDefSyncWrite --data_size 200 --engine_params ChunkSize=500,MinDeferredSize=150") +set (1x1DefSync_TIMEOUT 180) set (1x1VarDestruction_CMD "run_test.py.$ -nw 1 -nr 1 --rarg=--var_destruction") set (1x1DataWrite_CMD "TestDefSyncWrite --flush --data_size 200 --engine_params ChunkSize=500,MinDeferredSize=150") +set (1x1DataWrite_TIMEOUT 180) set (1x1.NoPreload_CMD "run_test.py.$ -nw 1 -nr 1 --rarg=PreloadMode=SstPreloadNone,RENGINE_PARAMS") set (1x1.SstRUDP_CMD "run_test.py.$ -nw 1 -nr 1 --rarg=DataTransport=WAN,WANDataTransport=enet,RENGINE_PARAMS --warg=DataTransport=WAN,WANDataTransport=enet,WENGINE_PARAMS") set (1x1.NoData_CMD "run_test.py.$ -nw 1 -nr 1 --warg=--no_data --rarg=--no_data") From 6917bf9ecb481e60fb68a0d6e8385feb0fa4246d Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Wed, 10 May 2023 13:48:50 -0400 Subject: [PATCH 022/183] Fix memory leak when there are Joined Arrays in streaming mode --- source/adios2/toolkit/format/bp5/BP5Deserializer.cpp | 10 ++++++++-- source/adios2/toolkit/format/bp5/BP5Deserializer.h | 1 + 2 files changed, 9 insertions(+), 2 deletions(-) diff --git a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp index 17a0cc57d5..aed65d039f 100644 --- a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp +++ b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp @@ -708,7 +708,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, m_JoinedDimenOffsetArrays = new std::vector(); m_JoinedDimenOffsetArrays->resize(writerCohortSize); JoinedDimArray[Step] = m_JoinedDimenOffsetArrays; - m_FreeableMBA = nullptr; + m_FreeableJDOA = nullptr; } } else @@ -726,7 +726,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, if (!m_JoinedDimenOffsetArrays) { m_JoinedDimenOffsetArrays = new std::vector(); - m_FreeableMBA = m_JoinedDimenOffsetArrays; + m_FreeableJDOA = m_JoinedDimenOffsetArrays; } if (writerCohortSize > m_JoinedDimenOffsetArrays->size()) { @@ -2003,7 +2003,13 @@ BP5Deserializer::~BP5Deserializer() delete VarRec.second; } if (m_FreeableMBA) + { delete m_FreeableMBA; + } + if (m_FreeableJDOA) + { + delete m_FreeableJDOA; + } for (auto &step : MetadataBaseArray) { delete step; diff --git a/source/adios2/toolkit/format/bp5/BP5Deserializer.h b/source/adios2/toolkit/format/bp5/BP5Deserializer.h index b7f6e2e082..d1c932dc79 100644 --- a/source/adios2/toolkit/format/bp5/BP5Deserializer.h +++ b/source/adios2/toolkit/format/bp5/BP5Deserializer.h @@ -174,6 +174,7 @@ class BP5Deserializer : virtual public BP5Base std::vector *m_FreeableMBA = nullptr; std::vector *m_JoinedDimenOffsetArrays = nullptr; + std::vector *m_FreeableJDOA = nullptr; // for random access mode, for each timestep, for each writerrank, what // metameta info applies to the metadata From defc1c7f1dbba49d933e349057dd1f88d806d725 Mon Sep 17 00:00:00 2001 From: Vicente Bolea Date: Thu, 29 Jun 2023 12:54:16 -0400 Subject: [PATCH 023/183] Merge pull request #3673 from vicentebolea/disable-ascent-install-test ci,ascent: disable install tests (cherry picked from commit 9ee15a33a19f04c573f0a0661f93794d53f45e70) --- scripts/ci/cmake-v2/ci-ascent-common.cmake | 6 ++++++ scripts/ci/cmake-v2/ci-ascent-cuda.cmake | 5 +---- scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake | 5 +---- scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake | 5 +---- scripts/ci/cmake-v2/ci-ascent-xl.cmake | 2 +- 5 files changed, 10 insertions(+), 13 deletions(-) create mode 100644 scripts/ci/cmake-v2/ci-ascent-common.cmake diff --git a/scripts/ci/cmake-v2/ci-ascent-common.cmake b/scripts/ci/cmake-v2/ci-ascent-common.cmake new file mode 100644 index 0000000000..34b17c8634 --- /dev/null +++ b/scripts/ci/cmake-v2/ci-ascent-common.cmake @@ -0,0 +1,6 @@ +# Client maintainer: vicente.bolea@kitware.com + +set(CTEST_TEST_ARGS + PARALLEL_LEVEL 8 + EXCLUDE ".*/BPWRCUDA.ADIOS2BPCUDAWrong/.*BP4.Serial|.*/BPWRCUDA.ADIOS2BPCUDAMemSel/.*BP4.Serial|Engine.Staging.TestThreads.*|Install.*" + ) diff --git a/scripts/ci/cmake-v2/ci-ascent-cuda.cmake b/scripts/ci/cmake-v2/ci-ascent-cuda.cmake index 93febd6614..886c89926b 100644 --- a/scripts/ci/cmake-v2/ci-ascent-cuda.cmake +++ b/scripts/ci/cmake-v2/ci-ascent-cuda.cmake @@ -18,10 +18,7 @@ CMAKE_DISABLE_FIND_PACKAGE_FLEX=ON CMAKE_Fortran_FLAGS:STRING=-Wall ") -set(CTEST_TEST_ARGS - PARALLEL_LEVEL 8 - EXCLUDE ".*/BPWRCUDA.ADIOS2BPCUDAWrong/.*BP4.Serial|.*/BPWRCUDA.ADIOS2BPCUDAMemSel/.*BP4.Serial" - ) set(CTEST_CMAKE_GENERATOR "Ninja") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-ascent-common.cmake) include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake b/scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake index b906bed2e6..558c7f9a1d 100644 --- a/scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake +++ b/scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake @@ -23,10 +23,7 @@ CMAKE_DISABLE_FIND_PACKAGE_BISON=ON CMAKE_DISABLE_FIND_PACKAGE_FLEX=ON ") -set(CTEST_TEST_ARGS - PARALLEL_LEVEL 8 - EXCLUDE ".*/BPWRCUDA.ADIOS2BPCUDAWrong/.*BP4.Serial|.*/BPWRCUDA.ADIOS2BPCUDAMemSel/.*BP4.Serial|Engine.Staging.TestThreads.*" - ) set(CTEST_CMAKE_GENERATOR "Ninja") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-ascent-common.cmake) include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake b/scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake index c6aa75d3b9..6c2b9cf1f6 100644 --- a/scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake +++ b/scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake @@ -21,10 +21,7 @@ CMAKE_DISABLE_FIND_PACKAGE_FLEX=ON CMAKE_NINJA_FORCE_RESPONSE_FILE=OFF ") -set(CTEST_TEST_ARGS - PARALLEL_LEVEL 8 - EXCLUDE ".*/BPWRCUDA.ADIOS2BPCUDAWrong/.*BP4.Serial|.*/BPWRCUDA.ADIOS2BPCUDAMemSel/.*BP4.Serial|Install.*Fortran" - ) set(CTEST_CMAKE_GENERATOR "Unix Makefiles") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-ascent-common.cmake) include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-ascent-xl.cmake b/scripts/ci/cmake-v2/ci-ascent-xl.cmake index 9f73bab0de..2e974086b9 100644 --- a/scripts/ci/cmake-v2/ci-ascent-xl.cmake +++ b/scripts/ci/cmake-v2/ci-ascent-xl.cmake @@ -24,7 +24,7 @@ CMAKE_DISABLE_FIND_PACKAGE_FLEX=ON ") set(NCPUS 4) -set(CTEST_TEST_ARGS PARALLEL_LEVEL 8) set(CTEST_CMAKE_GENERATOR "Ninja") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-ascent-common.cmake) include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) From 43ae62cfdf7f44f8ddc84b633771a9e97aa18393 Mon Sep 17 00:00:00 2001 From: Vicente Bolea Date: Wed, 14 Jun 2023 11:29:17 -0400 Subject: [PATCH 024/183] Merge pull request #3650 from ornladios/dependabot/pip/docs/cryptography-41.0.0 Bump cryptography from 39.0.1 to 41.0.0 in /docs (cherry picked from commit fd3cb501e05474cbaf48badb41bae8f1a3668d7c) --- docs/requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/requirements.txt b/docs/requirements.txt index 4e74cf0aab..ab7566389f 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -7,7 +7,7 @@ certifi==2022.12.7 cffi==1.15.1 charset-normalizer==2.1.1 colorama==0.4.6 -cryptography==39.0.1 +cryptography==41.0.0 docutils==0.17 funcparserlib==1.0.1 idna==3.4 From af34a404e622a199025f694a84704bc4e39feeeb Mon Sep 17 00:00:00 2001 From: Junmin Gu Date: Mon, 5 Jun 2023 10:05:24 -0700 Subject: [PATCH 025/183] Merge pull request #3652 from guj/unistd-windows work around with include on windows (cherry picked from commit c6b1cca0ef8e44dbfaed48600063e09f32ed293d) --- source/h5vol/CMakeLists.txt | 12 ++++++++++++ source/h5vol/H5VolReadWrite.c | 7 +++++++ 2 files changed, 19 insertions(+) diff --git a/source/h5vol/CMakeLists.txt b/source/h5vol/CMakeLists.txt index c94593a70e..e8c2ce4461 100644 --- a/source/h5vol/CMakeLists.txt +++ b/source/h5vol/CMakeLists.txt @@ -9,6 +9,18 @@ if(CMAKE_C_COMPILER_ID MATCHES "^(GNU)$") string(APPEND CMAKE_C_FLAGS " -Wno-format-zero-length") endif() +include(CheckIncludeFiles) +check_include_files(unistd.h HAVE_UNISTD_H) +check_include_files(windows.h HAVE_WINDOWS_H) + +if (HAVE_UNISTD_H) + add_definitions(-DHAVE_UNISTD_H) +endif() + +if (HAVE_WINDOWS_H) + add_definitions(-DHAVE_WINDOWS_H) +endif() + add_library(adios2_h5vol H5VolReadWrite.c H5Vol.c diff --git a/source/h5vol/H5VolReadWrite.c b/source/h5vol/H5VolReadWrite.c index f049d9ad85..5633eaf03d 100644 --- a/source/h5vol/H5VolReadWrite.c +++ b/source/h5vol/H5VolReadWrite.c @@ -16,7 +16,14 @@ #include "H5VolReadWrite.h" #include "H5VolUtil.h" + +#ifdef HAVE_UNISTD_H #include // sleep +#elif defined HAVE_WINDOWS_H +#include +#define sleep(x) Sleep(1000 * (x)) +#endif + // these are in h5private.h #define SUCCEED 1 #define FAIL 0 From ce73176881354c77a0b7aca1aabddcad15b29470 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Mon, 3 Jul 2023 13:55:04 -0400 Subject: [PATCH 026/183] Merge pull request #3684 from eisenhauer/FixLeak Fix memory leak when there are Joined Arrays in streaming mode (cherry picked from commit 68b282cbb023e037d3cbdaed57aa7de28b2c7650) --- source/adios2/toolkit/format/bp5/BP5Deserializer.cpp | 10 ++++++++-- source/adios2/toolkit/format/bp5/BP5Deserializer.h | 1 + 2 files changed, 9 insertions(+), 2 deletions(-) diff --git a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp index 9a0c98c432..863d619685 100644 --- a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp +++ b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp @@ -707,7 +707,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, m_JoinedDimenOffsetArrays = new std::vector(); m_JoinedDimenOffsetArrays->resize(writerCohortSize); JoinedDimArray[Step] = m_JoinedDimenOffsetArrays; - m_FreeableMBA = nullptr; + m_FreeableJDOA = nullptr; } } else @@ -725,7 +725,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, if (!m_JoinedDimenOffsetArrays) { m_JoinedDimenOffsetArrays = new std::vector(); - m_FreeableMBA = m_JoinedDimenOffsetArrays; + m_FreeableJDOA = m_JoinedDimenOffsetArrays; } if (writerCohortSize > m_JoinedDimenOffsetArrays->size()) { @@ -2001,7 +2001,13 @@ BP5Deserializer::~BP5Deserializer() delete VarRec.second; } if (m_FreeableMBA) + { delete m_FreeableMBA; + } + if (m_FreeableJDOA) + { + delete m_FreeableJDOA; + } for (auto &step : MetadataBaseArray) { delete step; diff --git a/source/adios2/toolkit/format/bp5/BP5Deserializer.h b/source/adios2/toolkit/format/bp5/BP5Deserializer.h index b7f6e2e082..798108678b 100644 --- a/source/adios2/toolkit/format/bp5/BP5Deserializer.h +++ b/source/adios2/toolkit/format/bp5/BP5Deserializer.h @@ -250,6 +250,7 @@ class BP5Deserializer : virtual public BP5Base /* We assume operators are not thread-safe, call Decompress() one at a time */ std::mutex mutexDecompress; + std::vector *m_FreeableJDOA = nullptr; }; } // end namespace format From 55dc9b2ee9c8b6f7103323675c5f4afd3ab84861 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Thu, 8 Jun 2023 15:44:17 -0400 Subject: [PATCH 027/183] Merge pull request #3657 from eisenhauer/SpanAppend Allow Span in files opened for Append (cherry picked from commit 7bd34be6afc1ade32eae110bee383ee8cc5f67df) --- source/adios2/core/Engine.tcc | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/source/adios2/core/Engine.tcc b/source/adios2/core/Engine.tcc index c8df4013aa..19c80601a5 100644 --- a/source/adios2/core/Engine.tcc +++ b/source/adios2/core/Engine.tcc @@ -27,8 +27,9 @@ template typename Variable::Span &Engine::Put(Variable &variable, const bool initialize, const T &value) { - CheckOpenModes({{Mode::Write}}, " for variable " + variable.m_Name + - ", in call to Variable::Span Put"); + CheckOpenModes({{Mode::Write, Mode::Append}}, + " for variable " + variable.m_Name + + ", in call to Variable::Span Put"); if (!variable.m_Operations.empty()) { helper::Throw( From 93188698cee7e0221fcfe934426a60329f7db45b Mon Sep 17 00:00:00 2001 From: Dmitry Ganyushin Date: Tue, 4 Jul 2023 11:56:24 -0400 Subject: [PATCH 028/183] Fix for the issue #3646. It looks like the default for macos and python 3.8+ "spawn" method does not work on macos, swith to "fork" for all situations. https://bugs.python.org/issue33725. Rebased on the current master. --- testing/adios2/engine/dataman/TestDataMan1D.py | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/testing/adios2/engine/dataman/TestDataMan1D.py b/testing/adios2/engine/dataman/TestDataMan1D.py index 8b8aac928f..016b496fa8 100644 --- a/testing/adios2/engine/dataman/TestDataMan1D.py +++ b/testing/adios2/engine/dataman/TestDataMan1D.py @@ -6,7 +6,7 @@ # TestDataMan1D.py: test for 1D data transfer by reading in Python # Created on: March 3, 2023 # Author: Dmitry Ganyushin ganyushindi@ornl.gov -from multiprocessing import Process +import multiprocessing import unittest import numpy as np import adios2 @@ -28,8 +28,8 @@ def setUp(self): def test_run(self): - s = Process(target=self.thread_send) - r = Process(target=self.thread_receive) + s = multiprocessing.Process(target=self.thread_send) + r = multiprocessing.Process(target=self.thread_receive) s.start() r.start() @@ -88,4 +88,5 @@ def thread_receive(self): if __name__ == '__main__': + multiprocessing.set_start_method("fork") unittest.main() From 2521a38a07349e6e7f8e345fa3b3fa2e69ecbc29 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Mon, 10 Jul 2023 15:54:47 -0400 Subject: [PATCH 029/183] cmake,evpath: namespace modules install dir --- thirdparty/EVPath/CMakeLists.txt | 1 + 1 file changed, 1 insertion(+) diff --git a/thirdparty/EVPath/CMakeLists.txt b/thirdparty/EVPath/CMakeLists.txt index 27fb73c742..2029fbeffc 100644 --- a/thirdparty/EVPath/CMakeLists.txt +++ b/thirdparty/EVPath/CMakeLists.txt @@ -6,6 +6,7 @@ set(CMAKE_INSTALL_CMAKEDIR "${CMAKE_INSTALL_CMAKEDIR}/thirdparty") set(EVPATH_LIBRARY_PREFIX adios2${ADIOS2_LIBRARY_SUFFIX}_ CACHE INTERNAL "") set(EVPATH_QUIET ON CACHE INTERNAL "") set(EVPATH_INSTALL_HEADERS OFF CACHE INTERNAL "") +set(EVPATH_INSTALL_MODULE_DIR "${CMAKE_INSTALL_LIBDIR}/adios2_evpath_modules" CACHE INTERNAL "") set(EVPATH_INSTALL_PKGCONFIG OFF CACHE INTERNAL "") set(EVPATH_NO_RDMA ON CACHE INTERNAL "") set(EVPATH_USE_UDT4 OFF CACHE INTERNAL "") From 622d7bff29121a5e71ae0bfb86739976db0a5baa Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Mon, 10 Jul 2023 18:40:31 -0400 Subject: [PATCH 030/183] Merge pull request #3689 from vicentebolea/fix-evpath-modules cmake,evpath: namespace modules install dir (cherry picked from commit 73846790079480575db32d8f99ee9989b423f4e3) --- thirdparty/EVPath/CMakeLists.txt | 1 + 1 file changed, 1 insertion(+) diff --git a/thirdparty/EVPath/CMakeLists.txt b/thirdparty/EVPath/CMakeLists.txt index fbf8369ced..6da6a2b028 100644 --- a/thirdparty/EVPath/CMakeLists.txt +++ b/thirdparty/EVPath/CMakeLists.txt @@ -6,6 +6,7 @@ set(CMAKE_INSTALL_CMAKEDIR "${CMAKE_INSTALL_CMAKEDIR}/thirdparty") set(EVPATH_LIBRARY_PREFIX adios2${ADIOS2_LIBRARY_SUFFIX}_ CACHE INTERNAL "") set(EVPATH_QUIET ON CACHE INTERNAL "") set(EVPATH_INSTALL_HEADERS OFF CACHE INTERNAL "") +set(EVPATH_INSTALL_MODULE_DIR "${CMAKE_INSTALL_LIBDIR}/adios2_evpath_modules" CACHE INTERNAL "") set(EVPATH_INSTALL_PKGCONFIG OFF CACHE INTERNAL "") set(EVPATH_NO_RDMA ON CACHE INTERNAL "") set(EVPATH_USE_UDT4 OFF CACHE INTERNAL "") From 008b51629195297a286859d1c0d41a3869df9767 Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Fri, 7 Jul 2023 17:00:51 -0600 Subject: [PATCH 031/183] ci: Rework gcc/clang/intel builds --- .github/workflows/everything.yml | 75 +++++++--- .shellcheck_exclude_paths | 21 +-- scripts/ci/cmake-v2/ci-el8-gcc8-serial.cmake | 27 ---- ...l8-icc-mpi.cmake => ci-el8-icc-ompi.cmake} | 13 +- scripts/ci/cmake-v2/ci-el8-icc-serial.cmake | 15 +- .../cmake-v2/ci-el8-kokkoscuda-serial.cmake | 26 ---- scripts/ci/cmake-v2/ci-el8-nvhpc222-mpi.cmake | 35 ----- .../ci/cmake-v2/ci-el8-nvhpc222-serial.cmake | 28 ---- ...api-mpi.cmake => ci-el8-oneapi-ompi.cmake} | 12 +- .../ci/cmake-v2/ci-el8-oneapi-serial.cmake | 12 +- .../ci-ubuntu20.04-clang10-ompi.cmake | 40 ++++++ .../ci-ubuntu20.04-clang10-serial.cmake | 33 +++++ .../cmake-v2/ci-ubuntu20.04-clang6-ompi.cmake | 40 ++++++ .../ci-ubuntu20.04-clang6-serial.cmake | 33 +++++ ...cmake => ci-ubuntu20.04-gcc10-mpich.cmake} | 11 +- ....cmake => ci-ubuntu20.04-gcc10-ompi.cmake} | 11 +- ...make => ci-ubuntu20.04-gcc10-serial.cmake} | 11 +- ....cmake => ci-ubuntu20.04-gcc11-ompi.cmake} | 11 +- ...make => ci-ubuntu20.04-gcc11-serial.cmake} | 11 +- ...i.cmake => ci-ubuntu20.04-gcc8-ompi.cmake} | 11 +- ...cmake => ci-ubuntu20.04-gcc8-serial.cmake} | 11 +- ...i.cmake => ci-ubuntu20.04-gcc9-ompi.cmake} | 14 +- ...cmake => ci-ubuntu20.04-gcc9-serial.cmake} | 15 +- ...mpi.cmake => ci-win2019-vs2019-ompi.cmake} | 2 - .../cmake-v2/ci-win2019-vs2019-serial.cmake | 2 - ...mpi.cmake => ci-win2022-vs2022-ompi.cmake} | 2 - .../cmake-v2/ci-win2022-vs2022-serial.cmake | 2 - scripts/ci/gh-actions/macos-setup.sh | 2 +- scripts/ci/gh-actions/run.sh | 2 +- scripts/ci/gh-actions/windows-setup.ps1 | 2 +- .../ci/images-v2/0001-spack-rhel-fix.patch | 11 -- .../0002-spack-libcatalyst-git.patch | 33 ----- scripts/ci/images-v2/Dockerfile.ci-el8-intel | 80 +++++++++++ .../ci/images-v2/Dockerfile.ci-spack-el8-base | 31 ---- .../Dockerfile.ci-spack-el8-clang13-base | 45 ------ .../Dockerfile.ci-spack-el8-cuda-base | 14 -- .../Dockerfile.ci-spack-el8-gcc10-base | 17 --- .../Dockerfile.ci-spack-el8-gcc11-base | 17 --- .../Dockerfile.ci-spack-el8-gcc8-base | 12 -- .../Dockerfile.ci-spack-el8-gcc9-base | 17 --- .../Dockerfile.ci-spack-el8-icc-base | 14 -- .../Dockerfile.ci-spack-el8-intel-base | 13 -- .../ci/images-v2/Dockerfile.ci-spack-el8-leaf | 62 -------- .../Dockerfile.ci-spack-el8-nvhpc222-leaf | 38 ----- .../Dockerfile.ci-spack-el8-oneapi-base | 9 -- .../Dockerfile.ci-spack-ubuntu20.04-base | 52 +++++++ .../Dockerfile.ci-spack-ubuntu20.04-clang | 6 + .../Dockerfile.ci-spack-ubuntu20.04-gcc | 11 ++ .../Dockerfile.ci-spack-ubuntu20.04-intel | 13 ++ scripts/ci/images-v2/build-base.sh | 14 -- scripts/ci/images-v2/build-clang-base.sh | 15 -- scripts/ci/images-v2/build-clang.sh | 8 -- scripts/ci/images-v2/build-cuda.sh | 30 ---- scripts/ci/images-v2/build-el8.sh | 15 ++ scripts/ci/images-v2/build-functions.sh | 73 ---------- scripts/ci/images-v2/build-gcc-base.sh | 18 --- scripts/ci/images-v2/build-gcc.sh | 35 ----- scripts/ci/images-v2/build-intel-base.sh | 36 ----- scripts/ci/images-v2/build-intel.sh | 13 -- scripts/ci/images-v2/build-mpich.sh | 20 --- scripts/ci/images-v2/build-nvhpc.sh | 25 ---- scripts/ci/images-v2/build-ubuntu.sh | 34 +++++ scripts/ci/images-v2/build.sh | 135 ------------------ scripts/ci/images-v2/gcc-toolset-module.tcl | 10 -- scripts/ci/images-v2/modules.yaml | 10 -- scripts/ci/images-v2/packages.yaml | 7 + scripts/ci/images-v2/packages.yaml.in | 16 --- scripts/ci/images-v2/specs.yaml | 6 + scripts/ci/images-v2/specs.yaml.in | 15 -- scripts/ci/setup-run/ci-el8-gcc10.sh | 1 - scripts/ci/setup-run/ci-el8-gcc11.sh | 1 - scripts/ci/setup-run/ci-el8-gcc9.sh | 1 - scripts/ci/setup-run/ci-el8-icc.sh | 2 + scripts/ci/setup-run/ci-el8-nvhpc222-mpi.sh | 2 - scripts/ci/setup-run/ci-el8-nvhpc222.sh | 1 - scripts/ci/setup-run/ci-el8-oneapi.sh | 2 + .../ci/setup-run/ci-ubuntu20.04-clang10.sh | 3 + scripts/ci/setup-run/ci-ubuntu20.04-clang6.sh | 3 + scripts/ci/setup-run/ci-ubuntu20.04-gcc10.sh | 7 + scripts/ci/setup-run/ci-ubuntu20.04-gcc11.sh | 7 + scripts/ci/setup-run/ci-ubuntu20.04-gcc8.sh | 7 + scripts/ci/setup-run/ci-ubuntu20.04-gcc9.sh | 7 + 82 files changed, 578 insertions(+), 1026 deletions(-) delete mode 100644 scripts/ci/cmake-v2/ci-el8-gcc8-serial.cmake rename scripts/ci/cmake-v2/{ci-el8-icc-mpi.cmake => ci-el8-icc-ompi.cmake} (74%) delete mode 100644 scripts/ci/cmake-v2/ci-el8-kokkoscuda-serial.cmake delete mode 100644 scripts/ci/cmake-v2/ci-el8-nvhpc222-mpi.cmake delete mode 100644 scripts/ci/cmake-v2/ci-el8-nvhpc222-serial.cmake rename scripts/ci/cmake-v2/{ci-el8-oneapi-mpi.cmake => ci-el8-oneapi-ompi.cmake} (79%) create mode 100644 scripts/ci/cmake-v2/ci-ubuntu20.04-clang10-ompi.cmake create mode 100644 scripts/ci/cmake-v2/ci-ubuntu20.04-clang10-serial.cmake create mode 100644 scripts/ci/cmake-v2/ci-ubuntu20.04-clang6-ompi.cmake create mode 100644 scripts/ci/cmake-v2/ci-ubuntu20.04-clang6-serial.cmake rename scripts/ci/cmake-v2/{ci-el8-gcc10-mpich.cmake => ci-ubuntu20.04-gcc10-mpich.cmake} (75%) rename scripts/ci/cmake-v2/{ci-el8-gcc11-mpi.cmake => ci-ubuntu20.04-gcc10-ompi.cmake} (77%) rename scripts/ci/cmake-v2/{ci-el8-gcc11-serial.cmake => ci-ubuntu20.04-gcc10-serial.cmake} (72%) rename scripts/ci/cmake-v2/{ci-el8-gcc10-mpi.cmake => ci-ubuntu20.04-gcc11-ompi.cmake} (77%) rename scripts/ci/cmake-v2/{ci-el8-gcc9-serial.cmake => ci-ubuntu20.04-gcc11-serial.cmake} (72%) rename scripts/ci/cmake-v2/{ci-el8-gcc9-mpi.cmake => ci-ubuntu20.04-gcc8-ompi.cmake} (77%) rename scripts/ci/cmake-v2/{ci-el8-gcc10-serial.cmake => ci-ubuntu20.04-gcc8-serial.cmake} (72%) rename scripts/ci/cmake-v2/{ci-el8-gcc8-mpi.cmake => ci-ubuntu20.04-gcc9-ompi.cmake} (73%) rename scripts/ci/cmake-v2/{ci-el8-cuda-serial.cmake => ci-ubuntu20.04-gcc9-serial.cmake} (72%) rename scripts/ci/cmake-v2/{ci-win2019-vs2019-mpi.cmake => ci-win2019-vs2019-ompi.cmake} (88%) rename scripts/ci/cmake-v2/{ci-win2022-vs2022-mpi.cmake => ci-win2022-vs2022-ompi.cmake} (88%) delete mode 100644 scripts/ci/images-v2/0001-spack-rhel-fix.patch delete mode 100644 scripts/ci/images-v2/0002-spack-libcatalyst-git.patch create mode 100644 scripts/ci/images-v2/Dockerfile.ci-el8-intel delete mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-el8-base delete mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-el8-clang13-base delete mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-el8-cuda-base delete mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc10-base delete mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc11-base delete mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc8-base delete mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc9-base delete mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-el8-icc-base delete mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-el8-intel-base delete mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-el8-leaf delete mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-el8-nvhpc222-leaf delete mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-el8-oneapi-base create mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-base create mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-clang create mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-gcc create mode 100644 scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-intel delete mode 100755 scripts/ci/images-v2/build-base.sh delete mode 100755 scripts/ci/images-v2/build-clang-base.sh delete mode 100755 scripts/ci/images-v2/build-clang.sh delete mode 100755 scripts/ci/images-v2/build-cuda.sh create mode 100755 scripts/ci/images-v2/build-el8.sh delete mode 100644 scripts/ci/images-v2/build-functions.sh delete mode 100755 scripts/ci/images-v2/build-gcc-base.sh delete mode 100755 scripts/ci/images-v2/build-gcc.sh delete mode 100755 scripts/ci/images-v2/build-intel-base.sh delete mode 100755 scripts/ci/images-v2/build-intel.sh delete mode 100755 scripts/ci/images-v2/build-mpich.sh delete mode 100755 scripts/ci/images-v2/build-nvhpc.sh create mode 100755 scripts/ci/images-v2/build-ubuntu.sh delete mode 100755 scripts/ci/images-v2/build.sh delete mode 100644 scripts/ci/images-v2/gcc-toolset-module.tcl delete mode 100644 scripts/ci/images-v2/modules.yaml create mode 100644 scripts/ci/images-v2/packages.yaml delete mode 100644 scripts/ci/images-v2/packages.yaml.in create mode 100644 scripts/ci/images-v2/specs.yaml delete mode 100644 scripts/ci/images-v2/specs.yaml.in delete mode 100644 scripts/ci/setup-run/ci-el8-gcc10.sh delete mode 100644 scripts/ci/setup-run/ci-el8-gcc11.sh delete mode 100644 scripts/ci/setup-run/ci-el8-gcc9.sh delete mode 100644 scripts/ci/setup-run/ci-el8-nvhpc222-mpi.sh delete mode 100644 scripts/ci/setup-run/ci-el8-nvhpc222.sh create mode 100644 scripts/ci/setup-run/ci-ubuntu20.04-clang10.sh create mode 100644 scripts/ci/setup-run/ci-ubuntu20.04-clang6.sh create mode 100644 scripts/ci/setup-run/ci-ubuntu20.04-gcc10.sh create mode 100644 scripts/ci/setup-run/ci-ubuntu20.04-gcc11.sh create mode 100644 scripts/ci/setup-run/ci-ubuntu20.04-gcc8.sh create mode 100644 scripts/ci/setup-run/ci-ubuntu20.04-gcc9.sh diff --git a/.github/workflows/everything.yml b/.github/workflows/everything.yml index 7447ed908a..222082c4ab 100644 --- a/.github/workflows/everything.yml +++ b/.github/workflows/everything.yml @@ -91,13 +91,13 @@ jobs: # Build and test jobs ####################################### - linux: + linux_ubuntu: needs: [format, git_checks] if: needs.git_checks.outputs.num_code_changes > 0 - runs-on: ubuntu-latest + runs-on: ubuntu-20.04 container: - image: ornladios/adios2:ci-spack-el8-${{ matrix.compiler }}-${{ matrix.parallel }} + image: ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-${{ matrix.compiler }} options: --shm-size=1g env: GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.gpu_backend }}${{ matrix.compiler }}-${{ matrix.parallel }} @@ -109,22 +109,60 @@ jobs: strategy: fail-fast: false matrix: - os: [el8] - compiler: [gcc8, gcc9, gcc10, gcc11, icc, oneapi, nvhpc222] - parallel: [serial, mpi] + os: [ubuntu20.04] + compiler: [gcc8, gcc9, gcc10, gcc11, clang6, clang10] + parallel: [ompi] include: - - os: el8 - compiler: cuda - parallel: serial - constrains: build_only - - os: el8 - compiler: cuda - parallel: serial - gpu_backend: kokkos - constrains: build_only - - os: el8 + - os: ubuntu20.04 compiler: gcc10 parallel: mpich + - os: ubuntu20.04 + compiler: gcc8 + parallel: serial + - os: ubuntu20.04 + compiler: clang6 + parallel: serial + + steps: + - uses: actions/checkout@v3 + with: + path: gha + - uses: actions/checkout@v3 + with: + ref: ${{ github.event.pull_request.head.sha }} + path: source + - name: Setup + run: gha/scripts/ci/gh-actions/linux-setup.sh + - name: Update + run: gha/scripts/ci/gh-actions/run.sh update + - name: Configure + run: gha/scripts/ci/gh-actions/run.sh configure + - name: Build + run: gha/scripts/ci/gh-actions/run.sh build + - name: Test + run: gha/scripts/ci/gh-actions/run.sh test + + linux_el8: + needs: [format, git_checks] + if: needs.git_checks.outputs.num_code_changes > 0 + + runs-on: ubuntu-latest + container: + image: ghcr.io/ornladios/adios2:ci-el8-${{ matrix.compiler }} + options: --shm-size=1g + env: + GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.gpu_backend }}${{ matrix.compiler }}-${{ matrix.parallel }} + GH_YML_BASE_OS: Linux + GH_YML_MATRIX_OS: ${{ matrix.os }} + GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} + GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} + + strategy: + fail-fast: false + matrix: + os: [el8] + compiler: [icc, oneapi] + parallel: [ompi] steps: - uses: actions/checkout@v3 @@ -143,7 +181,6 @@ jobs: - name: Build run: gha/scripts/ci/gh-actions/run.sh build - name: Test - if: ${{ matrix.constrains != 'build_only' }} run: gha/scripts/ci/gh-actions/run.sh test macos: @@ -207,7 +244,7 @@ jobs: fail-fast: false matrix: os: [win2019, win2022] - parallel: [serial, mpi] + parallel: [serial, ompi] include: - os: win2019 image: windows-2019 @@ -370,7 +407,7 @@ jobs: ####################################### build_and_test: - needs: [linux, macos, docker, contract] + needs: [linux_el8, linux_ubuntu, macos, docker, contract] runs-on: ubuntu-latest steps: - run: echo "All required jobs complete" diff --git a/.shellcheck_exclude_paths b/.shellcheck_exclude_paths index 81763742e8..43d3930073 100644 --- a/.shellcheck_exclude_paths +++ b/.shellcheck_exclude_paths @@ -8,18 +8,8 @@ scripts/ci/gh-actions/get-changed-files.sh scripts/ci/gh-actions/linux-setup.sh scripts/ci/gh-actions/macos-setup.sh scripts/ci/gh-actions/run.sh -scripts/ci/images-v2/build-base.sh -scripts/ci/images-v2/build-clang-base.sh -scripts/ci/images-v2/build-clang.sh -scripts/ci/images-v2/build-cuda.sh -scripts/ci/images-v2/build-functions.sh -scripts/ci/images-v2/build-gcc-base.sh -scripts/ci/images-v2/build-gcc.sh -scripts/ci/images-v2/build-intel-base.sh -scripts/ci/images-v2/build-intel.sh -scripts/ci/images-v2/build-mpich.sh -scripts/ci/images-v2/build-nvhpc.sh -scripts/ci/images-v2/build.sh +scripts/ci/images-v2/build-el8.sh +scripts/ci/images-v2/build-ubuntu.sh scripts/ci/images/build-native-images.sh scripts/ci/images/emu-el7/entrypoint.sh scripts/ci/images/emu-el7/qemu-binfmt-conf.sh @@ -27,13 +17,6 @@ scripts/ci/images/emu-el7/register.sh scripts/ci/scripts/github-prs-to-gitlab.sh scripts/ci/scripts/run-clang-format.sh scripts/ci/scripts/run-flake8.sh -scripts/ci/setup-run/ci-el8-gcc10.sh -scripts/ci/setup-run/ci-el8-gcc11.sh -scripts/ci/setup-run/ci-el8-gcc9.sh -scripts/ci/setup-run/ci-el8-icc.sh -scripts/ci/setup-run/ci-el8-nvhpc222-mpi.sh -scripts/ci/setup-run/ci-el8-nvhpc222.sh -scripts/ci/setup-run/ci-el8-oneapi.sh scripts/dashboard/nightly/aaargh.sh scripts/dashboard/nightly/cori.sh scripts/dashboard/nightly/summitdev.sh diff --git a/scripts/ci/cmake-v2/ci-el8-gcc8-serial.cmake b/scripts/ci/cmake-v2/ci-el8-gcc8-serial.cmake deleted file mode 100644 index 78b7ef0698..0000000000 --- a/scripts/ci/cmake-v2/ci-el8-gcc8-serial.cmake +++ /dev/null @@ -1,27 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -set(ENV{CC} gcc) -set(ENV{CXX} g++) -set(ENV{FC} gfortran) - -set(dashboard_cache " -ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=ON -ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=ON -ADIOS2_USE_MPI:BOOL=OFF -ADIOS2_USE_Python:BOOL=ON -ADIOS2_USE_SZ:BOOL=ON -ADIOS2_USE_ZeroMQ:STRING=ON -ADIOS2_USE_ZFP:BOOL=ON - -CMAKE_C_FLAGS:STRING=-Wall -CMAKE_CXX_FLAGS:STRING=-Wall -CMAKE_Fortran_FLAGS:STRING=-Wall -") - -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-el8-icc-mpi.cmake b/scripts/ci/cmake-v2/ci-el8-icc-ompi.cmake similarity index 74% rename from scripts/ci/cmake-v2/ci-el8-icc-mpi.cmake rename to scripts/ci/cmake-v2/ci-el8-icc-ompi.cmake index 07eb6b0778..8780804c15 100644 --- a/scripts/ci/cmake-v2/ci-el8-icc-mpi.cmake +++ b/scripts/ci/cmake-v2/ci-el8-icc-ompi.cmake @@ -1,5 +1,3 @@ -# Client maintainer: chuck.atkins@kitware.com - include(ProcessorCount) ProcessorCount(NCPUS) math(EXPR N2CPUS "${NCPUS}*2") @@ -12,7 +10,8 @@ set(dashboard_cache " ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_Blosc:BOOL=ON ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON +ADIOS2_USE_DataSpaces:BOOL=OFF +ADIOS2_USE_Fortran:BOOL=OFF ADIOS2_USE_HDF5:BOOL=ON ADIOS2_USE_MPI:BOOL=ON ADIOS2_USE_Python:BOOL=ON @@ -20,15 +19,15 @@ ADIOS2_USE_SZ:BOOL=ON ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON -CMAKE_C_FLAGS:STRING=-Wall -CMAKE_CXX_FLAGS:STRING=-Wall -CMAKE_Fortran_FLAGS:STRING=-warn all -stand none +CMAKE_C_FLAGS:STRING=-Wall -diag-disable=10441 +CMAKE_C_FLAGS_DEBUG:STRING=-g -O0 +CMAKE_CXX_FLAGS:STRING=-Wall -diag-disable=10441 +CMAKE_CXX_FLAGS_DEBUG:STRING=-g -O0 MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} ") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) set(CTEST_CMAKE_GENERATOR "Unix Makefiles") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-el8-icc-serial.cmake b/scripts/ci/cmake-v2/ci-el8-icc-serial.cmake index 84ba5d999e..3aa93d3da6 100644 --- a/scripts/ci/cmake-v2/ci-el8-icc-serial.cmake +++ b/scripts/ci/cmake-v2/ci-el8-icc-serial.cmake @@ -1,14 +1,13 @@ -# Client maintainer: chuck.atkins@kitware.com - set(ENV{CC} icc) set(ENV{CXX} icpc) set(ENV{FC} ifort) set(dashboard_cache " ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=ON +ADIOS2_USE_Blosc:BOOL=OFF ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON +ADIOS2_USE_DataSpaces:BOOL=OFF +ADIOS2_USE_Fortran:BOOL=OFF ADIOS2_USE_HDF5:BOOL=ON ADIOS2_USE_MPI:BOOL=OFF ADIOS2_USE_Python:BOOL=ON @@ -16,12 +15,12 @@ ADIOS2_USE_SZ:BOOL=ON ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON -CMAKE_C_FLAGS:STRING=-Wall -CMAKE_CXX_FLAGS:STRING=-Wall -CMAKE_Fortran_FLAGS:STRING=-warn all -stand none +CMAKE_C_FLAGS:STRING=-Wall -diag-disable=10441 +CMAKE_C_FLAGS_DEBUG:STRING=-g -O0 +CMAKE_CXX_FLAGS:STRING=-Wall -diag-disable=10441 +CMAKE_CXX_FLAGS_DEBUG:STRING=-g -O0 ") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) set(CTEST_CMAKE_GENERATOR "Unix Makefiles") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-el8-kokkoscuda-serial.cmake b/scripts/ci/cmake-v2/ci-el8-kokkoscuda-serial.cmake deleted file mode 100644 index d80a0c72bb..0000000000 --- a/scripts/ci/cmake-v2/ci-el8-kokkoscuda-serial.cmake +++ /dev/null @@ -1,26 +0,0 @@ -# Client maintainer: vicente.bolea@kitware.com - -set(ENV{CC} gcc) -set(ENV{CXX} g++) -set(ENV{FC} gfortran) - -set(dashboard_cache " -ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=ON -ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=ON -ADIOS2_USE_Python:BOOL=ON -ADIOS2_USE_SZ:BOOL=ON -ADIOS2_USE_ZeroMQ:STRING=ON -ADIOS2_USE_ZFP:BOOL=ON -ADIOS2_USE_Kokkos:BOOL=ON -ADIOS2_USE_MPI:BOOL=OFF -CMAKE_C_FLAGS:STRING=-Wall -CMAKE_CXX_FLAGS:STRING=-Wall -CMAKE_Fortran_FLAGS:STRING=-Wall -") - -set(CTEST_CMAKE_GENERATOR "Ninja") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-el8-nvhpc222-mpi.cmake b/scripts/ci/cmake-v2/ci-el8-nvhpc222-mpi.cmake deleted file mode 100644 index 3edb330aed..0000000000 --- a/scripts/ci/cmake-v2/ci-el8-nvhpc222-mpi.cmake +++ /dev/null @@ -1,35 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -include(ProcessorCount) -ProcessorCount(NCPUS) -math(EXPR N2CPUS "${NCPUS}*2") - -set(ENV{CC} nvc) -set(ENV{CXX} nvc++) -set(ENV{FC} nvfortran) - -set(dashboard_cache " -ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=ON -ADIOS2_USE_CUDA:BOOL=OFF -ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=ON -ADIOS2_USE_MPI:BOOL=ON -ADIOS2_USE_Python:BOOL=OFF -ADIOS2_USE_SZ:BOOL=ON -ADIOS2_USE_ZeroMQ:STRING=ON -ADIOS2_USE_ZFP:BOOL=ON - -#CMAKE_C_FLAGS:STRING=-Werror -CMAKE_CXX_FLAGS:STRING=--brief_diagnostics -#CMAKE_Fortran_FLAGS:STRING=-warn errors - -MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe -MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} -") - -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-el8-nvhpc222-serial.cmake b/scripts/ci/cmake-v2/ci-el8-nvhpc222-serial.cmake deleted file mode 100644 index 3e7f97f5a8..0000000000 --- a/scripts/ci/cmake-v2/ci-el8-nvhpc222-serial.cmake +++ /dev/null @@ -1,28 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -set(ENV{CC} nvc) -set(ENV{CXX} nvc++) -set(ENV{FC} nvfortran) - -set(dashboard_cache " -ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=ON -ADIOS2_USE_CUDA:BOOL=OFF -ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=ON -ADIOS2_USE_MPI:BOOL=OFF -ADIOS2_USE_Python:BOOL=OFF -ADIOS2_USE_SZ:BOOL=ON -ADIOS2_USE_ZeroMQ:STRING=ON -ADIOS2_USE_ZFP:BOOL=ON - -#CMAKE_C_FLAGS:STRING=-Werror -CMAKE_CXX_FLAGS:STRING=--brief_diagnostics -#CMAKE_Fortran_FLAGS:STRING=-warn errors -") - -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-el8-oneapi-mpi.cmake b/scripts/ci/cmake-v2/ci-el8-oneapi-ompi.cmake similarity index 79% rename from scripts/ci/cmake-v2/ci-el8-oneapi-mpi.cmake rename to scripts/ci/cmake-v2/ci-el8-oneapi-ompi.cmake index 72ee3c7284..ee8163d468 100644 --- a/scripts/ci/cmake-v2/ci-el8-oneapi-mpi.cmake +++ b/scripts/ci/cmake-v2/ci-el8-oneapi-ompi.cmake @@ -1,5 +1,3 @@ -# Client maintainer: chuck.atkins@kitware.com - include(ProcessorCount) ProcessorCount(NCPUS) math(EXPR N2CPUS "${NCPUS}*2") @@ -10,9 +8,10 @@ set(ENV{FC} ifort) # oneapi fortran compiler currently has issues set(dashboard_cache " ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=ON +ADIOS2_USE_Blosc:BOOL=OFF ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON +ADIOS2_USE_DataSpaces:BOOL=OFF +ADIOS2_USE_Fortran:BOOL=OFF ADIOS2_USE_HDF5:BOOL=ON ADIOS2_USE_MPI:BOOL=ON ADIOS2_USE_Python:BOOL=ON @@ -21,14 +20,15 @@ ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON CMAKE_C_FLAGS:STRING=-Wall +CMAKE_C_FLAGS_DEBUG:STRING=-g -O0 CMAKE_CXX_FLAGS:STRING=-Wall -CMAKE_Fortran_FLAGS:STRING=-warn all +CMAKE_CXX_FLAGS_DEBUG:STRING=-g -O0 +CMAKE_Fortran_FLAGS:STRING=-W1 MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} ") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) set(CTEST_CMAKE_GENERATOR "Unix Makefiles") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-el8-oneapi-serial.cmake b/scripts/ci/cmake-v2/ci-el8-oneapi-serial.cmake index 17f5e90b18..0171b05df4 100644 --- a/scripts/ci/cmake-v2/ci-el8-oneapi-serial.cmake +++ b/scripts/ci/cmake-v2/ci-el8-oneapi-serial.cmake @@ -1,14 +1,13 @@ -# Client maintainer: chuck.atkins@kitware.com - set(ENV{CC} icx) set(ENV{CXX} icpx) set(ENV{FC} ifort) # oneapi fortran compiler currently has issues set(dashboard_cache " ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=ON +ADIOS2_USE_Blosc:BOOL=OFF ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON +ADIOS2_USE_DataSpaces:BOOL=OFF +ADIOS2_USE_Fortran:BOOL=OFF ADIOS2_USE_HDF5:BOOL=ON ADIOS2_USE_MPI:BOOL=OFF ADIOS2_USE_Python:BOOL=ON @@ -17,11 +16,12 @@ ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON CMAKE_C_FLAGS:STRING=-Wall +CMAKE_C_FLAGS_DEBUG:STRING=-g -O0 CMAKE_CXX_FLAGS:STRING=-Wall -CMAKE_Fortran_FLAGS:STRING=-warn all +CMAKE_CXX_FLAGS_DEBUG:STRING=-g -O0 +CMAKE_Fortran_FLAGS:STRING=-W1 ") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) set(CTEST_CMAKE_GENERATOR "Unix Makefiles") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-clang10-ompi.cmake b/scripts/ci/cmake-v2/ci-ubuntu20.04-clang10-ompi.cmake new file mode 100644 index 0000000000..7ebb831301 --- /dev/null +++ b/scripts/ci/cmake-v2/ci-ubuntu20.04-clang10-ompi.cmake @@ -0,0 +1,40 @@ +include(ProcessorCount) +ProcessorCount(NCPUS) +math(EXPR N2CPUS "${NCPUS}*2") + +set(ENV{CC} clang-10) +set(ENV{CXX} clang++-10) +set(ENV{FC} gfortran-11) + +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + +set(dashboard_cache " +ADIOS2_USE_BZip2:BOOL=ON +ADIOS2_USE_Blosc:BOOL=ON +ADIOS2_USE_DataMan:BOOL=ON +ADIOS2_USE_Fortran:BOOL=ON +ADIOS2_USE_HDF5:BOOL=ON +ADIOS2_USE_MPI:BOOL=ON +ADIOS2_USE_Python:BOOL=ON +ADIOS2_USE_SZ:BOOL=ON +ADIOS2_USE_ZeroMQ:STRING=ON +ADIOS2_USE_ZFP:BOOL=ON + +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + +CMAKE_C_FLAGS:STRING=-Wall +CMAKE_CXX_FLAGS:STRING=-Wall +CMAKE_Fortran_FLAGS:STRING=-Wall + +MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe +MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} +") + +set(CTEST_CMAKE_GENERATOR "Ninja") +list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-clang10-serial.cmake b/scripts/ci/cmake-v2/ci-ubuntu20.04-clang10-serial.cmake new file mode 100644 index 0000000000..96d0c1fe3e --- /dev/null +++ b/scripts/ci/cmake-v2/ci-ubuntu20.04-clang10-serial.cmake @@ -0,0 +1,33 @@ +set(ENV{CC} clang-10) +set(ENV{CXX} clang++-10) +set(ENV{FC} gfortran-11) + +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + +set(dashboard_cache " +ADIOS2_USE_BZip2:BOOL=ON +ADIOS2_USE_Blosc:BOOL=ON +ADIOS2_USE_DataMan:BOOL=ON +ADIOS2_USE_Fortran:BOOL=ON +ADIOS2_USE_HDF5:BOOL=ON +ADIOS2_USE_MPI:BOOL=OFF +ADIOS2_USE_Python:BOOL=ON +ADIOS2_USE_SZ:BOOL=ON +ADIOS2_USE_ZeroMQ:STRING=ON +ADIOS2_USE_ZFP:BOOL=ON + +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + +CMAKE_C_FLAGS:STRING=-Wall +CMAKE_CXX_FLAGS:STRING=-Wall +CMAKE_Fortran_FLAGS:STRING=-Wall +") + +set(CTEST_CMAKE_GENERATOR "Ninja") +list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-clang6-ompi.cmake b/scripts/ci/cmake-v2/ci-ubuntu20.04-clang6-ompi.cmake new file mode 100644 index 0000000000..00c3577544 --- /dev/null +++ b/scripts/ci/cmake-v2/ci-ubuntu20.04-clang6-ompi.cmake @@ -0,0 +1,40 @@ +include(ProcessorCount) +ProcessorCount(NCPUS) +math(EXPR N2CPUS "${NCPUS}*2") + +set(ENV{CC} clang-6.0) +set(ENV{CXX} clang++-6.0) +set(ENV{FC} gfortran-11) + +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + +set(dashboard_cache " +ADIOS2_USE_BZip2:BOOL=ON +ADIOS2_USE_Blosc:BOOL=ON +ADIOS2_USE_DataMan:BOOL=ON +ADIOS2_USE_Fortran:BOOL=ON +ADIOS2_USE_HDF5:BOOL=ON +ADIOS2_USE_MPI:BOOL=ON +ADIOS2_USE_Python:BOOL=ON +ADIOS2_USE_SZ:BOOL=ON +ADIOS2_USE_ZeroMQ:STRING=ON +ADIOS2_USE_ZFP:BOOL=ON + +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + +CMAKE_C_FLAGS:STRING=-Wall +CMAKE_CXX_FLAGS:STRING=-Wall +CMAKE_Fortran_FLAGS:STRING=-Wall + +MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe +MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} +") + +set(CTEST_CMAKE_GENERATOR "Ninja") +list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-clang6-serial.cmake b/scripts/ci/cmake-v2/ci-ubuntu20.04-clang6-serial.cmake new file mode 100644 index 0000000000..0357b98fc5 --- /dev/null +++ b/scripts/ci/cmake-v2/ci-ubuntu20.04-clang6-serial.cmake @@ -0,0 +1,33 @@ +set(ENV{CC} clang-6.0) +set(ENV{CXX} clang++-6.0) +set(ENV{FC} gfortran-11) + +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + +set(dashboard_cache " +ADIOS2_USE_BZip2:BOOL=ON +ADIOS2_USE_Blosc:BOOL=ON +ADIOS2_USE_DataMan:BOOL=ON +ADIOS2_USE_Fortran:BOOL=ON +ADIOS2_USE_HDF5:BOOL=ON +ADIOS2_USE_MPI:BOOL=OFF +ADIOS2_USE_Python:BOOL=ON +ADIOS2_USE_SZ:BOOL=ON +ADIOS2_USE_ZeroMQ:STRING=ON +ADIOS2_USE_ZFP:BOOL=ON + +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + +CMAKE_C_FLAGS:STRING=-Wall +CMAKE_CXX_FLAGS:STRING=-Wall +CMAKE_Fortran_FLAGS:STRING=-Wall +") + +set(CTEST_CMAKE_GENERATOR "Ninja") +list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-el8-gcc10-mpich.cmake b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-mpich.cmake similarity index 75% rename from scripts/ci/cmake-v2/ci-el8-gcc10-mpich.cmake rename to scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-mpich.cmake index 5ce2313669..3e147d94ef 100644 --- a/scripts/ci/cmake-v2/ci-el8-gcc10-mpich.cmake +++ b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-mpich.cmake @@ -1,5 +1,3 @@ -# Client maintainer: chuck.atkins@kitware.com - include(ProcessorCount) ProcessorCount(NCPUS) math(EXPR N2CPUS "${NCPUS}*2") @@ -8,6 +6,11 @@ set(ENV{CC} gcc) set(ENV{CXX} g++) set(ENV{FC} gfortran) +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + set(dashboard_cache " ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_Blosc:BOOL=ON @@ -20,6 +23,10 @@ ADIOS2_USE_SZ:BOOL=ON ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake-v2/ci-el8-gcc11-mpi.cmake b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-ompi.cmake similarity index 77% rename from scripts/ci/cmake-v2/ci-el8-gcc11-mpi.cmake rename to scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-ompi.cmake index 37965ff7c3..8bc947c2d8 100644 --- a/scripts/ci/cmake-v2/ci-el8-gcc11-mpi.cmake +++ b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-ompi.cmake @@ -1,5 +1,3 @@ -# Client maintainer: chuck.atkins@kitware.com - include(ProcessorCount) ProcessorCount(NCPUS) math(EXPR N2CPUS "${NCPUS}*2") @@ -8,6 +6,11 @@ set(ENV{CC} gcc) set(ENV{CXX} g++) set(ENV{FC} gfortran) +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + set(dashboard_cache " ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_Blosc:BOOL=ON @@ -20,6 +23,10 @@ ADIOS2_USE_SZ:BOOL=ON ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake-v2/ci-el8-gcc11-serial.cmake b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-serial.cmake similarity index 72% rename from scripts/ci/cmake-v2/ci-el8-gcc11-serial.cmake rename to scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-serial.cmake index b25289765d..4801f3f4d9 100644 --- a/scripts/ci/cmake-v2/ci-el8-gcc11-serial.cmake +++ b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-serial.cmake @@ -1,9 +1,12 @@ -# Client maintainer: chuck.atkins@kitware.com - set(ENV{CC} gcc) set(ENV{CXX} g++) set(ENV{FC} gfortran) +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + set(dashboard_cache " ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_Blosc:BOOL=ON @@ -16,6 +19,10 @@ ADIOS2_USE_SZ:BOOL=ON ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake-v2/ci-el8-gcc10-mpi.cmake b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc11-ompi.cmake similarity index 77% rename from scripts/ci/cmake-v2/ci-el8-gcc10-mpi.cmake rename to scripts/ci/cmake-v2/ci-ubuntu20.04-gcc11-ompi.cmake index 37965ff7c3..8bc947c2d8 100644 --- a/scripts/ci/cmake-v2/ci-el8-gcc10-mpi.cmake +++ b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc11-ompi.cmake @@ -1,5 +1,3 @@ -# Client maintainer: chuck.atkins@kitware.com - include(ProcessorCount) ProcessorCount(NCPUS) math(EXPR N2CPUS "${NCPUS}*2") @@ -8,6 +6,11 @@ set(ENV{CC} gcc) set(ENV{CXX} g++) set(ENV{FC} gfortran) +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + set(dashboard_cache " ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_Blosc:BOOL=ON @@ -20,6 +23,10 @@ ADIOS2_USE_SZ:BOOL=ON ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake-v2/ci-el8-gcc9-serial.cmake b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc11-serial.cmake similarity index 72% rename from scripts/ci/cmake-v2/ci-el8-gcc9-serial.cmake rename to scripts/ci/cmake-v2/ci-ubuntu20.04-gcc11-serial.cmake index b25289765d..4801f3f4d9 100644 --- a/scripts/ci/cmake-v2/ci-el8-gcc9-serial.cmake +++ b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc11-serial.cmake @@ -1,9 +1,12 @@ -# Client maintainer: chuck.atkins@kitware.com - set(ENV{CC} gcc) set(ENV{CXX} g++) set(ENV{FC} gfortran) +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + set(dashboard_cache " ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_Blosc:BOOL=ON @@ -16,6 +19,10 @@ ADIOS2_USE_SZ:BOOL=ON ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake-v2/ci-el8-gcc9-mpi.cmake b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc8-ompi.cmake similarity index 77% rename from scripts/ci/cmake-v2/ci-el8-gcc9-mpi.cmake rename to scripts/ci/cmake-v2/ci-ubuntu20.04-gcc8-ompi.cmake index 37965ff7c3..8bc947c2d8 100644 --- a/scripts/ci/cmake-v2/ci-el8-gcc9-mpi.cmake +++ b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc8-ompi.cmake @@ -1,5 +1,3 @@ -# Client maintainer: chuck.atkins@kitware.com - include(ProcessorCount) ProcessorCount(NCPUS) math(EXPR N2CPUS "${NCPUS}*2") @@ -8,6 +6,11 @@ set(ENV{CC} gcc) set(ENV{CXX} g++) set(ENV{FC} gfortran) +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + set(dashboard_cache " ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_Blosc:BOOL=ON @@ -20,6 +23,10 @@ ADIOS2_USE_SZ:BOOL=ON ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake-v2/ci-el8-gcc10-serial.cmake b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc8-serial.cmake similarity index 72% rename from scripts/ci/cmake-v2/ci-el8-gcc10-serial.cmake rename to scripts/ci/cmake-v2/ci-ubuntu20.04-gcc8-serial.cmake index b25289765d..4801f3f4d9 100644 --- a/scripts/ci/cmake-v2/ci-el8-gcc10-serial.cmake +++ b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc8-serial.cmake @@ -1,9 +1,12 @@ -# Client maintainer: chuck.atkins@kitware.com - set(ENV{CC} gcc) set(ENV{CXX} g++) set(ENV{FC} gfortran) +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + set(dashboard_cache " ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_Blosc:BOOL=ON @@ -16,6 +19,10 @@ ADIOS2_USE_SZ:BOOL=ON ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake-v2/ci-el8-gcc8-mpi.cmake b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc9-ompi.cmake similarity index 73% rename from scripts/ci/cmake-v2/ci-el8-gcc8-mpi.cmake rename to scripts/ci/cmake-v2/ci-ubuntu20.04-gcc9-ompi.cmake index 4bc8c1b644..8bc947c2d8 100644 --- a/scripts/ci/cmake-v2/ci-el8-gcc8-mpi.cmake +++ b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc9-ompi.cmake @@ -1,5 +1,3 @@ -# Client maintainer: chuck.atkins@kitware.com - include(ProcessorCount) ProcessorCount(NCPUS) math(EXPR N2CPUS "${NCPUS}*2") @@ -8,6 +6,11 @@ set(ENV{CC} gcc) set(ENV{CXX} g++) set(ENV{FC} gfortran) +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + set(dashboard_cache " ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_Blosc:BOOL=ON @@ -20,6 +23,10 @@ ADIOS2_USE_SZ:BOOL=ON ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall @@ -28,7 +35,6 @@ MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} ") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") +set(CTEST_CMAKE_GENERATOR "Ninja") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-el8-cuda-serial.cmake b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc9-serial.cmake similarity index 72% rename from scripts/ci/cmake-v2/ci-el8-cuda-serial.cmake rename to scripts/ci/cmake-v2/ci-ubuntu20.04-gcc9-serial.cmake index eca07809fe..4801f3f4d9 100644 --- a/scripts/ci/cmake-v2/ci-el8-cuda-serial.cmake +++ b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc9-serial.cmake @@ -1,21 +1,28 @@ -# Client maintainer: vicente.bolea@kitware.com - set(ENV{CC} gcc) set(ENV{CXX} g++) set(ENV{FC} gfortran) +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + set(dashboard_cache " ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_Blosc:BOOL=ON ADIOS2_USE_DataMan:BOOL=ON ADIOS2_USE_Fortran:BOOL=ON ADIOS2_USE_HDF5:BOOL=ON +ADIOS2_USE_MPI:BOOL=OFF ADIOS2_USE_Python:BOOL=ON ADIOS2_USE_SZ:BOOL=ON ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON -ADIOS2_USE_CUDA:BOOL=ON -ADIOS2_USE_MPI:BOOL=OFF + +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake-v2/ci-win2019-vs2019-mpi.cmake b/scripts/ci/cmake-v2/ci-win2019-vs2019-ompi.cmake similarity index 88% rename from scripts/ci/cmake-v2/ci-win2019-vs2019-mpi.cmake rename to scripts/ci/cmake-v2/ci-win2019-vs2019-ompi.cmake index 6f9eb05afc..42ee581bc7 100644 --- a/scripts/ci/cmake-v2/ci-win2019-vs2019-mpi.cmake +++ b/scripts/ci/cmake-v2/ci-win2019-vs2019-ompi.cmake @@ -1,5 +1,3 @@ -# Client maintainer: chuck.atkins@kitware.com - set(ENV{CC} cl) set(ENV{CXX} cl) set(ENV{CFLAGS} /WX) diff --git a/scripts/ci/cmake-v2/ci-win2019-vs2019-serial.cmake b/scripts/ci/cmake-v2/ci-win2019-vs2019-serial.cmake index 641bcc7f4d..71288aaec5 100644 --- a/scripts/ci/cmake-v2/ci-win2019-vs2019-serial.cmake +++ b/scripts/ci/cmake-v2/ci-win2019-vs2019-serial.cmake @@ -1,5 +1,3 @@ -# Client maintainer: chuck.atkins@kitware.com - set(ENV{CC} cl) set(ENV{CXX} cl) set(ENV{CFLAGS} /WX) diff --git a/scripts/ci/cmake-v2/ci-win2022-vs2022-mpi.cmake b/scripts/ci/cmake-v2/ci-win2022-vs2022-ompi.cmake similarity index 88% rename from scripts/ci/cmake-v2/ci-win2022-vs2022-mpi.cmake rename to scripts/ci/cmake-v2/ci-win2022-vs2022-ompi.cmake index 50b8b8d43b..74626dfecd 100644 --- a/scripts/ci/cmake-v2/ci-win2022-vs2022-mpi.cmake +++ b/scripts/ci/cmake-v2/ci-win2022-vs2022-ompi.cmake @@ -1,5 +1,3 @@ -# Client maintainer: chuck.atkins@kitware.com - set(ENV{CC} cl) set(ENV{CXX} cl) set(ENV{CFLAGS} /WX) diff --git a/scripts/ci/cmake-v2/ci-win2022-vs2022-serial.cmake b/scripts/ci/cmake-v2/ci-win2022-vs2022-serial.cmake index be9d99277b..291be6ec45 100644 --- a/scripts/ci/cmake-v2/ci-win2022-vs2022-serial.cmake +++ b/scripts/ci/cmake-v2/ci-win2022-vs2022-serial.cmake @@ -1,5 +1,3 @@ -# Client maintainer: chuck.atkins@kitware.com - set(ENV{CC} cl) set(ENV{CXX} cl) set(ENV{CFLAGS} /WX) diff --git a/scripts/ci/gh-actions/macos-setup.sh b/scripts/ci/gh-actions/macos-setup.sh index f0235ee191..7b2bf39543 100755 --- a/scripts/ci/gh-actions/macos-setup.sh +++ b/scripts/ci/gh-actions/macos-setup.sh @@ -44,7 +44,7 @@ brew install c-blosc echo "Installing python3" brew install python numpy -if [[ "$GH_YML_JOBNAME" =~ -mpi ]] +if [[ "$GH_YML_JOBNAME" =~ -ompi ]] then echo "Installing OpenMPI" brew install openmpi mpi4py diff --git a/scripts/ci/gh-actions/run.sh b/scripts/ci/gh-actions/run.sh index 512a62eda5..9847d5bfec 100755 --- a/scripts/ci/gh-actions/run.sh +++ b/scripts/ci/gh-actions/run.sh @@ -69,7 +69,7 @@ export TMPDIR="${RUNNER_TEMP}/tmp" mkdir -p "${TMPDIR}" # OpenMPI specific setup and workarounds -if [[ "${GH_YML_MATRIX_PARALLEL}" =~ mpi && "${GH_YML_BASE_OS}" != "Windows" ]] +if [[ "${GH_YML_MATRIX_PARALLEL}" =~ ompi && "${GH_YML_BASE_OS}" != "Windows" ]] then # Quiet some warnings from OpenMPI export OMPI_MCA_btl_base_warn_component_unused=0 diff --git a/scripts/ci/gh-actions/windows-setup.ps1 b/scripts/ci/gh-actions/windows-setup.ps1 index 18b9248e58..4334327a2b 100644 --- a/scripts/ci/gh-actions/windows-setup.ps1 +++ b/scripts/ci/gh-actions/windows-setup.ps1 @@ -8,7 +8,7 @@ Write-Host "::group::Installing NumPy" pip install "numpy>=1.19" Write-Host "::endgroup::" -if($Env:GH_YML_MATRIX_PARALLEL -eq "mpi") +if($Env:GH_YML_MATRIX_PARALLEL -eq "ompi") { # This is taken from the MSMPI VCPKG $baseurl = "https://download.microsoft.com/download/a/5/2/a5207ca5-1203-491a-8fb8-906fd68ae623" diff --git a/scripts/ci/images-v2/0001-spack-rhel-fix.patch b/scripts/ci/images-v2/0001-spack-rhel-fix.patch deleted file mode 100644 index 606583143b..0000000000 --- a/scripts/ci/images-v2/0001-spack-rhel-fix.patch +++ /dev/null @@ -1,11 +0,0 @@ ---- lib/spack/spack/solver/concretize.lp -+++ lib/spack/spack/solver/concretize.lp -@@ -718,6 +718,9 @@ - % catalina binaries can be used on bigsur. Direction is package -> dependency. - os_compatible("bigsur", "catalina"). - -+os_compatible("rocky8", "centos8"). -+os_compatible("centos8", "rocky8"). -+ - % If an OS is set explicitly respect the value - node_os(Package, OS) :- node_os_set(Package, OS), node(Package). diff --git a/scripts/ci/images-v2/0002-spack-libcatalyst-git.patch b/scripts/ci/images-v2/0002-spack-libcatalyst-git.patch deleted file mode 100644 index d3b5486a9d..0000000000 --- a/scripts/ci/images-v2/0002-spack-libcatalyst-git.patch +++ /dev/null @@ -1,33 +0,0 @@ -From 617c2907f9744bbb04e1eb1d750318a24e0cd2b2 Mon Sep 17 00:00:00 2001 -From: Vicente Adolfo Bolea Sanchez -Date: Tue, 13 Sep 2022 17:20:58 -0400 -Subject: [PATCH] libcatalyst: use git instead of fixed urls - ---- - var/spack/repos/builtin/packages/libcatalyst/package.py | 6 +----- - 1 file changed, 1 insertion(+), 5 deletions(-) - -diff --git a/var/spack/repos/builtin/packages/libcatalyst/package.py b/var/spack/repos/builtin/packages/libcatalyst/package.py -index 808d3541f96b..4abf82d3ea44 100644 ---- a/var/spack/repos/builtin/packages/libcatalyst/package.py -+++ b/var/spack/repos/builtin/packages/libcatalyst/package.py -@@ -11,7 +11,7 @@ class Libcatalyst(CMakePackage): - scientific data producers) to analyze and visualize data in situ.""" - - homepage = 'https://gitlab.kitware.com/paraview/catalyst' -- url = "https://gitlab.kitware.com/paraview/catalyst/-/archive/{0}/catalyst-{0}.tar.bz2" -+ git = "https://gitlab.kitware.com/paraview/catalyst.git" - - maintainers = ['mathstuf'] - -@@ -26,10 +26,6 @@ class Libcatalyst(CMakePackage): - # TODO: catalyst doesn't support an external conduit - # depends_on('conduit') - -- def url_for_version(self, version): -- _urlfmt = self.url -- return _urlfmt.format(version) -- - def cmake_args(self): - """Populate cmake arguments for libcatalyst.""" - args = [ diff --git a/scripts/ci/images-v2/Dockerfile.ci-el8-intel b/scripts/ci/images-v2/Dockerfile.ci-el8-intel new file mode 100644 index 0000000000..82eacf7b4a --- /dev/null +++ b/scripts/ci/images-v2/Dockerfile.ci-el8-intel @@ -0,0 +1,80 @@ +FROM almalinux:8 + +RUN dnf upgrade -y && \ + dnf install -y glibc-langpack-en + +RUN dnf install -y dnf-plugins-core && \ + dnf config-manager --set-enabled powertools && \ + dnf install -y epel-release + +RUN dnf install -y \ + bzip2-devel \ + curl \ + diffutils \ + file \ + findutils \ + git \ + gcc-c++ \ + gcc \ + gnupg2 \ + gzip \ + hdf5-devel \ + libpng-devel \ + Lmod \ + make \ + openmpi-devel \ + patch \ + patchelf \ + python3-devel \ + python3-mpi4py-openmpi \ + python3-pip \ + tar \ + tcl \ + unzip \ + which \ + xz \ + zeromq-devel \ + zfp-devel \ + zlib-devel + +# Install the compilers from an external repo +COPY oneAPI.repo /etc/yum.repos.d/ +RUN pip3 install numpy && \ + dnf install -y \ + intel-oneapi-compiler-dpcpp-cpp \ + intel-oneapi-compiler-fortran \ + intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic +RUN dnf clean all + +# Setup module files for the compilers +RUN /opt/intel/oneapi/modulefiles-setup.sh \ + --force \ + --output-dir=/usr/share/modulefiles + +# Install the latest CMake release binary +WORKDIR /opt/cmake +RUN curl -L https://cmake.org/files/LatestRelease/$(curl https://cmake.org/files/LatestRelease/ | sed -n '/linux-x86_64.tar.gz/s/.*>\(cmake[^<]*\)<.*/\1/p' | sort | tail -1) | tar --strip-components=1 -xzv + +# Install SZ +WORKDIR /opt/sz +RUN curl -L https://github.com/szcompressor/SZ/releases/download/v2.1.12.5/SZ-2.1.12.5.tar.gz | tar -xvz && \ + mkdir build && \ + cd build && \ + /opt/cmake/bin/cmake -DBUILD_SHARED_LIBS=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/sz/2.1.12.5 ../SZ-2.1.12.5 && \ + make -j$(grep -c '^processor' /proc/cpuinfo) install && \ + cd .. && \ + rm -rf SZ-2.1.12.5 build + +ENV PATH /opt/cmake/bin:/opt/sz/2.1.12.5/bin:/usr/lib64/openmpi/bin:${PATH} +ENV LD_LIBRARY_PATH /opt/sz/2.1.12.5/lib64:${LD_LIBRARY_PATH} +ENV CMAKE_PREFIX_PATH /opt/sz/2.1.12.5:${CMAKE_PREFIX_PATH} + +# Install mpi4py +RUN mkdir /opt/mpi4py && pushd /opt/mpi4py && \ + curl -L https://github.com/mpi4py/mpi4py/releases/download/3.1.4/mpi4py-3.1.4.tar.gz | tar -xzv && \ + cd mpi4py-3.1.4/ && \ + python3 setup.py build && \ + python3 setup.py install && \ + popd && rm -rf /opt/mpi4py + +WORKDIR / diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-base b/scripts/ci/images-v2/Dockerfile.ci-spack-el8-base deleted file mode 100644 index f5f4edeafb..0000000000 --- a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-base +++ /dev/null @@ -1,31 +0,0 @@ -ARG BASE_IMAGE=almalinux:8 -FROM $BASE_IMAGE - -RUN dnf upgrade -y && \ - dnf install -y glibc-langpack-en -RUN dnf install -y dnf-plugins-core && \ - dnf config-manager --set-enabled powertools && \ - dnf install -y epel-release -RUN dnf install -y \ - bzip2 curl file gcc-c++ gcc git gnupg2 gzip \ - make patch tcl unzip which xz patchelf diffutils findutils tar Lmod \ - python3 python3-pip -RUN dnf clean all - -RUN git clone -b v0.18.1 https://github.com/spack/spack.git /opt/spack -COPY modules.yaml /etc/spack/modules.yaml -COPY 0001-spack-rhel-fix.patch /root/0001-spack-rhel-fix.patch -COPY 0002-spack-libcatalyst-git.patch /root/0002-spack-catalyst-git.patch - -RUN cd /opt/spack && \ - patch -p0 < /root/0001-spack-rhel-fix.patch && \ - git apply /root/0002-spack-catalyst-git.patch - -RUN . /opt/spack/share/spack/setup-env.sh && \ - spack config --scope system add concretizer:targets:granularity:generic && \ - spack config update modules -y && \ - spack compiler find --scope system && \ - spack clean -a && \ - spack mirror add E4S https://cache.e4s.io && \ - spack buildcache keys --install --trust && \ - spack spec zlib diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-clang13-base b/scripts/ci/images-v2/Dockerfile.ci-spack-el8-clang13-base deleted file mode 100644 index efeb3a087a..0000000000 --- a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-clang13-base +++ /dev/null @@ -1,45 +0,0 @@ -FROM ornladios/adios2:ci-spack-el8-base - -# Install build dependencies (Clang requires a newer GCC to build) -RUN dnf install -y elfutils-devel && \ - dnf install -y cmake ninja-build gcc-toolset-11 - -# Install the clang compilers from source -RUN cd /opt && \ - mkdir clang && \ - cd clang && \ - curl -L -O https://github.com/llvm/llvm-project/releases/download/llvmorg-13.0.1/llvm-project-13.0.1.src.tar.xz && \ - tar -xvf llvm-project-13.0.1.src.tar.xz && \ - mkdir build && \ - cd build && \ - . /opt/rh/gcc-toolset-11/enable && \ - cmake \ - -G Ninja \ - -DCMAKE_BUILD_TYPE=Release \ - -DCMAKE_INSTALL_PREFIX=/opt/clang/13.0.1 \ - -DLLVM_REQUIRES_RTTI=TRUE \ - -DLLVM_ENABLE_RTTI=TRUE \ - -DLLVM_ENABLE_EH=TRUE \ - -DLLVM_BUILD_LLVM_DYLIB=ON \ - -DLIBCXX_ENABLE_STATIC_ABI_LIBRARY=ON \ - -DLLVM_TARGETS_TO_BUILD=X86 \ - -DLLVM_ENABLE_PROJECTS="clang;flang;lld;openmp;clang-tools-extra;libcxx;libcxxabi;compiler-rt;pstl;mlir" \ - ../llvm-project-13.0.1.src/llvm && \ - ninja install - -# Remove build-time dependencies (leave elf-utils for OpenMP to work) -RUN rm -rf /opt/clang/llvm* /opt/clang/build && \ - dnf autoremove -y cmake ninja-build gcc-toolset-11 && \ - dnf install -y gcc-gfortran && \ - dnf clean all - -# Add compilers to spack -RUN . /opt/spack/share/spack/setup-env.sh && \ - spack compiler add --scope system \ - /opt/clang/13.0.1 && \ - spack config --scope=system add 'packages:all:compiler: [clang, gcc]' && \ - sed \ - -e '15,100 s|f77: null|f77: /opt/clang/13.0.1/bin/flang|' \ - -e '15,100 s|fc: null|fc: /opt/clang/13.0.1/bin/flang|' \ - -i /etc/spack/compilers.yaml && \ - spack clean -a diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-cuda-base b/scripts/ci/images-v2/Dockerfile.ci-spack-el8-cuda-base deleted file mode 100644 index 6f271fc024..0000000000 --- a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-cuda-base +++ /dev/null @@ -1,14 +0,0 @@ -ARG BASE_IMAGE=ornladios/adios2:ci-spack-el8-base -FROM $BASE_IMAGE - -RUN yum config-manager --add-repo http://developer.download.nvidia.com/compute/cuda/repos/rhel8/x86_64/cuda-rhel8.repo - -# Install the gcc fortran compiler missing from the base image -RUN dnf install -y gcc-gfortran cuda && \ - dnf clean all - -# Add the compilers to spack -RUN . /opt/spack/share/spack/setup-env.sh && \ - spack compiler rm --scope system gcc && \ - spack compiler add --scope system && \ - spack config --scope system add "packages:all:compiler:[gcc]" diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc10-base b/scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc10-base deleted file mode 100644 index 0008b1b548..0000000000 --- a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc10-base +++ /dev/null @@ -1,17 +0,0 @@ -FROM ornladios/adios2:ci-spack-el8-base - -# Install gcc from the dev-toolset packages -RUN dnf install -y gcc-toolset-10 && \ - dnf clean all - -# Add the compilers to spack -COPY gcc-toolset-module.tcl /tmp/ -RUN . /opt/spack/share/spack/setup-env.sh && \ - sed 's|TOOLSET|10|' /tmp/gcc-toolset-module.tcl > /usr/share/Modules/modulefiles/gcc-10 && \ - rm -f /tmp/gcc-toolset-module.tcl && \ - . /etc/profile.d/modules.sh && \ - module load gcc-10 && \ - spack compiler add --scope=system && \ - MODLINE=$(grep -n modules /etc/spack/compilers.yaml | cut -d : -f 1 | tail -1) && \ - sed "${MODLINE} s|modules:.*|modules: [gcc-10]|" -i \ - /etc/spack/compilers.yaml diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc11-base b/scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc11-base deleted file mode 100644 index 3a5d7ee14e..0000000000 --- a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc11-base +++ /dev/null @@ -1,17 +0,0 @@ -FROM ornladios/adios2:ci-spack-el8-base - -# Install gcc from the dev-toolset packages -RUN dnf install -y gcc-toolset-11 && \ - dnf clean all - -# Add the compilers to spack -COPY gcc-toolset-module.tcl /tmp/ -RUN . /opt/spack/share/spack/setup-env.sh && \ - sed 's|TOOLSET|11|' /tmp/gcc-toolset-module.tcl > /usr/share/Modules/modulefiles/gcc-11 && \ - rm -f /tmp/gcc-toolset-module.tcl && \ - . /etc/profile.d/modules.sh && \ - module load gcc-11 && \ - spack compiler add --scope=system && \ - MODLINE=$(grep -n modules /etc/spack/compilers.yaml | cut -d : -f 1 | tail -1) && \ - sed "${MODLINE} s|modules:.*|modules: [gcc-11]|" -i \ - /etc/spack/compilers.yaml diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc8-base b/scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc8-base deleted file mode 100644 index 9607e82a63..0000000000 --- a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc8-base +++ /dev/null @@ -1,12 +0,0 @@ -ARG BASE_IMAGE=ornladios/adios2:ci-spack-el8-base -FROM $BASE_IMAGE - -# Install the gcc fortran compiler missing from the base image -RUN dnf install -y gcc-gfortran && \ - dnf clean all - -# Add the compilers to spack -RUN . /opt/spack/share/spack/setup-env.sh && \ - spack compiler rm --scope system gcc && \ - spack compiler add --scope system && \ - spack config --scope system add "packages:all:compiler:[gcc]" diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc9-base b/scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc9-base deleted file mode 100644 index 2655bd362e..0000000000 --- a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-gcc9-base +++ /dev/null @@ -1,17 +0,0 @@ -FROM ornladios/adios2:ci-spack-el8-base - -# Install gcc from the dev-toolset packages -RUN dnf install -y gcc-toolset-9 && \ - dnf clean all - -# Add the compilers to spack -COPY gcc-toolset-module.tcl /tmp/ -RUN . /opt/spack/share/spack/setup-env.sh && \ - sed 's|TOOLSET|9|' /tmp/gcc-toolset-module.tcl > /usr/share/Modules/modulefiles/gcc-9 && \ - rm -f /tmp/gcc-toolset-module.tcl && \ - . /etc/profile.d/modules.sh && \ - module load gcc-9 && \ - spack compiler add --scope=system && \ - MODLINE=$(grep -n modules /etc/spack/compilers.yaml | cut -d : -f 1 | tail -1) && \ - sed "${MODLINE} s|modules:.*|modules: [gcc-9]|" -i \ - /etc/spack/compilers.yaml diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-icc-base b/scripts/ci/images-v2/Dockerfile.ci-spack-el8-icc-base deleted file mode 100644 index 964e767aba..0000000000 --- a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-icc-base +++ /dev/null @@ -1,14 +0,0 @@ -FROM ornladios/adios2:ci-spack-el8-intel-base - -# Install the compilers from an external repo -RUN dnf install -y \ - intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic && \ - dnf clean all - -# Enable the classic intel compiler -RUN . /opt/spack/share/spack/setup-env.sh && \ - spack compiler add --scope system \ - /opt/intel/oneapi/compiler/latest/linux/bin/intel64 && \ - sed '15,100 s|modules: \[\]|modules: \[icc\]|' \ - -i /etc/spack/compilers.yaml && \ - spack config --scope=system add 'packages:all:compiler: [intel, gcc]' diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-intel-base b/scripts/ci/images-v2/Dockerfile.ci-spack-el8-intel-base deleted file mode 100644 index 08a4992d06..0000000000 --- a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-intel-base +++ /dev/null @@ -1,13 +0,0 @@ -FROM ornladios/adios2:ci-spack-el8-base - -# Install the compilers from an external repo -COPY oneAPI.repo /etc/yum.repos.d/ -RUN dnf install -y \ - intel-oneapi-compiler-dpcpp-cpp \ - intel-oneapi-compiler-fortran && \ - dnf clean all - -# Setup module files for the compilers -RUN /opt/intel/oneapi/modulefiles-setup.sh \ - --force \ - --output-dir=/usr/share/modulefiles diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-leaf b/scripts/ci/images-v2/Dockerfile.ci-spack-el8-leaf deleted file mode 100644 index a0e8dd0f62..0000000000 --- a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-leaf +++ /dev/null @@ -1,62 +0,0 @@ -# vim: ft=dockerfile -ARG COMPILER_IMG_BASE - -FROM almalinux:8 AS builder -ARG COMPILER_IMG_BASE - -WORKDIR /root - -RUN dnf update -y && \ - dnf install -y python3-pip && \ - pip3 install pyexpander - -COPY packages.yaml.in packages.yaml.in -COPY specs.yaml.in specs.yaml.in - -ARG DEVICE=cpu -ARG MPI_VARIANT=~mpi -ARG MPI_PROVIDER=openmpi -ARG COMPILER_SPACK_ID - -RUN expander.py --eval \ - "COMPILER=\"${COMPILER_SPACK_ID}\";COMPILER_IMG_BASE=\"${COMPILER_IMG_BASE}\";DEVICE=\"${DEVICE}\";MPI_VARIANT=\"${MPI_VARIANT}\"" \ - specs.yaml.in > specs.yaml && \ - expander.py --eval \ - "DEVICE=\"${DEVICE}\";MPI_VARIANT=\"${MPI_VARIANT}\";MPI_PROVIDER=\"${MPI_PROVIDER}\"" \ - packages.yaml.in > packages.yaml - -FROM ornladios/adios2:ci-spack-el8-${COMPILER_IMG_BASE}-base - -COPY --from=builder /root/packages.yaml /etc/spack/packages.yaml - -# Build dependencies -ARG COMPILER_SPACK_ID -RUN . /etc/profile.d/modules.sh && \ - . /opt/spack/share/spack/setup-env.sh && \ - spack spec --reuse adios2%${COMPILER_SPACK_ID} ^rhash%gcc && \ - spack install \ - --no-checksum \ - --fail-fast \ - -v \ - -j$((2 * $(grep -c '^processor' /proc/cpuinfo))) \ - --only dependencies \ - adios2%${COMPILER_SPACK_ID} ^rhash%gcc && \ - spack clean -a - -COPY --from=builder /root/specs.yaml /tmp/specs.yaml - -# Setup modules -RUN . /opt/spack/share/spack/setup-env.sh && \ - spack env create adios2-ci /tmp/specs.yaml && \ - spack -e adios2-ci add $(spack find --implicit --format "/{hash}") && \ - spack -e adios2-ci concretize --force --fresh && \ - spack -e adios2-ci install \ - --no-checksum \ - --fail-fast \ - -v \ - -j$((2 * $(grep -c '^processor' /proc/cpuinfo))) - -# Setup default login environment -RUN . /etc/profile.d/modules.sh && \ - echo "source /opt/spack/share/spack/setup-env.sh" >> /etc/profile.d/zz-adios2-ci-env.sh && \ - echo "spack env activate adios2-ci" >> /etc/profile.d/zz-adios2-ci-env.sh diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-nvhpc222-leaf b/scripts/ci/images-v2/Dockerfile.ci-spack-el8-nvhpc222-leaf deleted file mode 100644 index f5cc2e74b7..0000000000 --- a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-nvhpc222-leaf +++ /dev/null @@ -1,38 +0,0 @@ -ARG PARALLEL -FROM ornladios/adios2:ci-spack-el8-gcc8-${PARALLEL} - -# Install NVHPC SDK -RUN cd /tmp && \ - curl -L -O https://developer.download.nvidia.com/hpc-sdk/22.2/nvhpc_2022_222_Linux_x86_64_cuda_11.6.tar.gz && \ - tar -xf nvhpc_2022_222_Linux_x86_64_cuda_11.6.tar.gz && \ - cd nvhpc_2022_222_Linux_x86_64_cuda_11.6 && \ - export \ - NVHPC_SILENT=true \ - NVHPC_INSTALL_DIR=/opt/nvidia/hpc_sdk \ - NVHPC_INSTALL_TYPE=single && \ - ./install && \ - echo 'export MODULEPATH=/opt/nvidia/hpc_sdk/modulefiles:${MODULEPATH}' > /etc/profile.d/nvhpc-modules.sh && \ - echo 'setenv MODULEPATH /opt/nvidia/hpc_sdk/modulefiles:${MODULEPATH}' > /etc/profile.d/nvhpc-modules.csh - -# Purge the unneded parts of the install to reclaim some space -ARG PARALLEL -RUN rm -rf \ - /tmp/nvhpc* \ - /opt/nvidia/hpc_sdk/Linux_x86_64/2022 \ - /opt/nvidia/hpc_sdk/Linux_x86_64/22.2/math_libs \ - /opt/nvidia/hpc_sdk/Linux_x86_64/22.2/profilers \ - /opt/nvidia/hpc_sdk/Linux_x86_64/22.2/examples \ - /opt/nvidia/hpc_sdk/modulefiles/nvhpc-byo-compiler \ - /opt/nvidia/hpc_sdk/modulefiles/nvhpc-nompi && \ - sed -e '/nvmathdir/ d' -i /opt/nvidia/hpc_sdk/modulefiles/nvhpc/* && \ - dnf config-manager --add-repo \ - https://developer.download.nvidia.com/compute/cuda/repos/rhel8/x86_64/cuda-rhel8.repo && \ - dnf install -y nvidia-driver-cuda-libs && \ - if [ "${PARALLEL}" = "serial" ] ; \ - then \ - rm -rf /opt/nvidia/hpc_sdk/Linux_x86_64/22.2/comm_libs ; \ - sed -e '/nvcommdir/ d' -i /opt/nvidia/hpc_sdk/modulefiles/nvhpc/* ; \ - else \ - dnf install -y libatomic ; \ - fi && \ - dnf clean all diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-oneapi-base b/scripts/ci/images-v2/Dockerfile.ci-spack-el8-oneapi-base deleted file mode 100644 index d2e71c99fe..0000000000 --- a/scripts/ci/images-v2/Dockerfile.ci-spack-el8-oneapi-base +++ /dev/null @@ -1,9 +0,0 @@ -FROM ornladios/adios2:ci-spack-el8-intel-base - -# Enable the classic intel compiler -RUN . /opt/spack/share/spack/setup-env.sh && \ - spack compiler add --scope system \ - /opt/intel/oneapi/compiler/latest/linux/bin && \ - sed '15,100 s|modules: \[\]|modules: \[compiler\]|' \ - -i /etc/spack/compilers.yaml && \ - spack config --scope=system add 'packages:all:compiler: [oneapi, gcc]' diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-base b/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-base new file mode 100644 index 0000000000..eea7b9cc30 --- /dev/null +++ b/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-base @@ -0,0 +1,52 @@ +# vim: ft=dockerfile +FROM ecpe4s/ubuntu20.04:23.02 + +COPY packages.yaml /etc/spack/packages.yaml +COPY specs.yaml /tmp/specs.yaml + +RUN . /spack/share/spack/setup-env.sh && \ + export ADIOS_SPEC_NO_MPI="adios2~mpi" && \ + export ADIOS_SPEC_OPENMPI="adios2+mpi^openmpi@4.1.4" && \ + export ADIOS_SPEC_MPICH="adios2+mpi^mpich device=ch3 netmod=tcp" && \ + spack env create adios2-ci-serial /tmp/specs.yaml && \ + spack -e adios2-ci-serial add ${ADIOS_SPEC_NO_MPI} && \ + spack -e adios2-ci-serial concretize && \ + spack -e adios2-ci-serial install \ + --include-build-deps \ + --no-check-signature \ + --fail-fast \ + --only dependencies \ + -j$(grep -c '^processor' /proc/cpuinfo) && \ + spack env create adios2-ci-ompi /tmp/specs.yaml && \ + spack -e adios2-ci-ompi add ${ADIOS_SPEC_OPENMPI} && \ + spack -e adios2-ci-ompi concretize && \ + spack -e adios2-ci-ompi install \ + --include-build-deps \ + --no-check-signature \ + --fail-fast \ + --only dependencies \ + -j$(grep -c '^processor' /proc/cpuinfo) && \ + spack env create adios2-ci-mpich /tmp/specs.yaml && \ + spack -e adios2-ci-mpich add ${ADIOS_SPEC_MPICH} && \ + spack -e adios2-ci-mpich concretize && \ + spack -e adios2-ci-mpich install \ + --include-build-deps \ + --no-check-signature \ + --fail-fast \ + --only dependencies \ + -j$(grep -c '^processor' /proc/cpuinfo) && \ + spack clean -a && \ + echo "source /spack/share/spack/setup-env.sh" >> /etc/profile.d/zz-spack.sh + +### Other missing packages (compared to el8 base): +RUN apt-get remove -y \ + gcc-9 \ + g++-9 \ + gfortran-9 && \ + apt-get autoremove --purge -y && \ + apt-get clean && \ + update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-11 100 && \ + update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-11 100 && \ + update-alternatives --install /usr/bin/gfortran gfortran /usr/bin/gfortran-11 100 + +ENTRYPOINT ["/bin/bash", "--login"] diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-clang b/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-clang new file mode 100644 index 0000000000..ff9e0f0dfa --- /dev/null +++ b/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-clang @@ -0,0 +1,6 @@ +FROM adios2:ci-spack-ubuntu20.04-base +ARG CLANG_VERSION=10 + +RUN apt-get update && apt-get install -y \ + clang-${CLANG_VERSION} && \ + rm -rf /var/lib/apt/lists/* diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-gcc b/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-gcc new file mode 100644 index 0000000000..cfd679d5ca --- /dev/null +++ b/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-gcc @@ -0,0 +1,11 @@ +FROM adios2:ci-spack-ubuntu20.04-base +ARG GCC_VERSION=8 + +RUN apt-get update && apt-get install -y \ + gcc-${GCC_VERSION} \ + g++-${GCC_VERSION} \ + gfortran-${GCC_VERSION} && \ + rm -rf /var/lib/apt/lists/* && \ + update-alternatives --install /usr/bin/gcc gcc /usr/bin/gcc-${GCC_VERSION} ${GCC_VERSION} && \ + update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-${GCC_VERSION} ${GCC_VERSION} && \ + update-alternatives --install /usr/bin/gfortran gfortran /usr/bin/gfortran-${GCC_VERSION} ${GCC_VERSION} diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-intel b/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-intel new file mode 100644 index 0000000000..c66b0a93a9 --- /dev/null +++ b/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-intel @@ -0,0 +1,13 @@ +FROM adios2:ci-spack-ubuntu20.04-base + +RUN wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | tee /usr/share/keyrings/oneapi-archive-keyring.gpg && \ + echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | tee /etc/apt/sources.list.d/oneAPI.list && \ + apt-get update && apt-get install -y \ + intel-oneapi-compiler-dpcpp-cpp \ + intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic \ + intel-oneapi-compiler-fortran && \ + . /spack/share/spack/setup-env.sh && \ + /opt/intel/oneapi/modulefiles-setup.sh --force --output-dir=/modules && \ + apt-get autoremove --purge && \ + apt-get clean && \ + rm -rf /var/lib/apt/lists/* diff --git a/scripts/ci/images-v2/build-base.sh b/scripts/ci/images-v2/build-base.sh deleted file mode 100755 index 74c0e017d5..0000000000 --- a/scripts/ci/images-v2/build-base.sh +++ /dev/null @@ -1,14 +0,0 @@ -#!/bin/bash - -BASE_DIR=$(dirname $(readlink -f ${BASH_SOURCE})) -source "${BASE_DIR}/build-functions.sh" - -message1 "Building ci-spack-el8 base image" -if ! build_squash \ - almalinux:8 \ - ornladios/adios2:ci-spack-el8-base \ - Dockerfile.ci-spack-el8-base -then - echo "Error: Failed to build ci-spack-el8 base image" - exit 3 -fi diff --git a/scripts/ci/images-v2/build-clang-base.sh b/scripts/ci/images-v2/build-clang-base.sh deleted file mode 100755 index 36ef314aaf..0000000000 --- a/scripts/ci/images-v2/build-clang-base.sh +++ /dev/null @@ -1,15 +0,0 @@ -#!/bin/bash -set +e - -BASE_DIR=$(dirname $(readlink -f ${BASH_SOURCE})) -source "${BASE_DIR}/build-functions.sh" - -message1 "Building clang13 base image" -if ! build_squash \ - ornladios/adios2:ci-spack-el8-base \ - ornladios/adios2:ci-spack-el8-clang13-base \ - Dockerfile.ci-spack-el8-clang13-base -then - echo "Error: Failed to build clang13 base image" - exit 3 -fi diff --git a/scripts/ci/images-v2/build-clang.sh b/scripts/ci/images-v2/build-clang.sh deleted file mode 100755 index 881dfc7ef7..0000000000 --- a/scripts/ci/images-v2/build-clang.sh +++ /dev/null @@ -1,8 +0,0 @@ -#!/bin/bash -BASE_DIR=$(dirname $(readlink -f ${BASH_SOURCE})) -source "${BASE_DIR}/build-functions.sh" - -if ! build_leafs clang13 clang -then - exit 1 -fi diff --git a/scripts/ci/images-v2/build-cuda.sh b/scripts/ci/images-v2/build-cuda.sh deleted file mode 100755 index 4fd5125b3f..0000000000 --- a/scripts/ci/images-v2/build-cuda.sh +++ /dev/null @@ -1,30 +0,0 @@ -#!/bin/bash -set -ex - -BASE_DIR=$(dirname $(readlink -f ${BASH_SOURCE})) -source "${BASE_DIR}/build-functions.sh" - -message1 "Building cuda base image" -if ! build_squash \ - ornladios/adios2:ci-spack-el8-base \ - ornladios/adios2:ci-spack-el8-cuda-base \ - Dockerfile.ci-spack-el8-cuda-base -then - echo "Error: Failed to build cuda base image" - exit 3 -fi - -message1 "Building ci-spack-el8 leaf image" -build_conf=cuda -if ! build_squash \ - ornladios/adios2:ci-spack-el8-cuda-base \ - ornladios/adios2:ci-spack-el8-cuda-serial \ - Dockerfile.ci-spack-el8-leaf \ - "--build-arg=COMPILER_IMG_BASE=${build_conf} - --build-arg=COMPILER_SPACK_ID=gcc - --build-arg=DEVICE=CUDA - --build-arg=MPI_VARIANT=~mpi" -then - echo "Error: Failed to build ci-spack-el8 leaf image" - exit 3 -fi diff --git a/scripts/ci/images-v2/build-el8.sh b/scripts/ci/images-v2/build-el8.sh new file mode 100755 index 0000000000..e60274cf60 --- /dev/null +++ b/scripts/ci/images-v2/build-el8.sh @@ -0,0 +1,15 @@ + +#~/bin/bash + +set -ex + +# Built the single el8 image +docker build --rm -f Dockerfile.ci-el8-intel -t adios2:ci-el8-intel . + +# Tag images +docker tag adios2:ci-el8-intel ghcr.io/ornladios/adios2:ci-el8-oneapi +docker tag adios2:ci-el8-intel ghcr.io/ornladios/adios2:ci-el8-icc + +# Push them +docker push ghcr.io/ornladios/adios2:ci-el8-oneapi +docker push ghcr.io/ornladios/adios2:ci-el8-icc diff --git a/scripts/ci/images-v2/build-functions.sh b/scripts/ci/images-v2/build-functions.sh deleted file mode 100644 index 9805c7302e..0000000000 --- a/scripts/ci/images-v2/build-functions.sh +++ /dev/null @@ -1,73 +0,0 @@ -function message1() { - echo "" - echo "****************************************" - printf '* %-36s *\n' "$1" - echo "****************************************" - echo "" -} - -function build_squash() -{ - local FROM=$1 - local TO=$2 - local DOCKERFILE=$3 - local ARGS="$4" - - if [ "${ADIOS2_CI_NO_SQUASH}" = "1" ] - then - echo "*" - echo "* Building ${TO}" - echo "*" - if ! docker build --rm ${ARGS} -t ${TO} -f ${DOCKERFILE} . - then - echo "Error: Failed to build ${TO} image" - return 1 - fi - else - echo "*" - echo "* Building ${TO}-tmp" - echo "*" - if ! docker build --rm ${ARGS} -t ${TO}-tmp -f ${DOCKERFILE} . - then - echo "Error: Failed to build ${TO}-tmp image" - return 1 - fi - echo "*" - echo "* Squashing:" - echo "* from ${FROM}" - echo "* to ${TO}-tmp" - echo "* as ${TO}" - echo "*" - docker-squash -c -f ${FROM} -t ${TO} ${TO}-tmp - fi - return 0 -} - -function build_leafs() -{ - local IMG_BASE=$1 - local SPACK_ID=$2 - - message1 "Building ${IMG_BASE}-serial image" - if ! build_squash \ - ornladios/adios2:ci-spack-el8-${IMG_BASE}-base \ - ornladios/adios2:ci-spack-el8-${IMG_BASE}-serial \ - Dockerfile.ci-spack-el8-leaf \ - "--build-arg COMPILER_IMG_BASE=${IMG_BASE} --build-arg COMPILER_SPACK_ID=${SPACK_ID} --build-arg EXTRA_VARIANTS=~mpi" - then - echo "Error: Failed to build ${IMG_BASE}-serial image" - return 1 - fi - - message1 "Building ${IMG_BASE}-mpi image" - if ! build_squash \ - ornladios/adios2:ci-spack-el8-${IMG_BASE}-base \ - ornladios/adios2:ci-spack-el8-${IMG_BASE}-mpi \ - Dockerfile.ci-spack-el8-leaf \ - "--build-arg COMPILER_IMG_BASE=${IMG_BASE} --build-arg COMPILER_SPACK_ID=${SPACK_ID} --build-arg EXTRA_VARIANTS=+mpi" - then - echo "Error: Failed to build ${IMG_BASE}-mpi image" - return 2 - fi - return 0 -} diff --git a/scripts/ci/images-v2/build-gcc-base.sh b/scripts/ci/images-v2/build-gcc-base.sh deleted file mode 100755 index 3f709423ee..0000000000 --- a/scripts/ci/images-v2/build-gcc-base.sh +++ /dev/null @@ -1,18 +0,0 @@ -#!/bin/bash -set +e - -BASE_DIR=$(dirname $(readlink -f ${BASH_SOURCE})) -source "${BASE_DIR}/build-functions.sh" - -for ver in 8 9 10 11 -do - message1 "Building gcc${ver} base image" - if ! build_squash \ - ornladios/adios2:ci-spack-el8-base \ - ornladios/adios2:ci-spack-el8-gcc${ver}-base \ - Dockerfile.ci-spack-el8-gcc${ver}-base - then - echo "Error: Failed to build gcc${ver} base image" - exit 3 - fi -done diff --git a/scripts/ci/images-v2/build-gcc.sh b/scripts/ci/images-v2/build-gcc.sh deleted file mode 100755 index a483addeac..0000000000 --- a/scripts/ci/images-v2/build-gcc.sh +++ /dev/null @@ -1,35 +0,0 @@ -#!/bin/bash -set +e -set -x - -BASE_DIR=$(dirname $(readlink -f ${BASH_SOURCE})) -source "${BASE_DIR}/build-functions.sh" - -for ver in 8 9 10 11 -do - message1 "Building gcc${ver}-serial image" - if ! build_squash \ - ornladios/adios2:ci-spack-el8-gcc${ver}-base \ - ornladios/adios2:ci-spack-el8-gcc${ver}-serial \ - Dockerfile.ci-spack-el8-leaf \ - "--build-arg COMPILER_IMG_BASE=gcc${ver} - --build-arg COMPILER_SPACK_ID=gcc - --build-arg=MPI_VARIANT=~mpi" - then - echo "Error: Failed to build gcc${ver}-serial image" - exit 3 - fi - - message1 "Building gcc${ver}-mpi image" - if ! build_squash \ - ornladios/adios2:ci-spack-el8-gcc${ver}-base \ - ornladios/adios2:ci-spack-el8-gcc${ver}-mpi \ - Dockerfile.ci-spack-el8-leaf \ - "--build-arg COMPILER_IMG_BASE=gcc${ver} - --build-arg COMPILER_SPACK_ID=gcc - --build-arg=MPI_VARIANT=+mpi" - then - echo "Error: Failed to build gcc${ver}-mpi image" - exit 3 - fi -done diff --git a/scripts/ci/images-v2/build-intel-base.sh b/scripts/ci/images-v2/build-intel-base.sh deleted file mode 100755 index 264496d485..0000000000 --- a/scripts/ci/images-v2/build-intel-base.sh +++ /dev/null @@ -1,36 +0,0 @@ -#!/bin/bash -set +e - -BASE_DIR=$(dirname $(readlink -f ${BASH_SOURCE})) -source "${BASE_DIR}/build-functions.sh" - -message1 "Building intel base image" -if ! build_squash \ - ornladios/adios2:ci-spack-el8-base \ - ornladios/adios2:ci-spack-el8-intel-base \ - Dockerfile.ci-spack-el8-intel-base -then - echo "Error: Failed to build intel base image" - exit 3 -fi - -message1 "Building icc base image" -if ! build_squash \ - ornladios/adios2:ci-spack-el8-intel-base \ - ornladios/adios2:ci-spack-el8-icc-base \ - Dockerfile.ci-spack-el8-icc-base -then - echo "Error: Failed to build icc base image" - exit 3 -fi - -message1 "Building oneapi base image" -ADIOS2_CI_NO_SQUASH=1 -if ! build_squash \ - ornladios/adios2:ci-spack-el8-intel-base \ - ornladios/adios2:ci-spack-el8-oneapi-base \ - Dockerfile.ci-spack-el8-oneapi-base -then - echo "Error: Failed to build oneapi base image" - exit 3 -fi diff --git a/scripts/ci/images-v2/build-intel.sh b/scripts/ci/images-v2/build-intel.sh deleted file mode 100755 index 7c80d6f9b9..0000000000 --- a/scripts/ci/images-v2/build-intel.sh +++ /dev/null @@ -1,13 +0,0 @@ -#!/bin/bash -BASE_DIR=$(dirname $(readlink -f ${BASH_SOURCE})) -source "${BASE_DIR}/build-functions.sh" - -if ! build_leafs icc intel -then - exit 1 -fi - -if ! build_leafs oneapi oneapi -then - exit 2 -fi diff --git a/scripts/ci/images-v2/build-mpich.sh b/scripts/ci/images-v2/build-mpich.sh deleted file mode 100755 index d53c4c9402..0000000000 --- a/scripts/ci/images-v2/build-mpich.sh +++ /dev/null @@ -1,20 +0,0 @@ -#!/bin/bash -set -ex - -BASE_DIR=$(dirname $(readlink -f ${BASH_SOURCE})) -source "${BASE_DIR}/build-functions.sh" - -message1 "Building ci-spack-el8 leaf image" -build_conf=gcc10 -if ! build_squash \ - ornladios/adios2:ci-spack-el8-gcc10-base \ - ornladios/adios2:ci-spack-el8-gcc10-mpich \ - Dockerfile.ci-spack-el8-leaf \ - "--build-arg=COMPILER_IMG_BASE=${build_conf} - --build-arg=COMPILER_SPACK_ID=gcc - --build-arg=MPI_PROVIDER=mpich - --build-arg=MPI_VARIANT=+mpi" -then - echo "Error: Failed to build ci-spack-el8 leaf image" - exit 3 -fi diff --git a/scripts/ci/images-v2/build-nvhpc.sh b/scripts/ci/images-v2/build-nvhpc.sh deleted file mode 100755 index 586e660439..0000000000 --- a/scripts/ci/images-v2/build-nvhpc.sh +++ /dev/null @@ -1,25 +0,0 @@ -#!/bin/bash -BASE_DIR=$(dirname $(readlink -f ${BASH_SOURCE})) -source "${BASE_DIR}/build-functions.sh" - -message1 "Building nvhpc222 serial image" -if ! build_squash \ - ornladios/adios2:ci-spack-el8-gcc8-serial \ - ornladios/adios2:ci-spack-el8-nvhpc222-serial \ - Dockerfile.ci-spack-el8-nvhpc222-leaf \ - "--build-arg PARALLEL=serial" -then - echo "Error: Failed to build nvhpc222 serial image" - exit 3 -fi - -message1 "Building nvhpc222 mpi image" -if ! build_squash \ - ornladios/adios2:ci-spack-el8-gcc8-mpi \ - ornladios/adios2:ci-spack-el8-nvhpc222-mpi \ - Dockerfile.ci-spack-el8-nvhpc222-leaf \ - "--build-arg PARALLEL=mpi" -then - echo "Error: Failed to build nvhpc222 mpi image" - exit 3 -fi diff --git a/scripts/ci/images-v2/build-ubuntu.sh b/scripts/ci/images-v2/build-ubuntu.sh new file mode 100755 index 0000000000..051ec026e2 --- /dev/null +++ b/scripts/ci/images-v2/build-ubuntu.sh @@ -0,0 +1,34 @@ +#~/bin/bash + +set -ex + +# Build the base image +docker build --rm -f ./Dockerfile.ci-spack-ubuntu20.04-base -t adios2:ci-spack-ubuntu20.04-base . + +# Which is also the gcc11 image +docker tag adios2:ci-spack-ubuntu20.04-base adios2:ci-spack-ubuntu20.04-gcc11 + +# Build the gcc8, gcc9, and gcc10 images +docker build --rm --build-arg GCC_VERSION=8 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t adios2:ci-spack-ubuntu20.04-gcc8 . +docker build --rm --build-arg GCC_VERSION=9 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t adios2:ci-spack-ubuntu20.04-gcc9 . +docker build --rm --build-arg GCC_VERSION=10 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t adios2:ci-spack-ubuntu20.04-gcc10 . + +# Build the clang6 and clang10 images +docker build --rm --build-arg CLANG_VERSION=6.0 -f ./Dockerfile.ci-spack-ubuntu20.04-clang -t adios2:ci-spack-ubuntu20.04-clang6 . +docker build --rm --build-arg CLANG_VERSION=10 -f ./Dockerfile.ci-spack-ubuntu20.04-clang -t adios2:ci-spack-ubuntu20.04-clang10 . + +# Tag images for pushing +docker tag adios2:ci-spack-ubuntu20.04-gcc8 ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc8 +docker tag adios2:ci-spack-ubuntu20.04-gcc9 ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc9 +docker tag adios2:ci-spack-ubuntu20.04-gcc10 ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc10 +docker tag adios2:ci-spack-ubuntu20.04-gcc11 ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc11 +docker tag adios2:ci-spack-ubuntu20.04-clang6 ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang6 +docker tag adios2:ci-spack-ubuntu20.04-clang10 ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang10 + +# Push images to github container registry +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc8 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc9 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc10 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc11 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang6 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang10 diff --git a/scripts/ci/images-v2/build.sh b/scripts/ci/images-v2/build.sh deleted file mode 100755 index c269a0a633..0000000000 --- a/scripts/ci/images-v2/build.sh +++ /dev/null @@ -1,135 +0,0 @@ -#!/bin/bash - -function message1() { - echo "" - echo "****************************************" - printf '* %-36s *\n' "$1" - echo "****************************************" - echo "" -} - -function build_squash() { - local FROM=$1 - local TO=$2 - local DF=$3 - local ARGS="$4" - - echo "*" - echo "* Building $TO" - echo "*" - if ! docker build --rm $ARGS -t $TO -f $DF . - then - echo "Error: Failed to build $TO image" - return 1 - fi - echo "*" - echo "* Squashing:" - echo "* from $FROM" - echo "* to $TO" - echo "* as $TO" - echo "*" - docker-squash -f $FROM -t $TO $TO - return 0 -} - -enable_base=0 -enable_inter=0 -enable_gcc=0 -enable_clang=0 -enable_intel=0 -enable_nvhpc=0 -enable_serial=0 -enable_mpi=0 - -while [ $# -gt 0 ] -do - case $1 in - base) enable_base=1;; - no_base) enable_base=0;; - inter) enable_inter=1;; - no_inter) enable_inter=0;; - gcc) enable_gcc=1;; - no_gcc) enable_gcc=0;; - clang) enable_clang=1;; - no_clang) enable_clang=0;; - intel) enable_intel=1;; - no_intel) enable_intel=0;; - nvhpc) enable_nvhpc=1;; - no_nvhpc) enable_nvhpc=0;; - serial) enable_serial=1;; - no_serial) enable_serial=0;; - mpi) enable_mpi=1;; - no_mpi) enable_mpi=0;; - *) - echo "Error: Unknown option: $1" - exit 1;; - esac - shift -done - -if [ $enable_base -eq 1 ] -then - message1 "Building ci base image" - if ! build_squash \ - almalinux:8 \ - ornladios/adios2:ci-spack-el8-base \ - Dockerfile.ci-spack-el8-base - then - echo "Error: Failed to build base image" - exit 2 - fi -fi - - -if [ $enable_inter -eq 1 ] -then - for COMPILER in gcc clang intel nvhpc - do - enabled_var="enable_$COMPILER" - if [ ${!enabled_var} -eq 1 ] - then - message1 "Building $COMPILER base image" - if ! build_squash \ - ornladios/adios2:ci-spack-el8-base \ - ornladios/adios2:ci-spack-el8-${COMPILER}-base \ - Dockerfile.ci-spack-el8-${COMPILER}-base - then - echo "Error: Failed to build ${COMPILER}-base image" - exit 3 - fi - fi - done -fi - -if [ $enable_serial -eq 0 ] && [ $enable_mpi -eq 0 ] -then - exit -fi - -for COMPILER in gcc clang intel nvhpc -do - enabled_var="enable_$COMPILER" - if [[ ${!enabled_var} -eq 0 ]] - then - continue - fi - - if [ $enable_serial -eq 1 ] - then - message1 "Building $COMPILER serial image" - build_squash \ - ornladios/adios2:ci-spack-el8-${COMPILER}-base \ - ornladios/adios2:ci-spack-el8-$COMPILER-serial \ - Dockerfile.ci-spack-el8-serial \ - "--build-arg COMPILER=$COMPILER" - fi - if [ $enable_mpi -eq 1 ] - then - message1 "Building $COMPILER mpi image" - build_squash \ - ornladios/adios2:ci-spack-el8-$COMPILER-serial \ - ornladios/adios2:ci-spack-el8-$COMPILER-mpi \ - Dockerfile.ci-spack-el8-mpi \ - "--build-arg COMPILER=$COMPILER" - fi -done diff --git a/scripts/ci/images-v2/gcc-toolset-module.tcl b/scripts/ci/images-v2/gcc-toolset-module.tcl deleted file mode 100644 index bc71576db0..0000000000 --- a/scripts/ci/images-v2/gcc-toolset-module.tcl +++ /dev/null @@ -1,10 +0,0 @@ -#%Module1.0 - -set gcchome /opt/rh/gcc-toolset-TOOLSET/root - -prepend-path PATH $gcchome/usr/bin -prepend-path MANPATH $gcchome/usr/share/man -prepend-path INFOPATH $gcchome/usr/share/info -prepend-path PCP_DIR $gcchome -prepend-path LD_LIBRARY_PATH $gcchome/usr/lib64:$gcchome/usr/lib:$gcchome/usr/lib64/dyninst:$gcchome/usr/lib/dyninst -prepend-path PKG_CONFIG_PATH $gcchome/usr/lib64/pkgconfig diff --git a/scripts/ci/images-v2/modules.yaml b/scripts/ci/images-v2/modules.yaml deleted file mode 100644 index 583ff26fbe..0000000000 --- a/scripts/ci/images-v2/modules.yaml +++ /dev/null @@ -1,10 +0,0 @@ -modules: - default: - enable: - - tcl - tcl: - hash_length: 0 - all: - autoload: 'direct' - projections: - all: '{name}/{version}' diff --git a/scripts/ci/images-v2/packages.yaml b/scripts/ci/images-v2/packages.yaml new file mode 100644 index 0000000000..3ee74eaa66 --- /dev/null +++ b/scripts/ci/images-v2/packages.yaml @@ -0,0 +1,7 @@ +packages: + all: + target: [haswell] + adios2: + require: +blosc+bzip2+zfp+sz+png+sst+dataman+ssc+hdf5+python+fortran + cmake: + version: [3.24] diff --git a/scripts/ci/images-v2/packages.yaml.in b/scripts/ci/images-v2/packages.yaml.in deleted file mode 100644 index 2039f42305..0000000000 --- a/scripts/ci/images-v2/packages.yaml.in +++ /dev/null @@ -1,16 +0,0 @@ -packages: - all: - target: [haswell] - providers: - mpi: [$(MPI_PROVIDER)] - adios2: - variants: $(MPI_VARIANT)+blosc+bzip2+zfp+sz+png+sst+dataman+ssc+hdf5+python+fortran - cmake: - version: [3.24] - mpich: - version: [3.3.2] - variants: device=ch3 netmod=tcp -$if(DEVICE == "CUDA")\ - zfp: - variants: +cuda+shared -$endif\ diff --git a/scripts/ci/images-v2/specs.yaml b/scripts/ci/images-v2/specs.yaml new file mode 100644 index 0000000000..e67f9a7f8f --- /dev/null +++ b/scripts/ci/images-v2/specs.yaml @@ -0,0 +1,6 @@ +spack: + view: true + config: + checksum: false + concretizer: + unify: false diff --git a/scripts/ci/images-v2/specs.yaml.in b/scripts/ci/images-v2/specs.yaml.in deleted file mode 100644 index 23ed3450d5..0000000000 --- a/scripts/ci/images-v2/specs.yaml.in +++ /dev/null @@ -1,15 +0,0 @@ -$default(COMPILER="gcc",COMPILER_IMG_BASE="",DEVICE="BASE")\ -spack: - specs: - - libsodium%$(COMPILER) -$if(DEVICE == "CUDA")\ - - kokkos@3.7.00%gcc+cuda+wrapper+cuda_lambda cuda_arch=52 -$endif\ -$if(COMPILER_IMG_BASE == "gcc10")\ - - libcatalyst@3f7871c0a2e737cb9ed35fc1c2208456fcc00a0e%$(COMPILER)$(MPI_VARIANT) -$endif\ - view: true - config: - checksum: false - concretizer: - unify: false diff --git a/scripts/ci/setup-run/ci-el8-gcc10.sh b/scripts/ci/setup-run/ci-el8-gcc10.sh deleted file mode 100644 index 82ecc2b734..0000000000 --- a/scripts/ci/setup-run/ci-el8-gcc10.sh +++ /dev/null @@ -1 +0,0 @@ -module load gcc-10 diff --git a/scripts/ci/setup-run/ci-el8-gcc11.sh b/scripts/ci/setup-run/ci-el8-gcc11.sh deleted file mode 100644 index d18168dda5..0000000000 --- a/scripts/ci/setup-run/ci-el8-gcc11.sh +++ /dev/null @@ -1 +0,0 @@ -module load gcc-11 diff --git a/scripts/ci/setup-run/ci-el8-gcc9.sh b/scripts/ci/setup-run/ci-el8-gcc9.sh deleted file mode 100644 index 00a701fed4..0000000000 --- a/scripts/ci/setup-run/ci-el8-gcc9.sh +++ /dev/null @@ -1 +0,0 @@ -module load gcc-9 diff --git a/scripts/ci/setup-run/ci-el8-icc.sh b/scripts/ci/setup-run/ci-el8-icc.sh index 57c0ff934c..e0e8b513b3 100644 --- a/scripts/ci/setup-run/ci-el8-icc.sh +++ b/scripts/ci/setup-run/ci-el8-icc.sh @@ -1 +1,3 @@ +#!/bin/bash + module load icc diff --git a/scripts/ci/setup-run/ci-el8-nvhpc222-mpi.sh b/scripts/ci/setup-run/ci-el8-nvhpc222-mpi.sh deleted file mode 100644 index 14b096a909..0000000000 --- a/scripts/ci/setup-run/ci-el8-nvhpc222-mpi.sh +++ /dev/null @@ -1,2 +0,0 @@ -module unload $(module -t --redirect avail openmpi) -source $(dirname $(readlink -f ${BASH_SOURCE}))/ci-el8-nvhpc222.sh diff --git a/scripts/ci/setup-run/ci-el8-nvhpc222.sh b/scripts/ci/setup-run/ci-el8-nvhpc222.sh deleted file mode 100644 index 314ad72a51..0000000000 --- a/scripts/ci/setup-run/ci-el8-nvhpc222.sh +++ /dev/null @@ -1 +0,0 @@ -module load nvhpc diff --git a/scripts/ci/setup-run/ci-el8-oneapi.sh b/scripts/ci/setup-run/ci-el8-oneapi.sh index cf19fa4b7d..ddcc7140d1 100644 --- a/scripts/ci/setup-run/ci-el8-oneapi.sh +++ b/scripts/ci/setup-run/ci-el8-oneapi.sh @@ -1,2 +1,4 @@ +#!/bin/bash + module load icc module load compiler diff --git a/scripts/ci/setup-run/ci-ubuntu20.04-clang10.sh b/scripts/ci/setup-run/ci-ubuntu20.04-clang10.sh new file mode 100644 index 0000000000..2909cd86b5 --- /dev/null +++ b/scripts/ci/setup-run/ci-ubuntu20.04-clang10.sh @@ -0,0 +1,3 @@ +#!/bin/bash + +spack env activate "adios2-ci-${GH_YML_MATRIX_PARALLEL}" diff --git a/scripts/ci/setup-run/ci-ubuntu20.04-clang6.sh b/scripts/ci/setup-run/ci-ubuntu20.04-clang6.sh new file mode 100644 index 0000000000..2909cd86b5 --- /dev/null +++ b/scripts/ci/setup-run/ci-ubuntu20.04-clang6.sh @@ -0,0 +1,3 @@ +#!/bin/bash + +spack env activate "adios2-ci-${GH_YML_MATRIX_PARALLEL}" diff --git a/scripts/ci/setup-run/ci-ubuntu20.04-gcc10.sh b/scripts/ci/setup-run/ci-ubuntu20.04-gcc10.sh new file mode 100644 index 0000000000..74113665a3 --- /dev/null +++ b/scripts/ci/setup-run/ci-ubuntu20.04-gcc10.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +update-alternatives --set gcc "$(update-alternatives --list gcc | grep gcc-10)" +update-alternatives --set g++ "$(update-alternatives --list g++ | grep g++-10)" +update-alternatives --set gfortran "$(update-alternatives --list gfortran | grep gfortran-10)" + +spack env activate "adios2-ci-${GH_YML_MATRIX_PARALLEL}" diff --git a/scripts/ci/setup-run/ci-ubuntu20.04-gcc11.sh b/scripts/ci/setup-run/ci-ubuntu20.04-gcc11.sh new file mode 100644 index 0000000000..d5954614d0 --- /dev/null +++ b/scripts/ci/setup-run/ci-ubuntu20.04-gcc11.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +update-alternatives --set gcc "$(update-alternatives --list gcc | grep gcc-11)" +update-alternatives --set g++ "$(update-alternatives --list g++ | grep g++-11)" +update-alternatives --set gfortran "$(update-alternatives --list gfortran | grep gfortran-11)" + +spack env activate "adios2-ci-${GH_YML_MATRIX_PARALLEL}" diff --git a/scripts/ci/setup-run/ci-ubuntu20.04-gcc8.sh b/scripts/ci/setup-run/ci-ubuntu20.04-gcc8.sh new file mode 100644 index 0000000000..942a57eb02 --- /dev/null +++ b/scripts/ci/setup-run/ci-ubuntu20.04-gcc8.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +update-alternatives --set gcc "$(update-alternatives --list gcc | grep gcc-8)" +update-alternatives --set g++ "$(update-alternatives --list g++ | grep g++-8)" +update-alternatives --set gfortran "$(update-alternatives --list gfortran | grep gfortran-8)" + +spack env activate "adios2-ci-${GH_YML_MATRIX_PARALLEL}" diff --git a/scripts/ci/setup-run/ci-ubuntu20.04-gcc9.sh b/scripts/ci/setup-run/ci-ubuntu20.04-gcc9.sh new file mode 100644 index 0000000000..de5e08fb87 --- /dev/null +++ b/scripts/ci/setup-run/ci-ubuntu20.04-gcc9.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +update-alternatives --set gcc "$(update-alternatives --list gcc | grep gcc-9)" +update-alternatives --set g++ "$(update-alternatives --list g++ | grep g++-9)" +update-alternatives --set gfortran "$(update-alternatives --list gfortran | grep gfortran-9)" + +spack env activate "adios2-ci-${GH_YML_MATRIX_PARALLEL}" From 74c5b9db5c5a4aefae657b06da32150a52ee1a76 Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Fri, 7 Jul 2023 17:01:18 -0600 Subject: [PATCH 032/183] Fix warnings newly detected by latest oneapi --- source/adios2/engine/bp5/BP5Reader.cpp | 13 +------------ source/adios2/engine/dataman/DataManWriter.cpp | 2 -- 2 files changed, 1 insertion(+), 14 deletions(-) diff --git a/source/adios2/engine/bp5/BP5Reader.cpp b/source/adios2/engine/bp5/BP5Reader.cpp index 673dbfbd61..21322000c2 100644 --- a/source/adios2/engine/bp5/BP5Reader.cpp +++ b/source/adios2/engine/bp5/BP5Reader.cpp @@ -385,20 +385,9 @@ void BP5Reader::PerformGets() }*/ // wait for all async threads - int tid = 1; for (auto &f : futures) { - /*auto t = */ f.get(); - /*double tSubfile = std::get<0>(t); - double tRead = std::get<1>(t); - double tCopy = std::get<2>(t); - size_t nReads = std::get<3>(t); - std::cout << " -> PerformGets() thread " << tid - << " total = " << tSubfile + tRead + tCopy - << "s, subfile = " << tSubfile << "s, read = " << tRead - << "s, copy = " << tCopy << ", nReads = " << nReads - << std::endl;*/ - ++tid; + f.get(); } } else diff --git a/source/adios2/engine/dataman/DataManWriter.cpp b/source/adios2/engine/dataman/DataManWriter.cpp index 2cd2e17e0e..5cc95578c6 100644 --- a/source/adios2/engine/dataman/DataManWriter.cpp +++ b/source/adios2/engine/dataman/DataManWriter.cpp @@ -365,7 +365,6 @@ void DataManWriter::Handshake() void DataManWriter::ReplyThread() { - int readerCount = 0; while (m_ReplyThreadActive) { auto request = m_Replier.ReceiveRequest(); @@ -384,7 +383,6 @@ void DataManWriter::ReplyThread() else if (r == "Ready") { m_Replier.SendReply("OK", 2); - ++readerCount; } else if (r == "Step") { From 307f69c3feebc3c1a24b6ed05aef1a043e1879fb Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Sat, 15 Jul 2023 01:24:04 +0000 Subject: [PATCH 033/183] build(deps): bump cryptography from 41.0.0 to 41.0.2 in /docs Bumps [cryptography](https://github.com/pyca/cryptography) from 41.0.0 to 41.0.2. - [Changelog](https://github.com/pyca/cryptography/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pyca/cryptography/compare/41.0.0...41.0.2) --- updated-dependencies: - dependency-name: cryptography dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- docs/requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/requirements.txt b/docs/requirements.txt index ab7566389f..8c666d4748 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -7,7 +7,7 @@ certifi==2022.12.7 cffi==1.15.1 charset-normalizer==2.1.1 colorama==0.4.6 -cryptography==41.0.0 +cryptography==41.0.2 docutils==0.17 funcparserlib==1.0.1 idna==3.4 From 39c1fe54885d51bba0053ad5441ba9720cf0dd5c Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Mon, 17 Jul 2023 21:28:35 -0400 Subject: [PATCH 034/183] added gitattributes file --- .gitattributes | 22 + source/h5vol/H5VolReadWrite.c | 2260 ++++++++++++++++----------------- 2 files changed, 1152 insertions(+), 1130 deletions(-) create mode 100644 .gitattributes diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 0000000000..e59188800a --- /dev/null +++ b/.gitattributes @@ -0,0 +1,22 @@ +# Set the default behavior, in case people don't have core.autocrlf set. +* text=auto + +# Explicitly declare text files you want to always be normalized and converted +# to native line endings on checkout. +*.cxx text +*.h text +*.hxx text +*.tcc text +*.cu text +*.c text +*.h text +*.py text +*.f90 text +*.F90 text +*.sh text + +*.cmake whitespace=tab-in-indent +*.md whitespace=tab-in-indent whitespace=-blank-at-eol conflict-marker-size=79 +*.rst whitespace=tab-in-indent conflict-marker-size=79 +*.txt whitespace=tab-in-indent +*.xml whitespace=tab-in-indent diff --git a/source/h5vol/H5VolReadWrite.c b/source/h5vol/H5VolReadWrite.c index 5633eaf03d..aedb836e05 100644 --- a/source/h5vol/H5VolReadWrite.c +++ b/source/h5vol/H5VolReadWrite.c @@ -1,1130 +1,1130 @@ -#include "H5VLpublic.h" -#include "hdf5.h" -#define H5S_FRIEND // suppress error for H5Spkg -#define H5O_FRIEND // suppress error for H5Opkg - -#include -#include -#include -#include - -#if ADIOS2_USE_MPI -#include -#endif - -#include "H5Epublic.h" -#include "H5VolReadWrite.h" - -#include "H5VolUtil.h" - -#ifdef HAVE_UNISTD_H -#include // sleep -#elif defined HAVE_WINDOWS_H -#include -#define sleep(x) Sleep(1000 * (x)) -#endif - -// these are in h5private.h -#define SUCCEED 1 -#define FAIL 0 - -static hid_t H5VL_ADIOS_g = -1; - -static adios2_adios *m_ADIOS2 = NULL; -// static adios2_io *m_IO = NULL; -static int m_MPIRank = 0; - -#define RANK_ZERO_MSG(...) \ - { \ - if (0 == m_MPIRank) \ - { \ - fprintf(stderr, "## VOL info:"); \ - fprintf(stderr, __VA_ARGS__); \ - fflush(stderr); \ - } \ - } - -void gGenerateFullPath(char *fullPath, const char *parentPath, const char *name) -{ - size_t ps = strlen(parentPath); - size_t ns = strlen(name); - size_t length = ps; - bool startsWithDotSlash = - ((ns > 1) && ('/' == name[1]) && ('.' == name[0])); - - if ('/' == parentPath[ps - 1]) - { - if (startsWithDotSlash) - { - sprintf(fullPath, "%s%s", parentPath, name + 2); - length += ns - 2; - } - else - { - sprintf(fullPath, "%s%s", parentPath, name); - length += ns; - } - } - else - { - if (startsWithDotSlash) - { - sprintf(fullPath, "%s/%s", parentPath, name + 2); - length += 1 + ns - 2; - } - else - { - sprintf(fullPath, "%s/%s", parentPath, name); - length += 1 + ns; - } - } - fullPath[length] = '\0'; -} - -herr_t H5VL_adios2_begin_read_step(const char *filename) -{ - return H5VL_adios2_beginstep(filename, adios2_step_mode_read); -} - -herr_t H5VL_adios2_begin_write_step(const char *filename) -{ - return H5VL_adios2_beginstep(filename, adios2_step_mode_append); -} - -herr_t H5VL_adios2_beginstep(const char *filename, adios2_step_mode m) -{ - adios2_io *m_IO = adios2_at_io(m_ADIOS2, filename); - adios2_engine *currEngine = adios2_get_engine(m_IO, filename); - if (NULL == currEngine) - return -1; - - adios2_step_status status; - adios2_begin_step(currEngine, m, 0.0, &status); - - if (adios2_step_status_end_of_stream == status) - { - RANK_ZERO_MSG("..end_of_stream \n"); - return -1; - } - else if (adios2_step_status_not_ready == status) - { - RANK_ZERO_MSG(".. not ready \n"); - while (adios2_step_status_not_ready == status) - { - sleep(1); - adios2_begin_step(currEngine, m, 0.0, &status); - } - RANK_ZERO_MSG("... other status \n"); - if (adios2_step_status_ok == status) - { - return 0; - } - return -1; - } - else if (adios2_step_status_ok == status) - { - RANK_ZERO_MSG(".. stream ready \n"); - return 0; - } - return -1; -} - -herr_t H5VL_adios2_endstep(const char *filename) -{ - adios2_io *m_IO = adios2_at_io(m_ADIOS2, filename); - adios2_engine *engine = adios2_get_engine(m_IO, filename); - if (NULL == engine) - return -1; - - adios2_end_step(engine); - return 0; -} - -void gInitADIOS2(hid_t acc_tpl) -{ - if (NULL != m_ADIOS2) - return; - -#if ADIOS2_USE_MPI - int flag = 0; - MPI_Initialized(&flag); - if (!flag) - { - RANK_ZERO_MSG("H5VL_ADIOS2 WARNING: MPI is not initialized, will use " - "Serial ADIOS\n"); - m_ADIOS2 = adios2_init_serial(); - } - else - { - MPI_Comm comm = MPI_COMM_WORLD; - if (H5Pget_driver(acc_tpl) == H5FD_MPIO) - { - MPI_Info info; - H5Pget_fapl_mpio(acc_tpl, &comm, &info); - // int rank; - } - MPI_Comm_rank(comm, &m_MPIRank); - m_ADIOS2 = adios2_init_mpi(comm); - } -#else - m_ADIOS2 = adios2_init_serial(); -#endif - REQUIRE_NOT_NULL(m_ADIOS2); -} - -void gExitADIOS2() -{ - if (NULL == m_ADIOS2) - return; - adios2_remove_all_ios(m_ADIOS2); - adios2_finalize(m_ADIOS2); - m_ADIOS2 = NULL; -} - -void loadPath(H5VL_ObjDef_t *result, const char *name, H5VL_ObjDef_t *parent) -{ - if (NULL == parent->m_Path) - { - result->m_Path = (char *)(SAFE_CALLOC(strlen(name) + 1, sizeof(char))); - strcpy(result->m_Path, name); - result->m_Path[strlen(name)] = '\0'; - } - else if ((strlen(parent->m_Path) == 1) && (parent->m_Path[0] == '/')) - { - result->m_Path = (char *)(SAFE_CALLOC(strlen(name) + 2, sizeof(char))); - sprintf(result->m_Path, "%s%s", parent->m_Path, name); - result->m_Path[strlen(name) + 1] = '\0'; - } - else - { - size_t size = strlen(name) + strlen(parent->m_Path) + 1; - if (parent->m_Path[strlen(parent->m_Path) - 1] == '/') - { - size = size - 1; - result->m_Path = (char *)(SAFE_CALLOC(size + 1, sizeof(char))); - sprintf(result->m_Path, "%s%s", parent->m_Path, name); - } - else - { - result->m_Path = (char *)(SAFE_CALLOC(size + 1, sizeof(char))); - sprintf(result->m_Path, "%s/%s", parent->m_Path, name); - } - // result->m_Path= - // (char*)(SAFE_CALLOC(strlen(name)+4+strlen(parent->m_Path), - // sizeof(char))); - result->m_Path[size] = '\0'; - } -} - -H5VL_ObjDef_t *initVolObj(H5VL_ObjDef_t *parent) -{ - H5VL_ObjDef_t *result = - (H5VL_ObjDef_t *)SAFE_CALLOC(1, sizeof(H5VL_ObjDef_t)); - result->m_Parent = parent; - - result->m_ObjPtr = NULL; - result->m_Path = NULL; - result->m_SubGroupNames = NULL; - - result->m_NumAttrs = 0; - result->m_NumVars = 0; - result->m_NumSubGroups = 0; - - result->m_Vars = NULL; - result->m_Attrs = NULL; - - if (NULL == parent) - result->m_FileIO = NULL; - else - result->m_FileIO = parent->m_FileIO; - - return result; -} - -void gFreeVol(H5VL_ObjDef_t *vol) -{ - if (NULL == vol) - return; - - if (NULL != vol->m_Vars) - { - SAFE_FREE(vol->m_Vars); - } - - if (NULL != vol->m_Attrs) - { - SAFE_FREE(vol->m_Attrs); - } - - if (NULL != vol->m_SubGroupNames) - { - int i; - for (i = 0; i < vol->m_NumSubGroups; i++) - SAFE_FREE(vol->m_SubGroupNames[i]); - - SAFE_FREE(vol->m_SubGroupNames); - } - - SAFE_FREE(vol->m_Path); - SAFE_FREE(vol); - vol = NULL; -} - -void *gAttrToVolObj(H5VL_AttrDef_t *attr, H5VL_ObjDef_t *parent) -{ - H5VL_ObjDef_t *result = initVolObj(parent); - - result->m_ObjType = ATTR; - result->m_ObjPtr = attr; - - loadPath(result, attr->m_Name, parent); - return result; -} - -void *gGroupToVolObj(H5VL_GroupDef_t *group, H5VL_ObjDef_t *parent) -{ - H5VL_ObjDef_t *result = initVolObj(parent); - result->m_ObjType = GROUP; - result->m_ObjPtr = group; - - loadPath(result, group->m_Name, parent); - - return result; -} - -void *gVarToVolObj(H5VL_VarDef_t *var, H5VL_ObjDef_t *parent) -{ - H5VL_ObjDef_t *result = initVolObj(parent); - result->m_ObjType = VAR; - result->m_ObjPtr = var; - - loadPath(result, var->m_Name, parent); - return result; -} - -void *gFileToVolObj(H5VL_FileDef_t *f) -{ - H5VL_ObjDef_t *result = initVolObj(NULL); - result->m_ObjType = ROOT; - result->m_ObjPtr = f; - - result->m_FileIO = f->m_IO; - return result; -} - -adios2_attribute *gLocateAttrFrom(H5VL_ObjDef_t *owner, const char *attrName) -{ - if (NULL == owner) - return NULL; - - if (ROOT == owner->m_ObjType) - return adios2_inquire_attribute(owner->m_FileIO, attrName); - - if ((GROUP == owner->m_ObjType) || (VAR == owner->m_ObjType)) - { - size_t ss = strlen(owner->m_Path); - if ('/' == (owner->m_Path)[ss - 1]) - { - char fullPath[strlen(owner->m_Path) + 4 + strlen(attrName)]; - sprintf(fullPath, "%s%s", owner->m_Path, attrName); - return adios2_inquire_attribute(owner->m_FileIO, fullPath); - } - else - { - char fullPath[strlen(owner->m_Path) + 4 + strlen(attrName)]; - sprintf(fullPath, "%s/%s", owner->m_Path, attrName); - return adios2_inquire_attribute(owner->m_FileIO, fullPath); - } - } - return NULL; -} - -// -// returns 0 is obj_name is not under owner -// returns 1 is obj_name is under owner -// -htri_t gExistsUnderGrp(H5VL_ObjDef_t *owner, const char *obj_name) -{ - if (NULL == owner) - return 0; - - if (ROOT == owner->m_ObjType) - { - if (NULL != adios2_inquire_attribute(owner->m_FileIO, obj_name)) - return 1; - if (NULL != adios2_inquire_variable(owner->m_FileIO, obj_name)) - return 1; - return 0; - } - - if (GROUP != owner->m_ObjType) - return 0; - - char fullPath[strlen(owner->m_Path) + 4 + strlen(obj_name)]; - sprintf(fullPath, "%s/%s", owner->m_Path, obj_name); - - if (NULL != adios2_inquire_attribute(owner->m_FileIO, fullPath)) - return 1; - - if (NULL != adios2_inquire_variable(owner->m_FileIO, fullPath)) - return 1; - - return 0; -} - -// -// return: -// if obj_name is found and deleted. -// otherwise -// -bool gRemoveUnderGrp(H5VL_ObjDef_t *owner, const char *obj_name) -{ - if (NULL == owner) - return 0; - - adios2_bool result; - - if (ROOT == owner->m_ObjType) - { - if (adios2_error_none == - adios2_remove_attribute(&result, owner->m_FileIO, obj_name)) - if (adios2_true == result) - return true; - if (adios2_error_none == - adios2_remove_variable(&result, owner->m_FileIO, obj_name)) - if (adios2_true == result) - return true; - return false; - } - - if (GROUP != owner->m_ObjType) - return false; - - char fullPath[strlen(owner->m_Path) + 4 + strlen(obj_name)]; - gGenerateFullPath(fullPath, owner->m_Path, obj_name); - // sprintf(fullPath, "%s/%s", owner->m_Path, obj_name); - - if (adios2_error_none == - adios2_remove_attribute(&result, owner->m_FileIO, fullPath)) - if (adios2_true == result) - return true; - if (adios2_error_none == - adios2_remove_variable(&result, owner->m_FileIO, fullPath)) - if (adios2_true == result) - return true; - -#ifdef NEVER - return false; -#else - printf("\n......... NOTE: unable to remove GROUP %s \n\n", fullPath); - return true; -#endif -} - -void gLoadAttrDef(H5VL_AttrDef_t *attrDef) -{ - adios2_attribute *attr = attrDef->m_Attribute; - if (NULL == attr) - return; - - adios2_bool boolVal; - adios2_attribute_is_value(&boolVal, attr); - if (adios2_true == boolVal) - { - attrDef->m_SpaceID = H5Screate(H5S_SCALAR); - attrDef->m_Size = 1; - } - else - { - attrDef->m_IsScalar = false; - adios2_attribute_size(&(attrDef->m_Size), attr); - attrDef->m_SpaceID = H5Screate(H5S_SIMPLE); - // NOTE: adios only supports 1 dimension - hsize_t ss = (hsize_t)(attrDef->m_Size); - H5Sset_extent_simple(attrDef->m_SpaceID, 1, &ss, NULL); - } - - adios2_type adiosType; - adios2_attribute_type(&adiosType, attr); - attrDef->m_TypeID = gUtilHDF5Type(adiosType); - - /* - if (adios2_type_string == adiosType) { - char typeNameStr[30]; - size_t typeNameSize; - adios2_attribute_type_string (typeNameStr, &typeNameSize, attr); - // need a way to get actual string value size, not type sie - //printf(" string type= %s, name=%s, size= %lu\n", attrDef->m_Name, - typeNameStr, typeNameSize); - } - */ -} - -H5VL_ObjDef_t *gGetVarObjDef(const char *name, H5VL_ObjDef_t *vol) -{ - if (vol->m_ObjType == ROOT) - { // no vol->m_Path - if ((strlen(name) == 1) && (name[0] == '/')) - { - // root group, not var - return NULL; - } - H5VL_FileDef_t *handle = (H5VL_FileDef_t *)(vol->m_ObjPtr); - adios2_variable *var = gADIOS2InqVar(vol->m_FileIO, name); - if (NULL == var) - { - if (name[strlen(name) - 1] != '/') - { - SHOW_ERROR_MSG( - "H5VL_ADIOS2: Error: No such variable: %s in file\n ", - name); - return NULL; - } - - char *n = (char *)(SAFE_CALLOC(strlen(name) + 1, sizeof(char))); - strcpy(n, name); - n[strlen(name) - 1] = '\0'; - var = gADIOS2InqVar(vol->m_FileIO, n); - SAFE_FREE(n); - if (NULL == var) - { - return NULL; - } - } - H5VL_VarDef_t *varDef = - gCreateVarDef(name, handle->m_Engine, var, -1, -1); - return gVarToVolObj(varDef, vol); - } - - char fullPath[strlen(vol->m_Path) + 4 + strlen(name)]; - gGenerateFullPath(fullPath, vol->m_Path, name); - - if ('/' == name[strlen(name) - 1]) - { - fullPath[strlen(fullPath) - 1] = '\0'; - } - - adios2_variable *var = gADIOS2InqVar(vol->m_FileIO, fullPath); - if (NULL == var) - { - SHOW_ERROR_MSG("H5VL_ADIOS2: Error: No such variable:: %s in file\n ", - fullPath); - return NULL; - } - - H5VL_ObjDef_t *curr = vol; - while (curr) - { - if (curr->m_Parent == NULL) - { - H5VL_VarDef_t *varDef = gCreateVarDef( - fullPath, ((H5VL_FileDef_t *)(curr->m_ObjPtr))->m_Engine, var, - -1, -1); - - return gVarToVolObj(varDef, vol); - } - else - { - curr = curr->m_Parent; - } - } - - return NULL; -} - -H5VL_AttrDef_t *gCreateAttrDef(const char *name, hid_t type_id, hid_t space_id) -{ - H5VL_AttrDef_t *attrDef = - (H5VL_AttrDef_t *)SAFE_CALLOC(1, sizeof(H5VL_AttrDef_t)); - attrDef->m_Attribute = NULL; - attrDef->m_Size = 0; - - attrDef->m_Name = (char *)SAFE_CALLOC(strlen(name) + 1, sizeof(char)); - sprintf(attrDef->m_Name, "%s", name); - attrDef->m_Name[strlen(name)] = '\0'; - - attrDef->m_TypeID = type_id; - - attrDef->m_IsScalar = true; - - if (space_id != -1) // most likely from H5Dcreate - attrDef->m_SpaceID = H5Scopy(space_id); - else - attrDef->m_SpaceID = -1; - - return attrDef; -} - -H5VL_VarDef_t *gCreateVarDef(const char *name, adios2_engine *engine, - adios2_variable *var, hid_t space_id, - hid_t type_id) -{ - if ((-1 == type_id) && (NULL == var)) - { - printf("UNABLE to create var with unknown var _and_ unknown type"); - return NULL; - } - H5VL_VarDef_t *varDef = - (H5VL_VarDef_t *)SAFE_CALLOC(1, sizeof(H5VL_VarDef_t)); - varDef->m_Name = (char *)SAFE_CALLOC(strlen(name) + 1, sizeof(char)); - sprintf(varDef->m_Name, "%s", name); - - varDef->m_Engine = engine; - varDef->m_Variable = var; - varDef->m_DimCount = (size_t)-1; // default: unknown - varDef->m_TypeID = -1; // default: unknown - varDef->m_Data = NULL; - - if (space_id != -1) // most likely from H5Dcreate - { - varDef->m_ShapeID = H5Scopy(space_id); - varDef->m_DimCount = H5Sget_simple_extent_ndims(space_id); - } - else - { // likely from H5Dopen, so get space info from adios var: - REQUIRE_NOT_NULL_ERR(var, NULL); - size_t nDims; - if (adios2_error_none != adios2_variable_ndims(&nDims, var)) - { - SAFE_FREE(varDef); - return NULL; - } - - varDef->m_DimCount = nDims; - - size_t shape[nDims]; - if (adios2_error_none != adios2_variable_shape(shape, var)) - { - SAFE_FREE(varDef); - return NULL; - } - - hid_t filespace = H5Screate_simple(nDims, (hsize_t *)shape, NULL); - varDef->m_ShapeID = filespace; - } - - if (type_id != -1) - varDef->m_TypeID = type_id; - else - { - adios2_type adiosType; - adios2_variable_type(&adiosType, var); - varDef->m_TypeID = gUtilHDF5Type(adiosType); - - /* - if (adios2_type_string == adiosType) { - char typeNameStr[30]; - size_t typeNameSize; - adios2_variable_type_string (typeNameStr, &typeNameSize, var); - printf(" var type= %s\n", typeNameStr); - } - */ - } - - return varDef; -} - -H5VL_GroupDef_t *gCreateGroupDef(const char *name) -{ - H5VL_GroupDef_t *grp = - (H5VL_GroupDef_t *)SAFE_CALLOC(1, sizeof(H5VL_GroupDef_t)); - - grp->m_Name = (char *)SAFE_CALLOC(strlen(name) + 1, sizeof(char)); - sprintf(grp->m_Name, "%s", name); - - return grp; -} - -size_t gGetBranchNameLength(H5VL_ObjDef_t *vol, size_t namelen) -{ - if (vol->m_Path != NULL) - if ('/' == (vol->m_Path)[strlen(vol->m_Path) - 1]) - return namelen - strlen(vol->m_Path); // minus parent path - else - return namelen - strlen(vol->m_Path) - - 1; // minus parent path & seperator - else - return namelen; -} - -void gGetBranchName(H5VL_ObjDef_t *vol, const char *fullPath, char *name) -{ - size_t namelen = strlen(fullPath); - - if ('/' == (vol->m_Path)[strlen(vol->m_Path) - 1]) - // minus parent path & seperator - strncpy(name, fullPath + strlen(vol->m_Path), - namelen - strlen(vol->m_Path)); - else - strncpy(name, fullPath + strlen(vol->m_Path) + 1, - namelen - strlen(vol->m_Path) - 1); -} - -// -// returns length of name -// -size_t gGetNameOfNthAttr(H5VL_ObjDef_t *vol, uint32_t idx, char *name) -{ - gLoadContent(vol); - if (0 == vol->m_NumAttrs) - return 0; - - if (idx >= vol->m_NumAttrs) - return 0; - - adios2_attribute *curr = (vol->m_Attrs)[idx]; - - size_t namelen; - adios2_attribute_name(NULL, &namelen, curr); - - if ((NULL != name) && (NULL == vol->m_Path)) - adios2_attribute_name(name, &namelen, curr); - else if (NULL != name) - { - char fullPath[namelen + 1]; - adios2_attribute_name(fullPath, &namelen, curr); - fullPath[namelen] = '\0'; - - gGetBranchName(vol, fullPath, name); - // printf(".... [%s] vs [%s]\n", fullPath, name); - } - - return gGetBranchNameLength(vol, namelen); -} - -// -// returns length of name -// of either dataset or subgroup -// called from: H5Gget_info, then H5Gget_objname_by_idx -// (which calls H5Lget_name.. ) -// -size_t gGetNameOfNthItem(H5VL_ObjDef_t *vol, uint32_t idx, char *name) -{ - gLoadContent(vol); - - /* - if (idx < vol->m_NumAttrs) - return gGetNameOfNthAttr(vol, idx, name); - - uint32_t vIdx = idx - vol->m_NumAttrs; - if (vIdx < vol->m_NumVars) - */ - if (idx < vol->m_NumVars) - { - adios2_variable *curr = (vol->m_Vars)[idx]; - - size_t namelen; - adios2_variable_name(NULL, &namelen, curr); - - if ((NULL != name) && (NULL == vol->m_Path)) - adios2_variable_name(name, &namelen, curr); - else if (NULL != name) - { - char fullPath[namelen + 1]; - adios2_variable_name(fullPath, &namelen, curr); - fullPath[namelen] = '\0'; - - gGetBranchName(vol, fullPath, name); - // printf(".... [%s] vs [%s]\n", fullPath, name); - } - return gGetBranchNameLength(vol, namelen); - } - - // now try subgroups - if (0 == vol->m_NumSubGroups) - return 0; - - uint32_t vIdx = idx - vol->m_NumVars; - if (vIdx >= vol->m_NumSubGroups) - return 0; - - char *n = vol->m_SubGroupNames[vIdx]; - if (NULL != name) - { - sprintf(name, "%s", n); - } - return strlen(n); -} - -// -// load attributes and vars that belongs to this obj -// -void gLoadContent(H5VL_ObjDef_t *obj) -{ - if (0 < (obj->m_NumVars + obj->m_NumAttrs)) - return; - - size_t nvars, nattrs; - { - if ((ROOT == obj->m_ObjType) || (GROUP == obj->m_ObjType)) - { - adios2_variable **adios_vars; - adios2_inquire_group_variables(&adios_vars, obj->m_Path, &nvars, - obj->m_FileIO); - - obj->m_NumVars = nvars; - if (nvars > 0) - obj->m_Vars = adios_vars; - } - } - - { - if (ATTR != obj->m_ObjType) - { - adios2_attribute **adios_attrs; - adios2_inquire_group_attributes(&adios_attrs, obj->m_Path, &nattrs, - obj->m_FileIO); - - obj->m_NumAttrs = nattrs; - if (nattrs > 0) - obj->m_Attrs = adios_attrs; - } - } -} - -// -// -void gLoadSubGroups(H5VL_ObjDef_t *obj) -{ - // NOTE: subgroups will be supported when ADIOS supports hierarchy properly - if ((ROOT == obj->m_ObjType) || (GROUP == obj->m_ObjType)) - { - if (obj->m_NumSubGroups > 0) - return; - - adios2_inquire_subgroups(&(obj->m_SubGroupNames), obj->m_Path, - &(obj->m_NumSubGroups), obj->m_FileIO); - return; - } -} - -void gChooseEngine(adios2_io *io) -{ - const char *engineType = getenv("ADIOS2_ENGINE"); - - if (engineType != NULL) - { - if (0 == m_MPIRank) - printf(" ADIOS2 will apply engine: %s\n", engineType); - adios2_set_engine(io, engineType); - } - else - { - adios2_set_engine(io, "BP4"); - } -} - -H5VL_FileDef_t *gADIOS2CreateFile(const char *name) -{ - H5VL_FileDef_t *handle = NULL; - handle = (H5VL_FileDef_t *)SAFE_CALLOC(1, sizeof(H5VL_FileDef_t)); - - // if (0 == m_MPIRank) - // printf("===========> creating: file:%s\n", name); - - handle->m_IO = adios2_declare_io(m_ADIOS2, name); - - if (NULL == handle->m_IO) - handle->m_IO = adios2_at_io(m_ADIOS2, name); - - if (NULL == handle->m_IO) - { - SAFE_FREE(handle); - return NULL; - } - - adios2_set_parameter(handle->m_IO, "Profile", "Off"); - gChooseEngine(handle->m_IO); - handle->m_Engine = adios2_open(handle->m_IO, name, adios2_mode_write); - - return handle; -} - -H5VL_FileDef_t *gADIOS2OpenFile(const char *name) -{ - H5VL_FileDef_t *handle = NULL; - handle = (H5VL_FileDef_t *)SAFE_CALLOC(1, sizeof(H5VL_FileDef_t)); - - // printf("===========> opening: file:%s\n", name); - - handle->m_IO = adios2_declare_io(m_ADIOS2, name); - - gChooseEngine(handle->m_IO); - handle->m_Engine = adios2_open(handle->m_IO, name, adios2_mode_read); - - char engineType[10]; - size_t engineTypeSize; - adios2_engine_get_type(engineType, &engineTypeSize, handle->m_Engine); - printf("==> engine type:%s", engineType); - if ((engineType[0] == 'B') && (engineType[2] == '5')) - { // BP5's IO is empty until beginStep is called. - // since there is no concept for steps in HDF5, sufficient to call - // begin/end steps here once. - H5VL_adios2_begin_read_step(name); - H5VL_adios2_endstep(name); - } - return handle; -} - -void gADIOS2CloseFile(H5VL_FileDef_t *handle) -{ - if (NULL == handle) - return; - - if (NULL != handle->m_Engine) - adios2_close(handle->m_Engine); - - SAFE_FREE(handle); -} - -adios2_variable *gADIOS2InqVar(adios2_io *io, const char *name) -{ - return adios2_inquire_variable(io, name); -} - -herr_t gADIOS2ReadVar(H5VL_VarDef_t *varDef) -{ - REQUIRE_NOT_NULL_ERR(varDef, -1); - REQUIRE_NOT_NULL_ERR(varDef->m_Variable, -1); - - int varDim = varDef->m_DimCount; - if (varDim < 0) - return -1; - - if (varDim > 0) - { - size_t start[varDim], count[varDim]; - if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, - start, count, varDim)) - return -1; - - adios2_set_selection(varDef->m_Variable, varDef->m_DimCount, start, - count); - - if (varDef->m_MemSpaceID > 0) - { - RANK_ZERO_MSG( - "\n## No memory space is supported for reading in ADIOS...\n"); - } - } - adios2_get(varDef->m_Engine, varDef->m_Variable, varDef->m_Data, - adios2_mode_sync); - - return 0; -} - -adios2_variable *gADIOS2DefineVar(adios2_io *io, H5VL_VarDef_t *varDef) -{ - adios2_variable *variable = adios2_inquire_variable(io, varDef->m_Name); - if (NULL == variable) - { - adios2_type varType = gUtilADIOS2Type(varDef->m_TypeID); - - size_t varDim = 1; // gUtilGetSpaceInfo(; - - varDim = gUtilADIOS2GetDim(varDef->m_ShapeID); - - if (0 == varDim) - { // scalar - variable = adios2_define_variable(io, varDef->m_Name, varType, - varDim, NULL, NULL, NULL, - adios2_constant_dims_true); - } - else - { - varDef->m_DimCount = varDim; - - size_t shape[varDim]; - gUtilADIOS2GetShape(varDef->m_ShapeID, shape, varDim); - - variable = adios2_define_variable(io, varDef->m_Name, varType, - varDim, shape, NULL, NULL, - adios2_constant_dims_false); - } - } - - return variable; -} - -adios2_variable *gADIOS2CreateVar(adios2_io *io, H5VL_VarDef_t *varDef) -{ - REQUIRE_NOT_NULL_ERR(varDef, NULL); - - adios2_variable *variable = adios2_inquire_variable(io, varDef->m_Name); - size_t varDim = 1; - - if (NULL == variable) - { - adios2_type varType = gUtilADIOS2Type(varDef->m_TypeID); - if (adios2_type_unknown == varType) - { - SHOW_ERROR_MSG( - "... ERROR! Unsupported type. Cannot identify var type. %s\n", - varDef->m_Name); - return NULL; - } - - varDim = gUtilADIOS2GetDim(varDef->m_ShapeID); - - if (0 == varDim) - { // scalar - variable = adios2_define_variable(io, varDef->m_Name, varType, - varDim, NULL, NULL, NULL, - adios2_constant_dims_true); - } - else - { - varDef->m_DimCount = varDim; - - size_t shape[varDim]; - gUtilADIOS2GetShape(varDef->m_ShapeID, shape, varDim); - - size_t start[varDim], count[varDim]; - if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, - start, count, varDim)) - return NULL; - - variable = adios2_define_variable(io, varDef->m_Name, varType, - varDim, shape, start, count, - adios2_constant_dims_true); - } - } - - if (NULL != varDef->m_Data) - { - varDim = gUtilADIOS2GetDim(varDef->m_ShapeID); - if (varDim > 0) - { - size_t start[varDim], count[varDim]; - if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, - start, count, varDim)) - return NULL; - adios2_set_selection(variable, varDim, start, count); - - if ((varDef->m_MemSpaceID > 0) && - (varDef->m_MemSpaceID != varDef->m_ShapeID)) - { - RANK_ZERO_MSG( - "\n## No support of memory space for writing in ADIOS.\n"); - } - } - adios2_put(varDef->m_Engine, variable, varDef->m_Data, - adios2_mode_sync); - } - - return variable; -} - -adios2_attribute *gADIOS2CreateAttr(adios2_io *io, H5VL_AttrDef_t *input, - const char *fullPath) -{ - adios2_type attrType = gUtilADIOS2Type(input->m_TypeID); - - if (adios2_type_unknown == attrType) - { - SHOW_ERROR_MSG("... ERROR Unsupported type. Cannot create attr %s\n", - fullPath); - return NULL; - } - - size_t attrDim = 0; - - if (NULL != adios2_inquire_attribute(io, fullPath)) - { - /* - printf("... adios2 attribute %s is already created.\n", fullPath); - return NULL; - */ - gADIOS2RemoveAttr(io, fullPath); - } - - if (gUtilADIOS2IsScalar(input->m_SpaceID)) - { - return adios2_define_attribute(io, fullPath, attrType, input->m_Data); - } - else - { - attrDim = gUtilADIOS2GetDim(input->m_SpaceID); - - if (1 != attrDim) - { - printf("Unable to support 2+D arrays in ADIOS2 attributes. Use " - "Vars instead."); - return NULL; - } - - size_t shape[attrDim]; - gUtilADIOS2GetShape(input->m_SpaceID, shape, attrDim); - - if (adios2_type_string == attrType) - { - size_t strSize = H5Tget_size(input->m_TypeID); - htri_t isVariableSize = H5Tis_variable_str(input->m_TypeID); - /*printf("attr: %s is string array, is variable str? %d, " - "H5Tget_size=%lu\n", - input->m_Name, isVariableSize, strSize); - */ - if (isVariableSize) - return adios2_define_attribute_array(io, fullPath, attrType, - (input->m_Data), shape[0]); - else - { - int i; - - char *arrayOfStr[shape[0]]; - for (i = 0; i < shape[0]; i++) - { - arrayOfStr[i] = malloc(sizeof(char) * strSize + 1); - strncpy(arrayOfStr[i], - (char *)(input->m_Data) + strSize * i, strSize); - arrayOfStr[i][strSize] = '\0'; - - // printf(".... output attr: %d, [%s]", i, arrayOfStr[i]); - } - adios2_attribute *result = adios2_define_attribute_array( - io, fullPath, attrType, arrayOfStr, shape[0]); - for (i = 0; i < shape[0]; i++) - free(arrayOfStr[i]); - return result; - } - } - else - // return adios2_define_attribute_array(io, fullPath, attrType, - // &(input->m_Data), shape[0]); - return adios2_define_attribute_array(io, fullPath, attrType, - (input->m_Data), shape[0]); - } -} - -adios2_attribute *gADIOS2InqAttr(adios2_io *io, const char *name) -{ - return adios2_inquire_attribute(io, name); -} - -bool gADIOS2RemoveAttr(adios2_io *io, const char *name) -{ - adios2_bool result; - adios2_remove_attribute(&result, io, name); - return (adios2_true == result); -} - -hid_t H5VL_adios_register(void) -{ - if (H5I_VOL != H5Iget_type(H5VL_ADIOS_g)) - { - - H5VL_ADIOS_g = H5VLregister_connector(&H5VL_adios2_def, H5P_DEFAULT); - if (H5VL_ADIOS_g <= 0) - { - SHOW_ERROR_MSG( - " [ECP ADIOS VOL ERROR] with H5VLregister_connector\n"); - return -1; - } - } - - return H5VL_ADIOS_g; -} - -/* - */ -herr_t H5P_unset_adios() { return H5VLunregister_connector(H5VL_ADIOS_g); } +#include "H5VLpublic.h" +#include "hdf5.h" +#define H5S_FRIEND // suppress error for H5Spkg +#define H5O_FRIEND // suppress error for H5Opkg + +#include +#include +#include +#include + +#if ADIOS2_USE_MPI +#include +#endif + +#include "H5Epublic.h" +#include "H5VolReadWrite.h" + +#include "H5VolUtil.h" + +#ifdef HAVE_UNISTD_H +#include // sleep +#elif defined HAVE_WINDOWS_H +#include +#define sleep(x) Sleep(1000 * (x)) +#endif + +// these are in h5private.h +#define SUCCEED 1 +#define FAIL 0 + +static hid_t H5VL_ADIOS_g = -1; + +static adios2_adios *m_ADIOS2 = NULL; +// static adios2_io *m_IO = NULL; +static int m_MPIRank = 0; + +#define RANK_ZERO_MSG(...) \ + { \ + if (0 == m_MPIRank) \ + { \ + fprintf(stderr, "## VOL info:"); \ + fprintf(stderr, __VA_ARGS__); \ + fflush(stderr); \ + } \ + } + +void gGenerateFullPath(char *fullPath, const char *parentPath, const char *name) +{ + size_t ps = strlen(parentPath); + size_t ns = strlen(name); + size_t length = ps; + bool startsWithDotSlash = + ((ns > 1) && ('/' == name[1]) && ('.' == name[0])); + + if ('/' == parentPath[ps - 1]) + { + if (startsWithDotSlash) + { + sprintf(fullPath, "%s%s", parentPath, name + 2); + length += ns - 2; + } + else + { + sprintf(fullPath, "%s%s", parentPath, name); + length += ns; + } + } + else + { + if (startsWithDotSlash) + { + sprintf(fullPath, "%s/%s", parentPath, name + 2); + length += 1 + ns - 2; + } + else + { + sprintf(fullPath, "%s/%s", parentPath, name); + length += 1 + ns; + } + } + fullPath[length] = '\0'; +} + +herr_t H5VL_adios2_begin_read_step(const char *filename) +{ + return H5VL_adios2_beginstep(filename, adios2_step_mode_read); +} + +herr_t H5VL_adios2_begin_write_step(const char *filename) +{ + return H5VL_adios2_beginstep(filename, adios2_step_mode_append); +} + +herr_t H5VL_adios2_beginstep(const char *filename, adios2_step_mode m) +{ + adios2_io *m_IO = adios2_at_io(m_ADIOS2, filename); + adios2_engine *currEngine = adios2_get_engine(m_IO, filename); + if (NULL == currEngine) + return -1; + + adios2_step_status status; + adios2_begin_step(currEngine, m, 0.0, &status); + + if (adios2_step_status_end_of_stream == status) + { + RANK_ZERO_MSG("..end_of_stream \n"); + return -1; + } + else if (adios2_step_status_not_ready == status) + { + RANK_ZERO_MSG(".. not ready \n"); + while (adios2_step_status_not_ready == status) + { + sleep(1); + adios2_begin_step(currEngine, m, 0.0, &status); + } + RANK_ZERO_MSG("... other status \n"); + if (adios2_step_status_ok == status) + { + return 0; + } + return -1; + } + else if (adios2_step_status_ok == status) + { + RANK_ZERO_MSG(".. stream ready \n"); + return 0; + } + return -1; +} + +herr_t H5VL_adios2_endstep(const char *filename) +{ + adios2_io *m_IO = adios2_at_io(m_ADIOS2, filename); + adios2_engine *engine = adios2_get_engine(m_IO, filename); + if (NULL == engine) + return -1; + + adios2_end_step(engine); + return 0; +} + +void gInitADIOS2(hid_t acc_tpl) +{ + if (NULL != m_ADIOS2) + return; + +#if ADIOS2_USE_MPI + int flag = 0; + MPI_Initialized(&flag); + if (!flag) + { + RANK_ZERO_MSG("H5VL_ADIOS2 WARNING: MPI is not initialized, will use " + "Serial ADIOS\n"); + m_ADIOS2 = adios2_init_serial(); + } + else + { + MPI_Comm comm = MPI_COMM_WORLD; + if (H5Pget_driver(acc_tpl) == H5FD_MPIO) + { + MPI_Info info; + H5Pget_fapl_mpio(acc_tpl, &comm, &info); + // int rank; + } + MPI_Comm_rank(comm, &m_MPIRank); + m_ADIOS2 = adios2_init_mpi(comm); + } +#else + m_ADIOS2 = adios2_init_serial(); +#endif + REQUIRE_NOT_NULL(m_ADIOS2); +} + +void gExitADIOS2() +{ + if (NULL == m_ADIOS2) + return; + adios2_remove_all_ios(m_ADIOS2); + adios2_finalize(m_ADIOS2); + m_ADIOS2 = NULL; +} + +void loadPath(H5VL_ObjDef_t *result, const char *name, H5VL_ObjDef_t *parent) +{ + if (NULL == parent->m_Path) + { + result->m_Path = (char *)(SAFE_CALLOC(strlen(name) + 1, sizeof(char))); + strcpy(result->m_Path, name); + result->m_Path[strlen(name)] = '\0'; + } + else if ((strlen(parent->m_Path) == 1) && (parent->m_Path[0] == '/')) + { + result->m_Path = (char *)(SAFE_CALLOC(strlen(name) + 2, sizeof(char))); + sprintf(result->m_Path, "%s%s", parent->m_Path, name); + result->m_Path[strlen(name) + 1] = '\0'; + } + else + { + size_t size = strlen(name) + strlen(parent->m_Path) + 1; + if (parent->m_Path[strlen(parent->m_Path) - 1] == '/') + { + size = size - 1; + result->m_Path = (char *)(SAFE_CALLOC(size + 1, sizeof(char))); + sprintf(result->m_Path, "%s%s", parent->m_Path, name); + } + else + { + result->m_Path = (char *)(SAFE_CALLOC(size + 1, sizeof(char))); + sprintf(result->m_Path, "%s/%s", parent->m_Path, name); + } + // result->m_Path= + // (char*)(SAFE_CALLOC(strlen(name)+4+strlen(parent->m_Path), + // sizeof(char))); + result->m_Path[size] = '\0'; + } +} + +H5VL_ObjDef_t *initVolObj(H5VL_ObjDef_t *parent) +{ + H5VL_ObjDef_t *result = + (H5VL_ObjDef_t *)SAFE_CALLOC(1, sizeof(H5VL_ObjDef_t)); + result->m_Parent = parent; + + result->m_ObjPtr = NULL; + result->m_Path = NULL; + result->m_SubGroupNames = NULL; + + result->m_NumAttrs = 0; + result->m_NumVars = 0; + result->m_NumSubGroups = 0; + + result->m_Vars = NULL; + result->m_Attrs = NULL; + + if (NULL == parent) + result->m_FileIO = NULL; + else + result->m_FileIO = parent->m_FileIO; + + return result; +} + +void gFreeVol(H5VL_ObjDef_t *vol) +{ + if (NULL == vol) + return; + + if (NULL != vol->m_Vars) + { + SAFE_FREE(vol->m_Vars); + } + + if (NULL != vol->m_Attrs) + { + SAFE_FREE(vol->m_Attrs); + } + + if (NULL != vol->m_SubGroupNames) + { + int i; + for (i = 0; i < vol->m_NumSubGroups; i++) + SAFE_FREE(vol->m_SubGroupNames[i]); + + SAFE_FREE(vol->m_SubGroupNames); + } + + SAFE_FREE(vol->m_Path); + SAFE_FREE(vol); + vol = NULL; +} + +void *gAttrToVolObj(H5VL_AttrDef_t *attr, H5VL_ObjDef_t *parent) +{ + H5VL_ObjDef_t *result = initVolObj(parent); + + result->m_ObjType = ATTR; + result->m_ObjPtr = attr; + + loadPath(result, attr->m_Name, parent); + return result; +} + +void *gGroupToVolObj(H5VL_GroupDef_t *group, H5VL_ObjDef_t *parent) +{ + H5VL_ObjDef_t *result = initVolObj(parent); + result->m_ObjType = GROUP; + result->m_ObjPtr = group; + + loadPath(result, group->m_Name, parent); + + return result; +} + +void *gVarToVolObj(H5VL_VarDef_t *var, H5VL_ObjDef_t *parent) +{ + H5VL_ObjDef_t *result = initVolObj(parent); + result->m_ObjType = VAR; + result->m_ObjPtr = var; + + loadPath(result, var->m_Name, parent); + return result; +} + +void *gFileToVolObj(H5VL_FileDef_t *f) +{ + H5VL_ObjDef_t *result = initVolObj(NULL); + result->m_ObjType = ROOT; + result->m_ObjPtr = f; + + result->m_FileIO = f->m_IO; + return result; +} + +adios2_attribute *gLocateAttrFrom(H5VL_ObjDef_t *owner, const char *attrName) +{ + if (NULL == owner) + return NULL; + + if (ROOT == owner->m_ObjType) + return adios2_inquire_attribute(owner->m_FileIO, attrName); + + if ((GROUP == owner->m_ObjType) || (VAR == owner->m_ObjType)) + { + size_t ss = strlen(owner->m_Path); + if ('/' == (owner->m_Path)[ss - 1]) + { + char fullPath[strlen(owner->m_Path) + 4 + strlen(attrName)]; + sprintf(fullPath, "%s%s", owner->m_Path, attrName); + return adios2_inquire_attribute(owner->m_FileIO, fullPath); + } + else + { + char fullPath[strlen(owner->m_Path) + 4 + strlen(attrName)]; + sprintf(fullPath, "%s/%s", owner->m_Path, attrName); + return adios2_inquire_attribute(owner->m_FileIO, fullPath); + } + } + return NULL; +} + +// +// returns 0 is obj_name is not under owner +// returns 1 is obj_name is under owner +// +htri_t gExistsUnderGrp(H5VL_ObjDef_t *owner, const char *obj_name) +{ + if (NULL == owner) + return 0; + + if (ROOT == owner->m_ObjType) + { + if (NULL != adios2_inquire_attribute(owner->m_FileIO, obj_name)) + return 1; + if (NULL != adios2_inquire_variable(owner->m_FileIO, obj_name)) + return 1; + return 0; + } + + if (GROUP != owner->m_ObjType) + return 0; + + char fullPath[strlen(owner->m_Path) + 4 + strlen(obj_name)]; + sprintf(fullPath, "%s/%s", owner->m_Path, obj_name); + + if (NULL != adios2_inquire_attribute(owner->m_FileIO, fullPath)) + return 1; + + if (NULL != adios2_inquire_variable(owner->m_FileIO, fullPath)) + return 1; + + return 0; +} + +// +// return: +// if obj_name is found and deleted. +// otherwise +// +bool gRemoveUnderGrp(H5VL_ObjDef_t *owner, const char *obj_name) +{ + if (NULL == owner) + return 0; + + adios2_bool result; + + if (ROOT == owner->m_ObjType) + { + if (adios2_error_none == + adios2_remove_attribute(&result, owner->m_FileIO, obj_name)) + if (adios2_true == result) + return true; + if (adios2_error_none == + adios2_remove_variable(&result, owner->m_FileIO, obj_name)) + if (adios2_true == result) + return true; + return false; + } + + if (GROUP != owner->m_ObjType) + return false; + + char fullPath[strlen(owner->m_Path) + 4 + strlen(obj_name)]; + gGenerateFullPath(fullPath, owner->m_Path, obj_name); + // sprintf(fullPath, "%s/%s", owner->m_Path, obj_name); + + if (adios2_error_none == + adios2_remove_attribute(&result, owner->m_FileIO, fullPath)) + if (adios2_true == result) + return true; + if (adios2_error_none == + adios2_remove_variable(&result, owner->m_FileIO, fullPath)) + if (adios2_true == result) + return true; + +#ifdef NEVER + return false; +#else + printf("\n......... NOTE: unable to remove GROUP %s \n\n", fullPath); + return true; +#endif +} + +void gLoadAttrDef(H5VL_AttrDef_t *attrDef) +{ + adios2_attribute *attr = attrDef->m_Attribute; + if (NULL == attr) + return; + + adios2_bool boolVal; + adios2_attribute_is_value(&boolVal, attr); + if (adios2_true == boolVal) + { + attrDef->m_SpaceID = H5Screate(H5S_SCALAR); + attrDef->m_Size = 1; + } + else + { + attrDef->m_IsScalar = false; + adios2_attribute_size(&(attrDef->m_Size), attr); + attrDef->m_SpaceID = H5Screate(H5S_SIMPLE); + // NOTE: adios only supports 1 dimension + hsize_t ss = (hsize_t)(attrDef->m_Size); + H5Sset_extent_simple(attrDef->m_SpaceID, 1, &ss, NULL); + } + + adios2_type adiosType; + adios2_attribute_type(&adiosType, attr); + attrDef->m_TypeID = gUtilHDF5Type(adiosType); + + /* + if (adios2_type_string == adiosType) { + char typeNameStr[30]; + size_t typeNameSize; + adios2_attribute_type_string (typeNameStr, &typeNameSize, attr); + // need a way to get actual string value size, not type sie + //printf(" string type= %s, name=%s, size= %lu\n", attrDef->m_Name, + typeNameStr, typeNameSize); + } + */ +} + +H5VL_ObjDef_t *gGetVarObjDef(const char *name, H5VL_ObjDef_t *vol) +{ + if (vol->m_ObjType == ROOT) + { // no vol->m_Path + if ((strlen(name) == 1) && (name[0] == '/')) + { + // root group, not var + return NULL; + } + H5VL_FileDef_t *handle = (H5VL_FileDef_t *)(vol->m_ObjPtr); + adios2_variable *var = gADIOS2InqVar(vol->m_FileIO, name); + if (NULL == var) + { + if (name[strlen(name) - 1] != '/') + { + SHOW_ERROR_MSG( + "H5VL_ADIOS2: Error: No such variable: %s in file\n ", + name); + return NULL; + } + + char *n = (char *)(SAFE_CALLOC(strlen(name) + 1, sizeof(char))); + strcpy(n, name); + n[strlen(name) - 1] = '\0'; + var = gADIOS2InqVar(vol->m_FileIO, n); + SAFE_FREE(n); + if (NULL == var) + { + return NULL; + } + } + H5VL_VarDef_t *varDef = + gCreateVarDef(name, handle->m_Engine, var, -1, -1); + return gVarToVolObj(varDef, vol); + } + + char fullPath[strlen(vol->m_Path) + 4 + strlen(name)]; + gGenerateFullPath(fullPath, vol->m_Path, name); + + if ('/' == name[strlen(name) - 1]) + { + fullPath[strlen(fullPath) - 1] = '\0'; + } + + adios2_variable *var = gADIOS2InqVar(vol->m_FileIO, fullPath); + if (NULL == var) + { + SHOW_ERROR_MSG("H5VL_ADIOS2: Error: No such variable:: %s in file\n ", + fullPath); + return NULL; + } + + H5VL_ObjDef_t *curr = vol; + while (curr) + { + if (curr->m_Parent == NULL) + { + H5VL_VarDef_t *varDef = gCreateVarDef( + fullPath, ((H5VL_FileDef_t *)(curr->m_ObjPtr))->m_Engine, var, + -1, -1); + + return gVarToVolObj(varDef, vol); + } + else + { + curr = curr->m_Parent; + } + } + + return NULL; +} + +H5VL_AttrDef_t *gCreateAttrDef(const char *name, hid_t type_id, hid_t space_id) +{ + H5VL_AttrDef_t *attrDef = + (H5VL_AttrDef_t *)SAFE_CALLOC(1, sizeof(H5VL_AttrDef_t)); + attrDef->m_Attribute = NULL; + attrDef->m_Size = 0; + + attrDef->m_Name = (char *)SAFE_CALLOC(strlen(name) + 1, sizeof(char)); + sprintf(attrDef->m_Name, "%s", name); + attrDef->m_Name[strlen(name)] = '\0'; + + attrDef->m_TypeID = type_id; + + attrDef->m_IsScalar = true; + + if (space_id != -1) // most likely from H5Dcreate + attrDef->m_SpaceID = H5Scopy(space_id); + else + attrDef->m_SpaceID = -1; + + return attrDef; +} + +H5VL_VarDef_t *gCreateVarDef(const char *name, adios2_engine *engine, + adios2_variable *var, hid_t space_id, + hid_t type_id) +{ + if ((-1 == type_id) && (NULL == var)) + { + printf("UNABLE to create var with unknown var _and_ unknown type"); + return NULL; + } + H5VL_VarDef_t *varDef = + (H5VL_VarDef_t *)SAFE_CALLOC(1, sizeof(H5VL_VarDef_t)); + varDef->m_Name = (char *)SAFE_CALLOC(strlen(name) + 1, sizeof(char)); + sprintf(varDef->m_Name, "%s", name); + + varDef->m_Engine = engine; + varDef->m_Variable = var; + varDef->m_DimCount = (size_t)-1; // default: unknown + varDef->m_TypeID = -1; // default: unknown + varDef->m_Data = NULL; + + if (space_id != -1) // most likely from H5Dcreate + { + varDef->m_ShapeID = H5Scopy(space_id); + varDef->m_DimCount = H5Sget_simple_extent_ndims(space_id); + } + else + { // likely from H5Dopen, so get space info from adios var: + REQUIRE_NOT_NULL_ERR(var, NULL); + size_t nDims; + if (adios2_error_none != adios2_variable_ndims(&nDims, var)) + { + SAFE_FREE(varDef); + return NULL; + } + + varDef->m_DimCount = nDims; + + size_t shape[nDims]; + if (adios2_error_none != adios2_variable_shape(shape, var)) + { + SAFE_FREE(varDef); + return NULL; + } + + hid_t filespace = H5Screate_simple(nDims, (hsize_t *)shape, NULL); + varDef->m_ShapeID = filespace; + } + + if (type_id != -1) + varDef->m_TypeID = type_id; + else + { + adios2_type adiosType; + adios2_variable_type(&adiosType, var); + varDef->m_TypeID = gUtilHDF5Type(adiosType); + + /* + if (adios2_type_string == adiosType) { + char typeNameStr[30]; + size_t typeNameSize; + adios2_variable_type_string (typeNameStr, &typeNameSize, var); + printf(" var type= %s\n", typeNameStr); + } + */ + } + + return varDef; +} + +H5VL_GroupDef_t *gCreateGroupDef(const char *name) +{ + H5VL_GroupDef_t *grp = + (H5VL_GroupDef_t *)SAFE_CALLOC(1, sizeof(H5VL_GroupDef_t)); + + grp->m_Name = (char *)SAFE_CALLOC(strlen(name) + 1, sizeof(char)); + sprintf(grp->m_Name, "%s", name); + + return grp; +} + +size_t gGetBranchNameLength(H5VL_ObjDef_t *vol, size_t namelen) +{ + if (vol->m_Path != NULL) + if ('/' == (vol->m_Path)[strlen(vol->m_Path) - 1]) + return namelen - strlen(vol->m_Path); // minus parent path + else + return namelen - strlen(vol->m_Path) - + 1; // minus parent path & seperator + else + return namelen; +} + +void gGetBranchName(H5VL_ObjDef_t *vol, const char *fullPath, char *name) +{ + size_t namelen = strlen(fullPath); + + if ('/' == (vol->m_Path)[strlen(vol->m_Path) - 1]) + // minus parent path & seperator + strncpy(name, fullPath + strlen(vol->m_Path), + namelen - strlen(vol->m_Path)); + else + strncpy(name, fullPath + strlen(vol->m_Path) + 1, + namelen - strlen(vol->m_Path) - 1); +} + +// +// returns length of name +// +size_t gGetNameOfNthAttr(H5VL_ObjDef_t *vol, uint32_t idx, char *name) +{ + gLoadContent(vol); + if (0 == vol->m_NumAttrs) + return 0; + + if (idx >= vol->m_NumAttrs) + return 0; + + adios2_attribute *curr = (vol->m_Attrs)[idx]; + + size_t namelen; + adios2_attribute_name(NULL, &namelen, curr); + + if ((NULL != name) && (NULL == vol->m_Path)) + adios2_attribute_name(name, &namelen, curr); + else if (NULL != name) + { + char fullPath[namelen + 1]; + adios2_attribute_name(fullPath, &namelen, curr); + fullPath[namelen] = '\0'; + + gGetBranchName(vol, fullPath, name); + // printf(".... [%s] vs [%s]\n", fullPath, name); + } + + return gGetBranchNameLength(vol, namelen); +} + +// +// returns length of name +// of either dataset or subgroup +// called from: H5Gget_info, then H5Gget_objname_by_idx +// (which calls H5Lget_name.. ) +// +size_t gGetNameOfNthItem(H5VL_ObjDef_t *vol, uint32_t idx, char *name) +{ + gLoadContent(vol); + + /* + if (idx < vol->m_NumAttrs) + return gGetNameOfNthAttr(vol, idx, name); + + uint32_t vIdx = idx - vol->m_NumAttrs; + if (vIdx < vol->m_NumVars) + */ + if (idx < vol->m_NumVars) + { + adios2_variable *curr = (vol->m_Vars)[idx]; + + size_t namelen; + adios2_variable_name(NULL, &namelen, curr); + + if ((NULL != name) && (NULL == vol->m_Path)) + adios2_variable_name(name, &namelen, curr); + else if (NULL != name) + { + char fullPath[namelen + 1]; + adios2_variable_name(fullPath, &namelen, curr); + fullPath[namelen] = '\0'; + + gGetBranchName(vol, fullPath, name); + // printf(".... [%s] vs [%s]\n", fullPath, name); + } + return gGetBranchNameLength(vol, namelen); + } + + // now try subgroups + if (0 == vol->m_NumSubGroups) + return 0; + + uint32_t vIdx = idx - vol->m_NumVars; + if (vIdx >= vol->m_NumSubGroups) + return 0; + + char *n = vol->m_SubGroupNames[vIdx]; + if (NULL != name) + { + sprintf(name, "%s", n); + } + return strlen(n); +} + +// +// load attributes and vars that belongs to this obj +// +void gLoadContent(H5VL_ObjDef_t *obj) +{ + if (0 < (obj->m_NumVars + obj->m_NumAttrs)) + return; + + size_t nvars, nattrs; + { + if ((ROOT == obj->m_ObjType) || (GROUP == obj->m_ObjType)) + { + adios2_variable **adios_vars; + adios2_inquire_group_variables(&adios_vars, obj->m_Path, &nvars, + obj->m_FileIO); + + obj->m_NumVars = nvars; + if (nvars > 0) + obj->m_Vars = adios_vars; + } + } + + { + if (ATTR != obj->m_ObjType) + { + adios2_attribute **adios_attrs; + adios2_inquire_group_attributes(&adios_attrs, obj->m_Path, &nattrs, + obj->m_FileIO); + + obj->m_NumAttrs = nattrs; + if (nattrs > 0) + obj->m_Attrs = adios_attrs; + } + } +} + +// +// +void gLoadSubGroups(H5VL_ObjDef_t *obj) +{ + // NOTE: subgroups will be supported when ADIOS supports hierarchy properly + if ((ROOT == obj->m_ObjType) || (GROUP == obj->m_ObjType)) + { + if (obj->m_NumSubGroups > 0) + return; + + adios2_inquire_subgroups(&(obj->m_SubGroupNames), obj->m_Path, + &(obj->m_NumSubGroups), obj->m_FileIO); + return; + } +} + +void gChooseEngine(adios2_io *io) +{ + const char *engineType = getenv("ADIOS2_ENGINE"); + + if (engineType != NULL) + { + if (0 == m_MPIRank) + printf(" ADIOS2 will apply engine: %s\n", engineType); + adios2_set_engine(io, engineType); + } + else + { + adios2_set_engine(io, "BP4"); + } +} + +H5VL_FileDef_t *gADIOS2CreateFile(const char *name) +{ + H5VL_FileDef_t *handle = NULL; + handle = (H5VL_FileDef_t *)SAFE_CALLOC(1, sizeof(H5VL_FileDef_t)); + + // if (0 == m_MPIRank) + // printf("===========> creating: file:%s\n", name); + + handle->m_IO = adios2_declare_io(m_ADIOS2, name); + + if (NULL == handle->m_IO) + handle->m_IO = adios2_at_io(m_ADIOS2, name); + + if (NULL == handle->m_IO) + { + SAFE_FREE(handle); + return NULL; + } + + adios2_set_parameter(handle->m_IO, "Profile", "Off"); + gChooseEngine(handle->m_IO); + handle->m_Engine = adios2_open(handle->m_IO, name, adios2_mode_write); + + return handle; +} + +H5VL_FileDef_t *gADIOS2OpenFile(const char *name) +{ + H5VL_FileDef_t *handle = NULL; + handle = (H5VL_FileDef_t *)SAFE_CALLOC(1, sizeof(H5VL_FileDef_t)); + + // printf("===========> opening: file:%s\n", name); + + handle->m_IO = adios2_declare_io(m_ADIOS2, name); + + gChooseEngine(handle->m_IO); + handle->m_Engine = adios2_open(handle->m_IO, name, adios2_mode_read); + + char engineType[10]; + size_t engineTypeSize; + adios2_engine_get_type(engineType, &engineTypeSize, handle->m_Engine); + printf("==> engine type:%s", engineType); + if ((engineType[0] == 'B') && (engineType[2] == '5')) + { // BP5's IO is empty until beginStep is called. + // since there is no concept for steps in HDF5, sufficient to call + // begin/end steps here once. + H5VL_adios2_begin_read_step(name); + H5VL_adios2_endstep(name); + } + return handle; +} + +void gADIOS2CloseFile(H5VL_FileDef_t *handle) +{ + if (NULL == handle) + return; + + if (NULL != handle->m_Engine) + adios2_close(handle->m_Engine); + + SAFE_FREE(handle); +} + +adios2_variable *gADIOS2InqVar(adios2_io *io, const char *name) +{ + return adios2_inquire_variable(io, name); +} + +herr_t gADIOS2ReadVar(H5VL_VarDef_t *varDef) +{ + REQUIRE_NOT_NULL_ERR(varDef, -1); + REQUIRE_NOT_NULL_ERR(varDef->m_Variable, -1); + + int varDim = varDef->m_DimCount; + if (varDim < 0) + return -1; + + if (varDim > 0) + { + size_t start[varDim], count[varDim]; + if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, + start, count, varDim)) + return -1; + + adios2_set_selection(varDef->m_Variable, varDef->m_DimCount, start, + count); + + if (varDef->m_MemSpaceID > 0) + { + RANK_ZERO_MSG( + "\n## No memory space is supported for reading in ADIOS...\n"); + } + } + adios2_get(varDef->m_Engine, varDef->m_Variable, varDef->m_Data, + adios2_mode_sync); + + return 0; +} + +adios2_variable *gADIOS2DefineVar(adios2_io *io, H5VL_VarDef_t *varDef) +{ + adios2_variable *variable = adios2_inquire_variable(io, varDef->m_Name); + if (NULL == variable) + { + adios2_type varType = gUtilADIOS2Type(varDef->m_TypeID); + + size_t varDim = 1; // gUtilGetSpaceInfo(; + + varDim = gUtilADIOS2GetDim(varDef->m_ShapeID); + + if (0 == varDim) + { // scalar + variable = adios2_define_variable(io, varDef->m_Name, varType, + varDim, NULL, NULL, NULL, + adios2_constant_dims_true); + } + else + { + varDef->m_DimCount = varDim; + + size_t shape[varDim]; + gUtilADIOS2GetShape(varDef->m_ShapeID, shape, varDim); + + variable = adios2_define_variable(io, varDef->m_Name, varType, + varDim, shape, NULL, NULL, + adios2_constant_dims_false); + } + } + + return variable; +} + +adios2_variable *gADIOS2CreateVar(adios2_io *io, H5VL_VarDef_t *varDef) +{ + REQUIRE_NOT_NULL_ERR(varDef, NULL); + + adios2_variable *variable = adios2_inquire_variable(io, varDef->m_Name); + size_t varDim = 1; + + if (NULL == variable) + { + adios2_type varType = gUtilADIOS2Type(varDef->m_TypeID); + if (adios2_type_unknown == varType) + { + SHOW_ERROR_MSG( + "... ERROR! Unsupported type. Cannot identify var type. %s\n", + varDef->m_Name); + return NULL; + } + + varDim = gUtilADIOS2GetDim(varDef->m_ShapeID); + + if (0 == varDim) + { // scalar + variable = adios2_define_variable(io, varDef->m_Name, varType, + varDim, NULL, NULL, NULL, + adios2_constant_dims_true); + } + else + { + varDef->m_DimCount = varDim; + + size_t shape[varDim]; + gUtilADIOS2GetShape(varDef->m_ShapeID, shape, varDim); + + size_t start[varDim], count[varDim]; + if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, + start, count, varDim)) + return NULL; + + variable = adios2_define_variable(io, varDef->m_Name, varType, + varDim, shape, start, count, + adios2_constant_dims_true); + } + } + + if (NULL != varDef->m_Data) + { + varDim = gUtilADIOS2GetDim(varDef->m_ShapeID); + if (varDim > 0) + { + size_t start[varDim], count[varDim]; + if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, + start, count, varDim)) + return NULL; + adios2_set_selection(variable, varDim, start, count); + + if ((varDef->m_MemSpaceID > 0) && + (varDef->m_MemSpaceID != varDef->m_ShapeID)) + { + RANK_ZERO_MSG( + "\n## No support of memory space for writing in ADIOS.\n"); + } + } + adios2_put(varDef->m_Engine, variable, varDef->m_Data, + adios2_mode_sync); + } + + return variable; +} + +adios2_attribute *gADIOS2CreateAttr(adios2_io *io, H5VL_AttrDef_t *input, + const char *fullPath) +{ + adios2_type attrType = gUtilADIOS2Type(input->m_TypeID); + + if (adios2_type_unknown == attrType) + { + SHOW_ERROR_MSG("... ERROR Unsupported type. Cannot create attr %s\n", + fullPath); + return NULL; + } + + size_t attrDim = 0; + + if (NULL != adios2_inquire_attribute(io, fullPath)) + { + /* + printf("... adios2 attribute %s is already created.\n", fullPath); + return NULL; + */ + gADIOS2RemoveAttr(io, fullPath); + } + + if (gUtilADIOS2IsScalar(input->m_SpaceID)) + { + return adios2_define_attribute(io, fullPath, attrType, input->m_Data); + } + else + { + attrDim = gUtilADIOS2GetDim(input->m_SpaceID); + + if (1 != attrDim) + { + printf("Unable to support 2+D arrays in ADIOS2 attributes. Use " + "Vars instead."); + return NULL; + } + + size_t shape[attrDim]; + gUtilADIOS2GetShape(input->m_SpaceID, shape, attrDim); + + if (adios2_type_string == attrType) + { + size_t strSize = H5Tget_size(input->m_TypeID); + htri_t isVariableSize = H5Tis_variable_str(input->m_TypeID); + /*printf("attr: %s is string array, is variable str? %d, " + "H5Tget_size=%lu\n", + input->m_Name, isVariableSize, strSize); + */ + if (isVariableSize) + return adios2_define_attribute_array(io, fullPath, attrType, + (input->m_Data), shape[0]); + else + { + int i; + + char *arrayOfStr[shape[0]]; + for (i = 0; i < shape[0]; i++) + { + arrayOfStr[i] = malloc(sizeof(char) * strSize + 1); + strncpy(arrayOfStr[i], + (char *)(input->m_Data) + strSize * i, strSize); + arrayOfStr[i][strSize] = '\0'; + + // printf(".... output attr: %d, [%s]", i, arrayOfStr[i]); + } + adios2_attribute *result = adios2_define_attribute_array( + io, fullPath, attrType, arrayOfStr, shape[0]); + for (i = 0; i < shape[0]; i++) + free(arrayOfStr[i]); + return result; + } + } + else + // return adios2_define_attribute_array(io, fullPath, attrType, + // &(input->m_Data), shape[0]); + return adios2_define_attribute_array(io, fullPath, attrType, + (input->m_Data), shape[0]); + } +} + +adios2_attribute *gADIOS2InqAttr(adios2_io *io, const char *name) +{ + return adios2_inquire_attribute(io, name); +} + +bool gADIOS2RemoveAttr(adios2_io *io, const char *name) +{ + adios2_bool result; + adios2_remove_attribute(&result, io, name); + return (adios2_true == result); +} + +hid_t H5VL_adios_register(void) +{ + if (H5I_VOL != H5Iget_type(H5VL_ADIOS_g)) + { + + H5VL_ADIOS_g = H5VLregister_connector(&H5VL_adios2_def, H5P_DEFAULT); + if (H5VL_ADIOS_g <= 0) + { + SHOW_ERROR_MSG( + " [ECP ADIOS VOL ERROR] with H5VLregister_connector\n"); + return -1; + } + } + + return H5VL_ADIOS_g; +} + +/* + */ +herr_t H5P_unset_adios() { return H5VLunregister_connector(H5VL_ADIOS_g); } From 0344a150c59a17ca7f27a58b23ccf28ed12913e0 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Mon, 17 Jul 2023 22:15:18 -0400 Subject: [PATCH 035/183] Added changes to comply with EOL policy --- docs/user_guide/make.bat | 526 +-- source/adios2/toolkit/sst/cp/cp_reader.c | 4862 +++++++++++----------- source/h5vol/H5VolReadWrite.h | 302 +- 3 files changed, 2845 insertions(+), 2845 deletions(-) diff --git a/docs/user_guide/make.bat b/docs/user_guide/make.bat index 23ab83d412..fec0995b7a 100644 --- a/docs/user_guide/make.bat +++ b/docs/user_guide/make.bat @@ -1,263 +1,263 @@ -@ECHO OFF - -REM Command file for Sphinx documentation - -if "%SPHINXBUILD%" == "" ( - set SPHINXBUILD=sphinx-build -) -set BUILDDIR=build -set ALLSPHINXOPTS=-d %BUILDDIR%/doctrees %SPHINXOPTS% source -set I18NSPHINXOPTS=%SPHINXOPTS% source -if NOT "%PAPER%" == "" ( - set ALLSPHINXOPTS=-D latex_paper_size=%PAPER% %ALLSPHINXOPTS% - set I18NSPHINXOPTS=-D latex_paper_size=%PAPER% %I18NSPHINXOPTS% -) - -if "%1" == "" goto help - -if "%1" == "help" ( - :help - echo.Please use `make ^` where ^ is one of - echo. html to make standalone HTML files - echo. dirhtml to make HTML files named index.html in directories - echo. singlehtml to make a single large HTML file - echo. pickle to make pickle files - echo. json to make JSON files - echo. htmlhelp to make HTML files and a HTML help project - echo. qthelp to make HTML files and a qthelp project - echo. devhelp to make HTML files and a Devhelp project - echo. epub to make an epub - echo. latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter - echo. text to make text files - echo. man to make manual pages - echo. texinfo to make Texinfo files - echo. gettext to make PO message catalogs - echo. changes to make an overview over all changed/added/deprecated items - echo. xml to make Docutils-native XML files - echo. pseudoxml to make pseudoxml-XML files for display purposes - echo. linkcheck to check all external links for integrity - echo. doctest to run all doctests embedded in the documentation if enabled - echo. coverage to run coverage check of the documentation if enabled - goto end -) - -if "%1" == "clean" ( - for /d %%i in (%BUILDDIR%\*) do rmdir /q /s %%i - del /q /s %BUILDDIR%\* - goto end -) - - -REM Check if sphinx-build is available and fallback to Python version if any -%SPHINXBUILD% 1>NUL 2>NUL -if errorlevel 9009 goto sphinx_python -goto sphinx_ok - -:sphinx_python - -set SPHINXBUILD=python -m sphinx.__init__ -%SPHINXBUILD% 2> nul -if errorlevel 9009 ( - echo. - echo.The 'sphinx-build' command was not found. Make sure you have Sphinx - echo.installed, then set the SPHINXBUILD environment variable to point - echo.to the full path of the 'sphinx-build' executable. Alternatively you - echo.may add the Sphinx directory to PATH. - echo. - echo.If you don't have Sphinx installed, grab it from - echo.http://sphinx-doc.org/ - exit /b 1 -) - -:sphinx_ok - - -if "%1" == "html" ( - %SPHINXBUILD% -b html %ALLSPHINXOPTS% %BUILDDIR%/html - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The HTML pages are in %BUILDDIR%/html. - goto end -) - -if "%1" == "dirhtml" ( - %SPHINXBUILD% -b dirhtml %ALLSPHINXOPTS% %BUILDDIR%/dirhtml - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The HTML pages are in %BUILDDIR%/dirhtml. - goto end -) - -if "%1" == "singlehtml" ( - %SPHINXBUILD% -b singlehtml %ALLSPHINXOPTS% %BUILDDIR%/singlehtml - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The HTML pages are in %BUILDDIR%/singlehtml. - goto end -) - -if "%1" == "pickle" ( - %SPHINXBUILD% -b pickle %ALLSPHINXOPTS% %BUILDDIR%/pickle - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can process the pickle files. - goto end -) - -if "%1" == "json" ( - %SPHINXBUILD% -b json %ALLSPHINXOPTS% %BUILDDIR%/json - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can process the JSON files. - goto end -) - -if "%1" == "htmlhelp" ( - %SPHINXBUILD% -b htmlhelp %ALLSPHINXOPTS% %BUILDDIR%/htmlhelp - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can run HTML Help Workshop with the ^ -.hhp project file in %BUILDDIR%/htmlhelp. - goto end -) - -if "%1" == "qthelp" ( - %SPHINXBUILD% -b qthelp %ALLSPHINXOPTS% %BUILDDIR%/qthelp - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can run "qcollectiongenerator" with the ^ -.qhcp project file in %BUILDDIR%/qthelp, like this: - echo.^> qcollectiongenerator %BUILDDIR%\qthelp\ADIOS2.qhcp - echo.To view the help file: - echo.^> assistant -collectionFile %BUILDDIR%\qthelp\ADIOS2.ghc - goto end -) - -if "%1" == "devhelp" ( - %SPHINXBUILD% -b devhelp %ALLSPHINXOPTS% %BUILDDIR%/devhelp - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. - goto end -) - -if "%1" == "epub" ( - %SPHINXBUILD% -b epub %ALLSPHINXOPTS% %BUILDDIR%/epub - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The epub file is in %BUILDDIR%/epub. - goto end -) - -if "%1" == "latex" ( - %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; the LaTeX files are in %BUILDDIR%/latex. - goto end -) - -if "%1" == "latexpdf" ( - %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex - cd %BUILDDIR%/latex - make all-pdf - cd %~dp0 - echo. - echo.Build finished; the PDF files are in %BUILDDIR%/latex. - goto end -) - -if "%1" == "latexpdfja" ( - %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex - cd %BUILDDIR%/latex - make all-pdf-ja - cd %~dp0 - echo. - echo.Build finished; the PDF files are in %BUILDDIR%/latex. - goto end -) - -if "%1" == "text" ( - %SPHINXBUILD% -b text %ALLSPHINXOPTS% %BUILDDIR%/text - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The text files are in %BUILDDIR%/text. - goto end -) - -if "%1" == "man" ( - %SPHINXBUILD% -b man %ALLSPHINXOPTS% %BUILDDIR%/man - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The manual pages are in %BUILDDIR%/man. - goto end -) - -if "%1" == "texinfo" ( - %SPHINXBUILD% -b texinfo %ALLSPHINXOPTS% %BUILDDIR%/texinfo - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The Texinfo files are in %BUILDDIR%/texinfo. - goto end -) - -if "%1" == "gettext" ( - %SPHINXBUILD% -b gettext %I18NSPHINXOPTS% %BUILDDIR%/locale - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The message catalogs are in %BUILDDIR%/locale. - goto end -) - -if "%1" == "changes" ( - %SPHINXBUILD% -b changes %ALLSPHINXOPTS% %BUILDDIR%/changes - if errorlevel 1 exit /b 1 - echo. - echo.The overview file is in %BUILDDIR%/changes. - goto end -) - -if "%1" == "linkcheck" ( - %SPHINXBUILD% -b linkcheck %ALLSPHINXOPTS% %BUILDDIR%/linkcheck - if errorlevel 1 exit /b 1 - echo. - echo.Link check complete; look for any errors in the above output ^ -or in %BUILDDIR%/linkcheck/output.txt. - goto end -) - -if "%1" == "doctest" ( - %SPHINXBUILD% -b doctest %ALLSPHINXOPTS% %BUILDDIR%/doctest - if errorlevel 1 exit /b 1 - echo. - echo.Testing of doctests in the sources finished, look at the ^ -results in %BUILDDIR%/doctest/output.txt. - goto end -) - -if "%1" == "coverage" ( - %SPHINXBUILD% -b coverage %ALLSPHINXOPTS% %BUILDDIR%/coverage - if errorlevel 1 exit /b 1 - echo. - echo.Testing of coverage in the sources finished, look at the ^ -results in %BUILDDIR%/coverage/python.txt. - goto end -) - -if "%1" == "xml" ( - %SPHINXBUILD% -b xml %ALLSPHINXOPTS% %BUILDDIR%/xml - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The XML files are in %BUILDDIR%/xml. - goto end -) - -if "%1" == "pseudoxml" ( - %SPHINXBUILD% -b pseudoxml %ALLSPHINXOPTS% %BUILDDIR%/pseudoxml - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The pseudo-XML files are in %BUILDDIR%/pseudoxml. - goto end -) - -:end +@ECHO OFF + +REM Command file for Sphinx documentation + +if "%SPHINXBUILD%" == "" ( + set SPHINXBUILD=sphinx-build +) +set BUILDDIR=build +set ALLSPHINXOPTS=-d %BUILDDIR%/doctrees %SPHINXOPTS% source +set I18NSPHINXOPTS=%SPHINXOPTS% source +if NOT "%PAPER%" == "" ( + set ALLSPHINXOPTS=-D latex_paper_size=%PAPER% %ALLSPHINXOPTS% + set I18NSPHINXOPTS=-D latex_paper_size=%PAPER% %I18NSPHINXOPTS% +) + +if "%1" == "" goto help + +if "%1" == "help" ( + :help + echo.Please use `make ^` where ^ is one of + echo. html to make standalone HTML files + echo. dirhtml to make HTML files named index.html in directories + echo. singlehtml to make a single large HTML file + echo. pickle to make pickle files + echo. json to make JSON files + echo. htmlhelp to make HTML files and a HTML help project + echo. qthelp to make HTML files and a qthelp project + echo. devhelp to make HTML files and a Devhelp project + echo. epub to make an epub + echo. latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter + echo. text to make text files + echo. man to make manual pages + echo. texinfo to make Texinfo files + echo. gettext to make PO message catalogs + echo. changes to make an overview over all changed/added/deprecated items + echo. xml to make Docutils-native XML files + echo. pseudoxml to make pseudoxml-XML files for display purposes + echo. linkcheck to check all external links for integrity + echo. doctest to run all doctests embedded in the documentation if enabled + echo. coverage to run coverage check of the documentation if enabled + goto end +) + +if "%1" == "clean" ( + for /d %%i in (%BUILDDIR%\*) do rmdir /q /s %%i + del /q /s %BUILDDIR%\* + goto end +) + + +REM Check if sphinx-build is available and fallback to Python version if any +%SPHINXBUILD% 1>NUL 2>NUL +if errorlevel 9009 goto sphinx_python +goto sphinx_ok + +:sphinx_python + +set SPHINXBUILD=python -m sphinx.__init__ +%SPHINXBUILD% 2> nul +if errorlevel 9009 ( + echo. + echo.The 'sphinx-build' command was not found. Make sure you have Sphinx + echo.installed, then set the SPHINXBUILD environment variable to point + echo.to the full path of the 'sphinx-build' executable. Alternatively you + echo.may add the Sphinx directory to PATH. + echo. + echo.If you don't have Sphinx installed, grab it from + echo.http://sphinx-doc.org/ + exit /b 1 +) + +:sphinx_ok + + +if "%1" == "html" ( + %SPHINXBUILD% -b html %ALLSPHINXOPTS% %BUILDDIR%/html + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The HTML pages are in %BUILDDIR%/html. + goto end +) + +if "%1" == "dirhtml" ( + %SPHINXBUILD% -b dirhtml %ALLSPHINXOPTS% %BUILDDIR%/dirhtml + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The HTML pages are in %BUILDDIR%/dirhtml. + goto end +) + +if "%1" == "singlehtml" ( + %SPHINXBUILD% -b singlehtml %ALLSPHINXOPTS% %BUILDDIR%/singlehtml + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The HTML pages are in %BUILDDIR%/singlehtml. + goto end +) + +if "%1" == "pickle" ( + %SPHINXBUILD% -b pickle %ALLSPHINXOPTS% %BUILDDIR%/pickle + if errorlevel 1 exit /b 1 + echo. + echo.Build finished; now you can process the pickle files. + goto end +) + +if "%1" == "json" ( + %SPHINXBUILD% -b json %ALLSPHINXOPTS% %BUILDDIR%/json + if errorlevel 1 exit /b 1 + echo. + echo.Build finished; now you can process the JSON files. + goto end +) + +if "%1" == "htmlhelp" ( + %SPHINXBUILD% -b htmlhelp %ALLSPHINXOPTS% %BUILDDIR%/htmlhelp + if errorlevel 1 exit /b 1 + echo. + echo.Build finished; now you can run HTML Help Workshop with the ^ +.hhp project file in %BUILDDIR%/htmlhelp. + goto end +) + +if "%1" == "qthelp" ( + %SPHINXBUILD% -b qthelp %ALLSPHINXOPTS% %BUILDDIR%/qthelp + if errorlevel 1 exit /b 1 + echo. + echo.Build finished; now you can run "qcollectiongenerator" with the ^ +.qhcp project file in %BUILDDIR%/qthelp, like this: + echo.^> qcollectiongenerator %BUILDDIR%\qthelp\ADIOS2.qhcp + echo.To view the help file: + echo.^> assistant -collectionFile %BUILDDIR%\qthelp\ADIOS2.ghc + goto end +) + +if "%1" == "devhelp" ( + %SPHINXBUILD% -b devhelp %ALLSPHINXOPTS% %BUILDDIR%/devhelp + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. + goto end +) + +if "%1" == "epub" ( + %SPHINXBUILD% -b epub %ALLSPHINXOPTS% %BUILDDIR%/epub + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The epub file is in %BUILDDIR%/epub. + goto end +) + +if "%1" == "latex" ( + %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex + if errorlevel 1 exit /b 1 + echo. + echo.Build finished; the LaTeX files are in %BUILDDIR%/latex. + goto end +) + +if "%1" == "latexpdf" ( + %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex + cd %BUILDDIR%/latex + make all-pdf + cd %~dp0 + echo. + echo.Build finished; the PDF files are in %BUILDDIR%/latex. + goto end +) + +if "%1" == "latexpdfja" ( + %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex + cd %BUILDDIR%/latex + make all-pdf-ja + cd %~dp0 + echo. + echo.Build finished; the PDF files are in %BUILDDIR%/latex. + goto end +) + +if "%1" == "text" ( + %SPHINXBUILD% -b text %ALLSPHINXOPTS% %BUILDDIR%/text + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The text files are in %BUILDDIR%/text. + goto end +) + +if "%1" == "man" ( + %SPHINXBUILD% -b man %ALLSPHINXOPTS% %BUILDDIR%/man + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The manual pages are in %BUILDDIR%/man. + goto end +) + +if "%1" == "texinfo" ( + %SPHINXBUILD% -b texinfo %ALLSPHINXOPTS% %BUILDDIR%/texinfo + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The Texinfo files are in %BUILDDIR%/texinfo. + goto end +) + +if "%1" == "gettext" ( + %SPHINXBUILD% -b gettext %I18NSPHINXOPTS% %BUILDDIR%/locale + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The message catalogs are in %BUILDDIR%/locale. + goto end +) + +if "%1" == "changes" ( + %SPHINXBUILD% -b changes %ALLSPHINXOPTS% %BUILDDIR%/changes + if errorlevel 1 exit /b 1 + echo. + echo.The overview file is in %BUILDDIR%/changes. + goto end +) + +if "%1" == "linkcheck" ( + %SPHINXBUILD% -b linkcheck %ALLSPHINXOPTS% %BUILDDIR%/linkcheck + if errorlevel 1 exit /b 1 + echo. + echo.Link check complete; look for any errors in the above output ^ +or in %BUILDDIR%/linkcheck/output.txt. + goto end +) + +if "%1" == "doctest" ( + %SPHINXBUILD% -b doctest %ALLSPHINXOPTS% %BUILDDIR%/doctest + if errorlevel 1 exit /b 1 + echo. + echo.Testing of doctests in the sources finished, look at the ^ +results in %BUILDDIR%/doctest/output.txt. + goto end +) + +if "%1" == "coverage" ( + %SPHINXBUILD% -b coverage %ALLSPHINXOPTS% %BUILDDIR%/coverage + if errorlevel 1 exit /b 1 + echo. + echo.Testing of coverage in the sources finished, look at the ^ +results in %BUILDDIR%/coverage/python.txt. + goto end +) + +if "%1" == "xml" ( + %SPHINXBUILD% -b xml %ALLSPHINXOPTS% %BUILDDIR%/xml + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The XML files are in %BUILDDIR%/xml. + goto end +) + +if "%1" == "pseudoxml" ( + %SPHINXBUILD% -b pseudoxml %ALLSPHINXOPTS% %BUILDDIR%/pseudoxml + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The pseudo-XML files are in %BUILDDIR%/pseudoxml. + goto end +) + +:end diff --git a/source/adios2/toolkit/sst/cp/cp_reader.c b/source/adios2/toolkit/sst/cp/cp_reader.c index a0a1bd3a66..b3bdf86c45 100644 --- a/source/adios2/toolkit/sst/cp/cp_reader.c +++ b/source/adios2/toolkit/sst/cp/cp_reader.c @@ -1,2431 +1,2431 @@ -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include - -#include "adios2/common/ADIOSConfig.h" -#include -#include -#include - -#include "sst.h" - -#include "cp_internal.h" -#include - -#define gettid() pthread_self() -#ifdef MUTEX_DEBUG -#define STREAM_MUTEX_LOCK(Stream) \ - { \ - fprintf(stderr, "(PID %lx, TID %lx) CP_READER Trying lock line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - pthread_mutex_lock(&Stream->DataLock); \ - Stream->Locked++; \ - fprintf(stderr, "(PID %lx, TID %lx) CP_READER Got lock\n", \ - (long)getpid(), (long)gettid()); \ - } - -#define STREAM_MUTEX_UNLOCK(Stream) \ - { \ - fprintf(stderr, "(PID %lx, TID %lx) CP_READER UNlocking line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - Stream->Locked--; \ - pthread_mutex_unlock(&Stream->DataLock); \ - } -#define STREAM_CONDITION_WAIT(Stream) \ - { \ - fprintf( \ - stderr, \ - "(PID %lx, TID %lx) CP_READER Dropping Condition Lock line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - Stream->Locked = 0; \ - pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ - fprintf( \ - stderr, \ - "(PID %lx, TID %lx) CP_READER Acquired Condition Lock line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - Stream->Locked = 1; \ - } -#define STREAM_CONDITION_SIGNAL(Stream) \ - { \ - assert(Stream->Locked == 1); \ - fprintf(stderr, \ - "(PID %lx, TID %lx) CP_READER Signalling Condition line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - pthread_cond_signal(&Stream->DataCondition); \ - } - -#define STREAM_ASSERT_LOCKED(Stream) \ - { \ - assert(Stream->Locked == 1); \ - } -#else -#define STREAM_MUTEX_LOCK(Stream) \ - { \ - pthread_mutex_lock(&Stream->DataLock); \ - } -#define STREAM_MUTEX_UNLOCK(Stream) \ - { \ - pthread_mutex_unlock(&Stream->DataLock); \ - } -#define STREAM_CONDITION_WAIT(Stream) \ - { \ - pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ - } -#define STREAM_CONDITION_SIGNAL(Stream) \ - { \ - pthread_cond_signal(&Stream->DataCondition); \ - } -#define STREAM_ASSERT_LOCKED(Stream) -#endif - -static char *readContactInfoFile(const char *Name, SstStream Stream, - int Timeout) -{ - size_t len = strlen(Name) + strlen(SST_POSTFIX) + 1; - char *FileName = malloc(len); - int Badfile = 0; - int ZeroCount = 0; - FILE *WriterInfo; - int64_t TimeoutRemainingMsec = Timeout * 1000; - int64_t WaitWarningRemainingMsec = 5 * 1000; - long SleepInterval = 100000; - snprintf(FileName, len, "%s" SST_POSTFIX, Name); - CP_verbose(Stream, PerRankVerbose, - "Looking for writer contact in file %s, with timeout %d secs\n", - FileName, Timeout); -redo: - WriterInfo = fopen(FileName, "r"); - while (!WriterInfo) - { - // CMusleep(Stream->CPInfo->cm, SleepInterval); - usleep(SleepInterval); - TimeoutRemainingMsec -= (SleepInterval / 1000); - WaitWarningRemainingMsec -= (SleepInterval / 1000); - if (WaitWarningRemainingMsec == 0) - { - fprintf(stderr, - "ADIOS2 SST Engine waiting for contact information " - "file %s to be created\n", - Name); - } - if (TimeoutRemainingMsec <= 0) - { - free(FileName); - return NULL; - } - WriterInfo = fopen(FileName, "r"); - } - struct stat Buf; - fstat(fileno(WriterInfo), &Buf); - int Size = Buf.st_size; - if (Size == 0) - { - // Try again, it might look zero momentarily, but shouldn't stay that - // way. - ZeroCount++; - if (ZeroCount < 5) - { - // We'll give it several attempts (and some time) to go non-zero - usleep(SleepInterval); - goto redo; - } - } - - if (Size < strlen(SSTMAGICV0)) - { - Badfile++; - } - else - { - char Tmp[strlen(SSTMAGICV0)]; - if (fread(Tmp, strlen(SSTMAGICV0), 1, WriterInfo) != 1) - { - fprintf(stderr, - "Filesystem read failed in SST Open, failing operation\n"); - fclose(WriterInfo); - Badfile++; - } - Size -= strlen(SSTMAGICV0); - if (strncmp(Tmp, SSTMAGICV0, strlen(SSTMAGICV0)) != 0) - { - Badfile++; - } - } - if (Badfile) - { - fprintf(stderr, - "!!! File %s is not an ADIOS2 SST Engine Contact file\n", - FileName); - free(FileName); - fclose(WriterInfo); - return NULL; - } - free(FileName); - char *Buffer = calloc(1, Size + 1); - if (fread(Buffer, Size, 1, WriterInfo) != 1) - { - fprintf(stderr, - "Filesystem read failed in SST Open, failing operation\n"); - free(Buffer); - fclose(WriterInfo); - return NULL; - } - fclose(WriterInfo); - return Buffer; -} - -static char *readContactInfoScreen(const char *Name, SstStream Stream) -{ - char Input[10240]; - char *Skip = Input; - fprintf(stdout, - "Please enter the contact information associated with SST " - "input stream \"%s\":\n", - Name); - if (fgets(Input, sizeof(Input), stdin) == NULL) - { - fprintf(stdout, "Read from stdin failed, exiting\n"); - exit(1); - } - while (isspace(*Skip)) - Skip++; - return strdup(Skip); -} - -static char *readContactInfo(const char *Name, SstStream Stream, int Timeout) -{ - switch (Stream->RegistrationMethod) - { - case SstRegisterFile: - return readContactInfoFile(Name, Stream, Timeout); - case SstRegisterScreen: - return readContactInfoScreen(Name, Stream); - case SstRegisterCloud: - /* not yet */ - return NULL; - } - return NULL; -} - -// ReaderConnCloseHandler is called by the network handler thread in -// response to the failure of a network connection to the writer. -extern void ReaderConnCloseHandler(CManager cm, CMConnection ClosedConn, - void *client_data) -{ - PERFSTUBS_TIMER_START_FUNC(timer); - SstStream Stream = (SstStream)client_data; - int FailedPeerRank = -1; - STREAM_MUTEX_LOCK(Stream); - CP_verbose(Stream, PerRankVerbose, "Reader-side close handler invoked\n"); - if ((Stream->Status == Destroyed) || (!Stream->ConnectionsToWriter)) - { - STREAM_MUTEX_UNLOCK(Stream); - return; - } - for (int i = 0; i < Stream->WriterCohortSize; i++) - { - if (Stream->ConnectionsToWriter[i].CMconn == ClosedConn) - { - FailedPeerRank = i; - } - } - - if (Stream->Status == Established) - { - if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && - (Stream->Rank != 0)) - { - CP_verbose(Stream, PerRankVerbose, - "Reader-side Rank received a " - "connection-close event during normal " - "operations, but might be part of shutdown " - "Don't change stream status.\n"); - /* if this happens and *is* a failure, we'll get the status from - * rank 0 later */ - } - else - { - /* - * tag our reader instance as failed, IFF this came from someone we - * should have gotten a CLOSE from. I.E. a reverse peer - */ - CP_verbose(Stream, PerRankVerbose, - "Reader-side Rank received a " - "connection-close event during normal " - "operations, peer likely failed\n"); - if (FailedPeerRank == Stream->FailureContactRank) - { - Stream->Status = PeerFailed; - STREAM_CONDITION_SIGNAL(Stream); - } - } - CP_verbose( - Stream, PerRankVerbose, - "The close was for connection to writer peer %d, notifying DP\n", - FailedPeerRank); - STREAM_MUTEX_UNLOCK(Stream); - /* notify DP of failure. This should terminate any waits currently - * pending in the DP for that rank */ - Stream->DP_Interface->notifyConnFailure(&Svcs, Stream->DP_Stream, - FailedPeerRank); - } - else if (Stream->Status == PeerClosed) - { - /* ignore this. We expect a close after the connection is marked closed - */ - CP_verbose(Stream, PerRankVerbose, - "Reader-side Rank received a " - "connection-close event after close, " - "not unexpected\n"); - STREAM_MUTEX_UNLOCK(Stream); - // Don't notify DP, because this is part of normal shutdown and we don't - // want to kill pending reads - } - else if (Stream->Status == PeerFailed) - { - CP_verbose( - Stream, PerRankVerbose, - "Reader-side Rank received a " - "connection-close event after PeerFailed, already notified DP \n"); - // Don't notify DP, because we already have */ - STREAM_MUTEX_UNLOCK(Stream); - } - else - { - CP_verbose(Stream, CriticalVerbose, - "Got an unexpected connection close event\n"); - CP_verbose(Stream, PerStepVerbose, - "Reader-side Rank received a " - "connection-close event in unexpected " - "status %s\n", - SSTStreamStatusStr[Stream->Status]); - STREAM_MUTEX_UNLOCK(Stream); - } - PERFSTUBS_TIMER_STOP_FUNC(timer); -} - -// SstCurrentStep is only called by the main program thread and -// needs no locking as it only accesses data set by the main thread -extern long SstCurrentStep(SstStream Stream) { return Stream->ReaderTimestep; } - -static void releasePriorTimesteps(SstStream Stream, long Latest); -static void sendOneToEachWriterRank(SstStream s, CMFormat f, void *Msg, - void **WS_StreamPtr); - -static void **ParticipateInReaderInitDataExchange(SstStream Stream, - void *dpInfo, - void **ret_data_block) -{ - - struct _CP_DP_PairInfo combined_init; - struct _CP_ReaderInitInfo cpInfo; - - struct _CP_DP_PairInfo **pointers; - - cpInfo.ContactInfo = CP_GetContactString(Stream, NULL); - cpInfo.ReaderID = Stream; - - combined_init.CP_Info = (void **)&cpInfo; - combined_init.DP_Info = dpInfo; - - pointers = (struct _CP_DP_PairInfo **)CP_consolidateDataToRankZero( - Stream, &combined_init, Stream->CPInfo->PerRankReaderInfoFormat, - ret_data_block); - free(cpInfo.ContactInfo); - return (void **)pointers; -} - -static int HasAllPeers(SstStream Stream) -{ - int i, StillWaiting = 0; - if (!Stream->ConnectionsToWriter) - { - CP_verbose(Stream, PerRankVerbose, - "(PID %lx, TID %lx) Waiting for first Peer notification\n", - (long)gettid(), (long)getpid()); - return 0; - } - i = 0; - while (Stream->Peers[i] != -1) - { - int peer = Stream->Peers[i]; - if (Stream->ConnectionsToWriter[peer].CMconn == NULL) - StillWaiting++; - i++; - } - if (StillWaiting == 0) - { - CP_verbose(Stream, PerRankVerbose, - "Rank %d has all forward peer connections\n", Stream->Rank); - return 1; - } - else - { - CP_verbose(Stream, PerRankVerbose, - "Rank %d waiting for %d forward peer connections\n", - Stream->Rank, StillWaiting); - return 0; - } -} - -attr_list ContactWriter(SstStream Stream, char *Filename, SstParams Params, - SMPI_Comm comm, CMConnection *conn_p, - void **WriterFileID_p) -{ - int DataSize = 0; - attr_list RetVal = NULL; - - if (Stream->Rank == 0) - { - char *Writer0Contact = - readContactInfo(Filename, Stream, Params->OpenTimeoutSecs); - char *CMContactString = NULL; - CMConnection conn = NULL; - attr_list WriterRank0Contact; - - if (Writer0Contact) - { - - CMContactString = - malloc(strlen(Writer0Contact)); /* at least long enough */ - sscanf(Writer0Contact, "%p:%s", WriterFileID_p, CMContactString); - // printf("Writer contact info is fileID %p, contact info - // %s\n", - // WriterFileID, CMContactString); - free(Writer0Contact); - - if (globalNetinfoCallback) - { - (globalNetinfoCallback)(1, CP_GetContactString(Stream, NULL), - IPDiagString); - (globalNetinfoCallback)(2, CMContactString, NULL); - } - WriterRank0Contact = attr_list_from_string(CMContactString); - conn = CMget_conn(Stream->CPInfo->SharedCM->cm, WriterRank0Contact); - free_attr_list(WriterRank0Contact); - } - if (conn) - { - DataSize = strlen(CMContactString) + 1; - *conn_p = conn; - } - else - { - DataSize = 0; - *conn_p = NULL; - } - SMPI_Bcast(&DataSize, 1, SMPI_INT, 0, Stream->mpiComm); - if (DataSize != 0) - { - SMPI_Bcast(CMContactString, DataSize, SMPI_CHAR, 0, - Stream->mpiComm); - RetVal = attr_list_from_string(CMContactString); - } - if (CMContactString) - free(CMContactString); - } - else - { - SMPI_Bcast(&DataSize, 1, SMPI_INT, 0, Stream->mpiComm); - if (DataSize != 0) - { - char *Buffer = malloc(DataSize); - SMPI_Bcast(Buffer, DataSize, SMPI_CHAR, 0, Stream->mpiComm); - RetVal = attr_list_from_string(Buffer); - free(Buffer); - } - } - return RetVal; -} - -// SstReaderOpen is an SST reader entry point, called only by the -// main program thread It must be called by all ranks, and as it -// creates the only shared data structure, no locking is necessary -// prior to the CMCondition_wait() that is triggered in response to -// reader regsitration. -SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) -{ - SstStream Stream; - void *dpInfo; - struct _CP_DP_PairInfo **pointers; - void *data_block; - void *free_block; - writer_data_t ReturnData; - struct _ReaderActivateMsg Msg; - struct timeval Start, Stop, Diff; - char *Filename = strdup(Name); - CMConnection rank0_to_rank0_conn = NULL; - void *WriterFileID; - char NeededDataPlane[32] = { - 0}; // Don't name a data plane longer than 31 chars - - Stream = CP_newStream(); - Stream->Role = ReaderRole; - Stream->mpiComm = comm; - - SMPI_Comm_rank(Stream->mpiComm, &Stream->Rank); - SMPI_Comm_size(Stream->mpiComm, &Stream->CohortSize); - - CP_validateParams(Stream, Params, 0 /* reader */); - Stream->ConfigParams = Params; - - Stream->CPInfo = CP_getCPInfo(Stream->ConfigParams->ControlModule); - - Stream->FinalTimestep = INT_MAX; /* set this on close */ - Stream->LastDPNotifiedTimestep = -1; - - gettimeofday(&Start, NULL); - - attr_list WriterContactAttributes = ContactWriter( - Stream, Filename, Params, comm, &rank0_to_rank0_conn, &WriterFileID); - - if (WriterContactAttributes == NULL) - { - SstStreamDestroy(Stream); - free(Stream); - free(Filename); - return NULL; - } - - if (Stream->Rank == 0) - { - struct _DPQueryMsg DPQuery; - memset(&DPQuery, 0, sizeof(DPQuery)); - - DPQuery.WriterFile = WriterFileID; - DPQuery.WriterResponseCondition = - CMCondition_get(Stream->CPInfo->SharedCM->cm, rank0_to_rank0_conn); - - CMCondition_set_client_data(Stream->CPInfo->SharedCM->cm, - DPQuery.WriterResponseCondition, - &NeededDataPlane[0]); - - if (CMwrite(rank0_to_rank0_conn, - Stream->CPInfo->SharedCM->DPQueryFormat, &DPQuery) != 1) - { - CP_verbose( - Stream, CriticalVerbose, - "DPQuery message failed to send to writer in SstReaderOpen\n"); - } - - /* wait for "go" from writer */ - CP_verbose( - Stream, PerRankVerbose, - "Waiting for writer DPResponse message in SstReadOpen(\"%s\")\n", - Filename, DPQuery.WriterResponseCondition); - int result = CMCondition_wait(Stream->CPInfo->SharedCM->cm, - DPQuery.WriterResponseCondition); - if (result == 0) - { - fprintf(stderr, "The writer exited before contact could be made, " - "SST Open failed.\n"); - return NULL; - } - CP_verbose(Stream, PerRankVerbose, - "finished wait writer DPresponse message in read_open, " - "WRITER is using \"%s\" DataPlane\n", - &NeededDataPlane[0]); - - // NeededDP should now contain the name of the dataplane the writer is - // using - SMPI_Bcast(&NeededDataPlane[0], sizeof(NeededDataPlane), SMPI_CHAR, 0, - Stream->mpiComm); - } - else - { - SMPI_Bcast(&NeededDataPlane[0], sizeof(NeededDataPlane), SMPI_CHAR, 0, - Stream->mpiComm); - } - { - char *RequestedDP = Stream->ConfigParams->DataTransport; - Stream->ConfigParams->DataTransport = strdup(&NeededDataPlane[0]); - Stream->DP_Interface = - SelectDP(&Svcs, Stream, Stream->ConfigParams, Stream->Rank); - if (Stream->DP_Interface) - if (strcmp(Stream->DP_Interface->DPName, &NeededDataPlane[0]) != 0) - { - fprintf(stderr, - "The writer is using the %s DataPlane for SST data " - "transport, but the reader has failed to load this " - "transport. Communication cannot occur. See the SST " - "DataTransport engine parameter to force a match.", - NeededDataPlane); - return NULL; - } - if (RequestedDP) - free(RequestedDP); - } - - FinalizeCPInfo(Stream->CPInfo, Stream->DP_Interface); - - Stream->DP_Stream = Stream->DP_Interface->initReader( - &Svcs, Stream, &dpInfo, Stream->ConfigParams, WriterContactAttributes, - &Stream->Stats); - - free_attr_list(WriterContactAttributes); - - pointers = (struct _CP_DP_PairInfo **)ParticipateInReaderInitDataExchange( - Stream, dpInfo, &data_block); - - if (Stream->Rank == 0) - { - struct _CombinedWriterInfo WriterData; - struct _ReaderRegisterMsg ReaderRegister; - - memset(&ReaderRegister, 0, sizeof(ReaderRegister)); - memset(&WriterData, 0, sizeof(WriterData)); - WriterData.WriterCohortSize = -1; - ReaderRegister.WriterFile = WriterFileID; - ReaderRegister.WriterResponseCondition = - CMCondition_get(Stream->CPInfo->SharedCM->cm, rank0_to_rank0_conn); - ReaderRegister.ReaderCohortSize = Stream->CohortSize; - switch (Stream->ConfigParams->SpeculativePreloadMode) - { - case SpecPreloadOff: - case SpecPreloadOn: - ReaderRegister.SpecPreload = - (SpeculativePreloadMode) - Stream->ConfigParams->SpeculativePreloadMode; - break; - case SpecPreloadAuto: - ReaderRegister.SpecPreload = SpecPreloadOff; - if (Stream->CohortSize <= - Stream->ConfigParams->SpecAutoNodeThreshold) - { - ReaderRegister.SpecPreload = SpecPreloadOn; - } - break; - } - - ReaderRegister.CP_ReaderInfo = - malloc(ReaderRegister.ReaderCohortSize * sizeof(void *)); - ReaderRegister.DP_ReaderInfo = - malloc(ReaderRegister.ReaderCohortSize * sizeof(void *)); - for (int i = 0; i < ReaderRegister.ReaderCohortSize; i++) - { - ReaderRegister.CP_ReaderInfo[i] = - (CP_ReaderInitInfo)pointers[i]->CP_Info; - ReaderRegister.DP_ReaderInfo[i] = pointers[i]->DP_Info; - } - free(pointers); - - /* the response value is set in the handler */ - volatile struct _WriterResponseMsg *response = NULL; - CMCondition_set_client_data(Stream->CPInfo->SharedCM->cm, - ReaderRegister.WriterResponseCondition, - &response); - - if (CMwrite(rank0_to_rank0_conn, - Stream->CPInfo->SharedCM->ReaderRegisterFormat, - &ReaderRegister) != 1) - { - CP_verbose(Stream, CriticalVerbose, - "Message failed to send to writer in SstReaderOpen\n"); - } - free(ReaderRegister.CP_ReaderInfo); - free(ReaderRegister.DP_ReaderInfo); - - /* wait for "go" from writer */ - CP_verbose( - Stream, PerRankVerbose, - "Waiting for writer response message in SstReadOpen(\"%s\")\n", - Filename, ReaderRegister.WriterResponseCondition); - int result = CMCondition_wait(Stream->CPInfo->SharedCM->cm, - ReaderRegister.WriterResponseCondition); - if (result == 0) - { - fprintf(stderr, "The writer exited before the SST Reader Open " - "could be completed.\n"); - return NULL; - } - CP_verbose(Stream, PerRankVerbose, - "finished wait writer response message in read_open\n"); - - if (response) - { - WriterData.WriterCohortSize = response->WriterCohortSize; - WriterData.WriterConfigParams = response->WriterConfigParams; - WriterData.StartingStepNumber = response->NextStepNumber; - WriterData.CP_WriterInfo = response->CP_WriterInfo; - WriterData.DP_WriterInfo = response->DP_WriterInfo; - } - ReturnData = CP_distributeDataFromRankZero( - Stream, &WriterData, Stream->CPInfo->CombinedWriterInfoFormat, - &free_block); - } - else - { - ReturnData = CP_distributeDataFromRankZero( - Stream, NULL, Stream->CPInfo->CombinedWriterInfoFormat, - &free_block); - } - - free(data_block); - - if (ReturnData->WriterCohortSize == -1) - { - /* Rank 0 found no writer at that contact point, fail the stream */ - free(free_block); - return NULL; - } - - if (Stream->Rank == 0) - { - CP_verbose(Stream, SummaryVerbose, - "Opening Reader Stream.\nWriter stream params are:\n"); - CP_dumpParams(Stream, ReturnData->WriterConfigParams, - 0 /* writer side */); - CP_verbose(Stream, SummaryVerbose, "Reader stream params are:\n"); - CP_dumpParams(Stream, Stream->ConfigParams, 1 /* reader side */); - } - - // printf("I am reader rank %d, my info on writers is:\n", Stream->Rank); - // FMdump_data(FMFormat_of_original(Stream->CPInfo->combined_writer_Format), - // ReturnData, 1024000); - // printf("\n"); - - Stream->WriterCohortSize = ReturnData->WriterCohortSize; - Stream->WriterConfigParams = ReturnData->WriterConfigParams; - if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) && - (Stream->Rank == 0)) - { - CP_verbose(Stream, SummaryVerbose, - "Writer is doing FFS-based marshalling\n"); - } - if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalBP) && - (Stream->Rank == 0)) - { - CP_verbose(Stream, SummaryVerbose, - "Writer is doing BP-based marshalling\n"); - } - if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && - (Stream->Rank == 0)) - { - CP_verbose( - Stream, SummaryVerbose, - "Writer is using Minimum Connection Communication pattern (min)\n"); - } - if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) && - (Stream->Rank == 0)) - { - CP_verbose(Stream, SummaryVerbose, - "Writer is using Peer-based Communication pattern (peer)\n"); - } - STREAM_MUTEX_LOCK(Stream); - Stream->ReaderTimestep = ReturnData->StartingStepNumber - 1; - - if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) - { - /* - * Wait for connections and messages from writer side peers - */ - getPeerArrays(Stream->CohortSize, Stream->Rank, - Stream->WriterCohortSize, &Stream->Peers, NULL); - - while (!HasAllPeers(Stream)) - { - /* wait until we get the timestep metadata or something else changes - */ - STREAM_CONDITION_WAIT(Stream); - } - } - else - { - if (!Stream->ConnectionsToWriter) - { - Stream->ConnectionsToWriter = - calloc(sizeof(CP_PeerConnection), ReturnData->WriterCohortSize); - } - } - - for (int i = 0; i < ReturnData->WriterCohortSize; i++) - { - attr_list attrs = - attr_list_from_string(ReturnData->CP_WriterInfo[i]->ContactInfo); - Stream->ConnectionsToWriter[i].ContactList = attrs; - Stream->ConnectionsToWriter[i].RemoteStreamID = - ReturnData->CP_WriterInfo[i]->WriterID; - } - - // Deref the original connection to writer rank 0 (might still be open as a - // peer) - if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) - { - if (rank0_to_rank0_conn) - { - CMConnection_dereference(rank0_to_rank0_conn); - } - } - else - { - /* only rely on the rank 0 to rank 0 that we already have (if we're rank - * 0) */ - if (rank0_to_rank0_conn) - { - CMConnection conn = rank0_to_rank0_conn; - Stream->ConnectionsToWriter[0].CMconn = conn; - CMconn_register_close_handler(conn, ReaderConnCloseHandler, - (void *)Stream); - } - } - Stream->Status = Established; - gettimeofday(&Stop, NULL); - timersub(&Stop, &Start, &Diff); - Stream->OpenTimeSecs = (double)Diff.tv_usec / 1e6 + Diff.tv_sec; - gettimeofday(&Stream->ValidStartTime, NULL); - Stream->Filename = Filename; - Stream->ParamsBlock = free_block; - STREAM_MUTEX_UNLOCK(Stream); - AddToLastCallFreeList(Stream); - Stream->DP_Interface->provideWriterDataToReader( - &Svcs, Stream->DP_Stream, ReturnData->WriterCohortSize, - Stream->ConnectionsToWriter, ReturnData->DP_WriterInfo); - CP_verbose(Stream, PerRankVerbose, - "Sending Reader Activate messages to writer\n"); - memset(&Msg, 0, sizeof(Msg)); - sendOneToEachWriterRank(Stream, - Stream->CPInfo->SharedCM->ReaderActivateFormat, - &Msg, &Msg.WSR_Stream); - CP_verbose(Stream, PerStepVerbose, - "Finish opening Stream \"%s\", starting with Step number %d\n", - Filename, ReturnData->StartingStepNumber); - - return Stream; -} - -// SstReaderGetParams is an SST entry point only called by the main -// program thread. It can only be called after initialization and -// only accesses data installed durinig initialization, it needs no -// locking. -extern void SstReaderGetParams(SstStream Stream, - SstMarshalMethod *WriterMarshalMethod, - int *WriterIsRowMajor) -{ - *WriterMarshalMethod = - (SstMarshalMethod)Stream->WriterConfigParams->MarshalMethod; - *WriterIsRowMajor = Stream->WriterConfigParams->IsRowMajor; -} - -/* - * CP_PeerSetupHandler is called by the network handler thread in - * response to incoming PeerSetup messages to setup the reader-side - * Peer list - */ -extern void CP_PeerSetupHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) -{ - PERFSTUBS_TIMER_START_FUNC(timer); - SstStream Stream; - struct _PeerSetupMsg *Msg = (struct _PeerSetupMsg *)Msg_v; - Stream = (SstStream)Msg->RS_Stream; - STREAM_MUTEX_LOCK(Stream); - CP_verbose(Stream, TraceVerbose, - "Received peer setup from rank %d, conn %p\n", Msg->WriterRank, - conn); - if (!Stream->ConnectionsToWriter) - { - CP_verbose(Stream, TraceVerbose, "Allocating connections to writer\n"); - Stream->ConnectionsToWriter = - calloc(sizeof(CP_PeerConnection), Msg->WriterCohortSize); - } - CP_verbose(Stream, TraceVerbose, - "Received peer setup from rank %d, conn %p\n", Msg->WriterRank, - conn); - if (Msg->WriterRank != -1) - { - Stream->ConnectionsToWriter[Msg->WriterRank].CMconn = conn; - CMConnection_add_reference(conn); - Stream->FailureContactRank = Msg->WriterRank; - } - CMconn_register_close_handler(conn, ReaderConnCloseHandler, (void *)Stream); - STREAM_CONDITION_SIGNAL(Stream); - STREAM_MUTEX_UNLOCK(Stream); - PERFSTUBS_TIMER_STOP_FUNC(timer); -} - -void queueTimestepMetadataMsgAndNotify(SstStream Stream, - struct _TimestepMetadataMsg *tsm, - CMConnection conn) -{ - STREAM_ASSERT_LOCKED(Stream); - if (tsm->Timestep < Stream->DiscardPriorTimestep) - { - struct _ReleaseTimestepMsg Msg; - memset(&Msg, 0, sizeof(Msg)); - Msg.Timestep = tsm->Timestep; - - /* - * send each writer rank a release for this timestep (actually goes to - * WSR Streams) - */ - if (tsm->Metadata != NULL) - { - CP_verbose(Stream, PerStepVerbose, - "Sending ReleaseTimestep message for PRIOR DISCARD " - "timestep %d, one to each writer\n", - tsm->Timestep); - sendOneToEachWriterRank( - Stream, Stream->CPInfo->SharedCM->ReleaseTimestepFormat, &Msg, - &Msg.WSR_Stream); - } - else - { - CP_verbose(Stream, PerStepVerbose, - "Received discard notice for timestep %d, " - "ignoring in PRIOR DISCARD\n", - tsm->Timestep); - } - } - - struct _TimestepMetadataList *New = malloc(sizeof(struct _RegisterQueue)); - New->MetadataMsg = tsm; - New->Next = NULL; - if (Stream->Timesteps) - { - struct _TimestepMetadataList *Last = Stream->Timesteps; - while (Last->Next) - { - Last = Last->Next; - } - Last->Next = New; - } - else - { - Stream->Timesteps = New; - } - Stream->Stats.TimestepMetadataReceived++; - if (tsm->Metadata) - { - Stream->Stats.MetadataBytesReceived += - (tsm->Metadata->DataSize + tsm->AttributeData->DataSize); - } - CP_verbose(Stream, PerRankVerbose, - "Received a Timestep metadata message for timestep %d, " - "signaling condition\n", - tsm->Timestep); - - STREAM_CONDITION_SIGNAL(Stream); - if ((Stream->Rank == 0) && - (Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && - (Stream->ConfigParams->AlwaysProvideLatestTimestep)) - { - /* - * IFF we are in CommMin mode, AND we are to always provide - * the newest timestep, then when a new timestep arrives then - * we want to release timesteps that are older than it, NOT - * INCLUDING ANY TIMESTEP IN CURRENT USE. - */ - CP_verbose(Stream, TraceVerbose, - "Got a new timestep in AlwaysProvideLatestTimestep mode, " - "discard older than %d\n", - tsm->Timestep); - releasePriorTimesteps(Stream, tsm->Timestep); - } -} - -struct _SstMetaMetaBlockInternal -{ - size_t TimestepAdded; - char *BlockData; - size_t BlockSize; - char *ID; - size_t IDSize; -}; - -void AddFormatsToMetaMetaInfo(SstStream Stream, - struct _TimestepMetadataMsg *Msg) -{ - FFSFormatList Formats = Msg->Formats; - STREAM_ASSERT_LOCKED(Stream); - while (Formats) - { - Stream->InternalMetaMetaInfo = - realloc(Stream->InternalMetaMetaInfo, - (sizeof(struct _SstMetaMetaBlockInternal) * - (Stream->InternalMetaMetaCount + 1))); - struct _SstMetaMetaBlockInternal *NewInfo = - &Stream->InternalMetaMetaInfo[Stream->InternalMetaMetaCount]; - Stream->InternalMetaMetaCount++; - NewInfo->TimestepAdded = Msg->Timestep; - NewInfo->ID = malloc(Formats->FormatIDRepLen); - NewInfo->IDSize = Formats->FormatIDRepLen; - NewInfo->BlockData = malloc(Formats->FormatServerRepLen); - NewInfo->BlockSize = Formats->FormatServerRepLen; - memcpy(NewInfo->ID, Formats->FormatIDRep, Formats->FormatIDRepLen); - memcpy(NewInfo->BlockData, Formats->FormatServerRep, - Formats->FormatServerRepLen); - Formats = Formats->Next; - } -} - -void AddAttributesToAttrDataList(SstStream Stream, - struct _TimestepMetadataMsg *Msg) -{ - if (Stream->AttrsRetrieved) - { - int i = 0; - while (Stream->InternalAttrDataInfo && - Stream->InternalAttrDataInfo[i].BlockData) - { - free(Stream->InternalAttrDataInfo[i].BlockData); - i++; - } - free(Stream->InternalAttrDataInfo); - Stream->InternalAttrDataInfo = NULL; - Stream->InternalAttrDataCount = 0; - Stream->AttrsRetrieved = 0; - } - if (Msg->AttributeData->DataSize == 0) - return; - - Stream->InternalAttrDataInfo = realloc( - Stream->InternalAttrDataInfo, - (sizeof(struct _SstBlock) * (Stream->InternalAttrDataCount + 2))); - struct _SstBlock *NewInfo = - &Stream->InternalAttrDataInfo[Stream->InternalAttrDataCount]; - Stream->InternalAttrDataCount++; - NewInfo->BlockData = malloc(Msg->AttributeData->DataSize); - NewInfo->BlockSize = Msg->AttributeData->DataSize; - memcpy(NewInfo->BlockData, Msg->AttributeData->block, - Msg->AttributeData->DataSize); - memset(&Stream->InternalAttrDataInfo[Stream->InternalAttrDataCount], 0, - sizeof(struct _SstData)); -} - -// CP_TimestepMetadataHandler is called by the network handler thread -// to handle incoming TimestepMetadata messages -void CP_TimestepMetadataHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) -{ - PERFSTUBS_TIMER_START_FUNC(timer); - SstStream Stream; - struct _TimestepMetadataMsg *Msg = (struct _TimestepMetadataMsg *)Msg_v; - Stream = (SstStream)Msg->RS_Stream; - STREAM_MUTEX_LOCK(Stream); - if ((Stream->Rank != 0) || - (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer)) - { - /* All ranks are getting this */ - if (Msg->Metadata == NULL) - { - CP_verbose( - Stream, PerRankVerbose, - "Received a message that timestep %d has been discarded\n", - Msg->Timestep); - - /* - * before discarding, install any precious metadata from this - * message - */ - if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) - { - FFSMarshalInstallPreciousMetadata(Stream, Msg); - } - else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) - { - AddFormatsToMetaMetaInfo(Stream, Msg); - AddAttributesToAttrDataList(Stream, Msg); - } - STREAM_MUTEX_UNLOCK(Stream); - - return; - } - else - { - CP_verbose( - Stream, PerStepVerbose, - "Received an incoming metadata message for timestep %d\n", - Msg->Timestep); - } - /* arrange for this message data to stay around */ - CMtake_buffer(cm, Msg); - - queueTimestepMetadataMsgAndNotify(Stream, Msg, conn); - } - else - { - /* I must be rank 0 and only I got this, I'll need to distribute it to - * everyone */ - /* arrange for this message data to stay around */ - CMtake_buffer(cm, Msg); - - queueTimestepMetadataMsgAndNotify(Stream, Msg, conn); - } - STREAM_MUTEX_UNLOCK(Stream); - PERFSTUBS_TIMER_STOP_FUNC(timer); -} - -// CP_WriterResponseHandler is called by the network handler thread to -// handle WriterResponse messages. One of these will be sent to rank0 -// reader from rank0 writer in response to the ReaderRegister message. -// It will find rank0 writer in CMCondition_wait(). It's only action -// is to associate the incoming response message to the CMcondition -// we're waiting on,m so no locking is necessary. -void CP_WriterResponseHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) -{ - PERFSTUBS_REGISTER_THREAD(); - PERFSTUBS_TIMER_START_FUNC(timer); - struct _WriterResponseMsg *Msg = (struct _WriterResponseMsg *)Msg_v; - struct _WriterResponseMsg **response_ptr; - // fprintf(stderr, "Received a writer_response message for condition - // %d\n", - // Msg->WriterResponseCondition); - // fprintf(stderr, "The responding writer has cohort of size %d :\n", - // Msg->writer_CohortSize); - // for (int i = 0; i < Msg->writer_CohortSize; i++) { - // fprintf(stderr, " rank %d CP contact info: %s, %p\n", i, - // Msg->CP_WriterInfo[i]->ContactInfo, - // Msg->CP_WriterInfo[i]->WriterID); - // } - - /* arrange for this message data to stay around */ - CMtake_buffer(cm, Msg); - - /* attach the message to the CMCondition so it an be retrieved by the main - * thread */ - response_ptr = - CMCondition_get_client_data(cm, Msg->WriterResponseCondition); - *response_ptr = Msg; - - /* wake the main thread */ - CMCondition_signal(cm, Msg->WriterResponseCondition); - PERFSTUBS_TIMER_STOP_FUNC(timer); -} - -// CP_DPQueryResponseHandler is called by the network handler thread to -// handle DPQueryResponse messages. One of these will be sent to rank0 -// reader from rank0 writer in response to the DPQuery message. -// It will find rank0 writer in CMCondition_wait(). It's only action -// is to associate the incoming response message to the CMcondition -// we're waiting on,m so no locking is necessary. -void CP_DPQueryResponseHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) -{ - PERFSTUBS_REGISTER_THREAD(); - PERFSTUBS_TIMER_START_FUNC(timer); - struct _DPQueryResponseMsg *Msg = (struct _DPQueryResponseMsg *)Msg_v; - char *NeededDP_ptr; - - // fprintf(stderr, "Received a writer_response message for condition - // %d\n", - // Msg->WriterResponseCondition); - // fprintf(stderr, "The responding writer has cohort of size %d :\n", - // Msg->writer_CohortSize); - // for (int i = 0; i < Msg->writer_CohortSize; i++) { - // fprintf(stderr, " rank %d CP contact info: %s, %p\n", i, - // Msg->CP_WriterInfo[i]->ContactInfo, - // Msg->CP_WriterInfo[i]->WriterID); - // } - - /* attach the message to the CMCondition so it an be retrieved by the main - * thread */ - NeededDP_ptr = - CMCondition_get_client_data(cm, Msg->WriterResponseCondition); - strcpy(NeededDP_ptr, Msg->OperativeDP); - - /* wake the main thread */ - CMCondition_signal(cm, Msg->WriterResponseCondition); - PERFSTUBS_TIMER_STOP_FUNC(timer); -} - -// CP_WriterCloseHandler is called by the network handler thread to -// handle WriterResponse messages. One of these will be sent to rank0 -// reader from rank0 writer in response to the ReaderRegister message. -// It will find rank0 writer in CMCondition_wait(). It's only action -// is to associate the incoming response message to the CMcondition -// we're waiting on, so no locking is necessary. -extern void CP_WriterCloseHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) -{ - PERFSTUBS_TIMER_START_FUNC(timer); - WriterCloseMsg Msg = (WriterCloseMsg)Msg_v; - SstStream Stream = (SstStream)Msg->RS_Stream; - - STREAM_MUTEX_LOCK(Stream); - CP_verbose(Stream, PerStepVerbose, - "Received a writer close message. " - "Timestep %d was the final timestep.\n", - Msg->FinalTimestep); - - Stream->FinalTimestep = Msg->FinalTimestep; - Stream->Status = PeerClosed; - /* wake anyone that might be waiting */ - STREAM_CONDITION_SIGNAL(Stream); - STREAM_MUTEX_UNLOCK(Stream); - PERFSTUBS_TIMER_STOP_FUNC(timer); -} - -// CP_CommPatternLockedHandler is called by the network handler thread -// to handle CommPatternLocked messages. It can only be called -// post-registration and won't be called after Close. Lock to protect -// against race conditions in determining comm lock scenario. -extern void CP_CommPatternLockedHandler(CManager cm, CMConnection conn, - void *Msg_v, void *client_data, - attr_list attrs) -{ - CommPatternLockedMsg Msg = (CommPatternLockedMsg)Msg_v; - SstStream Stream = (SstStream)Msg->RS_Stream; - - STREAM_MUTEX_LOCK(Stream); - CP_verbose( - Stream, PerStepVerbose, - "Received a CommPatternLocked message, beginning with Timestep %d.\n", - Msg->Timestep); - - Stream->CommPatternLocked = 1; - Stream->CommPatternLockedTimestep = Msg->Timestep; - STREAM_MUTEX_UNLOCK(Stream); -} - -static long MaxQueuedMetadata(SstStream Stream) -{ - struct _TimestepMetadataList *Next; - long MaxTimestep = -1; - STREAM_ASSERT_LOCKED(Stream); - Next = Stream->Timesteps; - if (Next == NULL) - { - CP_verbose(Stream, TraceVerbose, "MaxQueued Timestep returning -1\n"); - return -1; - } - while (Next) - { - if (Next->MetadataMsg->Timestep >= MaxTimestep) - { - MaxTimestep = Next->MetadataMsg->Timestep; - } - Next = Next->Next; - } - CP_verbose(Stream, TraceVerbose, "MaxQueued Timestep returning %ld\n", - MaxTimestep); - return MaxTimestep; -} - -static long NextQueuedMetadata(SstStream Stream) -{ - struct _TimestepMetadataList *Next; - long MinTimestep = LONG_MAX; - STREAM_ASSERT_LOCKED(Stream); - Next = Stream->Timesteps; - if (Next == NULL) - { - CP_verbose(Stream, TraceVerbose, "NextQueued Timestep returning -1\n"); - return -1; - } - while (Next) - { - if (Next->MetadataMsg->Timestep <= MinTimestep) - { - MinTimestep = Next->MetadataMsg->Timestep; - } - Next = Next->Next; - } - CP_verbose(Stream, TraceVerbose, "NextQueued Timestep returning %ld\n", - MinTimestep); - return MinTimestep; -} - -// A delayed task to wake the stream after a specific time period -static void triggerDataCondition(CManager cm, void *vStream) -{ - SstStream Stream = (SstStream)vStream; - - STREAM_MUTEX_LOCK(Stream); - /* wake the sleeping main thread for timeout */ - STREAM_CONDITION_SIGNAL(Stream); - STREAM_MUTEX_UNLOCK(Stream); -} - -static void waitForMetadataWithTimeout(SstStream Stream, float timeout_secs) -{ - struct _TimestepMetadataList *Next; - struct timeval start, now, end; - int timeout_int_sec = floor(timeout_secs); - int timeout_int_usec = ((timeout_secs - floorf(timeout_secs)) * 1000000); - CMTaskHandle TimeoutTask = NULL; - - STREAM_ASSERT_LOCKED(Stream); - gettimeofday(&start, NULL); - Next = Stream->Timesteps; - CP_verbose( - Stream, PerRankVerbose, - "Wait for metadata with timeout %g secs starting at time %ld.%06ld \n", - timeout_secs, start.tv_sec, start.tv_usec); - if (Next) - { - CP_verbose(Stream, PerRankVerbose, - "Returning from wait with timeout, NO TIMEOUT\n"); - } - end.tv_sec = start.tv_sec + timeout_int_sec; - end.tv_usec = start.tv_usec + timeout_int_usec; - if (end.tv_usec > 1000000) - { - end.tv_sec++; - end.tv_usec -= 1000000; - } - if (end.tv_sec < start.tv_sec) - { - // rollover - end.tv_sec = INT_MAX; - } - // special case - if (timeout_secs == 0.0) - { - CP_verbose( - Stream, PerRankVerbose, - "Returning from wait With no data after zero timeout poll\n"); - return; - } - - TimeoutTask = - CMadd_delayed_task(Stream->CPInfo->SharedCM->cm, timeout_int_sec, - timeout_int_usec, triggerDataCondition, Stream); - while (1) - { - Next = Stream->Timesteps; - if (Next) - { - CMremove_task(TimeoutTask); - CP_verbose(Stream, PerRankVerbose, - "Returning from wait with timeout, NO TIMEOUT\n"); - return; - } - if (Stream->Status != Established) - { - CP_verbose(Stream, PerRankVerbose, - "Returning from wait with timeout, STREAM NO " - "LONGER ESTABLISHED\n"); - return; - } - gettimeofday(&now, NULL); - CP_verbose(Stream, TraceVerbose, - "timercmp, now is %ld.%06ld end is %ld.%06ld \n", - now.tv_sec, now.tv_usec, end.tv_sec, end.tv_usec); - if (timercmp(&now, &end, >)) - { - CP_verbose(Stream, PerRankVerbose, - "Returning from wait after timing out\n"); - return; - } - /* wait until we get the timestep metadata or something else changes */ - STREAM_CONDITION_WAIT(Stream); - } - /* NOTREACHED */ -} - -static void releasePriorTimesteps(SstStream Stream, long Latest) -{ - struct _TimestepMetadataList *Next, *Last; - STREAM_ASSERT_LOCKED(Stream); - CP_verbose(Stream, PerRankVerbose, - "Releasing any timestep earlier than %d\n", Latest); - Next = Stream->Timesteps; - Last = NULL; - while (Next) - { - if ((Next->MetadataMsg->Timestep < Latest) && - (Next->MetadataMsg->Timestep != Stream->CurrentWorkingTimestep)) - { - struct _TimestepMetadataList *This = Next; - struct _ReleaseTimestepMsg Msg; - Next = This->Next; - - /* - * before discarding, install any precious metadata from this - * message - */ - if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) - { - FFSMarshalInstallPreciousMetadata(Stream, This->MetadataMsg); - } - else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) - { - AddFormatsToMetaMetaInfo(Stream, This->MetadataMsg); - AddAttributesToAttrDataList(Stream, This->MetadataMsg); - } - - memset(&Msg, 0, sizeof(Msg)); - Msg.Timestep = This->MetadataMsg->Timestep; - - /* - * send each writer rank a release for this timestep (actually goes - * to WSR - * Streams) - */ - CP_verbose(Stream, PerRankVerbose, - "Sending ReleaseTimestep message for RELEASE " - "PRIOR timestep %d, one to each writer\n", - This->MetadataMsg->Timestep); - - if (Last == NULL) - { - Stream->Timesteps = Next; - } - else - { - Last->Next = Next; - } - STREAM_MUTEX_UNLOCK(Stream); - sendOneToEachWriterRank( - Stream, Stream->CPInfo->SharedCM->ReleaseTimestepFormat, &Msg, - &Msg.WSR_Stream); - if (This->MetadataMsg == NULL) - printf("READER RETURN_BUFFER, metadatamsg == %p, line %d\n", - This->MetadataMsg, __LINE__); - CMreturn_buffer(Stream->CPInfo->SharedCM->cm, This->MetadataMsg); - STREAM_MUTEX_LOCK(Stream); - free(This); - } - else - { - Last = Next; - Next = Next->Next; - } - } -} - -static void FreeTimestep(SstStream Stream, long Timestep) -{ - /* - * remove local metadata for that timestep - */ - struct _TimestepMetadataList *List = Stream->Timesteps; - - STREAM_ASSERT_LOCKED(Stream); - if (Stream->Timesteps->MetadataMsg->Timestep == Timestep) - { - Stream->Timesteps = List->Next; - if (List->MetadataMsg == NULL) - printf("READER RETURN_BUFFER, List->MEtadataMsg == %p, line %d\n", - List->MetadataMsg, __LINE__); - CMreturn_buffer(Stream->CPInfo->SharedCM->cm, List->MetadataMsg); - - free(List); - } - else - { - struct _TimestepMetadataList *last = List; - List = List->Next; - while (List != NULL) - { - if (List->MetadataMsg->Timestep == Timestep) - { - last->Next = List->Next; - if (List->MetadataMsg == NULL) - printf("READER RETURN_BUFFER, List->MEtadataMsg == %p, " - "line %d\n", - List->MetadataMsg, __LINE__); - CMreturn_buffer(Stream->CPInfo->SharedCM->cm, - List->MetadataMsg); - - free(List); - break; - } - last = List; - List = List->Next; - } - } -} - -static TSMetadataList waitForNextMetadata(SstStream Stream, long LastTimestep) -{ - TSMetadataList FoundTS = NULL; - CP_verbose(Stream, PerRankVerbose, - "Wait for next metadata after last timestep %d\n", LastTimestep); - while (1) - { - struct _TimestepMetadataList *Next; - Next = Stream->Timesteps; - while (Next) - { - CP_verbose(Stream, TraceVerbose, - "Examining metadata for Timestep %d\n", - Next->MetadataMsg->Timestep); - if (((Next->MetadataMsg->Metadata == NULL) || - (Next->MetadataMsg->Timestep < - Stream->DiscardPriorTimestep)) && - (FoundTS == NULL)) - { - /* - * Either this is a dummy timestep for something that - * was discarded on the writer side, or it is a - * timestep that satisfies DiscardPriorTimestep and - * we've already sent a release for it. Now is the - * time to install the 'precious' info that it carried - * (Attributes and formats) and then discard it. - */ - CP_verbose(Stream, PerRankVerbose, - "SstAdvanceStep installing precious " - "metadata for discarded TS %d\n", - Next->MetadataMsg->Timestep); - if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) - { - FFSMarshalInstallPreciousMetadata(Stream, - Next->MetadataMsg); - } - else if (Stream->WriterConfigParams->MarshalMethod == - SstMarshalBP5) - { - AddFormatsToMetaMetaInfo(Stream, Next->MetadataMsg); - AddAttributesToAttrDataList(Stream, Next->MetadataMsg); - } - TSMetadataList Tmp = Next; - Next = Next->Next; - FreeTimestep(Stream, Tmp->MetadataMsg->Timestep); - continue; - } - if (Next->MetadataMsg->Timestep >= LastTimestep) - { - if ((FoundTS == NULL) && - (Next->MetadataMsg->Timestep > LastTimestep)) - { - FoundTS = Next; - break; - } - else if ((FoundTS != NULL) && (FoundTS->MetadataMsg->Timestep > - Next->MetadataMsg->Timestep)) - { - FoundTS = Next; - break; - } - } - Next = Next->Next; - } - if (FoundTS) - { - CP_verbose(Stream, PerRankVerbose, - "Returning metadata for Timestep %d\n", - FoundTS->MetadataMsg->Timestep); - Stream->CurrentWorkingTimestep = FoundTS->MetadataMsg->Timestep; - return FoundTS; - } - /* didn't find a good next timestep, check Stream status */ - if ((Stream->Status != Established) || - ((Stream->FinalTimestep != INT_MAX) && - (Stream->FinalTimestep >= LastTimestep))) - { - CP_verbose(Stream, TraceVerbose, - "Stream Final Timestep is %d, last timestep was %d\n", - Stream->FinalTimestep, LastTimestep); - if (Stream->Status == NotOpen) - { - CP_verbose(Stream, PerRankVerbose, - "Wait for next metadata returning NULL because " - "channel was never fully established\n"); - } - else if (Stream->Status == PeerFailed) - { - CP_verbose(Stream, PerRankVerbose, - "Wait for next metadata returning NULL because " - "the connection failed before final timestep " - "notification\n"); - } - else - { - CP_verbose(Stream, PerStepVerbose, - "Wait for next metadata returning NULL, status %d ", - Stream->Status); - } - /* closed or failed, return NULL */ - Stream->CurrentWorkingTimestep = -1; - return NULL; - } - CP_verbose(Stream, PerRankVerbose, - "Waiting for metadata for a Timestep later than TS %d\n", - LastTimestep); - CP_verbose(Stream, TraceVerbose, - "(PID %lx, TID %lx) Stream status is %s\n", (long)getpid(), - (long)gettid(), SSTStreamStatusStr[Stream->Status]); - /* wait until we get the timestep metadata or something else changes */ - STREAM_CONDITION_WAIT(Stream); - } - /* NOTREACHED */ -} - -// SstGetCurMetadata is an SST entry point only called by the main -// program thread. Only accesses the CurrentMetadata field which is -// touched only by other subroutines called by the main program -// thread, it needs no locking. -extern SstFullMetadata SstGetCurMetadata(SstStream Stream) -{ - return Stream->CurrentMetadata; -} - -extern SstMetaMetaList SstGetNewMetaMetaData(SstStream Stream, long Timestep) -{ - int RetCount = 0; - STREAM_MUTEX_LOCK(Stream); - int64_t LastRetTimestep = -1; - int i; - for (i = 0; i < Stream->InternalMetaMetaCount; i++) - { - if ((LastRetTimestep == -1) || - (Stream->InternalMetaMetaInfo[i].TimestepAdded >= LastRetTimestep)) - RetCount++; - } - if (RetCount == 0) - { - STREAM_MUTEX_UNLOCK(Stream); - return NULL; - } - SstMetaMetaList ret = malloc(sizeof(ret[0]) * (RetCount + 1)); - int j = 0; - for (i = 0; i < Stream->InternalMetaMetaCount; i++) - { - if ((LastRetTimestep == -1) || - (Stream->InternalMetaMetaInfo[i].TimestepAdded >= LastRetTimestep)) - { - // no copies, keep memory ownership in SST - ret[j].BlockData = Stream->InternalMetaMetaInfo[i].BlockData; - ret[j].BlockSize = Stream->InternalMetaMetaInfo[i].BlockSize; - ret[j].ID = Stream->InternalMetaMetaInfo[i].ID; - ret[j].IDSize = Stream->InternalMetaMetaInfo[i].IDSize; - j++; - } - } - memset(&ret[j], 0, sizeof(ret[j])); - LastRetTimestep = Timestep; - STREAM_MUTEX_UNLOCK(Stream); - return ret; -} - -extern SstBlock SstGetAttributeData(SstStream Stream, long Timestep) -{ - STREAM_MUTEX_LOCK(Stream); - struct _SstBlock *InternalAttrDataInfo = Stream->InternalAttrDataInfo; - Stream->AttrsRetrieved = 1; - STREAM_MUTEX_UNLOCK(Stream); - return InternalAttrDataInfo; -} - -static void AddToReadStats(SstStream Stream, int Rank, long Timestep, - size_t Length) -{ - if (!Stream->RanksRead) - Stream->RanksRead = calloc(1, Stream->WriterCohortSize); - Stream->RanksRead[Rank] = 1; - Stream->Stats.BytesRead += Length; -} - -#ifndef min -#define min(a, b) (((a) < (b)) ? (a) : (b)) -#endif - -static void ReleaseTSReadStats(SstStream Stream, long Timestep) -{ - int ThisFanIn = 0; - if (Stream->RanksRead) - { - for (int i = 0; i < Stream->WriterCohortSize; i++) - { - if (Stream->RanksRead[i]) - ThisFanIn++; - } - memset(Stream->RanksRead, 0, Stream->WriterCohortSize); - } - if (Stream->Stats.TimestepsConsumed == 1) - { - Stream->Stats.RunningFanIn = ThisFanIn; - } - else - { - Stream->Stats.RunningFanIn = - Stream->Stats.RunningFanIn + - ((double)ThisFanIn - Stream->Stats.RunningFanIn) / - min(Stream->Stats.TimestepsConsumed, 100); - } -} - -// SstReadRemotememory is only called by the main -// program thread. -extern void *SstReadRemoteMemory(SstStream Stream, int Rank, long Timestep, - size_t Offset, size_t Length, void *Buffer, - void *DP_TimestepInfo) -{ - if (Stream->ConfigParams->ReaderShortCircuitReads) - return NULL; - Stream->Stats.BytesTransferred += Length; - AddToReadStats(Stream, Rank, Timestep, Length); - return Stream->DP_Interface->readRemoteMemory( - &Svcs, Stream->DP_Stream, Rank, Timestep, Offset, Length, Buffer, - DP_TimestepInfo); -} - -static void sendOneToEachWriterRank(SstStream Stream, CMFormat f, void *Msg, - void **WS_StreamPtr) -{ - if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) - { - int i = 0; - while (Stream->Peers[i] != -1) - { - int peer = Stream->Peers[i]; - CMConnection conn = Stream->ConnectionsToWriter[peer].CMconn; - /* add the writer Stream identifier to each outgoing - * message */ - *WS_StreamPtr = Stream->ConnectionsToWriter[peer].RemoteStreamID; - if (CMwrite(conn, f, Msg) != 1) - { - switch (Stream->Status) - { - case NotOpen: - case Opening: - case Established: - CP_verbose(Stream, CriticalVerbose, - "Message failed to send to writer %d (%p)\n", - peer, *WS_StreamPtr); - break; - case PeerClosed: - case PeerFailed: - case Closed: - case Destroyed: - // Don't warn on send failures for closing/closed clients - break; - } - } - i++; - } - } - else - { - if (Stream->Rank == 0) - { - int peer = 0; - CMConnection conn = Stream->ConnectionsToWriter[peer].CMconn; - /* add the writer Stream identifier to each outgoing - * message */ - *WS_StreamPtr = Stream->ConnectionsToWriter[peer].RemoteStreamID; - if (CMwrite(conn, f, Msg) != 1) - { - switch (Stream->Status) - { - case NotOpen: - case Opening: - case Established: - CP_verbose(Stream, CriticalVerbose, - "Message failed to send to writer %d (%p)\n", - peer, *WS_StreamPtr); - break; - case PeerClosed: - case PeerFailed: - case Closed: - case Destroyed: - // Don't warn on send failures for closing/closed clients - break; - } - } - } - } -} - -// SstReaderDefinitionLock is only called by the main -// program thread. -extern void SstReaderDefinitionLock(SstStream Stream, long EffectiveTimestep) -{ - struct _LockReaderDefinitionsMsg Msg; - - memset(&Msg, 0, sizeof(Msg)); - Msg.Timestep = EffectiveTimestep; - - sendOneToEachWriterRank( - Stream, Stream->CPInfo->SharedCM->LockReaderDefinitionsFormat, &Msg, - &Msg.WSR_Stream); -} - -// SstReleaseStep is only called by the main program thread. It -// locks to protect the timestep list before freeing the local -// representation of the resleased timestep. -extern void SstReleaseStep(SstStream Stream) -{ - long Timestep = Stream->ReaderTimestep; - struct _ReleaseTimestepMsg Msg; - - PERFSTUBS_TIMER_START_FUNC(timer); - STREAM_MUTEX_LOCK(Stream); - if (Stream->DP_Interface->RSReleaseTimestep) - { - (Stream->DP_Interface->RSReleaseTimestep)(&Svcs, Stream->DP_Stream, - Timestep); - } - ReleaseTSReadStats(Stream, Timestep); - STREAM_MUTEX_UNLOCK(Stream); - - if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) || - (Stream->Rank == 0)) - { - STREAM_MUTEX_LOCK(Stream); - FreeTimestep(Stream, Timestep); - STREAM_MUTEX_UNLOCK(Stream); - } - - SMPI_Barrier(Stream->mpiComm); - - memset(&Msg, 0, sizeof(Msg)); - Msg.Timestep = Timestep; - - /* - * send each writer rank a release for this timestep (actually goes to WSR - * Streams) - */ - CP_verbose( - Stream, PerRankVerbose, - "Sending ReleaseTimestep message for timestep %d, one to each writer\n", - Timestep); - sendOneToEachWriterRank(Stream, - Stream->CPInfo->SharedCM->ReleaseTimestepFormat, - &Msg, &Msg.WSR_Stream); - - if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) - { - FFSClearTimestepData(Stream); - } - PERFSTUBS_TIMER_STOP_FUNC(timer); -} - -static void NotifyDPArrivedMetadata(SstStream Stream, - struct _TimestepMetadataMsg *MetadataMsg) -{ - if ((MetadataMsg->Metadata != NULL) && - (MetadataMsg->Timestep > Stream->LastDPNotifiedTimestep)) - { - if (Stream->DP_Interface->timestepArrived) - { - Stream->DP_Interface->timestepArrived(&Svcs, Stream->DP_Stream, - MetadataMsg->Timestep, - MetadataMsg->PreloadMode); - } - Stream->LastDPNotifiedTimestep = MetadataMsg->Timestep; - } -} - -/* - * wait for metadata for Timestep indicated to arrive, or fail with EndOfStream - * or Error - */ -static SstStatusValue SstAdvanceStepPeer(SstStream Stream, SstStepMode mode, - const float timeout_sec) -{ - - TSMetadataList Entry; - - PERFSTUBS_TIMER_START(timer, "Waiting on metadata per rank per timestep"); - - if ((timeout_sec >= 0.0) || (mode == SstLatestAvailable)) - { - struct _GlobalOpInfo - { - float timeout_sec; - int mode; - long LatestTimestep; - }; - struct _GlobalOpInfo my_info; - struct _GlobalOpInfo *global_info = NULL; - long NextTimestep; - - if (Stream->Rank == 0) - { - global_info = malloc(sizeof(my_info) * Stream->CohortSize); - CP_verbose(Stream, PerRankVerbose, - "In special case of advancestep, mode is %d, " - "Timeout Sec is %g, flt_max is %g\n", - mode, timeout_sec, FLT_MAX); - } - my_info.LatestTimestep = MaxQueuedMetadata(Stream); - my_info.timeout_sec = timeout_sec; - my_info.mode = mode; - SMPI_Gather(&my_info, sizeof(my_info), SMPI_CHAR, global_info, - sizeof(my_info), SMPI_CHAR, 0, Stream->mpiComm); - if (Stream->Rank == 0) - { - long Biggest = -1; - long Smallest = LONG_MAX; - for (int i = 0; i < Stream->CohortSize; i++) - { - if (global_info[i].LatestTimestep > Biggest) - { - Biggest = global_info[i].LatestTimestep; - } - if (global_info[i].LatestTimestep < Smallest) - { - Smallest = global_info[i].LatestTimestep; - } - } - - free(global_info); - - /* - * Several situations are possible here, depending upon - * whether or not a timeout is specified and/or - * LatestAvailable is specified, and whether or not we - * have timesteps queued anywhere. If they want - * LatestAvailable and we have any Timesteps queued - * anywhere, we decide upon a timestep to return and - * assume that all ranks will get it soon (or else we're - * in failure mode). If there are no timesteps queued - * anywhere, then we're going to wait for timeout seconds - * ON RANK 0. RANK 0 AND ONLY RANK 0 WILL DECIDE IF WE - * TIMEOUT OR RETURN WITH DATA. It is possible that other - * ranks get timestep metadata before the timeout expires, - * but we don't care. Whatever would happen on rank 0 is - * what happens everywhere. - */ - - if (Biggest == -1) - { - // AllQueuesEmpty - if (timeout_sec >= 0.0) - { - waitForMetadataWithTimeout(Stream, timeout_sec); - } - else - { - waitForMetadataWithTimeout(Stream, FLT_MAX); - } - NextTimestep = - MaxQueuedMetadata(Stream); /* might be -1 if we timed out */ - } - else - { - /* - * we've actually got a choice here. "Smallest" is - * the LatestTimestep that everyone has. "Biggest" is - * the Latest that someone has seen, and presumably - * others will see shortly. I'm going to go with Biggest - * until I have a reason to prefer one or the other. - */ - if (mode == SstLatestAvailable) - { - // latest available - CP_verbose(Stream, PerRankVerbose, - "Returning Biggest timestep available " - "%ld because LatestAvailable " - "specified\n", - Biggest); - NextTimestep = Biggest; - } - else - { - // next available (take the oldest that everyone has) - CP_verbose(Stream, PerRankVerbose, - "Returning Smallest timestep available " - "%ld because NextAvailable specified\n", - Smallest); - NextTimestep = Smallest; - } - } - if ((NextTimestep == -1) && (Stream->Status == PeerClosed)) - { - /* force everyone to close */ - NextTimestep = -2; - } - if ((NextTimestep == -1) && (Stream->Status == PeerFailed)) - { - /* force everyone to return failed */ - NextTimestep = -3; - } - SMPI_Bcast(&NextTimestep, 1, SMPI_LONG, 0, Stream->mpiComm); - } - else - { - STREAM_MUTEX_UNLOCK(Stream); - SMPI_Bcast(&NextTimestep, 1, SMPI_LONG, 0, Stream->mpiComm); - STREAM_MUTEX_LOCK(Stream); - } - if (NextTimestep == -2) - { - /* there was a peerClosed setting on rank0, we'll close */ - Stream->Status = PeerClosed; - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning EndOfStream at timestep %d\n", - Stream->ReaderTimestep); - return SstEndOfStream; - } - if (NextTimestep == -3) - { - /* there was a peerFailed setting on rank0, we'll fail */ - Stream->Status = PeerFailed; - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning EndOfStream at timestep %d\n", - Stream->ReaderTimestep); - STREAM_MUTEX_UNLOCK(Stream); - Stream->DP_Interface->notifyConnFailure(&Svcs, Stream->DP_Stream, - 0); - STREAM_MUTEX_LOCK(Stream); - return SstFatalError; - } - if (NextTimestep == -1) - { - CP_verbose(Stream, PerStepVerbose, - "AdvancestepPeer timing out on no data\n"); - return SstTimeout; - } - if (mode == SstLatestAvailable) - { - // latest available - /* release all timesteps from before NextTimestep, then fall - * through below */ - /* Side note: It is possible that someone could get a "prior" - * timestep after this point. It has to be released upon - * arrival */ - CP_verbose(Stream, PerStepVerbose, - "timed or Latest timestep, determined NextTimestep %d\n", - NextTimestep); - Stream->DiscardPriorTimestep = NextTimestep; - releasePriorTimesteps(Stream, NextTimestep); - } - } - - Entry = waitForNextMetadata(Stream, Stream->ReaderTimestep); - - PERFSTUBS_TIMER_STOP(timer); - - if (Entry) - { - NotifyDPArrivedMetadata(Stream, Entry->MetadataMsg); - - if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) - { - PERFSTUBS_TIMER_START(timerFFS, "FFS marshaling case"); - FFSMarshalInstallMetadata(Stream, Entry->MetadataMsg); - PERFSTUBS_TIMER_STOP(timerFFS); - } - else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) - { - AddFormatsToMetaMetaInfo(Stream, Entry->MetadataMsg); - AddAttributesToAttrDataList(Stream, Entry->MetadataMsg); - } - Stream->ReaderTimestep = Entry->MetadataMsg->Timestep; - SstFullMetadata Mdata = malloc(sizeof(struct _SstFullMetadata)); - memset(Mdata, 0, sizeof(struct _SstFullMetadata)); - Mdata->WriterCohortSize = Entry->MetadataMsg->CohortSize; - Mdata->WriterMetadata = - malloc(sizeof(Mdata->WriterMetadata[0]) * Mdata->WriterCohortSize); - for (int i = 0; i < Mdata->WriterCohortSize; i++) - { - Mdata->WriterMetadata[i] = &Entry->MetadataMsg->Metadata[i]; - } - if (Stream->DP_Interface->TimestepInfoFormats == NULL) - { - // DP didn't provide struct info, no valid data - Mdata->DP_TimestepInfo = NULL; - } - else - { - Mdata->DP_TimestepInfo = Entry->MetadataMsg->DP_TimestepInfo; - } - Stream->CurrentWorkingTimestep = Entry->MetadataMsg->Timestep; - Stream->CurrentMetadata = Mdata; - - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning Success on timestep %d\n", - Entry->MetadataMsg->Timestep); - return SstSuccess; - } - if (Stream->Status == PeerClosed) - { - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStepPeer returning EndOfStream at timestep %d\n", - Stream->ReaderTimestep); - return SstEndOfStream; - } - else - { - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning FatalError at timestep %d\n", - Stream->ReaderTimestep); - return SstFatalError; - } -} - -static SstStatusValue SstAdvanceStepMin(SstStream Stream, SstStepMode mode, - const float timeout_sec) -{ - TSMetadataDistributionMsg ReturnData; - struct _TimestepMetadataMsg *MetadataMsg; - SstStatusValue ret; - - void *free_block; - - if (Stream->Rank == 0) - { - struct _TimestepMetadataDistributionMsg msg; - SstStatusValue return_value = SstSuccess; - TSMetadataList RootEntry = NULL; - - memset(&msg, 0, sizeof(msg)); - msg.TSmsg = NULL; - msg.CommPatternLockedTimestep = -1; - if (Stream->CommPatternLocked == 1) - { - msg.CommPatternLockedTimestep = Stream->CommPatternLockedTimestep; - } - if ((timeout_sec >= 0.0) || (mode == SstLatestAvailable)) - { - long NextTimestep = -1; - long LatestTimestep = MaxQueuedMetadata(Stream); - /* - * Several situations are possible here, depending upon - * whether or not a timeout is specified and/or - * LatestAvailable is specified, and whether or not we - * have timesteps queued anywhere. If they want - * LatestAvailable and we have any Timesteps queued - * anywhere, we decide upon a timestep to return and - * assume that all ranks will get it soon (or else we're - * in failure mode). If there are no timesteps queued - * anywhere, then we're going to wait for timeout seconds - * ON RANK 0. RANK 0 AND ONLY RANK 0 WILL DECIDE IF WE - * TIMEOUT OR RETURN WITH DATA. It is possible that other - * ranks get timestep metadata before the timeout expires, - * but we don't care. Whatever would happen on rank 0 is - * what happens everywhere. - */ - - if (LatestTimestep == -1) - { - // AllQueuesEmpty - if (timeout_sec >= 0.0) - { - waitForMetadataWithTimeout(Stream, timeout_sec); - } - else - { - waitForMetadataWithTimeout(Stream, FLT_MAX); - } - NextTimestep = - MaxQueuedMetadata(Stream); /* might be -1 if we timed out */ - } - else - { - if (mode == SstLatestAvailable) - { - // latest available - CP_verbose(Stream, PerStepVerbose, - "Returning latest timestep available " - "%ld because LatestAvailable " - "specified\n", - LatestTimestep); - NextTimestep = LatestTimestep; - } - else - { - // next available (take the oldest that everyone has) - NextTimestep = NextQueuedMetadata(Stream); - CP_verbose(Stream, PerStepVerbose, - "Returning Smallest timestep available " - "%ld because NextAvailable specified\n", - NextTimestep); - } - } - if (Stream->Status == PeerFailed) - { - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStepMin returning FatalError because of " - "connection failure at timestep %d\n", - Stream->ReaderTimestep); - return_value = SstFatalError; - } - else if ((NextTimestep == -1) && (Stream->Status == PeerClosed)) - { - CP_verbose( - Stream, PerStepVerbose, - "SstAdvanceStepMin returning EndOfStream at timestep %d\n", - Stream->ReaderTimestep); - return_value = SstEndOfStream; - } - else if (NextTimestep == -1) - { - CP_verbose(Stream, PerStepVerbose, - "AdvancestepMin timing out on no data\n"); - return_value = SstTimeout; - } - else if (mode == SstLatestAvailable) - { - // latest available - /* release all timesteps from before NextTimestep, then fall - * through below */ - /* Side note: It is possible that someone could get a "prior" - * timestep after this point. It has to be released upon - * arrival */ - CP_verbose( - Stream, PerStepVerbose, - "timed or Latest timestep, determined NextTimestep %d\n", - NextTimestep); - Stream->DiscardPriorTimestep = NextTimestep; - releasePriorTimesteps(Stream, NextTimestep); - } - } - if (Stream->Status == PeerFailed) - { - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStepMin returning FatalError because of " - "conn failure at timestep %d\n", - Stream->ReaderTimestep); - return_value = SstFatalError; - } - if (return_value == SstSuccess) - { - RootEntry = waitForNextMetadata(Stream, Stream->ReaderTimestep); - } - if (RootEntry) - { - msg.TSmsg = RootEntry->MetadataMsg; - msg.ReturnValue = return_value; - CP_verbose(Stream, TraceVerbose, - "Setting TSmsg to Rootentry value\n"); - } - else - { - if (return_value == SstSuccess) - { - if (Stream->Status == PeerClosed) - { - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStepMin rank 0 returning " - "EndOfStream at timestep %d\n", - Stream->ReaderTimestep); - msg.ReturnValue = SstEndOfStream; - } - else - { - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStepMin rank 0 returning " - "FatalError at timestep %d\n", - Stream->ReaderTimestep); - msg.ReturnValue = SstFatalError; - } - CP_verbose(Stream, TraceVerbose, "Setting TSmsg to NULL\n"); - msg.TSmsg = NULL; - } - else - { - msg.ReturnValue = return_value; - } - } - // AddArrivedMetadataInfo(Stream, &msg); - ReturnData = CP_distributeDataFromRankZero( - Stream, &msg, Stream->CPInfo->TimestepDistributionFormat, - &free_block); - } - else - { - - STREAM_MUTEX_UNLOCK(Stream); - ReturnData = CP_distributeDataFromRankZero( - Stream, NULL, Stream->CPInfo->CombinedWriterInfoFormat, - &free_block); - STREAM_MUTEX_LOCK(Stream); - } - ret = (SstStatusValue)ReturnData->ReturnValue; - - if (ReturnData->ReturnValue != SstSuccess) - { - if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) && - (ReturnData->TSmsg)) - { - CP_verbose( - Stream, PerRankVerbose, - "SstAdvanceStep installing precious metadata before exiting\n"); - FFSMarshalInstallPreciousMetadata(Stream, ReturnData->TSmsg); - } - else if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) && - (ReturnData->TSmsg)) - { - AddFormatsToMetaMetaInfo(Stream, ReturnData->TSmsg); - AddAttributesToAttrDataList(Stream, ReturnData->TSmsg); - } - - free(free_block); - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning FAILURE\n"); - return ret; - } - MetadataMsg = ReturnData->TSmsg; - - if (ReturnData->CommPatternLockedTimestep != -1) - { - Stream->CommPatternLockedTimestep = - ReturnData->CommPatternLockedTimestep; - Stream->CommPatternLocked = 2; - STREAM_MUTEX_UNLOCK(Stream); - if (Stream->DP_Interface->RSreadPatternLocked) - { - Stream->DP_Interface->RSreadPatternLocked( - &Svcs, Stream->DP_Stream, Stream->CommPatternLockedTimestep); - } - STREAM_MUTEX_LOCK(Stream); - } - if (MetadataMsg) - { - NotifyDPArrivedMetadata(Stream, MetadataMsg); - - Stream->ReaderTimestep = MetadataMsg->Timestep; - if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) - { - CP_verbose(Stream, TraceVerbose, - "Calling install metadata from metadata block %p\n", - MetadataMsg); - FFSMarshalInstallMetadata(Stream, MetadataMsg); - } - else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) - { - AddFormatsToMetaMetaInfo(Stream, MetadataMsg); - AddAttributesToAttrDataList(Stream, MetadataMsg); - } - SstFullMetadata Mdata = malloc(sizeof(struct _SstFullMetadata)); - memset(Mdata, 0, sizeof(struct _SstFullMetadata)); - Mdata->WriterCohortSize = MetadataMsg->CohortSize; - Mdata->WriterMetadata = - malloc(sizeof(Mdata->WriterMetadata[0]) * Mdata->WriterCohortSize); - for (int i = 0; i < Mdata->WriterCohortSize; i++) - { - Mdata->WriterMetadata[i] = &MetadataMsg->Metadata[i]; - } - if (Stream->DP_Interface->TimestepInfoFormats == NULL) - { - // DP didn't provide struct info, no valid data - Mdata->DP_TimestepInfo = NULL; - } - else - { - Mdata->DP_TimestepInfo = MetadataMsg->DP_TimestepInfo; - } - Stream->CurrentWorkingTimestep = MetadataMsg->Timestep; - Mdata->FreeBlock = free_block; - Stream->CurrentMetadata = Mdata; - - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning Success on timestep %d\n", - MetadataMsg->Timestep); - return SstSuccess; - } - CP_verbose(Stream, TraceVerbose, "SstAdvanceStep final return\n"); - return ret; -} - -// SstAdvanceStep is only called by the main program thread. -extern SstStatusValue SstAdvanceStep(SstStream Stream, const float timeout_sec) -{ - - SstStatusValue result; - STREAM_MUTEX_LOCK(Stream); - if (Stream->CurrentMetadata != NULL) - { - if (Stream->CurrentMetadata->FreeBlock) - { - free(Stream->CurrentMetadata->FreeBlock); - } - if (Stream->CurrentMetadata->WriterMetadata) - { - free(Stream->CurrentMetadata->WriterMetadata); - } - free(Stream->CurrentMetadata); - Stream->CurrentMetadata = NULL; - } - - if (Stream->WriterConfigParams->StepDistributionMode == StepsOnDemand) - { - struct _ReaderRequestStepMsg Msg; - CP_verbose(Stream, PerRankVerbose, - "Sending Reader Request Step messages to writer\n"); - memset(&Msg, 0, sizeof(Msg)); - sendOneToEachWriterRank( - Stream, Stream->CPInfo->SharedCM->ReaderRequestStepFormat, &Msg, - &Msg.WSR_Stream); - } - - SstStepMode mode = SstNextAvailable; - if (Stream->ConfigParams->AlwaysProvideLatestTimestep) - { - mode = SstLatestAvailable; - } - if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) - { - result = SstAdvanceStepPeer(Stream, mode, timeout_sec); - } - else - { - result = SstAdvanceStepMin(Stream, mode, timeout_sec); - } - if (result == SstSuccess) - { - Stream->Stats.TimestepsConsumed++; - } - STREAM_MUTEX_UNLOCK(Stream); - return result; -} - -// SstReaderClose is only called by the main program thread and -// needs no locking as it only accesses data set by the main thread -extern void SstReaderClose(SstStream Stream) -{ - /* need to have a reader-side shutdown protocol, but for now, just sleep for - * a little while to makes sure our release message for the last timestep - * got received */ - struct timeval CloseTime, Diff; - struct _ReaderCloseMsg Msg; - /* wait until each reader rank has done SstReaderClose() */ - SMPI_Barrier(Stream->mpiComm); - gettimeofday(&CloseTime, NULL); - timersub(&CloseTime, &Stream->ValidStartTime, &Diff); - memset(&Msg, 0, sizeof(Msg)); - sendOneToEachWriterRank(Stream, Stream->CPInfo->SharedCM->ReaderCloseFormat, - &Msg, &Msg.WSR_Stream); - Stream->Stats.StreamValidTimeSecs = - (double)Diff.tv_usec / 1e6 + Diff.tv_sec; - - if (Stream->CPVerbosityLevel >= (int)SummaryVerbose) - { - DoStreamSummary(Stream); - } - CMusleep(Stream->CPInfo->SharedCM->cm, 100000); - if (Stream->CurrentMetadata != NULL) - { - if (Stream->CurrentMetadata->FreeBlock) - free(Stream->CurrentMetadata->FreeBlock); - if (Stream->CurrentMetadata->WriterMetadata) - free(Stream->CurrentMetadata->WriterMetadata); - free(Stream->CurrentMetadata); - Stream->CurrentMetadata = NULL; - } - STREAM_MUTEX_LOCK(Stream); - for (int i = 0; i < Stream->InternalMetaMetaCount; i++) - { - free(Stream->InternalMetaMetaInfo[i].ID); - free(Stream->InternalMetaMetaInfo[i].BlockData); - } - free(Stream->InternalMetaMetaInfo); - if (Stream->InternalAttrDataInfo) - { - for (int i = 0; i < Stream->InternalAttrDataCount; i++) - { - free(Stream->InternalAttrDataInfo[i].BlockData); - } - free(Stream->InternalAttrDataInfo); - } - STREAM_MUTEX_UNLOCK(Stream); -} - -// SstWaitForCompletion is only called by the main program thread and -// needs no locking -extern SstStatusValue SstWaitForCompletion(SstStream Stream, void *handle) -{ - if (Stream->ConfigParams->ReaderShortCircuitReads) - return SstSuccess; - if (Stream->DP_Interface->waitForCompletion(&Svcs, handle) != 1) - { - return SstFatalError; - } - else - { - return SstSuccess; - } -} +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +#include "adios2/common/ADIOSConfig.h" +#include +#include +#include + +#include "sst.h" + +#include "cp_internal.h" +#include + +#define gettid() pthread_self() +#ifdef MUTEX_DEBUG +#define STREAM_MUTEX_LOCK(Stream) \ + { \ + fprintf(stderr, "(PID %lx, TID %lx) CP_READER Trying lock line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + pthread_mutex_lock(&Stream->DataLock); \ + Stream->Locked++; \ + fprintf(stderr, "(PID %lx, TID %lx) CP_READER Got lock\n", \ + (long)getpid(), (long)gettid()); \ + } + +#define STREAM_MUTEX_UNLOCK(Stream) \ + { \ + fprintf(stderr, "(PID %lx, TID %lx) CP_READER UNlocking line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + Stream->Locked--; \ + pthread_mutex_unlock(&Stream->DataLock); \ + } +#define STREAM_CONDITION_WAIT(Stream) \ + { \ + fprintf( \ + stderr, \ + "(PID %lx, TID %lx) CP_READER Dropping Condition Lock line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + Stream->Locked = 0; \ + pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ + fprintf( \ + stderr, \ + "(PID %lx, TID %lx) CP_READER Acquired Condition Lock line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + Stream->Locked = 1; \ + } +#define STREAM_CONDITION_SIGNAL(Stream) \ + { \ + assert(Stream->Locked == 1); \ + fprintf(stderr, \ + "(PID %lx, TID %lx) CP_READER Signalling Condition line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + pthread_cond_signal(&Stream->DataCondition); \ + } + +#define STREAM_ASSERT_LOCKED(Stream) \ + { \ + assert(Stream->Locked == 1); \ + } +#else +#define STREAM_MUTEX_LOCK(Stream) \ + { \ + pthread_mutex_lock(&Stream->DataLock); \ + } +#define STREAM_MUTEX_UNLOCK(Stream) \ + { \ + pthread_mutex_unlock(&Stream->DataLock); \ + } +#define STREAM_CONDITION_WAIT(Stream) \ + { \ + pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ + } +#define STREAM_CONDITION_SIGNAL(Stream) \ + { \ + pthread_cond_signal(&Stream->DataCondition); \ + } +#define STREAM_ASSERT_LOCKED(Stream) +#endif + +static char *readContactInfoFile(const char *Name, SstStream Stream, + int Timeout) +{ + size_t len = strlen(Name) + strlen(SST_POSTFIX) + 1; + char *FileName = malloc(len); + int Badfile = 0; + int ZeroCount = 0; + FILE *WriterInfo; + int64_t TimeoutRemainingMsec = Timeout * 1000; + int64_t WaitWarningRemainingMsec = 5 * 1000; + long SleepInterval = 100000; + snprintf(FileName, len, "%s" SST_POSTFIX, Name); + CP_verbose(Stream, PerRankVerbose, + "Looking for writer contact in file %s, with timeout %d secs\n", + FileName, Timeout); +redo: + WriterInfo = fopen(FileName, "r"); + while (!WriterInfo) + { + // CMusleep(Stream->CPInfo->cm, SleepInterval); + usleep(SleepInterval); + TimeoutRemainingMsec -= (SleepInterval / 1000); + WaitWarningRemainingMsec -= (SleepInterval / 1000); + if (WaitWarningRemainingMsec == 0) + { + fprintf(stderr, + "ADIOS2 SST Engine waiting for contact information " + "file %s to be created\n", + Name); + } + if (TimeoutRemainingMsec <= 0) + { + free(FileName); + return NULL; + } + WriterInfo = fopen(FileName, "r"); + } + struct stat Buf; + fstat(fileno(WriterInfo), &Buf); + int Size = Buf.st_size; + if (Size == 0) + { + // Try again, it might look zero momentarily, but shouldn't stay that + // way. + ZeroCount++; + if (ZeroCount < 5) + { + // We'll give it several attempts (and some time) to go non-zero + usleep(SleepInterval); + goto redo; + } + } + + if (Size < strlen(SSTMAGICV0)) + { + Badfile++; + } + else + { + char Tmp[strlen(SSTMAGICV0)]; + if (fread(Tmp, strlen(SSTMAGICV0), 1, WriterInfo) != 1) + { + fprintf(stderr, + "Filesystem read failed in SST Open, failing operation\n"); + fclose(WriterInfo); + Badfile++; + } + Size -= strlen(SSTMAGICV0); + if (strncmp(Tmp, SSTMAGICV0, strlen(SSTMAGICV0)) != 0) + { + Badfile++; + } + } + if (Badfile) + { + fprintf(stderr, + "!!! File %s is not an ADIOS2 SST Engine Contact file\n", + FileName); + free(FileName); + fclose(WriterInfo); + return NULL; + } + free(FileName); + char *Buffer = calloc(1, Size + 1); + if (fread(Buffer, Size, 1, WriterInfo) != 1) + { + fprintf(stderr, + "Filesystem read failed in SST Open, failing operation\n"); + free(Buffer); + fclose(WriterInfo); + return NULL; + } + fclose(WriterInfo); + return Buffer; +} + +static char *readContactInfoScreen(const char *Name, SstStream Stream) +{ + char Input[10240]; + char *Skip = Input; + fprintf(stdout, + "Please enter the contact information associated with SST " + "input stream \"%s\":\n", + Name); + if (fgets(Input, sizeof(Input), stdin) == NULL) + { + fprintf(stdout, "Read from stdin failed, exiting\n"); + exit(1); + } + while (isspace(*Skip)) + Skip++; + return strdup(Skip); +} + +static char *readContactInfo(const char *Name, SstStream Stream, int Timeout) +{ + switch (Stream->RegistrationMethod) + { + case SstRegisterFile: + return readContactInfoFile(Name, Stream, Timeout); + case SstRegisterScreen: + return readContactInfoScreen(Name, Stream); + case SstRegisterCloud: + /* not yet */ + return NULL; + } + return NULL; +} + +// ReaderConnCloseHandler is called by the network handler thread in +// response to the failure of a network connection to the writer. +extern void ReaderConnCloseHandler(CManager cm, CMConnection ClosedConn, + void *client_data) +{ + PERFSTUBS_TIMER_START_FUNC(timer); + SstStream Stream = (SstStream)client_data; + int FailedPeerRank = -1; + STREAM_MUTEX_LOCK(Stream); + CP_verbose(Stream, PerRankVerbose, "Reader-side close handler invoked\n"); + if ((Stream->Status == Destroyed) || (!Stream->ConnectionsToWriter)) + { + STREAM_MUTEX_UNLOCK(Stream); + return; + } + for (int i = 0; i < Stream->WriterCohortSize; i++) + { + if (Stream->ConnectionsToWriter[i].CMconn == ClosedConn) + { + FailedPeerRank = i; + } + } + + if (Stream->Status == Established) + { + if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && + (Stream->Rank != 0)) + { + CP_verbose(Stream, PerRankVerbose, + "Reader-side Rank received a " + "connection-close event during normal " + "operations, but might be part of shutdown " + "Don't change stream status.\n"); + /* if this happens and *is* a failure, we'll get the status from + * rank 0 later */ + } + else + { + /* + * tag our reader instance as failed, IFF this came from someone we + * should have gotten a CLOSE from. I.E. a reverse peer + */ + CP_verbose(Stream, PerRankVerbose, + "Reader-side Rank received a " + "connection-close event during normal " + "operations, peer likely failed\n"); + if (FailedPeerRank == Stream->FailureContactRank) + { + Stream->Status = PeerFailed; + STREAM_CONDITION_SIGNAL(Stream); + } + } + CP_verbose( + Stream, PerRankVerbose, + "The close was for connection to writer peer %d, notifying DP\n", + FailedPeerRank); + STREAM_MUTEX_UNLOCK(Stream); + /* notify DP of failure. This should terminate any waits currently + * pending in the DP for that rank */ + Stream->DP_Interface->notifyConnFailure(&Svcs, Stream->DP_Stream, + FailedPeerRank); + } + else if (Stream->Status == PeerClosed) + { + /* ignore this. We expect a close after the connection is marked closed + */ + CP_verbose(Stream, PerRankVerbose, + "Reader-side Rank received a " + "connection-close event after close, " + "not unexpected\n"); + STREAM_MUTEX_UNLOCK(Stream); + // Don't notify DP, because this is part of normal shutdown and we don't + // want to kill pending reads + } + else if (Stream->Status == PeerFailed) + { + CP_verbose( + Stream, PerRankVerbose, + "Reader-side Rank received a " + "connection-close event after PeerFailed, already notified DP \n"); + // Don't notify DP, because we already have */ + STREAM_MUTEX_UNLOCK(Stream); + } + else + { + CP_verbose(Stream, CriticalVerbose, + "Got an unexpected connection close event\n"); + CP_verbose(Stream, PerStepVerbose, + "Reader-side Rank received a " + "connection-close event in unexpected " + "status %s\n", + SSTStreamStatusStr[Stream->Status]); + STREAM_MUTEX_UNLOCK(Stream); + } + PERFSTUBS_TIMER_STOP_FUNC(timer); +} + +// SstCurrentStep is only called by the main program thread and +// needs no locking as it only accesses data set by the main thread +extern long SstCurrentStep(SstStream Stream) { return Stream->ReaderTimestep; } + +static void releasePriorTimesteps(SstStream Stream, long Latest); +static void sendOneToEachWriterRank(SstStream s, CMFormat f, void *Msg, + void **WS_StreamPtr); + +static void **ParticipateInReaderInitDataExchange(SstStream Stream, + void *dpInfo, + void **ret_data_block) +{ + + struct _CP_DP_PairInfo combined_init; + struct _CP_ReaderInitInfo cpInfo; + + struct _CP_DP_PairInfo **pointers; + + cpInfo.ContactInfo = CP_GetContactString(Stream, NULL); + cpInfo.ReaderID = Stream; + + combined_init.CP_Info = (void **)&cpInfo; + combined_init.DP_Info = dpInfo; + + pointers = (struct _CP_DP_PairInfo **)CP_consolidateDataToRankZero( + Stream, &combined_init, Stream->CPInfo->PerRankReaderInfoFormat, + ret_data_block); + free(cpInfo.ContactInfo); + return (void **)pointers; +} + +static int HasAllPeers(SstStream Stream) +{ + int i, StillWaiting = 0; + if (!Stream->ConnectionsToWriter) + { + CP_verbose(Stream, PerRankVerbose, + "(PID %lx, TID %lx) Waiting for first Peer notification\n", + (long)gettid(), (long)getpid()); + return 0; + } + i = 0; + while (Stream->Peers[i] != -1) + { + int peer = Stream->Peers[i]; + if (Stream->ConnectionsToWriter[peer].CMconn == NULL) + StillWaiting++; + i++; + } + if (StillWaiting == 0) + { + CP_verbose(Stream, PerRankVerbose, + "Rank %d has all forward peer connections\n", Stream->Rank); + return 1; + } + else + { + CP_verbose(Stream, PerRankVerbose, + "Rank %d waiting for %d forward peer connections\n", + Stream->Rank, StillWaiting); + return 0; + } +} + +attr_list ContactWriter(SstStream Stream, char *Filename, SstParams Params, + SMPI_Comm comm, CMConnection *conn_p, + void **WriterFileID_p) +{ + int DataSize = 0; + attr_list RetVal = NULL; + + if (Stream->Rank == 0) + { + char *Writer0Contact = + readContactInfo(Filename, Stream, Params->OpenTimeoutSecs); + char *CMContactString = NULL; + CMConnection conn = NULL; + attr_list WriterRank0Contact; + + if (Writer0Contact) + { + + CMContactString = + malloc(strlen(Writer0Contact)); /* at least long enough */ + sscanf(Writer0Contact, "%p:%s", WriterFileID_p, CMContactString); + // printf("Writer contact info is fileID %p, contact info + // %s\n", + // WriterFileID, CMContactString); + free(Writer0Contact); + + if (globalNetinfoCallback) + { + (globalNetinfoCallback)(1, CP_GetContactString(Stream, NULL), + IPDiagString); + (globalNetinfoCallback)(2, CMContactString, NULL); + } + WriterRank0Contact = attr_list_from_string(CMContactString); + conn = CMget_conn(Stream->CPInfo->SharedCM->cm, WriterRank0Contact); + free_attr_list(WriterRank0Contact); + } + if (conn) + { + DataSize = strlen(CMContactString) + 1; + *conn_p = conn; + } + else + { + DataSize = 0; + *conn_p = NULL; + } + SMPI_Bcast(&DataSize, 1, SMPI_INT, 0, Stream->mpiComm); + if (DataSize != 0) + { + SMPI_Bcast(CMContactString, DataSize, SMPI_CHAR, 0, + Stream->mpiComm); + RetVal = attr_list_from_string(CMContactString); + } + if (CMContactString) + free(CMContactString); + } + else + { + SMPI_Bcast(&DataSize, 1, SMPI_INT, 0, Stream->mpiComm); + if (DataSize != 0) + { + char *Buffer = malloc(DataSize); + SMPI_Bcast(Buffer, DataSize, SMPI_CHAR, 0, Stream->mpiComm); + RetVal = attr_list_from_string(Buffer); + free(Buffer); + } + } + return RetVal; +} + +// SstReaderOpen is an SST reader entry point, called only by the +// main program thread It must be called by all ranks, and as it +// creates the only shared data structure, no locking is necessary +// prior to the CMCondition_wait() that is triggered in response to +// reader regsitration. +SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) +{ + SstStream Stream; + void *dpInfo; + struct _CP_DP_PairInfo **pointers; + void *data_block; + void *free_block; + writer_data_t ReturnData; + struct _ReaderActivateMsg Msg; + struct timeval Start, Stop, Diff; + char *Filename = strdup(Name); + CMConnection rank0_to_rank0_conn = NULL; + void *WriterFileID; + char NeededDataPlane[32] = { + 0}; // Don't name a data plane longer than 31 chars + + Stream = CP_newStream(); + Stream->Role = ReaderRole; + Stream->mpiComm = comm; + + SMPI_Comm_rank(Stream->mpiComm, &Stream->Rank); + SMPI_Comm_size(Stream->mpiComm, &Stream->CohortSize); + + CP_validateParams(Stream, Params, 0 /* reader */); + Stream->ConfigParams = Params; + + Stream->CPInfo = CP_getCPInfo(Stream->ConfigParams->ControlModule); + + Stream->FinalTimestep = INT_MAX; /* set this on close */ + Stream->LastDPNotifiedTimestep = -1; + + gettimeofday(&Start, NULL); + + attr_list WriterContactAttributes = ContactWriter( + Stream, Filename, Params, comm, &rank0_to_rank0_conn, &WriterFileID); + + if (WriterContactAttributes == NULL) + { + SstStreamDestroy(Stream); + free(Stream); + free(Filename); + return NULL; + } + + if (Stream->Rank == 0) + { + struct _DPQueryMsg DPQuery; + memset(&DPQuery, 0, sizeof(DPQuery)); + + DPQuery.WriterFile = WriterFileID; + DPQuery.WriterResponseCondition = + CMCondition_get(Stream->CPInfo->SharedCM->cm, rank0_to_rank0_conn); + + CMCondition_set_client_data(Stream->CPInfo->SharedCM->cm, + DPQuery.WriterResponseCondition, + &NeededDataPlane[0]); + + if (CMwrite(rank0_to_rank0_conn, + Stream->CPInfo->SharedCM->DPQueryFormat, &DPQuery) != 1) + { + CP_verbose( + Stream, CriticalVerbose, + "DPQuery message failed to send to writer in SstReaderOpen\n"); + } + + /* wait for "go" from writer */ + CP_verbose( + Stream, PerRankVerbose, + "Waiting for writer DPResponse message in SstReadOpen(\"%s\")\n", + Filename, DPQuery.WriterResponseCondition); + int result = CMCondition_wait(Stream->CPInfo->SharedCM->cm, + DPQuery.WriterResponseCondition); + if (result == 0) + { + fprintf(stderr, "The writer exited before contact could be made, " + "SST Open failed.\n"); + return NULL; + } + CP_verbose(Stream, PerRankVerbose, + "finished wait writer DPresponse message in read_open, " + "WRITER is using \"%s\" DataPlane\n", + &NeededDataPlane[0]); + + // NeededDP should now contain the name of the dataplane the writer is + // using + SMPI_Bcast(&NeededDataPlane[0], sizeof(NeededDataPlane), SMPI_CHAR, 0, + Stream->mpiComm); + } + else + { + SMPI_Bcast(&NeededDataPlane[0], sizeof(NeededDataPlane), SMPI_CHAR, 0, + Stream->mpiComm); + } + { + char *RequestedDP = Stream->ConfigParams->DataTransport; + Stream->ConfigParams->DataTransport = strdup(&NeededDataPlane[0]); + Stream->DP_Interface = + SelectDP(&Svcs, Stream, Stream->ConfigParams, Stream->Rank); + if (Stream->DP_Interface) + if (strcmp(Stream->DP_Interface->DPName, &NeededDataPlane[0]) != 0) + { + fprintf(stderr, + "The writer is using the %s DataPlane for SST data " + "transport, but the reader has failed to load this " + "transport. Communication cannot occur. See the SST " + "DataTransport engine parameter to force a match.", + NeededDataPlane); + return NULL; + } + if (RequestedDP) + free(RequestedDP); + } + + FinalizeCPInfo(Stream->CPInfo, Stream->DP_Interface); + + Stream->DP_Stream = Stream->DP_Interface->initReader( + &Svcs, Stream, &dpInfo, Stream->ConfigParams, WriterContactAttributes, + &Stream->Stats); + + free_attr_list(WriterContactAttributes); + + pointers = (struct _CP_DP_PairInfo **)ParticipateInReaderInitDataExchange( + Stream, dpInfo, &data_block); + + if (Stream->Rank == 0) + { + struct _CombinedWriterInfo WriterData; + struct _ReaderRegisterMsg ReaderRegister; + + memset(&ReaderRegister, 0, sizeof(ReaderRegister)); + memset(&WriterData, 0, sizeof(WriterData)); + WriterData.WriterCohortSize = -1; + ReaderRegister.WriterFile = WriterFileID; + ReaderRegister.WriterResponseCondition = + CMCondition_get(Stream->CPInfo->SharedCM->cm, rank0_to_rank0_conn); + ReaderRegister.ReaderCohortSize = Stream->CohortSize; + switch (Stream->ConfigParams->SpeculativePreloadMode) + { + case SpecPreloadOff: + case SpecPreloadOn: + ReaderRegister.SpecPreload = + (SpeculativePreloadMode) + Stream->ConfigParams->SpeculativePreloadMode; + break; + case SpecPreloadAuto: + ReaderRegister.SpecPreload = SpecPreloadOff; + if (Stream->CohortSize <= + Stream->ConfigParams->SpecAutoNodeThreshold) + { + ReaderRegister.SpecPreload = SpecPreloadOn; + } + break; + } + + ReaderRegister.CP_ReaderInfo = + malloc(ReaderRegister.ReaderCohortSize * sizeof(void *)); + ReaderRegister.DP_ReaderInfo = + malloc(ReaderRegister.ReaderCohortSize * sizeof(void *)); + for (int i = 0; i < ReaderRegister.ReaderCohortSize; i++) + { + ReaderRegister.CP_ReaderInfo[i] = + (CP_ReaderInitInfo)pointers[i]->CP_Info; + ReaderRegister.DP_ReaderInfo[i] = pointers[i]->DP_Info; + } + free(pointers); + + /* the response value is set in the handler */ + volatile struct _WriterResponseMsg *response = NULL; + CMCondition_set_client_data(Stream->CPInfo->SharedCM->cm, + ReaderRegister.WriterResponseCondition, + &response); + + if (CMwrite(rank0_to_rank0_conn, + Stream->CPInfo->SharedCM->ReaderRegisterFormat, + &ReaderRegister) != 1) + { + CP_verbose(Stream, CriticalVerbose, + "Message failed to send to writer in SstReaderOpen\n"); + } + free(ReaderRegister.CP_ReaderInfo); + free(ReaderRegister.DP_ReaderInfo); + + /* wait for "go" from writer */ + CP_verbose( + Stream, PerRankVerbose, + "Waiting for writer response message in SstReadOpen(\"%s\")\n", + Filename, ReaderRegister.WriterResponseCondition); + int result = CMCondition_wait(Stream->CPInfo->SharedCM->cm, + ReaderRegister.WriterResponseCondition); + if (result == 0) + { + fprintf(stderr, "The writer exited before the SST Reader Open " + "could be completed.\n"); + return NULL; + } + CP_verbose(Stream, PerRankVerbose, + "finished wait writer response message in read_open\n"); + + if (response) + { + WriterData.WriterCohortSize = response->WriterCohortSize; + WriterData.WriterConfigParams = response->WriterConfigParams; + WriterData.StartingStepNumber = response->NextStepNumber; + WriterData.CP_WriterInfo = response->CP_WriterInfo; + WriterData.DP_WriterInfo = response->DP_WriterInfo; + } + ReturnData = CP_distributeDataFromRankZero( + Stream, &WriterData, Stream->CPInfo->CombinedWriterInfoFormat, + &free_block); + } + else + { + ReturnData = CP_distributeDataFromRankZero( + Stream, NULL, Stream->CPInfo->CombinedWriterInfoFormat, + &free_block); + } + + free(data_block); + + if (ReturnData->WriterCohortSize == -1) + { + /* Rank 0 found no writer at that contact point, fail the stream */ + free(free_block); + return NULL; + } + + if (Stream->Rank == 0) + { + CP_verbose(Stream, SummaryVerbose, + "Opening Reader Stream.\nWriter stream params are:\n"); + CP_dumpParams(Stream, ReturnData->WriterConfigParams, + 0 /* writer side */); + CP_verbose(Stream, SummaryVerbose, "Reader stream params are:\n"); + CP_dumpParams(Stream, Stream->ConfigParams, 1 /* reader side */); + } + + // printf("I am reader rank %d, my info on writers is:\n", Stream->Rank); + // FMdump_data(FMFormat_of_original(Stream->CPInfo->combined_writer_Format), + // ReturnData, 1024000); + // printf("\n"); + + Stream->WriterCohortSize = ReturnData->WriterCohortSize; + Stream->WriterConfigParams = ReturnData->WriterConfigParams; + if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) && + (Stream->Rank == 0)) + { + CP_verbose(Stream, SummaryVerbose, + "Writer is doing FFS-based marshalling\n"); + } + if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalBP) && + (Stream->Rank == 0)) + { + CP_verbose(Stream, SummaryVerbose, + "Writer is doing BP-based marshalling\n"); + } + if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && + (Stream->Rank == 0)) + { + CP_verbose( + Stream, SummaryVerbose, + "Writer is using Minimum Connection Communication pattern (min)\n"); + } + if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) && + (Stream->Rank == 0)) + { + CP_verbose(Stream, SummaryVerbose, + "Writer is using Peer-based Communication pattern (peer)\n"); + } + STREAM_MUTEX_LOCK(Stream); + Stream->ReaderTimestep = ReturnData->StartingStepNumber - 1; + + if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) + { + /* + * Wait for connections and messages from writer side peers + */ + getPeerArrays(Stream->CohortSize, Stream->Rank, + Stream->WriterCohortSize, &Stream->Peers, NULL); + + while (!HasAllPeers(Stream)) + { + /* wait until we get the timestep metadata or something else changes + */ + STREAM_CONDITION_WAIT(Stream); + } + } + else + { + if (!Stream->ConnectionsToWriter) + { + Stream->ConnectionsToWriter = + calloc(sizeof(CP_PeerConnection), ReturnData->WriterCohortSize); + } + } + + for (int i = 0; i < ReturnData->WriterCohortSize; i++) + { + attr_list attrs = + attr_list_from_string(ReturnData->CP_WriterInfo[i]->ContactInfo); + Stream->ConnectionsToWriter[i].ContactList = attrs; + Stream->ConnectionsToWriter[i].RemoteStreamID = + ReturnData->CP_WriterInfo[i]->WriterID; + } + + // Deref the original connection to writer rank 0 (might still be open as a + // peer) + if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) + { + if (rank0_to_rank0_conn) + { + CMConnection_dereference(rank0_to_rank0_conn); + } + } + else + { + /* only rely on the rank 0 to rank 0 that we already have (if we're rank + * 0) */ + if (rank0_to_rank0_conn) + { + CMConnection conn = rank0_to_rank0_conn; + Stream->ConnectionsToWriter[0].CMconn = conn; + CMconn_register_close_handler(conn, ReaderConnCloseHandler, + (void *)Stream); + } + } + Stream->Status = Established; + gettimeofday(&Stop, NULL); + timersub(&Stop, &Start, &Diff); + Stream->OpenTimeSecs = (double)Diff.tv_usec / 1e6 + Diff.tv_sec; + gettimeofday(&Stream->ValidStartTime, NULL); + Stream->Filename = Filename; + Stream->ParamsBlock = free_block; + STREAM_MUTEX_UNLOCK(Stream); + AddToLastCallFreeList(Stream); + Stream->DP_Interface->provideWriterDataToReader( + &Svcs, Stream->DP_Stream, ReturnData->WriterCohortSize, + Stream->ConnectionsToWriter, ReturnData->DP_WriterInfo); + CP_verbose(Stream, PerRankVerbose, + "Sending Reader Activate messages to writer\n"); + memset(&Msg, 0, sizeof(Msg)); + sendOneToEachWriterRank(Stream, + Stream->CPInfo->SharedCM->ReaderActivateFormat, + &Msg, &Msg.WSR_Stream); + CP_verbose(Stream, PerStepVerbose, + "Finish opening Stream \"%s\", starting with Step number %d\n", + Filename, ReturnData->StartingStepNumber); + + return Stream; +} + +// SstReaderGetParams is an SST entry point only called by the main +// program thread. It can only be called after initialization and +// only accesses data installed durinig initialization, it needs no +// locking. +extern void SstReaderGetParams(SstStream Stream, + SstMarshalMethod *WriterMarshalMethod, + int *WriterIsRowMajor) +{ + *WriterMarshalMethod = + (SstMarshalMethod)Stream->WriterConfigParams->MarshalMethod; + *WriterIsRowMajor = Stream->WriterConfigParams->IsRowMajor; +} + +/* + * CP_PeerSetupHandler is called by the network handler thread in + * response to incoming PeerSetup messages to setup the reader-side + * Peer list + */ +extern void CP_PeerSetupHandler(CManager cm, CMConnection conn, void *Msg_v, + void *client_data, attr_list attrs) +{ + PERFSTUBS_TIMER_START_FUNC(timer); + SstStream Stream; + struct _PeerSetupMsg *Msg = (struct _PeerSetupMsg *)Msg_v; + Stream = (SstStream)Msg->RS_Stream; + STREAM_MUTEX_LOCK(Stream); + CP_verbose(Stream, TraceVerbose, + "Received peer setup from rank %d, conn %p\n", Msg->WriterRank, + conn); + if (!Stream->ConnectionsToWriter) + { + CP_verbose(Stream, TraceVerbose, "Allocating connections to writer\n"); + Stream->ConnectionsToWriter = + calloc(sizeof(CP_PeerConnection), Msg->WriterCohortSize); + } + CP_verbose(Stream, TraceVerbose, + "Received peer setup from rank %d, conn %p\n", Msg->WriterRank, + conn); + if (Msg->WriterRank != -1) + { + Stream->ConnectionsToWriter[Msg->WriterRank].CMconn = conn; + CMConnection_add_reference(conn); + Stream->FailureContactRank = Msg->WriterRank; + } + CMconn_register_close_handler(conn, ReaderConnCloseHandler, (void *)Stream); + STREAM_CONDITION_SIGNAL(Stream); + STREAM_MUTEX_UNLOCK(Stream); + PERFSTUBS_TIMER_STOP_FUNC(timer); +} + +void queueTimestepMetadataMsgAndNotify(SstStream Stream, + struct _TimestepMetadataMsg *tsm, + CMConnection conn) +{ + STREAM_ASSERT_LOCKED(Stream); + if (tsm->Timestep < Stream->DiscardPriorTimestep) + { + struct _ReleaseTimestepMsg Msg; + memset(&Msg, 0, sizeof(Msg)); + Msg.Timestep = tsm->Timestep; + + /* + * send each writer rank a release for this timestep (actually goes to + * WSR Streams) + */ + if (tsm->Metadata != NULL) + { + CP_verbose(Stream, PerStepVerbose, + "Sending ReleaseTimestep message for PRIOR DISCARD " + "timestep %d, one to each writer\n", + tsm->Timestep); + sendOneToEachWriterRank( + Stream, Stream->CPInfo->SharedCM->ReleaseTimestepFormat, &Msg, + &Msg.WSR_Stream); + } + else + { + CP_verbose(Stream, PerStepVerbose, + "Received discard notice for timestep %d, " + "ignoring in PRIOR DISCARD\n", + tsm->Timestep); + } + } + + struct _TimestepMetadataList *New = malloc(sizeof(struct _RegisterQueue)); + New->MetadataMsg = tsm; + New->Next = NULL; + if (Stream->Timesteps) + { + struct _TimestepMetadataList *Last = Stream->Timesteps; + while (Last->Next) + { + Last = Last->Next; + } + Last->Next = New; + } + else + { + Stream->Timesteps = New; + } + Stream->Stats.TimestepMetadataReceived++; + if (tsm->Metadata) + { + Stream->Stats.MetadataBytesReceived += + (tsm->Metadata->DataSize + tsm->AttributeData->DataSize); + } + CP_verbose(Stream, PerRankVerbose, + "Received a Timestep metadata message for timestep %d, " + "signaling condition\n", + tsm->Timestep); + + STREAM_CONDITION_SIGNAL(Stream); + if ((Stream->Rank == 0) && + (Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && + (Stream->ConfigParams->AlwaysProvideLatestTimestep)) + { + /* + * IFF we are in CommMin mode, AND we are to always provide + * the newest timestep, then when a new timestep arrives then + * we want to release timesteps that are older than it, NOT + * INCLUDING ANY TIMESTEP IN CURRENT USE. + */ + CP_verbose(Stream, TraceVerbose, + "Got a new timestep in AlwaysProvideLatestTimestep mode, " + "discard older than %d\n", + tsm->Timestep); + releasePriorTimesteps(Stream, tsm->Timestep); + } +} + +struct _SstMetaMetaBlockInternal +{ + size_t TimestepAdded; + char *BlockData; + size_t BlockSize; + char *ID; + size_t IDSize; +}; + +void AddFormatsToMetaMetaInfo(SstStream Stream, + struct _TimestepMetadataMsg *Msg) +{ + FFSFormatList Formats = Msg->Formats; + STREAM_ASSERT_LOCKED(Stream); + while (Formats) + { + Stream->InternalMetaMetaInfo = + realloc(Stream->InternalMetaMetaInfo, + (sizeof(struct _SstMetaMetaBlockInternal) * + (Stream->InternalMetaMetaCount + 1))); + struct _SstMetaMetaBlockInternal *NewInfo = + &Stream->InternalMetaMetaInfo[Stream->InternalMetaMetaCount]; + Stream->InternalMetaMetaCount++; + NewInfo->TimestepAdded = Msg->Timestep; + NewInfo->ID = malloc(Formats->FormatIDRepLen); + NewInfo->IDSize = Formats->FormatIDRepLen; + NewInfo->BlockData = malloc(Formats->FormatServerRepLen); + NewInfo->BlockSize = Formats->FormatServerRepLen; + memcpy(NewInfo->ID, Formats->FormatIDRep, Formats->FormatIDRepLen); + memcpy(NewInfo->BlockData, Formats->FormatServerRep, + Formats->FormatServerRepLen); + Formats = Formats->Next; + } +} + +void AddAttributesToAttrDataList(SstStream Stream, + struct _TimestepMetadataMsg *Msg) +{ + if (Stream->AttrsRetrieved) + { + int i = 0; + while (Stream->InternalAttrDataInfo && + Stream->InternalAttrDataInfo[i].BlockData) + { + free(Stream->InternalAttrDataInfo[i].BlockData); + i++; + } + free(Stream->InternalAttrDataInfo); + Stream->InternalAttrDataInfo = NULL; + Stream->InternalAttrDataCount = 0; + Stream->AttrsRetrieved = 0; + } + if (Msg->AttributeData->DataSize == 0) + return; + + Stream->InternalAttrDataInfo = realloc( + Stream->InternalAttrDataInfo, + (sizeof(struct _SstBlock) * (Stream->InternalAttrDataCount + 2))); + struct _SstBlock *NewInfo = + &Stream->InternalAttrDataInfo[Stream->InternalAttrDataCount]; + Stream->InternalAttrDataCount++; + NewInfo->BlockData = malloc(Msg->AttributeData->DataSize); + NewInfo->BlockSize = Msg->AttributeData->DataSize; + memcpy(NewInfo->BlockData, Msg->AttributeData->block, + Msg->AttributeData->DataSize); + memset(&Stream->InternalAttrDataInfo[Stream->InternalAttrDataCount], 0, + sizeof(struct _SstData)); +} + +// CP_TimestepMetadataHandler is called by the network handler thread +// to handle incoming TimestepMetadata messages +void CP_TimestepMetadataHandler(CManager cm, CMConnection conn, void *Msg_v, + void *client_data, attr_list attrs) +{ + PERFSTUBS_TIMER_START_FUNC(timer); + SstStream Stream; + struct _TimestepMetadataMsg *Msg = (struct _TimestepMetadataMsg *)Msg_v; + Stream = (SstStream)Msg->RS_Stream; + STREAM_MUTEX_LOCK(Stream); + if ((Stream->Rank != 0) || + (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer)) + { + /* All ranks are getting this */ + if (Msg->Metadata == NULL) + { + CP_verbose( + Stream, PerRankVerbose, + "Received a message that timestep %d has been discarded\n", + Msg->Timestep); + + /* + * before discarding, install any precious metadata from this + * message + */ + if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) + { + FFSMarshalInstallPreciousMetadata(Stream, Msg); + } + else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) + { + AddFormatsToMetaMetaInfo(Stream, Msg); + AddAttributesToAttrDataList(Stream, Msg); + } + STREAM_MUTEX_UNLOCK(Stream); + + return; + } + else + { + CP_verbose( + Stream, PerStepVerbose, + "Received an incoming metadata message for timestep %d\n", + Msg->Timestep); + } + /* arrange for this message data to stay around */ + CMtake_buffer(cm, Msg); + + queueTimestepMetadataMsgAndNotify(Stream, Msg, conn); + } + else + { + /* I must be rank 0 and only I got this, I'll need to distribute it to + * everyone */ + /* arrange for this message data to stay around */ + CMtake_buffer(cm, Msg); + + queueTimestepMetadataMsgAndNotify(Stream, Msg, conn); + } + STREAM_MUTEX_UNLOCK(Stream); + PERFSTUBS_TIMER_STOP_FUNC(timer); +} + +// CP_WriterResponseHandler is called by the network handler thread to +// handle WriterResponse messages. One of these will be sent to rank0 +// reader from rank0 writer in response to the ReaderRegister message. +// It will find rank0 writer in CMCondition_wait(). It's only action +// is to associate the incoming response message to the CMcondition +// we're waiting on,m so no locking is necessary. +void CP_WriterResponseHandler(CManager cm, CMConnection conn, void *Msg_v, + void *client_data, attr_list attrs) +{ + PERFSTUBS_REGISTER_THREAD(); + PERFSTUBS_TIMER_START_FUNC(timer); + struct _WriterResponseMsg *Msg = (struct _WriterResponseMsg *)Msg_v; + struct _WriterResponseMsg **response_ptr; + // fprintf(stderr, "Received a writer_response message for condition + // %d\n", + // Msg->WriterResponseCondition); + // fprintf(stderr, "The responding writer has cohort of size %d :\n", + // Msg->writer_CohortSize); + // for (int i = 0; i < Msg->writer_CohortSize; i++) { + // fprintf(stderr, " rank %d CP contact info: %s, %p\n", i, + // Msg->CP_WriterInfo[i]->ContactInfo, + // Msg->CP_WriterInfo[i]->WriterID); + // } + + /* arrange for this message data to stay around */ + CMtake_buffer(cm, Msg); + + /* attach the message to the CMCondition so it an be retrieved by the main + * thread */ + response_ptr = + CMCondition_get_client_data(cm, Msg->WriterResponseCondition); + *response_ptr = Msg; + + /* wake the main thread */ + CMCondition_signal(cm, Msg->WriterResponseCondition); + PERFSTUBS_TIMER_STOP_FUNC(timer); +} + +// CP_DPQueryResponseHandler is called by the network handler thread to +// handle DPQueryResponse messages. One of these will be sent to rank0 +// reader from rank0 writer in response to the DPQuery message. +// It will find rank0 writer in CMCondition_wait(). It's only action +// is to associate the incoming response message to the CMcondition +// we're waiting on,m so no locking is necessary. +void CP_DPQueryResponseHandler(CManager cm, CMConnection conn, void *Msg_v, + void *client_data, attr_list attrs) +{ + PERFSTUBS_REGISTER_THREAD(); + PERFSTUBS_TIMER_START_FUNC(timer); + struct _DPQueryResponseMsg *Msg = (struct _DPQueryResponseMsg *)Msg_v; + char *NeededDP_ptr; + + // fprintf(stderr, "Received a writer_response message for condition + // %d\n", + // Msg->WriterResponseCondition); + // fprintf(stderr, "The responding writer has cohort of size %d :\n", + // Msg->writer_CohortSize); + // for (int i = 0; i < Msg->writer_CohortSize; i++) { + // fprintf(stderr, " rank %d CP contact info: %s, %p\n", i, + // Msg->CP_WriterInfo[i]->ContactInfo, + // Msg->CP_WriterInfo[i]->WriterID); + // } + + /* attach the message to the CMCondition so it an be retrieved by the main + * thread */ + NeededDP_ptr = + CMCondition_get_client_data(cm, Msg->WriterResponseCondition); + strcpy(NeededDP_ptr, Msg->OperativeDP); + + /* wake the main thread */ + CMCondition_signal(cm, Msg->WriterResponseCondition); + PERFSTUBS_TIMER_STOP_FUNC(timer); +} + +// CP_WriterCloseHandler is called by the network handler thread to +// handle WriterResponse messages. One of these will be sent to rank0 +// reader from rank0 writer in response to the ReaderRegister message. +// It will find rank0 writer in CMCondition_wait(). It's only action +// is to associate the incoming response message to the CMcondition +// we're waiting on, so no locking is necessary. +extern void CP_WriterCloseHandler(CManager cm, CMConnection conn, void *Msg_v, + void *client_data, attr_list attrs) +{ + PERFSTUBS_TIMER_START_FUNC(timer); + WriterCloseMsg Msg = (WriterCloseMsg)Msg_v; + SstStream Stream = (SstStream)Msg->RS_Stream; + + STREAM_MUTEX_LOCK(Stream); + CP_verbose(Stream, PerStepVerbose, + "Received a writer close message. " + "Timestep %d was the final timestep.\n", + Msg->FinalTimestep); + + Stream->FinalTimestep = Msg->FinalTimestep; + Stream->Status = PeerClosed; + /* wake anyone that might be waiting */ + STREAM_CONDITION_SIGNAL(Stream); + STREAM_MUTEX_UNLOCK(Stream); + PERFSTUBS_TIMER_STOP_FUNC(timer); +} + +// CP_CommPatternLockedHandler is called by the network handler thread +// to handle CommPatternLocked messages. It can only be called +// post-registration and won't be called after Close. Lock to protect +// against race conditions in determining comm lock scenario. +extern void CP_CommPatternLockedHandler(CManager cm, CMConnection conn, + void *Msg_v, void *client_data, + attr_list attrs) +{ + CommPatternLockedMsg Msg = (CommPatternLockedMsg)Msg_v; + SstStream Stream = (SstStream)Msg->RS_Stream; + + STREAM_MUTEX_LOCK(Stream); + CP_verbose( + Stream, PerStepVerbose, + "Received a CommPatternLocked message, beginning with Timestep %d.\n", + Msg->Timestep); + + Stream->CommPatternLocked = 1; + Stream->CommPatternLockedTimestep = Msg->Timestep; + STREAM_MUTEX_UNLOCK(Stream); +} + +static long MaxQueuedMetadata(SstStream Stream) +{ + struct _TimestepMetadataList *Next; + long MaxTimestep = -1; + STREAM_ASSERT_LOCKED(Stream); + Next = Stream->Timesteps; + if (Next == NULL) + { + CP_verbose(Stream, TraceVerbose, "MaxQueued Timestep returning -1\n"); + return -1; + } + while (Next) + { + if (Next->MetadataMsg->Timestep >= MaxTimestep) + { + MaxTimestep = Next->MetadataMsg->Timestep; + } + Next = Next->Next; + } + CP_verbose(Stream, TraceVerbose, "MaxQueued Timestep returning %ld\n", + MaxTimestep); + return MaxTimestep; +} + +static long NextQueuedMetadata(SstStream Stream) +{ + struct _TimestepMetadataList *Next; + long MinTimestep = LONG_MAX; + STREAM_ASSERT_LOCKED(Stream); + Next = Stream->Timesteps; + if (Next == NULL) + { + CP_verbose(Stream, TraceVerbose, "NextQueued Timestep returning -1\n"); + return -1; + } + while (Next) + { + if (Next->MetadataMsg->Timestep <= MinTimestep) + { + MinTimestep = Next->MetadataMsg->Timestep; + } + Next = Next->Next; + } + CP_verbose(Stream, TraceVerbose, "NextQueued Timestep returning %ld\n", + MinTimestep); + return MinTimestep; +} + +// A delayed task to wake the stream after a specific time period +static void triggerDataCondition(CManager cm, void *vStream) +{ + SstStream Stream = (SstStream)vStream; + + STREAM_MUTEX_LOCK(Stream); + /* wake the sleeping main thread for timeout */ + STREAM_CONDITION_SIGNAL(Stream); + STREAM_MUTEX_UNLOCK(Stream); +} + +static void waitForMetadataWithTimeout(SstStream Stream, float timeout_secs) +{ + struct _TimestepMetadataList *Next; + struct timeval start, now, end; + int timeout_int_sec = floor(timeout_secs); + int timeout_int_usec = ((timeout_secs - floorf(timeout_secs)) * 1000000); + CMTaskHandle TimeoutTask = NULL; + + STREAM_ASSERT_LOCKED(Stream); + gettimeofday(&start, NULL); + Next = Stream->Timesteps; + CP_verbose( + Stream, PerRankVerbose, + "Wait for metadata with timeout %g secs starting at time %ld.%06ld \n", + timeout_secs, start.tv_sec, start.tv_usec); + if (Next) + { + CP_verbose(Stream, PerRankVerbose, + "Returning from wait with timeout, NO TIMEOUT\n"); + } + end.tv_sec = start.tv_sec + timeout_int_sec; + end.tv_usec = start.tv_usec + timeout_int_usec; + if (end.tv_usec > 1000000) + { + end.tv_sec++; + end.tv_usec -= 1000000; + } + if (end.tv_sec < start.tv_sec) + { + // rollover + end.tv_sec = INT_MAX; + } + // special case + if (timeout_secs == 0.0) + { + CP_verbose( + Stream, PerRankVerbose, + "Returning from wait With no data after zero timeout poll\n"); + return; + } + + TimeoutTask = + CMadd_delayed_task(Stream->CPInfo->SharedCM->cm, timeout_int_sec, + timeout_int_usec, triggerDataCondition, Stream); + while (1) + { + Next = Stream->Timesteps; + if (Next) + { + CMremove_task(TimeoutTask); + CP_verbose(Stream, PerRankVerbose, + "Returning from wait with timeout, NO TIMEOUT\n"); + return; + } + if (Stream->Status != Established) + { + CP_verbose(Stream, PerRankVerbose, + "Returning from wait with timeout, STREAM NO " + "LONGER ESTABLISHED\n"); + return; + } + gettimeofday(&now, NULL); + CP_verbose(Stream, TraceVerbose, + "timercmp, now is %ld.%06ld end is %ld.%06ld \n", + now.tv_sec, now.tv_usec, end.tv_sec, end.tv_usec); + if (timercmp(&now, &end, >)) + { + CP_verbose(Stream, PerRankVerbose, + "Returning from wait after timing out\n"); + return; + } + /* wait until we get the timestep metadata or something else changes */ + STREAM_CONDITION_WAIT(Stream); + } + /* NOTREACHED */ +} + +static void releasePriorTimesteps(SstStream Stream, long Latest) +{ + struct _TimestepMetadataList *Next, *Last; + STREAM_ASSERT_LOCKED(Stream); + CP_verbose(Stream, PerRankVerbose, + "Releasing any timestep earlier than %d\n", Latest); + Next = Stream->Timesteps; + Last = NULL; + while (Next) + { + if ((Next->MetadataMsg->Timestep < Latest) && + (Next->MetadataMsg->Timestep != Stream->CurrentWorkingTimestep)) + { + struct _TimestepMetadataList *This = Next; + struct _ReleaseTimestepMsg Msg; + Next = This->Next; + + /* + * before discarding, install any precious metadata from this + * message + */ + if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) + { + FFSMarshalInstallPreciousMetadata(Stream, This->MetadataMsg); + } + else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) + { + AddFormatsToMetaMetaInfo(Stream, This->MetadataMsg); + AddAttributesToAttrDataList(Stream, This->MetadataMsg); + } + + memset(&Msg, 0, sizeof(Msg)); + Msg.Timestep = This->MetadataMsg->Timestep; + + /* + * send each writer rank a release for this timestep (actually goes + * to WSR + * Streams) + */ + CP_verbose(Stream, PerRankVerbose, + "Sending ReleaseTimestep message for RELEASE " + "PRIOR timestep %d, one to each writer\n", + This->MetadataMsg->Timestep); + + if (Last == NULL) + { + Stream->Timesteps = Next; + } + else + { + Last->Next = Next; + } + STREAM_MUTEX_UNLOCK(Stream); + sendOneToEachWriterRank( + Stream, Stream->CPInfo->SharedCM->ReleaseTimestepFormat, &Msg, + &Msg.WSR_Stream); + if (This->MetadataMsg == NULL) + printf("READER RETURN_BUFFER, metadatamsg == %p, line %d\n", + This->MetadataMsg, __LINE__); + CMreturn_buffer(Stream->CPInfo->SharedCM->cm, This->MetadataMsg); + STREAM_MUTEX_LOCK(Stream); + free(This); + } + else + { + Last = Next; + Next = Next->Next; + } + } +} + +static void FreeTimestep(SstStream Stream, long Timestep) +{ + /* + * remove local metadata for that timestep + */ + struct _TimestepMetadataList *List = Stream->Timesteps; + + STREAM_ASSERT_LOCKED(Stream); + if (Stream->Timesteps->MetadataMsg->Timestep == Timestep) + { + Stream->Timesteps = List->Next; + if (List->MetadataMsg == NULL) + printf("READER RETURN_BUFFER, List->MEtadataMsg == %p, line %d\n", + List->MetadataMsg, __LINE__); + CMreturn_buffer(Stream->CPInfo->SharedCM->cm, List->MetadataMsg); + + free(List); + } + else + { + struct _TimestepMetadataList *last = List; + List = List->Next; + while (List != NULL) + { + if (List->MetadataMsg->Timestep == Timestep) + { + last->Next = List->Next; + if (List->MetadataMsg == NULL) + printf("READER RETURN_BUFFER, List->MEtadataMsg == %p, " + "line %d\n", + List->MetadataMsg, __LINE__); + CMreturn_buffer(Stream->CPInfo->SharedCM->cm, + List->MetadataMsg); + + free(List); + break; + } + last = List; + List = List->Next; + } + } +} + +static TSMetadataList waitForNextMetadata(SstStream Stream, long LastTimestep) +{ + TSMetadataList FoundTS = NULL; + CP_verbose(Stream, PerRankVerbose, + "Wait for next metadata after last timestep %d\n", LastTimestep); + while (1) + { + struct _TimestepMetadataList *Next; + Next = Stream->Timesteps; + while (Next) + { + CP_verbose(Stream, TraceVerbose, + "Examining metadata for Timestep %d\n", + Next->MetadataMsg->Timestep); + if (((Next->MetadataMsg->Metadata == NULL) || + (Next->MetadataMsg->Timestep < + Stream->DiscardPriorTimestep)) && + (FoundTS == NULL)) + { + /* + * Either this is a dummy timestep for something that + * was discarded on the writer side, or it is a + * timestep that satisfies DiscardPriorTimestep and + * we've already sent a release for it. Now is the + * time to install the 'precious' info that it carried + * (Attributes and formats) and then discard it. + */ + CP_verbose(Stream, PerRankVerbose, + "SstAdvanceStep installing precious " + "metadata for discarded TS %d\n", + Next->MetadataMsg->Timestep); + if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) + { + FFSMarshalInstallPreciousMetadata(Stream, + Next->MetadataMsg); + } + else if (Stream->WriterConfigParams->MarshalMethod == + SstMarshalBP5) + { + AddFormatsToMetaMetaInfo(Stream, Next->MetadataMsg); + AddAttributesToAttrDataList(Stream, Next->MetadataMsg); + } + TSMetadataList Tmp = Next; + Next = Next->Next; + FreeTimestep(Stream, Tmp->MetadataMsg->Timestep); + continue; + } + if (Next->MetadataMsg->Timestep >= LastTimestep) + { + if ((FoundTS == NULL) && + (Next->MetadataMsg->Timestep > LastTimestep)) + { + FoundTS = Next; + break; + } + else if ((FoundTS != NULL) && (FoundTS->MetadataMsg->Timestep > + Next->MetadataMsg->Timestep)) + { + FoundTS = Next; + break; + } + } + Next = Next->Next; + } + if (FoundTS) + { + CP_verbose(Stream, PerRankVerbose, + "Returning metadata for Timestep %d\n", + FoundTS->MetadataMsg->Timestep); + Stream->CurrentWorkingTimestep = FoundTS->MetadataMsg->Timestep; + return FoundTS; + } + /* didn't find a good next timestep, check Stream status */ + if ((Stream->Status != Established) || + ((Stream->FinalTimestep != INT_MAX) && + (Stream->FinalTimestep >= LastTimestep))) + { + CP_verbose(Stream, TraceVerbose, + "Stream Final Timestep is %d, last timestep was %d\n", + Stream->FinalTimestep, LastTimestep); + if (Stream->Status == NotOpen) + { + CP_verbose(Stream, PerRankVerbose, + "Wait for next metadata returning NULL because " + "channel was never fully established\n"); + } + else if (Stream->Status == PeerFailed) + { + CP_verbose(Stream, PerRankVerbose, + "Wait for next metadata returning NULL because " + "the connection failed before final timestep " + "notification\n"); + } + else + { + CP_verbose(Stream, PerStepVerbose, + "Wait for next metadata returning NULL, status %d ", + Stream->Status); + } + /* closed or failed, return NULL */ + Stream->CurrentWorkingTimestep = -1; + return NULL; + } + CP_verbose(Stream, PerRankVerbose, + "Waiting for metadata for a Timestep later than TS %d\n", + LastTimestep); + CP_verbose(Stream, TraceVerbose, + "(PID %lx, TID %lx) Stream status is %s\n", (long)getpid(), + (long)gettid(), SSTStreamStatusStr[Stream->Status]); + /* wait until we get the timestep metadata or something else changes */ + STREAM_CONDITION_WAIT(Stream); + } + /* NOTREACHED */ +} + +// SstGetCurMetadata is an SST entry point only called by the main +// program thread. Only accesses the CurrentMetadata field which is +// touched only by other subroutines called by the main program +// thread, it needs no locking. +extern SstFullMetadata SstGetCurMetadata(SstStream Stream) +{ + return Stream->CurrentMetadata; +} + +extern SstMetaMetaList SstGetNewMetaMetaData(SstStream Stream, long Timestep) +{ + int RetCount = 0; + STREAM_MUTEX_LOCK(Stream); + int64_t LastRetTimestep = -1; + int i; + for (i = 0; i < Stream->InternalMetaMetaCount; i++) + { + if ((LastRetTimestep == -1) || + (Stream->InternalMetaMetaInfo[i].TimestepAdded >= LastRetTimestep)) + RetCount++; + } + if (RetCount == 0) + { + STREAM_MUTEX_UNLOCK(Stream); + return NULL; + } + SstMetaMetaList ret = malloc(sizeof(ret[0]) * (RetCount + 1)); + int j = 0; + for (i = 0; i < Stream->InternalMetaMetaCount; i++) + { + if ((LastRetTimestep == -1) || + (Stream->InternalMetaMetaInfo[i].TimestepAdded >= LastRetTimestep)) + { + // no copies, keep memory ownership in SST + ret[j].BlockData = Stream->InternalMetaMetaInfo[i].BlockData; + ret[j].BlockSize = Stream->InternalMetaMetaInfo[i].BlockSize; + ret[j].ID = Stream->InternalMetaMetaInfo[i].ID; + ret[j].IDSize = Stream->InternalMetaMetaInfo[i].IDSize; + j++; + } + } + memset(&ret[j], 0, sizeof(ret[j])); + LastRetTimestep = Timestep; + STREAM_MUTEX_UNLOCK(Stream); + return ret; +} + +extern SstBlock SstGetAttributeData(SstStream Stream, long Timestep) +{ + STREAM_MUTEX_LOCK(Stream); + struct _SstBlock *InternalAttrDataInfo = Stream->InternalAttrDataInfo; + Stream->AttrsRetrieved = 1; + STREAM_MUTEX_UNLOCK(Stream); + return InternalAttrDataInfo; +} + +static void AddToReadStats(SstStream Stream, int Rank, long Timestep, + size_t Length) +{ + if (!Stream->RanksRead) + Stream->RanksRead = calloc(1, Stream->WriterCohortSize); + Stream->RanksRead[Rank] = 1; + Stream->Stats.BytesRead += Length; +} + +#ifndef min +#define min(a, b) (((a) < (b)) ? (a) : (b)) +#endif + +static void ReleaseTSReadStats(SstStream Stream, long Timestep) +{ + int ThisFanIn = 0; + if (Stream->RanksRead) + { + for (int i = 0; i < Stream->WriterCohortSize; i++) + { + if (Stream->RanksRead[i]) + ThisFanIn++; + } + memset(Stream->RanksRead, 0, Stream->WriterCohortSize); + } + if (Stream->Stats.TimestepsConsumed == 1) + { + Stream->Stats.RunningFanIn = ThisFanIn; + } + else + { + Stream->Stats.RunningFanIn = + Stream->Stats.RunningFanIn + + ((double)ThisFanIn - Stream->Stats.RunningFanIn) / + min(Stream->Stats.TimestepsConsumed, 100); + } +} + +// SstReadRemotememory is only called by the main +// program thread. +extern void *SstReadRemoteMemory(SstStream Stream, int Rank, long Timestep, + size_t Offset, size_t Length, void *Buffer, + void *DP_TimestepInfo) +{ + if (Stream->ConfigParams->ReaderShortCircuitReads) + return NULL; + Stream->Stats.BytesTransferred += Length; + AddToReadStats(Stream, Rank, Timestep, Length); + return Stream->DP_Interface->readRemoteMemory( + &Svcs, Stream->DP_Stream, Rank, Timestep, Offset, Length, Buffer, + DP_TimestepInfo); +} + +static void sendOneToEachWriterRank(SstStream Stream, CMFormat f, void *Msg, + void **WS_StreamPtr) +{ + if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) + { + int i = 0; + while (Stream->Peers[i] != -1) + { + int peer = Stream->Peers[i]; + CMConnection conn = Stream->ConnectionsToWriter[peer].CMconn; + /* add the writer Stream identifier to each outgoing + * message */ + *WS_StreamPtr = Stream->ConnectionsToWriter[peer].RemoteStreamID; + if (CMwrite(conn, f, Msg) != 1) + { + switch (Stream->Status) + { + case NotOpen: + case Opening: + case Established: + CP_verbose(Stream, CriticalVerbose, + "Message failed to send to writer %d (%p)\n", + peer, *WS_StreamPtr); + break; + case PeerClosed: + case PeerFailed: + case Closed: + case Destroyed: + // Don't warn on send failures for closing/closed clients + break; + } + } + i++; + } + } + else + { + if (Stream->Rank == 0) + { + int peer = 0; + CMConnection conn = Stream->ConnectionsToWriter[peer].CMconn; + /* add the writer Stream identifier to each outgoing + * message */ + *WS_StreamPtr = Stream->ConnectionsToWriter[peer].RemoteStreamID; + if (CMwrite(conn, f, Msg) != 1) + { + switch (Stream->Status) + { + case NotOpen: + case Opening: + case Established: + CP_verbose(Stream, CriticalVerbose, + "Message failed to send to writer %d (%p)\n", + peer, *WS_StreamPtr); + break; + case PeerClosed: + case PeerFailed: + case Closed: + case Destroyed: + // Don't warn on send failures for closing/closed clients + break; + } + } + } + } +} + +// SstReaderDefinitionLock is only called by the main +// program thread. +extern void SstReaderDefinitionLock(SstStream Stream, long EffectiveTimestep) +{ + struct _LockReaderDefinitionsMsg Msg; + + memset(&Msg, 0, sizeof(Msg)); + Msg.Timestep = EffectiveTimestep; + + sendOneToEachWriterRank( + Stream, Stream->CPInfo->SharedCM->LockReaderDefinitionsFormat, &Msg, + &Msg.WSR_Stream); +} + +// SstReleaseStep is only called by the main program thread. It +// locks to protect the timestep list before freeing the local +// representation of the resleased timestep. +extern void SstReleaseStep(SstStream Stream) +{ + long Timestep = Stream->ReaderTimestep; + struct _ReleaseTimestepMsg Msg; + + PERFSTUBS_TIMER_START_FUNC(timer); + STREAM_MUTEX_LOCK(Stream); + if (Stream->DP_Interface->RSReleaseTimestep) + { + (Stream->DP_Interface->RSReleaseTimestep)(&Svcs, Stream->DP_Stream, + Timestep); + } + ReleaseTSReadStats(Stream, Timestep); + STREAM_MUTEX_UNLOCK(Stream); + + if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) || + (Stream->Rank == 0)) + { + STREAM_MUTEX_LOCK(Stream); + FreeTimestep(Stream, Timestep); + STREAM_MUTEX_UNLOCK(Stream); + } + + SMPI_Barrier(Stream->mpiComm); + + memset(&Msg, 0, sizeof(Msg)); + Msg.Timestep = Timestep; + + /* + * send each writer rank a release for this timestep (actually goes to WSR + * Streams) + */ + CP_verbose( + Stream, PerRankVerbose, + "Sending ReleaseTimestep message for timestep %d, one to each writer\n", + Timestep); + sendOneToEachWriterRank(Stream, + Stream->CPInfo->SharedCM->ReleaseTimestepFormat, + &Msg, &Msg.WSR_Stream); + + if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) + { + FFSClearTimestepData(Stream); + } + PERFSTUBS_TIMER_STOP_FUNC(timer); +} + +static void NotifyDPArrivedMetadata(SstStream Stream, + struct _TimestepMetadataMsg *MetadataMsg) +{ + if ((MetadataMsg->Metadata != NULL) && + (MetadataMsg->Timestep > Stream->LastDPNotifiedTimestep)) + { + if (Stream->DP_Interface->timestepArrived) + { + Stream->DP_Interface->timestepArrived(&Svcs, Stream->DP_Stream, + MetadataMsg->Timestep, + MetadataMsg->PreloadMode); + } + Stream->LastDPNotifiedTimestep = MetadataMsg->Timestep; + } +} + +/* + * wait for metadata for Timestep indicated to arrive, or fail with EndOfStream + * or Error + */ +static SstStatusValue SstAdvanceStepPeer(SstStream Stream, SstStepMode mode, + const float timeout_sec) +{ + + TSMetadataList Entry; + + PERFSTUBS_TIMER_START(timer, "Waiting on metadata per rank per timestep"); + + if ((timeout_sec >= 0.0) || (mode == SstLatestAvailable)) + { + struct _GlobalOpInfo + { + float timeout_sec; + int mode; + long LatestTimestep; + }; + struct _GlobalOpInfo my_info; + struct _GlobalOpInfo *global_info = NULL; + long NextTimestep; + + if (Stream->Rank == 0) + { + global_info = malloc(sizeof(my_info) * Stream->CohortSize); + CP_verbose(Stream, PerRankVerbose, + "In special case of advancestep, mode is %d, " + "Timeout Sec is %g, flt_max is %g\n", + mode, timeout_sec, FLT_MAX); + } + my_info.LatestTimestep = MaxQueuedMetadata(Stream); + my_info.timeout_sec = timeout_sec; + my_info.mode = mode; + SMPI_Gather(&my_info, sizeof(my_info), SMPI_CHAR, global_info, + sizeof(my_info), SMPI_CHAR, 0, Stream->mpiComm); + if (Stream->Rank == 0) + { + long Biggest = -1; + long Smallest = LONG_MAX; + for (int i = 0; i < Stream->CohortSize; i++) + { + if (global_info[i].LatestTimestep > Biggest) + { + Biggest = global_info[i].LatestTimestep; + } + if (global_info[i].LatestTimestep < Smallest) + { + Smallest = global_info[i].LatestTimestep; + } + } + + free(global_info); + + /* + * Several situations are possible here, depending upon + * whether or not a timeout is specified and/or + * LatestAvailable is specified, and whether or not we + * have timesteps queued anywhere. If they want + * LatestAvailable and we have any Timesteps queued + * anywhere, we decide upon a timestep to return and + * assume that all ranks will get it soon (or else we're + * in failure mode). If there are no timesteps queued + * anywhere, then we're going to wait for timeout seconds + * ON RANK 0. RANK 0 AND ONLY RANK 0 WILL DECIDE IF WE + * TIMEOUT OR RETURN WITH DATA. It is possible that other + * ranks get timestep metadata before the timeout expires, + * but we don't care. Whatever would happen on rank 0 is + * what happens everywhere. + */ + + if (Biggest == -1) + { + // AllQueuesEmpty + if (timeout_sec >= 0.0) + { + waitForMetadataWithTimeout(Stream, timeout_sec); + } + else + { + waitForMetadataWithTimeout(Stream, FLT_MAX); + } + NextTimestep = + MaxQueuedMetadata(Stream); /* might be -1 if we timed out */ + } + else + { + /* + * we've actually got a choice here. "Smallest" is + * the LatestTimestep that everyone has. "Biggest" is + * the Latest that someone has seen, and presumably + * others will see shortly. I'm going to go with Biggest + * until I have a reason to prefer one or the other. + */ + if (mode == SstLatestAvailable) + { + // latest available + CP_verbose(Stream, PerRankVerbose, + "Returning Biggest timestep available " + "%ld because LatestAvailable " + "specified\n", + Biggest); + NextTimestep = Biggest; + } + else + { + // next available (take the oldest that everyone has) + CP_verbose(Stream, PerRankVerbose, + "Returning Smallest timestep available " + "%ld because NextAvailable specified\n", + Smallest); + NextTimestep = Smallest; + } + } + if ((NextTimestep == -1) && (Stream->Status == PeerClosed)) + { + /* force everyone to close */ + NextTimestep = -2; + } + if ((NextTimestep == -1) && (Stream->Status == PeerFailed)) + { + /* force everyone to return failed */ + NextTimestep = -3; + } + SMPI_Bcast(&NextTimestep, 1, SMPI_LONG, 0, Stream->mpiComm); + } + else + { + STREAM_MUTEX_UNLOCK(Stream); + SMPI_Bcast(&NextTimestep, 1, SMPI_LONG, 0, Stream->mpiComm); + STREAM_MUTEX_LOCK(Stream); + } + if (NextTimestep == -2) + { + /* there was a peerClosed setting on rank0, we'll close */ + Stream->Status = PeerClosed; + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStep returning EndOfStream at timestep %d\n", + Stream->ReaderTimestep); + return SstEndOfStream; + } + if (NextTimestep == -3) + { + /* there was a peerFailed setting on rank0, we'll fail */ + Stream->Status = PeerFailed; + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStep returning EndOfStream at timestep %d\n", + Stream->ReaderTimestep); + STREAM_MUTEX_UNLOCK(Stream); + Stream->DP_Interface->notifyConnFailure(&Svcs, Stream->DP_Stream, + 0); + STREAM_MUTEX_LOCK(Stream); + return SstFatalError; + } + if (NextTimestep == -1) + { + CP_verbose(Stream, PerStepVerbose, + "AdvancestepPeer timing out on no data\n"); + return SstTimeout; + } + if (mode == SstLatestAvailable) + { + // latest available + /* release all timesteps from before NextTimestep, then fall + * through below */ + /* Side note: It is possible that someone could get a "prior" + * timestep after this point. It has to be released upon + * arrival */ + CP_verbose(Stream, PerStepVerbose, + "timed or Latest timestep, determined NextTimestep %d\n", + NextTimestep); + Stream->DiscardPriorTimestep = NextTimestep; + releasePriorTimesteps(Stream, NextTimestep); + } + } + + Entry = waitForNextMetadata(Stream, Stream->ReaderTimestep); + + PERFSTUBS_TIMER_STOP(timer); + + if (Entry) + { + NotifyDPArrivedMetadata(Stream, Entry->MetadataMsg); + + if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) + { + PERFSTUBS_TIMER_START(timerFFS, "FFS marshaling case"); + FFSMarshalInstallMetadata(Stream, Entry->MetadataMsg); + PERFSTUBS_TIMER_STOP(timerFFS); + } + else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) + { + AddFormatsToMetaMetaInfo(Stream, Entry->MetadataMsg); + AddAttributesToAttrDataList(Stream, Entry->MetadataMsg); + } + Stream->ReaderTimestep = Entry->MetadataMsg->Timestep; + SstFullMetadata Mdata = malloc(sizeof(struct _SstFullMetadata)); + memset(Mdata, 0, sizeof(struct _SstFullMetadata)); + Mdata->WriterCohortSize = Entry->MetadataMsg->CohortSize; + Mdata->WriterMetadata = + malloc(sizeof(Mdata->WriterMetadata[0]) * Mdata->WriterCohortSize); + for (int i = 0; i < Mdata->WriterCohortSize; i++) + { + Mdata->WriterMetadata[i] = &Entry->MetadataMsg->Metadata[i]; + } + if (Stream->DP_Interface->TimestepInfoFormats == NULL) + { + // DP didn't provide struct info, no valid data + Mdata->DP_TimestepInfo = NULL; + } + else + { + Mdata->DP_TimestepInfo = Entry->MetadataMsg->DP_TimestepInfo; + } + Stream->CurrentWorkingTimestep = Entry->MetadataMsg->Timestep; + Stream->CurrentMetadata = Mdata; + + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStep returning Success on timestep %d\n", + Entry->MetadataMsg->Timestep); + return SstSuccess; + } + if (Stream->Status == PeerClosed) + { + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStepPeer returning EndOfStream at timestep %d\n", + Stream->ReaderTimestep); + return SstEndOfStream; + } + else + { + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStep returning FatalError at timestep %d\n", + Stream->ReaderTimestep); + return SstFatalError; + } +} + +static SstStatusValue SstAdvanceStepMin(SstStream Stream, SstStepMode mode, + const float timeout_sec) +{ + TSMetadataDistributionMsg ReturnData; + struct _TimestepMetadataMsg *MetadataMsg; + SstStatusValue ret; + + void *free_block; + + if (Stream->Rank == 0) + { + struct _TimestepMetadataDistributionMsg msg; + SstStatusValue return_value = SstSuccess; + TSMetadataList RootEntry = NULL; + + memset(&msg, 0, sizeof(msg)); + msg.TSmsg = NULL; + msg.CommPatternLockedTimestep = -1; + if (Stream->CommPatternLocked == 1) + { + msg.CommPatternLockedTimestep = Stream->CommPatternLockedTimestep; + } + if ((timeout_sec >= 0.0) || (mode == SstLatestAvailable)) + { + long NextTimestep = -1; + long LatestTimestep = MaxQueuedMetadata(Stream); + /* + * Several situations are possible here, depending upon + * whether or not a timeout is specified and/or + * LatestAvailable is specified, and whether or not we + * have timesteps queued anywhere. If they want + * LatestAvailable and we have any Timesteps queued + * anywhere, we decide upon a timestep to return and + * assume that all ranks will get it soon (or else we're + * in failure mode). If there are no timesteps queued + * anywhere, then we're going to wait for timeout seconds + * ON RANK 0. RANK 0 AND ONLY RANK 0 WILL DECIDE IF WE + * TIMEOUT OR RETURN WITH DATA. It is possible that other + * ranks get timestep metadata before the timeout expires, + * but we don't care. Whatever would happen on rank 0 is + * what happens everywhere. + */ + + if (LatestTimestep == -1) + { + // AllQueuesEmpty + if (timeout_sec >= 0.0) + { + waitForMetadataWithTimeout(Stream, timeout_sec); + } + else + { + waitForMetadataWithTimeout(Stream, FLT_MAX); + } + NextTimestep = + MaxQueuedMetadata(Stream); /* might be -1 if we timed out */ + } + else + { + if (mode == SstLatestAvailable) + { + // latest available + CP_verbose(Stream, PerStepVerbose, + "Returning latest timestep available " + "%ld because LatestAvailable " + "specified\n", + LatestTimestep); + NextTimestep = LatestTimestep; + } + else + { + // next available (take the oldest that everyone has) + NextTimestep = NextQueuedMetadata(Stream); + CP_verbose(Stream, PerStepVerbose, + "Returning Smallest timestep available " + "%ld because NextAvailable specified\n", + NextTimestep); + } + } + if (Stream->Status == PeerFailed) + { + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStepMin returning FatalError because of " + "connection failure at timestep %d\n", + Stream->ReaderTimestep); + return_value = SstFatalError; + } + else if ((NextTimestep == -1) && (Stream->Status == PeerClosed)) + { + CP_verbose( + Stream, PerStepVerbose, + "SstAdvanceStepMin returning EndOfStream at timestep %d\n", + Stream->ReaderTimestep); + return_value = SstEndOfStream; + } + else if (NextTimestep == -1) + { + CP_verbose(Stream, PerStepVerbose, + "AdvancestepMin timing out on no data\n"); + return_value = SstTimeout; + } + else if (mode == SstLatestAvailable) + { + // latest available + /* release all timesteps from before NextTimestep, then fall + * through below */ + /* Side note: It is possible that someone could get a "prior" + * timestep after this point. It has to be released upon + * arrival */ + CP_verbose( + Stream, PerStepVerbose, + "timed or Latest timestep, determined NextTimestep %d\n", + NextTimestep); + Stream->DiscardPriorTimestep = NextTimestep; + releasePriorTimesteps(Stream, NextTimestep); + } + } + if (Stream->Status == PeerFailed) + { + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStepMin returning FatalError because of " + "conn failure at timestep %d\n", + Stream->ReaderTimestep); + return_value = SstFatalError; + } + if (return_value == SstSuccess) + { + RootEntry = waitForNextMetadata(Stream, Stream->ReaderTimestep); + } + if (RootEntry) + { + msg.TSmsg = RootEntry->MetadataMsg; + msg.ReturnValue = return_value; + CP_verbose(Stream, TraceVerbose, + "Setting TSmsg to Rootentry value\n"); + } + else + { + if (return_value == SstSuccess) + { + if (Stream->Status == PeerClosed) + { + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStepMin rank 0 returning " + "EndOfStream at timestep %d\n", + Stream->ReaderTimestep); + msg.ReturnValue = SstEndOfStream; + } + else + { + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStepMin rank 0 returning " + "FatalError at timestep %d\n", + Stream->ReaderTimestep); + msg.ReturnValue = SstFatalError; + } + CP_verbose(Stream, TraceVerbose, "Setting TSmsg to NULL\n"); + msg.TSmsg = NULL; + } + else + { + msg.ReturnValue = return_value; + } + } + // AddArrivedMetadataInfo(Stream, &msg); + ReturnData = CP_distributeDataFromRankZero( + Stream, &msg, Stream->CPInfo->TimestepDistributionFormat, + &free_block); + } + else + { + + STREAM_MUTEX_UNLOCK(Stream); + ReturnData = CP_distributeDataFromRankZero( + Stream, NULL, Stream->CPInfo->CombinedWriterInfoFormat, + &free_block); + STREAM_MUTEX_LOCK(Stream); + } + ret = (SstStatusValue)ReturnData->ReturnValue; + + if (ReturnData->ReturnValue != SstSuccess) + { + if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) && + (ReturnData->TSmsg)) + { + CP_verbose( + Stream, PerRankVerbose, + "SstAdvanceStep installing precious metadata before exiting\n"); + FFSMarshalInstallPreciousMetadata(Stream, ReturnData->TSmsg); + } + else if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) && + (ReturnData->TSmsg)) + { + AddFormatsToMetaMetaInfo(Stream, ReturnData->TSmsg); + AddAttributesToAttrDataList(Stream, ReturnData->TSmsg); + } + + free(free_block); + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStep returning FAILURE\n"); + return ret; + } + MetadataMsg = ReturnData->TSmsg; + + if (ReturnData->CommPatternLockedTimestep != -1) + { + Stream->CommPatternLockedTimestep = + ReturnData->CommPatternLockedTimestep; + Stream->CommPatternLocked = 2; + STREAM_MUTEX_UNLOCK(Stream); + if (Stream->DP_Interface->RSreadPatternLocked) + { + Stream->DP_Interface->RSreadPatternLocked( + &Svcs, Stream->DP_Stream, Stream->CommPatternLockedTimestep); + } + STREAM_MUTEX_LOCK(Stream); + } + if (MetadataMsg) + { + NotifyDPArrivedMetadata(Stream, MetadataMsg); + + Stream->ReaderTimestep = MetadataMsg->Timestep; + if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) + { + CP_verbose(Stream, TraceVerbose, + "Calling install metadata from metadata block %p\n", + MetadataMsg); + FFSMarshalInstallMetadata(Stream, MetadataMsg); + } + else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) + { + AddFormatsToMetaMetaInfo(Stream, MetadataMsg); + AddAttributesToAttrDataList(Stream, MetadataMsg); + } + SstFullMetadata Mdata = malloc(sizeof(struct _SstFullMetadata)); + memset(Mdata, 0, sizeof(struct _SstFullMetadata)); + Mdata->WriterCohortSize = MetadataMsg->CohortSize; + Mdata->WriterMetadata = + malloc(sizeof(Mdata->WriterMetadata[0]) * Mdata->WriterCohortSize); + for (int i = 0; i < Mdata->WriterCohortSize; i++) + { + Mdata->WriterMetadata[i] = &MetadataMsg->Metadata[i]; + } + if (Stream->DP_Interface->TimestepInfoFormats == NULL) + { + // DP didn't provide struct info, no valid data + Mdata->DP_TimestepInfo = NULL; + } + else + { + Mdata->DP_TimestepInfo = MetadataMsg->DP_TimestepInfo; + } + Stream->CurrentWorkingTimestep = MetadataMsg->Timestep; + Mdata->FreeBlock = free_block; + Stream->CurrentMetadata = Mdata; + + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStep returning Success on timestep %d\n", + MetadataMsg->Timestep); + return SstSuccess; + } + CP_verbose(Stream, TraceVerbose, "SstAdvanceStep final return\n"); + return ret; +} + +// SstAdvanceStep is only called by the main program thread. +extern SstStatusValue SstAdvanceStep(SstStream Stream, const float timeout_sec) +{ + + SstStatusValue result; + STREAM_MUTEX_LOCK(Stream); + if (Stream->CurrentMetadata != NULL) + { + if (Stream->CurrentMetadata->FreeBlock) + { + free(Stream->CurrentMetadata->FreeBlock); + } + if (Stream->CurrentMetadata->WriterMetadata) + { + free(Stream->CurrentMetadata->WriterMetadata); + } + free(Stream->CurrentMetadata); + Stream->CurrentMetadata = NULL; + } + + if (Stream->WriterConfigParams->StepDistributionMode == StepsOnDemand) + { + struct _ReaderRequestStepMsg Msg; + CP_verbose(Stream, PerRankVerbose, + "Sending Reader Request Step messages to writer\n"); + memset(&Msg, 0, sizeof(Msg)); + sendOneToEachWriterRank( + Stream, Stream->CPInfo->SharedCM->ReaderRequestStepFormat, &Msg, + &Msg.WSR_Stream); + } + + SstStepMode mode = SstNextAvailable; + if (Stream->ConfigParams->AlwaysProvideLatestTimestep) + { + mode = SstLatestAvailable; + } + if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) + { + result = SstAdvanceStepPeer(Stream, mode, timeout_sec); + } + else + { + result = SstAdvanceStepMin(Stream, mode, timeout_sec); + } + if (result == SstSuccess) + { + Stream->Stats.TimestepsConsumed++; + } + STREAM_MUTEX_UNLOCK(Stream); + return result; +} + +// SstReaderClose is only called by the main program thread and +// needs no locking as it only accesses data set by the main thread +extern void SstReaderClose(SstStream Stream) +{ + /* need to have a reader-side shutdown protocol, but for now, just sleep for + * a little while to makes sure our release message for the last timestep + * got received */ + struct timeval CloseTime, Diff; + struct _ReaderCloseMsg Msg; + /* wait until each reader rank has done SstReaderClose() */ + SMPI_Barrier(Stream->mpiComm); + gettimeofday(&CloseTime, NULL); + timersub(&CloseTime, &Stream->ValidStartTime, &Diff); + memset(&Msg, 0, sizeof(Msg)); + sendOneToEachWriterRank(Stream, Stream->CPInfo->SharedCM->ReaderCloseFormat, + &Msg, &Msg.WSR_Stream); + Stream->Stats.StreamValidTimeSecs = + (double)Diff.tv_usec / 1e6 + Diff.tv_sec; + + if (Stream->CPVerbosityLevel >= (int)SummaryVerbose) + { + DoStreamSummary(Stream); + } + CMusleep(Stream->CPInfo->SharedCM->cm, 100000); + if (Stream->CurrentMetadata != NULL) + { + if (Stream->CurrentMetadata->FreeBlock) + free(Stream->CurrentMetadata->FreeBlock); + if (Stream->CurrentMetadata->WriterMetadata) + free(Stream->CurrentMetadata->WriterMetadata); + free(Stream->CurrentMetadata); + Stream->CurrentMetadata = NULL; + } + STREAM_MUTEX_LOCK(Stream); + for (int i = 0; i < Stream->InternalMetaMetaCount; i++) + { + free(Stream->InternalMetaMetaInfo[i].ID); + free(Stream->InternalMetaMetaInfo[i].BlockData); + } + free(Stream->InternalMetaMetaInfo); + if (Stream->InternalAttrDataInfo) + { + for (int i = 0; i < Stream->InternalAttrDataCount; i++) + { + free(Stream->InternalAttrDataInfo[i].BlockData); + } + free(Stream->InternalAttrDataInfo); + } + STREAM_MUTEX_UNLOCK(Stream); +} + +// SstWaitForCompletion is only called by the main program thread and +// needs no locking +extern SstStatusValue SstWaitForCompletion(SstStream Stream, void *handle) +{ + if (Stream->ConfigParams->ReaderShortCircuitReads) + return SstSuccess; + if (Stream->DP_Interface->waitForCompletion(&Svcs, handle) != 1) + { + return SstFatalError; + } + else + { + return SstSuccess; + } +} diff --git a/source/h5vol/H5VolReadWrite.h b/source/h5vol/H5VolReadWrite.h index a07f3ffe42..2910ae0d87 100644 --- a/source/h5vol/H5VolReadWrite.h +++ b/source/h5vol/H5VolReadWrite.h @@ -1,151 +1,151 @@ -#ifndef ADIOS_VOL_WRITER_H -#define ADIOS_VOL_WRITER_H - -#define H5F_FRIEND /*suppress error about including H5Fpkg */ - -#include "H5VolError.h" -#include "H5VolUtil.h" -#include -#include -#include -#include - -#include - -#include "H5Vol_def.h" - -// -// VL definition -// -static herr_t H5VL_adios2_init(hid_t vipl_id) { return 0; } - -static herr_t H5VL_adios2_term(void) -{ - gExitADIOS2(); - return 0; -} - -extern herr_t H5VL_adios2_begin_read_step(const char *); -extern herr_t H5VL_adios2_begin_write_step(const char *); - -extern herr_t H5VL_adios2_beginstep(const char *engine_name, - adios2_step_mode m); - -extern herr_t H5VL_adios2_endstep(const char *engine_nane); - -static herr_t H5VL_adios2_introspect_opt_query(void *obj, H5VL_subclass_t cls, - int opt_type, - uint64_t *supported) -{ - *supported = 0; - return 0; -} - -static herr_t H5VL_adios2_datatype_close(void *dt, hid_t H5_ATTR_UNUSED dxpl_id, - void H5_ATTR_UNUSED **req) -{ - return 0; -} - -// -// Define H5VOL functions -// -static const H5VL_class_t H5VL_adios2_def = { - H5VL_VERSION, /* Version # of connector, needed for v1.13 */ - (H5VL_class_value_t)H5VL_ADIOS2_VALUE, - H5VL_ADIOS2_NAME, /* name */ - H5VL_ADIOS2_VERSION, /* version of this vol, not as important */ - H5VL_CAP_FLAG_NONE, /* Capability flags for connector */ - H5VL_adios2_init, /* initialize */ - H5VL_adios2_term, /* terminate */ - { - /* info_cls */ - (size_t)0, /* info size */ - NULL, /* info copy */ - NULL, /* info compare */ - NULL, /* info free */ - NULL, /* info to str */ - NULL /* str to info */ - }, - { - NULL, /* get_object */ - NULL, /* get_wrap_ctx */ - NULL, /* wrap_object */ - NULL, /* unwrap_object */ - NULL /* free_wrap_ctx */ - }, - {H5VL_adios2_attr_create, H5VL_adios2_attr_open, H5VL_adios2_attr_read, - H5VL_adios2_attr_write, H5VL_adios2_attr_get, H5VL_adios2_attr_specific, - NULL, // H5VL_adios2_attr_optional, - H5VL_adios2_attr_close}, - { - /* dataset_cls */ - H5VL_adios2_dataset_create, H5VL_adios2_dataset_open, - H5VL_adios2_dataset_read, H5VL_adios2_dataset_write, - H5VL_adios2_dataset_get, /* get properties*/ - NULL, // H5VL_adios2_dataset_specific - NULL, // optional - H5VL_adios2_dataset_close /* close */ - }, - { - /* datatype_cls */ - NULL, // H5VL_adios2_datatype_commit, /* commit */ - NULL, // H5VL_adios2_datatype_open, /* open */ - NULL, // H5VL_adios2_datatype_get, /* get_size */ - NULL, // H5VL_adios2_datatype_specific, - NULL, // H5VL_adios2_datatype_optional, - H5VL_adios2_datatype_close /* close */ - }, - {H5VL_adios2_file_create, H5VL_adios2_file_open, - NULL, // H5VL_adios2_file_get, - H5VL_adios2_file_specific, - NULL, // H5VL_adios2_file_optional, - H5VL_adios2_file_close}, - {H5VL_adios2_group_create, H5VL_adios2_group_open, H5VL_adios2_group_get, - NULL, NULL, H5VL_adios2_group_close}, - { - NULL, // H5VL_adios2_link_create, - NULL, // H5VL_adios2_link_copy, - NULL, // H5VL_adios2_link_move, - H5VL_adios2_link_get, H5VL_adios2_link_specific, - NULL // H5VL_adios2_link_remove - }, - { - H5VL_adios2_object_open, - NULL, // H5VL_adios2_object_copy, - H5VL_adios2_object_get, - NULL, // H5VL_adios2_object_specific, - NULL // H5VL_adios2_object_optional, - }, - { - /* introspect_cls */ - NULL, // H5VL_pass_through_introspect_get_conn_cls, /* get_conn_cls */ - NULL, /* get_cap_flags */ - H5VL_adios2_introspect_opt_query, /* opt_query */ - }, - { - /* request_cls */ - NULL, /* wait */ - NULL, /* notify */ - NULL, /* cancel */ - NULL, /* specific */ - NULL, /* optional */ - NULL /* free */ - }, - { - /* blob_cls */ - NULL, /* put */ - NULL, /* get */ - NULL, /* specific */ - NULL /* optional */ - }, - { - /* token_cls */ - NULL, /* cmp */ - NULL, /* to_str */ - NULL /* from_str */ - }, - NULL /*/optional*/ -}; - -#endif // ADIOS_VOL_WRITER_H +#ifndef ADIOS_VOL_WRITER_H +#define ADIOS_VOL_WRITER_H + +#define H5F_FRIEND /*suppress error about including H5Fpkg */ + +#include "H5VolError.h" +#include "H5VolUtil.h" +#include +#include +#include +#include + +#include + +#include "H5Vol_def.h" + +// +// VL definition +// +static herr_t H5VL_adios2_init(hid_t vipl_id) { return 0; } + +static herr_t H5VL_adios2_term(void) +{ + gExitADIOS2(); + return 0; +} + +extern herr_t H5VL_adios2_begin_read_step(const char *); +extern herr_t H5VL_adios2_begin_write_step(const char *); + +extern herr_t H5VL_adios2_beginstep(const char *engine_name, + adios2_step_mode m); + +extern herr_t H5VL_adios2_endstep(const char *engine_nane); + +static herr_t H5VL_adios2_introspect_opt_query(void *obj, H5VL_subclass_t cls, + int opt_type, + uint64_t *supported) +{ + *supported = 0; + return 0; +} + +static herr_t H5VL_adios2_datatype_close(void *dt, hid_t H5_ATTR_UNUSED dxpl_id, + void H5_ATTR_UNUSED **req) +{ + return 0; +} + +// +// Define H5VOL functions +// +static const H5VL_class_t H5VL_adios2_def = { + H5VL_VERSION, /* Version # of connector, needed for v1.13 */ + (H5VL_class_value_t)H5VL_ADIOS2_VALUE, + H5VL_ADIOS2_NAME, /* name */ + H5VL_ADIOS2_VERSION, /* version of this vol, not as important */ + H5VL_CAP_FLAG_NONE, /* Capability flags for connector */ + H5VL_adios2_init, /* initialize */ + H5VL_adios2_term, /* terminate */ + { + /* info_cls */ + (size_t)0, /* info size */ + NULL, /* info copy */ + NULL, /* info compare */ + NULL, /* info free */ + NULL, /* info to str */ + NULL /* str to info */ + }, + { + NULL, /* get_object */ + NULL, /* get_wrap_ctx */ + NULL, /* wrap_object */ + NULL, /* unwrap_object */ + NULL /* free_wrap_ctx */ + }, + {H5VL_adios2_attr_create, H5VL_adios2_attr_open, H5VL_adios2_attr_read, + H5VL_adios2_attr_write, H5VL_adios2_attr_get, H5VL_adios2_attr_specific, + NULL, // H5VL_adios2_attr_optional, + H5VL_adios2_attr_close}, + { + /* dataset_cls */ + H5VL_adios2_dataset_create, H5VL_adios2_dataset_open, + H5VL_adios2_dataset_read, H5VL_adios2_dataset_write, + H5VL_adios2_dataset_get, /* get properties*/ + NULL, // H5VL_adios2_dataset_specific + NULL, // optional + H5VL_adios2_dataset_close /* close */ + }, + { + /* datatype_cls */ + NULL, // H5VL_adios2_datatype_commit, /* commit */ + NULL, // H5VL_adios2_datatype_open, /* open */ + NULL, // H5VL_adios2_datatype_get, /* get_size */ + NULL, // H5VL_adios2_datatype_specific, + NULL, // H5VL_adios2_datatype_optional, + H5VL_adios2_datatype_close /* close */ + }, + {H5VL_adios2_file_create, H5VL_adios2_file_open, + NULL, // H5VL_adios2_file_get, + H5VL_adios2_file_specific, + NULL, // H5VL_adios2_file_optional, + H5VL_adios2_file_close}, + {H5VL_adios2_group_create, H5VL_adios2_group_open, H5VL_adios2_group_get, + NULL, NULL, H5VL_adios2_group_close}, + { + NULL, // H5VL_adios2_link_create, + NULL, // H5VL_adios2_link_copy, + NULL, // H5VL_adios2_link_move, + H5VL_adios2_link_get, H5VL_adios2_link_specific, + NULL // H5VL_adios2_link_remove + }, + { + H5VL_adios2_object_open, + NULL, // H5VL_adios2_object_copy, + H5VL_adios2_object_get, + NULL, // H5VL_adios2_object_specific, + NULL // H5VL_adios2_object_optional, + }, + { + /* introspect_cls */ + NULL, // H5VL_pass_through_introspect_get_conn_cls, /* get_conn_cls */ + NULL, /* get_cap_flags */ + H5VL_adios2_introspect_opt_query, /* opt_query */ + }, + { + /* request_cls */ + NULL, /* wait */ + NULL, /* notify */ + NULL, /* cancel */ + NULL, /* specific */ + NULL, /* optional */ + NULL /* free */ + }, + { + /* blob_cls */ + NULL, /* put */ + NULL, /* get */ + NULL, /* specific */ + NULL /* optional */ + }, + { + /* token_cls */ + NULL, /* cmp */ + NULL, /* to_str */ + NULL /* from_str */ + }, + NULL /*/optional*/ +}; + +#endif // ADIOS_VOL_WRITER_H From bc197a4985295b34f81bc03a09bb0a293c934d5d Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Tue, 18 Jul 2023 18:21:12 -0400 Subject: [PATCH 036/183] ci,mpich: disable Sz|Zfp flaky tests --- scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-mpich.cmake | 3 +++ 1 file changed, 3 insertions(+) diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-mpich.cmake b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-mpich.cmake index 3e147d94ef..a51bfe97a8 100644 --- a/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-mpich.cmake +++ b/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-mpich.cmake @@ -34,6 +34,9 @@ CMAKE_Fortran_FLAGS:STRING=-Wall MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} ") +set(CTEST_TEST_ARGS + EXCLUDE "Engine.BPEngineTest.SzComplex.MPI|Engine.BPEngineTest.ZfpComplex.MPI") + set(CTEST_CMAKE_GENERATOR "Ninja") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) From 3999f5d46c213dbd3700b81ce247a6259504fe0a Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 20 Jul 2023 12:15:39 +0000 Subject: [PATCH 037/183] build(deps): bump pygments from 2.14.0 to 2.15.0 in /docs Bumps [pygments](https://github.com/pygments/pygments) from 2.14.0 to 2.15.0. - [Release notes](https://github.com/pygments/pygments/releases) - [Changelog](https://github.com/pygments/pygments/blob/master/CHANGES) - [Commits](https://github.com/pygments/pygments/compare/2.14.0...2.15.0) --- updated-dependencies: - dependency-name: pygments dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- docs/requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/requirements.txt b/docs/requirements.txt index 8c666d4748..37fb7a3da5 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -21,7 +21,7 @@ packaging==22.0 Pillow==9.4.0 pip==22.3.1 pycparser==2.21 -Pygments==2.14.0 +Pygments==2.15.0 pyOpenSSL==23.0.0 PySocks==1.7.1 pytz==2022.7 From fdc6a3c28b36257d3f3e6fa3046043d44a777b26 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Wed, 12 Jul 2023 15:20:07 -0400 Subject: [PATCH 038/183] cmake,ci: removed unused files - Merged cmake-v2/image-v2 to cmake/image folder --- .shellcheck_exclude_paths | 15 --- ReadMe.md | 2 - scripts/appveyor/appveyor_ninja.cmake | 30 ----- scripts/ci/azure/linux-setup.sh | 8 -- scripts/ci/azure/macos-setup.sh | 40 ------ scripts/ci/azure/run.sh | 83 ------------- ...windows-import-visualstudioenvironment.ps1 | 115 ------------------ 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| 98 --------------- .../nightly/valgrind-suppressions.txt | 63 ---------- scripts/travis/run-docker.sh | 54 -------- scripts/travis/run-format.sh | 47 ------- scripts/travis/run.sh | 32 ----- 112 files changed, 5 insertions(+), 2867 deletions(-) delete mode 100644 scripts/appveyor/appveyor_ninja.cmake delete mode 100755 scripts/ci/azure/linux-setup.sh delete mode 100755 scripts/ci/azure/macos-setup.sh delete mode 100755 scripts/ci/azure/run.sh delete mode 100644 scripts/ci/azure/windows-import-visualstudioenvironment.ps1 delete mode 100755 scripts/ci/azure/windows-setup.ps1 delete mode 100644 scripts/ci/cmake-v2/ci-common.cmake rename scripts/ci/{cmake-v2 => cmake}/ci-ascent-common.cmake (100%) rename scripts/ci/{cmake-v2 => cmake}/ci-ascent-cuda.cmake (100%) rename scripts/ci/{cmake-v2 => cmake}/ci-ascent-kokkos-cuda.cmake (100%) rename scripts/ci/{cmake-v2 => cmake}/ci-ascent-nvhpc.cmake (100%) rename scripts/ci/{cmake-v2 => cmake}/ci-ascent-xl.cmake (100%) rename 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100644 scripts/dashboard/nightly/summitdev-pgi-nompi.cmake delete mode 100644 scripts/dashboard/nightly/summitdev-pgi-spectrum.cmake delete mode 100755 scripts/dashboard/nightly/summitdev-spectrum-tests.lsf delete mode 100644 scripts/dashboard/nightly/summitdev-xl-nompi.cmake delete mode 100644 scripts/dashboard/nightly/summitdev-xl-spectrum.cmake delete mode 100755 scripts/dashboard/nightly/summitdev.sh delete mode 100755 scripts/dashboard/nightly/valgrind-suppressions.txt delete mode 100755 scripts/travis/run-docker.sh delete mode 100755 scripts/travis/run-format.sh delete mode 100755 scripts/travis/run.sh diff --git a/.shellcheck_exclude_paths b/.shellcheck_exclude_paths index 43d3930073..08345abc0e 100644 --- a/.shellcheck_exclude_paths +++ b/.shellcheck_exclude_paths @@ -1,6 +1,3 @@ -scripts/ci/azure/linux-setup.sh -scripts/ci/azure/macos-setup.sh -scripts/ci/azure/run.sh scripts/ci/circle/postCDashStatus.sh scripts/ci/circle/run.sh scripts/ci/gh-actions/check-branch-name.sh @@ -8,18 +5,9 @@ scripts/ci/gh-actions/get-changed-files.sh scripts/ci/gh-actions/linux-setup.sh scripts/ci/gh-actions/macos-setup.sh scripts/ci/gh-actions/run.sh -scripts/ci/images-v2/build-el8.sh -scripts/ci/images-v2/build-ubuntu.sh -scripts/ci/images/build-native-images.sh -scripts/ci/images/emu-el7/entrypoint.sh -scripts/ci/images/emu-el7/qemu-binfmt-conf.sh -scripts/ci/images/emu-el7/register.sh scripts/ci/scripts/github-prs-to-gitlab.sh scripts/ci/scripts/run-clang-format.sh scripts/ci/scripts/run-flake8.sh -scripts/dashboard/nightly/aaargh.sh -scripts/dashboard/nightly/cori.sh -scripts/dashboard/nightly/summitdev.sh scripts/developer/git/setup-aliases scripts/developer/git/setup-hooks scripts/developer/git/setup-remotes @@ -28,6 +16,3 @@ scripts/developer/setup.sh scripts/docker/setup-user.sh scripts/runconf/runconf.sh scripts/runconf/runconf_olcf.sh -scripts/travis/run-docker.sh -scripts/travis/run-format.sh -scripts/travis/run.sh diff --git a/ReadMe.md b/ReadMe.md index f89f815133..695d50374d 100644 --- a/ReadMe.md +++ b/ReadMe.md @@ -6,8 +6,6 @@ [![Conda Version](https://img.shields.io/conda/vn/conda-forge/adios2)](https://anaconda.org/conda-forge/adios2) [![Circle CI](https://circleci.com/gh/ornladios/ADIOS2.svg?style=shield)](https://circleci.com/gh/ornladios/ADIOS2) -[![Travis CI](https://api.travis-ci.com/ornladios/ADIOS2.svg)](https://travis-ci.com/ornladios/ADIOS2) -[![AppVeyor CI](https://ci.appveyor.com/api/projects/status/0s2a3qp57hgbvlhj?svg=true)](https://ci.appveyor.com/project/ornladios/adios2) [![Coverity Scan Build Status](https://scan.coverity.com/projects/11116/badge.svg)](https://scan.coverity.com/projects/ornladios-adios2) diff --git a/scripts/appveyor/appveyor_ninja.cmake b/scripts/appveyor/appveyor_ninja.cmake deleted file mode 100644 index 38d4b55cc4..0000000000 --- a/scripts/appveyor/appveyor_ninja.cmake +++ /dev/null @@ -1,30 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "AppVeyor") -set(CTEST_BUILD_CONFIGURATION Release) -set(CTEST_CMAKE_GENERATOR "Ninja") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 4) - -set(dashboard_model Experimental) -set(dashboard_binary_name "build_ninja") -set(dashboard_track "Continuous Integration") - -set(CTEST_GIT_COMMAND "git.exe") -set(CTEST_UPDATE_VERSION_ONLY TRUE) -set(CTEST_SOURCE_DIRECTORY "$ENV{APPVEYOR_BUILD_FOLDER}") -set(CTEST_DASHBOARD_ROOT "C:/projects/adios2build") - -set(ENV{CFLAGS} /WX) -set(ENV{CXXFLAGS} /WX) - -set(dashboard_cache " -ADIOS2_USE_BZip2:STRING=OFF -ADIOS2_USE_DataMan:STRING=OFF -ADIOS2_USE_Fortran:STRING=OFF -ADIOS2_USE_HDF5:STRING=OFF -ADIOS2_USE_MPI:STRING=OFF -ADIOS2_USE_Python:STRING=OFF -ADIOS2_USE_ZFP:STRING=OFF -ADIOS2_USE_ZeroMQ:STRING=OFF -") - -include(${CMAKE_CURRENT_LIST_DIR}/../dashboard/adios_common.cmake) diff --git a/scripts/ci/azure/linux-setup.sh b/scripts/ci/azure/linux-setup.sh deleted file mode 100755 index 897fe2c04d..0000000000 --- a/scripts/ci/azure/linux-setup.sh +++ /dev/null @@ -1,8 +0,0 @@ -#!/bin/bash - -if [[ "$SYSTEM_JOBNAME" =~ .*intel.* ]] -then - echo "Setting up compiler license" - mkdir -p /opt/intel/licenses - echo "${INTEL_LICENSE_FILE_CONTENT}" | base64 -d | sudo tee /opt/intel/licenses/license.lic > /dev/null -fi diff --git a/scripts/ci/azure/macos-setup.sh b/scripts/ci/azure/macos-setup.sh deleted file mode 100755 index 6e7cd16435..0000000000 --- a/scripts/ci/azure/macos-setup.sh +++ /dev/null @@ -1,40 +0,0 @@ -#!/bin/bash - -set -x - -echo "Setting up default XCode version" -case "$SYSTEM_JOBNAME" in - *xcode1211*) - sudo xcode-select --switch /Applications/Xcode_12.1.1.app - ;; - *xcode131*) - sudo xcode-select --switch /Applications/Xcode_13.1.app - ;; - *) - echo " Unknown Xcode mapping. Using defaults." - ;; -esac - -echo "Removing all existing brew package and update the formula" -brew remove --force --ignore-dependencies $(brew list --formula) -brew update - -echo "Installing GCC" -brew install gcc - -echo "Installing blosc compression" -brew install c-blosc - -echo "Installing python and friends" -brew install python numpy -brew link --overwrite python -brew link --overwrite numpy - -echo "Installing CMake and Ninja" -brew install cmake ninja - -if [[ "$SYSTEM_JOBNAME" =~ .*openmpi.* ]] -then - echo "Installing OpenMPI" - brew install openmpi -fi diff --git a/scripts/ci/azure/run.sh b/scripts/ci/azure/run.sh deleted file mode 100755 index 81eff1f72b..0000000000 --- a/scripts/ci/azure/run.sh +++ /dev/null @@ -1,83 +0,0 @@ -#!/bin/bash --login - -joblabel="${SYSTEM_JOBNAME//_/-}" - -export CI_SITE_NAME="Azure Pipelines" -if [ -n "${SYSTEM_PULLREQUEST_PULLREQUESTNUMBER}" ] -then - export CI_BUILD_NAME="pr${SYSTEM_PULLREQUEST_PULLREQUESTNUMBER}_${SYSTEM_PULLREQUEST_SOURCEBRANCH}_${joblabel}" - export CI_COMMIT_REF=${SYSTEM_PULLREQUEST_SOURCECOMMITID} -else - export CI_BUILD_NAME="${BUILD_SOURCEBRANCHNAME}_${joblabel}" - export CI_COMMIT_REF=${BUILD_SOURCEVERSION} -fi -if [[ "${AGENT_OS}" =~ "Windows" ]] -then - export CI_ROOT_DIR="${PIPELINE_WORKSPACE//\\//}" - export CI_SOURCE_DIR="${BUILD_SOURCESDIRECTORY//\\//}" - export CI_BIN_DIR="${BUILD_BINARIESDIRECTORY//\\//}/${joblabel}" -else - export CI_ROOT_DIR="${PIPELINE_WORKSPACE}" - export CI_SOURCE_DIR="${BUILD_SOURCESDIRECTORY}" - export CI_BIN_DIR="${BUILD_BINARIESDIRECTORY}/${joblabel}" -fi - - -STEP=$1 -CTEST_SCRIPT=scripts/ci/cmake/ci-${joblabel}.cmake - -# Update and Test steps enable an extra step -CTEST_STEP_ARGS="" -case ${STEP} in - update) CTEST_STEP_ARGS="${CTEST_STEP_ARGS} -Ddashboard_do_checkout=ON" ;; - test) CTEST_STEP_ARGS="${CTEST_STEP_ARGS} -Ddashboard_do_end=ON" ;; -esac -CTEST_STEP_ARGS="${CTEST_STEP_ARGS} -Ddashboard_do_${STEP}=ON" - -if [ -x /opt/cmake/bin/ctest ] -then - CTEST=/opt/cmake/bin/ctest -elif [ -s /Applications/CMake.app/Contents/bin/ctest ] -then - CTEST=/Applications/CMake.app/Contents/bin/ctest -else - CTEST=ctest -fi - -# macOS tmpdir issues -# See https://github.com/open-mpi/ompi/issues/6518 -if [[ "{AGENT_OS}" =~ "Darwin" ]] -then - export TMPDIR=/tmp -fi - -# OpenMPI specific setup -if [[ "${SYSTEM_JOBNAME}" =~ openmpi ]] -then - # Workaround to quiet some warnings from OpenMPI - export OMPI_MCA_btl_base_warn_component_unused=0 - export OMPI_MCA_btl_vader_single_copy_mechanism=none - - # https://github.com/open-mpi/ompi/issues/6518 - export OMPI_MCA_btl=self,tcp - - # Enable overscription in OpenMPI - export OMPI_MCA_rmaps_base_oversubscribe=1 - export OMPI_MCA_hwloc_base_binding_policy=none -fi - -# Make sure staging tests use localhost -export ADIOS2_IP=127.0.0.1 - -echo "**********Env Begin**********" -env | sort -echo "**********Env End************" - -echo "**********CTest Begin**********" -${CTEST} --version -echo ${CTEST} -VV -S ${CTEST_SCRIPT} -Ddashboard_full=OFF ${CTEST_STEP_ARGS} -${CTEST} -VV -S ${CTEST_SCRIPT} -Ddashboard_full=OFF ${CTEST_STEP_ARGS} -RET=$? -echo "**********CTest End************" - -exit ${RET} diff --git a/scripts/ci/azure/windows-import-visualstudioenvironment.ps1 b/scripts/ci/azure/windows-import-visualstudioenvironment.ps1 deleted file mode 100644 index 91e0d7e980..0000000000 --- a/scripts/ci/azure/windows-import-visualstudioenvironment.ps1 +++ /dev/null @@ -1,115 +0,0 @@ -#requires -version 5.0 -############################################################################### -# WintellectPowerShell Module -# Copyright (c) 2010-2017 - John Robbins/Wintellect -# -# Do whatever you want with this module, but please do give credit. -############################################################################### - -# Always make sure all variables are defined and all best practices are -# followed. -Set-StrictMode -version Latest - -############################################################################### -# Helper funcitons pulled in from other modules -############################################################################### - -function Invoke-CmdScript -{ -<# -.SYNOPSIS -Executes the specified command script and imports the environment into current -PowerShell instance. - -.DESCRIPTION -Running development tools at the command line in PowerShell can be a hassle since -they rely on environment varibles and those are set through batch files. This -cmdlet runs those batch files and imports any set environment variables into -the running PowerShell instance. - -.PARAMETER script -The required batch file to run. - -.PARAMETER parameters -The optional parameters to pass to the batch file. - -.NOTES -The original script is by Lee Holmes. I updated the script to make removing environment variables -work. - -.LINK -http://www.leeholmes.com/blog/2006/05/11/nothing-solves-everything-%e2%80%93-powershell-and-other-technologies/ -https://github.com/Wintellect/WintellectPowerShell -#> - param - ( - [Parameter(Mandatory=$true, - Position=0, - HelpMessage="Please specify the command script to execute.")] - [string] $script, - [Parameter(Position=1)] - [string] $parameters="" - ) - - # Save off the current environment variables in case there's an issue - $oldVars = $(Get-ChildItem -Path env:\) - $tempFile = [IO.Path]::GetTempFileName() - - try - { - Write-Host "Debug: $script $parameters" - ## Store the output of cmd.exe. We also ask cmd.exe to output - ## the environment table after the batch file completes - cmd /c " `"$script`" $parameters && set > `"$tempFile`" " - - if ($LASTEXITCODE -ne 0) - { - throw "Error executing CMD.EXE: $LASTEXITCODE" - } - - # Before we delete the environment variables get the output into a string - # array. - $vars = Get-Content -Path $tempFile - - # Clear out all current environment variables in PowerShell. - Get-ChildItem -Path env:\ | Foreach-Object { - set-item -force -path "ENV:\$($_.Name)" -value "" - } - - - ## Go through the environment variables in the temp file. - ## For each of them, set the variable in our local environment. - $vars | Foreach-Object { - if($_ -match "^(.*?)=(.*)$") - { - Set-Item -Path Env:$($matches[1]) -Value "$($matches[2])" - } - } - } - catch - { - "ERROR: $_" - - # Any problems, restore the old environment variables. - $oldVars | ForEach-Object { Set-Item -Force -Path "ENV:\$($_.Name)" -value $_.Value } - } - finally - { - Remove-Item -Path $tempFile -Force -ErrorAction SilentlyContinue - } -} - - - - -############################################################################### -# Public Cmdlets -############################################################################### -# Note that this uses none of the logic from Wintellect's -# Import-VisualStudioEnvironment Cmdlet -function Import-VisualStudioEnvironment -{ - Write-Host "Setting up Visual Studio $args" - $vsdevcmd = "C:\Program Files (x86)\Microsoft Visual Studio\$args\Enterprise\Common7\Tools\VsDevCmd.bat" - Invoke-CmdScript $vsdevcmd -parameters "-no_logo -arch=x64 -host_arch=x64" -} diff --git a/scripts/ci/azure/windows-setup.ps1 b/scripts/ci/azure/windows-setup.ps1 deleted file mode 100755 index 4314ccc143..0000000000 --- a/scripts/ci/azure/windows-setup.ps1 +++ /dev/null @@ -1,71 +0,0 @@ -$ErrorActionPreference = "Stop" -$BaseDir = Split-Path -Path $MyInvocation.MyCommand.Definition -Parent -$WebClient = New-Object System.Net.WebClient - -# The visual studio import uses the Invoke-CmdScript from Wintellect: -# https://github.com/Wintellect/WintellectPowerShell/blob/master/Code/Internal.ps1 -. ("$BaseDir\windows-import-visualstudioenvironment.ps1") - -################################################################################ - -function main () { - $jobName = $(Get-Item -Path "Env:SYSTEM_JOBNAME").Value - Write-Host "##vso[task.setvariable variable=CC;]cl" - Write-Host "##vso[task.setvariable variable=CXX;]cl" - - # Setup the MSVC environment - Write-Host "Setting up Visual Studio environment" - if($jobName -match "vs(20[0-9][0-9]).*") { - Import-VisualStudioEnvironment $($matches[1]) - $envlist = @("PATH", "INCLUDE", "LIB", "LIBPATH") - foreach ($variable in $envlist) { - $value = $(Get-Item -Path Env:$variable).Value - if ($value) { - Write-Host "##vso[task.setvariable variable=$variable;]$value" - } - } - } - - # Install CMake 3.17.2 - Write-Host "Downloading CMake" - $WebClient.DownloadFile("https://github.com/Kitware/CMake/releases/download/v3.17.2/cmake-3.17.2-win64-x64.msi", "cmake-3.17.2-win64-x64.msi") - Write-Host "Installing CMake" - Start-Process -FilePath "msiexec.exe" -ArgumentList "/qb","/i","cmake-3.17.2-win64-x64.msi","ADD_CMAKE_TO_PATH=System" -Wait - - # Install Ninja - if($jobName -match "ninja") { - Write-Host "Installing Ninja" - choco install -y ninja - } - - # Install MS-MPI - if($jobName -match "msmpi") { - Write-Host "Downloading MS-MPI Runtime" - $WebClient.DownloadFile("https://github.com/microsoft/Microsoft-MPI/releases/download/v10.1.1/msmpisetup.exe", "msmpisetup.exe") - Write-Host "Installing MS-MPI Runtime" - Start-Process "msmpisetup.exe" -ArgumentList "-unattend" -Wait -NoNewWindow - - Write-Host "Downloading MS-MPI SDK" - $WebClient.DownloadFile("https://github.com/microsoft/Microsoft-MPI/releases/download/v10.1.1/msmpisdk.msi", "msmpisdk.msi") - Write-Host "Installing MS-MPI SDK" - Start-Process "msiexec.exe" -ArgumentList "/qb","/i","msmpisdk.msi" -Wait - - Write-Host "##vso[task.setvariable variable=MSMPI_BIN;]C:\Program Files\Microsoft MPI\Bin" - Write-Host "##vso[task.setvariable variable=MSMPI_INC;]C:\Program Files (x86)\Microsoft SDKs\MPI\Include" - Write-Host "##vso[task.setvariable variable=MSMPI_LIB32;]C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x86" - Write-Host "##vso[task.setvariable variable=MSMPI_LIB64;]C:\Program Files (x86)\Microsoft SDKs\MPI\Lib\x64" - } - - # Install Numpy - #Write-Host "Installing NumPy" - #choco install -y numpy - - # Install mpi4py - #if($jobName -match "msmpi") { - # Write-Host "Installing mpi4py" - # pip install mpi4py - #} -} - -main - diff --git a/scripts/ci/cmake-v2/ci-common.cmake b/scripts/ci/cmake-v2/ci-common.cmake deleted file mode 100644 index 033692ad98..0000000000 --- a/scripts/ci/cmake-v2/ci-common.cmake +++ /dev/null @@ -1,62 +0,0 @@ -if(POLICY CMP0057) - cmake_policy(SET CMP0057 NEW) -endif() - -if(NOT CTEST_BUILD_CONFIGURATION) - set(CTEST_BUILD_CONFIGURATION Debug) -endif() - -if(NOT DEFINED NCPUS) - include(ProcessorCount) - ProcessorCount(NCPUS) -endif() -math(EXPR N2CPUS "${NCPUS}*2") -if(NOT CTEST_BUILD_FLAGS) - if(CTEST_CMAKE_GENERATOR STREQUAL "Unix Makefiles") - set(CTEST_BUILD_FLAGS "-k -j${N2CPUS}") - elseif(CTEST_CMAKE_GENERATOR STREQUAL "Ninja") - set(CTEST_BUILD_FLAGS "-j${N2CPUS}") - endif() -endif() -if(NOT PARALLEL_LEVEL IN_LIST CTEST_TEST_ARGS) - list(APPEND CTEST_TEST_ARGS PARALLEL_LEVEL ${N2CPUS}) -endif() - -if(NOT dashboard_model) - set(dashboard_model Experimental) -endif() -if(NOT dashboard_binary_name) - set(dashboard_binary_name "build") -endif() -if(NOT dashboard_track) - set(dashboard_track "Continuous Integration") -endif() -find_program(CTEST_GIT_COMMAND git) -if(NOT "$ENV{CI_COMMIT_REF}" STREQUAL "") - set(dashboard_git_branch "$ENV{CI_COMMIT_REF}") - set(CTEST_UPDATE_VERSION_ONLY ON) -endif() -if(NOT "$ENV{CI_SITE_NAME}" STREQUAL "") - set(CTEST_SITE "$ENV{CI_SITE_NAME}") -endif() -if(NOT "$ENV{CI_BUILD_NAME}" STREQUAL "") - set(CTEST_BUILD_NAME "$ENV{CI_BUILD_NAME}") -endif() -if(NOT "$ENV{CI_ROOT_DIR}" STREQUAL "") - set(CTEST_DASHBOARD_ROOT "$ENV{CI_ROOT_DIR}") -endif() -if(NOT "$ENV{CI_SOURCE_DIR}" STREQUAL "") - set(CTEST_SOURCE_DIRECTORY "$ENV{CI_SOURCE_DIR}") -endif() -if(NOT "$ENV{CI_BIN_DIR}" STREQUAL "") - set(CTEST_BINARY_DIRECTORY "$ENV{CI_BIN_DIR}") -endif() - -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -set(CTEST_UPDATE_COMMAND ${CTEST_GIT_COMMAND}) -set(CTEST_UPTATE_TYPE git) -set(CTEST_UPDATE_VERSION_ONLY TRUE) -include(${CMAKE_CURRENT_LIST_DIR}/../../dashboard/adios_common.cmake) -if(ctest_build_num_warnings GREATER 0) - message(FATAL_ERROR "Found ${ctest_build_num_warnings} warnings.") -endif() diff --git a/scripts/ci/cmake-v2/ci-ascent-common.cmake b/scripts/ci/cmake/ci-ascent-common.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ascent-common.cmake rename to scripts/ci/cmake/ci-ascent-common.cmake diff --git a/scripts/ci/cmake-v2/ci-ascent-cuda.cmake b/scripts/ci/cmake/ci-ascent-cuda.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ascent-cuda.cmake rename to scripts/ci/cmake/ci-ascent-cuda.cmake diff --git a/scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake b/scripts/ci/cmake/ci-ascent-kokkos-cuda.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ascent-kokkos-cuda.cmake rename to scripts/ci/cmake/ci-ascent-kokkos-cuda.cmake diff --git a/scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake b/scripts/ci/cmake/ci-ascent-nvhpc.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ascent-nvhpc.cmake rename to scripts/ci/cmake/ci-ascent-nvhpc.cmake diff --git a/scripts/ci/cmake-v2/ci-ascent-xl.cmake b/scripts/ci/cmake/ci-ascent-xl.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ascent-xl.cmake rename to scripts/ci/cmake/ci-ascent-xl.cmake diff --git a/scripts/ci/cmake/ci-common.cmake b/scripts/ci/cmake/ci-common.cmake index dc03b2febc..033692ad98 100644 --- a/scripts/ci/cmake/ci-common.cmake +++ b/scripts/ci/cmake/ci-common.cmake @@ -15,7 +15,7 @@ if(NOT CTEST_BUILD_FLAGS) if(CTEST_CMAKE_GENERATOR STREQUAL "Unix Makefiles") set(CTEST_BUILD_FLAGS "-k -j${N2CPUS}") elseif(CTEST_CMAKE_GENERATOR STREQUAL "Ninja") - set(CTEST_BUILD_FLAGS "-k0 -j${N2CPUS}") + set(CTEST_BUILD_FLAGS "-j${N2CPUS}") endif() endif() if(NOT PARALLEL_LEVEL IN_LIST CTEST_TEST_ARGS) diff --git a/scripts/ci/cmake-v2/ci-crusher-cray.cmake b/scripts/ci/cmake/ci-crusher-cray.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-crusher-cray.cmake rename to scripts/ci/cmake/ci-crusher-cray.cmake diff --git a/scripts/ci/cmake-v2/ci-crusher-kokkos-hip.cmake b/scripts/ci/cmake/ci-crusher-kokkos-hip.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-crusher-kokkos-hip.cmake rename to scripts/ci/cmake/ci-crusher-kokkos-hip.cmake diff --git a/scripts/ci/cmake/ci-debian-sid-openmpi.cmake b/scripts/ci/cmake/ci-debian-sid-openmpi.cmake deleted file mode 100644 index c401e70029..0000000000 --- a/scripts/ci/cmake/ci-debian-sid-openmpi.cmake +++ /dev/null @@ -1,50 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -execute_process( - COMMAND /usr/bin/dpkg-architecture -q DEB_HOST_GNU_TYPE - OUTPUT_VARIABLE arch - OUTPUT_STRIP_TRAILING_WHITESPACE -) - -set(ENV{CFLAGS} "-Wno-deprecated -Wno-deprecated-declarations") -set(ENV{CXXFLAGS} "-Wno-deprecated -Wno-deprecated-declarations") - -set(dashboard_cache " -ADIOS2_USE_EXTERNAL_DEPENDENCIES:BOOL=ON -ADIOS2_USE_EXTERNAL_EVPATH:BOOL=OFF -ADIOS2_USE_EXTERNAL_NLOHMANN_JSON:BOOL=OFF -ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=ON -ADIOS2_USE_MPI:BOOL=ON -ADIOS2_USE_PNG:BOOL=ON -ADIOS2_USE_Python:BOOL=ON -ADIOS2_USE_SSC:BOOL=ON -ADIOS2_USE_SST:BOOL=ON -ADIOS2_USE_ZeroMQ:BOOL=ON -ADIOS2_LIBRARY_SUFFIX:STRING=_openmpi -ADIOS2_EXECUTABLE_SUFFIX:STRING=.openmpi -CMAKE_INSTALL_PREFIX:STRING=/usr -CMAKE_INSTALL_LIBDIR:STRING=lib/${arch} -CMAKE_INSTALL_CMAKEDIR:STRING=lib/${arch}/cmake/adios/openmpi - -CMAKE_Fortran_FLAGS:STRING=-Wall - -MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe -MPI_C_COMPILER:FILEPATH=/usr/bin/mpicc.openmpi -MPI_CXX_COMPILER:FILEPATH=/usr/bin/mpic++.openmpi -MPI_Fortran_COMPILER:FILEPATH=/usr/bin/mpif77.openmpi -MPIEXEC_EXECUTABLE:FILEPATH=/usr/bin/mpiexec.openmpi -HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5pcc.openmpi -") - -set(CTEST_TEST_ARGS - PARALLEL_LEVEL 1 - - # Unclear why this test currently dies. Disabling until it can be addressed. - EXCLUDE "Engine.SSC.SscEngineTest.TestSsc7d.MPI" -) -set(CTEST_CMAKE_GENERATOR "Ninja") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-debian-sid.cmake b/scripts/ci/cmake/ci-debian-sid.cmake deleted file mode 100644 index 2204a0a406..0000000000 --- a/scripts/ci/cmake/ci-debian-sid.cmake +++ /dev/null @@ -1,39 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -execute_process( - COMMAND /usr/bin/dpkg-architecture -q DEB_HOST_GNU_TYPE - OUTPUT_VARIABLE arch - OUTPUT_STRIP_TRAILING_WHITESPACE -) - -set(ENV{CFLAGS} "-Wno-deprecated -Wno-deprecated-declarations") -set(ENV{CXXFLAGS} "-Wno-deprecated -Wno-deprecated-declarations") - -set(dashboard_cache " -ADIOS2_USE_EXTERNAL_DEPENDENCIES:BOOL=ON -ADIOS2_USE_EXTERNAL_EVPATH:BOOL=OFF -ADIOS2_USE_EXTERNAL_NLOHMANN_JSON:BOOL=OFF -ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=ON -ADIOS2_USE_MPI:BOOL=OFF -ADIOS2_USE_PNG:BOOL=ON -ADIOS2_USE_Python:BOOL=ON -ADIOS2_USE_SSC:BOOL=ON -ADIOS2_USE_SST:BOOL=ON -ADIOS2_USE_ZeroMQ:BOOL=ON -ADIOS2_LIBRARY_SUFFIX:STRING=_serial -ADIOS2_EXECUTABLE_SUFFIX:STRING=.serial -CMAKE_INSTALL_PREFIX:STRING=/usr -CMAKE_INSTALL_LIBDIR:STRING=lib/${arch} -CMAKE_INSTALL_CMAKEDIR:STRING=lib/${arch}/cmake/adios/serial - -CMAKE_Fortran_FLAGS:STRING=-Wall - -HDF5_C_COMPILER_EXECUTABLE:FILEPATH=/usr/bin/h5cc -") - -set(CTEST_CMAKE_GENERATOR "Ninja") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-el7-gnu8-ohpc.cmake b/scripts/ci/cmake/ci-el7-gnu8-ohpc.cmake deleted file mode 100644 index 8e142f7225..0000000000 --- a/scripts/ci/cmake/ci-el7-gnu8-ohpc.cmake +++ /dev/null @@ -1,33 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -find_package(EnvModules REQUIRED) - -env_module(purge) -env_module(load gnu8) -env_module(load py3-numpy) -env_module(load hdf5) - -set(ENV{CC} gcc) -set(ENV{CXX} g++) -set(ENV{FC} gfortran) - -set(dashboard_cache " -ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=ON -ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=ON -ADIOS2_USE_MPI:BOOL=OFF -ADIOS2_USE_Python:BOOL=ON -ADIOS2_USE_SZ:BOOL=ON -ADIOS2_USE_ZeroMQ:STRING=ON -ADIOS2_USE_ZFP:BOOL=ON - -CMAKE_C_FLAGS:STRING=-Wall -CMAKE_CXX_FLAGS:STRING=-Wall -CMAKE_Fortran_FLAGS:STRING=-Wall -") - -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-el7-gnu8-openmpi-ohpc-static.cmake b/scripts/ci/cmake/ci-el7-gnu8-openmpi-ohpc-static.cmake deleted file mode 100644 index 61962398f0..0000000000 --- a/scripts/ci/cmake/ci-el7-gnu8-openmpi-ohpc-static.cmake +++ /dev/null @@ -1,49 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -include(ProcessorCount) -ProcessorCount(NCPUS) -math(EXPR N2CPUS "${NCPUS}*2") - -find_package(EnvModules REQUIRED) - -env_module(purge) -env_module(load gnu8) -env_module(load py3-numpy) -env_module(load openmpi3) -env_module(load phdf5) -env_module(load py3-mpi4py) - -set(ENV{CC} gcc) -set(ENV{CXX} g++) -set(ENV{FC} gfortran) - -set(dashboard_cache " -BUILD_SHARED_LIBS:BOOL=OFF -CMAKE_POSITION_INDEPENDENT_CODE:BOOL=ON - -ADIOS2_BUILD_EXAMPLES:BOOL=OFF - -ADIOS2_USE_BZip2:BOOL=OFF -ADIOS2_USE_Blosc:BOOL=OFF -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=ON -ADIOS2_USE_MPI:BOOL=ON -ADIOS2_USE_Python:BOOL=OFF -ADIOS2_USE_SZ:BOOL=OFF -ADIOS2_USE_ZeroMQ:STRING=OFF -ADIOS2_USE_ZFP:BOOL=OFF - -CMAKE_C_FLAGS:STRING=-Wall -CMAKE_CXX_FLAGS:STRING=-Wall -CMAKE_Fortran_FLAGS:STRING=-Wall - -MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe -MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} -") - -set(CTEST_TEST_ARGS - PARALLEL_LEVEL 1 -) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-el7-gnu8-openmpi-ohpc.cmake b/scripts/ci/cmake/ci-el7-gnu8-openmpi-ohpc.cmake deleted file mode 100644 index 2dbec4c744..0000000000 --- a/scripts/ci/cmake/ci-el7-gnu8-openmpi-ohpc.cmake +++ /dev/null @@ -1,43 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -include(ProcessorCount) -ProcessorCount(NCPUS) -math(EXPR N2CPUS "${NCPUS}*2") - -find_package(EnvModules REQUIRED) - -env_module(purge) -env_module(load gnu8) -env_module(load py3-numpy) -env_module(load openmpi3) -env_module(load phdf5) -env_module(load py3-mpi4py) - -set(ENV{CC} gcc) -set(ENV{CXX} g++) -set(ENV{FC} gfortran) - -set(dashboard_cache " -ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=ON -ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=ON -ADIOS2_USE_MPI:BOOL=ON -ADIOS2_USE_Python:BOOL=ON -ADIOS2_USE_SZ:BOOL=ON -ADIOS2_USE_ZeroMQ:STRING=ON -ADIOS2_USE_ZFP:BOOL=ON - -CMAKE_C_FLAGS:STRING=-Wall -CMAKE_CXX_FLAGS:STRING=-Wall -CMAKE_Fortran_FLAGS:STRING=-Wall - -MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe -MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} -") - -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-el7-intel-ohpc.cmake b/scripts/ci/cmake/ci-el7-intel-ohpc.cmake deleted file mode 100644 index b3d6504fb1..0000000000 --- a/scripts/ci/cmake/ci-el7-intel-ohpc.cmake +++ /dev/null @@ -1,33 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -find_package(EnvModules REQUIRED) - -env_module(purge) -env_module(load intel) -env_module(load py3-numpy) -env_module(load hdf5) - -set(ENV{CC} icc) -set(ENV{CXX} icpc) -set(ENV{FC} ifort) - -set(dashboard_cache " -CMAKE_C_FLAGS:STRING=-Wall -CMAKE_CXX_FLAGS:STRING=-Wall -ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=ON -ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=ON -ADIOS2_USE_MPI:BOOL=OFF -ADIOS2_USE_Python:BOOL=ON -ADIOS2_USE_SZ:BOOL=ON -ADIOS2_USE_ZeroMQ:STRING=ON -ADIOS2_USE_ZFP:STRING=ON - -CMAKE_Fortran_FLAGS:STRING=-warn all -stand none -") - -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-el7-intel-openmpi-ohpc.cmake b/scripts/ci/cmake/ci-el7-intel-openmpi-ohpc.cmake deleted file mode 100644 index 6559df5773..0000000000 --- a/scripts/ci/cmake/ci-el7-intel-openmpi-ohpc.cmake +++ /dev/null @@ -1,43 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -include(ProcessorCount) -ProcessorCount(NCPUS) -math(EXPR N2CPUS "${NCPUS}*2") - -find_package(EnvModules REQUIRED) - -env_module(purge) -env_module(load intel) -env_module(load py3-numpy) -env_module(load openmpi3) -env_module(load phdf5) -env_module(load py3-mpi4py) - -set(ENV{CC} icc) -set(ENV{CXX} icpc) -set(ENV{FC} ifort) - -set(dashboard_cache " -ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=ON -ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=ON -ADIOS2_USE_MPI:BOOL=ON -ADIOS2_USE_Python:BOOL=ON -ADIOS2_USE_SZ:BOOL=ON -ADIOS2_USE_ZeroMQ:STRING=ON -ADIOS2_USE_ZFP:STRING=ON - -CMAKE_C_FLAGS:STRING=-Wall -CMAKE_CXX_FLAGS:STRING=-Wall -CMAKE_Fortran_FLAGS:STRING=-warn all -stand none - -MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe -MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} -") - -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-el8-icc-ompi.cmake b/scripts/ci/cmake/ci-el8-icc-ompi.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-el8-icc-ompi.cmake rename to scripts/ci/cmake/ci-el8-icc-ompi.cmake diff --git a/scripts/ci/cmake-v2/ci-el8-icc-serial.cmake b/scripts/ci/cmake/ci-el8-icc-serial.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-el8-icc-serial.cmake rename to scripts/ci/cmake/ci-el8-icc-serial.cmake diff --git a/scripts/ci/cmake-v2/ci-el8-oneapi-ompi.cmake b/scripts/ci/cmake/ci-el8-oneapi-ompi.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-el8-oneapi-ompi.cmake rename to scripts/ci/cmake/ci-el8-oneapi-ompi.cmake diff --git a/scripts/ci/cmake-v2/ci-el8-oneapi-serial.cmake b/scripts/ci/cmake/ci-el8-oneapi-serial.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-el8-oneapi-serial.cmake rename to scripts/ci/cmake/ci-el8-oneapi-serial.cmake diff --git a/scripts/ci/cmake-v2/ci-macos11-xcode13_0-serial.cmake b/scripts/ci/cmake/ci-macos11-xcode13_0-serial.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-macos11-xcode13_0-serial.cmake rename to scripts/ci/cmake/ci-macos11-xcode13_0-serial.cmake diff --git a/scripts/ci/cmake-v2/ci-macos12-xcode13_4_1-serial.cmake b/scripts/ci/cmake/ci-macos12-xcode13_4_1-serial.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-macos12-xcode13_4_1-serial.cmake rename to scripts/ci/cmake/ci-macos12-xcode13_4_1-serial.cmake diff --git a/scripts/ci/cmake/ci-suse-pgi-openmpi.cmake b/scripts/ci/cmake/ci-suse-pgi-openmpi.cmake deleted file mode 100644 index ae4a2852e2..0000000000 --- a/scripts/ci/cmake/ci-suse-pgi-openmpi.cmake +++ /dev/null @@ -1,35 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -include(ProcessorCount) -ProcessorCount(NCPUS) -math(EXPR N2CPUS "${NCPUS}*2") - -find_package(EnvModules REQUIRED) - -env_module(purge) -env_module(load nvhpc) - -#set(ENV{CFLAGS} -Werror) -set(ENV{CXXFLAGS} --brief_diagnostics) -#set(ENV{FFLAGS} "-warn errors") - -set(dashboard_cache " -ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=OFF -ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=OFF -ADIOS2_USE_MPI:BOOL=ON -ADIOS2_USE_Python:BOOL=OFF -ADIOS2_USE_SZ:BOOL=ON -ADIOS2_USE_ZeroMQ:STRING=ON -ADIOS2_USE_ZFP:BOOL=ON - -MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe -MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} -") - -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-suse-pgi.cmake b/scripts/ci/cmake/ci-suse-pgi.cmake deleted file mode 100644 index 716a4d36a2..0000000000 --- a/scripts/ci/cmake/ci-suse-pgi.cmake +++ /dev/null @@ -1,27 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -find_package(EnvModules REQUIRED) - -env_module(purge) -env_module(load nvhpc-nompi) - -#set(ENV{CFLAGS} -Werror) -set(ENV{CXXFLAGS} --brief_diagnostics) -#set(ENV{FFLAGS} "-warn errors") - -set(dashboard_cache " -ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=OFF -ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=ON -ADIOS2_USE_MPI:BOOL=OFF -ADIOS2_USE_Python:BOOL=OFF -ADIOS2_USE_SZ:BOOL=ON -ADIOS2_USE_ZeroMQ:STRING=ON -ADIOS2_USE_ZFP:BOOL=ON -") - -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-ubuntu1804-spack.cmake b/scripts/ci/cmake/ci-ubuntu1804-spack.cmake deleted file mode 100644 index 94c1f497c1..0000000000 --- a/scripts/ci/cmake/ci-ubuntu1804-spack.cmake +++ /dev/null @@ -1,40 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -include(ProcessorCount) -ProcessorCount(NCPUS) -math(EXPR N2CPUS "${NCPUS}*2") - -set(ENV{CC} gcc) -set(ENV{CXX} g++) -set(ENV{FC} gfortran) - -set(dashboard_cache " -ADIOS2_USE_BZip2:BOOL=ON -ADIOS2_USE_Blosc:BOOL=ON -ADIOS2_USE_DataMan:BOOL=ON -ADIOS2_USE_Fortran:BOOL=ON -ADIOS2_USE_HDF5:BOOL=ON -ADIOS2_USE_MPI:BOOL=ON -ADIOS2_USE_Python:BOOL=ON -ADIOS2_USE_SZ:BOOL=ON -ADIOS2_USE_ZeroMQ:STRING=ON -ADIOS2_USE_ZFP:BOOL=ON -ADIOS2_USE_Blosc:BOOL=ON -ADIOS2_USE_DataSpaces:BOOL=OFF - -ADIOS2_USE_EXTERNAL_DEPENDENCIES:BOOL=ON -ADIOS2_USE_EXTERNAL_GTEST:BOOL=OFF -ADIOS2_USE_EXTERNAL_PUGIXML:BOOL=OFF - -CMAKE_C_FLAGS:STRING=-Wall -CMAKE_CXX_FLAGS:STRING=-Wall -CMAKE_Fortran_FLAGS:STRING=-Wall - -MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe -MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} -") - -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-clang10-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-clang10-ompi.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ubuntu20.04-clang10-ompi.cmake rename to scripts/ci/cmake/ci-ubuntu20.04-clang10-ompi.cmake diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-clang10-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-clang10-serial.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ubuntu20.04-clang10-serial.cmake rename to scripts/ci/cmake/ci-ubuntu20.04-clang10-serial.cmake diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-clang6-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-clang6-ompi.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ubuntu20.04-clang6-ompi.cmake rename to scripts/ci/cmake/ci-ubuntu20.04-clang6-ompi.cmake diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-clang6-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-clang6-serial.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ubuntu20.04-clang6-serial.cmake rename to scripts/ci/cmake/ci-ubuntu20.04-clang6-serial.cmake diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-mpich.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc10-mpich.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-mpich.cmake rename to scripts/ci/cmake/ci-ubuntu20.04-gcc10-mpich.cmake diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc10-ompi.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-ompi.cmake rename to scripts/ci/cmake/ci-ubuntu20.04-gcc10-ompi.cmake diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc10-serial.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ubuntu20.04-gcc10-serial.cmake rename to scripts/ci/cmake/ci-ubuntu20.04-gcc10-serial.cmake diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc11-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc11-ompi.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ubuntu20.04-gcc11-ompi.cmake rename to scripts/ci/cmake/ci-ubuntu20.04-gcc11-ompi.cmake diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc11-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc11-serial.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ubuntu20.04-gcc11-serial.cmake rename to scripts/ci/cmake/ci-ubuntu20.04-gcc11-serial.cmake diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc8-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-ompi.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ubuntu20.04-gcc8-ompi.cmake rename to scripts/ci/cmake/ci-ubuntu20.04-gcc8-ompi.cmake diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc8-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-serial.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ubuntu20.04-gcc8-serial.cmake rename to scripts/ci/cmake/ci-ubuntu20.04-gcc8-serial.cmake diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc9-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc9-ompi.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ubuntu20.04-gcc9-ompi.cmake rename to scripts/ci/cmake/ci-ubuntu20.04-gcc9-ompi.cmake diff --git a/scripts/ci/cmake-v2/ci-ubuntu20.04-gcc9-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc9-serial.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-ubuntu20.04-gcc9-serial.cmake rename to scripts/ci/cmake/ci-ubuntu20.04-gcc9-serial.cmake diff --git a/scripts/ci/cmake/ci-win2016-vs2017-msmpi-ninja.cmake b/scripts/ci/cmake/ci-win2016-vs2017-msmpi-ninja.cmake deleted file mode 100644 index 0d5584346d..0000000000 --- a/scripts/ci/cmake/ci-win2016-vs2017-msmpi-ninja.cmake +++ /dev/null @@ -1,24 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -set(ENV{CC} cl) -set(ENV{CXX} cl) -set(ENV{CFLAGS} /WX) -set(ENV{CXXFLAGS} /WX) - -include(ProcessorCount) -ProcessorCount(NCPUS) -math(EXPR N2CPUS "${NCPUS}*2") - -set(dashboard_cache " -ADIOS2_USE_Fortran:BOOL=OFF -ADIOS2_USE_MPI:STRING=ON - -MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} -") - -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) -set(CTEST_CMAKE_GENERATOR "Ninja") -#set(CTEST_CMAKE_GENERATOR "Visual Studio 15 2017") -#set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-win2016-vs2017.cmake b/scripts/ci/cmake/ci-win2016-vs2017.cmake deleted file mode 100644 index 5050076142..0000000000 --- a/scripts/ci/cmake/ci-win2016-vs2017.cmake +++ /dev/null @@ -1,17 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com - -set(ENV{CC} cl) -set(ENV{CXX} cl) -set(ENV{CFLAGS} /WX) -set(ENV{CXXFLAGS} /WX) - -set(dashboard_cache " -ADIOS2_USE_Fortran:BOOL=OFF -ADIOS2_USE_MPI:BOOL=OFF -") - -#set(CTEST_CMAKE_GENERATOR "Ninja") -set(CTEST_CMAKE_GENERATOR "Visual Studio 15 2017") -set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") -list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") -include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake-v2/ci-win2019-vs2019-ompi.cmake b/scripts/ci/cmake/ci-win2019-vs2019-ompi.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-win2019-vs2019-ompi.cmake rename to scripts/ci/cmake/ci-win2019-vs2019-ompi.cmake diff --git a/scripts/ci/cmake-v2/ci-win2019-vs2019-serial.cmake b/scripts/ci/cmake/ci-win2019-vs2019-serial.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-win2019-vs2019-serial.cmake rename to scripts/ci/cmake/ci-win2019-vs2019-serial.cmake diff --git a/scripts/ci/cmake-v2/ci-win2022-vs2022-ompi.cmake b/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-win2022-vs2022-ompi.cmake rename to scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake diff --git a/scripts/ci/cmake-v2/ci-win2022-vs2022-serial.cmake b/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake similarity index 100% rename from scripts/ci/cmake-v2/ci-win2022-vs2022-serial.cmake rename to scripts/ci/cmake/ci-win2022-vs2022-serial.cmake diff --git a/scripts/ci/gh-actions/run.sh b/scripts/ci/gh-actions/run.sh index 9847d5bfec..5020d18ee7 100755 --- a/scripts/ci/gh-actions/run.sh +++ b/scripts/ci/gh-actions/run.sh @@ -39,7 +39,7 @@ fi export CI_BIN_DIR="${CI_ROOT_DIR}/${GH_YML_JOBNAME}" STEP=$1 -CTEST_SCRIPT=gha/scripts/ci/cmake-v2/ci-${GH_YML_JOBNAME}.cmake +CTEST_SCRIPT=gha/scripts/ci/cmake/ci-${GH_YML_JOBNAME}.cmake # Update and Test steps enable an extra step CTEST_STEP_ARGS="-Ddashboard_do_${STEP}=ON" diff --git a/scripts/ci/gitlab-ci/run.sh b/scripts/ci/gitlab-ci/run.sh index 1ddfb0c9dc..07b974f8fe 100755 --- a/scripts/ci/gitlab-ci/run.sh +++ b/scripts/ci/gitlab-ci/run.sh @@ -4,7 +4,7 @@ set -e source scripts/ci/gitlab-ci/setup-vars.sh -readonly CTEST_SCRIPT=scripts/ci/cmake-v2/ci-${CI_JOB_NAME}.cmake +readonly CTEST_SCRIPT=scripts/ci/cmake/ci-${CI_JOB_NAME}.cmake if [ ! -f "$CTEST_SCRIPT" ] then echo "[E] Variable files does not exits: $CTEST_SCRIPT" diff --git a/scripts/ci/images-v2/Dockerfile.ci-el8-intel b/scripts/ci/images/Dockerfile.ci-el8-intel similarity index 100% rename from scripts/ci/images-v2/Dockerfile.ci-el8-intel rename to scripts/ci/images/Dockerfile.ci-el8-intel diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-base b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base similarity index 100% rename from scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-base rename to scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-clang b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang similarity index 100% rename from scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-clang rename to scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-gcc b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-gcc similarity index 100% rename from scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-gcc rename to scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-gcc diff --git a/scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-intel b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-intel similarity index 100% rename from scripts/ci/images-v2/Dockerfile.ci-spack-ubuntu20.04-intel rename to scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-intel diff --git a/scripts/ci/images-v2/build-el8.sh b/scripts/ci/images/build-el8.sh similarity index 96% rename from scripts/ci/images-v2/build-el8.sh rename to scripts/ci/images/build-el8.sh index e60274cf60..ab65fa9b23 100755 --- a/scripts/ci/images-v2/build-el8.sh +++ b/scripts/ci/images/build-el8.sh @@ -1,5 +1,4 @@ - -#~/bin/bash +#!/bin/bash set -ex diff --git a/scripts/ci/images/build-native-images.sh b/scripts/ci/images/build-native-images.sh deleted file mode 100755 index f84eec0e9a..0000000000 --- a/scripts/ci/images/build-native-images.sh +++ /dev/null @@ -1,79 +0,0 @@ -#!/bin/bash - -if ! which docker-squash > /dev/null -then - echo "docker-squash not found in PATH." - echo - echo "This relies on docker-squash from" - echo "https://github.com/goldmann/docker-squash" - echo "to be present in your path" -fi - -function build_partially_squashed_image() -{ - local IMAGE_FROM=$1 - local IMAGE_TO=$2 - - echo "${IMAGE_TO}" - docker build -t ornladios/adios2:ci-${IMAGE_TO} ${IMAGE_TO} - - docker-squash \ - -f ornladios/adios2:ci-${IMAGE_FROM} \ - -t ornladios/adios2:ci-${IMAGE_TO} \ - ornladios/adios2:ci-${IMAGE_TO} -} - -if [ "${ADIOS2_DOCKER_BUILD}" != "0" ] -then - -echo "************************************************************" -echo "* Building fully squashed root base images *" -echo "************************************************************" -ROOT_BASE_IMAGES="el7-base suse-nvphcsdk-base fedora-sanitizers-base debian-sid" -for IMAGE in ${ROOT_BASE_IMAGES} -do - echo "${IMAGE}" - docker build --no-cache --squash -t ornladios/adios2:ci-${IMAGE} ${IMAGE} - echo -done - -echo "************************************************************" -echo "* Building partially squashed intermediate base images *" -echo "************************************************************" -INTERMEDIATE_IMAGES="el7-base,el7-gnu8-ohpc-base el7-base,el7-intel-ohpc-base" -for IMAGE_PAIR in ${INTERMEDIATE_IMAGES} -do - echo "${IMAGE_PAIR%,*} -> ${IMAGE_PAIR#*,}" - build_partially_squashed_image ${IMAGE_PAIR%,*} ${IMAGE_PAIR#*,} - echo -done - -echo "************************************************************" -echo "* Building partially squashed final images *" -echo "************************************************************" -LEAF_IMAGES="el7-base,el7 el7-gnu8-ohpc-base,el7-gnu8-ohpc el7-gnu8-ohpc-base,el7-gnu8-openmpi-ohpc el7-intel-ohpc-base,el7-intel-ohpc el7-intel-ohpc-base,el7-intel-openmpi-ohpc suse-nvphcsdk-base,suse-pgi suse-nvphcsdk-base,suse-nvphcsdk-openmpi fedora-sanitizers-base,fedora-asan fedora-sanitizers-base,fedora-ubsan" -for IMAGE_PAIR in ${LEAF_IMAGES} -do - echo "${IMAGE_PAIR%,*} -> ${IMAGE_PAIR#*,}" - build_partially_squashed_image ${IMAGE_PAIR%,*} ${IMAGE_PAIR#*,} - echo -done - -fi - - -if [ "${ADIOS2_DOCKER_PUSH}" != "0" ] -then - -echo "************************************************************" -echo "* Push all images *" -echo "************************************************************" -ALL_IMAGES="el7-base el7 el7-gnu8-ohpc-base el7-gnu8-ohpc el7-gnu8-openmpi-ohpc el7-intel-ohpc-base el7-intel-ohpc el7-intel-openmpi-ohpc suse-nvphcsdk-base suse-pgi suse-nvphcsdk-openmpi fedora-sanitizers-base fedora-asan fedora-ubsan debian-sid" -for IMAGE in ${ALL_IMAGES} -do - echo "${IMAGE}" - docker push ornladios/adios2:ci-${IMAGE} - echo -done - -fi diff --git a/scripts/ci/images-v2/build-ubuntu.sh b/scripts/ci/images/build-ubuntu.sh similarity index 99% rename from scripts/ci/images-v2/build-ubuntu.sh rename to scripts/ci/images/build-ubuntu.sh index 051ec026e2..2129e79767 100755 --- a/scripts/ci/images-v2/build-ubuntu.sh +++ b/scripts/ci/images/build-ubuntu.sh @@ -1,4 +1,4 @@ -#~/bin/bash +#!/bin/bash set -ex diff --git a/scripts/ci/images/debian-sid/Dockerfile b/scripts/ci/images/debian-sid/Dockerfile deleted file mode 100644 index 764b65e833..0000000000 --- a/scripts/ci/images/debian-sid/Dockerfile +++ /dev/null @@ -1,37 +0,0 @@ -FROM debian:sid - -RUN apt update && \ - apt full-upgrade -y --no-install-recommends && \ - apt install -y --no-install-recommends \ - curl \ - ca-certificates \ - devscripts \ - git \ - cmake \ - ninja-build \ - make \ - g++ \ - gfortran \ - pkg-config \ - libpugixml-dev \ - libyaml-cpp-dev \ - pybind11-dev \ - libgtest-dev \ - nlohmann-json3-dev \ - python3.8-dev \ - libpython3.8-dev \ - python3.9-dev \ - libpython3.9-dev \ - python3-distutils \ - python3-numpy \ - python3-mpi4py \ - libblosc-dev \ - libbz2-dev \ - libpng-dev \ - libczmq-dev \ - libopenmpi-dev \ - libhdf5-serial-dev \ - libhdf5-openmpi-dev \ - libfabric-dev \ - libffi-dev && \ - apt autoremove -y diff --git a/scripts/ci/images/el7-base/Dockerfile b/scripts/ci/images/el7-base/Dockerfile deleted file mode 100644 index fea462b765..0000000000 --- a/scripts/ci/images/el7-base/Dockerfile +++ /dev/null @@ -1,24 +0,0 @@ -FROM centos:centos7 - -# Install core dev packages -RUN yum upgrade -y && \ - yum -y install make curl file valgrind vim bison flex sudo gdb \ - pkgconfig bison flex pkgconfig gcc gcc-c++ gcc-gfortran \ - zlib zlib-devel bzip2 bzip2-libs bzip2-devel libpng-devel \ - libfabric-devel libffi-devel python3 python3-devel -RUN yum -y install epel-release && \ - yum -y install zeromq-devel blosc-devel libzstd-devel - -# Install and setup newer version of git -RUN yum install -y https://repo.ius.io/ius-release-el7.rpm && \ - yum -y install git224 && \ - yum remove -y ius-release - -# Install the most recent CMake nightly binary -WORKDIR /opt/cmake -RUN curl -L https://cmake.org/files/dev/$(curl https://cmake.org/files/dev/ | sed -n '/Linux-x86_64.tar.gz/s/.*>\(cmake[^<]*\)<.*/\1/p' | sort | tail -1) | tar --strip-components=1 -xzv -ENV PATH=/opt/cmake/bin:${PATH} - -# Misc cleanup of unneeded files -RUN yum clean all && \ - rm -rfv /tmp/* /var/cache/yum diff --git a/scripts/ci/images/el7-gnu8-ohpc-base/Dockerfile b/scripts/ci/images/el7-gnu8-ohpc-base/Dockerfile deleted file mode 100644 index 4da24cdf62..0000000000 --- a/scripts/ci/images/el7-gnu8-ohpc-base/Dockerfile +++ /dev/null @@ -1,43 +0,0 @@ -FROM ornladios/adios2:ci-el7-base - -# Install OpenHPC packages -RUN yum -y install https://github.com/openhpc/ohpc/releases/download/v1.3.GA/ohpc-release-1.3-1.el7.x86_64.rpm && \ - yum -y install lmod-ohpc gnu8-compilers-ohpc python3-numpy-gnu8-ohpc && \ - sed 's|python3\.4|python3.6|g' -i /opt/ohpc/pub/moduledeps/*/py3-numpy/* - -# Install ZFP -WORKDIR /opt/zfp -RUN curl -L https://github.com/LLNL/zfp/releases/download/0.5.5/zfp-0.5.5.tar.gz | tar -xvz && \ - mkdir build && \ - cd build && \ - source /etc/profile && \ - module load gnu8 && \ - export CC=gcc CXX=g++ FC=gfortran && \ - cmake -DBUILD_SHARED_LIBS=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/zfp/0.5.5 ../zfp-0.5.5 && \ - make -j$(grep -c '^processor' /proc/cpuinfo) install && \ - cd .. && \ - rm -rf zfp-0.5.5 build -ENV PATH=/opt/zfp/0.5.5/bin:${PATH} \ - LD_LIBRARY_PATH=/opt/zfp/0.5.5/lib64:${LD_LIBRARY_PATH} \ - CMAKE_PREFIX_PATH=/opt/zfp/0.5.5:${CMAKE_PREFIX_PATH} - -# Install SZ -WORKDIR /opt/sz -RUN curl -L https://github.com/disheng222/SZ/archive/v2.1.8.3.tar.gz | tar -xvz && \ - mkdir build && \ - cd build && \ - source /etc/profile && \ - module load gnu8 && \ - export CC=gcc CXX=g++ FC=gfortran && \ - cmake -DBUILD_SHARED_LIBS=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/sz/2.1.8.3 ../SZ-2.1.8.3 && \ - make -j$(grep -c '^processor' /proc/cpuinfo) install && \ - cd .. && \ - rm -rf SZ-2.1.8.3 build -ENV PATH=/opt/sz/2.1.8.3/bin:${PATH} \ - LD_LIBRARY_PATH=/opt/sz/2.1.8.3/lib64:${LD_LIBRARY_PATH} \ - CMAKE_PREFIX_PATH=/opt/sz/2.1.8.3:${CMAKE_PREFIX_PATH} - -# Misc cleanup of unneeded files -RUN rm -rfv \ - /tmp/* \ - /var/cache/yum diff --git a/scripts/ci/images/el7-gnu8-ohpc/Dockerfile b/scripts/ci/images/el7-gnu8-ohpc/Dockerfile deleted file mode 100644 index 905e26df46..0000000000 --- a/scripts/ci/images/el7-gnu8-ohpc/Dockerfile +++ /dev/null @@ -1,8 +0,0 @@ -FROM ornladios/adios2:ci-el7-gnu8-ohpc-base - -# Install OpenHPC packages -RUN yum -y install hdf5-gnu8-ohpc - -# Misc cleanup of unneeded files -RUN yum clean all && \ - rm -rfv /tmp/* /var/cache/yum diff --git a/scripts/ci/images/el7-gnu8-openmpi-ohpc/Dockerfile b/scripts/ci/images/el7-gnu8-openmpi-ohpc/Dockerfile deleted file mode 100644 index 3b81982bdb..0000000000 --- a/scripts/ci/images/el7-gnu8-openmpi-ohpc/Dockerfile +++ /dev/null @@ -1,11 +0,0 @@ -FROM ornladios/adios2:ci-el7-gnu8-ohpc-base - -# Install OpenHPC packages -RUN yum -y install openmpi3-gnu8-ohpc phdf5-gnu8-openmpi3-ohpc \ - python3-mpi4py-gnu8-openmpi3-ohpc && \ - sed 's|python3\.4|python3.6|g' -i /opt/ohpc/pub/moduledeps/*/py3-mpi4py/* - - -# Misc cleanup of unneeded files -RUN yum clean all && \ - rm -rfv /tmp/* /var/cache/yum diff --git a/scripts/ci/images/el7-intel-ohpc-base/.gitignore b/scripts/ci/images/el7-intel-ohpc-base/.gitignore deleted file mode 100644 index 2ade46bffd..0000000000 --- a/scripts/ci/images/el7-intel-ohpc-base/.gitignore +++ /dev/null @@ -1,2 +0,0 @@ -*.lic -parallel_studio*.tgz diff --git a/scripts/ci/images/el7-intel-ohpc-base/Dockerfile b/scripts/ci/images/el7-intel-ohpc-base/Dockerfile deleted file mode 100644 index fcd817a38b..0000000000 --- a/scripts/ci/images/el7-intel-ohpc-base/Dockerfile +++ /dev/null @@ -1,97 +0,0 @@ -################################################################################ -# READ THIS FIRST!!!!! -################################################################################ -# It is extremly important that this image be squashed before pushing using -# either docker build --squash, docker-squash, or some other mechanism. The -# last step in this image build removes the various compiler installer -# artifacts, including the license file. Failure to squash the image will -# result in the license file being present within the layers of the final image. -# -# For the compiler to run successfully in this image, the license file needs to -# be populated before running. To achieve this on a public CI service: -# -# 1. Create a secret variable INTEL_LICENSE_FILE_CONTENT -# 2. Set the value of the variable of the base64 encoded content of -# the license file. You can get this from the following: -# $ base64 -w0 /path/to/license.lic -# 3. Create a step in the build before anything else is run that sets up the -# the license file from the secret variable: -# mkdir -p /opt/intel/licenses -# echo "$INTEL_LICENSE_FILE_CONTENT" | base64 -d | sudo tee /opt/intel/licenses/license.lic > /dev/null -# -# The following build arguments can be passed: -# LICENSE_FILE - The name of the license file in the build directory -# INTEL_VERSION - The compiler version to use for installer files in the -# build directory. For example, a value of 2019_update6 would copy and -# install: -# parallel_studio_xe_2019_update6_composer_edition_for_cpp.tgz -# parallel_studio_xe_2019_update6_composer_edition_for_fortran.tgz -# -################################################################################ - -FROM ornladios/adios2:ci-el7-base - -# Install Intel C++ and Fortran compilers -ARG LICENSE_FILE=CI.lic -ARG INTEL_VERSION=2020_update2 -WORKDIR /tmp -COPY ${LICENSE_FILE} /opt/intel/licenses/license.lic -COPY silent-cpp.cfg /tmp -COPY silent-fortran.cfg /tmp -COPY parallel_studio_xe_${INTEL_VERSION}_composer_edition_for_cpp.tgz /tmp/ -COPY parallel_studio_xe_${INTEL_VERSION}_composer_edition_for_fortran.tgz /tmp/ -RUN tar -xzf parallel_studio_xe_${INTEL_VERSION}_composer_edition_for_cpp.tgz && \ - ./parallel_studio_xe_${INTEL_VERSION}_composer_edition_for_cpp/install.sh -s ./silent-cpp.cfg && \ - tar -xzf parallel_studio_xe_${INTEL_VERSION}_composer_edition_for_fortran.tgz && \ - ./parallel_studio_xe_${INTEL_VERSION}_composer_edition_for_fortran/install.sh -s ./silent-fortran.cfg - -# Install OpenHPC packages -RUN yum install -y /tmp/*_for_cpp/rpm/intel-{comp,ps}xe-doc-*.rpm && \ - yum -y install https://github.com/openhpc/ohpc/releases/download/v1.3.GA/ohpc-release-1.3-1.el7.x86_64.rpm && \ - yum -y install lmod-ohpc intel-compilers-devel-ohpc \ - python3-numpy-intel-ohpc && \ - sed 's|python3\.4|python3.6|g' -i /opt/ohpc/pub/moduledeps/*/py3-numpy/* - -# Install ZFP -WORKDIR /opt/zfp -RUN curl -L https://github.com/LLNL/zfp/releases/download/0.5.5/zfp-0.5.5.tar.gz | tar -xvz && \ - mkdir build && \ - cd build && \ - source /etc/profile && \ - module load intel && \ - export CC=icc CXX=icpc FC=ifort && \ - cmake -DBUILD_SHARED_LIBS=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/zfp/0.5.5 ../zfp-0.5.5 && \ - make -j$(grep -c '^processor' /proc/cpuinfo) install && \ - cd .. && \ - rm -rf zfp-0.5.5 build -ENV PATH=/opt/zfp/0.5.5/bin:${PATH} \ - LD_LIBRARY_PATH=/opt/zfp/0.5.5/lib64:${LD_LIBRARY_PATH} \ - CMAKE_PREFIX_PATH=/opt/zfp/0.5.5:${CMAKE_PREFIX_PATH} - -# Install SZ -WORKDIR /opt/sz -RUN curl -L https://github.com/disheng222/SZ/archive/v2.1.8.3.tar.gz | tar -xvz && \ - mkdir build && \ - cd build && \ - source /etc/profile && \ - module load intel && \ - export CC=icc CXX=icpc FC=ifort && \ - cmake -DBUILD_SHARED_LIBS=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/sz/2.1.8.3 ../SZ-2.1.8.3 && \ - make -j$(grep -c '^processor' /proc/cpuinfo) install && \ - cd .. && \ - rm -rf SZ-2.1.8.3 build -ENV PATH=/opt/sz/2.1.8.3/bin:${PATH} \ - LD_LIBRARY_PATH=/opt/sz/2.1.8.3/lib64:${LD_LIBRARY_PATH} \ - CMAKE_PREFIX_PATH=/opt/sz/2.1.8.3:${CMAKE_PREFIX_PATH} - -# Misc cleanup of unneeded files -RUN rm -rfv \ - /tmp/* \ - /opt/intel/licenses/* \ - /opt/intel/man \ - /opt/intel/documentation_* \ - /opt/intel/ide_support_* \ - /opt/intel/samples_* \ - /opt/intel/compilers_and_libraries_*.*.*/linux/mkl/benchmarks \ - /opt/intel/compilers_and_libraries_*.*.*/linux/mkl/examples \ - /var/cache/yum diff --git a/scripts/ci/images/el7-intel-ohpc-base/silent-cpp.cfg b/scripts/ci/images/el7-intel-ohpc-base/silent-cpp.cfg deleted file mode 100644 index c2a1b3f3f1..0000000000 --- a/scripts/ci/images/el7-intel-ohpc-base/silent-cpp.cfg +++ /dev/null @@ -1,70 +0,0 @@ -# Patterns used to check silent configuration file -# -# anythingpat - any string -# filepat - the file location pattern (/file/location/to/license.lic) -# lspat - the license server address pattern (0123@hostname) -# snpat - the serial number pattern (ABCD-01234567) -# comppat - the component abbreviation (intel-component-0123.4-567__arch), use installer command line option to get it - -# Accept EULA, valid values are: {accept, decline} -ACCEPT_EULA=accept - -# Optional error behavior, valid values are: {yes, no} -CONTINUE_WITH_OPTIONAL_ERROR=yes - -# Install location, valid values are: {/opt/intel, filepat} -PSET_INSTALL_DIR=/opt/intel - -# Continue with overwrite of existing installation directory, valid values are: {yes, no} -CONTINUE_WITH_INSTALLDIR_OVERWRITE=yes - -# List of components to install (use semicolon to separate the components), valid values are: {ALL, DEFAULTS, comppat} -COMPONENTS=intel-icc__x86_64;intel-mkl-core-c__x86_64 - -# Installation mode, valid values are: {install, repair, uninstall} -PSET_MODE=install - -# Serial number, valid values are: {snpat} -#ACTIVATION_SERIAL_NUMBER=snpat - -# License file or license server, valid values are: {lspat, filepat} -#ACTIVATION_LICENSE_FILE= - -# Activation type, valid values are: {exist_lic, license_server, license_file, serial_number} -ACTIVATION_TYPE=exist_lic - -# Path to the cluster description file, valid values are: {filepat} -#CLUSTER_INSTALL_MACHINES_FILE=filepat - -# Intel(R) Software Improvement Program -# -# To improve our software and customer experience, Intel would like to collect technical -# information about your software installation and runtime status (such as installation metrics, -# license/support types, software SKU/serial, counters, flags, and timestamps) -# and development environment (such as operating system, CPU architecture, -# last 4-digits of the MAC address, 3rd party API usage and other Intel products installed). ("Information"). -# -# Intel may collect this Information directly or optionally through the use of Google Analytics. -# If Google Analytics is used to collect the Information, Google will aggregate the -# Information with that of other users and present the aggregated results to Intel without any personal identifiers. -# Information collected by Google will be retained by Google under its own data collection policies -# (https://support.google.com/analytics/answer/6004245?hl=en). -# -# Information that cannot be linked to an identifiable person may be retained by Intel -# as long as it is necessary to support the software. -# -# You can revoke your consent at any time by removing the "~/intel/isip" file. -# To remove the file, please open a macOS or Linux terminal, go to the folder "~/intel" and delete the "isip" file. -# For more details, please refer to this article: (https://software.intel.com/en-us/articles/software-improvement-program). -# -# Yes - I consent to the collection of my Information -# No - I do NOT consent to the collection of my Information -#, valid values are: {yes, no} -#INTEL_SW_IMPROVEMENT_PROGRAM_CONSENT=no - -# Perform validation of digital signatures of RPM files, valid values are: {yes, no} -SIGNING_ENABLED=yes - -# Select target architecture of your applications, valid values are: {IA32, INTEL64, ALL} -ARCH_SELECTED=INTEL64 - diff --git a/scripts/ci/images/el7-intel-ohpc-base/silent-fortran.cfg b/scripts/ci/images/el7-intel-ohpc-base/silent-fortran.cfg deleted file mode 100644 index c067549a88..0000000000 --- a/scripts/ci/images/el7-intel-ohpc-base/silent-fortran.cfg +++ /dev/null @@ -1,70 +0,0 @@ -# Patterns used to check silent configuration file -# -# anythingpat - any string -# filepat - the file location pattern (/file/location/to/license.lic) -# lspat - the license server address pattern (0123@hostname) -# snpat - the serial number pattern (ABCD-01234567) -# comppat - the component abbreviation (intel-component-0123.4-567__arch), use installer command line option to get it - -# Accept EULA, valid values are: {accept, decline} -ACCEPT_EULA=accept - -# Optional error behavior, valid values are: {yes, no} -CONTINUE_WITH_OPTIONAL_ERROR=yes - -# Install location, valid values are: {/opt/intel, filepat} -PSET_INSTALL_DIR=/opt/intel - -# Continue with overwrite of existing installation directory, valid values are: {yes, no} -CONTINUE_WITH_INSTALLDIR_OVERWRITE=yes - -# List of components to install (use semicolon to separate the components), valid values are: {ALL, DEFAULTS, comppat} -COMPONENTS=intel-ifort__x86_64;intel-mkl-f__x86_64 - -# Installation mode, valid values are: {install, repair, uninstall} -PSET_MODE=install - -# Serial number, valid values are: {snpat} -#ACTIVATION_SERIAL_NUMBER=snpat - -# License file or license server, valid values are: {lspat, filepat} -#ACTIVATION_LICENSE_FILE= - -# Activation type, valid values are: {exist_lic, license_server, license_file, serial_number} -ACTIVATION_TYPE=exist_lic - -# Path to the cluster description file, valid values are: {filepat} -#CLUSTER_INSTALL_MACHINES_FILE=filepat - -# Intel(R) Software Improvement Program -# -# To improve our software and customer experience, Intel would like to collect technical -# information about your software installation and runtime status (such as installation metrics, -# license/support types, software SKU/serial, counters, flags, and timestamps) -# and development environment (such as operating system, CPU architecture, -# last 4-digits of the MAC address, 3rd party API usage and other Intel products installed). ("Information"). -# -# Intel may collect this Information directly or optionally through the use of Google Analytics. -# If Google Analytics is used to collect the Information, Google will aggregate the -# Information with that of other users and present the aggregated results to Intel without any personal identifiers. -# Information collected by Google will be retained by Google under its own data collection policies -# (https://support.google.com/analytics/answer/6004245?hl=en). -# -# Information that cannot be linked to an identifiable person may be retained by Intel -# as long as it is necessary to support the software. -# -# You can revoke your consent at any time by removing the "~/intel/isip" file. -# To remove the file, please open a macOS or Linux terminal, go to the folder "~/intel" and delete the "isip" file. -# For more details, please refer to this article: (https://software.intel.com/en-us/articles/software-improvement-program). -# -# Yes - I consent to the collection of my Information -# No - I do NOT consent to the collection of my Information -#, valid values are: {yes, no} -#INTEL_SW_IMPROVEMENT_PROGRAM_CONSENT=no - -# Perform validation of digital signatures of RPM files, valid values are: {yes, no} -SIGNING_ENABLED=yes - -# Select target architecture of your applications, valid values are: {IA32, INTEL64, ALL} -ARCH_SELECTED=INTEL64 - diff --git a/scripts/ci/images/el7-intel-ohpc/Dockerfile b/scripts/ci/images/el7-intel-ohpc/Dockerfile deleted file mode 100644 index 0b12609af9..0000000000 --- a/scripts/ci/images/el7-intel-ohpc/Dockerfile +++ /dev/null @@ -1,8 +0,0 @@ -FROM ornladios/adios2:ci-el7-intel-ohpc-base - -# Install OpenHPC packages -RUN yum -y install hdf5-intel-ohpc - -# Misc cleanup of unneeded files -RUN yum clean all && \ - rm -rfv /tmp/* /var/cache/yum diff --git a/scripts/ci/images/el7-intel-openmpi-ohpc/Dockerfile b/scripts/ci/images/el7-intel-openmpi-ohpc/Dockerfile deleted file mode 100644 index 752fd0224c..0000000000 --- a/scripts/ci/images/el7-intel-openmpi-ohpc/Dockerfile +++ /dev/null @@ -1,10 +0,0 @@ -FROM ornladios/adios2:ci-el7-intel-ohpc-base - -# Install OpenHPC packages -RUN yum -y install openmpi3-intel-ohpc phdf5-intel-openmpi3-ohpc \ - python3-mpi4py-intel-openmpi3-ohpc && \ - sed 's|python3\.4|python3.6|g' -i /opt/ohpc/pub/moduledeps/*/py3-mpi4py/* - -# Misc cleanup of unneeded files -RUN yum clean all && \ - rm -rfv /tmp/* /var/cache/yum diff --git a/scripts/ci/images/el7/Dockerfile b/scripts/ci/images/el7/Dockerfile deleted file mode 100644 index b6476d3089..0000000000 --- a/scripts/ci/images/el7/Dockerfile +++ /dev/null @@ -1,34 +0,0 @@ -FROM ornladios/adios2:ci-el7-base - -# Install extra system dev packages -RUN yum -y install hdf5-devel python36-numpy - -# Install ZFP -WORKDIR /opt/zfp -RUN curl -L https://github.com/LLNL/zfp/releases/download/0.5.5/zfp-0.5.5.tar.gz | tar -xvz && \ - mkdir build && \ - cd build && \ - cmake -DBUILD_SHARED_LIBS=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/zfp/0.5.5 ../zfp-0.5.5 && \ - make -j$(grep -c '^processor' /proc/cpuinfo) install && \ - cd .. && \ - rm -rf zfp-0.5.5 build -ENV PATH=/opt/zfp/0.5.5/bin:${PATH} \ - LD_LIBRARY_PATH=/opt/zfp/0.5.5/lib64:${LD_LIBRARY_PATH} \ - CMAKE_PREFIX_PATH=/opt/zfp/0.5.5:${CMAKE_PREFIX_PATH} - -# Install SZ -WORKDIR /opt/sz -RUN curl -L https://github.com/disheng222/SZ/archive/v2.1.8.3.tar.gz | tar -xvz && \ - mkdir build && \ - cd build && \ - cmake -DBUILD_SHARED_LIBS=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/sz/2.1.8.3 ../SZ-2.1.8.3 && \ - make -j$(grep -c '^processor' /proc/cpuinfo) install && \ - cd .. && \ - rm -rf SZ-2.1.8.3 build -ENV PATH /opt/sz/2.1.8.3/bin:${PATH} -ENV LD_LIBRARY_PATH /opt/sz/2.1.8.3/lib64:${LD_LIBRARY_PATH} -ENV CMAKE_PREFIX_PATH /opt/sz/2.1.8.3:${CMAKE_PREFIX_PATH} - -# Misc cleanup of unneeded files -RUN yum clean all && \ - rm -rfv /tmp/* /var/cache/yum diff --git a/scripts/ci/images/nodejs-static/Dockerfile b/scripts/ci/images/nodejs-static/Dockerfile deleted file mode 100644 index c7ede00ffb..0000000000 --- a/scripts/ci/images/nodejs-static/Dockerfile +++ /dev/null @@ -1,12 +0,0 @@ -# Compile a fully static node.js binary for use by github actions -FROM alpine:3.11.3 -RUN apk add git python gcc g++ linux-headers make -ARG TAG=v12.16.3 -RUN git clone -b ${TAG} --single-branch --depth 1 https://github.com/nodejs/node && \ - cd node && \ - ./configure --fully-static --enable-static && \ - make -j$(grep -c '^processor' /proc/cpuinfo) - -FROM scratch -COPY --from=0 /node/out/Release/node /node -CMD /node diff --git a/scripts/ci/images-v2/oneAPI.repo b/scripts/ci/images/oneAPI.repo similarity index 100% rename from scripts/ci/images-v2/oneAPI.repo rename to scripts/ci/images/oneAPI.repo diff --git a/scripts/ci/images-v2/packages.yaml b/scripts/ci/images/packages.yaml similarity index 100% rename from scripts/ci/images-v2/packages.yaml rename to scripts/ci/images/packages.yaml diff --git a/scripts/ci/images-v2/specs.yaml b/scripts/ci/images/specs.yaml similarity index 100% rename from scripts/ci/images-v2/specs.yaml rename to scripts/ci/images/specs.yaml diff --git a/scripts/ci/images/suse-nvhpcsdk-base/.gitignore b/scripts/ci/images/suse-nvhpcsdk-base/.gitignore deleted file mode 100644 index a8ab452162..0000000000 --- a/scripts/ci/images/suse-nvhpcsdk-base/.gitignore +++ /dev/null @@ -1 +0,0 @@ -nvhpc*.tar.gz diff --git a/scripts/ci/images/suse-nvhpcsdk-base/Dockerfile b/scripts/ci/images/suse-nvhpcsdk-base/Dockerfile deleted file mode 100644 index 3a5b6854cb..0000000000 --- a/scripts/ci/images/suse-nvhpcsdk-base/Dockerfile +++ /dev/null @@ -1,84 +0,0 @@ -FROM opensuse/leap:15.2 - -# Install core dev packages -RUN zypper addrepo -fc https://download.opensuse.org/repositories/devel:/tools:/scm/openSUSE_Leap_15.2/devel:tools:scm.repo -RUN zypper --gpg-auto-import-keys ref -RUN zypper in -y gcc gcc-c++ gcc-fortran git make curl tar f2c glibc-locale \ - glibc-devel libbz2-devel pkg-config zeromq-devel zlib-devel gdb vim valgrind \ - bzip2 gzip blosc-devel libzstd-devel libopenssl-devel Modules - -# Workaround so pgi can find g77 -WORKDIR /usr/bin -RUN ln -s gfortran g77 - -# Install NVidia HPC SDK -WORKDIR /tmp/nvhpcsdk-install -COPY nvhpc_2020_209_Linux_x86_64_cuda_11.0.tar.gz . -RUN tar -xzf nvhpc_2020_209_Linux_x86_64_cuda_11.0.tar.gz && \ - cd nvhpc_2020_209_Linux_x86_64_cuda_11.0 && \ - export \ - NVHPC_SILENT=true \ - NVHPC_INSTALL_DIR=/opt/nvidia/hpc_sdk \ - NVHPC_INSTALL_TYPE=single && \ - ./install && \ - echo 'export MODULEPATH=/opt/nvidia/hpc_sdk/modulefiles:${MODULEPATH}' > /etc/profile.d/nvhpc-modules.sh && \ - echo 'setenv MODULEPATH /opt/nvidia/hpc_sdk/modulefiles:${MODULEPATH}' > /etc/profile.d/pgi-modules.csh - -# Remove all the CUDA components since we don't need them for CI images -WORKDIR /opt/nvidia/hpc_sdk -RUN rm -rf \ - Linux_x86_64/2020 \ - Linux_x86_64/20.9/cuda \ - Linux_x86_64/20.9/math \ - Linux_x86_64/20.9/profilers \ - Linux_x86_64/20.9/examples \ - Linux_x86_64/20.9/REDIST \ - modulefiles/nvhpc-byo-compiler && \ - sed -e '/cuda/d' -e '/math/d' -i modulefiles/*/* - -# Install the most recent CMake nightly binary -WORKDIR /opt/cmake -RUN curl -L https://cmake.org/files/dev/$(curl https://cmake.org/files/dev/ | sed -n '/Linux-x86_64.tar.gz/s/.*>\(cmake[^<]*\)<.*/\1/p' | sort | tail -1) | tar --strip-components=1 -xzv -ENV PATH=/opt/cmake/bin:${PATH} - -# Install ZFP -# Note that ZFP needs to be built with GCC at the moment as the results -# are broken when built with PGI -WORKDIR /opt/zfp -RUN curl -L https://github.com/LLNL/zfp/releases/download/0.5.5/zfp-0.5.5.tar.gz | tar -xvz && \ - mkdir build && \ - cd build && \ - /opt/cmake/bin/cmake \ - -DBUILD_SHARED_LIBS=ON \ - -DCMAKE_BUILD_TYPE=Release \ - -DCMAKE_INSTALL_PREFIX=/opt/zfp/0.5.5 \ - ../zfp-0.5.5 && \ - make -j$(grep -c '^processor' /proc/cpuinfo) install && \ - cd .. && \ - rm -rf zfp-0.5.5 build -ENV PATH=/opt/zfp/0.5.5/bin:${PATH} \ - LD_LIBRARY_PATH=/opt/zfp/0.5.5/lib64:${LD_LIBRARY_PATH} \ - CMAKE_PREFIX_PATH=/opt/zfp/0.5.5:${CMAKE_PREFIX_PATH} - -# Install SZ -WORKDIR /opt/sz -RUN curl -L https://github.com/szcompressor/SZ/releases/download/v2.1.11/SZ-2.1.11.tar.gz | tar -xvz && \ - mkdir build && \ - cd build && \ - source /etc/profile && \ - module load nvhpc-nompi && \ - /opt/cmake/bin/cmake \ - -DBUILD_SHARED_LIBS=ON \ - -DCMAKE_BUILD_TYPE=Release \ - -DCMAKE_INSTALL_PREFIX=/opt/sz/2.1.11 \ - ../SZ-2.1.11 && \ - make -j$(grep -c '^processor' /proc/cpuinfo) install && \ - cd .. && \ - rm -rf SZ-2.1.11 build -ENV PATH=/opt/sz/2.1.11/bin:${PATH} \ - LD_LIBRARY_PATH=/opt/sz/2.1.11/lib64:${LD_LIBRARY_PATH} \ - CMAKE_PREFIX_PATH=/opt/sz/2.1.11:${CMAKE_PREFIX_PATH} - -# Misc cleanup of unneeded files -RUN rm -rf /tmp/* && \ - zypper clean diff --git a/scripts/ci/images/suse-nvhpcsdk-openmpi/Dockerfile b/scripts/ci/images/suse-nvhpcsdk-openmpi/Dockerfile deleted file mode 100644 index 17d37572fb..0000000000 --- a/scripts/ci/images/suse-nvhpcsdk-openmpi/Dockerfile +++ /dev/null @@ -1,31 +0,0 @@ -FROM ornladios/adios2:ci-suse-nvhpcsdk-base - -# Install HDF5 1.13.0 -WORKDIR /opt/hdf5 -RUN curl -L https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.13/hdf5-1.13.0/src/hdf5-1.13.0.tar.bz2 | \ - tar -xvj && \ - mkdir build && \ - cd build && \ - source /etc/profile && \ - module load nvhpc && \ - /opt/cmake/bin/cmake \ - -DCMAKE_INSTALL_PREFIX=/opt/hdf5/1.13.0 \ - -DBUILD_SHARED_LIBS=ON \ - -DBUILD_STATIC_LIBS=OFF \ - -DCMAKE_BUILD_TYPE=Release \ - -DHDF5_ENABLE_PARALLEL=ON \ - -DHDF5_BUILD_CPP_LIB=OFF\ - -DHDF5_BUILD_EXAMPLES=OFF \ - -DBUILD_TESTING=OFF \ - -DHDF5_BUILD_TOOLS=OFF \ - ../hdf5-1.13.0 && \ - make -j$(grep -c '^processor' /proc/cpuinfo) install && \ - cd .. && \ - rm -rf hdf5-1.13.0 build -ENV PATH=/opt/hdf5/1.13.0/bin:${PATH} \ - LD_LIBRARY_PATH=/opt/hdf5/1.13.0/lib:${LD_LIBRARY_PATH} \ - CMAKE_PREFIX_PATH=/opt/hdf5/1.13.0:${CMAKE_PREFIX_PATH} - -# Misc cleanup of unneeded files -RUN rm -rf /tmp/* && \ - zypper clean diff --git a/scripts/ci/images/suse-nvhpcsdk/Dockerfile b/scripts/ci/images/suse-nvhpcsdk/Dockerfile deleted file mode 100644 index bf8d6ebc51..0000000000 --- a/scripts/ci/images/suse-nvhpcsdk/Dockerfile +++ /dev/null @@ -1,31 +0,0 @@ -FROM ornladios/adios2:ci-suse-nvhpcsdk-base - -# Install HDF5 -WORKDIR /opt/hdf5 -RUN curl -L https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.13/hdf5-1.13.0/src/hdf5-1.13.0.tar.bz2 | \ - tar -xvj && \ - mkdir build && \ - cd build && \ - source /etc/profile && \ - module load nvhpc-nompi && \ - /opt/cmake/bin/cmake \ - -DCMAKE_INSTALL_PREFIX=/opt/hdf5/1.13.0 \ - -DBUILD_SHARED_LIBS=ON \ - -DBUILD_STATIC_LIBS=OFF \ - -DCMAKE_BUILD_TYPE=Release \ - -DHDF5_ENABLE_PARALLEL=OFF \ - -DHDF5_BUILD_CPP_LIB=OFF\ - -DHDF5_BUILD_EXAMPLES=OFF \ - -DBUILD_TESTING=OFF \ - -DHDF5_BUILD_TOOLS=OFF \ - ../hdf5-1.13.0 && \ - make -j$(grep -c '^processor' /proc/cpuinfo) install && \ - cd .. && \ - rm -rf hdf5-1.13.0 build -ENV PATH=/opt/hdf5/1.13.0/bin:${PATH} \ - LD_LIBRARY_PATH=/opt/hdf5/1.13.0/lib:${LD_LIBRARY_PATH} \ - CMAKE_PREFIX_PATH=/opt/hdf5/1.13.0:${CMAKE_PREFIX_PATH} - -# Misc cleanup of unneeded files -RUN rm -rf /tmp/* && \ - zypper clean diff --git a/scripts/dashboard/nightly/aaargh-clang-asan.cmake b/scripts/dashboard/nightly/aaargh-clang-asan.cmake deleted file mode 100644 index ea185d2986..0000000000 --- a/scripts/dashboard/nightly/aaargh-clang-asan.cmake +++ /dev/null @@ -1,29 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "aaargh.kitware.com") -set(CTEST_BUILD_CONFIGURATION Debug) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j36") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 36) - -set(CTEST_BUILD_NAME "Linux-EL7_Clang5_ASan") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) - -set(CTEST_MEMORYCHECK_TYPE "AddressSanitizer") -set(dashboard_do_memcheck ON) -set(dashboard_track "Analysis") - -set(ENV{CC} /opt/clang/latest/bin/clang) -set(ENV{CXX} /opt/clang/latest/bin/clang++) - -set(dashboard_cache " -CMAKE_C_FLAGS=-fsanitize=address -fno-omit-frame-pointer -CMAKE_CXX_FLAGS=-fsanitize=address -fno-omit-frame-pointer - -ADIOS2_USE_Fortran:STRING=OFF -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/aaargh-clang-msan.cmake b/scripts/dashboard/nightly/aaargh-clang-msan.cmake deleted file mode 100644 index d552889417..0000000000 --- a/scripts/dashboard/nightly/aaargh-clang-msan.cmake +++ /dev/null @@ -1,29 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "aaargh.kitware.com") -set(CTEST_BUILD_CONFIGURATION Debug) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j36") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 36) - -set(CTEST_BUILD_NAME "Linux-EL7_Clang5_MSan") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) - -set(CTEST_MEMORYCHECK_TYPE "MemorySanitizer") -set(dashboard_do_memcheck ON) -set(dashboard_track "Analysis") - -set(ENV{CC} /opt/clang/latest/bin/clang) -set(ENV{CXX} /opt/clang/latest/bin/clang++) - -set(dashboard_cache " -CMAKE_C_FLAGS=-fsanitize=memory -fno-omit-frame-pointer -CMAKE_CXX_FLAGS=-fsanitize=memory -fno-omit-frame-pointer - -ADIOS2_USE_Fortran:STRING=OFF -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/aaargh-gcc7-coverity.cmake b/scripts/dashboard/nightly/aaargh-gcc7-coverity.cmake deleted file mode 100644 index c4878aacb1..0000000000 --- a/scripts/dashboard/nightly/aaargh-gcc7-coverity.cmake +++ /dev/null @@ -1,66 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "aaargh.kitware.com") -set(CTEST_BUILD_CONFIGURATION Debug) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_COMMAND "cov-build --dir cov-int make") -set(CTEST_BUILD_FLAGS "-k -j36") - -set(CTEST_BUILD_NAME "Linux-EL7_GCC7_Coverity") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load gnu7) -module(load py2-numpy) -module(load hdf5) - -set(ENV{PATH} "/opt/coverity/cov-analysis-linux64-2017.07/bin:$ENV{PATH}") -set(dashboard_do_test OFF) -set(dashboard_track "Analysis") - -set(ENV{CC} gcc) -set(ENV{CXX} g++) -set(ENV{FC} gfortran) - -set(dashboard_cache " -ADIOS2_USE_BZip2:STRING=ON -ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=OFF -ADIOS2_USE_Python:STRING=ON -ADIOS2_USE_SZ:STRING=ON -ZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -ADIOS2_USE_ZFP:STRING=ON -ADIOS2_USE_ZeroMQ:STRING=ON - -PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2.7 -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) - -message("Collecting Coverity scan results") -execute_process( - COMMAND ${CMAKE_COMMAND} -E tar cvfJ ${CTEST_BUILD_NAME}.tar.xz -- cov-int - WORKING_DIRECTORY ${CTEST_DASHBOARD_ROOT}/ADIOS2-build -) - -message("Determining source version") -execute_process( - COMMAND git describe - WORKING_DIRECTORY ${CTEST_DASHBOARD_ROOT}/ADIOS2 - OUTPUT_VARIABLE adios2_version -) - -message("Uploading Coverity scan results") -execute_process( - COMMAND curl - --form token=$ENV{ADIOS2_COVERITY_SUBMIT_TOKEN} - --form email=chuck.atkins@kitware.com - --form version="${adios2_version}" - --form description="Nightly NoMPI" - --form file=@${CTEST_BUILD_NAME}.tar.xz - "https://scan.coverity.com/builds?project=ornladios%2FADIOS2" - WORKING_DIRECTORY ${CTEST_DASHBOARD_ROOT}/ADIOS2-build -) diff --git a/scripts/dashboard/nightly/aaargh-gcc7-gcov.cmake b/scripts/dashboard/nightly/aaargh-gcc7-gcov.cmake deleted file mode 100644 index 91109f644c..0000000000 --- a/scripts/dashboard/nightly/aaargh-gcc7-gcov.cmake +++ /dev/null @@ -1,44 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "aaargh.kitware.com") -set(CTEST_BUILD_CONFIGURATION Debug) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j36") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) - -set(CTEST_BUILD_NAME "Linux-EL7_GCC7_GCov") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load gnu7) -module(load py2-numpy) -module(load hdf5) - -find_program(CTEST_COVERAGE_COMMAND gcov) -set(dashboard_do_coverage ON) -set(dashboard_track "Analysis") - -set(ENV{CC} gcc) -set(ENV{CXX} g++) -set(ENV{FC} gfortran) - -set(dashboard_cache " -CMAKE_C_FLAGS:STRING=--coverage -CMAKE_CXX_FLAGS:STRING=--coverage - -ADIOS2_USE_BZip2:STRING=ON -ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=OFF -ADIOS2_USE_Python:STRING=ON -ADIOS2_USE_SZ:STRING=ON -ZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -ADIOS2_USE_ZFP:STRING=ON -ADIOS2_USE_ZeroMQ:STRING=ON - -PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2.7 -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/aaargh-gcc7-mpich-gcov.cmake b/scripts/dashboard/nightly/aaargh-gcc7-mpich-gcov.cmake deleted file mode 100644 index 8f8d2198db..0000000000 --- a/scripts/dashboard/nightly/aaargh-gcc7-mpich-gcov.cmake +++ /dev/null @@ -1,49 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "aaargh.kitware.com") -set(CTEST_BUILD_CONFIGURATION Debug) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j36") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) - -set(CTEST_BUILD_NAME "Linux-EL7_GCC7_MPICH_GCov") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load gnu7) -module(load py2-numpy) -module(load mpich) -module(load phdf5) -module(load py2-mpi4py) -module(load adios) - -find_program(CTEST_COVERAGE_COMMAND gcov) -set(dashboard_do_coverage ON) -set(dashboard_track "Analysis") - -set(ENV{CC} gcc) -set(ENV{CXX} g++) -set(ENV{FC} gfortran) - -set(dashboard_cache " -CMAKE_C_FLAGS:STRING=--coverage -CMAKE_CXX_FLAGS:STRING=--coverage - -ADIOS2_USE_BZip2:STRING=ON -ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=ON -ADIOS2_USE_Python:STRING=ON -ADIOS2_USE_SZ:STRING=ON -ZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -ADIOS2_USE_ZFP:STRING=ON -ADIOS2_USE_ZeroMQ:STRING=ON - -MPIEXEC_MAX_NUMPROCS:STRING=16 - -PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2.7 -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/aaargh-gcc7-mpich.cmake b/scripts/dashboard/nightly/aaargh-gcc7-mpich.cmake deleted file mode 100644 index 6c4d6d8580..0000000000 --- a/scripts/dashboard/nightly/aaargh-gcc7-mpich.cmake +++ /dev/null @@ -1,46 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "aaargh.kitware.com") -set(CTEST_BUILD_CONFIGURATION Debug) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j36") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) - -set(CTEST_BUILD_NAME "Linux-EL7_GCC7_MPICH") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load gnu7) -module(load py2-numpy) -module(load mpich) -module(load phdf5) -module(load py2-mpi4py) -module(load adios) - -module(load valgrind) -find_program(CTEST_MEMORYCHECK_COMMAND valgrind) -set(dashboard_do_memcheck ON) - -set(ENV{CC} gcc) -set(ENV{CXX} g++) -set(ENV{FC} gfortran) - -set(dashboard_cache " -ADIOS2_USE_BZip2:STRING=ON -ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=ON -ADIOS2_USE_Python:STRING=ON -ADIOS2_USE_SZ:STRING=ON -ZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -ADIOS2_USE_ZFP:STRING=ON -ADIOS2_USE_ZeroMQ:STRING=ON - -MPIEXEC_MAX_NUMPROCS:STRING=16 - -PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2.7 -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/aaargh-gcc7-valgrind.cmake b/scripts/dashboard/nightly/aaargh-gcc7-valgrind.cmake deleted file mode 100644 index 283afdbbae..0000000000 --- a/scripts/dashboard/nightly/aaargh-gcc7-valgrind.cmake +++ /dev/null @@ -1,42 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "aaargh.kitware.com") -set(CTEST_BUILD_CONFIGURATION Debug) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j36") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 36) - -set(CTEST_BUILD_NAME "Linux-EL7_GCC7_Valgrind") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load gnu7) -module(load hdf5) -module(load py2-numpy) - -module(load valgrind) -find_program(CTEST_MEMORYCHECK_COMMAND valgrind) -set(dashboard_track "Analysis") -set(dashboard_do_test OFF) -set(dashboard_do_memcheck ON) - -set(ENV{CC} gcc) -set(ENV{CXX} g++) -set(ENV{FC} gfortran) - -set(dashboard_cache " -ADIOS2_USE_BZip2:STRING=ON -ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=OFF -ADIOS2_USE_Python:STRING=OFF -ADIOS2_USE_SZ:STRING=ON -ZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -ADIOS2_USE_ZFP:STRING=ON -ADIOS2_USE_ZeroMQ:STRING=ON -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/aaargh-gcc7.cmake b/scripts/dashboard/nightly/aaargh-gcc7.cmake deleted file mode 100644 index a7cb7c7167..0000000000 --- a/scripts/dashboard/nightly/aaargh-gcc7.cmake +++ /dev/null @@ -1,38 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "aaargh.kitware.com") -set(CTEST_BUILD_CONFIGURATION Debug) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j36") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 36) - -set(CTEST_BUILD_NAME "Linux-EL7_GCC7") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load gnu7) -module(load hdf5) -module(load py2-numpy) - -set(ENV{CC} gcc) -set(ENV{CXX} g++) -set(ENV{FC} gfortran) - -set(dashboard_cache " -ADIOS2_USE_BZip2:STRING=ON -ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=OFF -ADIOS2_USE_Python:STRING=ON -ADIOS2_USE_SZ:STRING=ON -ZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -ADIOS2_USE_ZFP:STRING=ON -ADIOS2_USE_ZeroMQ:STRING=ON - -PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python2.7 -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/aaargh-intel17-impi.cmake b/scripts/dashboard/nightly/aaargh-intel17-impi.cmake deleted file mode 100644 index f8c2e680b5..0000000000 --- a/scripts/dashboard/nightly/aaargh-intel17-impi.cmake +++ /dev/null @@ -1,42 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "aaargh.kitware.com") -set(CTEST_BUILD_CONFIGURATION Release) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j36") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) - -set(CTEST_BUILD_NAME "Linux-EL7_Intel17_IntelMPI") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load intel/17.0.6.256) -module(load py3-numpy) -module(load impi/2017.4.256) -module(load phdf5) -module(load py3-mpi4py) -module(load adios) - -set(ENV{CC} icc) -set(ENV{CXX} icpc) -set(ENV{FC} ifort) - -set(dashboard_cache " -ADIOS2_USE_BZip2:STRING=ON -ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=ON -ADIOS2_USE_Python:STRING=ON -ADIOS2_USE_SZ:STRING=ON -ZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -ADIOS2_USE_ZFP:STRING=ON -ADIOS2_USE_ZeroMQ:STRING=ON - -MPIEXEC_MAX_NUMPROCS:STRING=16 - -PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.4 -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/aaargh-intel17.cmake b/scripts/dashboard/nightly/aaargh-intel17.cmake deleted file mode 100644 index 5914d31842..0000000000 --- a/scripts/dashboard/nightly/aaargh-intel17.cmake +++ /dev/null @@ -1,38 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "aaargh.kitware.com") -set(CTEST_BUILD_CONFIGURATION Release) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j36") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 36) - -set(CTEST_BUILD_NAME "Linux-EL7_Intel17") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load intel/17.0.6.256) -module(load hdf5) -module(load py3-numpy) - -set(ENV{CC} icc) -set(ENV{CXX} icpc) -set(ENV{FC} ifort) - -set(dashboard_cache " -ADIOS2_USE_BZip2:STRING=ON -ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=OFF -ADIOS2_USE_Python:STRING=ON -ADIOS2_USE_SZ:STRING=ON -ZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -ADIOS2_USE_ZFP:STRING=ON -ADIOS2_USE_ZeroMQ:STRING=ON - -PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.4 -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/aaargh-intel18-openmpi3.cmake b/scripts/dashboard/nightly/aaargh-intel18-openmpi3.cmake deleted file mode 100644 index d44c9958b6..0000000000 --- a/scripts/dashboard/nightly/aaargh-intel18-openmpi3.cmake +++ /dev/null @@ -1,43 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "aaargh.kitware.com") -set(CTEST_BUILD_CONFIGURATION Release) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j36") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) - -set(CTEST_BUILD_NAME "Linux-EL7_Intel18_OpenMPI") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load intel/18.0.1.163) -module(load py3-numpy) -module(load openmpi3) -module(load phdf5) -module(load py3-mpi4py) -module(load adios) - -set(ENV{CC} icc) -set(ENV{CXX} icpc) -set(ENV{FC} ifort) - -set(dashboard_cache " -ADIOS2_USE_BZip2:STRING=ON -ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=ON -ADIOS2_USE_Python:STRING=ON -ADIOS2_USE_SZ:STRING=ON -ZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -ADIOS2_USE_ZFP:STRING=ON -ADIOS2_USE_ZeroMQ:STRING=ON - -MPIEXEC_MAX_NUMPROCS:STRING=16 - -PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.4 -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/aaargh-intel18.cmake b/scripts/dashboard/nightly/aaargh-intel18.cmake deleted file mode 100644 index 3d700a1ca0..0000000000 --- a/scripts/dashboard/nightly/aaargh-intel18.cmake +++ /dev/null @@ -1,38 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "aaargh.kitware.com") -set(CTEST_BUILD_CONFIGURATION Release) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j36") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 36) - -set(CTEST_BUILD_NAME "Linux-EL7_Intel18") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load intel/18.0.2.199) -module(load hdf5) -module(load py3-numpy) - -set(ENV{CC} icc) -set(ENV{CXX} icpc) -set(ENV{FC} ifort) - -set(dashboard_cache " -ADIOS2_USE_BZip2:STRING=ON -ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=OFF -ADIOS2_USE_Python:STRING=ON -ADIOS2_USE_SZ:STRING=ON -ZLIB_LIBRARY:FILEPATH=/usr/lib64/libz.so -ADIOS2_USE_ZFP:STRING=ON -ADIOS2_USE_ZeroMQ:STRING=ON - -PYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3.4 -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/aaargh.sh b/scripts/dashboard/nightly/aaargh.sh deleted file mode 100755 index 7a710e5395..0000000000 --- a/scripts/dashboard/nightly/aaargh.sh +++ /dev/null @@ -1,49 +0,0 @@ -#!/bin/bash - -# Source any site-specific variables or scripts -if [ -f ${HOME}/.dashboard ] -then - source ${HOME}/.dashboard -fi - -function log() -{ - local TIMESTAMP=$(date +"%Y%m%dT%T.%N") - echo "${TIMESTAMP} " "$@" | tee -a Logs/aaargh.log -} - -mkdir -p ${HOME}/Dashboards/ADIOS2 -cd ${HOME}/Dashboards/ADIOS2 - -mkdir -p Logs -rm -f Logs/aaargh.log - -module purge -module load cmake - -CTEST=$(which ctest) - -if [ ! -d Source/.git ] -then - git clone https://github.com/ornladios/adios2.git Source -else - pushd Source - git fetch --all -p - git checkout -f master - git pull --ff-only - popd -fi -SCRIPT_DIR=${PWD}/Source/scripts/dashboard/nightly - -# Make sure we have a newer binutils available - -source /opt/rh/devtoolset-7/enable - -export ZFP_ROOT=${HOME}/Dashboards/Support/zfp/0.5.3 -export SZ_ROOT=${HOME}/Dashboards/Support/sz/master - -for F in gcc7 intel17 intel18 gcc7-mpich intel17-impi intel18-openmpi gcc7-gcov gcc7-mpich-gcov gcc7-valgrind clang5-asan clang5-msan gcc7-coverity -do - log "Running ${F}" - ${CTEST} -VV -S ${SCRIPT_DIR}/aaargh-${F}.cmake 2>&1 1>Logs/aaargh-${F}.log -done diff --git a/scripts/dashboard/nightly/cori-cray-mpich.cmake b/scripts/dashboard/nightly/cori-cray-mpich.cmake deleted file mode 100644 index 0aa5498b45..0000000000 --- a/scripts/dashboard/nightly/cori-cray-mpich.cmake +++ /dev/null @@ -1,44 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "cori.nersc.gov") -set(CTEST_BUILD_CONFIGURATION Release) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j10") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) - -set(CTEST_BUILD_NAME "Linux-CrayCLE6-KNL_Cray_CrayMPICH") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load modules) -module(load craype) -module(load PrgEnv-cray) -module(swap cce cce/8.6.2) -module(load craype-mic-knl) -module(load cray-mpich) -module(load cray-hdf5-parallel) -module(load cray-python) -module(load git) - -set(ENV{CC} cc) -set(ENV{CXX} CC) -set(ENV{FC} ftn) - -set(dashboard_cache " -#ADIOS2_USE_BZip2:STRING=ON -#ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=ON -#ADIOS2_USE_Python:STRING=ON -#ADIOS2_USE_ZFP:STRING=ON -#ADIOS2_USE_ZeroMQ:STRING=ON - -MPIEXEC_EXECUTABLE:FILEPATH=srun -MPIEXEC_MAX_NUMPROCS:STRING= -MPIEXEC_NUMPROC_FLAG:STRING=-n8;-c16 -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/cori-gcc-mpich.cmake b/scripts/dashboard/nightly/cori-gcc-mpich.cmake deleted file mode 100644 index 93422b0480..0000000000 --- a/scripts/dashboard/nightly/cori-gcc-mpich.cmake +++ /dev/null @@ -1,43 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "cori.nersc.gov") -set(CTEST_BUILD_CONFIGURATION Release) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j10") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) - -set(CTEST_BUILD_NAME "Linux-CrayCLE6-KNL_GCC_CrayMPICH") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load modules) -module(load craype) -module(load PrgEnv-gnu) -module(load craype-mic-knl) -module(load cray-mpich) -module(load cray-hdf5-parallel) -module(load cray-python) -module(load git) - -set(ENV{CC} cc) -set(ENV{CXX} CC) -set(ENV{FC} ftn) - -set(dashboard_cache " -#ADIOS2_USE_BZip2:STRING=ON -#ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=ON -#ADIOS2_USE_Python:STRING=ON -#ADIOS2_USE_ZFP:STRING=ON -#ADIOS2_USE_ZeroMQ:STRING=ON - -MPIEXEC_EXECUTABLE:FILEPATH=srun -MPIEXEC_MAX_NUMPROCS:STRING= -MPIEXEC_NUMPROC_FLAG:STRING=-n8;-c16 -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/cori-intel-mpich.cmake b/scripts/dashboard/nightly/cori-intel-mpich.cmake deleted file mode 100644 index 409b1a77bd..0000000000 --- a/scripts/dashboard/nightly/cori-intel-mpich.cmake +++ /dev/null @@ -1,43 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "cori.nersc.gov") -set(CTEST_BUILD_CONFIGURATION Release) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j10") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) - -set(CTEST_BUILD_NAME "Linux-CrayCLE6-KNL_Intel_CrayMPICH") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load modules) -module(load craype) -module(load PrgEnv-intel) -module(load craype-mic-knl) -module(load cray-mpich) -module(load cray-hdf5-parallel) -module(load cray-python) -module(load git) - -set(ENV{CC} cc) -set(ENV{CXX} CC) -set(ENV{FC} ftn) - -set(dashboard_cache " -#ADIOS2_USE_BZip2:STRING=ON -#ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=ON -#ADIOS2_USE_Python:STRING=ON -#ADIOS2_USE_ZFP:STRING=ON -#ADIOS2_USE_ZeroMQ:STRING=ON - -MPIEXEC_EXECUTABLE:FILEPATH=srun -MPIEXEC_MAX_NUMPROCS:STRING= -MPIEXEC_NUMPROC_FLAG:STRING=-n8;-c16 -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/cori-mpich-tests.slurm b/scripts/dashboard/nightly/cori-mpich-tests.slurm deleted file mode 100755 index 7c154be89d..0000000000 --- a/scripts/dashboard/nightly/cori-mpich-tests.slurm +++ /dev/null @@ -1,30 +0,0 @@ -#!/bin/bash -#SBATCH -A m2886 -#SBATCH -p debug -#SBATCH -N 2 -#SBATCH -t 0:30:00 -#SBATCH -n 8 -#SBATCH -J adios_nightly -#SBATCH -C knl,quad,cache - -case ${SLURM_ARRAY_TASK_ID} in - 1) CTEST_COMPILER=gcc - ;; - 2) CTEST_COMPILER=intel - ;; - 3) CTEST_COMPILER=cray - ;; - *) echo "Error: Unsupported SLURM_ARRAY_TASK_ID: ${SLURM_ARRAY_TASK_ID}" - exit - ;; -esac - -echo "SLURM_ARRAY_TASK_ID: ${SLURM_ARRAY_TASK_ID}" -echo "CTEST_COMPILER: ${CTEST_COMPILER}" - -CTEST=${HOME}/dashboards/cori/support/CMake/install/v3.9.5/bin/ctest -SCRIPT_DIR=${PWD}/Source/scripts/dashboard/nightly -${CTEST} -VV -S ${SCRIPT_DIR}/cori-${CTEST_COMPILER}-mpich.cmake \ - -Ddashboard_full=OFF \ - -Ddashboard_do_test=ON \ - -Ddashboard_do_submit=OFF 2>&1 1>>Logs/cori-${CTEST_COMPILER}-mpich.log diff --git a/scripts/dashboard/nightly/cori.sh b/scripts/dashboard/nightly/cori.sh deleted file mode 100755 index 14202a92e9..0000000000 --- a/scripts/dashboard/nightly/cori.sh +++ /dev/null @@ -1,90 +0,0 @@ -#!/bin/bash - -function log() -{ - local TIMESTAMP=$(date +"%Y%m%dT%T.%N") - echo "${TIMESTAMP} " "$@" | tee -a Logs/cori.log -} - -mkdir -p ${HOME}/dashboards/cori/adios2 -cd ${HOME}/dashboards/cori/adios2 -mkdir -p Logs -rm -f Logs/cori.log - -module load git - -CTEST=${HOME}/dashboards/cori/support/CMake/install/v3.9.5/bin/ctest - -if [ ! -d Source/.git ] -then - git clone https://github.com/ornladios/adios2.git Source -else - pushd Source - git fetch --all -p - git checkout -f master - git pull --ff-only - popd -fi -SCRIPT_DIR=${PWD}/Source/scripts/dashboard/nightly - -# Run the configure and build steps for the MPI tests -log "Running Parallel GCC Build" -${CTEST} -VV -S ${SCRIPT_DIR}/cori-gcc-mpich.cmake \ - -Ddashboard_full=OFF \ - -Ddashboard_fresh=ON \ - -Ddashboard_do_checkout=ON \ - -Ddashboard_do_update=ON \ - -Ddashboard_do_configure=ON \ - -Ddashboard_do_build=ON 2>&1 1>Logs/cori-gcc-mpich.log - -log "Running Parallel Intel Build" -${CTEST} -VV -S ${SCRIPT_DIR}/cori-intel-mpich.cmake \ - -Ddashboard_full=OFF \ - -Ddashboard_fresh=ON \ - -Ddashboard_do_checkout=ON \ - -Ddashboard_do_update=ON \ - -Ddashboard_do_configure=ON \ - -Ddashboard_do_build=ON 2>&1 1>Logs/cori-intel-mpich.log - -log "Running Parallel Cray Build" -${CTEST} -VV -S ${SCRIPT_DIR}/cori-cray-mpich.cmake \ - -Ddashboard_full=OFF \ - -Ddashboard_fresh=ON \ - -Ddashboard_do_checkout=ON \ - -Ddashboard_do_update=ON \ - -Ddashboard_do_configure=ON \ - -Ddashboard_do_build=ON 2>&1 1>Logs/cori-cray-mpich.log - -# Now run the MPI tests in a batch job -log "Submitting Parallel Tests" -JOBID=$(sbatch --array=1-3 ${SCRIPT_DIR}/cori-mpich-tests.slurm | awk '{print $4}') -sleep 30 -while true -do - NJOBS=$(sacct -n -P --delimiter ' ' -s CF,CG,PD,R,RS -j ${JOBID} | wc -l) - log "Test jobs active in queue for job array ${JOBID}: ${NJOBS}" - if [ ${NJOBS} -eq 0 ] - then - break - fi - sleep 30 -done - -# Finaly submit the test results from the batch job -log "Submitting Parallel GCC Test Results" -${CTEST} -VV -S ${SCRIPT_DIR}/cori-gcc-mpich.cmake \ - -Ddashboard_full=OFF \ - -Ddashboard_do_test=ON \ - -Ddashboard_do_submit_only=ON 2>&1 1>>Logs/cori-gcc-mpich.log - -log "Submitting Parallel Intel Test Results" -${CTEST} -VV -S ${SCRIPT_DIR}/cori-intel-mpich.cmake \ - -Ddashboard_full=OFF \ - -Ddashboard_do_test=ON \ - -Ddashboard_do_submit_only=ON 2>&1 1>>Logs/cori-intel-mpich.log - -log "Submitting Parallel Cray Test Results" -${CTEST} -VV -S ${SCRIPT_DIR}/cori-cray-mpich.cmake \ - -Ddashboard_full=OFF \ - -Ddashboard_do_test=ON \ - -Ddashboard_do_submit_only=ON 2>&1 1>>Logs/cori-cray-mpich.log diff --git a/scripts/dashboard/nightly/summitdev-gcc-nompi.cmake b/scripts/dashboard/nightly/summitdev-gcc-nompi.cmake deleted file mode 100644 index d5db805685..0000000000 --- a/scripts/dashboard/nightly/summitdev-gcc-nompi.cmake +++ /dev/null @@ -1,34 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "summitdev.ccs.ornl.gov") -set(CTEST_BUILD_CONFIGURATION Release) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j10") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 10) - -set(CTEST_BUILD_NAME "Linux-EL7-PPC64LE_GCC-7.1.0_NoMPI") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load git) -module(load gcc/7.1.0) -module(load hdf5) - -set(ENV{CC} gcc) -set(ENV{CXX} g++) -set(ENV{FC} gfortran) - -set(dashboard_cache " -#ADIOS2_USE_BZip2:STRING=ON -#ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -#ADIOS2_USE_HDF5:STRING=ON -#ADIOS2_USE_MPI:STRING=ON -#ADIOS2_USE_Python:STRING=ON -#ADIOS2_USE_ZFP:STRING=ON -#ADIOS2_USE_ZeroMQ:STRING=ON -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/summitdev-gcc-spectrum.cmake b/scripts/dashboard/nightly/summitdev-gcc-spectrum.cmake deleted file mode 100644 index f5c3aa316f..0000000000 --- a/scripts/dashboard/nightly/summitdev-gcc-spectrum.cmake +++ /dev/null @@ -1,40 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "summitdev.ccs.ornl.gov") -set(CTEST_BUILD_CONFIGURATION Release) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j10") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) - -set(CTEST_BUILD_NAME "Linux-EL7-PPC64LE_GCC-7.1.0_SpectrumMPI") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load git) -module(load gcc/7.1.0) -module(load spectrum-mpi) -module(load lsf-tools) -module(load hdf5) - -set(ENV{CC} gcc) -set(ENV{CXX} g++) -set(ENV{FC} gfortran) - -set(dashboard_cache " -#ADIOS2_USE_BZip2:STRING=ON -#ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -#ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=ON -#ADIOS2_USE_Python:STRING=ON -#ADIOS2_USE_ZFP:STRING=ON -#ADIOS2_USE_ZeroMQ:STRING=ON - -MPIEXEC_EXECUTABLE:FILEPATH=jsrun -MPIEXEC_MAX_NUMPROCS:STRING= -MPIEXEC_NUMPROC_FLAG:STRING=-n4;-r2;-a10 -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/summitdev-pgi-nompi.cmake b/scripts/dashboard/nightly/summitdev-pgi-nompi.cmake deleted file mode 100644 index 3849fb4740..0000000000 --- a/scripts/dashboard/nightly/summitdev-pgi-nompi.cmake +++ /dev/null @@ -1,34 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "summitdev.ccs.ornl.gov") -set(CTEST_BUILD_CONFIGURATION Release) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j10") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 10) - -set(CTEST_BUILD_NAME "Linux-EL7-PPC64LE_PGI-17.9_NoMPI") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load git) -module(load pgi/17.9) -module(load hdf5) - -set(ENV{CC} pgcc) -set(ENV{CXX} pgc++) -set(ENV{FC} pgfortran) - -set(dashboard_cache " -#ADIOS2_USE_BZip2:STRING=ON -#ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -#ADIOS2_USE_HDF5:STRING=ON -#ADIOS2_USE_MPI:STRING=ON -#ADIOS2_USE_Python:STRING=ON -#ADIOS2_USE_ZFP:STRING=ON -#ADIOS2_USE_ZeroMQ:STRING=ON -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/summitdev-pgi-spectrum.cmake b/scripts/dashboard/nightly/summitdev-pgi-spectrum.cmake deleted file mode 100644 index 2ba213fd4a..0000000000 --- a/scripts/dashboard/nightly/summitdev-pgi-spectrum.cmake +++ /dev/null @@ -1,40 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "summitdev.ccs.ornl.gov") -set(CTEST_BUILD_CONFIGURATION Release) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j10") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) - -set(CTEST_BUILD_NAME "Linux-EL7-PPC64LE_PGI-17.9_SpectrumMPI") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load git) -module(load pgi/17.9) -module(load spectrum-mpi) -module(load lsf-tools) -module(load hdf5) - -set(ENV{CC} pgcc) -set(ENV{CXX} pgc++) -set(ENV{FC} pgfortran) - -set(dashboard_cache " -#ADIOS2_USE_BZip2:STRING=ON -#ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -#ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=ON -#ADIOS2_USE_Python:STRING=ON -#ADIOS2_USE_ZFP:STRING=ON -#ADIOS2_USE_ZeroMQ:STRING=ON - -MPIEXEC_EXECUTABLE:FILEPATH=jsrun -MPIEXEC_MAX_NUMPROCS:STRING= -MPIEXEC_NUMPROC_FLAG:STRING=-n4;-r2;-a10 -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/summitdev-spectrum-tests.lsf b/scripts/dashboard/nightly/summitdev-spectrum-tests.lsf deleted file mode 100755 index 62f9d485ac..0000000000 --- a/scripts/dashboard/nightly/summitdev-spectrum-tests.lsf +++ /dev/null @@ -1,31 +0,0 @@ -#!/bin/bash -#BSUB -P CSC143SUMMITDEV -#BSUB -W 30 -#BSUB -nnodes 2 -#BSUB -o adios2_nightly.%I.out -#BSUB -e adios2_nightly.%I.err - -case ${LSB_JOBINDEX} in - 1) CTEST_COMPILER=gcc - ;; - 2) CTEST_COMPILER=xl - ;; - 3) CTEST_COMPILER=pgi - ;; - *) echo "Error: Unsupported LSB_JOBINDEX: ${LSB_JOBINDEX}" - exit - ;; -esac - -echo "LSB_JOBINDEX: ${LSB_JOBINDEX}" -echo "CTEST_COMPILER: ${CTEST_COMPILER}" - -module purge -module load git cmake - -CTEST=$(which ctest) -SCRIPT_DIR=${PWD}/source/scripts/dashboard/nightly -${CTEST} -VV -S ${SCRIPT_DIR}/summitdev-${CTEST_COMPILER}-spectrum.cmake \ - -Ddashboard_full=OFF \ - -Ddashboard_do_test=ON \ - -Ddashboard_do_submit=OFF 2>&1 1>>summitdev-${CTEST_COMPILER}-spectrum.log diff --git a/scripts/dashboard/nightly/summitdev-xl-nompi.cmake b/scripts/dashboard/nightly/summitdev-xl-nompi.cmake deleted file mode 100644 index 5aeccb39b5..0000000000 --- a/scripts/dashboard/nightly/summitdev-xl-nompi.cmake +++ /dev/null @@ -1,34 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "summitdev.ccs.ornl.gov") -set(CTEST_BUILD_CONFIGURATION Release) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j10") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 10) - -set(CTEST_BUILD_NAME "Linux-EL7-PPC64LE_XL-13.1.5_NoMPI") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load git) -module(load xl) -module(load hdf5) - -set(ENV{CC} xlc) -set(ENV{CXX} xlC) -set(ENV{FC} xlf) - -set(dashboard_cache " -#ADIOS2_USE_BZip2:STRING=ON -#ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -#ADIOS2_USE_HDF5:STRING=ON -#ADIOS2_USE_MPI:STRING=ON -#ADIOS2_USE_Python:STRING=ON -#ADIOS2_USE_ZFP:STRING=ON -#ADIOS2_USE_ZeroMQ:STRING=ON -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/summitdev-xl-spectrum.cmake b/scripts/dashboard/nightly/summitdev-xl-spectrum.cmake deleted file mode 100644 index 2fbd19dedb..0000000000 --- a/scripts/dashboard/nightly/summitdev-xl-spectrum.cmake +++ /dev/null @@ -1,40 +0,0 @@ -# Client maintainer: chuck.atkins@kitware.com -set(CTEST_SITE "summitdev.ccs.ornl.gov") -set(CTEST_BUILD_CONFIGURATION Release) -set(CTEST_CMAKE_GENERATOR "Unix Makefiles") -set(CTEST_BUILD_FLAGS "-k -j10") -set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) - -set(CTEST_BUILD_NAME "Linux-EL7-PPC64LE_XL-13.1.5_SpectrumMPI") -set(dashboard_model Nightly) -set(CTEST_DASHBOARD_ROOT ${CMAKE_CURRENT_BINARY_DIR}/${CTEST_BUILD_NAME}) - - -include(${CMAKE_CURRENT_LIST_DIR}/../EnvironmentModules.cmake) -module(purge) -module(load git) -module(load xl) -module(load spectrum-mpi) -module(load lsf-tools) -module(load hdf5) - -set(ENV{CC} xlc) -set(ENV{CXX} xlC) -set(ENV{FC} xlf) - -set(dashboard_cache " -#ADIOS2_USE_BZip2:STRING=ON -#ADIOS2_USE_DataMan:STRING=ON -ADIOS2_USE_Fortran:STRING=ON -#ADIOS2_USE_HDF5:STRING=ON -ADIOS2_USE_MPI:STRING=ON -#ADIOS2_USE_Python:STRING=ON -#ADIOS2_USE_ZFP:STRING=ON -#ADIOS2_USE_ZeroMQ:STRING=ON - -MPIEXEC_EXECUTABLE:FILEPATH=jsrun -MPIEXEC_MAX_NUMPROCS:STRING= -MPIEXEC_NUMPROC_FLAG:STRING=-n4;-r2;-a10 -") - -include(${CMAKE_CURRENT_LIST_DIR}/../adios_common.cmake) diff --git a/scripts/dashboard/nightly/summitdev.sh b/scripts/dashboard/nightly/summitdev.sh deleted file mode 100755 index e8661ab321..0000000000 --- a/scripts/dashboard/nightly/summitdev.sh +++ /dev/null @@ -1,98 +0,0 @@ -#!/bin/bash - -function log() -{ - local TIMESTAMP=$(date +"%Y%m%dT%T.%N") - echo "${TIMESTAMP} " "$@" | tee -a summitdev.log -} - -mkdir -p ${HOME}/dashboards/summitdev/adios2 -cd ${HOME}/dashboards/summitdev/adios2 - -rm -f summitdev.log - -module purge -module load git cmake lsf-tools - -CTEST=$(which ctest) - -if [ ! -d source/.git ] -then - git clone https://github.com/ornladios/adios2.git source -else - pushd source - git fetch --all -p - git checkout -f master - git pull --ff-only - popd -fi -SCRIPT_DIR=${PWD}/source/scripts/dashboard/nightly - -# First run the serial tests -log "Running Serial GCC" -${CTEST} -VV -S ${SCRIPT_DIR}/summitdev-gcc-nompi.cmake 2>&1 1>summitdev-gcc-nompi.log -log "Running Serial XL" -${CTEST} -VV -S ${SCRIPT_DIR}/summitdev-xl-nompi.cmake 2>&1 1>summitdev-xl-nompi.log -log "Running Serial XL" -${CTEST} -VV -S ${SCRIPT_DIR}/summitdev-pgi-nompi.cmake 2>&1 1>summitdev-pgi-nompi.log - -# Now run the configure and build steps for the MPI tests -log "Running Parallel GCC Build" -${CTEST} -VV -S ${SCRIPT_DIR}/summitdev-gcc-spectrum.cmake \ - -Ddashboard_full=OFF \ - -Ddashboard_fresh=ON \ - -Ddashboard_do_checkout=ON \ - -Ddashboard_do_update=ON \ - -Ddashboard_do_configure=ON \ - -Ddashboard_do_build=ON 2>&1 1>summitdev-gcc-spectrum.log - -log "Running Parallel XL Build" -${CTEST} -VV -S ${SCRIPT_DIR}/summitdev-xl-spectrum.cmake \ - -Ddashboard_full=OFF \ - -Ddashboard_fresh=ON \ - -Ddashboard_do_checkout=ON \ - -Ddashboard_do_update=ON \ - -Ddashboard_do_configure=ON \ - -Ddashboard_do_build=ON 2>&1 1>summitdev-xl-spectrum.log - -log "Running Parallel PGI Build" -${CTEST} -VV -S ${SCRIPT_DIR}/summitdev-pgi-spectrum.cmake \ - -Ddashboard_full=OFF \ - -Ddashboard_fresh=ON \ - -Ddashboard_do_checkout=ON \ - -Ddashboard_do_update=ON \ - -Ddashboard_do_configure=ON \ - -Ddashboard_do_build=ON 2>&1 1>summitdev-pgi-spectrum.log - -# Now run the MPI tests in a batch job -log "Submitting Parallel Tests" -JOBID=$(bsub -J "adios2_nightly[1-3]" ${SCRIPT_DIR}/summitdev-spectrum-tests.lsf | awk '{print $2}' | sed 's|<\([0-9]*\)>|\1|') -while true -do - NJOBS=$(bjobs 2>/dev/null | grep "^${JOBID} " | wc -l) - log "Test jobs active in queue for job array ${JOBID}: ${NJOBS}" - if [ ${NJOBS} -eq 0 ] - then - break - fi - sleep 30 -done - -# Finaly submit the test results from the batch job -log "Submitting Parallel GCC Test Results" -${CTEST} -VV -S ${SCRIPT_DIR}/summitdev-gcc-spectrum.cmake \ - -Ddashboard_full=OFF \ - -Ddashboard_do_test=ON \ - -Ddashboard_do_submit_only=ON 2>&1 1>>summitdev-gcc-spectrum.log - -log "Submitting Parallel XL Test Results" -${CTEST} -VV -S ${SCRIPT_DIR}/summitdev-xl-spectrum.cmake \ - -Ddashboard_full=OFF \ - -Ddashboard_do_test=ON \ - -Ddashboard_do_submit_only=ON 2>&1 1>>summitdev-xl-spectrum.log - -log "Submitting Parallel PGI Test Results" -${CTEST} -VV -S ${SCRIPT_DIR}/summitdev-pgi-spectrum.cmake \ - -Ddashboard_full=OFF \ - -Ddashboard_do_test=ON \ - -Ddashboard_do_submit_only=ON 2>&1 1>>summitdev-pgi-spectrum.log diff --git a/scripts/dashboard/nightly/valgrind-suppressions.txt b/scripts/dashboard/nightly/valgrind-suppressions.txt deleted file mode 100755 index b4e551ecbc..0000000000 --- a/scripts/dashboard/nightly/valgrind-suppressions.txt +++ /dev/null @@ -1,63 +0,0 @@ -{ - Leak in bash - Memcheck:Leak - ... - obj:/usr/bin/bash -} - -{ - Leak in MPICH MPIEXE - Memcheck:Leak - ... - obj:/opt/ohpc/pub/mpi/mpich-gnu7-ohpc/3.2.1/bin/mpiexec.hydra -} - -{ - Leak in MPICH MPIEXE another attempt at suppression - Memcheck:Leak - ... - fun:HYD_pmci_* - ... -} - -{ - Conditional jump or move depends on uninitialised value(s) in mca_ - Memcheck:Cond - ... - fun:mca_* -} - -{ - Conditional jump or move depends on uninitialised value(s) in MPI - Memcheck:Cond - ... - fun:MPI_* -} - -{ - Leak in MPI - Memcheck:Leak - fun:*alloc - obj:* - ... - fun:MPI_* -} - -{ - Leak in orte_ - Memcheck:Leak - match-leak-kinds: definite - fun:*alloc - obj:* - ... - fun:orte_* -} - -{ - Leak in ompi_ - Memcheck:Leak - fun:*alloc - obj:* - ... - fun:ompi_* -} diff --git a/scripts/travis/run-docker.sh b/scripts/travis/run-docker.sh deleted file mode 100755 index 4ecac97d1b..0000000000 --- a/scripts/travis/run-docker.sh +++ /dev/null @@ -1,54 +0,0 @@ -#!/usr/bin/env bash - -if [ -z "${SOURCE_DIR}" ] -then - echo "Error: SOURCE_DIR is empty or undefined" - exit 1 -fi -if [ -n "${TRAVIS_PULL_REQUEST_SHA}" ] -then - COMMITISH="pr${TRAVIS_PULL_REQUEST}" -else - COMMITISH="${TRAVIS_BRANCH}" -fi - -cd ${SOURCE_DIR} - -case ${BUILD_MATRIX_ENTRY} in - docker-ubuntu1804) - IMAGENAME=ornladios/adios2:ubuntu1804 - if ! docker build --build-arg adios_ver=${COMMITISH} --build-arg ubuntu_ver=18.04 -t ${IMAGENAME} scripts/docker/images/ubuntu ; then - exit 1; - fi - ;; - docker-ubuntu1910) - IMAGENAME=ornladios/adios2:ubuntu1910 - if ! docker build --build-arg adios_ver=${COMMITISH} --build-arg ubuntu_ver=19.10 -t ${IMAGENAME} scripts/docker/images/ubuntu ; then - exit 1; - fi - ;; - docker-centos7) - IMAGENAME=ornladios/adios2:centos7 - if ! docker build --build-arg adios_ver=${COMMITISH} -t ${IMAGENAME} scripts/docker/images/centos7 ; then - exit 1; - fi - ;; - docker-centos8) - IMAGENAME=ornladios/adios2:centos8 - if ! docker build --build-arg adios_ver=${COMMITISH} -t ${IMAGENAME} scripts/docker/images/centos8 ; then - exit 1; - fi - ;; - *) - echo "Error: BUILD_MATRIX_ENTRY is set to an unknown docker image" - exit 1; - ;; -esac - -if [[ -z "${TRAVIS_PULL_REQUEST_SHA}" && "${TRAVIS_BRANCH}" = "master" ]] -then - docker login --username="${DOCKERHUB_USERNAME}" --password="${DOCKERHUB_PASSWORD}" - docker push ${IMAGENAME} -fi - -exit 0 diff --git a/scripts/travis/run-format.sh b/scripts/travis/run-format.sh deleted file mode 100755 index 619664e482..0000000000 --- a/scripts/travis/run-format.sh +++ /dev/null @@ -1,47 +0,0 @@ -#!/usr/bin/env bash - -if [ -z "${SOURCE_DIR}" ] -then - echo "Error: SOURCE_DIR is empty or undefined" - exit 1 -fi -if [ -z "${COMMIT_RANGE}" ] -then - echo "Error: COMMIT_RANGE is empty or undefined" - exit 1 -fi - -# Install clang-format -pushd ${HOME} -wget http://releases.llvm.org/7.0.1/clang+llvm-7.0.1-x86_64-linux-gnu-ubuntu-16.04.tar.xz -tar -xf clang+llvm-7.0.1-x86_64-linux-gnu-ubuntu-16.04.tar.xz -export PATH="${PWD}/clang+llvm-7.0.1-x86_64-linux-gnu-ubuntu-16.04/bin:${PATH}" -git config --global clangformat.binary ${HOME}/clang+llvm-7.0.1-x86_64-linux-gnu-ubuntu-16.04/bin/clang-format -popd - -# Install flake8 -pip3 install --user flake8 - -cd ${SOURCE_DIR} - -# Check C and C++ code with clang-format -echo "Checking formatting for commit range: ${COMMIT_RANGE}" -DIFF="$(./scripts/developer/git/git-clang-format -x '^(thirdparty|cmake/upstream|bindings/Matlab)/' --diff ${COMMIT_RANGE})" -if [ -n "${DIFF}" ] && [ "${DIFF}" != "no modified files to format" ] -then - echo "clang-format:" - echo " Code format checks failed." - echo " Please run clang-format (or git clang-format) on your changes" - echo " before committing." - echo " The following changes are suggested:" - echo "${DIFF}" - exit 1 -fi - -# Check python code with flake8 -if ! ~/.local/bin/flake8 --config=flake8.cfg . -then - exit 3 -fi - -exit 0 diff --git a/scripts/travis/run.sh b/scripts/travis/run.sh deleted file mode 100755 index 47d5d1c8c7..0000000000 --- a/scripts/travis/run.sh +++ /dev/null @@ -1,32 +0,0 @@ -#!/usr/bin/env bash - -export SOURCE_DIR=${TRAVIS_BUILD_DIR} -export BUILD_DIR=$(readlink -f ${SOURCE_DIR}/..) -export COMMIT_RANGE="${TRAVIS_COMMIT_RANGE/.../ }" -if [ -n "${TRAVIS_PULL_REQUEST_BRANCH}" ] -then - export BUILD_LABEL="pr${TRAVIS_PULL_REQUEST}_${TRAVIS_PULL_REQUEST_BRANCH}_${TRAVIS_BUILD_NUMBER}" -else - export BUILD_LABEL="${TRAVIS_BRANCH}_${TRAVIS_BUILD_NUMBER}" -fi - - - -case ${BUILD_MATRIX_ENTRY} in - format) - echo "Running formatting tests" - if ! ${SOURCE_DIR}/scripts/travis/run-format.sh; then - exit 1; - fi - ;; - docker*) - echo "Building ${BUILD_MATRIX_ENTRY}" - if ! ${SOURCE_DIR}/scripts/travis/run-docker.sh; then - exit 1; - fi - ;; - *) - echo "Error: BUILD_MATRIX_ENTRY is undefined or set to an unknown value" - exit 1; - ;; -esac From 2e8c8b084f71d5b6411296a38d6af4fcd0229ecc Mon Sep 17 00:00:00 2001 From: Vicente Bolea Date: Tue, 18 Jul 2023 12:04:35 -0400 Subject: [PATCH 039/183] Update ReadMe.md --- ReadMe.md | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/ReadMe.md b/ReadMe.md index 695d50374d..4cc8e72b88 100644 --- a/ReadMe.md +++ b/ReadMe.md @@ -74,6 +74,14 @@ Once ADIOS2 is installed refer to: * Previous releases: [https://github.com/ornladios/ADIOS2/releases](https://github.com/ornladios/ADIOS2/releases) +## Community + +ADIOS2 is an open source project: Questions, discussion, and contributions are welcome. Join us at: + +- Slack workspace: [![Slack](https://img.shields.io/badge/slack-ADIOS2-pink.svg)](https://adios2.spack.io) +- Mailing list: adios-ecp@kitware.com +- Github Discussions: https://github.com/ornladios/ADIOS2/discussions + ## Reporting Bugs If you find a bug, please open an [issue on ADIOS2 github repository](https://github.com/ornladios/ADIOS2/issues) @@ -86,8 +94,8 @@ See the [Contributor's Guide to ADIOS 2](Contributing.md) for instructions on ho ADIOS2 is licensed under the Apache License v2.0. See the accompanying [Copyright.txt](Copyright.txt) for more details. - ## Directory layout + * bindings - public application programming interface, API, language bindings (C++11, C, Fortran, Python and Matlab) * cmake - Project specific CMake modules From dbc8be518425b45aacbb2b5abbabf35afe57a8a6 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Tue, 18 Jul 2023 16:32:15 -0400 Subject: [PATCH 040/183] cmake: moved logic to enable h5vol to detectoptions.cmake --- CMakeLists.txt | 1 + cmake/DetectOptions.cmake | 12 ++++++++++++ source/CMakeLists.txt | 12 ------------ 3 files changed, 13 insertions(+), 12 deletions(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index 93d76a790a..ad70e1817b 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -157,6 +157,7 @@ adios_option(SST "Enable support for SST" AUTO) adios_option(BP5 "Enable support for BP5" AUTO) adios_option(ZeroMQ "Enable support for ZeroMQ" AUTO) adios_option(HDF5 "Enable support for the HDF5 engine" AUTO) +adios_option(HDF5_VOL "Enable support for HDF5 ADIOS2 VOL" AUTO) adios_option(IME "Enable support for DDN IME transport" AUTO) adios_option(Python "Enable support for Python bindings" AUTO) adios_option(Fortran "Enable support for Fortran bindings" AUTO) diff --git a/cmake/DetectOptions.cmake b/cmake/DetectOptions.cmake index 509b221fd2..99d2d45cb1 100644 --- a/cmake/DetectOptions.cmake +++ b/cmake/DetectOptions.cmake @@ -318,6 +318,18 @@ elseif(ADIOS2_USE_HDF5) message(FATAL_ERROR "MPI is disabled but parallel HDF5 is detected.") endif() set(ADIOS2_HAVE_HDF5 TRUE) + + # HDF5 VOL requires 1.13+ + if(ADIOS2_USE_HDF5_VOL AND ADIOS2_HAVE_HDF5) + if(HDF5_VERSION GREATER_EQUAL 1.14) + set(ADIOS2_HAVE_HDF5_VOL TRUE) + else() + set(ADIOS2_HAVE_HDF5_VOL FALSE) + if(ADIOS2_USE_HDF5_VOL STREQUAL ON) + message(FATAL_ERROR "ADIOS HDF5_VOL requires HDF5>=1.14+") + endif() + endif() + endif() endif() # IME diff --git a/source/CMakeLists.txt b/source/CMakeLists.txt index a79c4d8527..46e5e3e6d8 100644 --- a/source/CMakeLists.txt +++ b/source/CMakeLists.txt @@ -6,18 +6,6 @@ add_subdirectory(adios2) add_subdirectory(utils) -# HDF5 VOL requires 1.13+ -if(ADIOS2_HAVE_HDF5) - if(HDF5_VERSION VERSION_LESS 1.14) - set(ADIOS2_HAVE_HDF5_VOL OFF CACHE INTERNAL "") - message(STATUS "[ADIOS2 WARNING] To enable ADIOS VOL for HDF5, please use the version 1.14+ ") - else() - set(ADIOS2_HAVE_HDF5_VOL ON CACHE INTERNAL "") - endif() -else() - set(ADIOS2_HAVE_HDF5_VOL OFF CACHE INTERNAL "") -endif() - if(ADIOS2_HAVE_HDF5_VOL) add_subdirectory(h5vol) endif() From 17591a6d3d96857499e29c814067dd80d0fe96d1 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 25 Jul 2023 21:19:54 +0000 Subject: [PATCH 041/183] build(deps): bump certifi from 2022.12.7 to 2023.7.22 in /docs Bumps [certifi](https://github.com/certifi/python-certifi) from 2022.12.7 to 2023.7.22. - [Commits](https://github.com/certifi/python-certifi/compare/2022.12.07...2023.07.22) --- updated-dependencies: - dependency-name: certifi dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- docs/requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/requirements.txt b/docs/requirements.txt index 37fb7a3da5..2e0e27f85a 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -3,7 +3,7 @@ Babel==2.11.0 blockdiag==3.0.0 breathe==4.33.0 brotlipy==0.7.0 -certifi==2022.12.7 +certifi==2023.7.22 cffi==1.15.1 charset-normalizer==2.1.1 colorama==0.4.6 From 1d0b9803f5a2869e42086ad3ee21f5124923accc Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Tue, 25 Jul 2023 18:24:36 -0400 Subject: [PATCH 042/183] cmake,readthedocs: update python enable instructions --- docs/user_guide/source/setting_up/source/cmake.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/user_guide/source/setting_up/source/cmake.rst b/docs/user_guide/source/setting_up/source/cmake.rst index 8b0e44e54d..131cb975b6 100644 --- a/docs/user_guide/source/setting_up/source/cmake.rst +++ b/docs/user_guide/source/setting_up/source/cmake.rst @@ -84,7 +84,7 @@ VAR VALUE Description ``ADIOS2_USE_MPI`` **ON**/OFF MPI or non-MPI (serial) build. ``ADIOS2_USE_ZeroMQ`` **ON**/OFF `ZeroMQ `_ for the DataMan engine. ``ADIOS2_USE_HDF5`` **ON**/OFF `HDF5 `_ engine. If HDF5 is not on the syspath, it can be set using ``-DHDF5_ROOT=/path/to/hdf5`` -``ADIOS2_USE_Python`` **ON**/OFF Python bindings. Python 3 will be used if found. If you want to specify a particular python version use ``-DPYTHON_EXECUTABLE=/path/to/interpreter/python`` +``ADIOS2_USE_Python`` **ON**/OFF Python bindings. Python 3 will be used if found. If you want to specify a particular python version use ``-DPYTHON_EXECUTABLE=/path/to/interpreter/python -DPython_FIND_STRATEGY=LOCATION`` ``ADIOS2_USE_Fortran`` **ON**/OFF Bindings for Fortran 90 or above. ``ADIOS2_USE_SST`` **ON**/OFF Simplified Staging Engine (SST) and its dependencies, requires MPI. Can optionally use LibFabric/UCX for RDMA transport. You can specify the LibFabric/UCX path manually with the -DLIBFABRIC_ROOT=... or -DUCX_ROOT=... option. ``ADIOS2_USE_BZip2`` **ON**/OFF `BZIP2 `_ compression. From 2a6b5bef1e22dad1f827a7ede99d08382f25d81a Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Fri, 28 Jul 2023 18:02:23 -0400 Subject: [PATCH 043/183] ci: increase windows timeout defsync and DataWrite --- scripts/ci/cmake/ci-win2019-vs2019-ompi.cmake | 1 + scripts/ci/cmake/ci-win2019-vs2019-serial.cmake | 1 + testing/adios2/engine/staging-common/CMakeLists.txt | 6 ++++++ 3 files changed, 8 insertions(+) diff --git a/scripts/ci/cmake/ci-win2019-vs2019-ompi.cmake b/scripts/ci/cmake/ci-win2019-vs2019-ompi.cmake index 42ee581bc7..0be2b74470 100644 --- a/scripts/ci/cmake/ci-win2019-vs2019-ompi.cmake +++ b/scripts/ci/cmake/ci-win2019-vs2019-ompi.cmake @@ -8,6 +8,7 @@ ADIOS2_USE_Fortran:BOOL=OFF ADIOS2_USE_MPI:BOOL=ON ") +set(CTEST_TEST_TIMEOUT 500) set(CTEST_CMAKE_GENERATOR "Visual Studio 16 2019") set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") diff --git a/scripts/ci/cmake/ci-win2019-vs2019-serial.cmake b/scripts/ci/cmake/ci-win2019-vs2019-serial.cmake index 71288aaec5..e7739ea37a 100644 --- a/scripts/ci/cmake/ci-win2019-vs2019-serial.cmake +++ b/scripts/ci/cmake/ci-win2019-vs2019-serial.cmake @@ -8,6 +8,7 @@ ADIOS2_USE_Fortran:BOOL=OFF ADIOS2_USE_MPI:BOOL=OFF ") +set(CTEST_TEST_TIMEOUT 500) set(CTEST_CMAKE_GENERATOR "Visual Studio 16 2019") set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") diff --git a/testing/adios2/engine/staging-common/CMakeLists.txt b/testing/adios2/engine/staging-common/CMakeLists.txt index 1ae9b8f7fc..9fdcea85c7 100644 --- a/testing/adios2/engine/staging-common/CMakeLists.txt +++ b/testing/adios2/engine/staging-common/CMakeLists.txt @@ -376,3 +376,9 @@ if(NOT MSVC AND ADIOS2_HAVE_HDF5 AND (NOT ADIOS2_HAVE_MPI OR HDF5_IS_PARALLEL)) add_common_test(${test} HDF5) endforeach() endif() + +# Tests particularities +if (WIN32) + set_property(TEST Staging.1x1DefSync.BP5 PROPERTY TIMEOUT 500) + set_property(TEST Staging.1x1DataWrite.BP5 PROPERTY TIMEOUT 500) +endif() From d158363c9ceaff96266e0738a24073799a25ba9d Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Fri, 28 Jul 2023 12:49:58 -0400 Subject: [PATCH 044/183] format,ci: update clang-format to clang16 --- .github/workflows/everything.yml | 2 +- scripts/ci/images/formatting/Dockerfile | 23 ++++++++++++----------- scripts/ci/scripts/run-clang-format.sh | 5 ++++- scripts/developer/run-clang-format.sh | 7 +++++++ 4 files changed, 24 insertions(+), 13 deletions(-) create mode 100755 scripts/developer/run-clang-format.sh diff --git a/.github/workflows/everything.yml b/.github/workflows/everything.yml index 222082c4ab..4d3cad21c8 100644 --- a/.github/workflows/everything.yml +++ b/.github/workflows/everything.yml @@ -66,7 +66,7 @@ jobs: runs-on: ubuntu-latest container: - image: ornladios/adios2:ci-formatting + image: ghcr.io/ornladios/adios2:ci-formatting steps: - uses: actions/checkout@v3 diff --git a/scripts/ci/images/formatting/Dockerfile b/scripts/ci/images/formatting/Dockerfile index 9ee5ef0b6c..13f85b6d5a 100644 --- a/scripts/ci/images/formatting/Dockerfile +++ b/scripts/ci/images/formatting/Dockerfile @@ -1,15 +1,16 @@ -FROM ubuntu:20.04 +FROM fedora:38 -RUN apt update && \ - DEBIAN_FRONTEND="noninteractive" apt upgrade -y --no-install-recommends && \ - DEBIAN_FRONTEND="noninteractive" apt install -y --no-install-recommends \ - apt-utils \ - ca-certificates \ - clang-format-7 \ +RUN dnf update -y && \ + dnf install -y \ + clang-tools-extra \ curl \ - flake8 \ git \ - libtinfo5 \ - shellcheck \ + python3-flake8 \ + ShellCheck \ && \ - apt-get clean + dnf clean all + +# Check that the target programs has been installed +RUN command -v clang-format > /dev/null && \ + command -v flake8 > /dev/null && \ + command -v shellcheck > /dev/null diff --git a/scripts/ci/scripts/run-clang-format.sh b/scripts/ci/scripts/run-clang-format.sh index 1a3ff5c513..c37ab4444d 100755 --- a/scripts/ci/scripts/run-clang-format.sh +++ b/scripts/ci/scripts/run-clang-format.sh @@ -18,10 +18,13 @@ if [ -n "${DIFF}" ] then echo "clang-format:" echo " Code format checks failed." - echo " Please run clang-format v7.1.0 on your changes before committing." + echo " Please run clang-format v16 your changes before committing:" + echo " You can use our CI image for this with: scripts/developer/run-clang-format.sh" echo " The following changes are suggested:" echo "${DIFF}" + echo "$(git diff --stat)" exit 1 fi + exit 0 diff --git a/scripts/developer/run-clang-format.sh b/scripts/developer/run-clang-format.sh new file mode 100755 index 0000000000..fa6c3a5ab2 --- /dev/null +++ b/scripts/developer/run-clang-format.sh @@ -0,0 +1,7 @@ +#!/bin/bash + +exec sudo docker run -itt --mount type=bind,source="$(pwd)",target=/root/adios2 \ + ghcr.io/ornladios/adios2:ci-formatting sh -c \ + "git config --global --add safe.directory /root/adios2 && + cd /root/adios2 && + ./scripts/ci/scripts/run-clang-format.sh" From cace08ab469e8ec5554ba08a022724f738069a7b Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Fri, 28 Jul 2023 12:57:02 -0400 Subject: [PATCH 045/183] format: apply new clang format style --- bindings/C/adios2/c/adios2_c_attribute.cpp | 5 +- bindings/C/adios2/c/adios2_c_io.cpp | 27 +++---- bindings/C/adios2/c/adios2_c_variable.cpp | 5 +- bindings/CXX11/adios2/cxx11/IO.cpp | 10 ++- bindings/Python/py11Query.h | 2 +- bindings/Python/py11glue.cpp | 43 +++++----- examples/heatTransfer/write/HeatTransfer.cpp | 7 +- examples/heatTransfer/write/IO_h5mixer.cpp | 6 +- examples/query/test.cpp | 2 +- source/adios2/core/Attribute.h | 4 +- source/adios2/core/Attribute.tcc | 4 +- source/adios2/core/AttributeBase.cpp | 4 +- source/adios2/core/AttributeBase.h | 4 +- source/adios2/core/Group.h | 8 +- source/adios2/core/IO.cpp | 4 +- source/adios2/core/IO.h | 12 +-- source/adios2/core/Variable.tcc | 15 ++-- source/adios2/engine/bp5/BP5Engine.cpp | 26 +++--- source/adios2/engine/bp5/BP5Engine.h | 23 +++--- source/adios2/engine/bp5/BP5Reader.cpp | 14 ++-- source/adios2/engine/bp5/BP5Writer.cpp | 21 +++-- source/adios2/engine/daos/DaosEngine.cpp | 22 +++-- source/adios2/engine/daos/DaosEngine.h | 23 +++--- source/adios2/engine/daos/DaosReader.cpp | 6 +- source/adios2/engine/daos/DaosWriter.cpp | 12 +-- source/adios2/helper/adiosRangeFilter.cpp | 2 +- source/adios2/helper/kokkos/adiosKokkos.cpp | 17 ++-- .../burstbuffer/FileDrainerSingleThread.cpp | 21 ++--- source/adios2/toolkit/format/bp/BPBase.cpp | 13 ++- source/adios2/toolkit/format/bp/BPBase.h | 9 +-- source/adios2/toolkit/format/bp/BPBase.tcc | 81 +++++++------------ .../adios2/toolkit/format/bp/BPSerializer.cpp | 16 ++-- .../adios2/toolkit/format/bp/BPSerializer.h | 4 +- .../adios2/toolkit/format/bp/BPSerializer.tcc | 38 +++------ .../adios2/toolkit/format/bp/bp3/BP3Base.cpp | 21 +++-- source/adios2/toolkit/format/bp/bp3/BP3Base.h | 17 ++-- .../toolkit/format/bp/bp3/BP3Deserializer.cpp | 9 +-- .../toolkit/format/bp/bp3/BP3Deserializer.tcc | 12 +-- .../adios2/toolkit/format/bp/bp4/BP4Base.cpp | 43 +++++----- source/adios2/toolkit/format/bp/bp4/BP4Base.h | 31 +++---- .../toolkit/format/bp/bp4/BP4Deserializer.cpp | 9 +-- .../toolkit/format/bp/bp4/BP4Deserializer.tcc | 15 ++-- .../toolkit/format/bp/bp4/BP4Serializer.cpp | 6 +- .../compress/BPBackCompatBlosc.h | 4 +- .../toolkit/format/bp5/BP5Deserializer.cpp | 14 ++-- .../toolkit/format/bp5/BP5Serializer.cpp | 5 +- .../adios2/toolkit/format/bp5/BP5Serializer.h | 4 +- source/adios2/toolkit/query/BlockIndex.cpp | 2 +- source/adios2/toolkit/query/Query.h | 2 +- source/adios2/toolkit/sst/cp/cp_internal.h | 38 ++++----- source/adios2/toolkit/sst/cp/cp_writer.c | 9 +-- source/adios2/toolkit/sst/cp/ffs_marshal.c | 4 +- source/adios2/toolkit/sst/cp/ffs_marshal.h | 6 +- source/adios2/toolkit/sst/dp/daos_dp.c | 22 ++--- source/adios2/toolkit/sst/dp/dp.c | 2 +- source/adios2/toolkit/sst/dp/dummy_dp.c | 20 ++--- source/adios2/toolkit/sst/dp/evpath_dp.c | 26 +++--- source/adios2/toolkit/sst/dp/mpi_dp.c | 18 ++--- source/adios2/toolkit/sst/dp/rdma_dp.c | 26 +++--- source/adios2/toolkit/sst/dp/ucx_dp.c | 18 ++--- source/adios2/toolkit/sst/sst_data.h | 2 +- .../toolkit/transport/file/FileAWSSDK.cpp | 3 +- .../toolkit/transport/file/FileDaos.cpp | 2 +- source/h5vol/H5VolError.h | 2 +- source/h5vol/H5Vol_attr.c | 21 ++--- source/h5vol/H5Vol_dataset.c | 9 +-- source/h5vol/H5Vol_group.c | 3 +- source/h5vol/H5Vol_link.c | 9 +-- source/h5vol/H5Vol_object.c | 6 +- source/utils/adios_iotest/adios_iotest.cpp | 12 +-- source/utils/adios_iotest/processConfig.cpp | 12 +-- source/utils/adios_iotest/stream.cpp | 6 +- source/utils/adios_reorganize/Reorganize.cpp | 4 +- source/utils/adios_reorganize/Reorganize.h | 4 +- source/utils/bpls/bpls.cpp | 3 +- .../adios2/performance/query/TestBPQuery.cpp | 2 +- testing/h5vol/TestH5VolWriteReadBPFile.cpp | 2 +- 77 files changed, 437 insertions(+), 558 deletions(-) diff --git a/bindings/C/adios2/c/adios2_c_attribute.cpp b/bindings/C/adios2/c/adios2_c_attribute.cpp index 98da6c6da1..eb7a9867c3 100644 --- a/bindings/C/adios2/c/adios2_c_attribute.cpp +++ b/bindings/C/adios2/c/adios2_c_attribute.cpp @@ -60,7 +60,10 @@ adios2_error adios2_attribute_type(adios2_type *type, } ADIOS2_FOREACH_C_ATTRIBUTE_TYPE_1ARG(make_case) #undef make_case - else { *type = adios2_type_unknown; } + else + { + *type = adios2_type_unknown; + } return adios2_error_none; } catch (...) diff --git a/bindings/C/adios2/c/adios2_c_io.cpp b/bindings/C/adios2/c/adios2_c_io.cpp index 839f6a3a86..89c66bc363 100644 --- a/bindings/C/adios2/c/adios2_c_io.cpp +++ b/bindings/C/adios2/c/adios2_c_io.cpp @@ -205,23 +205,20 @@ adios2_define_variable(adios2_io *io, const char *name, const adios2_type type, switch (type) { - case (adios2_type_string): - { + case (adios2_type_string): { variableCpp = &ioCpp.DefineVariable( name, shapeV, startV, countV, constantSizeBool); break; } #define make_case(adios2_type) \ - case (adios2_type): \ - { \ + case (adios2_type): { \ variableCpp = &ioCpp.DefineVariable::Type>( \ name, shapeV, startV, countV, constantSizeBool); \ break; \ } ADIOS2_FOREACH_C_TYPE_1ARG(make_case) #undef make_case - default: - { + default: { throw std::invalid_argument("ERROR: unsupported type " + std::to_string(static_cast(type)) + ", see enum adios2_type for acceptable " @@ -507,8 +504,7 @@ adios2_attribute *adios2_define_variable_attribute( switch (type) { - case (adios2_type_string): - { + case (adios2_type_string): { // relying on null terminated character for the size const std::string singleString( reinterpret_cast(value)); @@ -517,8 +513,7 @@ adios2_attribute *adios2_define_variable_attribute( break; } #define make_case(adios2_type) \ - case (adios2_type): \ - { \ + case (adios2_type): { \ attributeCpp = &ioCpp.DefineAttribute( \ name, \ *reinterpret_cast::Type *>( \ @@ -528,8 +523,7 @@ adios2_attribute *adios2_define_variable_attribute( } ADIOS2_FOREACH_C_ATTRIBUTE_TYPE_1ARG(make_case) #undef make_case - default: - { + default: { throw std::invalid_argument("ERROR: unsupported type " + std::to_string(static_cast(type)) + ", see enum adios2_type for acceptable " @@ -576,8 +570,7 @@ adios2_attribute *adios2_define_variable_attribute_array( switch (type) { - case (adios2_type_string): - { + case (adios2_type_string): { const char **char2D = reinterpret_cast(const_cast(data)); @@ -589,8 +582,7 @@ adios2_attribute *adios2_define_variable_attribute_array( break; } #define make_case(adios2_type) \ - case (adios2_type): \ - { \ + case (adios2_type): { \ attributeCpp = &ioCpp.DefineAttribute( \ name, \ reinterpret_cast::Type *>(data), \ @@ -599,8 +591,7 @@ adios2_attribute *adios2_define_variable_attribute_array( } ADIOS2_FOREACH_C_ATTRIBUTE_TYPE_1ARG(make_case) #undef make_case - default: - { + default: { throw std::invalid_argument( "ERROR: unsupported type " + std::to_string(static_cast(type)) + diff --git a/bindings/C/adios2/c/adios2_c_variable.cpp b/bindings/C/adios2/c/adios2_c_variable.cpp index 55d9b387ee..df0ac4cd9f 100644 --- a/bindings/C/adios2/c/adios2_c_variable.cpp +++ b/bindings/C/adios2/c/adios2_c_variable.cpp @@ -231,7 +231,10 @@ adios2_error adios2_variable_type(adios2_type *type, } ADIOS2_FOREACH_C_TYPE_1ARG(make_case) #undef make_case - else { *type = adios2_type_unknown; } + else + { + *type = adios2_type_unknown; + } return adios2_error_none; } catch (...) diff --git a/bindings/CXX11/adios2/cxx11/IO.cpp b/bindings/CXX11/adios2/cxx11/IO.cpp index e1eee598b6..ebd6c5e850 100644 --- a/bindings/CXX11/adios2/cxx11/IO.cpp +++ b/bindings/CXX11/adios2/cxx11/IO.cpp @@ -179,7 +179,10 @@ VariableNT IO::DefineVariable(const DataType type, const std::string &name, } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type - else { return nullptr; } + else + { + return nullptr; + } } StructDefinition IO::DefineStruct(const std::string &name, const size_t size) @@ -217,7 +220,10 @@ VariableNT IO::InquireVariable(const std::string &name) { return VariableNT(m_IO->InquireStructVariable(name)); } - else { return nullptr; } + else + { + return nullptr; + } } VariableNT IO::InquireStructVariable(const std::string &name) diff --git a/bindings/Python/py11Query.h b/bindings/Python/py11Query.h index 68147e17f2..df04fd3e59 100644 --- a/bindings/Python/py11Query.h +++ b/bindings/Python/py11Query.h @@ -13,7 +13,7 @@ #include -//#include "adios2/toolkit/query/Query.h" +// #include "adios2/toolkit/query/Query.h" #include "adios2/toolkit/query/Worker.h" #include "py11Engine.h" diff --git a/bindings/Python/py11glue.cpp b/bindings/Python/py11glue.cpp index 60a7cf39af..0fc65fb9dd 100644 --- a/bindings/Python/py11glue.cpp +++ b/bindings/Python/py11glue.cpp @@ -456,15 +456,15 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) pybind11::return_value_policy::move) .def("Put", - (void (adios2::py11::Engine::*)(adios2::py11::Variable, - const pybind11::array &, - const adios2::Mode launch)) & + (void(adios2::py11::Engine::*)(adios2::py11::Variable, + const pybind11::array &, + const adios2::Mode launch)) & adios2::py11::Engine::Put, pybind11::arg("variable"), pybind11::arg("array"), pybind11::arg("launch") = adios2::Mode::Deferred) - .def("Put", (void (adios2::py11::Engine::*)(adios2::py11::Variable, - const std::string &)) & + .def("Put", (void(adios2::py11::Engine::*)(adios2::py11::Variable, + const std::string &)) & adios2::py11::Engine::Put) .def("PerformPuts", &adios2::py11::Engine::PerformPuts) @@ -472,9 +472,9 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) .def("PerformDataWrite", &adios2::py11::Engine::PerformDataWrite) .def("Get", - (void (adios2::py11::Engine::*)(adios2::py11::Variable, - pybind11::array &, - const adios2::Mode launch)) & + (void(adios2::py11::Engine::*)(adios2::py11::Variable, + pybind11::array &, + const adios2::Mode launch)) & adios2::py11::Engine::Get, pybind11::arg("variable"), pybind11::arg("array"), pybind11::arg("launch") = adios2::Mode::Deferred) @@ -540,8 +540,9 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) [](const adios2::py11::File &stream) { return stream; }) .def("__exit__", [](adios2::py11::File &stream, pybind11::args) { stream.Close(); }) - .def("__iter__", [](adios2::py11::File &stream) { return stream; }, - pybind11::keep_alive<0, 1>()) + .def( + "__iter__", [](adios2::py11::File &stream) { return stream; }, + pybind11::keep_alive<0, 1>()) .def("__next__", [](adios2::py11::File &stream) { if (!stream.GetStep()) @@ -630,7 +631,7 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("write", - (void (adios2::py11::File::*)( + (void(adios2::py11::File::*)( const std::string &, const pybind11::array &, const adios2::Dims &, const adios2::Dims &, const adios2::Dims &, const bool)) & @@ -667,7 +668,7 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("write", - (void (adios2::py11::File::*)( + (void(adios2::py11::File::*)( const std::string &, const pybind11::array &, const adios2::Dims &, const adios2::Dims &, const adios2::Dims &, const adios2::vParams &, const bool)) & @@ -704,9 +705,9 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("write", - (void (adios2::py11::File::*)(const std::string &, - const pybind11::array &, const bool, - const bool)) & + (void(adios2::py11::File::*)(const std::string &, + const pybind11::array &, const bool, + const bool)) & adios2::py11::File::Write, pybind11::arg("name"), pybind11::arg("array"), pybind11::arg("local_value") = false, @@ -729,9 +730,9 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("write", - (void (adios2::py11::File::*)(const std::string &, - const std::string &, const bool, - const bool)) & + (void(adios2::py11::File::*)(const std::string &, + const std::string &, const bool, + const bool)) & adios2::py11::File::Write, pybind11::arg("name"), pybind11::arg("string"), pybind11::arg("local_value") = false, @@ -754,7 +755,7 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("write_attribute", - (void (adios2::py11::File::*)( + (void(adios2::py11::File::*)( const std::string &, const pybind11::array &, const std::string &, const std::string, const bool)) & adios2::py11::File::WriteAttribute, @@ -785,7 +786,7 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("write_attribute", - (void (adios2::py11::File::*)( + (void(adios2::py11::File::*)( const std::string &, const std::string &, const std::string &, const std::string, const bool)) & adios2::py11::File::WriteAttribute, @@ -816,7 +817,7 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("write_attribute", - (void (adios2::py11::File::*)( + (void(adios2::py11::File::*)( const std::string &, const std::vector &, const std::string &, const std::string, const bool)) & adios2::py11::File::WriteAttribute, diff --git a/examples/heatTransfer/write/HeatTransfer.cpp b/examples/heatTransfer/write/HeatTransfer.cpp index 56e4b90ec6..d9b2d29b19 100644 --- a/examples/heatTransfer/write/HeatTransfer.cpp +++ b/examples/heatTransfer/write/HeatTransfer.cpp @@ -202,14 +202,15 @@ void HeatTransfer::exchange(MPI_Comm comm) // std::cout << "Rank " << m_s.rank << " send up to rank " << // m_s.rank_up // << std::endl; - MPI_Send(m_TCurrent[1], m_s.ndy + 2, MPI_DOUBLE, m_s.rank_up, tag, comm); + MPI_Send(m_TCurrent[1], m_s.ndy + 2, MPI_DOUBLE, m_s.rank_up, tag, + comm); } if (m_s.rank_down >= 0) { // std::cout << "Rank " << m_s.rank << " receive from below from rank " // << m_s.rank_down << std::endl; - MPI_Recv(m_TCurrent[m_s.ndx + 1], m_s.ndy + 2, MPI_DOUBLE, m_s.rank_down, - tag, comm, &status); + MPI_Recv(m_TCurrent[m_s.ndx + 1], m_s.ndy + 2, MPI_DOUBLE, + m_s.rank_down, tag, comm, &status); } } diff --git a/examples/heatTransfer/write/IO_h5mixer.cpp b/examples/heatTransfer/write/IO_h5mixer.cpp index 697ea568c4..e559da687e 100644 --- a/examples/heatTransfer/write/IO_h5mixer.cpp +++ b/examples/heatTransfer/write/IO_h5mixer.cpp @@ -16,9 +16,9 @@ #define str_helper(X) #X #define str(X) str_helper(X) -//#ifndef DEFAULT_CONFIG -//#define DEFAULT_CONFIG config.xml -//#endif +// #ifndef DEFAULT_CONFIG +// #define DEFAULT_CONFIG config.xml +// #endif #define DEFAULT_CONFIG mix.xml #define DEFAULT_CONFIG_STR str(DEFAULT_CONFIG) diff --git a/examples/query/test.cpp b/examples/query/test.cpp index 49bb4bd139..9b40d57b3d 100644 --- a/examples/query/test.cpp +++ b/examples/query/test.cpp @@ -10,7 +10,7 @@ #include #include -//#include "adios2/toolkit/query/Worker.h" +// #include "adios2/toolkit/query/Worker.h" int main(int argc, char *argv[]) { diff --git a/source/adios2/core/Attribute.h b/source/adios2/core/Attribute.h index edf26dd7c2..5775fb1218 100644 --- a/source/adios2/core/Attribute.h +++ b/source/adios2/core/Attribute.h @@ -67,8 +67,8 @@ class Attribute : public AttributeBase private: std::string DoGetInfoValue() const noexcept override; - bool DoEqual(const void *values, const size_t elements) const - noexcept override; + bool DoEqual(const void *values, + const size_t elements) const noexcept override; }; } // end namespace core diff --git a/source/adios2/core/Attribute.tcc b/source/adios2/core/Attribute.tcc index ab08f90b45..1520b81ec6 100644 --- a/source/adios2/core/Attribute.tcc +++ b/source/adios2/core/Attribute.tcc @@ -146,8 +146,8 @@ std::string Attribute::DoGetInfoValue() const noexcept } template -bool Attribute::DoEqual(const void *values, const size_t elements) const - noexcept +bool Attribute::DoEqual(const void *values, + const size_t elements) const noexcept { if (m_Elements != elements) { diff --git a/source/adios2/core/AttributeBase.cpp b/source/adios2/core/AttributeBase.cpp index 4f3ad4dc7d..b6b74cedc4 100644 --- a/source/adios2/core/AttributeBase.cpp +++ b/source/adios2/core/AttributeBase.cpp @@ -40,8 +40,8 @@ Params AttributeBase::GetInfo() const noexcept return info; } -bool AttributeBase::Equals(const void *values, const size_t elements) const - noexcept +bool AttributeBase::Equals(const void *values, + const size_t elements) const noexcept { return this->DoEqual(values, elements); } diff --git a/source/adios2/core/AttributeBase.h b/source/adios2/core/AttributeBase.h index f424de8a2c..fd65681b4c 100644 --- a/source/adios2/core/AttributeBase.h +++ b/source/adios2/core/AttributeBase.h @@ -62,8 +62,8 @@ class AttributeBase private: virtual std::string DoGetInfoValue() const noexcept = 0; - virtual bool DoEqual(const void *values, const size_t elements) const - noexcept = 0; + virtual bool DoEqual(const void *values, + const size_t elements) const noexcept = 0; }; } // end namespace core diff --git a/source/adios2/core/Group.h b/source/adios2/core/Group.h index 5bcb41191a..c15207797f 100644 --- a/source/adios2/core/Group.h +++ b/source/adios2/core/Group.h @@ -141,10 +141,10 @@ class Group * @param name input attribute name * @return type if found returns type as string, otherwise an empty string */ - DataType InquireAttributeType(const std::string &name, - const std::string &variableName = "", - const std::string separator = "/") const - noexcept; + DataType + InquireAttributeType(const std::string &name, + const std::string &variableName = "", + const std::string separator = "/") const noexcept; }; } // end namespace core diff --git a/source/adios2/core/IO.cpp b/source/adios2/core/IO.cpp index 47d7cd0f88..acb28e645b 100644 --- a/source/adios2/core/IO.cpp +++ b/source/adios2/core/IO.cpp @@ -464,8 +464,8 @@ DataType IO::InquireVariableType(const std::string &name) const noexcept return InquireVariableType(itVariable); } -DataType IO::InquireVariableType(const VarMap::const_iterator itVariable) const - noexcept +DataType +IO::InquireVariableType(const VarMap::const_iterator itVariable) const noexcept { if (itVariable == m_Variables.end()) { diff --git a/source/adios2/core/IO.h b/source/adios2/core/IO.h index 8a0acac023..f344b8fb4c 100644 --- a/source/adios2/core/IO.h +++ b/source/adios2/core/IO.h @@ -300,8 +300,8 @@ class IO * @param itVariable * @return type primitive type */ - DataType InquireVariableType(const VarMap::const_iterator itVariable) const - noexcept; + DataType + InquireVariableType(const VarMap::const_iterator itVariable) const noexcept; /** * Retrieves hash holding internal variable identifiers @@ -339,10 +339,10 @@ class IO * @param name input attribute name * @return type if found returns type as string, otherwise an empty string */ - DataType InquireAttributeType(const std::string &name, - const std::string &variableName = "", - const std::string separator = "/") const - noexcept; + DataType + InquireAttributeType(const std::string &name, + const std::string &variableName = "", + const std::string separator = "/") const noexcept; /** * @brief Retrieve map with attributes info. Use when reading. diff --git a/source/adios2/core/Variable.tcc b/source/adios2/core/Variable.tcc index 884a00afe6..18fb9d59f7 100644 --- a/source/adios2/core/Variable.tcc +++ b/source/adios2/core/Variable.tcc @@ -113,12 +113,15 @@ std::pair Variable::DoMinMax(const size_t step) const MinMaxStruct MM; if (m_Engine->VariableMinMax(*this, step, MM)) { - if (std::is_same::value) { - return minMax; - } else { - minMax.first = *(T *)&MM.MinUnion; - minMax.second = *(T *)&MM.MaxUnion; - return minMax; + if (std::is_same::value) + { + return minMax; + } + else + { + minMax.first = *(T *)&MM.MinUnion; + minMax.second = *(T *)&MM.MaxUnion; + return minMax; } } } diff --git a/source/adios2/engine/bp5/BP5Engine.cpp b/source/adios2/engine/bp5/BP5Engine.cpp index 0ef8619142..faaa7eedb6 100644 --- a/source/adios2/engine/bp5/BP5Engine.cpp +++ b/source/adios2/engine/bp5/BP5Engine.cpp @@ -23,9 +23,8 @@ namespace core namespace engine { -std::vector -BP5Engine::GetBPMetadataFileNames(const std::vector &names) const - noexcept +std::vector BP5Engine::GetBPMetadataFileNames( + const std::vector &names) const noexcept { std::vector metadataFileNames; metadataFileNames.reserve(names.size()); @@ -48,8 +47,8 @@ std::vector BP5Engine::GetBPMetaMetadataFileNames( return metaMetadataFileNames; } -std::string BP5Engine::GetBPMetadataFileName(const std::string &name) const - noexcept +std::string +BP5Engine::GetBPMetadataFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); const size_t index = 0; // global metadata file is generated by rank 0 @@ -59,8 +58,8 @@ std::string BP5Engine::GetBPMetadataFileName(const std::string &name) const return bpMetaDataRankName; } -std::string BP5Engine::GetBPMetaMetadataFileName(const std::string &name) const - noexcept +std::string +BP5Engine::GetBPMetaMetadataFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); const size_t index = 0; // global metadata file is generated by rank 0 @@ -82,8 +81,8 @@ std::vector BP5Engine::GetBPMetadataIndexFileNames( return metadataIndexFileNames; } -std::string BP5Engine::GetBPMetadataIndexFileName(const std::string &name) const - noexcept +std::string +BP5Engine::GetBPMetadataIndexFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); /* the name of the metadata index file is "md.idx" */ @@ -92,9 +91,8 @@ std::string BP5Engine::GetBPMetadataIndexFileName(const std::string &name) const return bpMetaDataIndexRankName; } -std::vector -BP5Engine::GetBPVersionFileNames(const std::vector &names) const - noexcept +std::vector BP5Engine::GetBPVersionFileNames( + const std::vector &names) const noexcept { std::vector versionFileNames; versionFileNames.reserve(names.size()); @@ -105,8 +103,8 @@ BP5Engine::GetBPVersionFileNames(const std::vector &names) const return versionFileNames; } -std::string BP5Engine::GetBPVersionFileName(const std::string &name) const - noexcept +std::string +BP5Engine::GetBPVersionFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); /* the name of the version file is ".bpversion" */ diff --git a/source/adios2/engine/bp5/BP5Engine.h b/source/adios2/engine/bp5/BP5Engine.h index d7b4bc8e92..4ca223d240 100644 --- a/source/adios2/engine/bp5/BP5Engine.h +++ b/source/adios2/engine/bp5/BP5Engine.h @@ -79,21 +79,18 @@ class BP5Engine GetBPSubStreamNames(const std::vector &names, size_t subFileIndex) const noexcept; - std::vector - GetBPMetadataFileNames(const std::vector &names) const - noexcept; - std::vector - GetBPMetaMetadataFileNames(const std::vector &names) const - noexcept; + std::vector GetBPMetadataFileNames( + const std::vector &names) const noexcept; + std::vector GetBPMetaMetadataFileNames( + const std::vector &names) const noexcept; std::string GetBPMetadataFileName(const std::string &name) const noexcept; - std::string GetBPMetaMetadataFileName(const std::string &name) const - noexcept; - std::vector - GetBPMetadataIndexFileNames(const std::vector &names) const - noexcept; + std::string + GetBPMetaMetadataFileName(const std::string &name) const noexcept; + std::vector GetBPMetadataIndexFileNames( + const std::vector &names) const noexcept; - std::string GetBPMetadataIndexFileName(const std::string &name) const - noexcept; + std::string + GetBPMetadataIndexFileName(const std::string &name) const noexcept; std::string GetBPSubStreamName(const std::string &name, const size_t id, const bool hasSubFiles = true, diff --git a/source/adios2/engine/bp5/BP5Reader.cpp b/source/adios2/engine/bp5/BP5Reader.cpp index 21322000c2..63cd4301fd 100644 --- a/source/adios2/engine/bp5/BP5Reader.cpp +++ b/source/adios2/engine/bp5/BP5Reader.cpp @@ -368,8 +368,8 @@ void BP5Reader::PerformGets() // then main thread process the last subset for (size_t tid = 0; tid < nThreads - 1; ++tid) { - futures[tid] = std::async(std::launch::async, lf_Reader, (int)(tid + 1), - maxOpenFiles); + futures[tid] = std::async(std::launch::async, lf_Reader, + (int)(tid + 1), maxOpenFiles); } // main thread runs last subset of reads /*auto tMain = */ lf_Reader(0, maxOpenFiles); @@ -502,9 +502,9 @@ void BP5Reader::InitParameters() } size_t limit = helper::RaiseLimitNoFile(); - if (m_Parameters.MaxOpenFilesAtOnce > (unsigned int) limit - 8) + if (m_Parameters.MaxOpenFilesAtOnce > (unsigned int)limit - 8) { - m_Parameters.MaxOpenFilesAtOnce = (unsigned int) limit - 8; + m_Parameters.MaxOpenFilesAtOnce = (unsigned int)limit - 8; } } @@ -971,8 +971,7 @@ size_t BP5Reader::ParseMetadataIndex(format::BufferSTL &bufferSTL, switch (recordID) { - case IndexRecord::WriterMapRecord: - { + case IndexRecord::WriterMapRecord: { auto p = m_WriterMap.emplace(m_StepsCount, WriterMapStruct()); auto &s = p.first->second; s.WriterCount = (uint32_t)helper::ReadValue( @@ -993,8 +992,7 @@ size_t BP5Reader::ParseMetadataIndex(format::BufferSTL &bufferSTL, m_LastWriterCount = s.WriterCount; break; } - case IndexRecord::StepRecord: - { + case IndexRecord::StepRecord: { std::vector ptrs; const uint64_t MetadataPos = helper::ReadValue( buffer, position, m_Minifooter.IsLittleEndian); diff --git a/source/adios2/engine/bp5/BP5Writer.cpp b/source/adios2/engine/bp5/BP5Writer.cpp index 32cb7e8bda..9ba081537f 100644 --- a/source/adios2/engine/bp5/BP5Writer.cpp +++ b/source/adios2/engine/bp5/BP5Writer.cpp @@ -858,8 +858,7 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) switch (recordID) { - case IndexRecord::WriterMapRecord: - { + case IndexRecord::WriterMapRecord: { m_AppendWriterCount = (uint32_t)helper::ReadValue( buffer, position, IsLittleEndian); m_AppendAggregatorCount = (uint32_t)helper::ReadValue( @@ -874,8 +873,7 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) position += m_AppendWriterCount * sizeof(uint64_t); break; } - case IndexRecord::StepRecord: - { + case IndexRecord::StepRecord: { position += 2 * sizeof(uint64_t); // MetadataPos, MetadataSize const uint64_t FlushCount = helper::ReadValue(buffer, position, IsLittleEndian); @@ -945,8 +943,7 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) switch (recordID) { - case IndexRecord::WriterMapRecord: - { + case IndexRecord::WriterMapRecord: { m_AppendWriterCount = (uint32_t)helper::ReadValue( buffer, position, IsLittleEndian); m_AppendAggregatorCount = (uint32_t)helper::ReadValue( @@ -964,8 +961,7 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) } break; } - case IndexRecord::StepRecord: - { + case IndexRecord::StepRecord: { m_AppendMetadataIndexPos = position - sizeof(unsigned char) - sizeof(uint64_t); // pos of RecordID const uint64_t MetadataPos = @@ -1563,10 +1559,11 @@ void BP5Writer::FlushData(const bool isFinal) void BP5Writer::Flush(const int transportIndex) {} -void BP5Writer::PerformDataWrite() { - m_Profiler.Start("PDW"); - FlushData(false); - m_Profiler.Stop("PDW"); +void BP5Writer::PerformDataWrite() +{ + m_Profiler.Start("PDW"); + FlushData(false); + m_Profiler.Stop("PDW"); } void BP5Writer::DestructorClose(bool Verbose) noexcept diff --git a/source/adios2/engine/daos/DaosEngine.cpp b/source/adios2/engine/daos/DaosEngine.cpp index 5b0dd0d37d..af71d1205b 100644 --- a/source/adios2/engine/daos/DaosEngine.cpp +++ b/source/adios2/engine/daos/DaosEngine.cpp @@ -23,9 +23,8 @@ namespace core namespace engine { -std::vector -DaosEngine::GetBPMetadataFileNames(const std::vector &names) const - noexcept +std::vector DaosEngine::GetBPMetadataFileNames( + const std::vector &names) const noexcept { std::vector metadataFileNames; metadataFileNames.reserve(names.size()); @@ -48,8 +47,8 @@ std::vector DaosEngine::GetBPMetaMetadataFileNames( return metaMetadataFileNames; } -std::string DaosEngine::GetBPMetadataFileName(const std::string &name) const - noexcept +std::string +DaosEngine::GetBPMetadataFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); const size_t index = 0; // global metadata file is generated by rank 0 @@ -59,8 +58,8 @@ std::string DaosEngine::GetBPMetadataFileName(const std::string &name) const return bpMetaDataRankName; } -std::string DaosEngine::GetBPMetaMetadataFileName(const std::string &name) const - noexcept +std::string +DaosEngine::GetBPMetaMetadataFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); const size_t index = 0; // global metadata file is generated by rank 0 @@ -92,9 +91,8 @@ DaosEngine::GetBPMetadataIndexFileName(const std::string &name) const noexcept return bpMetaDataIndexRankName; } -std::vector -DaosEngine::GetBPVersionFileNames(const std::vector &names) const - noexcept +std::vector DaosEngine::GetBPVersionFileNames( + const std::vector &names) const noexcept { std::vector versionFileNames; versionFileNames.reserve(names.size()); @@ -105,8 +103,8 @@ DaosEngine::GetBPVersionFileNames(const std::vector &names) const return versionFileNames; } -std::string DaosEngine::GetBPVersionFileName(const std::string &name) const - noexcept +std::string +DaosEngine::GetBPVersionFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); /* the name of the version file is ".bpversion" */ diff --git a/source/adios2/engine/daos/DaosEngine.h b/source/adios2/engine/daos/DaosEngine.h index b4801fab1a..ffe9bd0bcb 100644 --- a/source/adios2/engine/daos/DaosEngine.h +++ b/source/adios2/engine/daos/DaosEngine.h @@ -72,21 +72,18 @@ class DaosEngine GetBPSubStreamNames(const std::vector &names, size_t subFileIndex) const noexcept; - std::vector - GetBPMetadataFileNames(const std::vector &names) const - noexcept; - std::vector - GetBPMetaMetadataFileNames(const std::vector &names) const - noexcept; + std::vector GetBPMetadataFileNames( + const std::vector &names) const noexcept; + std::vector GetBPMetaMetadataFileNames( + const std::vector &names) const noexcept; std::string GetBPMetadataFileName(const std::string &name) const noexcept; - std::string GetBPMetaMetadataFileName(const std::string &name) const - noexcept; - std::vector - GetBPMetadataIndexFileNames(const std::vector &names) const - noexcept; + std::string + GetBPMetaMetadataFileName(const std::string &name) const noexcept; + std::vector GetBPMetadataIndexFileNames( + const std::vector &names) const noexcept; - std::string GetBPMetadataIndexFileName(const std::string &name) const - noexcept; + std::string + GetBPMetadataIndexFileName(const std::string &name) const noexcept; std::string GetBPSubStreamName(const std::string &name, const size_t id, const bool hasSubFiles = true, diff --git a/source/adios2/engine/daos/DaosReader.cpp b/source/adios2/engine/daos/DaosReader.cpp index f0bc8af734..a182f87d51 100644 --- a/source/adios2/engine/daos/DaosReader.cpp +++ b/source/adios2/engine/daos/DaosReader.cpp @@ -1083,8 +1083,7 @@ size_t DaosReader::ParseMetadataIndex(format::BufferSTL &bufferSTL, switch (recordID) { - case IndexRecord::WriterMapRecord: - { + case IndexRecord::WriterMapRecord: { auto p = m_WriterMap.emplace(m_StepsCount, WriterMapStruct()); auto &s = p.first->second; s.WriterCount = helper::ReadValue( @@ -1105,8 +1104,7 @@ size_t DaosReader::ParseMetadataIndex(format::BufferSTL &bufferSTL, m_LastWriterCount = s.WriterCount; break; } - case IndexRecord::StepRecord: - { + case IndexRecord::StepRecord: { std::vector ptrs; const uint64_t MetadataPos = helper::ReadValue( buffer, position, m_Minifooter.IsLittleEndian); diff --git a/source/adios2/engine/daos/DaosWriter.cpp b/source/adios2/engine/daos/DaosWriter.cpp index 7adb0a169c..e3e8f82abf 100644 --- a/source/adios2/engine/daos/DaosWriter.cpp +++ b/source/adios2/engine/daos/DaosWriter.cpp @@ -876,8 +876,7 @@ uint64_t DaosWriter::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) switch (recordID) { - case IndexRecord::WriterMapRecord: - { + case IndexRecord::WriterMapRecord: { m_AppendWriterCount = helper::ReadValue(buffer, position, IsLittleEndian); m_AppendAggregatorCount = @@ -892,8 +891,7 @@ uint64_t DaosWriter::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) position += m_AppendWriterCount * sizeof(uint64_t); break; } - case IndexRecord::StepRecord: - { + case IndexRecord::StepRecord: { position += 2 * sizeof(uint64_t); // MetadataPos, MetadataSize const uint64_t FlushCount = helper::ReadValue(buffer, position, IsLittleEndian); @@ -963,8 +961,7 @@ uint64_t DaosWriter::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) switch (recordID) { - case IndexRecord::WriterMapRecord: - { + case IndexRecord::WriterMapRecord: { m_AppendWriterCount = helper::ReadValue(buffer, position, IsLittleEndian); m_AppendAggregatorCount = @@ -982,8 +979,7 @@ uint64_t DaosWriter::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) } break; } - case IndexRecord::StepRecord: - { + case IndexRecord::StepRecord: { m_AppendMetadataIndexPos = position - sizeof(unsigned char) - sizeof(uint64_t); // pos of RecordID const uint64_t MetadataPos = diff --git a/source/adios2/helper/adiosRangeFilter.cpp b/source/adios2/helper/adiosRangeFilter.cpp index 3a3dfebbad..2cf89f3e43 100644 --- a/source/adios2/helper/adiosRangeFilter.cpp +++ b/source/adios2/helper/adiosRangeFilter.cpp @@ -12,7 +12,7 @@ #include "adiosLog.h" /// \cond EXCLUDE_FROM_DOXYGEN -//#include +// #include #include #include #include // std::invalid_argument diff --git a/source/adios2/helper/kokkos/adiosKokkos.cpp b/source/adios2/helper/kokkos/adiosKokkos.cpp index dffc18e29e..bd7415f43a 100644 --- a/source/adios2/helper/kokkos/adiosKokkos.cpp +++ b/source/adios2/helper/kokkos/adiosKokkos.cpp @@ -28,14 +28,15 @@ void KokkosDeepCopy(const char *src, char *dst, size_t byteCount) template void KokkosMinMaxImpl(const T *data, const size_t size, T &min, T &max) { - Kokkos::parallel_reduce(size, - KOKKOS_LAMBDA(int i, T &lmax, T &lmin) { - if (lmax < data[i]) - lmax = data[i]; - if (lmin > data[i]) - lmin = data[i]; - }, - Kokkos::Max(max), Kokkos::Min(min)); + Kokkos::parallel_reduce( + size, + KOKKOS_LAMBDA(int i, T &lmax, T &lmin) { + if (lmax < data[i]) + lmax = data[i]; + if (lmin > data[i]) + lmin = data[i]; + }, + Kokkos::Max(max), Kokkos::Min(min)); } // types non supported on the device diff --git a/source/adios2/toolkit/burstbuffer/FileDrainerSingleThread.cpp b/source/adios2/toolkit/burstbuffer/FileDrainerSingleThread.cpp index 3c35211dcb..8c95f90229 100644 --- a/source/adios2/toolkit/burstbuffer/FileDrainerSingleThread.cpp +++ b/source/adios2/toolkit/burstbuffer/FileDrainerSingleThread.cpp @@ -156,8 +156,7 @@ void FileDrainerSingleThread::DrainThread() { case DrainOperation::CopyAt: - case DrainOperation::Copy: - { + case DrainOperation::Copy: { ts = core::Now(); auto fdr = GetFileForRead(fdo.fromFileName); te = core::Now(); @@ -224,8 +223,7 @@ void FileDrainerSingleThread::DrainThread() } break; } - case DrainOperation::SeekEnd: - { + case DrainOperation::SeekEnd: { if (m_Verbose >= 2) { #ifndef NO_SANITIZE_THREAD @@ -240,8 +238,7 @@ void FileDrainerSingleThread::DrainThread() timeWrite += te - ts; break; } - case DrainOperation::WriteAt: - { + case DrainOperation::WriteAt: { if (m_Verbose >= 2) { #ifndef NO_SANITIZE_THREAD @@ -262,8 +259,7 @@ void FileDrainerSingleThread::DrainThread() nWriteBytesSucc += n; break; } - case DrainOperation::Write: - { + case DrainOperation::Write: { if (m_Verbose >= 2) { #ifndef NO_SANITIZE_THREAD @@ -283,8 +279,7 @@ void FileDrainerSingleThread::DrainThread() nWriteBytesSucc += n; break; } - case DrainOperation::Create: - { + case DrainOperation::Create: { if (m_Verbose >= 2) { #ifndef NO_SANITIZE_THREAD @@ -298,8 +293,7 @@ void FileDrainerSingleThread::DrainThread() timeWrite += te - ts; break; } - case DrainOperation::Open: - { + case DrainOperation::Open: { if (m_Verbose >= 2) { #ifndef NO_SANITIZE_THREAD @@ -313,8 +307,7 @@ void FileDrainerSingleThread::DrainThread() timeWrite += te - ts; break; } - case DrainOperation::Delete: - { + case DrainOperation::Delete: { if (m_Verbose >= 2) { #ifndef NO_SANITIZE_THREAD diff --git a/source/adios2/toolkit/format/bp/BPBase.cpp b/source/adios2/toolkit/format/bp/BPBase.cpp index cde687b3af..86ae5e3ba2 100644 --- a/source/adios2/toolkit/format/bp/BPBase.cpp +++ b/source/adios2/toolkit/format/bp/BPBase.cpp @@ -354,9 +354,8 @@ void BPBase::DeleteBuffers() } // PROTECTED -std::vector -BPBase::GetTransportIDs(const std::vector &transportsTypes) const - noexcept +std::vector BPBase::GetTransportIDs( + const std::vector &transportsTypes) const noexcept { auto lf_GetTransportID = [](const std::string method) -> uint8_t { int id = METHOD_UNKNOWN; @@ -395,10 +394,10 @@ BPBase::GetTransportIDs(const std::vector &transportsTypes) const return transportsIDs; } -size_t BPBase::GetProcessGroupIndexSize(const std::string name, - const std::string timeStepName, - const size_t transportsSize) const - noexcept +size_t +BPBase::GetProcessGroupIndexSize(const std::string name, + const std::string timeStepName, + const size_t transportsSize) const noexcept { // pgIndex + list of methods (transports) const size_t pgSize = diff --git a/source/adios2/toolkit/format/bp/BPBase.h b/source/adios2/toolkit/format/bp/BPBase.h index 28a7e06b2c..1c1f7ad4f8 100644 --- a/source/adios2/toolkit/format/bp/BPBase.h +++ b/source/adios2/toolkit/format/bp/BPBase.h @@ -474,8 +474,8 @@ class BPBase * @param transformType input * @return corresponding enum TransformTypes */ - TransformTypes TransformTypeEnum(const std::string transformType) const - noexcept; + TransformTypes + TransformTypeEnum(const std::string transformType) const noexcept; /** * Returns the proper derived class for BPOperation based on type @@ -567,9 +567,8 @@ class BPBase * @param transportsTypes input user transports * @return vector with enum IO_METHOD */ - std::vector - GetTransportIDs(const std::vector &transportsTypes) const - noexcept; + std::vector GetTransportIDs( + const std::vector &transportsTypes) const noexcept; /** * Calculates the Process Index size in bytes according to the BP diff --git a/source/adios2/toolkit/format/bp/BPBase.tcc b/source/adios2/toolkit/format/bp/BPBase.tcc index 5978f42d0c..9820cbdf1a 100644 --- a/source/adios2/toolkit/format/bp/BPBase.tcc +++ b/source/adios2/toolkit/format/bp/BPBase.tcc @@ -60,23 +60,20 @@ inline void BPBase::ParseCharacteristics( switch (id) { - case (characteristic_time_index): - { + case (characteristic_time_index): { characteristics.Statistics.Step = helper::ReadValue(buffer, position, isLittleEndian); foundTimeStep = true; break; } - case (characteristic_file_index): - { + case (characteristic_file_index): { characteristics.Statistics.FileIndex = helper::ReadValue(buffer, position, isLittleEndian); break; } - case (characteristic_value): - { + case (characteristic_value): { if (dataType == type_string) { // first get the length of the string @@ -111,22 +108,19 @@ inline void BPBase::ParseCharacteristics( break; } - case (characteristic_offset): - { + case (characteristic_offset): { characteristics.Statistics.Offset = helper::ReadValue(buffer, position, isLittleEndian); break; } - case (characteristic_payload_offset): - { + case (characteristic_payload_offset): { characteristics.Statistics.PayloadOffset = helper::ReadValue(buffer, position, isLittleEndian); break; } - case (characteristic_dimensions): - { + case (characteristic_dimensions): { auto lf_CheckEmpty = [](const Dims &dimensions) -> bool { return std::all_of( dimensions.begin(), dimensions.end(), @@ -172,8 +166,7 @@ inline void BPBase::ParseCharacteristics( break; } - default: - { + default: { helper::Throw( "Toolkit", "format::bp::BPBase", "ParseCharacteristics", "characteristic ID " + std::to_string(id) + " not supported"); @@ -213,23 +206,20 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, switch (id) { - case (characteristic_time_index): - { + case (characteristic_time_index): { characteristics.Statistics.Step = helper::ReadValue(buffer, position, isLittleEndian); foundTimeStep = true; break; } - case (characteristic_file_index): - { + case (characteristic_file_index): { characteristics.Statistics.FileIndex = helper::ReadValue(buffer, position, isLittleEndian); break; } - case (characteristic_value): - { + case (characteristic_value): { // we are relying that count contains the dimensions if (characteristics.Count.empty() || characteristics.Count[0] == 1) { @@ -273,22 +263,19 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, break; } - case (characteristic_min): - { + case (characteristic_min): { characteristics.Statistics.Min = helper::ReadValue(buffer, position, isLittleEndian); break; } - case (characteristic_max): - { + case (characteristic_max): { characteristics.Statistics.Max = helper::ReadValue(buffer, position, isLittleEndian); break; } - case (characteristic_minmax): - { + case (characteristic_minmax): { // first get the number of subblocks const uint16_t subBlocks = helper::ReadValue(buffer, position); @@ -323,22 +310,19 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, break; } - case (characteristic_offset): - { + case (characteristic_offset): { characteristics.Statistics.Offset = helper::ReadValue(buffer, position, isLittleEndian); break; } - case (characteristic_payload_offset): - { + case (characteristic_payload_offset): { characteristics.Statistics.PayloadOffset = helper::ReadValue(buffer, position, isLittleEndian); break; } - case (characteristic_dimensions): - { + case (characteristic_dimensions): { auto lf_CheckEmpty = [](const Dims &dimensions) -> bool { return std::all_of( dimensions.begin(), dimensions.end(), @@ -426,15 +410,13 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, break; } - case (characteristic_bitmap): - { + case (characteristic_bitmap): { characteristics.Statistics.Bitmap = std::bitset<32>( helper::ReadValue(buffer, position, isLittleEndian)); break; } - case (characteristic_stat): - { + case (characteristic_stat): { if (characteristics.Statistics.Bitmap.none()) { break; @@ -452,48 +434,41 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, switch (bitStat) { - case (statistic_min): - { + case (statistic_min): { characteristics.Statistics.Min = helper::ReadValue(buffer, position, isLittleEndian); break; } - case (statistic_max): - { + case (statistic_max): { characteristics.Statistics.Max = helper::ReadValue(buffer, position, isLittleEndian); break; } - case (statistic_sum): - { + case (statistic_sum): { characteristics.Statistics.BitSum = helper::ReadValue(buffer, position, isLittleEndian); break; } - case (statistic_sum_square): - { + case (statistic_sum_square): { characteristics.Statistics.BitSumSquare = helper::ReadValue(buffer, position, isLittleEndian); break; } - case (statistic_finite): - { + case (statistic_finite): { characteristics.Statistics.BitFinite = helper::ReadValue(buffer, position, isLittleEndian); break; } - case (statistic_hist): - { + case (statistic_hist): { helper::Throw( "Toolkit", "format::bp::BPBase", "ParseCharacteristics", "ADIOS2 default engine doesn't support " "histogram statistics"); } - case (statistic_cnt): - { + case (statistic_cnt): { characteristics.Statistics.BitCount = helper::ReadValue(buffer, position, isLittleEndian); @@ -504,8 +479,7 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, break; } - case (characteristic_transform_type): - { + case (characteristic_transform_type): { const size_t typeLength = static_cast( helper::ReadValue(buffer, position, isLittleEndian)); characteristics.Statistics.Op.Type = @@ -550,8 +524,7 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, break; } - default: - { + default: { helper::Throw( "Toolkit", "format::bp::BPBase", "ParseCharacteristics", "characteristic ID " + std::to_string(id) + " not supported"); diff --git a/source/adios2/toolkit/format/bp/BPSerializer.cpp b/source/adios2/toolkit/format/bp/BPSerializer.cpp index 7e06171dba..6be97f597d 100644 --- a/source/adios2/toolkit/format/bp/BPSerializer.cpp +++ b/source/adios2/toolkit/format/bp/BPSerializer.cpp @@ -12,8 +12,8 @@ #include "BPSerializer.tcc" #ifdef _WIN32 -#pragma warning( \ - disable : 4503) // Windows complains about MergeSerializeIndex long types +#pragma warning(disable : 4503) // Windows complains about MergeSerializeIndex + // long types #endif namespace adios2 @@ -332,16 +332,14 @@ void BPSerializer::UpdateOffsetsInMetadata() switch (dataTypeEnum) { - case (type_string): - { + case (type_string): { // do nothing, strings are obtained from metadata currentPosition = buffer.size(); break; } #define make_case(T) \ - case (TypeTraits::type_enum): \ - { \ + case (TypeTraits::type_enum): { \ UpdateIndexOffsetsCharacteristics( \ currentPosition, TypeTraits::type_enum, buffer); \ break; \ @@ -396,8 +394,7 @@ void BPSerializer::MergeSerializeIndices( { #define make_case(T) \ - case (TypeTraits::type_enum): \ - { \ + case (TypeTraits::type_enum): { \ size_t irrelevant; \ const auto characteristics = ReadElementIndexCharacteristics( \ buffer, position, TypeTraits::type_enum, irrelevant, true, \ @@ -410,8 +407,7 @@ void BPSerializer::MergeSerializeIndices( ADIOS2_FOREACH_STDTYPE_1ARG(make_case) #undef make_case - case (type_string_array): - { + case (type_string_array): { size_t irrelevant; const auto characteristics = ReadElementIndexCharacteristics( diff --git a/source/adios2/toolkit/format/bp/BPSerializer.h b/source/adios2/toolkit/format/bp/BPSerializer.h index ec3f181bdb..eacbf6649b 100644 --- a/source/adios2/toolkit/format/bp/BPSerializer.h +++ b/source/adios2/toolkit/format/bp/BPSerializer.h @@ -120,8 +120,8 @@ class BPSerializer : virtual public BPBase size_t GetAttributesSizeInData(core::IO &io) const noexcept; template - size_t GetAttributeSizeInData(const core::Attribute &attribute) const - noexcept; + size_t + GetAttributeSizeInData(const core::Attribute &attribute) const noexcept; void PutAttributes(core::IO &io); diff --git a/source/adios2/toolkit/format/bp/BPSerializer.tcc b/source/adios2/toolkit/format/bp/BPSerializer.tcc index ff4f6f9eb3..63bfb3ad55 100644 --- a/source/adios2/toolkit/format/bp/BPSerializer.tcc +++ b/source/adios2/toolkit/format/bp/BPSerializer.tcc @@ -129,20 +129,17 @@ void BPSerializer::UpdateIndexOffsetsCharacteristics(size_t ¤tPosition, switch (id) { - case (characteristic_time_index): - { + case (characteristic_time_index): { currentPosition += sizeof(uint32_t); break; } - case (characteristic_file_index): - { + case (characteristic_file_index): { currentPosition += sizeof(uint32_t); break; } - case (characteristic_value): - { + case (characteristic_value): { if (dataType == type_string) { // first get the length of the string @@ -162,18 +159,15 @@ void BPSerializer::UpdateIndexOffsetsCharacteristics(size_t ¤tPosition, break; } - case (characteristic_min): - { + case (characteristic_min): { currentPosition += sizeof(T); break; } - case (characteristic_max): - { + case (characteristic_max): { currentPosition += sizeof(T); break; } - case (characteristic_minmax): - { + case (characteristic_minmax): { // first get the number of subblocks const uint16_t M = helper::ReadValue(buffer, currentPosition); @@ -187,8 +181,7 @@ void BPSerializer::UpdateIndexOffsetsCharacteristics(size_t ¤tPosition, } break; } - case (characteristic_offset): - { + case (characteristic_offset): { const uint64_t currentOffset = helper::ReadValue( buffer, currentPosition, isLittleEndian); @@ -200,8 +193,7 @@ void BPSerializer::UpdateIndexOffsetsCharacteristics(size_t ¤tPosition, helper::CopyToBuffer(buffer, currentPosition, &updatedOffset); break; } - case (characteristic_payload_offset): - { + case (characteristic_payload_offset): { const uint64_t currentPayloadOffset = helper::ReadValue( buffer, currentPosition, isLittleEndian); @@ -214,8 +206,7 @@ void BPSerializer::UpdateIndexOffsetsCharacteristics(size_t ¤tPosition, &updatedPayloadOffset); break; } - case (characteristic_dimensions): - { + case (characteristic_dimensions): { dimensionsSize = static_cast(helper::ReadValue( buffer, currentPosition, isLittleEndian)); @@ -223,8 +214,7 @@ void BPSerializer::UpdateIndexOffsetsCharacteristics(size_t ¤tPosition, 3 * sizeof(uint64_t) * dimensionsSize + 2; // 2 is for length break; } - case (characteristic_transform_type): - { + case (characteristic_transform_type): { const size_t typeLength = static_cast(helper::ReadValue( buffer, currentPosition, isLittleEndian)); @@ -247,8 +237,7 @@ void BPSerializer::UpdateIndexOffsetsCharacteristics(size_t ¤tPosition, break; } - default: - { + default: { helper::Throw( "Toolkit", "format::bp::BPSerializer", "UpdateIndexOffsetsCharacteristics", @@ -261,9 +250,8 @@ void BPSerializer::UpdateIndexOffsetsCharacteristics(size_t ¤tPosition, } template -inline size_t -BPSerializer::GetAttributeSizeInData(const core::Attribute &attribute) const - noexcept +inline size_t BPSerializer::GetAttributeSizeInData( + const core::Attribute &attribute) const noexcept { size_t size = 14 + attribute.m_Name.size() + 10; size += 4 + sizeof(T) * attribute.m_Elements; diff --git a/source/adios2/toolkit/format/bp/bp3/BP3Base.cpp b/source/adios2/toolkit/format/bp/bp3/BP3Base.cpp index 34bd029f09..8d7547c395 100644 --- a/source/adios2/toolkit/format/bp/bp3/BP3Base.cpp +++ b/source/adios2/toolkit/format/bp/bp3/BP3Base.cpp @@ -37,9 +37,8 @@ BP3Base::GetBPBaseNames(const std::vector &names) const noexcept return bpBaseNames; } -std::vector -BP3Base::GetBPMetadataFileNames(const std::vector &names) const - noexcept +std::vector BP3Base::GetBPMetadataFileNames( + const std::vector &names) const noexcept { std::vector metadataFileNames; metadataFileNames.reserve(names.size()); @@ -50,15 +49,14 @@ BP3Base::GetBPMetadataFileNames(const std::vector &names) const return metadataFileNames; } -std::string BP3Base::GetBPMetadataFileName(const std::string &name) const - noexcept +std::string +BP3Base::GetBPMetadataFileName(const std::string &name) const noexcept { return helper::AddExtension(name, ".bp"); } -std::vector -BP3Base::GetBPSubStreamNames(const std::vector &names) const - noexcept +std::vector BP3Base::GetBPSubStreamNames( + const std::vector &names) const noexcept { std::vector bpNames; bpNames.reserve(names.size()); @@ -159,9 +157,10 @@ std::string BP3Base::GetBPSubStreamName(const std::string &name, bpRoot = bpName.substr(lastPathSeparator); } - const size_t index = - isReader ? id - : m_Aggregator.m_IsActive ? m_Aggregator.m_SubStreamIndex : id; + const size_t index = isReader ? id + : m_Aggregator.m_IsActive + ? m_Aggregator.m_SubStreamIndex + : id; const std::string bpRankName(bpName + ".dir" + PathSeparator + bpRoot + "." + std::to_string(index)); diff --git a/source/adios2/toolkit/format/bp/bp3/BP3Base.h b/source/adios2/toolkit/format/bp/bp3/BP3Base.h index b3fd0fb767..ce2d004cff 100644 --- a/source/adios2/toolkit/format/bp/bp3/BP3Base.h +++ b/source/adios2/toolkit/format/bp/bp3/BP3Base.h @@ -69,13 +69,11 @@ class BP3Base : virtual public BPBase * @param baseNames inputs * @return vector of BP substream names for transports */ - std::vector - GetBPSubStreamNames(const std::vector &baseNames) const - noexcept; + std::vector GetBPSubStreamNames( + const std::vector &baseNames) const noexcept; - std::vector - GetBPMetadataFileNames(const std::vector &names) const - noexcept; + std::vector GetBPMetadataFileNames( + const std::vector &names) const noexcept; std::string GetBPMetadataFileName(const std::string &name) const noexcept; @@ -94,10 +92,9 @@ class BP3Base : virtual public BPBase const Dims &count) const noexcept; protected: - ElementIndexHeader - ReadElementIndexHeader(const std::vector &buffer, size_t &position, - const bool isLittleEndian = true) const - noexcept final; + ElementIndexHeader ReadElementIndexHeader( + const std::vector &buffer, size_t &position, + const bool isLittleEndian = true) const noexcept final; private: std::string GetBPSubStreamName(const std::string &name, const size_t id, diff --git a/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.cpp b/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.cpp index d0603ae2bb..ab43ceac6a 100644 --- a/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.cpp +++ b/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.cpp @@ -217,8 +217,7 @@ void BP3Deserializer::ParseVariablesIndex(const BufferSTL &bufferSTL, { #define make_case(T) \ - case (TypeTraits::type_enum): \ - { \ + case (TypeTraits::type_enum): { \ DefineVariableInEngineIO(header, engine, buffer, position); \ break; \ } @@ -317,15 +316,13 @@ void BP3Deserializer::ParseAttributesIndex(const BufferSTL &bufferSTL, { #define make_case(T) \ - case (TypeTraits::type_enum): \ - { \ + case (TypeTraits::type_enum): { \ DefineAttributeInEngineIO(header, engine, buffer, position); \ break; \ } ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(make_case) #undef make_case - case (type_string_array): - { + case (type_string_array): { DefineAttributeInEngineIO(header, engine, buffer, position); break; diff --git a/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.tcc b/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.tcc index afbda7c8c8..cbcdf16a81 100644 --- a/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.tcc +++ b/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.tcc @@ -884,13 +884,11 @@ void BP3Deserializer::DefineVariableInEngineIO(const ElementIndexHeader &header, std::lock_guard lock(m_Mutex); switch (characteristics.EntryShapeID) { - case (ShapeID::GlobalValue): - { + case (ShapeID::GlobalValue): { variable = &engine.m_IO.DefineVariable(variableName); break; } - case (ShapeID::GlobalArray): - { + case (ShapeID::GlobalArray): { const Dims shape = m_ReverseDimensions ? Dims(characteristics.Shape.rbegin(), characteristics.Shape.rend()) @@ -902,15 +900,13 @@ void BP3Deserializer::DefineVariableInEngineIO(const ElementIndexHeader &header, variable->m_Shape; break; } - case (ShapeID::LocalValue): - { + case (ShapeID::LocalValue): { variable = &engine.m_IO.DefineVariable(variableName, {1}, {0}, {1}); variable->m_ShapeID = ShapeID::LocalValue; break; } - case (ShapeID::LocalArray): - { + case (ShapeID::LocalArray): { const Dims count = m_ReverseDimensions ? Dims(characteristics.Count.rbegin(), characteristics.Count.rend()) diff --git a/source/adios2/toolkit/format/bp/bp4/BP4Base.cpp b/source/adios2/toolkit/format/bp/bp4/BP4Base.cpp index 2a35e807ea..d2bad4a489 100644 --- a/source/adios2/toolkit/format/bp/bp4/BP4Base.cpp +++ b/source/adios2/toolkit/format/bp/bp4/BP4Base.cpp @@ -37,9 +37,8 @@ BP4Base::GetBPBaseNames(const std::vector &names) const noexcept return bpBaseNames; } -std::vector -BP4Base::GetBPMetadataFileNames(const std::vector &names) const - noexcept +std::vector BP4Base::GetBPMetadataFileNames( + const std::vector &names) const noexcept { std::vector metadataFileNames; metadataFileNames.reserve(names.size()); @@ -50,8 +49,8 @@ BP4Base::GetBPMetadataFileNames(const std::vector &names) const return metadataFileNames; } -std::string BP4Base::GetBPMetadataFileName(const std::string &name) const - noexcept +std::string +BP4Base::GetBPMetadataFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); const size_t index = 0; // global metadata file is generated by rank 0 @@ -73,8 +72,8 @@ std::vector BP4Base::GetBPMetadataIndexFileNames( return metadataIndexFileNames; } -std::string BP4Base::GetBPMetadataIndexFileName(const std::string &name) const - noexcept +std::string +BP4Base::GetBPMetadataIndexFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); /* the name of the metadata index file is "md.idx" */ @@ -83,9 +82,8 @@ std::string BP4Base::GetBPMetadataIndexFileName(const std::string &name) const return bpMetaDataIndexRankName; } -std::vector -BP4Base::GetBPVersionFileNames(const std::vector &names) const - noexcept +std::vector BP4Base::GetBPVersionFileNames( + const std::vector &names) const noexcept { std::vector versionFileNames; versionFileNames.reserve(names.size()); @@ -96,8 +94,8 @@ BP4Base::GetBPVersionFileNames(const std::vector &names) const return versionFileNames; } -std::string BP4Base::GetBPVersionFileName(const std::string &name) const - noexcept +std::string +BP4Base::GetBPVersionFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); /* the name of the version file is ".bpversion" */ @@ -105,9 +103,8 @@ std::string BP4Base::GetBPVersionFileName(const std::string &name) const return bpVersionFileName; } -std::vector -BP4Base::GetBPActiveFlagFileNames(const std::vector &names) const - noexcept +std::vector BP4Base::GetBPActiveFlagFileNames( + const std::vector &names) const noexcept { std::vector metadataIndexFileNames; metadataIndexFileNames.reserve(names.size()); @@ -118,8 +115,8 @@ BP4Base::GetBPActiveFlagFileNames(const std::vector &names) const return metadataIndexFileNames; } -std::string BP4Base::GetBPActiveFlagFileName(const std::string &name) const - noexcept +std::string +BP4Base::GetBPActiveFlagFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); /* the name of the metadata index file is "md.idx" */ @@ -128,9 +125,8 @@ std::string BP4Base::GetBPActiveFlagFileName(const std::string &name) const return bpMetaDataIndexRankName; } -std::vector -BP4Base::GetBPSubStreamNames(const std::vector &names) const - noexcept +std::vector BP4Base::GetBPSubStreamNames( + const std::vector &names) const noexcept { std::vector bpNames; bpNames.reserve(names.size()); @@ -231,9 +227,10 @@ std::string BP4Base::GetBPSubStreamName(const std::string &name, const std::string bpName = helper::RemoveTrailingSlash(name); - const size_t index = - isReader ? id - : m_Aggregator.m_IsActive ? m_Aggregator.m_SubStreamIndex : id; + const size_t index = isReader ? id + : m_Aggregator.m_IsActive + ? m_Aggregator.m_SubStreamIndex + : id; /* the name of a data file starts with "data." */ const std::string bpRankName(bpName + PathSeparator + "data." + diff --git a/source/adios2/toolkit/format/bp/bp4/BP4Base.h b/source/adios2/toolkit/format/bp/bp4/BP4Base.h index 239f9de9d9..c71613c772 100644 --- a/source/adios2/toolkit/format/bp/bp4/BP4Base.h +++ b/source/adios2/toolkit/format/bp/bp4/BP4Base.h @@ -88,31 +88,27 @@ class BP4Base : virtual public BPBase * @param baseNames inputs * @return vector of BP substream names for transports */ - std::vector - GetBPSubStreamNames(const std::vector &baseNames) const - noexcept; + std::vector GetBPSubStreamNames( + const std::vector &baseNames) const noexcept; - std::vector - GetBPMetadataFileNames(const std::vector &names) const - noexcept; + std::vector GetBPMetadataFileNames( + const std::vector &names) const noexcept; std::string GetBPMetadataFileName(const std::string &name) const noexcept; - std::vector - GetBPMetadataIndexFileNames(const std::vector &names) const - noexcept; + std::vector GetBPMetadataIndexFileNames( + const std::vector &names) const noexcept; - std::string GetBPMetadataIndexFileName(const std::string &name) const - noexcept; + std::string + GetBPMetadataIndexFileName(const std::string &name) const noexcept; std::vector GetBPVersionFileNames(const std::vector &names) const noexcept; std::string GetBPVersionFileName(const std::string &name) const noexcept; - std::vector - GetBPActiveFlagFileNames(const std::vector &names) const - noexcept; + std::vector GetBPActiveFlagFileNames( + const std::vector &names) const noexcept; std::string GetBPActiveFlagFileName(const std::string &name) const noexcept; @@ -141,10 +137,9 @@ class BP4Base : virtual public BPBase */ size_t m_LastVarLengthPosInBuffer = 0; - ElementIndexHeader - ReadElementIndexHeader(const std::vector &buffer, size_t &position, - const bool isLittleEndian = true) const - noexcept final; + ElementIndexHeader ReadElementIndexHeader( + const std::vector &buffer, size_t &position, + const bool isLittleEndian = true) const noexcept final; private: std::string GetBPSubStreamName(const std::string &name, const size_t id, diff --git a/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.cpp b/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.cpp index 485bd95959..28ad30715f 100644 --- a/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.cpp +++ b/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.cpp @@ -343,8 +343,7 @@ void BP4Deserializer::ParseVariablesIndexPerStep(const BufferSTL &bufferSTL, { #define make_case(T) \ - case (TypeTraits::type_enum): \ - { \ + case (TypeTraits::type_enum): { \ DefineVariableInEngineIOPerStep(header, engine, buffer, position, \ step); \ break; \ @@ -530,15 +529,13 @@ void BP4Deserializer::ParseAttributesIndexPerStep(const BufferSTL &bufferSTL, { #define make_case(T) \ - case (TypeTraits::type_enum): \ - { \ + case (TypeTraits::type_enum): { \ DefineAttributeInEngineIO(header, engine, buffer, position); \ break; \ } ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(make_case) #undef make_case - case (type_string_array): - { + case (type_string_array): { DefineAttributeInEngineIO(header, engine, buffer, position); break; diff --git a/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.tcc b/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.tcc index a9fcca30f0..3cb55713c8 100644 --- a/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.tcc +++ b/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.tcc @@ -1053,13 +1053,11 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( std::lock_guard lock(m_Mutex); switch (characteristics.EntryShapeID) { - case (ShapeID::GlobalValue): - { + case (ShapeID::GlobalValue): { variable = &engine.m_IO.DefineVariable(variableName); break; } - case (ShapeID::GlobalArray): - { + case (ShapeID::GlobalArray): { const Dims shape = m_ReverseDimensions ? Dims(characteristics.Shape.rbegin(), characteristics.Shape.rend()) @@ -1071,8 +1069,7 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( variable->m_Shape; break; } - case (ShapeID::JoinedArray): - { + case (ShapeID::JoinedArray): { Dims shape = m_ReverseDimensions ? Dims(characteristics.Shape.rbegin(), characteristics.Shape.rend()) @@ -1098,15 +1095,13 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( variable->m_JoinedDimPos = joinedDimPos; break; } - case (ShapeID::LocalValue): - { + case (ShapeID::LocalValue): { variable = &engine.m_IO.DefineVariable(variableName, {1}, {0}, {1}); variable->m_ShapeID = ShapeID::LocalValue; break; } - case (ShapeID::LocalArray): - { + case (ShapeID::LocalArray): { const Dims count = m_ReverseDimensions ? Dims(characteristics.Count.rbegin(), characteristics.Count.rend()) diff --git a/source/adios2/toolkit/format/bp/bp4/BP4Serializer.cpp b/source/adios2/toolkit/format/bp/bp4/BP4Serializer.cpp index d87c426177..f21f4315a8 100644 --- a/source/adios2/toolkit/format/bp/bp4/BP4Serializer.cpp +++ b/source/adios2/toolkit/format/bp/bp4/BP4Serializer.cpp @@ -707,8 +707,7 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, { #define make_case(T) \ - case (TypeTraits::type_enum): \ - { \ + case (TypeTraits::type_enum): { \ size_t irrelevant; \ const auto characteristics = ReadElementIndexCharacteristics( \ buffer, position, TypeTraits::type_enum, irrelevant, true, \ @@ -721,8 +720,7 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, ADIOS2_FOREACH_STDTYPE_1ARG(make_case) #undef make_case - case (type_string_array): - { + case (type_string_array): { size_t irrelevant; const auto characteristics = ReadElementIndexCharacteristics( diff --git a/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.h b/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.h index eb773a1f74..7b7a5899f4 100644 --- a/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.h +++ b/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.h @@ -33,8 +33,8 @@ class BPBackCompatBlosc : public BPBackCompatOperation ~BPBackCompatBlosc() = default; - void GetMetadata(const std::vector &buffer, Params &info) const - noexcept final; + void GetMetadata(const std::vector &buffer, + Params &info) const noexcept final; void GetData(const char *input, const helper::BlockOperationInfo &blockOperationInfo, diff --git a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp index aed65d039f..c8c848f04f 100644 --- a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp +++ b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp @@ -58,7 +58,8 @@ void BP5Deserializer::InstallMetaMetaData(MetaMetaInfoBlock &MM) memcpy(FormatID, MM.MetaMetaID, MM.MetaMetaIDLen); memcpy(MetaMetaInfo, MM.MetaMetaInfo, MM.MetaMetaInfoLen); load_external_format_FMcontext(FMContext_from_FFS(ReaderFFSContext), - FormatID, (int) MM.MetaMetaIDLen, MetaMetaInfo); + FormatID, (int)MM.MetaMetaIDLen, + MetaMetaInfo); free(FormatID); } @@ -881,10 +882,11 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, if (!VarRec->Variable) { - VarRec->Variable = ArrayVarSetup( - m_Engine, VarRec->VarName, VarRec->Type, - (int)meta_base->Dims, meta_base->Shape, meta_base->Offsets, - meta_base->Count, VarRec->Def, VarRec->ReaderDef); + VarRec->Variable = + ArrayVarSetup(m_Engine, VarRec->VarName, VarRec->Type, + (int)meta_base->Dims, meta_base->Shape, + meta_base->Offsets, meta_base->Count, + VarRec->Def, VarRec->ReaderDef); static_cast(VarRec->Variable)->m_Engine = m_Engine; VarByKey[VarRec->Variable] = VarRec; @@ -1820,7 +1822,7 @@ void BP5Deserializer::FinalizeGet(const ReadRequest &Read, const bool freeAddr) { SelOffset = ZeroSel.data(); } - for (int i = 0; i < (int) DimCount; i++) + for (int i = 0; i < (int)DimCount; i++) { GlobalDimensions[i] = RankSize[i]; } diff --git a/source/adios2/toolkit/format/bp5/BP5Serializer.cpp b/source/adios2/toolkit/format/bp5/BP5Serializer.cpp index dbe595093e..d5ce49b81c 100644 --- a/source/adios2/toolkit/format/bp5/BP5Serializer.cpp +++ b/source/adios2/toolkit/format/bp5/BP5Serializer.cpp @@ -124,7 +124,7 @@ void BP5Serializer::RecalcAttributeStorageSize() Info.AttributeData = realloc(Info.AttributeData, NewAttributeSize + 8); memset((char *)(Info.AttributeData) + Info.AttributeSize, 0, NewAttributeSize - Info.AttributeSize); - Info.AttributeSize = (int) NewAttributeSize; + Info.AttributeSize = (int)NewAttributeSize; } } @@ -259,7 +259,8 @@ static char *BuildLongName(const char *base_name, const ShapeID Shape, char *Ret = (char *)malloc(Len); if (StructID) { - snprintf(Ret, Len, "%s_%zd_%d_%s", Prefix, element_size, type, StructID); + snprintf(Ret, Len, "%s_%zd_%d_%s", Prefix, element_size, type, + StructID); } else { diff --git a/source/adios2/toolkit/format/bp5/BP5Serializer.h b/source/adios2/toolkit/format/bp5/BP5Serializer.h index b0f225b0df..10787c8818 100644 --- a/source/adios2/toolkit/format/bp5/BP5Serializer.h +++ b/source/adios2/toolkit/format/bp5/BP5Serializer.h @@ -38,7 +38,7 @@ class BP5Serializer : virtual public BP5Base std::vector NewMetaMetaBlocks; std::shared_ptr MetaEncodeBuffer; std::shared_ptr AttributeEncodeBuffer; - BufferV* DataBuffer; + BufferV *DataBuffer; }; typedef struct _MetadataInfo @@ -151,7 +151,7 @@ class BP5Serializer : virtual public BP5Base int DimCount; int Type; size_t MinMaxOffset; - } * BP5WriterRec; + } *BP5WriterRec; struct FFSWriterMarshalBase { diff --git a/source/adios2/toolkit/query/BlockIndex.cpp b/source/adios2/toolkit/query/BlockIndex.cpp index bf936e462e..ab5788027f 100644 --- a/source/adios2/toolkit/query/BlockIndex.cpp +++ b/source/adios2/toolkit/query/BlockIndex.cpp @@ -1,6 +1,6 @@ #include "BlockIndex.h" #include "Query.h" -//#include "BlockIndex.tcc" +// #include "BlockIndex.tcc" /* diff --git a/source/adios2/toolkit/query/Query.h b/source/adios2/toolkit/query/Query.h index 364e447762..6ac9057d9e 100644 --- a/source/adios2/toolkit/query/Query.h +++ b/source/adios2/toolkit/query/Query.h @@ -8,7 +8,7 @@ #include //std::invalid_argument std::exception #include -//#include "adios2.h" +// #include "adios2.h" #include "adios2/common/ADIOSTypes.h" #include "adios2/core/ADIOS.h" #include "adios2/core/Engine.h" diff --git a/source/adios2/toolkit/sst/cp/cp_internal.h b/source/adios2/toolkit/sst/cp/cp_internal.h index b7823b9a8f..5db5fc2f67 100644 --- a/source/adios2/toolkit/sst/cp/cp_internal.h +++ b/source/adios2/toolkit/sst/cp/cp_internal.h @@ -29,7 +29,7 @@ typedef struct _CP_GlobalCMInfo int LastCallFreeCount; void **LastCallFreeList; struct StructList CustomStructs; -} * CP_GlobalCMInfo; +} *CP_GlobalCMInfo; typedef struct _CP_Info { @@ -44,7 +44,7 @@ typedef struct _CP_Info FFSTypeHandle TimestepDistributionFormat; FFSTypeHandle ReturnMetadataInfoFormat; struct StructList CustomStructs; -} * CP_Info; +} *CP_Info; struct _ReaderRegisterMsg; @@ -53,13 +53,13 @@ typedef struct _RegisterQueue struct _ReaderRegisterMsg *Msg; CMConnection Conn; struct _RegisterQueue *Next; -} * RegisterQueue; +} *RegisterQueue; typedef struct _StepRequest { int RequestingReader; struct _StepRequest *Next; -} * StepRequest; +} *StepRequest; typedef struct _CP_PeerConnection { @@ -107,13 +107,13 @@ typedef struct _WS_ReaderInfo int ReaderCohortSize; int *Peers; CP_PeerConnection *Connections; -} * WS_ReaderInfo; +} *WS_ReaderInfo; typedef struct _TimestepMetadataList { struct _TimestepMetadataMsg *MetadataMsg; struct _TimestepMetadataList *Next; -} * TSMetadataList; +} *TSMetadataList; enum StreamRole { @@ -138,7 +138,7 @@ typedef struct _CPTimestepEntry void *FreeClientData; void *DataBlockToFree; struct _CPTimestepEntry *Next; -} * CPTimestepList; +} *CPTimestepList; typedef struct FFSFormatBlock *FFSFormatList; @@ -258,7 +258,7 @@ typedef struct _CP_ReaderInitInfo { char *ContactInfo; void *ReaderID; -} * CP_ReaderInitInfo; +} *CP_ReaderInitInfo; /* * This is the structure that holds reader_side CP and DP contact info for a @@ -345,7 +345,7 @@ typedef struct _CombinedReaderInfo void **DP_ReaderInfo; void *RankZeroID; SpeculativePreloadMode SpecPreload; // should be On or Off, not Auto -} * reader_data_t; +} *reader_data_t; /* * This is the baseline contact information for each writer-side rank. @@ -355,7 +355,7 @@ typedef struct _CP_WriterInitInfo { char *ContactInfo; void *WriterID; -} * CP_WriterInitInfo; +} *CP_WriterInitInfo; /* * Writer response messages from writer rank 0 to reader rank 0 after the @@ -381,7 +381,7 @@ typedef struct _PeerSetupMsg void *RS_Stream; int WriterRank; int WriterCohortSize; -} * PeerSetupMsg; +} *PeerSetupMsg; /* * The ReaderActivate message informs the writer that this reader is now ready @@ -416,7 +416,7 @@ typedef struct _TimestepMetadataMsg SstData Metadata; SstData AttributeData; void **DP_TimestepInfo; -} * TSMetadataMsg; +} *TSMetadataMsg; /* * The timestepMetadataDistribution message carries the metadata from rank 0 to @@ -427,7 +427,7 @@ typedef struct _TimestepMetadataDistributionMsg int ReturnValue; TSMetadataMsg TSmsg; int CommPatternLockedTimestep; -} * TSMetadataDistributionMsg; +} *TSMetadataDistributionMsg; /* * This is the structure that holds local metadata and the DP info related to @@ -439,7 +439,7 @@ typedef struct _ReleaseRec { long Timestep; void *Reader; -} * ReleaseRecPtr; +} *ReleaseRecPtr; typedef struct _ReturnMetadataInfo { @@ -452,7 +452,7 @@ typedef struct _ReturnMetadataInfo ReleaseRecPtr LockDefnsList; int LockDefnsCount; enum StreamStatus *ReaderStatus; -} * ReturnMetadataInfo; +} *ReturnMetadataInfo; /* * The ReleaseTimestep message informs the writers that this reader is done with @@ -483,7 +483,7 @@ typedef struct _CommPatternLockedMsg { void *RS_Stream; int Timestep; -} * CommPatternLockedMsg; +} *CommPatternLockedMsg; /* * The WriterClose message informs the readers that the writer is beginning an @@ -496,7 +496,7 @@ typedef struct _WriterCloseMsg { void *RS_Stream; int FinalTimestep; -} * WriterCloseMsg; +} *WriterCloseMsg; /* * The ReaderClose message informs the readers that the reader is beginning an @@ -505,7 +505,7 @@ typedef struct _WriterCloseMsg typedef struct _ReaderCloseMsg { void *WSR_Stream; -} * ReaderCloseMsg; +} *ReaderCloseMsg; /* * This is the consolidated writer contact info structure that is used to @@ -518,7 +518,7 @@ typedef struct _CombinedWriterInfo size_t StartingStepNumber; CP_WriterInitInfo *CP_WriterInfo; void **DP_WriterInfo; -} * writer_data_t; +} *writer_data_t; typedef struct _MetadataPlusDPInfo *MetadataPlusDPInfo; diff --git a/source/adios2/toolkit/sst/cp/cp_writer.c b/source/adios2/toolkit/sst/cp/cp_writer.c index d7e7e7aa06..f81dc69132 100644 --- a/source/adios2/toolkit/sst/cp/cp_writer.c +++ b/source/adios2/toolkit/sst/cp/cp_writer.c @@ -1197,8 +1197,7 @@ static void SendTimestepEntryToReaders(SstStream Stream, CPTimestepList Entry) STREAM_ASSERT_LOCKED(Stream); switch (Stream->ConfigParams->StepDistributionMode) { - case StepsAllToAll: - { + case StepsAllToAll: { for (int i = 0; i < Stream->ReaderCount; i++) { WS_ReaderInfo CP_WSR_Stream = Stream->Readers[i]; @@ -1206,8 +1205,7 @@ static void SendTimestepEntryToReaders(SstStream Stream, CPTimestepList Entry) } break; } - case StepsRoundRobin: - { + case StepsRoundRobin: { if (Stream->ReaderCount == 0) return; if (Stream->NextRRDistribution >= Stream->ReaderCount) @@ -1221,8 +1219,7 @@ static void SendTimestepEntryToReaders(SstStream Stream, CPTimestepList Entry) Stream->NextRRDistribution); Stream->NextRRDistribution++; } - case StepsOnDemand: - { + case StepsOnDemand: { if (Stream->ReaderCount == 0) return; retry: diff --git a/source/adios2/toolkit/sst/cp/ffs_marshal.c b/source/adios2/toolkit/sst/cp/ffs_marshal.c index 164d2ca0d6..5b8b11034a 100644 --- a/source/adios2/toolkit/sst/cp/ffs_marshal.c +++ b/source/adios2/toolkit/sst/cp/ffs_marshal.c @@ -546,7 +546,7 @@ typedef struct _FFSTimestepInfo { FFSBuffer MetaEncodeBuffer; FFSBuffer DataEncodeBuffer; -} * FFSTimestepInfo; +} *FFSTimestepInfo; #if defined(__has_feature) #if __has_feature(thread_sanitizer) @@ -1271,7 +1271,7 @@ typedef struct _range_list size_t start; size_t end; struct _range_list *next; -} * range_list; +} *range_list; range_list static OneDCoverage(size_t start, size_t end, range_list uncovered_list) diff --git a/source/adios2/toolkit/sst/cp/ffs_marshal.h b/source/adios2/toolkit/sst/cp/ffs_marshal.h index f25cb15176..46b15d68e4 100644 --- a/source/adios2/toolkit/sst/cp/ffs_marshal.h +++ b/source/adios2/toolkit/sst/cp/ffs_marshal.h @@ -26,7 +26,7 @@ typedef struct _FFSWriterRec size_t MetaOffset; int DimCount; int Type; -} * FFSWriterRec; +} *FFSWriterRec; struct FFSWriterMarshalBase { @@ -63,7 +63,7 @@ typedef struct FFSVarRec size_t **PerWriterCounts; void **PerWriterIncomingData; size_t *PerWriterIncomingSize; // important for compression -} * FFSVarRec; +} *FFSVarRec; enum FFSRequestTypeEnum { @@ -80,7 +80,7 @@ typedef struct FFSArrayRequest size_t *Count; void *Data; struct FFSArrayRequest *Next; -} * FFSArrayRequest; +} *FFSArrayRequest; enum WriterDataStatusEnum { diff --git a/source/adios2/toolkit/sst/dp/daos_dp.c b/source/adios2/toolkit/sst/dp/daos_dp.c index 83ac056572..d44daf893a 100644 --- a/source/adios2/toolkit/sst/dp/daos_dp.c +++ b/source/adios2/toolkit/sst/dp/daos_dp.c @@ -66,7 +66,7 @@ typedef struct _Daos_RS_Stream /* queued timestep info */ struct _RSTimestepEntry *QueuedTimesteps; -} * Daos_RS_Stream; +} *Daos_RS_Stream; typedef struct _Daos_WSR_Stream { @@ -77,7 +77,7 @@ typedef struct _Daos_WSR_Stream struct _DaosReaderContactInfo *ReaderContactInfo; struct _DaosWriterContactInfo *WriterContactInfo; /* included so we can free on destroy */ -} * Daos_WSR_Stream; +} *Daos_WSR_Stream; typedef struct _TimestepEntry { @@ -85,7 +85,7 @@ typedef struct _TimestepEntry struct _SstData Data; struct _DaosPerTimestepInfo *DP_TimestepInfo; struct _TimestepEntry *Next; -} * TimestepList; +} *TimestepList; typedef struct _RSTimestepEntry { @@ -95,7 +95,7 @@ typedef struct _RSTimestepEntry long DataSize; long DataStart; struct _RSTimestepEntry *Next; -} * RSTimestepList; +} *RSTimestepList; typedef struct _Daos_WS_Stream { @@ -109,20 +109,20 @@ typedef struct _Daos_WS_Stream int ReaderCount; Daos_WSR_Stream *Readers; -} * Daos_WS_Stream; +} *Daos_WS_Stream; typedef struct _DaosReaderContactInfo { char *ContactString; CMConnection Conn; void *RS_Stream; -} * DaosReaderContactInfo; +} *DaosReaderContactInfo; typedef struct _DaosWriterContactInfo { char *ContactString; void *WS_Stream; -} * DaosWriterContactInfo; +} *DaosWriterContactInfo; typedef struct _DaosReadRequestMsg { @@ -133,7 +133,7 @@ typedef struct _DaosReadRequestMsg void *RS_Stream; int RequestingRank; int NotifyCondition; -} * DaosReadRequestMsg; +} *DaosReadRequestMsg; static FMField DaosReadRequestList[] = { {"Timestep", "integer", sizeof(long), @@ -162,7 +162,7 @@ typedef struct _DaosReadReplyMsg void *RS_Stream; char *Data; int NotifyCondition; -} * DaosReadReplyMsg; +} *DaosReadReplyMsg; static FMField DaosReadReplyList[] = { {"Timestep", "integer", sizeof(long), FMOffset(DaosReadReplyMsg, Timestep)}, @@ -320,7 +320,7 @@ typedef struct _DaosCompletionHandle int Failed; int Rank; struct _DaosCompletionHandle *Next; -} * DaosCompletionHandle; +} *DaosCompletionHandle; static void DaosReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, attr_list attrs) @@ -585,7 +585,7 @@ typedef struct _DaosPerTimestepInfo { char *CheckString; int CheckInt; -} * DaosPerTimestepInfo; +} *DaosPerTimestepInfo; static void *DaosReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, int Rank, long Timestep, size_t Offset, diff --git a/source/adios2/toolkit/sst/dp/dp.c b/source/adios2/toolkit/sst/dp/dp.c index d1d6653697..dfde58f830 100644 --- a/source/adios2/toolkit/sst/dp/dp.c +++ b/source/adios2/toolkit/sst/dp/dp.c @@ -29,7 +29,7 @@ typedef struct _DPElement const char *Name; CP_DP_Interface Interface; long Priority; -} * DPlist; +} *DPlist; static DPlist AddDPPossibility(CP_Services Svcs, void *CP_Stream, DPlist List, CP_DP_Interface Interface, const char *Name, diff --git a/source/adios2/toolkit/sst/dp/dummy_dp.c b/source/adios2/toolkit/sst/dp/dummy_dp.c index 2c0ddb9ef3..fc4d9c3c4f 100644 --- a/source/adios2/toolkit/sst/dp/dummy_dp.c +++ b/source/adios2/toolkit/sst/dp/dummy_dp.c @@ -58,7 +58,7 @@ typedef struct _Dummy_RS_Stream int WriterCohortSize; CP_PeerCohort PeerCohort; struct _DummyWriterContactInfo *WriterContactInfo; -} * Dummy_RS_Stream; +} *Dummy_RS_Stream; typedef struct _Dummy_WSR_Stream { @@ -66,7 +66,7 @@ typedef struct _Dummy_WSR_Stream CP_PeerCohort PeerCohort; int ReaderCohortSize; struct _DummyReaderContactInfo *ReaderContactInfo; -} * Dummy_WSR_Stream; +} *Dummy_WSR_Stream; typedef struct _TimestepEntry { @@ -75,7 +75,7 @@ typedef struct _TimestepEntry struct _DummyPerTimestepInfo *DP_TimestepInfo; struct _TimestepEntry *Next; -} * TimestepList; +} *TimestepList; typedef struct _Dummy_WS_Stream { @@ -88,19 +88,19 @@ typedef struct _Dummy_WS_Stream int ReaderCount; Dummy_WSR_Stream *Readers; -} * Dummy_WS_Stream; +} *Dummy_WS_Stream; typedef struct _DummyReaderContactInfo { char *ContactString; void *RS_Stream; -} * DummyReaderContactInfo; +} *DummyReaderContactInfo; typedef struct _DummyWriterContactInfo { char *ContactString; void *WS_Stream; -} * DummyWriterContactInfo; +} *DummyWriterContactInfo; typedef struct _DummyReadRequestMsg { @@ -111,7 +111,7 @@ typedef struct _DummyReadRequestMsg void *RS_Stream; int RequestingRank; int NotifyCondition; -} * DummyReadRequestMsg; +} *DummyReadRequestMsg; static FMField DummyReadRequestList[] = { {"Timestep", "integer", sizeof(long), @@ -142,7 +142,7 @@ typedef struct _DummyReadReplyMsg void *RS_Stream; char *Data; int NotifyCondition; -} * DummyReadReplyMsg; +} *DummyReadReplyMsg; static FMField DummyReadReplyList[] = { {"Timestep", "integer", sizeof(long), @@ -279,7 +279,7 @@ typedef struct _DummyCompletionHandle void *CPStream; void *Buffer; int Rank; -} * DummyCompletionHandle; +} *DummyCompletionHandle; static void DummyReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, attr_list attrs) @@ -457,7 +457,7 @@ typedef struct _DummyPerTimestepInfo { char *CheckString; int CheckInt; -} * DummyPerTimestepInfo; +} *DummyPerTimestepInfo; /* * diff --git a/source/adios2/toolkit/sst/dp/evpath_dp.c b/source/adios2/toolkit/sst/dp/evpath_dp.c index 2ba532a6cf..8c845989a5 100644 --- a/source/adios2/toolkit/sst/dp/evpath_dp.c +++ b/source/adios2/toolkit/sst/dp/evpath_dp.c @@ -83,7 +83,7 @@ typedef struct _Evpath_RS_Stream long ReadRequestsFromPreload; SstStats Stats; long LastPreloadTimestep; -} * Evpath_RS_Stream; +} *Evpath_RS_Stream; typedef struct _Evpath_WSR_Stream { @@ -96,7 +96,7 @@ typedef struct _Evpath_WSR_Stream struct _EvpathReaderContactInfo *ReaderContactInfo; struct _EvpathWriterContactInfo *WriterContactInfo; /* included so we can free on destroy */ -} * Evpath_WSR_Stream; +} *Evpath_WSR_Stream; typedef struct _TimestepEntry { @@ -105,7 +105,7 @@ typedef struct _TimestepEntry struct _EvpathPerTimestepInfo *DP_TimestepInfo; struct _ReaderRequestTrackRec *ReaderRequests; struct _TimestepEntry *Next; -} * TimestepList; +} *TimestepList; typedef struct _RSTimestepEntry { @@ -115,14 +115,14 @@ typedef struct _RSTimestepEntry long DataSize; long DataStart; struct _RSTimestepEntry *Next; -} * RSTimestepList; +} *RSTimestepList; typedef struct _ReaderRequestTrackRec { Evpath_WSR_Stream Reader; char *RequestList; struct _ReaderRequestTrackRec *Next; -} * ReaderRequestTrackPtr; +} *ReaderRequestTrackPtr; typedef struct _Evpath_WS_Stream { @@ -138,20 +138,20 @@ typedef struct _Evpath_WS_Stream int ReaderCount; Evpath_WSR_Stream *Readers; SstStats Stats; -} * Evpath_WS_Stream; +} *Evpath_WS_Stream; typedef struct _EvpathReaderContactInfo { char *ContactString; CMConnection Conn; void *RS_Stream; -} * EvpathReaderContactInfo; +} *EvpathReaderContactInfo; typedef struct _EvpathWriterContactInfo { char *ContactString; void *WS_Stream; -} * EvpathWriterContactInfo; +} *EvpathWriterContactInfo; typedef struct _EvpathReadRequestMsg { @@ -162,7 +162,7 @@ typedef struct _EvpathReadRequestMsg void *RS_Stream; int RequestingRank; int NotifyCondition; -} * EvpathReadRequestMsg; +} *EvpathReadRequestMsg; static FMField EvpathReadRequestList[] = { {"Timestep", "integer", sizeof(long), @@ -193,7 +193,7 @@ typedef struct _EvpathReadReplyMsg void *RS_Stream; char *Data; int NotifyCondition; -} * EvpathReadReplyMsg; +} *EvpathReadReplyMsg; static FMField EvpathReadReplyList[] = { {"Timestep", "integer", sizeof(long), @@ -223,7 +223,7 @@ typedef struct _EvpathPreloadMsg int WriterRank; void *RS_Stream; char *Data; -} * EvpathPreloadMsg; +} *EvpathPreloadMsg; static FMField EvpathPreloadList[] = { {"Timestep", "integer", sizeof(long), FMOffset(EvpathPreloadMsg, Timestep)}, @@ -482,7 +482,7 @@ typedef struct _EvpathCompletionHandle long Offset; long Length; struct _EvpathCompletionHandle *Next; -} * EvpathCompletionHandle; +} *EvpathCompletionHandle; // reader-side routine called by the network handler thread static void EvpathReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, @@ -976,7 +976,7 @@ typedef struct _EvpathPerTimestepInfo { char *CheckString; int CheckInt; -} * EvpathPerTimestepInfo; +} *EvpathPerTimestepInfo; // reader-side routine, called from the main program static void *EvpathReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, diff --git a/source/adios2/toolkit/sst/dp/mpi_dp.c b/source/adios2/toolkit/sst/dp/mpi_dp.c index 7604adf59e..a4eda3b79d 100644 --- a/source/adios2/toolkit/sst/dp/mpi_dp.c +++ b/source/adios2/toolkit/sst/dp/mpi_dp.c @@ -50,14 +50,14 @@ typedef struct _MpiReaderContactInfo { char ContactString[MPI_DP_CONTACT_STRING_LEN]; void *StreamRS; -} * MpiReaderContactInfo; +} *MpiReaderContactInfo; typedef struct _MpiWriterContactInfo { char ContactString[MPI_DP_CONTACT_STRING_LEN]; void *StreamWPR; int PID; -} * MpiWriterContactInfo; +} *MpiWriterContactInfo; /* Base Stream class, used implicitly */ typedef struct _MpiStream @@ -89,7 +89,7 @@ typedef struct _MpiStreamRD struct _MpiReaderContactInfo MyContactInfo; struct _MpiWriterContactInfo *CohortWriterInfo; MPI_Comm *CohortMpiComms; -} * MpiStreamRD; +} *MpiStreamRD; /** * Writers Stream. @@ -107,7 +107,7 @@ typedef struct _MpiStreamWR TAILQ_HEAD(ReadersListHead, _MpiStreamWPR) Readers; pthread_rwlock_t LockTS; pthread_mutex_t MutexReaders; -} * MpiStreamWR; +} *MpiStreamWR; /** * WritersPerReader streams. @@ -126,14 +126,14 @@ typedef struct _MpiStreamWPR char MpiPortName[MPI_MAX_PORT_NAME]; TAILQ_ENTRY(_MpiStreamWPR) entries; -} * MpiStreamWPR; +} *MpiStreamWPR; typedef struct _TimeStepsEntry { long TimeStep; struct _SstData *Data; STAILQ_ENTRY(_TimeStepsEntry) entries; -} * TimeStepsEntry; +} *TimeStepsEntry; /*****Message Data Structures ***********************************************/ @@ -156,7 +156,7 @@ typedef struct _MpiReadRequestMsg size_t Offset; void *StreamRS; void *StreamWPR; -} * MpiReadRequestMsg; +} *MpiReadRequestMsg; typedef struct _MpiReadReplyMsg { @@ -166,7 +166,7 @@ typedef struct _MpiReadReplyMsg long TimeStep; size_t DataLength; void *StreamRS; -} * MpiReadReplyMsg; +} *MpiReadReplyMsg; typedef struct _MpiCompletionHandle { @@ -177,7 +177,7 @@ typedef struct _MpiCompletionHandle void *Buffer; int DestinationRank; enum MPI_DP_COMM_TYPE CommType; -} * MpiCompletionHandle; +} *MpiCompletionHandle; static FMField MpiReadRequestList[] = { {"TimeStep", "integer", sizeof(long), diff --git a/source/adios2/toolkit/sst/dp/rdma_dp.c b/source/adios2/toolkit/sst/dp/rdma_dp.c index 427488e541..276fa6cf4c 100644 --- a/source/adios2/toolkit/sst/dp/rdma_dp.c +++ b/source/adios2/toolkit/sst/dp/rdma_dp.c @@ -448,26 +448,26 @@ typedef struct _RdmaCompletionHandle int Rank; int Pending; void *PreloadBuffer; -} * RdmaCompletionHandle; +} *RdmaCompletionHandle; typedef struct _RdmaBufferHandle { uint8_t *Block; uint64_t Key; -} * RdmaBufferHandle; +} *RdmaBufferHandle; typedef struct _RdmaBuffer { struct _RdmaBufferHandle Handle; uint64_t BufferLen; uint64_t Offset; -} * RdmaBuffer; +} *RdmaBuffer; typedef struct _RdmaReqLogEntry { size_t Offset; size_t Length; -} * RdmaReqLogEntry; +} *RdmaReqLogEntry; typedef struct _RdmaRankReqLog { @@ -490,7 +490,7 @@ typedef struct _RdmaRankReqLog struct _RdmaRankReqLog *next; // Writer side }; RdmaCompletionHandle *PreloadHandles; -} * RdmaRankReqLog; +} *RdmaRankReqLog; typedef struct _RdmaStepLogEntry { @@ -500,7 +500,7 @@ typedef struct _RdmaStepLogEntry int Entries; long BufferSize; int WRanks; -} * RdmaStepLogEntry; +} *RdmaStepLogEntry; typedef struct _Rdma_RS_Stream { @@ -536,13 +536,13 @@ typedef struct _Rdma_RS_Stream void *RecvDataBuffer; struct fid_mr *rbmr; void *rbdesc; -} * Rdma_RS_Stream; +} *Rdma_RS_Stream; typedef struct _RdmaPerTimestepInfo { uint8_t *Block; uint64_t Key; -} * RdmaPerTimestepInfo; +} *RdmaPerTimestepInfo; typedef struct _TimestepEntry { @@ -555,7 +555,7 @@ typedef struct _TimestepEntry uint64_t Key; uint64_t OutstandingWrites; int BufferSlot; -} * TimestepList; +} *TimestepList; typedef struct _Rdma_WSR_Stream { @@ -572,7 +572,7 @@ typedef struct _Rdma_WSR_Stream RdmaRankReqLog PreloadReq; TimestepList LastReleased; int PreloadUsed[2]; -} * Rdma_WSR_Stream; +} *Rdma_WSR_Stream; typedef struct _Rdma_WS_Stream { @@ -585,14 +585,14 @@ typedef struct _Rdma_WS_Stream TimestepList Timesteps; int ReaderCount; Rdma_WSR_Stream *Readers; -} * Rdma_WS_Stream; +} *Rdma_WS_Stream; typedef struct _RdmaReaderContactInfo { void *RS_Stream; size_t Length; void *Address; -} * RdmaReaderContactInfo; +} *RdmaReaderContactInfo; typedef struct _RdmaWriterContactInfo { @@ -600,7 +600,7 @@ typedef struct _RdmaWriterContactInfo size_t Length; void *Address; struct _RdmaBufferHandle ReaderRollHandle; -} * RdmaWriterContactInfo; +} *RdmaWriterContactInfo; static TimestepList GetStep(Rdma_WS_Stream Stream, long Timestep) { diff --git a/source/adios2/toolkit/sst/dp/ucx_dp.c b/source/adios2/toolkit/sst/dp/ucx_dp.c index 78080d0292..acabb7ee4a 100644 --- a/source/adios2/toolkit/sst/dp/ucx_dp.c +++ b/source/adios2/toolkit/sst/dp/ucx_dp.c @@ -171,21 +171,21 @@ typedef struct _UcxCompletionHandle size_t Length; int Rank; int Pending; -} * UcxCompletionHandle; +} *UcxCompletionHandle; typedef struct _UcxBufferHandle { void *Block; size_t rkey_size; char *rkey; -} * UcxBufferHandle; +} *UcxBufferHandle; typedef struct _UcxBuffer { struct _UcxBufferHandle Handle; uint64_t BufferLen; uint64_t Offset; -} * UcxBuffer; +} *UcxBuffer; typedef struct _Ucx_RS_Stream { @@ -200,7 +200,7 @@ typedef struct _Ucx_RS_Stream CP_PeerCohort PeerCohort; struct _UcxWriterContactInfo *WriterContactInfo; ucp_ep_h *WriterEP; -} * Ucx_RS_Stream; +} *Ucx_RS_Stream; typedef struct _TimestepEntry { @@ -211,7 +211,7 @@ typedef struct _TimestepEntry ucp_mem_h memh; void *rkey; size_t rkey_size; -} * TimestepList; +} *TimestepList; typedef struct _Ucx_WSR_Stream { @@ -219,7 +219,7 @@ typedef struct _Ucx_WSR_Stream CP_PeerCohort PeerCohort; int ReaderCohortSize; struct _UcxWriterContactInfo *WriterContactInfo; -} * Ucx_WSR_Stream; +} *Ucx_WSR_Stream; typedef struct _Ucx_WS_Stream { @@ -232,19 +232,19 @@ typedef struct _Ucx_WS_Stream int ReaderCount; Ucx_WSR_Stream *Readers; -} * Ucx_WS_Stream; +} *Ucx_WS_Stream; typedef struct _UcxReaderContactInfo { void *RS_Stream; -} * UcxReaderContactInfo; +} *UcxReaderContactInfo; typedef struct _UcxWriterContactInfo { void *WS_Stream; size_t Length; void *Address; -} * UcxWriterContactInfo; +} *UcxWriterContactInfo; static DP_RS_Stream UcxInitReader(CP_Services Svcs, void *CP_Stream, void **ReaderContactInfoPtr, diff --git a/source/adios2/toolkit/sst/sst_data.h b/source/adios2/toolkit/sst/sst_data.h index 02955b1dff..1d46cc5232 100644 --- a/source/adios2/toolkit/sst/sst_data.h +++ b/source/adios2/toolkit/sst/sst_data.h @@ -51,7 +51,7 @@ typedef struct _SstStats size_t PreloadTimestepsReceived; size_t BytesRead; double RunningFanIn; -} * SstStats; +} *SstStats; #define SST_FOREACH_PARAMETER_TYPE_4ARGS(MACRO) \ MACRO(MarshalMethod, MarshalMethod, size_t, SstMarshalBP5) \ diff --git a/source/adios2/toolkit/transport/file/FileAWSSDK.cpp b/source/adios2/toolkit/transport/file/FileAWSSDK.cpp index 43cb271513..e84aef1bd7 100644 --- a/source/adios2/toolkit/transport/file/FileAWSSDK.cpp +++ b/source/adios2/toolkit/transport/file/FileAWSSDK.cpp @@ -175,8 +175,7 @@ void FileAWSSDK::Open(const std::string &name, const Mode openMode, "does not support writing yet " + m_Name); break; - case Mode::Read: - { + case Mode::Read: { ProfilerStart("open"); errno = 0; Aws::S3::Model::HeadObjectRequest head_object_request; diff --git a/source/adios2/toolkit/transport/file/FileDaos.cpp b/source/adios2/toolkit/transport/file/FileDaos.cpp index ab4f20df7f..43545d617f 100644 --- a/source/adios2/toolkit/transport/file/FileDaos.cpp +++ b/source/adios2/toolkit/transport/file/FileDaos.cpp @@ -27,7 +27,7 @@ #include #include -//#include "adios2/helper/adiosFunctions.h" +// #include "adios2/helper/adiosFunctions.h" #define CheckDAOSReturnCode(r) CheckDAOSReturnCodeF((r), __FILE__, __LINE__) #define DefaultMaxDFSBatchSize 8589934592 diff --git a/source/h5vol/H5VolError.h b/source/h5vol/H5VolError.h index 824a45f5ad..1c2cceba96 100644 --- a/source/h5vol/H5VolError.h +++ b/source/h5vol/H5VolError.h @@ -68,7 +68,7 @@ void *safe_ralloc(void *ptr, size_t newsize, unsigned long line); return errReturn; \ }; -//#define REQUIRE_MPI_SUCC(err) if (err != MPI_SUCCESS) +// #define REQUIRE_MPI_SUCC(err) if (err != MPI_SUCCESS) //{ADIOS_VOL_MPI_ERR(err);} #define REQUIRE_MPI_SUCC(err) \ if (err != MPI_SUCCESS) \ diff --git a/source/h5vol/H5Vol_attr.c b/source/h5vol/H5Vol_attr.c index 7a957c6c4e..8b7407fde7 100644 --- a/source/h5vol/H5Vol_attr.c +++ b/source/h5vol/H5Vol_attr.c @@ -139,13 +139,11 @@ void GetFromAttribute(void *attrObj, hid_t *ret_id, H5VL_attr_get_t get_type) switch (get_type) { - case H5VL_ATTR_GET_SPACE: - { + case H5VL_ATTR_GET_SPACE: { *ret_id = H5Scopy(attrDef->m_SpaceID); break; } - case H5VL_ATTR_GET_TYPE: - { + case H5VL_ATTR_GET_TYPE: { *ret_id = H5Tcopy(attrDef->m_TypeID); break; } @@ -162,14 +160,12 @@ herr_t H5VL_adios2_attr_get(void *obj, H5VL_attr_get_args_t *args, switch (args->op_type) { - case H5VL_ATTR_GET_SPACE: - { + case H5VL_ATTR_GET_SPACE: { hid_t *ret_id = (hid_t *)args->args.get_space.space_id; GetFromAttribute((vol->m_ObjPtr), ret_id, args->op_type); return 0; } - case H5VL_ATTR_GET_TYPE: - { + case H5VL_ATTR_GET_TYPE: { hid_t *ret_id = (hid_t *)args->args.get_type.type_id; GetFromAttribute((vol->m_ObjPtr), ret_id, args->op_type); return 0; @@ -180,8 +176,7 @@ herr_t H5VL_adios2_attr_get(void *obj, H5VL_attr_get_args_t *args, switch (args->op_type) { - case H5VL_ATTR_GET_NAME: - { + case H5VL_ATTR_GET_NAME: { char *buf = args->args.get_name.buf; size_t *ret_val = (size_t *)args->args.get_name.attr_name_len; @@ -243,8 +238,7 @@ herr_t H5VL_adios2_attr_specific(void *obj, const H5VL_loc_params_t *loc_params, switch (args->op_type) { - case H5VL_ATTR_DELETE: - { + case H5VL_ATTR_DELETE: { attr_name = (const char *)args->args.del.name; attr = gLocateAttrFrom(vol, attr_name); @@ -261,8 +255,7 @@ herr_t H5VL_adios2_attr_specific(void *obj, const H5VL_loc_params_t *loc_params, return 0; } } - case H5VL_ATTR_EXISTS: - { + case H5VL_ATTR_EXISTS: { hbool_t *ret = args->args.exists.exists; attr_name = (const char *)args->args.exists.name; diff --git a/source/h5vol/H5Vol_dataset.c b/source/h5vol/H5Vol_dataset.c index 1a969db85e..35da630b57 100644 --- a/source/h5vol/H5Vol_dataset.c +++ b/source/h5vol/H5Vol_dataset.c @@ -119,20 +119,17 @@ herr_t H5VL_adios2_dataset_get(void *dset, H5VL_dataset_get_args_t *args, switch (args->op_type) { - case H5VL_DATASET_GET_SPACE: - { + case H5VL_DATASET_GET_SPACE: { REQUIRE_SUCC_MSG((varDef->m_ShapeID >= 0), -1, "H5VOL-ADIOS2: Unable to get space id."); args->args.get_space.space_id = H5Scopy(varDef->m_ShapeID); break; } - case H5VL_DATASET_GET_TYPE: - { + case H5VL_DATASET_GET_TYPE: { args->args.get_type.type_id = H5Tcopy(varDef->m_TypeID); break; } - default: - { + default: { return -1; } } diff --git a/source/h5vol/H5Vol_group.c b/source/h5vol/H5Vol_group.c index 4f87fc3846..6a1089723c 100644 --- a/source/h5vol/H5Vol_group.c +++ b/source/h5vol/H5Vol_group.c @@ -64,8 +64,7 @@ herr_t H5VL_adios2_group_get(void *obj, H5VL_group_get_args_t *args, switch (args->op_type) { - case H5VL_GROUP_GET_INFO: - { + case H5VL_GROUP_GET_INFO: { const H5VL_loc_params_t *loc_params = &args->args.get_info.loc_params; H5G_info_t *group_info = args->args.get_info.ginfo; diff --git a/source/h5vol/H5Vol_link.c b/source/h5vol/H5Vol_link.c index 1bbe5ac80b..fdf4b832e7 100644 --- a/source/h5vol/H5Vol_link.c +++ b/source/h5vol/H5Vol_link.c @@ -16,8 +16,7 @@ herr_t H5VL_adios2_link_specific(void *obj, const H5VL_loc_params_t *loc_params, switch (args->op_type) { - case H5VL_LINK_EXISTS: - { + case H5VL_LINK_EXISTS: { if ((GROUP == vol->m_ObjType) || (ROOT == vol->m_ObjType)) { hbool_t *ret = args->args.exists.exists; @@ -28,8 +27,7 @@ herr_t H5VL_adios2_link_specific(void *obj, const H5VL_loc_params_t *loc_params, return 0; } - case H5VL_LINK_DELETE: - { + case H5VL_LINK_DELETE: { ADIOS_VOL_WARN( "link does not have effect if already written in file ..\n"); @@ -63,8 +61,7 @@ herr_t H5VL_adios2_link_get(void *obj, const H5VL_loc_params_t *loc_params, H5VL_ObjDef_t *vol = (H5VL_ObjDef_t *)obj; switch (args->op_type) { - case H5VL_LINK_GET_NAME: - { + case H5VL_LINK_GET_NAME: { char *name = args->args.get_name.name; size_t *ret = (size_t *)args->args.get_name.name_len; diff --git a/source/h5vol/H5Vol_object.c b/source/h5vol/H5Vol_object.c index 69fa1fa8d3..0b2ce0b74e 100644 --- a/source/h5vol/H5Vol_object.c +++ b/source/h5vol/H5Vol_object.c @@ -19,8 +19,7 @@ void *H5VL_adios2_object_open(void *obj, const H5VL_loc_params_t *loc_params, switch (loc_params->type) { - case H5VL_OBJECT_BY_NAME: - { + case H5VL_OBJECT_BY_NAME: { const char *obj_name = loc_params->loc_data.loc_by_name.name; adios2_attribute *attr = gLocateAttrFrom(vol, obj_name); @@ -68,8 +67,7 @@ herr_t H5VL_adios2_object_get(void *obj, const H5VL_loc_params_t *loc_params, switch (args->op_type) { - case H5VL_OBJECT_GET_INFO: - { + case H5VL_OBJECT_GET_INFO: { H5O_info2_t *oinfo = args->args.get_info.oinfo; if (loc_params->type == H5VL_OBJECT_BY_SELF) { diff --git a/source/utils/adios_iotest/adios_iotest.cpp b/source/utils/adios_iotest/adios_iotest.cpp index 072fc8fe95..3ec823d163 100644 --- a/source/utils/adios_iotest/adios_iotest.cpp +++ b/source/utils/adios_iotest/adios_iotest.cpp @@ -229,8 +229,7 @@ int main(int argc, char *argv[]) switch (cmd->op) { - case Operation::Sleep: - { + case Operation::Sleep: { std::chrono::high_resolution_clock::time_point start = std::chrono::high_resolution_clock::now(); adios.EnterComputationBlock(); @@ -255,8 +254,7 @@ int main(int argc, char *argv[]) } break; } - case Operation::Busy: - { + case Operation::Busy: { auto cmdS = dynamic_cast(cmd.get()); std::chrono::high_resolution_clock::time_point start = std::chrono::high_resolution_clock::now(); @@ -307,16 +305,14 @@ int main(int argc, char *argv[]) } break; } - case Operation::Write: - { + case Operation::Write: { auto cmdW = dynamic_cast(cmd.get()); auto stream = writeStreamMap[cmdW->streamName]; // auto io = ioMap[cmdW->groupName]; stream->Write(cmdW, cfg, settings, step); break; } - case Operation::Read: - { + case Operation::Read: { auto cmdR = dynamic_cast(cmd.get()); auto statusIt = cfg.condMap.find(cmdR->streamName); if (statusIt->second == adios2::StepStatus::OK || diff --git a/source/utils/adios_iotest/processConfig.cpp b/source/utils/adios_iotest/processConfig.cpp index e3b373872c..5c812f1903 100644 --- a/source/utils/adios_iotest/processConfig.cpp +++ b/source/utils/adios_iotest/processConfig.cpp @@ -328,23 +328,20 @@ void printConfig(const Config &cfg) } switch (cmd->op) { - case Operation::Sleep: - { + case Operation::Sleep: { auto cmdS = dynamic_cast(cmd.get()); std::cout << " Sleep for " << cmdS->sleepTime_us << " microseconds " << std::endl; break; } - case Operation::Busy: - { + case Operation::Busy: { auto cmdS = dynamic_cast(cmd.get()); std::cout << " Be busy for " << cmdS->cycles << " compute cycles with " << cmdS->busyTime_us << " microseconds of computation each " << std::endl; break; } - case Operation::Write: - { + case Operation::Write: { auto cmdW = dynamic_cast(cmd.get()); std::cout << " Write to output " << cmdW->streamName << " the group " << cmdW->groupName; @@ -360,8 +357,7 @@ void printConfig(const Config &cfg) std::cout << std::endl; break; } - case Operation::Read: - { + case Operation::Read: { auto cmdR = dynamic_cast(cmd.get()); std::cout << " Read "; if (cmdR->stepMode == adios2::StepMode::Read) diff --git a/source/utils/adios_iotest/stream.cpp b/source/utils/adios_iotest/stream.cpp index be735ff723..8f32075599 100644 --- a/source/utils/adios_iotest/stream.cpp +++ b/source/utils/adios_iotest/stream.cpp @@ -59,16 +59,14 @@ std::shared_ptr openStream(const std::string &streamName, std::shared_ptr sp; switch (iolib) { - case IOLib::ADIOS: - { + case IOLib::ADIOS: { auto s = adiosStream(streamName, iogroup->adiosio, mode, comm, iotimer, appid); sp = std::make_shared(s); break; } #ifdef ADIOS2_HAVE_HDF5_PARALLEL - case IOLib::HDF5: - { + case IOLib::HDF5: { auto s = hdf5Stream(streamName, mode, comm); sp = std::make_shared(s); break; diff --git a/source/utils/adios_reorganize/Reorganize.cpp b/source/utils/adios_reorganize/Reorganize.cpp index 90de55c90e..4af70a8575 100644 --- a/source/utils/adios_reorganize/Reorganize.cpp +++ b/source/utils/adios_reorganize/Reorganize.cpp @@ -224,7 +224,7 @@ void Reorganize::Run() // PRIVATE template -void Reorganize::osprint0(std::ostream &out, Arg &&arg, Args &&... args) +void Reorganize::osprint0(std::ostream &out, Arg &&arg, Args &&...args) { if (!m_Rank) { @@ -236,7 +236,7 @@ void Reorganize::osprint0(std::ostream &out, Arg &&arg, Args &&... args) } template -void Reorganize::print0(Arg &&arg, Args &&... args) +void Reorganize::print0(Arg &&arg, Args &&...args) { if (!m_Rank) { diff --git a/source/utils/adios_reorganize/Reorganize.h b/source/utils/adios_reorganize/Reorganize.h index e8ce0e1f4d..51f2600993 100644 --- a/source/utils/adios_reorganize/Reorganize.h +++ b/source/utils/adios_reorganize/Reorganize.h @@ -102,10 +102,10 @@ class Reorganize : public Utils int decomp_values[10] = {1, 1, 1, 1, 1, 1, 1, 1, 1, 1}; template - void print0(Arg &&arg, Args &&... args); + void print0(Arg &&arg, Args &&...args); template - void osprint0(std::ostream &out, Arg &&arg, Args &&... args); + void osprint0(std::ostream &out, Arg &&arg, Args &&...args); }; } // end namespace utils diff --git a/source/utils/bpls/bpls.cpp b/source/utils/bpls/bpls.cpp index 553db18321..fe591d5e08 100644 --- a/source/utils/bpls/bpls.cpp +++ b/source/utils/bpls/bpls.cpp @@ -2899,8 +2899,7 @@ int print_data(const void *data, int item, DataType adiosvartype, fprintf(outf, (f ? fmt : "%hhd"), ((signed char *)data)[item]); break; - case DataType::String: - { + case DataType::String: { // fprintf(outf, (f ? fmt : "\"%s\""), ((char *)data) + item); const std::string *dataStr = reinterpret_cast(data); diff --git a/testing/adios2/performance/query/TestBPQuery.cpp b/testing/adios2/performance/query/TestBPQuery.cpp index ce6eed40af..7aca67b9fd 100644 --- a/testing/adios2/performance/query/TestBPQuery.cpp +++ b/testing/adios2/performance/query/TestBPQuery.cpp @@ -14,7 +14,7 @@ #include -//#include "../engine/SmallTestData.h" +// #include "../engine/SmallTestData.h" // std::string engineName; // comes from command line diff --git a/testing/h5vol/TestH5VolWriteReadBPFile.cpp b/testing/h5vol/TestH5VolWriteReadBPFile.cpp index fd99527712..0ac1f61d9f 100644 --- a/testing/h5vol/TestH5VolWriteReadBPFile.cpp +++ b/testing/h5vol/TestH5VolWriteReadBPFile.cpp @@ -655,7 +655,7 @@ TEST_F(H5VolWriteReadTest, H5VolWriteHDF5Read1D8) ASSERT_EQ(gDims[0], globalArraySize); hdf5Reader.ReadVar("r64", R64.data(), offset, count, arraySize); - //#EXPECT_EQ(IString, currentTestData.S1); + // #EXPECT_EQ(IString, currentTestData.S1); // Check if it's correct for (size_t i = 0; i < Nx; ++i) From ea1b1a30d3ed12bfed9446329265455901bd5754 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Fri, 28 Jul 2023 13:23:42 -0400 Subject: [PATCH 046/183] format,flake8: update python formatting --- .../bindings/python/TestBPChangingShapeHighLevelAPI.py | 2 +- .../adios2/bindings/python/TestBPPNGHighLevelAPI.py | 8 ++++---- .../bindings/python/TestBPWriteTypesHighLevelAPI.py | 2 +- .../adios2/bindings/python/TestBPZfpHighLevelAPI.py | 4 ++-- testing/adios2/bindings/python/TestNullEngine.py | 10 +++++----- 5 files changed, 13 insertions(+), 13 deletions(-) diff --git a/testing/adios2/bindings/python/TestBPChangingShapeHighLevelAPI.py b/testing/adios2/bindings/python/TestBPChangingShapeHighLevelAPI.py index 3d6431bf24..0fbd3d89b2 100644 --- a/testing/adios2/bindings/python/TestBPChangingShapeHighLevelAPI.py +++ b/testing/adios2/bindings/python/TestBPChangingShapeHighLevelAPI.py @@ -34,4 +34,4 @@ for f_step in f: shape_z = int(f_step.available_variables()['z']['Shape']) print(shape_z) - assert(shape_z == int(shape[f_step.current_step()][0])) + assert (shape_z == int(shape[f_step.current_step()][0])) diff --git a/testing/adios2/bindings/python/TestBPPNGHighLevelAPI.py b/testing/adios2/bindings/python/TestBPPNGHighLevelAPI.py index 471abcc426..fc3588b8f4 100644 --- a/testing/adios2/bindings/python/TestBPPNGHighLevelAPI.py +++ b/testing/adios2/bindings/python/TestBPPNGHighLevelAPI.py @@ -75,10 +75,10 @@ def CompressPNG(compression_level): for i in range(0, Nx): for j in range(0, Ny): - assert(u32s[i][j] == in_u32s[i][j]) - assert(u8s[i][j][0] == in_u8s[i][j][0]) - assert(u8s[i][j][1] == in_u8s[i][j][1]) - assert(u8s[i][j][2] == in_u8s[i][j][2]) + assert (u32s[i][j] == in_u32s[i][j]) + assert (u8s[i][j][0] == in_u8s[i][j][0]) + assert (u8s[i][j][1] == in_u8s[i][j][1]) + assert (u8s[i][j][2] == in_u8s[i][j][2]) def main(): diff --git a/testing/adios2/bindings/python/TestBPWriteTypesHighLevelAPI.py b/testing/adios2/bindings/python/TestBPWriteTypesHighLevelAPI.py index 8033b6609b..d3eb4b58dc 100644 --- a/testing/adios2/bindings/python/TestBPWriteTypesHighLevelAPI.py +++ b/testing/adios2/bindings/python/TestBPWriteTypesHighLevelAPI.py @@ -110,7 +110,7 @@ with adios2.open("types_np.bp", "r", comm) as fr: # file only - assert(fr.steps() == 5) + assert (fr.steps() == 5) for fr_step in fr: diff --git a/testing/adios2/bindings/python/TestBPZfpHighLevelAPI.py b/testing/adios2/bindings/python/TestBPZfpHighLevelAPI.py index b97d8c18c1..d3df52e05c 100644 --- a/testing/adios2/bindings/python/TestBPZfpHighLevelAPI.py +++ b/testing/adios2/bindings/python/TestBPZfpHighLevelAPI.py @@ -61,8 +61,8 @@ def CompressZfp2D(rate): for j in range(0, Ny): for i in range(0, Nx): - assert(abs(r32s[j][i] - in_r32s[j][i]) < 1E-4) - assert(abs(r64s[j][i] - in_r64s[j][i]) < 1E-4) + assert (abs(r32s[j][i] - in_r32s[j][i]) < 1E-4) + assert (abs(r64s[j][i] - in_r64s[j][i]) < 1E-4) def main(): diff --git a/testing/adios2/bindings/python/TestNullEngine.py b/testing/adios2/bindings/python/TestNullEngine.py index 1d3ed6ca1d..dfe1c0069c 100644 --- a/testing/adios2/bindings/python/TestNullEngine.py +++ b/testing/adios2/bindings/python/TestNullEngine.py @@ -42,10 +42,10 @@ nullWriter = ioWrite.Open('NULL_py.bp', adios2.Mode.Write) -assert(nullWriter.Type() == "NullWriter") +assert (nullWriter.Type() == "NullWriter") status = nullWriter.BeginStep() -assert(status == adios2.StepStatus.OK) +assert (status == adios2.StepStatus.OK) nullWriter.Put(varTemperature, temperatures) nullWriter.EndStep() @@ -56,16 +56,16 @@ ioRead.SetEngine("null") nullReader = ioRead.Open('NULL_py.bp', adios2.Mode.Read, MPI.COMM_SELF) -assert(nullReader.Type() == "NullReader") +assert (nullReader.Type() == "NullReader") inTemperatures = np.zeros(1, dtype=np.int32) status = nullReader.BeginStep() -assert(status == adios2.StepStatus.EndOfStream) +assert (status == adios2.StepStatus.EndOfStream) var_inTemperature = ioRead.InquireVariable("temperature2D") -if(var_inTemperature is True): +if (var_inTemperature is True): raise ValueError('var_inTemperature is not False') # nullReader.Get(var_inTemperature, inTemperatures) From 85b80fdd42d3eb10651d918b6b2c48770d6bb847 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Fri, 28 Jul 2023 15:25:52 -0400 Subject: [PATCH 047/183] format,code: change max chars per line to 100 --- .clang-format | 2 +- bindings/C/adios2/c/adios2_c_adios.cpp | 78 +- bindings/C/adios2/c/adios2_c_adios.h | 9 +- bindings/C/adios2/c/adios2_c_adios_mpi.cpp | 15 +- bindings/C/adios2/c/adios2_c_attribute.cpp | 108 +-- bindings/C/adios2/c/adios2_c_attribute.h | 15 +- bindings/C/adios2/c/adios2_c_engine.cpp | 418 ++++----- bindings/C/adios2/c/adios2_c_engine.h | 44 +- bindings/C/adios2/c/adios2_c_internal.h | 52 +- bindings/C/adios2/c/adios2_c_io.cpp | 404 ++++----- bindings/C/adios2/c/adios2_c_io.h | 79 +- bindings/C/adios2/c/adios2_c_io_mpi.cpp | 13 +- bindings/C/adios2/c/adios2_c_operator.cpp | 13 +- bindings/C/adios2/c/adios2_c_operator.h | 3 +- bindings/C/adios2/c/adios2_c_variable.cpp | 324 +++---- bindings/C/adios2/c/adios2_c_variable.h | 57 +- bindings/CXX11/adios2/cxx11/ADIOS.cpp | 3 +- bindings/CXX11/adios2/cxx11/ADIOS.h | 38 +- bindings/CXX11/adios2/cxx11/ADIOSMPI.cpp | 9 +- bindings/CXX11/adios2/cxx11/Attribute.cpp | 113 ++- bindings/CXX11/adios2/cxx11/Engine.cpp | 264 +++--- bindings/CXX11/adios2/cxx11/Engine.h | 70 +- bindings/CXX11/adios2/cxx11/Engine.tcc | 139 ++- bindings/CXX11/adios2/cxx11/Group.cpp | 17 +- bindings/CXX11/adios2/cxx11/Group.h | 3 +- bindings/CXX11/adios2/cxx11/Group.tcc | 17 +- bindings/CXX11/adios2/cxx11/IO.cpp | 118 ++- bindings/CXX11/adios2/cxx11/IO.h | 52 +- bindings/CXX11/adios2/cxx11/IO.tcc | 57 +- bindings/CXX11/adios2/cxx11/IOMPI.cpp | 3 +- bindings/CXX11/adios2/cxx11/KokkosView.h | 4 +- bindings/CXX11/adios2/cxx11/Operator.cpp | 5 +- bindings/CXX11/adios2/cxx11/Query.cpp | 8 +- bindings/CXX11/adios2/cxx11/Query.h | 5 +- bindings/CXX11/adios2/cxx11/Types.cpp | 3 +- bindings/CXX11/adios2/cxx11/Variable.cpp | 472 +++++----- bindings/CXX11/adios2/cxx11/Variable.h | 12 +- bindings/CXX11/adios2/cxx11/Variable.tcc | 42 +- bindings/CXX11/adios2/cxx11/VariableNT.cpp | 291 +++--- bindings/CXX11/adios2/cxx11/VariableNT.h | 10 +- .../adios2/cxx11/fstream/ADIOS2fstream.cpp | 129 ++- .../adios2/cxx11/fstream/ADIOS2fstream.h | 163 ++-- .../adios2/cxx11/fstream/ADIOS2fstream.tcc | 93 +- .../adios2/cxx11/fstream/ADIOS2fstreamMPI.cpp | 22 +- bindings/Fortran/f2c/adios2_f2c_adios.cpp | 44 +- bindings/Fortran/f2c/adios2_f2c_adios_mpi.cpp | 16 +- bindings/Fortran/f2c/adios2_f2c_attribute.cpp | 40 +- bindings/Fortran/f2c/adios2_f2c_engine.cpp | 86 +- bindings/Fortran/f2c/adios2_f2c_io.cpp | 228 ++--- bindings/Fortran/f2c/adios2_f2c_io_mpi.cpp | 12 +- bindings/Fortran/f2c/adios2_f2c_operator.cpp | 7 +- bindings/Fortran/f2c/adios2_f2c_variable.cpp | 120 +-- bindings/Matlab/adiosclosec.c | 13 +- bindings/Matlab/adiosopenc.c | 95 +- bindings/Matlab/adiosreadc.c | 88 +- bindings/Python/py11ADIOS.cpp | 3 +- bindings/Python/py11ADIOSMPI.cpp | 3 +- bindings/Python/py11Attribute.cpp | 47 +- bindings/Python/py11Engine.cpp | 182 ++-- bindings/Python/py11Engine.h | 13 +- bindings/Python/py11File.cpp | 210 ++--- bindings/Python/py11File.h | 69 +- bindings/Python/py11File.tcc | 8 +- bindings/Python/py11FileMPI.cpp | 7 +- bindings/Python/py11IO.cpp | 111 +-- bindings/Python/py11IO.h | 18 +- bindings/Python/py11IOMPI.cpp | 6 +- bindings/Python/py11Operator.cpp | 13 +- bindings/Python/py11Query.cpp | 8 +- bindings/Python/py11Variable.cpp | 56 +- bindings/Python/py11glue.cpp | 289 +++--- bindings/Python/py11types.h | 9 +- .../basics/globalArray/globalArray_write.cpp | 4 +- .../basics/joinedArray/joinedArray_write.cpp | 8 +- .../basics/localArray/localArray_read.cpp | 16 +- .../basics/localArray/localArray_write.cpp | 6 +- examples/basics/values/values_write.cpp | 3 +- examples/cuda/cudaBPWriteRead.cu | 9 +- .../runtimeconfig/hello/helloBPWriterXML.cpp | 14 +- .../hello/helloBPWriterXML_nompi.cpp | 10 +- examples/fides/01_onecell/fides_onecell.cpp | 4 +- examples/h5subfile/h5_subfile.cpp | 46 +- examples/heatTransfer/inline/InlineIO.cpp | 22 +- examples/heatTransfer/inline/main.cpp | 9 +- examples/heatTransfer/read/PrintDataStep.h | 12 +- examples/heatTransfer/read/ReadSettings.cpp | 14 +- examples/heatTransfer/read/ReadSettings.h | 6 +- examples/heatTransfer/read/heatRead.cpp | 24 +- .../heatTransfer/read_fileonly/PrintData.h | 10 +- .../read_fileonly/heatRead_adios1.cpp | 4 +- .../read_fileonly/heatRead_adios2.cpp | 13 +- examples/heatTransfer/write/HeatTransfer.cpp | 38 +- examples/heatTransfer/write/HeatTransfer.h | 3 +- examples/heatTransfer/write/IO.h | 14 +- examples/heatTransfer/write/IO_adios2.cpp | 18 +- examples/heatTransfer/write/IO_ascii.cpp | 11 +- examples/heatTransfer/write/IO_h5mixer.cpp | 27 +- examples/heatTransfer/write/IO_hdf5_a.cpp | 26 +- examples/heatTransfer/write/IO_ph5.cpp | 67 +- examples/heatTransfer/write/Settings.cpp | 7 +- .../helloBPAttributeWriter.cpp | 27 +- .../helloBPAttributeWriter_nompi.cpp | 13 +- examples/hello/bpFWriteCRead/CppReader.cpp | 6 +- examples/hello/bpFWriteCRead/CppWriter.cpp | 5 +- .../bpFlushWriter/helloBPFlushWriter.cpp | 11 +- .../helloBPFlushWriter_nompi.cpp | 4 +- examples/hello/bpReader/helloBPReader.cpp | 16 +- .../hello/bpReader/helloBPReaderHeatMap2D.cpp | 21 +- .../hello/bpReader/helloBPReaderHeatMap3D.cpp | 25 +- .../hello/bpReader/helloBPReader_nompi.cpp | 9 +- .../hello/bpTimeWriter/helloBPTimeWriter.cpp | 29 +- .../bpTimeWriter/helloBPTimeWriter_nompi.cpp | 7 +- .../hello/bpWriter/helloBPPutDeferred.cpp | 7 +- examples/hello/bpWriter/helloBPSZ.cpp | 17 +- examples/hello/bpWriter/helloBPSubStreams.cpp | 9 +- examples/hello/bpWriter/helloBPWriter.c | 5 +- examples/hello/bpWriter/helloBPWriter.cpp | 10 +- .../datamanReader/helloDataManReader.cpp | 10 +- .../datamanWriter/helloDataManWriter.cpp | 6 +- .../helloDataSpacesReader.cpp | 12 +- .../helloDataSpacesWriter.cpp | 25 +- examples/hello/hdf5Reader/helloHDF5Reader.cpp | 18 +- .../hdf5Reader/helloHDF5Reader_nompi.cpp | 6 +- examples/hello/hdf5Writer/helloHDF5Writer.cpp | 39 +- .../hdf5Writer/helloHDF5Writer_nompi.cpp | 7 +- .../helloInlineReaderWriter.cpp | 28 +- examples/hello/skeleton/HelloSkeletonArgs.cpp | 29 +- examples/hello/skeleton/HelloSkeletonArgs.h | 3 +- examples/hello/skeleton/HelloSkeletonPrint.h | 16 +- .../hello/skeleton/helloSkeletonReader.cpp | 21 +- .../hello/skeleton/helloSkeletonWriter.cpp | 14 +- examples/hello/sstReader/helloSstReader.cpp | 9 +- examples/hello/sstWriter/helloSstWriter.cpp | 21 +- examples/inlineMWE/inlineMWE.cpp | 6 +- examples/plugins/engine/ExampleReadPlugin.cpp | 48 +- examples/plugins/engine/ExampleReadPlugin.h | 18 +- examples/plugins/engine/ExampleReadPlugin.tcc | 57 +- .../plugins/engine/ExampleWritePlugin.cpp | 54 +- examples/plugins/engine/ExampleWritePlugin.h | 18 +- .../plugins/engine/ExampleWritePlugin.tcc | 8 +- .../engine/examplePluginEngine_write.cpp | 4 +- .../operator/examplePluginOperator_read.cpp | 22 +- .../operator/examplePluginOperator_write.cpp | 26 +- examples/query/test.cpp | 23 +- .../insituGlobalArraysReaderNxN.cpp | 65 +- .../insituGlobalArraysWriter.cpp | 21 +- flake8.cfg | 2 +- plugins/engines/ParaViewFidesEngine.cpp | 71 +- plugins/engines/ParaViewFidesEngine.h | 13 +- plugins/operators/EncryptionOperator.cpp | 54 +- plugins/operators/EncryptionOperator.h | 11 +- source/adios2/common/ADIOSMacros.h | 353 ++++---- source/adios2/common/ADIOSTypes.cpp | 33 +- source/adios2/core/ADIOS.cpp | 48 +- source/adios2/core/ADIOS.h | 14 +- source/adios2/core/Attribute.h | 6 +- source/adios2/core/Attribute.tcc | 32 +- source/adios2/core/AttributeBase.cpp | 6 +- source/adios2/core/AttributeBase.h | 10 +- source/adios2/core/CoreTypes.h | 5 +- source/adios2/core/Engine.cpp | 256 +++--- source/adios2/core/Engine.h | 128 ++- source/adios2/core/Engine.tcc | 90 +- source/adios2/core/Group.cpp | 31 +- source/adios2/core/Group.h | 12 +- source/adios2/core/Group.tcc | 14 +- source/adios2/core/IO.cpp | 234 ++--- source/adios2/core/IO.h | 80 +- source/adios2/core/IO.tcc | 124 +-- source/adios2/core/IOHDF5.cpp | 11 +- source/adios2/core/IOMPI.cpp | 23 +- source/adios2/core/Operator.cpp | 36 +- source/adios2/core/Operator.h | 35 +- source/adios2/core/Span.tcc | 14 +- source/adios2/core/Stream.cpp | 118 ++- source/adios2/core/Stream.h | 41 +- source/adios2/core/Stream.tcc | 83 +- source/adios2/core/Variable.cpp | 158 ++-- source/adios2/core/Variable.h | 13 +- source/adios2/core/Variable.tcc | 65 +- source/adios2/core/VariableBase.cpp | 280 +++--- source/adios2/core/VariableBase.h | 15 +- source/adios2/core/VariableStruct.cpp | 60 +- source/adios2/core/VariableStruct.h | 9 +- source/adios2/engine/bp3/BP3Reader.cpp | 161 ++-- 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38 +- source/adios2/helper/kokkos/adiosKokkos.h | 9 +- source/adios2/operator/OperatorFactory.cpp | 20 +- source/adios2/operator/OperatorFactory.h | 7 +- .../adios2/operator/callback/Signature1.cpp | 60 +- source/adios2/operator/callback/Signature1.h | 31 +- .../adios2/operator/callback/Signature2.cpp | 23 +- source/adios2/operator/callback/Signature2.h | 25 +- .../operator/compress/CompressBZIP2.cpp | 139 ++- .../adios2/operator/compress/CompressBZIP2.h | 11 +- .../operator/compress/CompressBlosc.cpp | 149 ++-- .../adios2/operator/compress/CompressBlosc.h | 24 +- .../operator/compress/CompressLibPressio.cpp | 152 ++-- .../operator/compress/CompressLibPressio.h | 11 +- .../operator/compress/CompressMGARD.cpp | 79 +- .../adios2/operator/compress/CompressMGARD.h | 11 +- .../operator/compress/CompressMGARDPlus.cpp | 38 +- .../operator/compress/CompressMGARDPlus.h | 11 +- .../adios2/operator/compress/CompressNull.cpp | 11 +- .../adios2/operator/compress/CompressNull.h | 8 +- 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source/adios2/toolkit/format/bp/BPBase.cpp | 200 ++--- source/adios2/toolkit/format/bp/BPBase.h | 50 +- source/adios2/toolkit/format/bp/BPBase.tcc | 210 ++--- .../adios2/toolkit/format/bp/BPSerializer.cpp | 465 +++++----- .../adios2/toolkit/format/bp/BPSerializer.h | 82 +- .../adios2/toolkit/format/bp/BPSerializer.tcc | 168 ++-- .../adios2/toolkit/format/bp/bp3/BP3Base.cpp | 54 +- source/adios2/toolkit/format/bp/bp3/BP3Base.h | 23 +- .../toolkit/format/bp/bp3/BP3Deserializer.cpp | 284 +++--- .../toolkit/format/bp/bp3/BP3Deserializer.h | 60 +- .../toolkit/format/bp/bp3/BP3Deserializer.tcc | 534 +++++------ .../toolkit/format/bp/bp3/BP3Serializer.cpp | 296 +++---- .../toolkit/format/bp/bp3/BP3Serializer.h | 101 +-- .../toolkit/format/bp/bp3/BP3Serializer.tcc | 252 +++--- .../adios2/toolkit/format/bp/bp4/BP4Base.cpp | 85 +- source/adios2/toolkit/format/bp/bp4/BP4Base.h | 37 +- .../toolkit/format/bp/bp4/BP4Deserializer.cpp | 286 +++--- .../toolkit/format/bp/bp4/BP4Deserializer.h | 67 +- 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source/adios2/toolkit/query/BlockIndex.h | 28 +- source/adios2/toolkit/query/Index.h | 3 +- source/adios2/toolkit/query/JsonWorker.cpp | 39 +- source/adios2/toolkit/query/Query.cpp | 42 +- source/adios2/toolkit/query/Query.h | 14 +- source/adios2/toolkit/query/Worker.cpp | 61 +- source/adios2/toolkit/query/Worker.h | 12 +- source/adios2/toolkit/query/XmlWorker.cpp | 112 +-- source/adios2/toolkit/shm/TokenChain.h | 17 +- source/adios2/toolkit/sst/cp/cp_common.c | 701 ++++++--------- source/adios2/toolkit/sst/cp/cp_internal.h | 110 +-- source/adios2/toolkit/sst/cp/cp_reader.c | 692 ++++++--------- source/adios2/toolkit/sst/cp/cp_writer.c | 836 +++++++----------- source/adios2/toolkit/sst/cp/ffs_marshal.c | 575 +++++------- source/adios2/toolkit/sst/cp/ffs_marshal.h | 10 +- source/adios2/toolkit/sst/cp/ffs_zfp.c | 26 +- source/adios2/toolkit/sst/dp/daos_dp.c | 254 ++---- source/adios2/toolkit/sst/dp/dp.c | 15 +- source/adios2/toolkit/sst/dp/dummy_dp.c | 212 ++--- source/adios2/toolkit/sst/dp/evpath_dp.c | 432 ++++----- source/adios2/toolkit/sst/dp/mpi_dp.c | 254 +++--- source/adios2/toolkit/sst/dp/rdma_dp.c | 615 +++++-------- source/adios2/toolkit/sst/dp/ucx_dp.c | 209 ++--- source/adios2/toolkit/sst/dp_interface.h | 135 ++- source/adios2/toolkit/sst/sst.h | 104 +-- source/adios2/toolkit/sst/sst_comm.cpp | 138 ++- source/adios2/toolkit/sst/sst_comm.h | 28 +- source/adios2/toolkit/sst/sst_data.h | 52 +- .../adios2/toolkit/sst/util/sst_conn_tool.c | 56 +- source/adios2/toolkit/transport/Transport.cpp | 43 +- source/adios2/toolkit/transport/Transport.h | 30 +- .../toolkit/transport/file/FileAWSSDK.cpp | 96 +- .../toolkit/transport/file/FileAWSSDK.h | 12 +- .../toolkit/transport/file/FileDaos.cpp | 138 ++- .../adios2/toolkit/transport/file/FileDaos.h | 4 +- .../toolkit/transport/file/FileFStream.cpp | 111 +-- .../toolkit/transport/file/FileFStream.h | 9 +- .../adios2/toolkit/transport/file/FileIME.cpp | 96 +- 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source/utils/adios_reorganize/Reorganize.h | 5 +- source/utils/bpls/bpls.cpp | 760 +++++++--------- source/utils/bpls/bpls.h | 54 +- .../TestBP4ReadOldCompressed.cpp | 8 +- testing/adios2/bindings/C/SmallTestData_c.h | 22 +- .../C/TestBPAvailableVariablesAttribites.cpp | 134 ++- .../C/TestBPWriteAggregateReadLocal.cpp | 102 +-- .../bindings/C/TestBPWriteReadMultiblock.cpp | 158 ++-- .../adios2/bindings/C/TestBPWriteTypes.cpp | 66 +- .../adios2/bindings/C/TestNullWriteRead.cpp | 18 +- .../fortran/TestF2C_BPReadFBlocks.cpp | 12 +- testing/adios2/engine/SmallTestData.h | 48 +- .../engine/bp/TestBPAppendAfterSteps.cpp | 41 +- testing/adios2/engine/bp/TestBPBufferSize.cpp | 51 +- .../adios2/engine/bp/TestBPChangingShape.cpp | 24 +- .../bp/TestBPChangingShapeWithinStep.cpp | 56 +- .../bp/TestBPFStreamWriteReadHighLevelAPI.cpp | 192 ++-- .../engine/bp/TestBPFortranToCppReader.cpp | 18 +- .../adios2/engine/bp/TestBPInquireDefine.cpp | 22 +- .../bp/TestBPInquireVariableException.cpp | 3 +- .../adios2/engine/bp/TestBPJoinedArray.cpp | 45 +- .../adios2/engine/bp/TestBPLargeMetadata.cpp | 14 +- .../engine/bp/TestBPParameterSelectSteps.cpp | 34 +- .../engine/bp/TestBPReadMultithreaded.cpp | 20 +- .../adios2/engine/bp/TestBPSelectionsCuda.cpp | 71 +- .../bp/TestBPSelectionsOnColumnMajorData.cpp | 287 +++--- .../bp/TestBPSelectionsOnRowMajorData.cpp | 283 +++--- .../engine/bp/TestBPStepsFileGlobalArray.cpp | 123 +-- .../engine/bp/TestBPStepsFileLocalArray.cpp | 81 +- .../bp/TestBPStepsInSituGlobalArray.cpp | 171 ++-- .../engine/bp/TestBPStepsInSituLocalArray.cpp | 108 +-- .../engine/bp/TestBPTimeAggregation.cpp | 80 +- .../engine/bp/TestBPWriteAggregateRead.cpp | 120 +-- .../engine/bp/TestBPWriteAppendReadADIOS2.cpp | 208 ++--- .../adios2/engine/bp/TestBPWriteFlushRead.cpp | 294 +++--- .../bp/TestBPWriteMemorySelectionRead.cpp | 272 +++--- .../engine/bp/TestBPWriteMultiblockRead.cpp | 155 ++-- testing/adios2/engine/bp/TestBPWriteNull.cpp | 136 +-- .../engine/bp/TestBPWriteProfilingJSON.cpp | 48 +- .../engine/bp/TestBPWriteReadADIOS2.cpp | 250 ++---- .../bp/TestBPWriteReadADIOS2fstream.cpp | 204 ++--- .../engine/bp/TestBPWriteReadADIOS2stdio.cpp | 204 ++--- .../bp/TestBPWriteReadAsStreamADIOS2.cpp | 149 ++-- .../TestBPWriteReadAsStreamADIOS2_Threads.cpp | 277 +++--- .../engine/bp/TestBPWriteReadAttributes.cpp | 288 +++--- .../bp/TestBPWriteReadAttributesMultirank.cpp | 30 +- .../engine/bp/TestBPWriteReadBlockInfo.cpp | 219 ++--- .../adios2/engine/bp/TestBPWriteReadCuda.cpp | 68 +- .../bp/TestBPWriteReadLocalVariables.cpp | 506 ++++------- .../bp/TestBPWriteReadLocalVariablesSel.cpp | 548 ++++-------- ...tBPWriteReadLocalVariablesSelHighLevel.cpp | 368 +++----- .../engine/bp/TestBPWriteReadMultiblock.cpp | 625 +++++-------- .../engine/bp/TestBPWriteReadVariableSpan.cpp | 324 +++---- .../engine/bp/TestBPWriteReadVector.cpp | 140 ++- .../bp/operations/TestBPWriteReadBZIP2.cpp | 133 +-- .../bp/operations/TestBPWriteReadBlosc.cpp | 186 ++-- .../bp/operations/TestBPWriteReadBlosc2.cpp | 231 ++--- .../TestBPWriteReadLocalVariables.cpp | 464 ++++------ .../bp/operations/TestBPWriteReadMGARD.cpp | 171 ++-- .../operations/TestBPWriteReadMGARDCuda.cpp | 44 +- .../operations/TestBPWriteReadMGARDPlus.cpp | 134 +-- .../bp/operations/TestBPWriteReadPNG.cpp | 126 ++- .../bp/operations/TestBPWriteReadSZ.cpp | 191 ++-- .../operations/TestBPWriteReadSzComplex.cpp | 135 ++- .../bp/operations/TestBPWriteReadZfp.cpp | 123 +-- .../operations/TestBPWriteReadZfpComplex.cpp | 138 +-- .../operations/TestBPWriteReadZfpConfig.cpp | 171 ++-- .../bp/operations/TestBPWriteReadZfpCuda.cpp | 17 +- .../TestBPWriteReadZfpHighLevelAPI.cpp | 205 ++--- .../TestBPWriteReadZfpRemoveOperations.cpp | 54 +- .../adios2/engine/common/TestEngineCommon.cpp | 60 +- .../adios2/engine/dataman/TestDataMan1D.cpp | 66 +- .../dataman/TestDataMan1DSuperLarge.cpp | 65 +- .../engine/dataman/TestDataMan2DMemSelect.cpp | 99 +-- .../adios2/engine/dataman/TestDataMan2DSz.cpp | 99 +-- .../engine/dataman/TestDataMan2DZfp.cpp | 99 +-- .../engine/dataman/TestDataMan3DMemSelect.cpp | 46 +- .../dataman/TestDataManReaderDoubleBuffer.cpp | 68 +- .../dataman/TestDataManReaderSingleBuffer.cpp | 68 +- .../engine/dataman/TestDataManReliable.cpp | 70 +- .../dataman/TestDataManWriterDoubleBuffer.cpp | 68 +- .../dataman/TestDataManWriterSingleBuffer.cpp | 65 +- testing/adios2/engine/hdf5/TestHDF5Append.cpp | 21 +- .../TestHDF5StreamWriteReadHighLevelAPI.cpp | 61 +- .../hdf5/TestHDF5WriteMemorySelectionRead.cpp | 262 ++---- .../engine/hdf5/TestHDF5WriteReadAsStream.cpp | 153 ++-- .../TestHDF5WriteReadAttributesADIOS2.cpp | 117 +-- .../engine/hdf5/TestNativeHDF5WriteRead.cpp | 380 +++----- .../engine/inline/TestInlineWriteRead.cpp | 153 ++-- testing/adios2/engine/mhs/TestMhsCommon.h | 70 +- .../adios2/engine/mhs/TestMhsMultiRank.cpp | 62 +- .../adios2/engine/mhs/TestMhsMultiReader.cpp | 62 +- .../adios2/engine/mhs/TestMhsSingleRank.cpp | 41 +- .../adios2/engine/null/TestNullWriteRead.cpp | 31 +- .../engine/nullcore/TestNullCoreWrite.cpp | 25 +- .../engine/skeleton/TestSkeletonReader.cpp | 32 +- .../engine/skeleton/TestSkeletonWriter.cpp | 9 +- .../adios2/engine/ssc/TestSsc3DMemSelect.cpp | 29 +- testing/adios2/engine/ssc/TestSsc7d.cpp | 92 +- testing/adios2/engine/ssc/TestSscBase.cpp | 108 +-- .../engine/ssc/TestSscBaseThreading.cpp | 105 +-- .../adios2/engine/ssc/TestSscBaseUnlocked.cpp | 101 +-- testing/adios2/engine/ssc/TestSscCommon.h | 58 +- .../engine/ssc/TestSscLockBeforeEndStep.cpp | 99 +-- .../ssc/TestSscMoreReadersThanWriters.cpp | 92 +- .../ssc/TestSscMoreWritersThanReaders.cpp | 89 +- .../adios2/engine/ssc/TestSscNoAttributes.cpp | 87 +- .../adios2/engine/ssc/TestSscNoSelection.cpp | 89 +- .../adios2/engine/ssc/TestSscOnlyOneStep.cpp | 99 +-- .../adios2/engine/ssc/TestSscOnlyTwoSteps.cpp | 99 +-- .../engine/ssc/TestSscReaderMultiblock.cpp | 120 +-- .../adios2/engine/ssc/TestSscSingleStep.cpp | 108 +-- testing/adios2/engine/ssc/TestSscString.cpp | 60 +- testing/adios2/engine/ssc/TestSscStruct.cpp | 139 +-- .../adios2/engine/ssc/TestSscSuperLarge.cpp | 108 +-- .../adios2/engine/ssc/TestSscUnbalanced.cpp | 90 +- .../adios2/engine/ssc/TestSscVaryingSteps.cpp | 132 +-- .../engine/ssc/TestSscWriterMultiblock.cpp | 90 +- testing/adios2/engine/ssc/TestSscXgc2Way.cpp | 42 +- testing/adios2/engine/ssc/TestSscXgc3Way.cpp | 75 +- .../engine/ssc/TestSscXgc3WayMatchedSteps.cpp | 75 +- .../adios2/engine/ssc/TestSscZeroBlock.cpp | 108 +-- .../adios2/engine/sst/TestSstParamFails.cpp | 36 +- .../adios2/engine/sst/TestSstWriterFails.cpp | 6 +- .../adios2/engine/staging-common/ParseArgs.h | 30 +- .../staging-common/TestCommonClient.cpp | 42 +- .../engine/staging-common/TestCommonRead.cpp | 57 +- .../staging-common/TestCommonReadAttrs.cpp | 29 +- .../staging-common/TestCommonReadLocal.cpp | 22 +- .../staging-common/TestCommonReadR64.cpp | 20 +- .../staging-common/TestCommonReadShared.cpp | 22 +- .../staging-common/TestCommonServer.cpp | 22 +- .../staging-common/TestCommonSpanRead.cpp | 18 +- .../staging-common/TestCommonSpanWrite.cpp | 8 +- .../engine/staging-common/TestCommonWrite.cpp | 42 +- .../staging-common/TestCommonWriteAttrs.cpp | 29 +- .../staging-common/TestCommonWriteLocal.cpp | 12 +- .../staging-common/TestCommonWriteModes.cpp | 26 +- .../staging-common/TestCommonWriteShared.cpp | 5 +- .../adios2/engine/staging-common/TestData.h | 154 ++-- .../adios2/engine/staging-common/TestData2.h | 58 +- .../staging-common/TestDefSyncWrite.cpp | 18 +- .../staging-common/TestDistributionRead.cpp | 14 +- .../staging-common/TestDistributionWrite.cpp | 3 +- .../engine/staging-common/TestLocalRead.cpp | 19 +- .../engine/staging-common/TestLocalWrite.cpp | 18 +- .../engine/staging-common/TestOnDemandMPI.cpp | 6 +- .../staging-common/TestOnDemandRead.cpp | 29 +- .../staging-common/TestOnDemandWrite.cpp | 35 +- .../engine/staging-common/TestReadJoined.cpp | 9 +- .../staging-common/TestShapeChangingWrite.cpp | 53 +- .../engine/staging-common/TestStagingMPMD.cpp | 60 +- .../engine/staging-common/TestStructRead.cpp | 110 +-- .../engine/staging-common/TestStructWrite.cpp | 41 +- .../engine/staging-common/TestThreads.cpp | 11 +- .../engine/staging-common/TestWriteJoined.cpp | 36 +- testing/adios2/helper/TestDivideBlock.cpp | 147 +-- testing/adios2/helper/TestHelperStrings.cpp | 41 +- testing/adios2/helper/TestMinMaxs.cpp | 236 ++--- .../hierarchy/TestBPHierarchicalReading.cpp | 26 +- .../interface/TestADIOSDefineAttribute.cpp | 251 ++---- .../interface/TestADIOSDefineVariable.cpp | 124 +-- .../adios2/interface/TestADIOSInterface.cpp | 38 +- .../interface/TestADIOSInterfaceWrite.cpp | 171 ++-- .../adios2/interface/TestADIOSSelection.cpp | 67 +- .../performance/manyvars/PerfManyVars.c | 106 ++- .../performance/manyvars/TestManyVars.cpp | 116 ++- .../performance/metadata/PerfMetaData.cpp | 72 +- .../adios2/performance/query/TestBPQuery.cpp | 15 +- testing/adios2/transports/TestFile.cpp | 104 ++- testing/adios2/xml/TestXMLConfig.cpp | 38 +- testing/adios2/xml/TestXMLConfigSerial.cpp | 26 +- testing/adios2/yaml/TestYAMLConfig.cpp | 25 +- testing/adios2/yaml/TestYAMLConfigSerial.cpp | 19 +- testing/h5vol/TestH5VolWriteReadBPFile.cpp | 232 ++--- .../testCatalystEngine.cpp | 6 +- testing/utils/SmallTestData_c.h | 28 +- .../changingshape/TestUtilsChangingShape.cpp | 16 +- testing/utils/cwriter/TestUtilsCWriter.c | 62 +- 680 files changed, 22102 insertions(+), 33822 deletions(-) diff --git a/.clang-format b/.clang-format index 3f817f7246..314723e0d9 100644 --- a/.clang-format +++ b/.clang-format @@ -10,7 +10,7 @@ CompactNamespaces: false ConstructorInitializerAllOnOneLineOrOnePerLine: false FixNamespaceComments: false Standard: Cpp11 -ColumnLimit: 80 +ColumnLimit: 100 AllowAllParametersOfDeclarationOnNextLine: true AlignEscapedNewlines: Right AlignAfterOpenBracket: Align diff --git a/bindings/C/adios2/c/adios2_c_adios.cpp b/bindings/C/adios2/c/adios2_c_adios.cpp index cf376e8770..bfcfe238a4 100644 --- a/bindings/C/adios2/c/adios2_c_adios.cpp +++ b/bindings/C/adios2/c/adios2_c_adios.cpp @@ -41,17 +41,15 @@ adios2::ArrayOrdering adios2_ToArrayOrdering(const adios2_arrayordering Corder) return order; } -adios2_adios *adios2_init_config_glue_serial(const char *config_file, - const char *host_language) +adios2_adios *adios2_init_config_glue_serial(const char *config_file, const char *host_language) { adios2_adios *adios = nullptr; try { adios2::helper::CheckForNullptr( - config_file, - "for config_file, in call to adios2_init or adios2_init_config"); - adios = reinterpret_cast( - new adios2::core::ADIOS(config_file, host_language)); + config_file, "for config_file, in call to adios2_init or adios2_init_config"); + adios = + reinterpret_cast(new adios2::core::ADIOS(config_file, host_language)); } catch (...) { @@ -60,10 +58,7 @@ adios2_adios *adios2_init_config_glue_serial(const char *config_file, return adios; } -adios2_adios *adios2_init_serial() -{ - return adios2_init_config_glue_serial("", "C"); -} +adios2_adios *adios2_init_serial() { return adios2_init_config_glue_serial("", "C"); } adios2_adios *adios2_init_config_serial(const char *config_file) { @@ -75,8 +70,7 @@ adios2_io *adios2_declare_io(adios2_adios *adios, const char *name) adios2_io *io = nullptr; try { - adios2::helper::CheckForNullptr( - adios, "for adios2_adios, in call to adios2_declare_io"); + adios2::helper::CheckForNullptr(adios, "for adios2_adios, in call to adios2_declare_io"); io = reinterpret_cast( &reinterpret_cast(adios)->DeclareIO(name)); } @@ -93,8 +87,7 @@ adios2_io *adios2_declare_io_order(adios2_adios *adios, const char *name, adios2_io *io = nullptr; try { - adios2::helper::CheckForNullptr( - adios, "for adios2_adios, in call to adios2_declare_io"); + adios2::helper::CheckForNullptr(adios, "for adios2_adios, in call to adios2_declare_io"); io = reinterpret_cast( &reinterpret_cast(adios)->DeclareIO( name, adios2_ToArrayOrdering(order))); @@ -111,8 +104,7 @@ adios2_io *adios2_at_io(adios2_adios *adios, const char *name) adios2_io *io = nullptr; try { - adios2::helper::CheckForNullptr( - adios, "for adios2_adios, in call to adios2_at_io"); + adios2::helper::CheckForNullptr(adios, "for adios2_adios, in call to adios2_at_io"); io = reinterpret_cast( &reinterpret_cast(adios)->AtIO(name)); } @@ -123,17 +115,15 @@ adios2_io *adios2_at_io(adios2_adios *adios, const char *name) return io; } -adios2_operator *adios2_define_operator(adios2_adios *adios, const char *name, - const char *type) +adios2_operator *adios2_define_operator(adios2_adios *adios, const char *name, const char *type) { adios2_operator *op = nullptr; try { - adios2::helper::CheckForNullptr( - adios, "for adios2_adios, in call to adios2_define_operator"); + adios2::helper::CheckForNullptr(adios, + "for adios2_adios, in call to adios2_define_operator"); op = reinterpret_cast( - &reinterpret_cast(adios)->DefineOperator( - name, type)); + &reinterpret_cast(adios)->DefineOperator(name, type)); } catch (...) { @@ -147,11 +137,10 @@ adios2_operator *adios2_inquire_operator(adios2_adios *adios, const char *name) adios2_operator *op = nullptr; try { - adios2::helper::CheckForNullptr( - adios, "for adios2_adios, in call to adios2_inquire_operator"); + adios2::helper::CheckForNullptr(adios, + "for adios2_adios, in call to adios2_inquire_operator"); op = reinterpret_cast( - reinterpret_cast(adios)->InquireOperator( - name)); + reinterpret_cast(adios)->InquireOperator(name)); } catch (...) { @@ -164,34 +153,28 @@ adios2_error adios2_flush_all(adios2_adios *adios) { try { - adios2::helper::CheckForNullptr( - adios, "for adios2_adios, in call to adios2_flush_all"); + adios2::helper::CheckForNullptr(adios, "for adios2_adios, in call to adios2_flush_all"); reinterpret_cast(adios)->FlushAll(); return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_flush_all")); + return static_cast(adios2::helper::ExceptionToError("adios2_flush_all")); } } -adios2_error adios2_remove_io(adios2_bool *result, adios2_adios *adios, - const char *name) +adios2_error adios2_remove_io(adios2_bool *result, adios2_adios *adios, const char *name) { try { - adios2::helper::CheckForNullptr( - adios, "for adios2_adios, in call to adios2_remove_io"); - const bool resultCpp = - reinterpret_cast(adios)->RemoveIO(name); + adios2::helper::CheckForNullptr(adios, "for adios2_adios, in call to adios2_remove_io"); + const bool resultCpp = reinterpret_cast(adios)->RemoveIO(name); *result = resultCpp ? adios2_true : adios2_false; return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_remove_io")); + return static_cast(adios2::helper::ExceptionToError("adios2_remove_io")); } } @@ -199,15 +182,14 @@ adios2_error adios2_remove_all_ios(adios2_adios *adios) { try { - adios2::helper::CheckForNullptr( - adios, "for adios2_adios, in call to adios2_remove_all_ios"); + adios2::helper::CheckForNullptr(adios, + "for adios2_adios, in call to adios2_remove_all_ios"); reinterpret_cast(adios)->RemoveAllIOs(); return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_remove_all_ios")); + return static_cast(adios2::helper::ExceptionToError("adios2_remove_all_ios")); } } @@ -215,15 +197,13 @@ adios2_error adios2_finalize(adios2_adios *adios) { try { - adios2::helper::CheckForNullptr( - adios, "for adios2_adios, in call to adios2_finalize"); + adios2::helper::CheckForNullptr(adios, "for adios2_adios, in call to adios2_finalize"); delete reinterpret_cast(adios); return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_finalize")); + return static_cast(adios2::helper::ExceptionToError("adios2_finalize")); } } @@ -234,8 +214,7 @@ adios2_error adios2_enter_computation_block(adios2_adios *adios) try { adios2::helper::CheckForNullptr( - adios, - "for adios2_adios, in call to adios2_enter_computation_block"); + adios, "for adios2_adios, in call to adios2_enter_computation_block"); reinterpret_cast(adios)->EnterComputationBlock(); return adios2_error_none; } @@ -253,8 +232,7 @@ adios2_error adios2_exit_computation_block(adios2_adios *adios) try { adios2::helper::CheckForNullptr( - adios, - "for adios2_adios, in call to adios2_exit_computation_block"); + adios, "for adios2_adios, in call to adios2_exit_computation_block"); reinterpret_cast(adios)->ExitComputationBlock(); return adios2_error_none; } diff --git a/bindings/C/adios2/c/adios2_c_adios.h b/bindings/C/adios2/c/adios2_c_adios.h index 02fc4671f5..b5044b0447 100644 --- a/bindings/C/adios2/c/adios2_c_adios.h +++ b/bindings/C/adios2/c/adios2_c_adios.h @@ -23,8 +23,7 @@ extern "C" { #if ADIOS2_USE_MPI #define adios2_init(comm) adios2_init_mpi(comm) -#define adios2_init_config(config_file, comm) \ - adios2_init_config_mpi(config_file, comm) +#define adios2_init_config(config_file, comm) adios2_init_config_mpi(config_file, comm) /** * Starting point for MPI apps. Creates an ADIOS handler. @@ -97,8 +96,7 @@ adios2_io *adios2_at_io(adios2_adios *adios, const char *name); * @param type supported ADIOS2 operator type: zfp, sz * @return success: handler, failure: NULL */ -adios2_operator *adios2_define_operator(adios2_adios *adios, const char *name, - const char *type); +adios2_operator *adios2_define_operator(adios2_adios *adios, const char *name, const char *type); /** * Retrieves a previously defined operator handler @@ -136,8 +134,7 @@ adios2_error adios2_finalize(adios2_adios *adios); * @param name input unique identifier for io to be removed * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_remove_io(adios2_bool *result, adios2_adios *adios, - const char *name); +adios2_error adios2_remove_io(adios2_bool *result, adios2_adios *adios, const char *name); /** * DANGER ZONE: removes all ios created with adios2_declare_io. diff --git a/bindings/C/adios2/c/adios2_c_adios_mpi.cpp b/bindings/C/adios2/c/adios2_c_adios_mpi.cpp index 7ae76381ce..ba3aa0889d 100644 --- a/bindings/C/adios2/c/adios2_c_adios_mpi.cpp +++ b/bindings/C/adios2/c/adios2_c_adios_mpi.cpp @@ -15,8 +15,7 @@ extern "C" { // to be called from other languages, hidden from the public apis -adios2_adios *adios2_init_config_glue_mpi(const char *config_file, - MPI_Comm comm, +adios2_adios *adios2_init_config_glue_mpi(const char *config_file, MPI_Comm comm, const char *host_language) { adios2_adios *adios = nullptr; @@ -24,10 +23,9 @@ adios2_adios *adios2_init_config_glue_mpi(const char *config_file, try { adios2::helper::CheckForNullptr( - config_file, - "for config_file, in call to adios2_init or adios2_init_config"); - adios = reinterpret_cast(new adios2::core::ADIOS( - config_file, adios2::helper::CommDupMPI(comm), host_language)); + config_file, "for config_file, in call to adios2_init or adios2_init_config"); + adios = reinterpret_cast( + new adios2::core::ADIOS(config_file, adios2::helper::CommDupMPI(comm), host_language)); } catch (...) { @@ -36,10 +34,7 @@ adios2_adios *adios2_init_config_glue_mpi(const char *config_file, return adios; } -adios2_adios *adios2_init_mpi(MPI_Comm comm) -{ - return adios2_init_config_glue_mpi("", comm, "C"); -} +adios2_adios *adios2_init_mpi(MPI_Comm comm) { return adios2_init_config_glue_mpi("", comm, "C"); } adios2_adios *adios2_init_config_mpi(const char *config_file, MPI_Comm comm) { diff --git a/bindings/C/adios2/c/adios2_c_attribute.cpp b/bindings/C/adios2/c/adios2_c_attribute.cpp index eb7a9867c3..c08b6629b9 100644 --- a/bindings/C/adios2/c/adios2_c_attribute.cpp +++ b/bindings/C/adios2/c/adios2_c_attribute.cpp @@ -18,13 +18,12 @@ extern "C" { #endif -adios2_error adios2_attribute_name(char *name, size_t *size, - const adios2_attribute *attribute) +adios2_error adios2_attribute_name(char *name, size_t *size, const adios2_attribute *attribute) { try { - adios2::helper::CheckForNullptr( - attribute, "for attribute, in call to adios2_attribute_name"); + adios2::helper::CheckForNullptr(attribute, + "for attribute, in call to adios2_attribute_name"); const adios2::core::AttributeBase *attributeBase = reinterpret_cast(attribute); @@ -33,18 +32,15 @@ adios2_error adios2_attribute_name(char *name, size_t *size, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_attribute_name")); + return static_cast(adios2::helper::ExceptionToError("adios2_attribute_name")); } } -adios2_error adios2_attribute_type(adios2_type *type, - const adios2_attribute *attribute) +adios2_error adios2_attribute_type(adios2_type *type, const adios2_attribute *attribute) { try { - adios2::helper::CheckForNullptr(attribute, - "in call to adios2_attribute_type"); + adios2::helper::CheckForNullptr(attribute, "in call to adios2_attribute_type"); const adios2::core::AttributeBase *attributeBase = reinterpret_cast(attribute); @@ -53,10 +49,10 @@ adios2_error adios2_attribute_type(adios2_type *type, { *type = adios2_type_string; } -#define make_case(T) \ - else if (type_s == adios2::helper::GetDataType::Type>()) \ - { \ - *type = T; \ +#define make_case(T) \ + else if (type_s == adios2::helper::GetDataType::Type>()) \ + { \ + *type = T; \ } ADIOS2_FOREACH_C_ATTRIBUTE_TYPE_1ARG(make_case) #undef make_case @@ -68,8 +64,7 @@ adios2_error adios2_attribute_type(adios2_type *type, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_attribute_type")); + return static_cast(adios2::helper::ExceptionToError("adios2_attribute_type")); } } @@ -78,12 +73,10 @@ adios2_error adios2_attribute_type_string(char *type, size_t *size, { try { + adios2::helper::CheckForNullptr(attribute, "for const adios2_attribute, in call to " + "adios2_attribute_type_string"); adios2::helper::CheckForNullptr( - attribute, "for const adios2_attribute, in call to " - "adios2_attribute_type_string"); - adios2::helper::CheckForNullptr( - size, - "for size_t* length, in call to adios2_attribute_type_string"); + size, "for size_t* length, in call to adios2_attribute_type_string"); const adios2::core::AttributeBase *attributeBase = reinterpret_cast(attribute); @@ -96,13 +89,11 @@ adios2_error adios2_attribute_type_string(char *type, size_t *size, } } -adios2_error adios2_attribute_is_value(adios2_bool *result, - const adios2_attribute *attribute) +adios2_error adios2_attribute_is_value(adios2_bool *result, const adios2_attribute *attribute) { try { - adios2::helper::CheckForNullptr(attribute, - "in call to adios2_attribute_is_value"); + adios2::helper::CheckForNullptr(attribute, "in call to adios2_attribute_is_value"); const adios2::core::AttributeBase *attributeBase = reinterpret_cast(attribute); @@ -116,13 +107,11 @@ adios2_error adios2_attribute_is_value(adios2_bool *result, } } -adios2_error adios2_attribute_size(size_t *size, - const adios2_attribute *attribute) +adios2_error adios2_attribute_size(size_t *size, const adios2_attribute *attribute) { try { - adios2::helper::CheckForNullptr(attribute, - "in call to adios2_attribute_size"); + adios2::helper::CheckForNullptr(attribute, "in call to adios2_attribute_size"); const adios2::core::AttributeBase *attributeBase = reinterpret_cast(attribute); @@ -131,20 +120,16 @@ adios2_error adios2_attribute_size(size_t *size, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_attribute_size")); + return static_cast(adios2::helper::ExceptionToError("adios2_attribute_size")); } } -adios2_error adios2_attribute_data(void *data, size_t *size, - const adios2_attribute *attribute) +adios2_error adios2_attribute_data(void *data, size_t *size, const adios2_attribute *attribute) { try { - adios2::helper::CheckForNullptr(attribute, - "in call to adios2_attribute_data"); - adios2::helper::CheckForNullptr( - data, "for data, in call to adios2_attribute_data"); + adios2::helper::CheckForNullptr(attribute, "in call to adios2_attribute_data"); + adios2::helper::CheckForNullptr(data, "for data, in call to adios2_attribute_data"); const adios2::core::AttributeBase *attributeBase = reinterpret_cast(attribute); @@ -158,13 +143,11 @@ adios2_error adios2_attribute_data(void *data, size_t *size, else if (type == adios2::helper::GetDataType()) { const adios2::core::Attribute *attributeCpp = - dynamic_cast *>( - attributeBase); + dynamic_cast *>(attributeBase); if (attributeCpp->m_IsSingleValue) { char *dataT = reinterpret_cast(data); - attributeCpp->m_DataSingleValue.copy( - dataT, attributeCpp->m_DataSingleValue.size()); + attributeCpp->m_DataSingleValue.copy(dataT, attributeCpp->m_DataSingleValue.size()); dataT[attributeCpp->m_DataSingleValue.size()] = '\0'; *size = 1; } @@ -175,40 +158,37 @@ adios2_error adios2_attribute_data(void *data, size_t *size, for (size_t e = 0; e < *size; ++e) { - attributeCpp->m_DataArray[e].copy( - dataT[e], attributeCpp->m_DataArray[e].size()); + attributeCpp->m_DataArray[e].copy(dataT[e], + attributeCpp->m_DataArray[e].size()); dataT[e][attributeCpp->m_DataArray[e].size()] = '\0'; } } } -#define declare_template_instantiation(T) \ - else if (type == adios2::helper::GetDataType()) \ - { \ - const adios2::core::Attribute *attributeCpp = \ - dynamic_cast *>(attributeBase); \ - T *dataT = reinterpret_cast(data); \ - if (attributeCpp->m_IsSingleValue) \ - { \ - *dataT = attributeCpp->m_DataSingleValue; \ - *size = 1; \ - } \ - else \ - { \ - std::copy(attributeCpp->m_DataArray.begin(), \ - attributeCpp->m_DataArray.end(), dataT); \ - *size = attributeCpp->m_Elements; \ - } \ +#define declare_template_instantiation(T) \ + else if (type == adios2::helper::GetDataType()) \ + { \ + const adios2::core::Attribute *attributeCpp = \ + dynamic_cast *>(attributeBase); \ + T *dataT = reinterpret_cast(data); \ + if (attributeCpp->m_IsSingleValue) \ + { \ + *dataT = attributeCpp->m_DataSingleValue; \ + *size = 1; \ + } \ + else \ + { \ + std::copy(attributeCpp->m_DataArray.begin(), attributeCpp->m_DataArray.end(), dataT); \ + *size = attributeCpp->m_Elements; \ + } \ } - ADIOS2_FOREACH_ATTRIBUTE_PRIMITIVE_STDTYPE_1ARG( - declare_template_instantiation) + ADIOS2_FOREACH_ATTRIBUTE_PRIMITIVE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_attribute_data")); + return static_cast(adios2::helper::ExceptionToError("adios2_attribute_data")); } } diff --git a/bindings/C/adios2/c/adios2_c_attribute.h b/bindings/C/adios2/c/adios2_c_attribute.h index 2209383f48..58435c3488 100644 --- a/bindings/C/adios2/c/adios2_c_attribute.h +++ b/bindings/C/adios2/c/adios2_c_attribute.h @@ -28,8 +28,7 @@ extern "C" { * @param attribute handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_attribute_name(char *name, size_t *size, - const adios2_attribute *attribute); +adios2_error adios2_attribute_name(char *name, size_t *size, const adios2_attribute *attribute); /** * Retrieve attribute type @@ -37,8 +36,7 @@ adios2_error adios2_attribute_name(char *name, size_t *size, * @param attribute handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_attribute_type(adios2_type *type, - const adios2_attribute *attribute); +adios2_error adios2_attribute_type(adios2_type *type, const adios2_attribute *attribute); /** * Retrieve attribute type in string form "char", "unsigned long", etc. @@ -60,8 +58,7 @@ adios2_error adios2_attribute_type_string(char *type, size_t *size, * @param attribute handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_attribute_is_value(adios2_bool *result, - const adios2_attribute *attribute); +adios2_error adios2_attribute_is_value(adios2_bool *result, const adios2_attribute *attribute); /** * Returns the number of elements (as in C++ STL size() function) if attribute @@ -70,8 +67,7 @@ adios2_error adios2_attribute_is_value(adios2_bool *result, * @param attribute handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_attribute_size(size_t *size, - const adios2_attribute *attribute); +adios2_error adios2_attribute_size(size_t *size, const adios2_attribute *attribute); /** * Retrieve attribute data pointer (read-only) @@ -80,8 +76,7 @@ adios2_error adios2_attribute_size(size_t *size, * @param attribute handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_attribute_data(void *data, size_t *size, - const adios2_attribute *attribute); +adios2_error adios2_attribute_data(void *data, size_t *size, const adios2_attribute *attribute); #ifdef __cplusplus } // end extern C diff --git a/bindings/C/adios2/c/adios2_c_engine.cpp b/bindings/C/adios2/c/adios2_c_engine.cpp index c933c96a41..1707552972 100644 --- a/bindings/C/adios2/c/adios2_c_engine.cpp +++ b/bindings/C/adios2/c/adios2_c_engine.cpp @@ -41,8 +41,7 @@ adios2::Mode adios2_ToMode(const adios2_mode mode, const std::string &hint) modeCpp = adios2::Mode::Sync; break; default: - throw std::invalid_argument("ERROR: invalid adios2_mode, " + hint + - "\n"); + throw std::invalid_argument("ERROR: invalid adios2_mode, " + hint + "\n"); } return modeCpp; } @@ -71,14 +70,12 @@ adios2_mode adios2_fromMode(const adios2::Mode mode, const std::string &hint) modeC = adios2_mode_sync; break; default: - throw std::invalid_argument("ERROR: invalid adios2::Mode, " + hint + - "\n"); + throw std::invalid_argument("ERROR: invalid adios2::Mode, " + hint + "\n"); } return modeC; } -adios2::StepMode ToStepMode(const adios2_step_mode mode, - const std::string &hint) +adios2::StepMode ToStepMode(const adios2_step_mode mode, const std::string &hint) { adios2::StepMode stepModeCpp = adios2::StepMode::Read; switch (mode) @@ -94,14 +91,12 @@ adios2::StepMode ToStepMode(const adios2_step_mode mode, break; default: - throw std::invalid_argument("ERROR: invalid adios2_step_mode, " + hint + - "\n"); + throw std::invalid_argument("ERROR: invalid adios2_step_mode, " + hint + "\n"); } return stepModeCpp; } -adios2_step_status ToStepStatus(const adios2::StepStatus statusCpp, - const std::string &hint) +adios2_step_status ToStepStatus(const adios2::StepStatus statusCpp, const std::string &hint) { adios2_step_status status = adios2_step_status_other_error; @@ -121,51 +116,45 @@ adios2_step_status ToStepStatus(const adios2::StepStatus statusCpp, break; default: - throw std::invalid_argument("ERROR: invalid adios2_step_status, " + - hint + "\n"); + throw std::invalid_argument("ERROR: invalid adios2_step_status, " + hint + "\n"); } return status; } } // end anonymous namespace -adios2_error adios2_engine_name(char *name, size_t *size, - const adios2_engine *engine) +adios2_error adios2_engine_name(char *name, size_t *size, const adios2_engine *engine) { try { - adios2::helper::CheckForNullptr( - engine, "for const adios2_engine, in call to adios2_engine_name"); + adios2::helper::CheckForNullptr(engine, + "for const adios2_engine, in call to adios2_engine_name"); const adios2::core::Engine *engineCpp = reinterpret_cast(engine); - adios2::helper::CheckForNullptr( - size, "for size_t* size, in call to adios2_engine_name"); + adios2::helper::CheckForNullptr(size, "for size_t* size, in call to adios2_engine_name"); return String2CAPI(engineCpp->m_Name, name, size); } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_engine_name")); + return static_cast(adios2::helper::ExceptionToError("adios2_engine_name")); } } -adios2_error adios2_engine_get_type(char *type, size_t *size, - const adios2_engine *engine) +adios2_error adios2_engine_get_type(char *type, size_t *size, const adios2_engine *engine) { try { adios2::helper::CheckForNullptr( - engine, - "for const adios2_engine, in call to adios2_engine_get_type"); + engine, "for const adios2_engine, in call to adios2_engine_get_type"); const adios2::core::Engine *engineCpp = reinterpret_cast(engine); - adios2::helper::CheckForNullptr( - size, "for size_t* size, in call to adios2_engine_get_type"); + adios2::helper::CheckForNullptr(size, + "for size_t* size, in call to adios2_engine_get_type"); return String2CAPI(engineCpp->m_EngineType, type, size); } @@ -176,14 +165,12 @@ adios2_error adios2_engine_get_type(char *type, size_t *size, } } -adios2_error adios2_engine_openmode(adios2_mode *mode, - const adios2_engine *engine) +adios2_error adios2_engine_openmode(adios2_mode *mode, const adios2_engine *engine) { try { adios2::helper::CheckForNullptr( - engine, - "for const adios2_engine, in call to adios2_engine_openmode"); + engine, "for const adios2_engine, in call to adios2_engine_openmode"); const adios2::core::Engine *engineCpp = reinterpret_cast(engine); @@ -199,21 +186,17 @@ adios2_error adios2_engine_openmode(adios2_mode *mode, } } -adios2_error adios2_begin_step(adios2_engine *engine, - const adios2_step_mode mode, - const float timeout_seconds, - adios2_step_status *status) +adios2_error adios2_begin_step(adios2_engine *engine, const adios2_step_mode mode, + const float timeout_seconds, adios2_step_status *status) { try { - adios2::helper::CheckForNullptr( - engine, "for adios2_engine, in call to adios2_begin_step"); + adios2::helper::CheckForNullptr(engine, "for adios2_engine, in call to adios2_begin_step"); - adios2::core::Engine *engineCpp = - reinterpret_cast(engine); + adios2::core::Engine *engineCpp = reinterpret_cast(engine); - const adios2::StepStatus statusCpp = engineCpp->BeginStep( - ToStepMode(mode, "in call to adios2_begin_step"), timeout_seconds); + const adios2::StepStatus statusCpp = + engineCpp->BeginStep(ToStepMode(mode, "in call to adios2_begin_step"), timeout_seconds); *status = ToStepStatus(statusCpp, "in call to adios2_begin_step"); return adios2_error_none; @@ -221,18 +204,16 @@ adios2_error adios2_begin_step(adios2_engine *engine, catch (...) { *status = adios2_step_status_other_error; - return static_cast( - adios2::helper::ExceptionToError("adios2_begin_step")); + return static_cast(adios2::helper::ExceptionToError("adios2_begin_step")); } } -adios2_error adios2_between_step_pairs(size_t *between_step_pairs, - const adios2_engine *engine) +adios2_error adios2_between_step_pairs(size_t *between_step_pairs, const adios2_engine *engine) { try { - adios2::helper::CheckForNullptr( - engine, "for adios2_engine, in call to adios2_between_step_pairs"); + adios2::helper::CheckForNullptr(engine, + "for adios2_engine, in call to adios2_between_step_pairs"); const adios2::core::Engine *engineCpp = reinterpret_cast(engine); @@ -247,13 +228,12 @@ adios2_error adios2_between_step_pairs(size_t *between_step_pairs, } } -adios2_error adios2_current_step(size_t *current_step, - const adios2_engine *engine) +adios2_error adios2_current_step(size_t *current_step, const adios2_engine *engine) { try { - adios2::helper::CheckForNullptr( - engine, "for adios2_engine, in call to adios2_current_step"); + adios2::helper::CheckForNullptr(engine, + "for adios2_engine, in call to adios2_current_step"); const adios2::core::Engine *engineCpp = reinterpret_cast(engine); @@ -263,8 +243,7 @@ adios2_error adios2_current_step(size_t *current_step, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_current_step")); + return static_cast(adios2::helper::ExceptionToError("adios2_current_step")); } } @@ -272,8 +251,7 @@ adios2_error adios2_steps(size_t *steps, const adios2_engine *engine) { try { - adios2::helper::CheckForNullptr( - engine, "for adios2_engine, in call to adios2_steps"); + adios2::helper::CheckForNullptr(engine, "for adios2_engine, in call to adios2_steps"); const adios2::core::Engine *engineCpp = reinterpret_cast(engine); @@ -283,32 +261,28 @@ adios2_error adios2_steps(size_t *steps, const adios2_engine *engine) } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_steps")); + return static_cast(adios2::helper::ExceptionToError("adios2_steps")); } } -adios2_error adios2_put(adios2_engine *engine, adios2_variable *variable, - const void *data, const adios2_mode mode) +adios2_error adios2_put(adios2_engine *engine, adios2_variable *variable, const void *data, + const adios2_mode mode) { try { - adios2::helper::CheckForNullptr( - engine, "for adios2_engine, in call to adios2_put"); + adios2::helper::CheckForNullptr(engine, "for adios2_engine, in call to adios2_put"); - adios2::core::Engine *engineCpp = - reinterpret_cast(engine); + adios2::core::Engine *engineCpp = reinterpret_cast(engine); - adios2::helper::CheckForNullptr( - variable, "for adios2_variable, in call to adios2_put"); + adios2::helper::CheckForNullptr(variable, "for adios2_variable, in call to adios2_put"); adios2::core::VariableBase *variableBase = reinterpret_cast(variable); const adios2::DataType type(variableBase->m_Type); - const adios2::Mode modeCpp = adios2_ToMode( - mode, "only adios2_mode_deferred or adios2_mode_sync are valid, " - "in call to adios2_put"); + const adios2::Mode modeCpp = + adios2_ToMode(mode, "only adios2_mode_deferred or adios2_mode_sync are valid, " + "in call to adios2_put"); if (type == adios2::DataType::Struct) { @@ -317,16 +291,14 @@ adios2_error adios2_put(adios2_engine *engine, adios2_variable *variable, else if (type == adios2::helper::GetDataType()) { const std::string dataStr(reinterpret_cast(data)); - engineCpp->Put(*dynamic_cast *>( - variableBase), + engineCpp->Put(*dynamic_cast *>(variableBase), dataStr, modeCpp); } -#define declare_template_instantiation(T) \ - else if (type == adios2::helper::GetDataType()) \ - { \ - engineCpp->Put( \ - *dynamic_cast *>(variableBase), \ - reinterpret_cast(data), modeCpp); \ +#define declare_template_instantiation(T) \ + else if (type == adios2::helper::GetDataType()) \ + { \ + engineCpp->Put(*dynamic_cast *>(variableBase), \ + reinterpret_cast(data), modeCpp); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -335,33 +307,27 @@ adios2_error adios2_put(adios2_engine *engine, adios2_variable *variable, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_put")); + return static_cast(adios2::helper::ExceptionToError("adios2_put")); } } -adios2_error adios2_put_by_name(adios2_engine *engine, - const char *variable_name, const void *data, +adios2_error adios2_put_by_name(adios2_engine *engine, const char *variable_name, const void *data, const adios2_mode mode) { try { - adios2::helper::CheckForNullptr( - engine, "for adios2_engine, in call to adios2_put_by_name"); + adios2::helper::CheckForNullptr(engine, "for adios2_engine, in call to adios2_put_by_name"); - adios2::core::Engine *engineCpp = - reinterpret_cast(engine); + adios2::core::Engine *engineCpp = reinterpret_cast(engine); adios2::helper::CheckForNullptr( - variable_name, - "for const char* variable_name, in call to adios2_put_by_name"); + variable_name, "for const char* variable_name, in call to adios2_put_by_name"); - const adios2::Mode modeCpp = adios2_ToMode( - mode, "only adios2_mode_deferred or adios2_mode_sync are valid, " - "in call to adios2_put_by_name"); + const adios2::Mode modeCpp = + adios2_ToMode(mode, "only adios2_mode_deferred or adios2_mode_sync are valid, " + "in call to adios2_put_by_name"); - const adios2::DataType type( - engineCpp->m_IO.InquireVariableType(variable_name)); + const adios2::DataType type(engineCpp->m_IO.InquireVariableType(variable_name)); if (type == adios2::DataType::Struct) { @@ -372,11 +338,10 @@ adios2_error adios2_put_by_name(adios2_engine *engine, const std::string dataStr(reinterpret_cast(data)); engineCpp->Put(variable_name, dataStr, modeCpp); } -#define declare_template_instantiation(T) \ - else if (type == adios2::helper::GetDataType()) \ - { \ - engineCpp->Put(variable_name, reinterpret_cast(data), \ - modeCpp); \ +#define declare_template_instantiation(T) \ + else if (type == adios2::helper::GetDataType()) \ + { \ + engineCpp->Put(variable_name, reinterpret_cast(data), modeCpp); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -384,8 +349,7 @@ adios2_error adios2_put_by_name(adios2_engine *engine, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_put_by_name")); + return static_cast(adios2::helper::ExceptionToError("adios2_put_by_name")); } } @@ -393,19 +357,17 @@ adios2_error adios2_perform_puts(adios2_engine *engine) { try { - adios2::helper::CheckForNullptr( - engine, "for adios2_engine, in call to adios2_perform_puts"); + adios2::helper::CheckForNullptr(engine, + "for adios2_engine, in call to adios2_perform_puts"); - adios2::core::Engine *engineCpp = - reinterpret_cast(engine); + adios2::core::Engine *engineCpp = reinterpret_cast(engine); engineCpp->PerformPuts(); return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_perform_puts")); + return static_cast(adios2::helper::ExceptionToError("adios2_perform_puts")); } } @@ -413,11 +375,10 @@ adios2_error adios2_perform_data_write(adios2_engine *engine) { try { - adios2::helper::CheckForNullptr( - engine, "for adios2_engine, in call to adios2_perform_data_write"); + adios2::helper::CheckForNullptr(engine, + "for adios2_engine, in call to adios2_perform_data_write"); - adios2::core::Engine *engineCpp = - reinterpret_cast(engine); + adios2::core::Engine *engineCpp = reinterpret_cast(engine); engineCpp->PerformDataWrite(); return adios2_error_none; @@ -429,20 +390,17 @@ adios2_error adios2_perform_data_write(adios2_engine *engine) } } -adios2_error adios2_get(adios2_engine *engine, adios2_variable *variable, - void *values, const adios2_mode mode) +adios2_error adios2_get(adios2_engine *engine, adios2_variable *variable, void *values, + const adios2_mode mode) { try { - adios2::helper::CheckForNullptr( - engine, "for adios2_engine, in call to adios2_get"); + adios2::helper::CheckForNullptr(engine, "for adios2_engine, in call to adios2_get"); - adios2::core::Engine *engineCpp = - reinterpret_cast(engine); + adios2::core::Engine *engineCpp = reinterpret_cast(engine); - adios2::helper::CheckForNullptr(variable, - "for adios2_variable, in call " - "to adios2_get"); + adios2::helper::CheckForNullptr(variable, "for adios2_variable, in call " + "to adios2_get"); adios2::core::VariableBase *variableBase = reinterpret_cast(variable); @@ -456,20 +414,18 @@ adios2_error adios2_get(adios2_engine *engine, adios2_variable *variable, else if (type == adios2::helper::GetDataType()) { std::string dataStr; - engineCpp->Get(*dynamic_cast *>( - variableBase), + engineCpp->Get(*dynamic_cast *>(variableBase), dataStr); dataStr.copy(reinterpret_cast(values), dataStr.size()); } -#define declare_template_instantiation(T) \ - else if (type == adios2::helper::GetDataType()) \ - { \ - const adios2::Mode modeCpp = adios2_ToMode( \ - mode, "only adios2_mode_deferred or adios2_mode_sync are valid, " \ - "in call to adios2_get"); \ - engineCpp->Get( \ - *dynamic_cast *>(variableBase), \ - reinterpret_cast(values), modeCpp); \ +#define declare_template_instantiation(T) \ + else if (type == adios2::helper::GetDataType()) \ + { \ + const adios2::Mode modeCpp = \ + adios2_ToMode(mode, "only adios2_mode_deferred or adios2_mode_sync are valid, " \ + "in call to adios2_get"); \ + engineCpp->Get(*dynamic_cast *>(variableBase), \ + reinterpret_cast(values), modeCpp); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -477,32 +433,26 @@ adios2_error adios2_get(adios2_engine *engine, adios2_variable *variable, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_get")); + return static_cast(adios2::helper::ExceptionToError("adios2_get")); } } -adios2_error adios2_get_by_name(adios2_engine *engine, - const char *variable_name, void *data, +adios2_error adios2_get_by_name(adios2_engine *engine, const char *variable_name, void *data, const adios2_mode mode) { try { - adios2::helper::CheckForNullptr( - engine, "for adios2_engine, in call to adios2_get_by_name"); + adios2::helper::CheckForNullptr(engine, "for adios2_engine, in call to adios2_get_by_name"); - adios2::core::Engine *engineCpp = - reinterpret_cast(engine); + adios2::core::Engine *engineCpp = reinterpret_cast(engine); - adios2::helper::CheckForNullptr( - variable_name, "for const char* variable_name, in call to " - "adios2_get_by_name"); + adios2::helper::CheckForNullptr(variable_name, "for const char* variable_name, in call to " + "adios2_get_by_name"); - const adios2::Mode modeCpp = adios2_ToMode( - mode, "only adios2_mode_deferred or adios2_mode_sync are valid, " - "in call to adios2_get_by_name"); - const adios2::DataType type( - engineCpp->m_IO.InquireVariableType(variable_name)); + const adios2::Mode modeCpp = + adios2_ToMode(mode, "only adios2_mode_deferred or adios2_mode_sync are valid, " + "in call to adios2_get_by_name"); + const adios2::DataType type(engineCpp->m_IO.InquireVariableType(variable_name)); if (type == adios2::DataType::Struct) { @@ -514,10 +464,10 @@ adios2_error adios2_get_by_name(adios2_engine *engine, engineCpp->Get(variable_name, dataStr); dataStr.copy(reinterpret_cast(data), dataStr.size()); } -#define declare_template_instantiation(T) \ - else if (type == adios2::helper::GetDataType()) \ - { \ - engineCpp->Get(variable_name, reinterpret_cast(data), modeCpp); \ +#define declare_template_instantiation(T) \ + else if (type == adios2::helper::GetDataType()) \ + { \ + engineCpp->Get(variable_name, reinterpret_cast(data), modeCpp); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -525,8 +475,7 @@ adios2_error adios2_get_by_name(adios2_engine *engine, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_get_by_name")); + return static_cast(adios2::helper::ExceptionToError("adios2_get_by_name")); } } @@ -534,19 +483,17 @@ adios2_error adios2_perform_gets(adios2_engine *engine) { try { - adios2::helper::CheckForNullptr( - engine, "for adios2_engine, in call to adios2_perform_gets"); + adios2::helper::CheckForNullptr(engine, + "for adios2_engine, in call to adios2_perform_gets"); - adios2::core::Engine *engineCpp = - reinterpret_cast(engine); + adios2::core::Engine *engineCpp = reinterpret_cast(engine); engineCpp->PerformGets(); return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_perform_gets")); + return static_cast(adios2::helper::ExceptionToError("adios2_perform_gets")); } } @@ -554,37 +501,29 @@ adios2_error adios2_end_step(adios2_engine *engine) { try { - adios2::helper::CheckForNullptr( - engine, "for adios2_engine, in call to adios2_end_step"); + adios2::helper::CheckForNullptr(engine, "for adios2_engine, in call to adios2_end_step"); - adios2::core::Engine *engineCpp = - reinterpret_cast(engine); + adios2::core::Engine *engineCpp = reinterpret_cast(engine); engineCpp->EndStep(); return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_end_step")); + return static_cast(adios2::helper::ExceptionToError("adios2_end_step")); } } -adios2_error adios2_flush(adios2_engine *engine) -{ - return adios2_flush_by_index(engine, -1); -} +adios2_error adios2_flush(adios2_engine *engine) { return adios2_flush_by_index(engine, -1); } -adios2_error adios2_flush_by_index(adios2_engine *engine, - const int transport_index) +adios2_error adios2_flush_by_index(adios2_engine *engine, const int transport_index) { try { adios2::helper::CheckForNullptr(engine, "for adios2_engine, in call to " "adios2_flush or " "adios2_flush_by_index"); - adios2::core::Engine *engineCpp = - reinterpret_cast(engine); + adios2::core::Engine *engineCpp = reinterpret_cast(engine); engineCpp->Flush(transport_index); @@ -592,31 +531,25 @@ adios2_error adios2_flush_by_index(adios2_engine *engine, } catch (...) { - return static_cast(adios2::helper::ExceptionToError( - "adios2_flush or adios2_flush_by_index")); + return static_cast( + adios2::helper::ExceptionToError("adios2_flush or adios2_flush_by_index")); } } -adios2_error adios2_close(adios2_engine *engine) -{ - return adios2_close_by_index(engine, -1); -} +adios2_error adios2_close(adios2_engine *engine) { return adios2_close_by_index(engine, -1); } adios2_error adios2_lock_writer_definitions(adios2_engine *engine) { try { adios2::helper::CheckForNullptr( - engine, - "for adios2_engine, in call to adios2_lock_writer_definitions"); - reinterpret_cast(engine) - ->LockWriterDefinitions(); + engine, "for adios2_engine, in call to adios2_lock_writer_definitions"); + reinterpret_cast(engine)->LockWriterDefinitions(); return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_engine_type")); + return static_cast(adios2::helper::ExceptionToError("adios2_engine_type")); } } @@ -625,21 +558,17 @@ adios2_error adios2_lock_reader_selections(adios2_engine *engine) try { adios2::helper::CheckForNullptr( - engine, - "for adios2_engine, in call to adios2_lock_reader_selections"); - reinterpret_cast(engine) - ->LockReaderSelections(); + engine, "for adios2_engine, in call to adios2_lock_reader_selections"); + reinterpret_cast(engine)->LockReaderSelections(); return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_engine_type")); + return static_cast(adios2::helper::ExceptionToError("adios2_engine_type")); } } -adios2_varinfo *adios2_inquire_blockinfo(adios2_engine *engine, - adios2_variable *variable, +adios2_varinfo *adios2_inquire_blockinfo(adios2_engine *engine, adios2_variable *variable, const size_t step) { auto lf_CopyDims = [](const std::vector &dims) -> size_t * { @@ -657,31 +586,28 @@ adios2_varinfo *adios2_inquire_blockinfo(adios2_engine *engine, try { - adios2::helper::CheckForNullptr( - engine, "for adios2_engine, in call to adios2_inquire_blockinfo"); + adios2::helper::CheckForNullptr(engine, + "for adios2_engine, in call to adios2_inquire_blockinfo"); - adios2::core::Engine *engineCpp = - reinterpret_cast(engine); + adios2::core::Engine *engineCpp = reinterpret_cast(engine); - adios2::helper::CheckForNullptr(variable, - "for adios2_variable, in call " - "to adios2_get"); + adios2::helper::CheckForNullptr(variable, "for adios2_variable, in call " + "to adios2_get"); adios2::core::VariableBase *variableBase = reinterpret_cast(variable); const adios2::DataType type(variableBase->m_Type); - const auto minBlocksInfo = - engineCpp->MinBlocksInfo(*variableBase, step); + const auto minBlocksInfo = engineCpp->MinBlocksInfo(*variableBase, step); if (minBlocksInfo) { varinfo = (adios2_varinfo *)malloc(sizeof(adios2_varinfo)); varinfo->nblocks = minBlocksInfo->BlocksInfo.size(); varinfo->Shape = NULL; - varinfo->BlocksInfo = (adios2_blockinfo *)malloc( - varinfo->nblocks * sizeof(adios2_blockinfo)); + varinfo->BlocksInfo = + (adios2_blockinfo *)malloc(varinfo->nblocks * sizeof(adios2_blockinfo)); auto *b = varinfo->BlocksInfo; varinfo->Dims = minBlocksInfo->Dims; @@ -694,8 +620,7 @@ adios2_varinfo *adios2_inquire_blockinfo(adios2_engine *engine, { if (minBlocksInfo->Shape) { - varinfo->Shape = - (size_t *)malloc(sizeof(size_t) * minBlocksInfo->Dims); + varinfo->Shape = (size_t *)malloc(sizeof(size_t) * minBlocksInfo->Dims); memcpy(varinfo->Shape, minBlocksInfo->Shape, sizeof(size_t) * minBlocksInfo->Dims); } @@ -709,42 +634,35 @@ adios2_varinfo *adios2_inquire_blockinfo(adios2_engine *engine, if (minBlocksInfo->WasLocalValue) { b[i].Start = (size_t *)malloc(sizeof(size_t)); - b[i].Start[0] = - (intptr_t)minBlocksInfo->BlocksInfo[i].Start; + b[i].Start[0] = (intptr_t)minBlocksInfo->BlocksInfo[i].Start; b[i].Count = (size_t *)malloc(sizeof(size_t)); - b[i].Count[0] = - (intptr_t)minBlocksInfo->BlocksInfo[i].Count; + b[i].Count[0] = (intptr_t)minBlocksInfo->BlocksInfo[i].Count; } else { b[i].Start = b[i].Count = NULL; if (minBlocksInfo->BlocksInfo[i].Start) { - b[i].Start = (size_t *)malloc(sizeof(size_t) * - minBlocksInfo->Dims); + b[i].Start = (size_t *)malloc(sizeof(size_t) * minBlocksInfo->Dims); memcpy(b[i].Start, minBlocksInfo->BlocksInfo[i].Start, sizeof(size_t) * minBlocksInfo->Dims); } if (minBlocksInfo->BlocksInfo[i].Count) { - b[i].Count = (size_t *)malloc(sizeof(size_t) * - minBlocksInfo->Dims); + b[i].Count = (size_t *)malloc(sizeof(size_t) * minBlocksInfo->Dims); memcpy(b[i].Count, minBlocksInfo->BlocksInfo[i].Count, sizeof(size_t) * minBlocksInfo->Dims); } } if (minBlocksInfo->IsValue) { - memcpy(&b[i].Value, minBlocksInfo->BlocksInfo[i].BufferP, - sizeof(b[i].Value)); + memcpy(&b[i].Value, minBlocksInfo->BlocksInfo[i].BufferP, sizeof(b[i].Value)); } else { - memcpy(&b[i].MinUnion, - &minBlocksInfo->BlocksInfo[i].MinMax.MinUnion, + memcpy(&b[i].MinUnion, &minBlocksInfo->BlocksInfo[i].MinMax.MinUnion, sizeof(b[i].MinUnion)); - memcpy(&b[i].MaxUnion, - &minBlocksInfo->BlocksInfo[i].MinMax.MaxUnion, + memcpy(&b[i].MaxUnion, &minBlocksInfo->BlocksInfo[i].MinMax.MaxUnion, sizeof(b[i].MaxUnion)); } } @@ -760,13 +678,11 @@ adios2_varinfo *adios2_inquire_blockinfo(adios2_engine *engine, else if (type == adios2::helper::GetDataType()) { const auto blocksInfo = engineCpp->BlocksInfo( - *dynamic_cast *>( - variableBase), - step); + *dynamic_cast *>(variableBase), step); varinfo = (adios2_varinfo *)malloc(sizeof(adios2_varinfo)); varinfo->nblocks = blocksInfo.size(); - varinfo->BlocksInfo = (adios2_blockinfo *)malloc( - varinfo->nblocks * sizeof(adios2_blockinfo)); + varinfo->BlocksInfo = + (adios2_blockinfo *)malloc(varinfo->nblocks * sizeof(adios2_blockinfo)); auto *b = varinfo->BlocksInfo; varinfo->Dims = static_cast(blocksInfo[0].Shape.size()); @@ -787,31 +703,31 @@ adios2_varinfo *adios2_inquire_blockinfo(adios2_engine *engine, std::strcpy(b[i].Value.str, blocksInfo[i].Value.data()); }; } -#define declare_template_instantiation(T) \ - else if (type == adios2::helper::GetDataType()) \ - { \ - const auto blocksInfo = engineCpp->BlocksInfo( \ - *dynamic_cast *>(variableBase), step); \ - varinfo = (adios2_varinfo *)malloc(sizeof(adios2_varinfo)); \ - varinfo->nblocks = blocksInfo.size(); \ - varinfo->BlocksInfo = (adios2_blockinfo *)malloc( \ - varinfo->nblocks * sizeof(adios2_blockinfo)); \ - auto *b = varinfo->BlocksInfo; \ - \ - varinfo->Dims = static_cast(blocksInfo[0].Shape.size()); \ - varinfo->Shape = lf_CopyDims(blocksInfo[0].Shape); \ - varinfo->IsValue = (int)blocksInfo[0].IsValue; \ - varinfo->IsReverseDims = (int)blocksInfo[0].IsReverseDims; \ - for (size_t i = 0; i < varinfo->nblocks; ++i) \ - { \ - b[i].WriterID = blocksInfo[i].WriterID; \ - b[i].BlockID = blocksInfo[i].BlockID; \ - b[i].Start = lf_CopyDims(blocksInfo[i].Start); \ - b[i].Count = lf_CopyDims(blocksInfo[i].Count); \ - b[i].MinUnion.uint64 = 0; \ - b[i].MaxUnion.uint64 = 0; \ - b[i].Value.uint64 = 0; \ - }; \ +#define declare_template_instantiation(T) \ + else if (type == adios2::helper::GetDataType()) \ + { \ + const auto blocksInfo = engineCpp->BlocksInfo( \ + *dynamic_cast *>(variableBase), step); \ + varinfo = (adios2_varinfo *)malloc(sizeof(adios2_varinfo)); \ + varinfo->nblocks = blocksInfo.size(); \ + varinfo->BlocksInfo = \ + (adios2_blockinfo *)malloc(varinfo->nblocks * sizeof(adios2_blockinfo)); \ + auto *b = varinfo->BlocksInfo; \ + \ + varinfo->Dims = static_cast(blocksInfo[0].Shape.size()); \ + varinfo->Shape = lf_CopyDims(blocksInfo[0].Shape); \ + varinfo->IsValue = (int)blocksInfo[0].IsValue; \ + varinfo->IsReverseDims = (int)blocksInfo[0].IsReverseDims; \ + for (size_t i = 0; i < varinfo->nblocks; ++i) \ + { \ + b[i].WriterID = blocksInfo[i].WriterID; \ + b[i].BlockID = blocksInfo[i].BlockID; \ + b[i].Start = lf_CopyDims(blocksInfo[i].Start); \ + b[i].Count = lf_CopyDims(blocksInfo[i].Count); \ + b[i].MinUnion.uint64 = 0; \ + b[i].MaxUnion.uint64 = 0; \ + b[i].Value.uint64 = 0; \ + }; \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -838,16 +754,14 @@ void adios2_free_blockinfo(adios2_varinfo *data_blocks) } } -adios2_error adios2_close_by_index(adios2_engine *engine, - const int transport_index) +adios2_error adios2_close_by_index(adios2_engine *engine, const int transport_index) { try { adios2::helper::CheckForNullptr(engine, "for adios2_engine, in call to " "adios2_close or " "adios2_close_by_index"); - adios2::core::Engine *engineCpp = - reinterpret_cast(engine); + adios2::core::Engine *engineCpp = reinterpret_cast(engine); engineCpp->Close(transport_index); @@ -860,7 +774,7 @@ adios2_error adios2_close_by_index(adios2_engine *engine, } catch (...) { - return static_cast(adios2::helper::ExceptionToError( - "adios2_close or adios2_close_by_index")); + return static_cast( + adios2::helper::ExceptionToError("adios2_close or adios2_close_by_index")); } } diff --git a/bindings/C/adios2/c/adios2_c_engine.h b/bindings/C/adios2/c/adios2_c_engine.h index 984591dc7f..b5e0422651 100644 --- a/bindings/C/adios2/c/adios2_c_engine.h +++ b/bindings/C/adios2/c/adios2_c_engine.h @@ -29,8 +29,7 @@ extern "C" { * @param engine handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_engine_name(char *name, size_t *size, - const adios2_engine *engine); +adios2_error adios2_engine_name(char *name, size_t *size, const adios2_engine *engine); /** * Return engine type string and length without '\0\ character @@ -44,8 +43,7 @@ adios2_error adios2_engine_name(char *name, size_t *size, * @param engine handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_engine_get_type(char *type, size_t *size, - const adios2_engine *engine); +adios2_error adios2_engine_get_type(char *type, size_t *size, const adios2_engine *engine); /** * @brief Return the engine's Open mode @@ -53,8 +51,7 @@ adios2_error adios2_engine_get_type(char *type, size_t *size, * @param engine handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_engine_openmode(adios2_mode *mode, - const adios2_engine *engine); +adios2_error adios2_engine_openmode(adios2_mode *mode, const adios2_engine *engine); /** * @brief Begin a logical adios2 step stream @@ -67,18 +64,15 @@ adios2_error adios2_engine_openmode(adios2_mode *mode, * @param status output from enum adios2_step_status in adios2_c_types.h * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_begin_step(adios2_engine *engine, - const adios2_step_mode mode, - const float timeout_seconds, - adios2_step_status *status); +adios2_error adios2_begin_step(adios2_engine *engine, const adios2_step_mode mode, + const float timeout_seconds, adios2_step_status *status); /** * Inspect current logical step * @param current_step output * @param engine input handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_current_step(size_t *current_step, - const adios2_engine *engine); +adios2_error adios2_current_step(size_t *current_step, const adios2_engine *engine); /** * Inspect current between step status @@ -86,8 +80,7 @@ adios2_error adios2_current_step(size_t *current_step, * @param engine input handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_between_step_pairs(size_t *between_step_pairs, - const adios2_engine *engine); +adios2_error adios2_between_step_pairs(size_t *between_step_pairs, const adios2_engine *engine); /** * Inspect total number of available steps, use for file engines in read mode @@ -116,8 +109,8 @@ adios2_error adios2_steps(size_t *steps, const adios2_engine *engine); * * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_put(adios2_engine *engine, adios2_variable *variable, - const void *data, const adios2_mode launch); +adios2_error adios2_put(adios2_engine *engine, adios2_variable *variable, const void *data, + const adios2_mode launch); /** * Put data associated with a Variable in an engine, used for engines with @@ -137,8 +130,7 @@ adios2_error adios2_put(adios2_engine *engine, adios2_variable *variable, * * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_put_by_name(adios2_engine *engine, - const char *variable_name, const void *data, +adios2_error adios2_put_by_name(adios2_engine *engine, const char *variable_name, const void *data, const adios2_mode launch); /** @@ -180,8 +172,8 @@ adios2_error adios2_perform_data_write(adios2_engine *engine); * * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_get(adios2_engine *engine, adios2_variable *variable, - void *data, const adios2_mode launch); +adios2_error adios2_get(adios2_engine *engine, adios2_variable *variable, void *data, + const adios2_mode launch); /** * Gets data associated with a Variable from an engine, used for engines with @@ -204,8 +196,7 @@ adios2_error adios2_get(adios2_engine *engine, adios2_variable *variable, * * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_get_by_name(adios2_engine *engine, - const char *variable_name, void *data, +adios2_error adios2_get_by_name(adios2_engine *engine, const char *variable_name, void *data, const adios2_mode launch); /** @@ -239,8 +230,7 @@ adios2_error adios2_flush(adios2_engine *engine); * @param transport_index index to be flushed * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_flush_by_index(adios2_engine *engine, - const int transport_index); +adios2_error adios2_flush_by_index(adios2_engine *engine, const int transport_index); /** * Close all transports in adios2_Engine. Call is required to close system @@ -259,8 +249,7 @@ adios2_error adios2_close(adios2_engine *engine); * @param transport_index handler from adios2_add_transport * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_close_by_index(adios2_engine *engine, - const int transport_index); +adios2_error adios2_close_by_index(adios2_engine *engine, const int transport_index); /** * Promise that no more definitions or changes to defined variables will @@ -287,8 +276,7 @@ adios2_error adios2_lock_reader_selections(adios2_engine *engine); * @return Newly allocated adios2_varinfo structure, NULL pointer if step does * not exist. The memory must be freed by the adios2_free_blockinfo function */ -adios2_varinfo *adios2_inquire_blockinfo(adios2_engine *engine, - adios2_variable *variable, +adios2_varinfo *adios2_inquire_blockinfo(adios2_engine *engine, adios2_variable *variable, const size_t step); /** * free adios2_varinfo structure diff --git a/bindings/C/adios2/c/adios2_c_internal.h b/bindings/C/adios2/c/adios2_c_internal.h index 82f07fc232..0c30924462 100644 --- a/bindings/C/adios2/c/adios2_c_internal.h +++ b/bindings/C/adios2/c/adios2_c_internal.h @@ -33,35 +33,35 @@ adios2_error String2CAPI(const std::string &s, char *buf, size_t *size); #include "adios2_c_internal.inl" -#define ADIOS2_FOREACH_C_TYPE_1ARG(MACRO) \ - MACRO(adios2_type_int8_t) \ - MACRO(adios2_type_int16_t) \ - MACRO(adios2_type_int32_t) \ - MACRO(adios2_type_int64_t) \ - MACRO(adios2_type_uint8_t) \ - MACRO(adios2_type_uint16_t) \ - MACRO(adios2_type_uint32_t) \ - MACRO(adios2_type_uint64_t) \ - MACRO(adios2_type_float) \ - MACRO(adios2_type_double) \ - MACRO(adios2_type_long_double) \ - MACRO(adios2_type_float_complex) \ +#define ADIOS2_FOREACH_C_TYPE_1ARG(MACRO) \ + MACRO(adios2_type_int8_t) \ + MACRO(adios2_type_int16_t) \ + MACRO(adios2_type_int32_t) \ + MACRO(adios2_type_int64_t) \ + MACRO(adios2_type_uint8_t) \ + MACRO(adios2_type_uint16_t) \ + MACRO(adios2_type_uint32_t) \ + MACRO(adios2_type_uint64_t) \ + MACRO(adios2_type_float) \ + MACRO(adios2_type_double) \ + MACRO(adios2_type_long_double) \ + MACRO(adios2_type_float_complex) \ MACRO(adios2_type_double_complex) // calls MACRO for all adios2_type attribute types except for adios2_type_string -#define ADIOS2_FOREACH_C_ATTRIBUTE_TYPE_1ARG(MACRO) \ - MACRO(adios2_type_int8_t) \ - MACRO(adios2_type_int16_t) \ - MACRO(adios2_type_int32_t) \ - MACRO(adios2_type_int64_t) \ - MACRO(adios2_type_uint8_t) \ - MACRO(adios2_type_uint16_t) \ - MACRO(adios2_type_uint32_t) \ - MACRO(adios2_type_uint64_t) \ - MACRO(adios2_type_float) \ - MACRO(adios2_type_double) \ - MACRO(adios2_type_long_double) \ - MACRO(adios2_type_float_complex) \ +#define ADIOS2_FOREACH_C_ATTRIBUTE_TYPE_1ARG(MACRO) \ + MACRO(adios2_type_int8_t) \ + MACRO(adios2_type_int16_t) \ + MACRO(adios2_type_int32_t) \ + MACRO(adios2_type_int64_t) \ + MACRO(adios2_type_uint8_t) \ + MACRO(adios2_type_uint16_t) \ + MACRO(adios2_type_uint32_t) \ + MACRO(adios2_type_uint64_t) \ + MACRO(adios2_type_float) \ + MACRO(adios2_type_double) \ + MACRO(adios2_type_long_double) \ + MACRO(adios2_type_float_complex) \ MACRO(adios2_type_double_complex) #endif /* ADIOS2_BINDINGS_C_C_ADIOS2_C_INTERNAL_H_ */ diff --git a/bindings/C/adios2/c/adios2_c_io.cpp b/bindings/C/adios2/c/adios2_c_io.cpp index 89c66bc363..a4b8921224 100644 --- a/bindings/C/adios2/c/adios2_c_io.cpp +++ b/bindings/C/adios2/c/adios2_c_io.cpp @@ -25,17 +25,14 @@ adios2_error adios2_in_config_file(adios2_bool *result, const adios2_io *io) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_in_config_file"); - *result = reinterpret_cast(io)->InConfigFile() - ? adios2_true - : adios2_false; + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_in_config_file"); + *result = reinterpret_cast(io)->InConfigFile() ? adios2_true + : adios2_false; return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_in_config_file")); + return static_cast(adios2::helper::ExceptionToError("adios2_in_config_file")); } } @@ -43,15 +40,13 @@ adios2_error adios2_set_engine(adios2_io *io, const char *engine_type) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_set_engine"); + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_set_engine"); reinterpret_cast(io)->SetEngine(engine_type); return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_set_engine")); + return static_cast(adios2::helper::ExceptionToError("adios2_set_engine")); } } @@ -59,48 +54,39 @@ adios2_error adios2_set_parameters(adios2_io *io, const char *parameters) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_set_parameters"); + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_set_parameters"); reinterpret_cast(io)->SetParameters(parameters); return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_set_parameters")); + return static_cast(adios2::helper::ExceptionToError("adios2_set_parameters")); } } -adios2_error adios2_set_parameter(adios2_io *io, const char *key, - const char *value) +adios2_error adios2_set_parameter(adios2_io *io, const char *key, const char *value) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_set_parameter"); + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_set_parameter"); reinterpret_cast(io)->SetParameter(key, value); return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_set_parameter")); + return static_cast(adios2::helper::ExceptionToError("adios2_set_parameter")); } } -adios2_error adios2_get_parameter(char *value, size_t *size, - const adios2_io *io, const char *key) +adios2_error adios2_get_parameter(char *value, size_t *size, const adios2_io *io, const char *key) { try { - adios2::helper::CheckForNullptr( - io, "for const adios2_io, in call to adios2_get_parameter"); + adios2::helper::CheckForNullptr(io, "for const adios2_io, in call to adios2_get_parameter"); - const adios2::core::IO *ioCpp = - reinterpret_cast(io); + const adios2::core::IO *ioCpp = reinterpret_cast(io); - adios2::helper::CheckForNullptr( - size, "for size_t* size, in call to adios2_get_parameter"); + adios2::helper::CheckForNullptr(size, "for size_t* size, in call to adios2_get_parameter"); auto itParameter = ioCpp->m_Parameters.find(key); if (itParameter == ioCpp->m_Parameters.end()) @@ -113,8 +99,7 @@ adios2_error adios2_get_parameter(char *value, size_t *size, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_get_parameter")); + return static_cast(adios2::helper::ExceptionToError("adios2_get_parameter")); } } @@ -122,8 +107,7 @@ adios2_error adios2_clear_parameters(adios2_io *io) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_clear_parameters"); + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_clear_parameters"); reinterpret_cast(io)->ClearParameters(); return adios2_error_none; } @@ -134,34 +118,29 @@ adios2_error adios2_clear_parameters(adios2_io *io) } } -adios2_error adios2_add_transport(size_t *transport_index, adios2_io *io, - const char *type) +adios2_error adios2_add_transport(size_t *transport_index, adios2_io *io, const char *type) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_add_transport"); - *transport_index = - reinterpret_cast(io)->AddTransport(type); + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_add_transport"); + *transport_index = reinterpret_cast(io)->AddTransport(type); return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_add_transport")); + return static_cast(adios2::helper::ExceptionToError("adios2_add_transport")); } } -adios2_error adios2_set_transport_parameter(adios2_io *io, - const size_t transport_index, +adios2_error adios2_set_transport_parameter(adios2_io *io, const size_t transport_index, const char *key, const char *value) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_set_transport_parameter"); - reinterpret_cast(io)->SetTransportParameter( - transport_index, key, value); + adios2::helper::CheckForNullptr(io, + "for adios2_io, in call to adios2_set_transport_parameter"); + reinterpret_cast(io)->SetTransportParameter(transport_index, key, + value); return adios2_error_none; } catch (...) @@ -171,26 +150,22 @@ adios2_error adios2_set_transport_parameter(adios2_io *io, } } -adios2_variable * -adios2_define_variable(adios2_io *io, const char *name, const adios2_type type, - const size_t ndims, const size_t *shape, - const size_t *start, const size_t *count, - const adios2_constant_dims constant_dims) +adios2_variable *adios2_define_variable(adios2_io *io, const char *name, const adios2_type type, + const size_t ndims, const size_t *shape, + const size_t *start, const size_t *count, + const adios2_constant_dims constant_dims) { adios2_variable *variable = nullptr; try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_define_variable"); + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_define_variable"); adios2::core::VariableBase *variableCpp = nullptr; adios2::core::IO &ioCpp = *reinterpret_cast(io); - const bool constantSizeBool = - (constant_dims == adios2_constant_dims_true) ? true : false; + const bool constantSizeBool = (constant_dims == adios2_constant_dims_true) ? true : false; - auto lf_ConvertDims = [](const size_t ndims, - const size_t *in) -> adios2::Dims { + auto lf_ConvertDims = [](const size_t ndims, const size_t *in) -> adios2::Dims { if (in != nullptr) { return adios2::Dims(in, in + ndims); @@ -206,15 +181,15 @@ adios2_define_variable(adios2_io *io, const char *name, const adios2_type type, { case (adios2_type_string): { - variableCpp = &ioCpp.DefineVariable( - name, shapeV, startV, countV, constantSizeBool); + variableCpp = + &ioCpp.DefineVariable(name, shapeV, startV, countV, constantSizeBool); break; } -#define make_case(adios2_type) \ - case (adios2_type): { \ - variableCpp = &ioCpp.DefineVariable::Type>( \ - name, shapeV, startV, countV, constantSizeBool); \ - break; \ +#define make_case(adios2_type) \ + case (adios2_type): { \ + variableCpp = &ioCpp.DefineVariable::Type>( \ + name, shapeV, startV, countV, constantSizeBool); \ + break; \ } ADIOS2_FOREACH_C_TYPE_1ARG(make_case) #undef make_case @@ -243,8 +218,7 @@ adios2_variable *adios2_inquire_variable(adios2_io *io, const char *name) try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_inquire_variable"); + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_inquire_variable"); adios2::core::IO &ioCpp = *reinterpret_cast(io); const auto &dataMap = ioCpp.GetVariables(); @@ -262,10 +236,10 @@ adios2_variable *adios2_inquire_variable(adios2_io *io, const char *name) { // not supported } -#define declare_template_instantiation(T) \ - else if (type == adios2::helper::GetDataType()) \ - { \ - variableCpp = ioCpp.InquireVariable(name); \ +#define declare_template_instantiation(T) \ + else if (type == adios2::helper::GetDataType()) \ + { \ + variableCpp = ioCpp.InquireVariable(name); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -280,20 +254,18 @@ adios2_variable *adios2_inquire_variable(adios2_io *io, const char *name) return variable; } -adios2_error adios2_inquire_all_variables(adios2_variable ***variables, - size_t *size, adios2_io *io) +adios2_error adios2_inquire_all_variables(adios2_variable ***variables, size_t *size, adios2_io *io) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_inquire_all_variables"); + adios2::helper::CheckForNullptr(io, + "for adios2_io, in call to adios2_inquire_all_variables"); adios2::core::IO &ioCpp = *reinterpret_cast(io); const auto &dataMap = ioCpp.GetVariables(); *size = dataMap.size(); - adios2_variable **list = - (adios2_variable **)calloc(*size, sizeof(adios2_variable *)); + adios2_variable **list = (adios2_variable **)calloc(*size, sizeof(adios2_variable *)); // Sort the names so that we return the same order as the // C++, python APIs @@ -312,11 +284,11 @@ adios2_error adios2_inquire_all_variables(adios2_variable ***variables, { // not supported } -#define declare_template_instantiation(T) \ - else if (type == adios2::helper::GetDataType()) \ - { \ - variable = ioCpp.InquireVariable(name); \ - list[n] = reinterpret_cast(variable); \ +#define declare_template_instantiation(T) \ + else if (type == adios2::helper::GetDataType()) \ + { \ + variable = ioCpp.InquireVariable(name); \ + list[n] = reinterpret_cast(variable); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -333,13 +305,13 @@ adios2_error adios2_inquire_all_variables(adios2_variable ***variables, } } -adios2_error adios2_inquire_subgroups(char ***results, const char *full_prefix, - size_t *size, adios2_io *io) +adios2_error adios2_inquire_subgroups(char ***results, const char *full_prefix, size_t *size, + adios2_io *io) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_inquire_all_variables"); + adios2::helper::CheckForNullptr(io, + "for adios2_io, in call to adios2_inquire_all_variables"); adios2::core::IO &ioCpp = *reinterpret_cast(io); const auto &dataMapVar = ioCpp.GetVariables(); @@ -355,8 +327,7 @@ adios2_error adios2_inquire_subgroups(char ***results, const char *full_prefix, { auto pos = curr.find("/", prefix_size + 1); if (pos != std::string::npos) - subGrpNames.insert( - curr.substr(prefix_size, pos - prefix_size)); + subGrpNames.insert(curr.substr(prefix_size, pos - prefix_size)); } } @@ -370,8 +341,7 @@ adios2_error adios2_inquire_subgroups(char ***results, const char *full_prefix, { auto hasVar = dataMapVar.find(curr.substr(0, pos)); if (hasVar == dataMapVar.end()) - subGrpNames.insert( - curr.substr(prefix_size, pos - prefix_size)); + subGrpNames.insert(curr.substr(prefix_size, pos - prefix_size)); // else // std::cout<<" .. found a variable! "<(io); const auto &dataMap = ioCpp.GetVariables(); @@ -431,8 +400,7 @@ adios2_error adios2_inquire_group_variables(adios2_variable ***variables, } *size = names.size(); - adios2_variable **list = - (adios2_variable **)calloc(*size, sizeof(adios2_variable *)); + adios2_variable **list = (adios2_variable **)calloc(*size, sizeof(adios2_variable *)); size_t n = 0; for (auto &name : names) @@ -445,11 +413,11 @@ adios2_error adios2_inquire_group_variables(adios2_variable ***variables, { // not supported } -#define declare_template_instantiation(T) \ - else if (type == adios2::helper::GetDataType()) \ - { \ - variable = ioCpp.InquireVariable(name); \ - list[n] = reinterpret_cast(variable); \ +#define declare_template_instantiation(T) \ + else if (type == adios2::helper::GetDataType()) \ + { \ + variable = ioCpp.InquireVariable(name); \ + list[n] = reinterpret_cast(variable); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -466,25 +434,22 @@ adios2_error adios2_inquire_group_variables(adios2_variable ***variables, } } -adios2_attribute *adios2_define_attribute(adios2_io *io, const char *name, - const adios2_type type, +adios2_attribute *adios2_define_attribute(adios2_io *io, const char *name, const adios2_type type, const void *value) { return adios2_define_variable_attribute(io, name, type, value, "", ""); } adios2_attribute *adios2_define_attribute_array(adios2_io *io, const char *name, - const adios2_type type, - const void *data, + const adios2_type type, const void *data, const size_t size) { - return adios2_define_variable_attribute_array(io, name, type, data, size, - "", ""); + return adios2_define_variable_attribute_array(io, name, type, data, size, "", ""); } -adios2_attribute *adios2_define_variable_attribute( - adios2_io *io, const char *name, const adios2_type type, const void *value, - const char *variable_name, const char *separator) +adios2_attribute *adios2_define_variable_attribute(adios2_io *io, const char *name, + const adios2_type type, const void *value, + const char *variable_name, const char *separator) { adios2_attribute *attribute = nullptr; @@ -495,9 +460,8 @@ adios2_attribute *adios2_define_variable_attribute( "adios2_define_variable_attribute"); adios2::helper::CheckForNullptr( - value, - "for const void* data, in call to adios2_define_attribute or " - "adios2_define_variable_attribute"); + value, "for const void* data, in call to adios2_define_attribute or " + "adios2_define_variable_attribute"); adios2::core::IO &ioCpp = *reinterpret_cast(io); adios2::core::AttributeBase *attributeCpp = nullptr; @@ -506,20 +470,17 @@ adios2_attribute *adios2_define_variable_attribute( { case (adios2_type_string): { // relying on null terminated character for the size - const std::string singleString( - reinterpret_cast(value)); - attributeCpp = &ioCpp.DefineAttribute( - name, singleString, variable_name, separator); + const std::string singleString(reinterpret_cast(value)); + attributeCpp = + &ioCpp.DefineAttribute(name, singleString, variable_name, separator); break; } -#define make_case(adios2_type) \ - case (adios2_type): { \ - attributeCpp = &ioCpp.DefineAttribute( \ - name, \ - *reinterpret_cast::Type *>( \ - value), \ - variable_name, separator); \ - break; \ +#define make_case(adios2_type) \ + case (adios2_type): { \ + attributeCpp = &ioCpp.DefineAttribute( \ + name, *reinterpret_cast::Type *>(value), \ + variable_name, separator); \ + break; \ } ADIOS2_FOREACH_C_ATTRIBUTE_TYPE_1ARG(make_case) #undef make_case @@ -543,26 +504,26 @@ adios2_attribute *adios2_define_variable_attribute( return attribute; } -adios2_attribute *adios2_define_variable_attribute_array( - adios2_io *io, const char *name, const adios2_type type, const void *data, - const size_t size, const char *variable_name, const char *separator) +adios2_attribute *adios2_define_variable_attribute_array(adios2_io *io, const char *name, + const adios2_type type, const void *data, + const size_t size, + const char *variable_name, + const char *separator) { adios2_attribute *attribute = nullptr; try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_define_attribute"); + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_define_attribute"); - adios2::helper::CheckForNullptr( - data, "for const void* data, in call to adios2_define_attribute"); + adios2::helper::CheckForNullptr(data, + "for const void* data, in call to adios2_define_attribute"); if (size == 0) { - throw std::invalid_argument( - "ERROR: size of attribute array " + std::string(name) + - " can't be 0, in call to adios2_define_attribute or " - "adios2_define_variable_attribute"); + throw std::invalid_argument("ERROR: size of attribute array " + std::string(name) + + " can't be 0, in call to adios2_define_attribute or " + "adios2_define_variable_attribute"); } adios2::core::IO &ioCpp = *reinterpret_cast(io); @@ -571,34 +532,30 @@ adios2_attribute *adios2_define_variable_attribute_array( switch (type) { case (adios2_type_string): { - const char **char2D = - reinterpret_cast(const_cast(data)); + const char **char2D = reinterpret_cast(const_cast(data)); std::vector arrayStrings(char2D, char2D + size); attributeCpp = &ioCpp.DefineAttribute( - name, arrayStrings.data(), arrayStrings.size(), variable_name, - separator); + name, arrayStrings.data(), arrayStrings.size(), variable_name, separator); break; } -#define make_case(adios2_type) \ - case (adios2_type): { \ - attributeCpp = &ioCpp.DefineAttribute( \ - name, \ - reinterpret_cast::Type *>(data), \ - size, variable_name, separator); \ - break; \ +#define make_case(adios2_type) \ + case (adios2_type): { \ + attributeCpp = &ioCpp.DefineAttribute( \ + name, reinterpret_cast::Type *>(data), size, \ + variable_name, separator); \ + break; \ } ADIOS2_FOREACH_C_ATTRIBUTE_TYPE_1ARG(make_case) #undef make_case default: { - throw std::invalid_argument( - "ERROR: unsupported type " + - std::to_string(static_cast(type)) + - ", see enum adios2_type for acceptable " - "types, in call to " - "adios2_define_attribute_array or " - "adios2_define_variable_attribute_array\n"); + throw std::invalid_argument("ERROR: unsupported type " + + std::to_string(static_cast(type)) + + ", see enum adios2_type for acceptable " + "types, in call to " + "adios2_define_attribute_array or " + "adios2_define_variable_attribute_array\n"); } } @@ -606,9 +563,8 @@ adios2_attribute *adios2_define_variable_attribute_array( } catch (...) { - adios2::helper::ExceptionToError( - "adios2_define_attribute_array or " - "adios_define_variable_attribute_array"); + adios2::helper::ExceptionToError("adios2_define_attribute_array or " + "adios_define_variable_attribute_array"); } return attribute; } @@ -618,8 +574,7 @@ adios2_attribute *adios2_inquire_attribute(adios2_io *io, const char *name) adios2_attribute *attribute = nullptr; try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_inquire_attribute"); + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_inquire_attribute"); adios2::core::IO &ioCpp = *reinterpret_cast(io); const auto &dataMap = ioCpp.GetAttributes(); @@ -637,10 +592,10 @@ adios2_attribute *adios2_inquire_attribute(adios2_io *io, const char *name) { // not supported } -#define declare_template_instantiation(T) \ - else if (type == adios2::helper::GetDataType()) \ - { \ - attributeCpp = ioCpp.InquireAttribute(name); \ +#define declare_template_instantiation(T) \ + else if (type == adios2::helper::GetDataType()) \ + { \ + attributeCpp = ioCpp.InquireAttribute(name); \ } ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -655,8 +610,7 @@ adios2_attribute *adios2_inquire_attribute(adios2_io *io, const char *name) return attribute; } -adios2_attribute *adios2_inquire_variable_attribute(adios2_io *io, - const char *name, +adios2_attribute *adios2_inquire_variable_attribute(adios2_io *io, const char *name, const char *variable_name, const char *separator) { @@ -666,20 +620,19 @@ adios2_attribute *adios2_inquire_variable_attribute(adios2_io *io, return adios2_inquire_attribute(io, globalName.c_str()); } -adios2_error adios2_inquire_all_attributes(adios2_attribute ***attributes, - size_t *size, adios2_io *io) +adios2_error adios2_inquire_all_attributes(adios2_attribute ***attributes, size_t *size, + adios2_io *io) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_inquire_all_attributes"); + adios2::helper::CheckForNullptr(io, + "for adios2_io, in call to adios2_inquire_all_attributes"); adios2::core::IO &ioCpp = *reinterpret_cast(io); const auto &dataMap = ioCpp.GetAttributes(); *size = dataMap.size(); - adios2_attribute **list = - (adios2_attribute **)calloc(*size, sizeof(adios2_attribute *)); + adios2_attribute **list = (adios2_attribute **)calloc(*size, sizeof(adios2_attribute *)); // Sort the names so that we return the same order as the // C++, python APIs @@ -698,14 +651,13 @@ adios2_error adios2_inquire_all_attributes(adios2_attribute ***attributes, { // not supported } -#define declare_template_instantiation(T) \ - else if (type == adios2::helper::GetDataType()) \ - { \ - attribute = ioCpp.InquireAttribute(name); \ - list[n] = reinterpret_cast(attribute); \ - } - ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG( - declare_template_instantiation) +#define declare_template_instantiation(T) \ + else if (type == adios2::helper::GetDataType()) \ + { \ + attribute = ioCpp.InquireAttribute(name); \ + list[n] = reinterpret_cast(attribute); \ + } + ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation n++; @@ -721,13 +673,12 @@ adios2_error adios2_inquire_all_attributes(adios2_attribute ***attributes, } adios2_error adios2_inquire_group_attributes(adios2_attribute ***attributes, - const char *full_prefix, - size_t *size, adios2_io *io) + const char *full_prefix, size_t *size, adios2_io *io) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_inquire_all_attributes"); + adios2::helper::CheckForNullptr(io, + "for adios2_io, in call to adios2_inquire_all_attributes"); adios2::core::IO &ioCpp = *reinterpret_cast(io); const auto &dataMap = ioCpp.GetAttributes(); @@ -754,8 +705,7 @@ adios2_error adios2_inquire_group_attributes(adios2_attribute ***attributes, if (0 == *size) return adios2_error_none; - adios2_attribute **list = - (adios2_attribute **)calloc(*size, sizeof(adios2_attribute *)); + adios2_attribute **list = (adios2_attribute **)calloc(*size, sizeof(adios2_attribute *)); size_t n = 0; for (auto &name : names) @@ -768,14 +718,13 @@ adios2_error adios2_inquire_group_attributes(adios2_attribute ***attributes, { // not supported } -#define declare_template_instantiation(T) \ - else if (type == adios2::helper::GetDataType()) \ - { \ - attribute = ioCpp.InquireAttribute(name); \ - list[n] = reinterpret_cast(attribute); \ - } - ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG( - declare_template_instantiation) +#define declare_template_instantiation(T) \ + else if (type == adios2::helper::GetDataType()) \ + { \ + attribute = ioCpp.InquireAttribute(name); \ + list[n] = reinterpret_cast(attribute); \ + } + ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation n++; @@ -791,17 +740,14 @@ adios2_error adios2_inquire_group_attributes(adios2_attribute ***attributes, } // DANGEROUS -adios2_error adios2_remove_variable(adios2_bool *result, adios2_io *io, - const char *name) +adios2_error adios2_remove_variable(adios2_bool *result, adios2_io *io, const char *name) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_remove_variable"); + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_remove_variable"); - *result = reinterpret_cast(io)->RemoveVariable(name) - ? adios2_true - : adios2_false; + *result = reinterpret_cast(io)->RemoveVariable(name) ? adios2_true + : adios2_false; return adios2_error_none; } @@ -816,8 +762,8 @@ adios2_error adios2_remove_all_variables(adios2_io *io) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_remove_all_variables"); + adios2::helper::CheckForNullptr(io, + "for adios2_io, in call to adios2_remove_all_variables"); reinterpret_cast(io)->RemoveAllVariables(); return adios2_error_none; @@ -829,17 +775,13 @@ adios2_error adios2_remove_all_variables(adios2_io *io) } } -adios2_error adios2_remove_attribute(adios2_bool *result, adios2_io *io, - const char *name) +adios2_error adios2_remove_attribute(adios2_bool *result, adios2_io *io, const char *name) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_remove_attribute"); - *result = - reinterpret_cast(io)->RemoveAttribute(name) - ? adios2_true - : adios2_false; + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_remove_attribute"); + *result = reinterpret_cast(io)->RemoveAttribute(name) ? adios2_true + : adios2_false; return adios2_error_none; } catch (...) @@ -853,8 +795,8 @@ adios2_error adios2_remove_all_attributes(adios2_io *io) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_remove_all_attributes"); + adios2::helper::CheckForNullptr(io, + "for adios2_io, in call to adios2_remove_all_attributes"); reinterpret_cast(io)->RemoveAllAttributes(); return adios2_error_none; } @@ -869,8 +811,7 @@ char **adios2_available_variables(adios2_io *io, size_t *size) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_available_variables"); + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_available_variables"); std::map> varInfo = reinterpret_cast(io)->GetAvailableVariables(); *size = varInfo.size(); @@ -896,8 +837,8 @@ char **adios2_available_attributes(adios2_io *io, size_t *size) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_available_attributes"); + adios2::helper::CheckForNullptr(io, + "for adios2_io, in call to adios2_available_attributes"); std::map> varInfo = reinterpret_cast(io)->GetAvailableAttributes(); *size = varInfo.size(); @@ -919,17 +860,14 @@ char **adios2_available_attributes(adios2_io *io, size_t *size) return NULL; } } -adios2_engine *adios2_open(adios2_io *io, const char *name, - const adios2_mode mode) +adios2_engine *adios2_open(adios2_io *io, const char *name, const adios2_mode mode) { adios2_engine *engine = nullptr; try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_open"); + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_open"); engine = reinterpret_cast( - &reinterpret_cast(io)->Open( - name, adios2_ToOpenMode(mode))); + &reinterpret_cast(io)->Open(name, adios2_ToOpenMode(mode))); } catch (...) { @@ -942,8 +880,7 @@ adios2_error adios2_flush_all_engines(adios2_io *io) { try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_flush_all_engines"); + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_flush_all_engines"); reinterpret_cast(io)->FlushAll(); return adios2_error_none; } @@ -954,25 +891,21 @@ adios2_error adios2_flush_all_engines(adios2_io *io) } } -adios2_error adios2_engine_type(char *engine_type, size_t *size, - const adios2_io *io) +adios2_error adios2_engine_type(char *engine_type, size_t *size, const adios2_io *io) { try { - adios2::helper::CheckForNullptr( - io, "for const adios2_io, in call to adios2_io_engine_type"); - adios2::helper::CheckForNullptr( - size, "for size_t* size, in call to adios2_io_engine_type"); + adios2::helper::CheckForNullptr(io, + "for const adios2_io, in call to adios2_io_engine_type"); + adios2::helper::CheckForNullptr(size, "for size_t* size, in call to adios2_io_engine_type"); - const adios2::core::IO *ioCpp = - reinterpret_cast(io); + const adios2::core::IO *ioCpp = reinterpret_cast(io); return String2CAPI(ioCpp->m_EngineType, engine_type, size); } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_engine_type")); + return static_cast(adios2::helper::ExceptionToError("adios2_engine_type")); } } @@ -981,8 +914,7 @@ adios2_engine *adios2_get_engine(adios2_io *io, const char *name) adios2_engine *engine = nullptr; try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_open"); + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_open"); engine = reinterpret_cast( &reinterpret_cast(io)->GetEngine(name)); } diff --git a/bindings/C/adios2/c/adios2_c_io.h b/bindings/C/adios2/c/adios2_c_io.h index 271c2d87c6..8a8272c5a7 100644 --- a/bindings/C/adios2/c/adios2_c_io.h +++ b/bindings/C/adios2/c/adios2_c_io.h @@ -54,8 +54,7 @@ adios2_error adios2_set_parameters(adios2_io *io, const char *parameters); * @param value parameter value * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_set_parameter(adios2_io *io, const char *key, - const char *value); +adios2_error adios2_set_parameter(adios2_io *io, const char *key, const char *value); /** * Return IO parameter value string and length without '\0\ character @@ -70,8 +69,7 @@ adios2_error adios2_set_parameter(adios2_io *io, const char *key, * untouched * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_get_parameter(char *value, size_t *size, - const adios2_io *io, const char *key); +adios2_error adios2_get_parameter(char *value, size_t *size, const adios2_io *io, const char *key); /** * @brief Clear all parameters. @@ -90,8 +88,7 @@ adios2_error adios2_clear_parameters(adios2_io *io); * CAN'T use the keywords "Transport" or "transport" * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_add_transport(size_t *transport_index, adios2_io *io, - const char *type); +adios2_error adios2_add_transport(size_t *transport_index, adios2_io *io, const char *type); /** * @brief Set a single parameter to an existing transport identified @@ -103,8 +100,7 @@ adios2_error adios2_add_transport(size_t *transport_index, adios2_io *io, * @param value parameter value * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_set_transport_parameter(adios2_io *io, - const size_t transport_index, +adios2_error adios2_set_transport_parameter(adios2_io *io, const size_t transport_index, const char *key, const char *value); /** @@ -121,11 +117,10 @@ adios2_error adios2_set_transport_parameter(adios2_io *io, * after definition * @return success: handler, failure: NULL */ -adios2_variable * -adios2_define_variable(adios2_io *io, const char *name, const adios2_type type, - const size_t ndims, const size_t *shape, - const size_t *start, const size_t *count, - const adios2_constant_dims constant_dims); +adios2_variable *adios2_define_variable(adios2_io *io, const char *name, const adios2_type type, + const size_t ndims, const size_t *shape, + const size_t *start, const size_t *count, + const adios2_constant_dims constant_dims); /** * @brief Retrieve a variable handler within current io handler @@ -144,15 +139,15 @@ adios2_variable *adios2_inquire_variable(adios2_io *io, const char *name); * @param io handler to variables io owner * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_inquire_all_variables(adios2_variable ***variables, - size_t *size, adios2_io *io); +adios2_error adios2_inquire_all_variables(adios2_variable ***variables, size_t *size, + adios2_io *io); /* * list all variables under full_group_name */ adios2_error adios2_inquire_group_variables(adios2_variable ***variables, - const char *full_group_name, - size_t *size, adios2_io *io); + const char *full_group_name, size_t *size, + adios2_io *io); /** * @brief Define an attribute value inside io @@ -162,8 +157,7 @@ adios2_error adios2_inquire_group_variables(adios2_variable ***variables, * @param value attribute single value * @return success: handler, failure: NULL */ -adios2_attribute *adios2_define_attribute(adios2_io *io, const char *name, - const adios2_type type, +adios2_attribute *adios2_define_attribute(adios2_io *io, const char *name, const adios2_type type, const void *value); /** @@ -176,8 +170,7 @@ adios2_attribute *adios2_define_attribute(adios2_io *io, const char *name, * @return success: handler, failure: NULL */ adios2_attribute *adios2_define_attribute_array(adios2_io *io, const char *name, - const adios2_type type, - const void *data, + const adios2_type type, const void *data, const size_t size); /** @@ -192,9 +185,10 @@ adios2_attribute *adios2_define_attribute_array(adios2_io *io, const char *name, * @param separator hierarchy separator (e.g. "/" in variable_name/name ) * @return success: handler, failure: NULL */ -adios2_attribute *adios2_define_variable_attribute( - adios2_io *io, const char *name, const adios2_type type, const void *value, - const char *variable_name, const char *separator); +adios2_attribute *adios2_define_variable_attribute(adios2_io *io, const char *name, + const adios2_type type, const void *value, + const char *variable_name, + const char *separator); /** * Define an attribute array associated to an existing variable by its name @@ -208,9 +202,11 @@ adios2_attribute *adios2_define_variable_attribute( * @param separator hierarchy separator (e.g. "/" in variable/attribute ) * @return success: handler, failure: NULL */ -adios2_attribute *adios2_define_variable_attribute_array( - adios2_io *io, const char *name, const adios2_type type, const void *data, - const size_t size, const char *variable_name, const char *separator); +adios2_attribute *adios2_define_variable_attribute_array(adios2_io *io, const char *name, + const adios2_type type, const void *data, + const size_t size, + const char *variable_name, + const char *separator); /** * Returns a handler to a previously defined attribute by name @@ -228,8 +224,7 @@ adios2_attribute *adios2_inquire_attribute(adios2_io *io, const char *name); * @param separator hierarchy separator (e.g. "/" in variable/attribute ) * @return found: handler, not found: NULL */ -adios2_attribute *adios2_inquire_variable_attribute(adios2_io *io, - const char *name, +adios2_attribute *adios2_inquire_variable_attribute(adios2_io *io, const char *name, const char *variable_name, const char *separator); /** @@ -241,18 +236,16 @@ adios2_attribute *adios2_inquire_variable_attribute(adios2_io *io, * @param io handler to attributes io owner * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_inquire_all_attributes(adios2_attribute ***attributes, - size_t *size, adios2_io *io); +adios2_error adios2_inquire_all_attributes(adios2_attribute ***attributes, size_t *size, + adios2_io *io); adios2_error adios2_inquire_group_attributes(adios2_attribute ***attributes, - const char *full_prefix, - size_t *size, adios2_io *io); + const char *full_prefix, size_t *size, adios2_io *io); /** * Return a list of list sub group names * */ -adios2_error adios2_inquire_subgroups(char ***subGroupNames, - const char *full_prefix, size_t *size, +adios2_error adios2_inquire_subgroups(char ***subGroupNames, const char *full_prefix, size_t *size, adios2_io *io); /** @@ -264,8 +257,7 @@ adios2_error adios2_inquire_subgroups(char ***subGroupNames, * @param name unique variable name within io handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_remove_variable(adios2_bool *result, adios2_io *io, - const char *name); +adios2_error adios2_remove_variable(adios2_bool *result, adios2_io *io, const char *name); /** * @brief DANGEROUS! Removes all existing variables in current IO object. @@ -301,8 +293,7 @@ char **adios2_available_attributes(adios2_io *io, size_t *size); * @param name unique attribute name within io handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_remove_attribute(adios2_bool *result, adios2_io *io, - const char *name); +adios2_error adios2_remove_attribute(adios2_bool *result, adios2_io *io, const char *name); /** * @brief DANGEROUS! Removes all existing attributes in current IO object. @@ -322,8 +313,7 @@ adios2_error adios2_remove_all_attributes(adios2_io *io); * adios2_mode_readRandomAccess * @return success: handler, failure: NULL */ -adios2_engine *adios2_open(adios2_io *io, const char *name, - const adios2_mode mode); +adios2_engine *adios2_open(adios2_io *io, const char *name, const adios2_mode mode); #if ADIOS2_USE_MPI /** @@ -336,8 +326,8 @@ adios2_engine *adios2_open(adios2_io *io, const char *name, * @param comm communicator other than adios' handler comm. MPI only. * @return success: handler, failure: NULL */ -adios2_engine *adios2_open_new_comm(adios2_io *io, const char *name, - const adios2_mode mode, MPI_Comm comm); +adios2_engine *adios2_open_new_comm(adios2_io *io, const char *name, const adios2_mode mode, + MPI_Comm comm); #endif /** @@ -359,8 +349,7 @@ adios2_error adios2_flush_all_engines(adios2_io *io); * @param io handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_engine_type(char *engine_type, size_t *size, - const adios2_io *io); +adios2_error adios2_engine_type(char *engine_type, size_t *size, const adios2_io *io); adios2_engine *adios2_get_engine(adios2_io *io, const char *name); diff --git a/bindings/C/adios2/c/adios2_c_io_mpi.cpp b/bindings/C/adios2/c/adios2_c_io_mpi.cpp index 58344cbe45..d7b7e3d24a 100644 --- a/bindings/C/adios2/c/adios2_c_io_mpi.cpp +++ b/bindings/C/adios2/c/adios2_c_io_mpi.cpp @@ -18,18 +18,15 @@ extern "C" { -adios2_engine *adios2_open_new_comm(adios2_io *io, const char *name, - const adios2_mode mode, MPI_Comm comm) +adios2_engine *adios2_open_new_comm(adios2_io *io, const char *name, const adios2_mode mode, + MPI_Comm comm) { adios2_engine *engine = nullptr; try { - adios2::helper::CheckForNullptr( - io, "for adios2_io, in call to adios2_open"); - engine = reinterpret_cast( - &reinterpret_cast(io)->Open( - name, adios2_ToOpenMode(mode), - adios2::helper::CommDupMPI(comm))); + adios2::helper::CheckForNullptr(io, "for adios2_io, in call to adios2_open"); + engine = reinterpret_cast(&reinterpret_cast(io)->Open( + name, adios2_ToOpenMode(mode), adios2::helper::CommDupMPI(comm))); } catch (...) { diff --git a/bindings/C/adios2/c/adios2_c_operator.cpp b/bindings/C/adios2/c/adios2_c_operator.cpp index 7c90c583f1..b61d8cf9df 100644 --- a/bindings/C/adios2/c/adios2_c_operator.cpp +++ b/bindings/C/adios2/c/adios2_c_operator.cpp @@ -13,23 +13,18 @@ #include "adios2/helper/adiosFunctions.h" #include "adios2_c_internal.h" -adios2_error adios2_operator_type(char *type, size_t *size, - const adios2_operator *op) +adios2_error adios2_operator_type(char *type, size_t *size, const adios2_operator *op) { try { - adios2::helper::CheckForNullptr( - op, "for adios2_operator, in call to adios2_operator_type"); + adios2::helper::CheckForNullptr(op, "for adios2_operator, in call to adios2_operator_type"); - auto *opCpp = - reinterpret_cast *>( - op); + auto *opCpp = reinterpret_cast *>(op); return String2CAPI(opCpp->first, type, size); } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_operator_type")); + return static_cast(adios2::helper::ExceptionToError("adios2_operator_type")); } } diff --git a/bindings/C/adios2/c/adios2_c_operator.h b/bindings/C/adios2/c/adios2_c_operator.h index b79e82ae1d..c9d359326e 100644 --- a/bindings/C/adios2/c/adios2_c_operator.h +++ b/bindings/C/adios2/c/adios2_c_operator.h @@ -28,8 +28,7 @@ extern "C" { * @param op operator handler to be inspected * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_operator_type(char *type, size_t *size, - const adios2_operator *op); +adios2_error adios2_operator_type(char *type, size_t *size, const adios2_operator *op); #ifdef __cplusplus } // end extern C diff --git a/bindings/C/adios2/c/adios2_c_variable.cpp b/bindings/C/adios2/c/adios2_c_variable.cpp index df0ac4cd9f..0dc04d7ef2 100644 --- a/bindings/C/adios2/c/adios2_c_variable.cpp +++ b/bindings/C/adios2/c/adios2_c_variable.cpp @@ -16,8 +16,7 @@ namespace { -adios2_shapeid adios2_ToShapeID(const adios2::ShapeID shapeIDCpp, - const std::string &hint) +adios2_shapeid adios2_ToShapeID(const adios2::ShapeID shapeIDCpp, const std::string &hint) { adios2_shapeid shapeID = adios2_shapeid_unknown; switch (shapeIDCpp) @@ -44,8 +43,7 @@ adios2_shapeid adios2_ToShapeID(const adios2::ShapeID shapeIDCpp, break; default: - throw std::invalid_argument("ERROR: invalid adios2_shapeid, " + hint + - "\n"); + throw std::invalid_argument("ERROR: invalid adios2_shapeid, " + hint + "\n"); } return shapeID; @@ -57,14 +55,12 @@ adios2_shapeid adios2_ToShapeID(const adios2::ShapeID shapeIDCpp, extern "C" { #endif -adios2_error adios2_set_shape(adios2_variable *variable, const size_t ndims, - const size_t *shape) +adios2_error adios2_set_shape(adios2_variable *variable, const size_t ndims, const size_t *shape) { try { - adios2::helper::CheckForNullptr(variable, - "for adios2_variable, in call to " - "adios2_set_shape"); + adios2::helper::CheckForNullptr(variable, "for adios2_variable, in call to " + "adios2_set_shape"); adios2::helper::CheckForNullptr(shape, "for start, in call to " "adios2_set_shape"); @@ -77,19 +73,16 @@ adios2_error adios2_set_shape(adios2_variable *variable, const size_t ndims, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_set_shape")); + return static_cast(adios2::helper::ExceptionToError("adios2_set_shape")); } } -adios2_error adios2_set_block_selection(adios2_variable *variable, - const size_t block_id) +adios2_error adios2_set_block_selection(adios2_variable *variable, const size_t block_id) { try { - adios2::helper::CheckForNullptr(variable, - "for adios2_variable, in call to " - "adios2_set_block_selection"); + adios2::helper::CheckForNullptr(variable, "for adios2_variable, in call to " + "adios2_set_block_selection"); adios2::core::VariableBase *variableBase = reinterpret_cast(variable); @@ -108,17 +101,15 @@ adios2_error adios2_set_selection(adios2_variable *variable, const size_t ndims, { try { - adios2::helper::CheckForNullptr(variable, - "for adios2_variable, in call to " - "adios2_set_selection"); + adios2::helper::CheckForNullptr(variable, "for adios2_variable, in call to " + "adios2_set_selection"); adios2::helper::CheckForNullptr(count, "for count, in call to " "adios2_set_selection"); adios2::core::VariableBase *variableBase = reinterpret_cast(variable); - const adios2::Dims startV = (start == nullptr) - ? adios2::Dims() - : adios2::Dims(start, start + ndims); + const adios2::Dims startV = + (start == nullptr) ? adios2::Dims() : adios2::Dims(start, start + ndims); const adios2::Dims countV = adios2::Dims(count, count + ndims); variableBase->SetSelection({startV, countV}); @@ -127,27 +118,21 @@ adios2_error adios2_set_selection(adios2_variable *variable, const size_t ndims, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_set_selection")); + return static_cast(adios2::helper::ExceptionToError("adios2_set_selection")); } } -adios2_error adios2_set_memory_selection(adios2_variable *variable, - const size_t ndims, - const size_t *memory_start, - const size_t *memory_count) +adios2_error adios2_set_memory_selection(adios2_variable *variable, const size_t ndims, + const size_t *memory_start, const size_t *memory_count) { try { - adios2::helper::CheckForNullptr(variable, - "for adios2_variable, in call to " - "adios2_set_memory_selection"); - adios2::helper::CheckForNullptr(memory_start, - "for start, in call to " - "adios2_set_memory_selection"); - adios2::helper::CheckForNullptr(memory_count, - "for count, in call to " - "adios2_set_memory_selection"); + adios2::helper::CheckForNullptr(variable, "for adios2_variable, in call to " + "adios2_set_memory_selection"); + adios2::helper::CheckForNullptr(memory_start, "for start, in call to " + "adios2_set_memory_selection"); + adios2::helper::CheckForNullptr(memory_count, "for count, in call to " + "adios2_set_memory_selection"); adios2::core::VariableBase *variableBase = reinterpret_cast(variable); @@ -163,38 +148,31 @@ adios2_error adios2_set_memory_selection(adios2_variable *variable, } } -adios2_error adios2_set_step_selection(adios2_variable *variable, - const size_t step_start, +adios2_error adios2_set_step_selection(adios2_variable *variable, const size_t step_start, const size_t step_count) { try { - adios2::helper::CheckForNullptr(variable, - "for adios2_variable, in call to " - "adios2_set_step_selection"); + adios2::helper::CheckForNullptr(variable, "for adios2_variable, in call to " + "adios2_set_step_selection"); adios2::core::VariableBase *variableBase = reinterpret_cast(variable); - variableBase->SetStepSelection( - adios2::Box{step_start, step_count}); + variableBase->SetStepSelection(adios2::Box{step_start, step_count}); return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_set_selection")); + return static_cast(adios2::helper::ExceptionToError("adios2_set_selection")); } } -adios2_error adios2_variable_name(char *name, size_t *size, - const adios2_variable *variable) +adios2_error adios2_variable_name(char *name, size_t *size, const adios2_variable *variable) { try { adios2::helper::CheckForNullptr( - variable, - "for const adios2_variable, in call to adios2_variable_name"); - adios2::helper::CheckForNullptr( - size, "for size_t* size, in call to adios2_variable_name"); + variable, "for const adios2_variable, in call to adios2_variable_name"); + adios2::helper::CheckForNullptr(size, "for size_t* size, in call to adios2_variable_name"); const adios2::core::VariableBase *variableBase = reinterpret_cast(variable); @@ -202,19 +180,16 @@ adios2_error adios2_variable_name(char *name, size_t *size, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_variable_name")); + return static_cast(adios2::helper::ExceptionToError("adios2_variable_name")); } } -adios2_error adios2_variable_type(adios2_type *type, - const adios2_variable *variable) +adios2_error adios2_variable_type(adios2_type *type, const adios2_variable *variable) { try { adios2::helper::CheckForNullptr( - variable, - "for const adios2_variable, in call to adios2_variable_type"); + variable, "for const adios2_variable, in call to adios2_variable_type"); const adios2::core::VariableBase *variableBase = reinterpret_cast(variable); @@ -224,10 +199,10 @@ adios2_error adios2_variable_type(adios2_type *type, { *type = adios2_type_string; } -#define make_case(T) \ - else if (typeCpp == adios2::helper::GetDataType::Type>()) \ - { \ - *type = T; \ +#define make_case(T) \ + else if (typeCpp == adios2::helper::GetDataType::Type>()) \ + { \ + *type = T; \ } ADIOS2_FOREACH_C_TYPE_1ARG(make_case) #undef make_case @@ -239,19 +214,16 @@ adios2_error adios2_variable_type(adios2_type *type, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_variable_type")); + return static_cast(adios2::helper::ExceptionToError("adios2_variable_type")); } } -adios2_error adios2_variable_type_string(char *type, size_t *size, - const adios2_variable *variable) +adios2_error adios2_variable_type_string(char *type, size_t *size, const adios2_variable *variable) { try { - adios2::helper::CheckForNullptr(variable, - "for const adios2_variable, in call to " - "adios2_variable_type_string"); + adios2::helper::CheckForNullptr(variable, "for const adios2_variable, in call to " + "adios2_variable_type_string"); adios2::helper::CheckForNullptr( size, "for size_t* length, in call to adios2_variable_type_string"); @@ -266,19 +238,16 @@ adios2_error adios2_variable_type_string(char *type, size_t *size, } } -adios2_error adios2_variable_shapeid(adios2_shapeid *shapeid, - const adios2_variable *variable) +adios2_error adios2_variable_shapeid(adios2_shapeid *shapeid, const adios2_variable *variable) { try { - adios2::helper::CheckForNullptr(variable, - "for const adios2_variable, in call to " - "adios2_variable_shapeid"); + adios2::helper::CheckForNullptr(variable, "for const adios2_variable, in call to " + "adios2_variable_shapeid"); const adios2::core::VariableBase *variableBase = reinterpret_cast(variable); - *shapeid = adios2_ToShapeID(variableBase->m_ShapeID, - "in call to adios2_variable_shapeid"); + *shapeid = adios2_ToShapeID(variableBase->m_ShapeID, "in call to adios2_variable_shapeid"); return adios2_error_none; } catch (...) @@ -288,14 +257,12 @@ adios2_error adios2_variable_shapeid(adios2_shapeid *shapeid, } } -adios2_error adios2_variable_ndims(size_t *ndims, - const adios2_variable *variable) +adios2_error adios2_variable_ndims(size_t *ndims, const adios2_variable *variable) { try { - adios2::helper::CheckForNullptr(variable, - "for const adios2_variable, in call to " - "adios2_variable_ndims"); + adios2::helper::CheckForNullptr(variable, "for const adios2_variable, in call to " + "adios2_variable_ndims"); const adios2::core::VariableBase *variableBase = reinterpret_cast(variable); *ndims = variableBase->m_Count.size(); @@ -303,19 +270,16 @@ adios2_error adios2_variable_ndims(size_t *ndims, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_variable_ndims")); + return static_cast(adios2::helper::ExceptionToError("adios2_variable_ndims")); } } -adios2_error adios2_variable_shape(size_t *shape, - const adios2_variable *variable) +adios2_error adios2_variable_shape(size_t *shape, const adios2_variable *variable) { try { - adios2::helper::CheckForNullptr(variable, - "for const adios2_variable, in call to " - "adios2_variable_shape"); + adios2::helper::CheckForNullptr(variable, "for const adios2_variable, in call to " + "adios2_variable_shape"); adios2::helper::CheckForNullptr(shape, "for size_t* shape, in call to " "adios2_variable_shape"); @@ -327,14 +291,13 @@ adios2_error adios2_variable_shape(size_t *shape, { // not supported } -#define declare_template_instantiation(T) \ - else if (typeCpp == adios2::helper::GetDataType()) \ - { \ - const adios2::core::Variable *variable = \ - dynamic_cast *>(variableBase); \ - const adios2::Dims shapeCpp = \ - variable->Shape(adios2::EngineCurrentStep); \ - std::copy(shapeCpp.begin(), shapeCpp.end(), shape); \ +#define declare_template_instantiation(T) \ + else if (typeCpp == adios2::helper::GetDataType()) \ + { \ + const adios2::core::Variable *variable = \ + dynamic_cast *>(variableBase); \ + const adios2::Dims shapeCpp = variable->Shape(adios2::EngineCurrentStep); \ + std::copy(shapeCpp.begin(), shapeCpp.end(), shape); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -343,44 +306,36 @@ adios2_error adios2_variable_shape(size_t *shape, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_variable_shape")); + return static_cast(adios2::helper::ExceptionToError("adios2_variable_shape")); } } -adios2_error adios2_variable_start(size_t *start, - const adios2_variable *variable) +adios2_error adios2_variable_start(size_t *start, const adios2_variable *variable) { try { - adios2::helper::CheckForNullptr(variable, - "for const adios2_variable, in call to " - "adios2_variable_start"); + adios2::helper::CheckForNullptr(variable, "for const adios2_variable, in call to " + "adios2_variable_start"); const adios2::core::VariableBase *variableBase = reinterpret_cast(variable); - std::copy(variableBase->m_Start.begin(), variableBase->m_Start.end(), - start); + std::copy(variableBase->m_Start.begin(), variableBase->m_Start.end(), start); return adios2_error_none; } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_variable_shape")); + return static_cast(adios2::helper::ExceptionToError("adios2_variable_shape")); } } -adios2_error adios2_variable_count(size_t *count, - const adios2_variable *variable) +adios2_error adios2_variable_count(size_t *count, const adios2_variable *variable) { try { - adios2::helper::CheckForNullptr(variable, - "for const adios2_variable, in call to " - "adios2_variable_count"); - adios2::helper::CheckForNullptr(count, - "for const adios2_count, in call to " - "adios2_variable_count"); + adios2::helper::CheckForNullptr(variable, "for const adios2_variable, in call to " + "adios2_variable_count"); + adios2::helper::CheckForNullptr(count, "for const adios2_count, in call to " + "adios2_variable_count"); const adios2::core::VariableBase *variableBase = reinterpret_cast(variable); @@ -390,13 +345,13 @@ adios2_error adios2_variable_count(size_t *count, { // not supported } -#define declare_template_instantiation(T) \ - else if (typeCpp == adios2::helper::GetDataType()) \ - { \ - const adios2::core::Variable *variable = \ - dynamic_cast *>(variableBase); \ - const adios2::Dims countCpp = variable->Count(); \ - std::copy(countCpp.begin(), countCpp.end(), count); \ +#define declare_template_instantiation(T) \ + else if (typeCpp == adios2::helper::GetDataType()) \ + { \ + const adios2::core::Variable *variable = \ + dynamic_cast *>(variableBase); \ + const adios2::Dims countCpp = variable->Count(); \ + std::copy(countCpp.begin(), countCpp.end(), count); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -405,19 +360,16 @@ adios2_error adios2_variable_count(size_t *count, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_variable_count")); + return static_cast(adios2::helper::ExceptionToError("adios2_variable_count")); } } -adios2_error adios2_variable_steps_start(size_t *steps_start, - const adios2_variable *variable) +adios2_error adios2_variable_steps_start(size_t *steps_start, const adios2_variable *variable) { try { - adios2::helper::CheckForNullptr(variable, - "for const adios2_variable, in call to " - "adios2_variable_steps_start"); + adios2::helper::CheckForNullptr(variable, "for const adios2_variable, in call to " + "adios2_variable_steps_start"); const adios2::core::VariableBase *variableBase = reinterpret_cast(variable); *steps_start = variableBase->m_AvailableStepsStart; @@ -430,14 +382,12 @@ adios2_error adios2_variable_steps_start(size_t *steps_start, } } -adios2_error adios2_variable_steps(size_t *steps, - const adios2_variable *variable) +adios2_error adios2_variable_steps(size_t *steps, const adios2_variable *variable) { try { - adios2::helper::CheckForNullptr(variable, - "for const adios2_variable, in call to " - "adios2_variable_steps"); + adios2::helper::CheckForNullptr(variable, "for const adios2_variable, in call to " + "adios2_variable_steps"); const adios2::core::VariableBase *variableBase = reinterpret_cast(variable); *steps = variableBase->m_AvailableStepsCount; @@ -445,19 +395,16 @@ adios2_error adios2_variable_steps(size_t *steps, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_variable_steps")); + return static_cast(adios2::helper::ExceptionToError("adios2_variable_steps")); } } -adios2_error adios2_selection_size(size_t *size, - const adios2_variable *variable) +adios2_error adios2_selection_size(size_t *size, const adios2_variable *variable) { try { - adios2::helper::CheckForNullptr(variable, - "for adios2_variable, in call to " - "adios2_selection_size"); + adios2::helper::CheckForNullptr(variable, "for adios2_variable, in call to " + "adios2_selection_size"); const adios2::core::VariableBase *variableBase = reinterpret_cast(variable); @@ -467,12 +414,12 @@ adios2_error adios2_selection_size(size_t *size, { // not supported } -#define declare_template_instantiation(T) \ - else if (typeCpp == adios2::helper::GetDataType()) \ - { \ - const adios2::core::Variable *variable = \ - dynamic_cast *>(variableBase); \ - *size = variable->SelectionSize(); \ +#define declare_template_instantiation(T) \ + else if (typeCpp == adios2::helper::GetDataType()) \ + { \ + const adios2::core::Variable *variable = \ + dynamic_cast *>(variableBase); \ + *size = variable->SelectionSize(); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -481,21 +428,17 @@ adios2_error adios2_selection_size(size_t *size, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_selection_size")); + return static_cast(adios2::helper::ExceptionToError("adios2_selection_size")); } } -adios2_error adios2_add_operation(size_t *operation_index, - adios2_variable *variable, - adios2_operator *op, const char *key, - const char *value) +adios2_error adios2_add_operation(size_t *operation_index, adios2_variable *variable, + adios2_operator *op, const char *key, const char *value) { try { - adios2::helper::CheckForNullptr(variable, - "for adios2_variable, in call to " - "adios2_add_operation"); + adios2::helper::CheckForNullptr(variable, "for adios2_variable, in call to " + "adios2_add_operation"); adios2::helper::CheckForNullptr(op, "for adios2_operator, in call to " "adios2_add_operation"); @@ -508,8 +451,7 @@ adios2_error adios2_add_operation(size_t *operation_index, adios2::core::VariableBase *variableBase = reinterpret_cast(variable); - auto *opCpp = - reinterpret_cast *>(op); + auto *opCpp = reinterpret_cast *>(op); auto params = adios2::Params{{key, value}}; @@ -524,20 +466,17 @@ adios2_error adios2_add_operation(size_t *operation_index, } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_add_operation")); + return static_cast(adios2::helper::ExceptionToError("adios2_add_operation")); } } -adios2_error adios2_set_operation_parameter(adios2_variable *variable, - const size_t operation_id, +adios2_error adios2_set_operation_parameter(adios2_variable *variable, const size_t operation_id, const char *key, const char *value) { try { - adios2::helper::CheckForNullptr(variable, - "for adios2_variable, in call to " - "adios2_set_operation_parameter"); + adios2::helper::CheckForNullptr(variable, "for adios2_variable, in call to " + "adios2_set_operation_parameter"); adios2::core::VariableBase *variableBase = reinterpret_cast(variable); @@ -555,9 +494,8 @@ adios2_error adios2_remove_operations(adios2_variable *variable) { try { - adios2::helper::CheckForNullptr(variable, - "for adios2_variable, in call to " - "adios2_remove_operations"); + adios2::helper::CheckForNullptr(variable, "for adios2_variable, in call to " + "adios2_remove_operations"); adios2::core::VariableBase *variableBase = reinterpret_cast(variable); variableBase->RemoveOperations(); @@ -574,11 +512,9 @@ adios2_error adios2_variable_min(void *min, const adios2_variable *variable) { try { - adios2::helper::CheckForNullptr(variable, - "for adios2_variable, in call " - "to adios2_variable_min"); - adios2::helper::CheckForNullptr( - min, "for void* min, in call to adios2_variable_min"); + adios2::helper::CheckForNullptr(variable, "for adios2_variable, in call " + "to adios2_variable_min"); + adios2::helper::CheckForNullptr(min, "for void* min, in call to adios2_variable_min"); const adios2::core::VariableBase *variableBase = reinterpret_cast(variable); @@ -588,13 +524,13 @@ adios2_error adios2_variable_min(void *min, const adios2_variable *variable) { // not supported } -#define declare_template_instantiation(T) \ - else if (type == adios2::helper::GetDataType()) \ - { \ - T *minT = reinterpret_cast(min); \ - const adios2::core::Variable *variableT = \ - dynamic_cast *>(variableBase); \ - *minT = variableT->Min(adios2::EngineCurrentStep); \ +#define declare_template_instantiation(T) \ + else if (type == adios2::helper::GetDataType()) \ + { \ + T *minT = reinterpret_cast(min); \ + const adios2::core::Variable *variableT = \ + dynamic_cast *>(variableBase); \ + *minT = variableT->Min(adios2::EngineCurrentStep); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -602,8 +538,7 @@ adios2_error adios2_variable_min(void *min, const adios2_variable *variable) } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_variable_min")); + return static_cast(adios2::helper::ExceptionToError("adios2_variable_min")); } } @@ -611,11 +546,9 @@ adios2_error adios2_variable_max(void *max, const adios2_variable *variable) { try { - adios2::helper::CheckForNullptr(variable, - "for adios2_variable, in call " - "to adios2_variable_max"); - adios2::helper::CheckForNullptr( - max, "for void* max, in call to adios2_variable_max"); + adios2::helper::CheckForNullptr(variable, "for adios2_variable, in call " + "to adios2_variable_max"); + adios2::helper::CheckForNullptr(max, "for void* max, in call to adios2_variable_max"); const adios2::core::VariableBase *variableBase = reinterpret_cast(variable); @@ -625,13 +558,13 @@ adios2_error adios2_variable_max(void *max, const adios2_variable *variable) { // not supported } -#define declare_template_instantiation(T) \ - else if (type == adios2::helper::GetDataType()) \ - { \ - T *maxT = reinterpret_cast(max); \ - const adios2::core::Variable *variableT = \ - dynamic_cast *>(variableBase); \ - *maxT = variableT->Max(adios2::EngineCurrentStep); \ +#define declare_template_instantiation(T) \ + else if (type == adios2::helper::GetDataType()) \ + { \ + T *maxT = reinterpret_cast(max); \ + const adios2::core::Variable *variableT = \ + dynamic_cast *>(variableBase); \ + *maxT = variableT->Max(adios2::EngineCurrentStep); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -639,8 +572,7 @@ adios2_error adios2_variable_max(void *max, const adios2_variable *variable) } catch (...) { - return static_cast( - adios2::helper::ExceptionToError("adios2_variable_max")); + return static_cast(adios2::helper::ExceptionToError("adios2_variable_max")); } } diff --git a/bindings/C/adios2/c/adios2_c_variable.h b/bindings/C/adios2/c/adios2_c_variable.h index 75ee704206..165e5881f2 100644 --- a/bindings/C/adios2/c/adios2_c_variable.h +++ b/bindings/C/adios2/c/adios2_c_variable.h @@ -27,8 +27,7 @@ extern "C" { * @param shape new shape dimensions array * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_set_shape(adios2_variable *variable, const size_t ndims, - const size_t *shape); +adios2_error adios2_set_shape(adios2_variable *variable, const size_t ndims, const size_t *shape); /** * Read mode only. Required for reading local variables. For Global Arrays it @@ -40,8 +39,7 @@ adios2_error adios2_set_shape(adios2_variable *variable, const size_t ndims, * inspected with bpls -D variableName * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_set_block_selection(adios2_variable *variable, - const size_t block_id); +adios2_error adios2_set_block_selection(adios2_variable *variable, const size_t block_id); /** * Set new start and count dimensions @@ -70,10 +68,8 @@ adios2_error adios2_set_selection(adios2_variable *variable, const size_t ndims, * variable count = {Ny,Nx}, then memory_count = {Ny+2,Nx+2} * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_set_memory_selection(adios2_variable *variable, - const size_t ndims, - const size_t *memory_start, - const size_t *memory_count); +adios2_error adios2_set_memory_selection(adios2_variable *variable, const size_t ndims, + const size_t *memory_start, const size_t *memory_count); /** * Set new step selection using step_start and step_count. Used mostly for @@ -83,8 +79,7 @@ adios2_error adios2_set_memory_selection(adios2_variable *variable, * @param step_count number of steps to read from step start * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_set_step_selection(adios2_variable *variable, - const size_t step_start, +adios2_error adios2_set_step_selection(adios2_variable *variable, const size_t step_start, const size_t step_count); /** @@ -98,8 +93,7 @@ adios2_error adios2_set_step_selection(adios2_variable *variable, * @param variable handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_variable_name(char *name, size_t *size, - const adios2_variable *variable); +adios2_error adios2_variable_name(char *name, size_t *size, const adios2_variable *variable); /** * Retrieve variable type @@ -107,8 +101,7 @@ adios2_error adios2_variable_name(char *name, size_t *size, * @param variable handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_variable_type(adios2_type *type, - const adios2_variable *variable); +adios2_error adios2_variable_type(adios2_type *type, const adios2_variable *variable); /** * Retrieve variable type in string form "char", "unsigned long", etc. @@ -121,8 +114,7 @@ adios2_error adios2_variable_type(adios2_type *type, * @param variable handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_variable_type_string(char *type, size_t *size, - const adios2_variable *variable); +adios2_error adios2_variable_type_string(char *type, size_t *size, const adios2_variable *variable); /** * Retrieve variable shapeid @@ -130,8 +122,7 @@ adios2_error adios2_variable_type_string(char *type, size_t *size, * @param variable handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_variable_shapeid(adios2_shapeid *shapeid, - const adios2_variable *variable); +adios2_error adios2_variable_shapeid(adios2_shapeid *shapeid, const adios2_variable *variable); /** * Retrieve current variable number of dimensions @@ -139,8 +130,7 @@ adios2_error adios2_variable_shapeid(adios2_shapeid *shapeid, * @param variable handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_variable_ndims(size_t *ndims, - const adios2_variable *variable); +adios2_error adios2_variable_ndims(size_t *ndims, const adios2_variable *variable); /** * Retrieve current variable shape @@ -148,8 +138,7 @@ adios2_error adios2_variable_ndims(size_t *ndims, * @param variable handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_variable_shape(size_t *shape, - const adios2_variable *variable); +adios2_error adios2_variable_shape(size_t *shape, const adios2_variable *variable); /** * Retrieve current variable start @@ -157,8 +146,7 @@ adios2_error adios2_variable_shape(size_t *shape, * @param variable handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_variable_start(size_t *start, - const adios2_variable *variable); +adios2_error adios2_variable_start(size_t *start, const adios2_variable *variable); /** * Retrieve current variable start @@ -166,8 +154,7 @@ adios2_error adios2_variable_start(size_t *start, * @param variable handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_variable_count(size_t *count, - const adios2_variable *variable); +adios2_error adios2_variable_count(size_t *count, const adios2_variable *variable); /** * Read API, get available steps start from available steps count @@ -177,8 +164,7 @@ adios2_error adios2_variable_count(size_t *count, * @param variable handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_variable_steps_start(size_t *steps_start, - const adios2_variable *variable); +adios2_error adios2_variable_steps_start(size_t *steps_start, const adios2_variable *variable); /** * Read API, get available steps count from available steps count @@ -187,8 +173,7 @@ adios2_error adios2_variable_steps_start(size_t *steps_start, * @param variable handler * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_variable_steps(size_t *steps, - const adios2_variable *variable); +adios2_error adios2_variable_steps(size_t *steps, const adios2_variable *variable); /** * Returns the minimum required allocation (in number of elements of a certain @@ -198,8 +183,7 @@ adios2_error adios2_variable_steps(size_t *steps, * @param variable handler for which data size will be inspected from * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_selection_size(size_t *size, - const adios2_variable *variable); +adios2_error adios2_selection_size(size_t *size, const adios2_variable *variable); /** * Adds an operation to a variable (e.g. compression) @@ -211,10 +195,8 @@ adios2_error adios2_selection_size(size_t *size, * @param value parameter value supported by the operation, empty if none * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_add_operation(size_t *operation_index, - adios2_variable *variable, - adios2_operator *op, const char *key, - const char *value); +adios2_error adios2_add_operation(size_t *operation_index, adios2_variable *variable, + adios2_operator *op, const char *key, const char *value); /** * Adds a parameter to an operation created with adios2_add_operation @@ -224,8 +206,7 @@ adios2_error adios2_add_operation(size_t *operation_index, * @param value parameter value supported by the operation * @return adios2_error 0: success, see enum adios2_error for errors */ -adios2_error adios2_set_operation_parameter(adios2_variable *variable, - const size_t operation_id, +adios2_error adios2_set_operation_parameter(adios2_variable *variable, const size_t operation_id, const char *key, const char *value); /** diff --git a/bindings/CXX11/adios2/cxx11/ADIOS.cpp b/bindings/CXX11/adios2/cxx11/ADIOS.cpp index 1cff5be4cb..5dc00cc797 100644 --- a/bindings/CXX11/adios2/cxx11/ADIOS.cpp +++ b/bindings/CXX11/adios2/cxx11/ADIOS.cpp @@ -62,8 +62,7 @@ void ADIOS::ExitComputationBlock() noexcept Operator ADIOS::DefineOperator(const std::string name, const std::string type, const Params ¶meters) { - CheckPointer("for operator name " + name + - ", in call to ADIOS::DefineOperator"); + CheckPointer("for operator name " + name + ", in call to ADIOS::DefineOperator"); auto op = &m_ADIOS->DefineOperator(name, type, parameters); return Operator(op->first, &op->second); } diff --git a/bindings/CXX11/adios2/cxx11/ADIOS.h b/bindings/CXX11/adios2/cxx11/ADIOS.h index fddc335ad1..01b6834df6 100644 --- a/bindings/CXX11/adios2/cxx11/ADIOS.h +++ b/bindings/CXX11/adios2/cxx11/ADIOS.h @@ -43,8 +43,7 @@ class ADIOS public: template - using enable_if_bool = - typename std::enable_if::value, bool>::type; + using enable_if_bool = typename std::enable_if::value, bool>::type; #if ADIOS2_USE_MPI /** @@ -75,8 +74,7 @@ class ADIOS * treat all arrays column-major * e.g. adios2::ADIOS("", comm, "Fortran", false); */ - ADIOS(const std::string &configFile, MPI_Comm comm, - const std::string &hostLanguage); + ADIOS(const std::string &configFile, MPI_Comm comm, const std::string &hostLanguage); #endif @@ -143,8 +141,7 @@ class ADIOS * @exception std::invalid_argument if IO with unique name is already * declared */ - IO DeclareIO(const std::string name, - const ArrayOrdering ArrayOrder = ArrayOrdering::Auto); + IO DeclareIO(const std::string name, const ArrayOrdering ArrayOrder = ArrayOrdering::Auto); /** * Retrieve an existing IO object previously created with DeclareIO. @@ -180,8 +177,7 @@ class ADIOS * operator due to missing dependency or unsupported type */ template - Operator DefineOperator(const std::string name, - const std::function &function, + Operator DefineOperator(const std::string name, const std::function &function, const Params ¶meters = Params()); /** @@ -228,25 +224,23 @@ class ADIOS void CheckPointer(const std::string hint); /* CallBack1 signature */ -#define declare_type(T) \ - Operator DefineCallBack( \ - const std::string name, \ - const std::function &function, \ +#define declare_type(T) \ + Operator DefineCallBack( \ + const std::string name, \ + const std::function &function, \ const Params ¶meters); ADIOS2_FOREACH_TYPE_1ARG(declare_type) #undef declare_type /* CallBack2 signature */ - Operator DefineCallBack( - const std::string name, - const std::function &function, - const Params ¶meters); + Operator + DefineCallBack(const std::string name, + const std::function &function, + const Params ¶meters); }; } // end namespace adios2 diff --git a/bindings/CXX11/adios2/cxx11/ADIOSMPI.cpp b/bindings/CXX11/adios2/cxx11/ADIOSMPI.cpp index 541a57753d..62afa773cb 100644 --- a/bindings/CXX11/adios2/cxx11/ADIOSMPI.cpp +++ b/bindings/CXX11/adios2/cxx11/ADIOSMPI.cpp @@ -13,17 +13,14 @@ namespace adios2 { ADIOS::ADIOS(const std::string &configFile, MPI_Comm comm) -: m_ADIOS(std::make_shared(configFile, helper::CommDupMPI(comm), - "C++")) +: m_ADIOS(std::make_shared(configFile, helper::CommDupMPI(comm), "C++")) { } ADIOS::ADIOS(MPI_Comm comm) : ADIOS("", comm) {} -ADIOS::ADIOS(const std::string &configFile, MPI_Comm comm, - const std::string &hostLanguage) -: m_ADIOS(std::make_shared(configFile, helper::CommDupMPI(comm), - hostLanguage)) +ADIOS::ADIOS(const std::string &configFile, MPI_Comm comm, const std::string &hostLanguage) +: m_ADIOS(std::make_shared(configFile, helper::CommDupMPI(comm), hostLanguage)) { } diff --git a/bindings/CXX11/adios2/cxx11/Attribute.cpp b/bindings/CXX11/adios2/cxx11/Attribute.cpp index 0627a8c21a..df64fac4f7 100644 --- a/bindings/CXX11/adios2/cxx11/Attribute.cpp +++ b/bindings/CXX11/adios2/cxx11/Attribute.cpp @@ -17,65 +17,60 @@ namespace adios2 { -#define declare_type(T) \ - \ - template <> \ - Attribute::Attribute(core::Attribute *attribute) \ - : m_Attribute(attribute) \ - { \ - } \ - \ - template <> \ - Attribute::operator bool() const noexcept \ - { \ - return (m_Attribute == nullptr) ? false : true; \ - } \ - \ - template <> \ - std::string Attribute::Name() const \ - { \ - helper::CheckForNullptr(m_Attribute, \ - "in call to Attribute::Name()"); \ - return m_Attribute->m_Name; \ - } \ - \ - template <> \ - std::string Attribute::Type() const \ - { \ - helper::CheckForNullptr(m_Attribute, \ - "in call to Attribute::Type()"); \ - return ToString(m_Attribute->m_Type); \ - } \ - \ - template <> \ - std::vector Attribute::Data() const \ - { \ - helper::CheckForNullptr(m_Attribute, \ - "in call to Attribute::Data()"); \ - \ - if (m_Attribute->m_IsSingleValue) \ - { \ - return std::vector{m_Attribute->m_DataSingleValue}; \ - } \ - else \ - { \ - return helper::NewVectorType(m_Attribute->m_DataArray); \ - } \ - } \ - \ - template <> \ - bool Attribute::IsValue() const \ - { \ - helper::CheckForNullptr(m_Attribute, \ - "in call to Attribute::IsValue()"); \ - return m_Attribute->m_IsSingleValue; \ - } \ - \ - template <> \ - std::string ToString(const Attribute &attribute) \ - { \ - return std::string("Attribute<") + attribute.Type() + ">(Name: \"" + \ - attribute.Name() + "\")"; \ +#define declare_type(T) \ + \ + template <> \ + Attribute::Attribute(core::Attribute *attribute) : m_Attribute(attribute) \ + { \ + } \ + \ + template <> \ + Attribute::operator bool() const noexcept \ + { \ + return (m_Attribute == nullptr) ? false : true; \ + } \ + \ + template <> \ + std::string Attribute::Name() const \ + { \ + helper::CheckForNullptr(m_Attribute, "in call to Attribute::Name()"); \ + return m_Attribute->m_Name; \ + } \ + \ + template <> \ + std::string Attribute::Type() const \ + { \ + helper::CheckForNullptr(m_Attribute, "in call to Attribute::Type()"); \ + return ToString(m_Attribute->m_Type); \ + } \ + \ + template <> \ + std::vector Attribute::Data() const \ + { \ + helper::CheckForNullptr(m_Attribute, "in call to Attribute::Data()"); \ + \ + if (m_Attribute->m_IsSingleValue) \ + { \ + return std::vector{m_Attribute->m_DataSingleValue}; \ + } \ + else \ + { \ + return helper::NewVectorType(m_Attribute->m_DataArray); \ + } \ + } \ + \ + template <> \ + bool Attribute::IsValue() const \ + { \ + helper::CheckForNullptr(m_Attribute, "in call to Attribute::IsValue()"); \ + return m_Attribute->m_IsSingleValue; \ + } \ + \ + template <> \ + std::string ToString(const Attribute &attribute) \ + { \ + return std::string("Attribute<") + attribute.Type() + ">(Name: \"" + attribute.Name() + \ + "\")"; \ } ADIOS2_FOREACH_ATTRIBUTE_TYPE_1ARG(declare_type) diff --git a/bindings/CXX11/adios2/cxx11/Engine.cpp b/bindings/CXX11/adios2/cxx11/Engine.cpp index 748af4e041..c37d8e1624 100644 --- a/bindings/CXX11/adios2/cxx11/Engine.cpp +++ b/bindings/CXX11/adios2/cxx11/Engine.cpp @@ -21,8 +21,7 @@ namespace adios2 void Engine::CheckMemorySpace(MemorySpace variableMem, MemorySpace bufferMem) { if (variableMem != MemorySpace::Detect && variableMem != bufferMem) - helper::Throw("CXX-Bindings", "Engine", "Put", - "Memory space mismatch"); + helper::Throw("CXX-Bindings", "Engine", "Put", "Memory space mismatch"); } #endif @@ -68,8 +67,7 @@ bool Engine::BetweenStepPairs() StepStatus Engine::BeginStep(const StepMode mode, const float timeoutSeconds) { - helper::CheckForNullptr( - m_Engine, "in call to Engine::BeginStep(const StepMode, const float)"); + helper::CheckForNullptr(m_Engine, "in call to Engine::BeginStep(const StepMode, const float)"); return m_Engine->BeginStep(mode, timeoutSeconds); } @@ -99,15 +97,13 @@ void Engine::PerformGets() void Engine::LockWriterDefinitions() { - helper::CheckForNullptr(m_Engine, - "in call to Engine::LockWriterDefinitions"); + helper::CheckForNullptr(m_Engine, "in call to Engine::LockWriterDefinitions"); m_Engine->LockWriterDefinitions(); } void Engine::LockReaderSelections() { - helper::CheckForNullptr(m_Engine, - "in call to Engine::LockReaderSelections"); + helper::CheckForNullptr(m_Engine, "in call to Engine::LockReaderSelections"); m_Engine->LockReaderSelections(); } @@ -146,34 +142,27 @@ Engine::Engine(core::Engine *engine) : m_Engine(engine) {} void Engine::Put(VariableNT &variable, const void *data, const Mode launch) { helper::CheckForNullptr(m_Engine, "in call to Engine::Put"); - helper::CheckForNullptr(variable.m_Variable, - "for variable in call to Engine::Put"); -#define declare_type(T) \ - if (variable.m_Variable->m_Type == helper::GetDataType()) \ - { \ - m_Engine->Put( \ - *reinterpret_cast *>(variable.m_Variable), \ - reinterpret_cast(data), launch); \ + helper::CheckForNullptr(variable.m_Variable, "for variable in call to Engine::Put"); +#define declare_type(T) \ + if (variable.m_Variable->m_Type == helper::GetDataType()) \ + { \ + m_Engine->Put(*reinterpret_cast *>(variable.m_Variable), \ + reinterpret_cast(data), launch); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type else if (variable.m_Variable->m_Type == DataType::Struct) { - m_Engine->Put( - *reinterpret_cast(variable.m_Variable), - data, launch); + m_Engine->Put(*reinterpret_cast(variable.m_Variable), data, launch); } } -#define declare_type(T) \ - void Engine::Put(VariableNT &variable, const T &datum, const Mode launch) \ - { \ - helper::CheckForNullptr(m_Engine, "in call to Engine::Put"); \ - helper::CheckForNullptr(variable.m_Variable, \ - "for variable in call to Engine::Put"); \ - m_Engine->Put( \ - *reinterpret_cast *>(variable.m_Variable), \ - datum, launch); \ +#define declare_type(T) \ + void Engine::Put(VariableNT &variable, const T &datum, const Mode launch) \ + { \ + helper::CheckForNullptr(m_Engine, "in call to Engine::Put"); \ + helper::CheckForNullptr(variable.m_Variable, "for variable in call to Engine::Put"); \ + m_Engine->Put(*reinterpret_cast *>(variable.m_Variable), datum, launch); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -181,57 +170,47 @@ ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) void Engine::Get(VariableNT &variable, void *data, const Mode launch) { adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Get"); - adios2::helper::CheckForNullptr(variable.m_Variable, - "for variable in call to Engine::Get"); -#define declare_type(T) \ - if (variable.m_Variable->m_Type == helper::GetDataType()) \ - { \ - m_Engine->Get( \ - *reinterpret_cast *>(variable.m_Variable), \ - reinterpret_cast(data), launch); \ + adios2::helper::CheckForNullptr(variable.m_Variable, "for variable in call to Engine::Get"); +#define declare_type(T) \ + if (variable.m_Variable->m_Type == helper::GetDataType()) \ + { \ + m_Engine->Get(*reinterpret_cast *>(variable.m_Variable), \ + reinterpret_cast(data), launch); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type else if (variable.m_Variable->m_Type == DataType::Struct) { - m_Engine->Get( - *reinterpret_cast(variable.m_Variable), - data, launch); + m_Engine->Get(*reinterpret_cast(variable.m_Variable), data, launch); } } -#define declare_type(T) \ - void Engine::Get(VariableNT &variable, T &datum, const Mode launch) \ - { \ - adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Get"); \ - adios2::helper::CheckForNullptr( \ - variable.m_Variable, "for variable in call to Engine::Get"); \ - m_Engine->Get( \ - *reinterpret_cast *>(variable.m_Variable), \ - datum, launch); \ +#define declare_type(T) \ + void Engine::Get(VariableNT &variable, T &datum, const Mode launch) \ + { \ + adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Get"); \ + adios2::helper::CheckForNullptr(variable.m_Variable, \ + "for variable in call to Engine::Get"); \ + m_Engine->Get(*reinterpret_cast *>(variable.m_Variable), datum, launch); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type -#define declare_type(T) \ - void Engine::Get(VariableNT &variable, std::vector &datum, \ - const Mode launch) \ - { \ - adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Get"); \ - adios2::helper::CheckForNullptr( \ - variable.m_Variable, "for variable in call to Engine::Get"); \ - m_Engine->Get( \ - *reinterpret_cast *>(variable.m_Variable), \ - datum, launch); \ +#define declare_type(T) \ + void Engine::Get(VariableNT &variable, std::vector &datum, const Mode launch) \ + { \ + adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Get"); \ + adios2::helper::CheckForNullptr(variable.m_Variable, \ + "for variable in call to Engine::Get"); \ + m_Engine->Get(*reinterpret_cast *>(variable.m_Variable), datum, launch); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type -#define declare_template_instantiation(T) \ - \ - template typename Variable::Span Engine::Put(Variable, const bool, \ - const T &); \ - template typename Variable::Span Engine::Put(Variable); \ +#define declare_template_instantiation(T) \ + \ + template typename Variable::Span Engine::Put(Variable, const bool, const T &); \ + template typename Variable::Span Engine::Put(Variable); \ template void Engine::Get(Variable, T **) const; ADIOS2_FOREACH_PRIMITIVE_TYPE_1ARG(declare_template_instantiation) @@ -243,13 +222,11 @@ std::vector Engine::BlocksInfo(const VariableNT &variable, std::vector ret; if (variable.m_Variable->m_Type == DataType::Struct) { - adios2::helper::CheckForNullptr( - m_Engine, "for Engine in call to Engine::BlocksInfo"); - adios2::helper::CheckForNullptr( - variable.m_Variable, "for variable in call to Engine::BlocksInfo"); + adios2::helper::CheckForNullptr(m_Engine, "for Engine in call to Engine::BlocksInfo"); + adios2::helper::CheckForNullptr(variable.m_Variable, + "for variable in call to Engine::BlocksInfo"); auto blocksInfo = m_Engine->BlocksInfoStruct( - *reinterpret_cast(variable.m_Variable), - step); + *reinterpret_cast(variable.m_Variable), step); for (const auto &b : blocksInfo) { ret.emplace_back(); @@ -262,31 +239,29 @@ std::vector Engine::BlocksInfo(const VariableNT &variable, br.IsValue = b.IsValue; } } -#define declare_type(T) \ - else if (variable.m_Variable->m_Type == helper::GetDataType()) \ - { \ - auto blocksInfoT = \ - BlocksInfo(Variable(reinterpret_cast *>( \ - variable.m_Variable)), \ - step); \ - for (const auto &b : blocksInfoT) \ - { \ - ret.emplace_back(); \ - auto &br = ret.back(); \ - br.Start = b.Start; \ - br.Count = b.Count; \ - br.WriterID = b.WriterID; \ - br.Step = b.Step; \ - br.IsReverseDims = b.IsReverseDims; \ - br.IsValue = b.IsValue; \ - } \ +#define declare_type(T) \ + else if (variable.m_Variable->m_Type == helper::GetDataType()) \ + { \ + auto blocksInfoT = BlocksInfo( \ + Variable(reinterpret_cast *>(variable.m_Variable)), step); \ + for (const auto &b : blocksInfoT) \ + { \ + ret.emplace_back(); \ + auto &br = ret.back(); \ + br.Start = b.Start; \ + br.Count = b.Count; \ + br.WriterID = b.WriterID; \ + br.Step = b.Step; \ + br.IsReverseDims = b.IsReverseDims; \ + br.IsValue = b.IsValue; \ + } \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type else { - helper::Throw("bindings::CXX11", "Engine", - "BlocksInfo", "invalid data type"); + helper::Throw("bindings::CXX11", "Engine", "BlocksInfo", + "invalid data type"); } return ret; } @@ -297,11 +272,10 @@ Engine::AllStepsBlocksInfo(const VariableNT &variable) const std::map> ret; if (variable.m_Variable->m_Type == DataType::Struct) { - adios2::helper::CheckForNullptr( - m_Engine, "for Engine in call to Engine::AllStepsBlocksInfo"); - adios2::helper::CheckForNullptr( - variable.m_Variable, - "for variable in call to Engine::AllStepsBlocksInfo"); + adios2::helper::CheckForNullptr(m_Engine, + "for Engine in call to Engine::AllStepsBlocksInfo"); + adios2::helper::CheckForNullptr(variable.m_Variable, + "for variable in call to Engine::AllStepsBlocksInfo"); auto blocksInfo = m_Engine->AllStepsBlocksInfoStruct( *reinterpret_cast(variable.m_Variable)); for (const auto &bv : blocksInfo) @@ -320,81 +294,75 @@ Engine::AllStepsBlocksInfo(const VariableNT &variable) const } } } -#define declare_type(T) \ - else if (variable.m_Variable->m_Type == helper::GetDataType()) \ - { \ - auto blocksInfoT = AllStepsBlocksInfo(Variable( \ - reinterpret_cast *>(variable.m_Variable))); \ - for (const auto &bv : blocksInfoT) \ - { \ - auto &bvr = ret[bv.first]; \ - for (const auto &b : bv.second) \ - { \ - bvr.emplace_back(); \ - auto &br = bvr.back(); \ - br.Start = b.Start; \ - br.Count = b.Count; \ - br.WriterID = b.WriterID; \ - br.Step = b.Step; \ - br.IsReverseDims = b.IsReverseDims; \ - br.IsValue = b.IsValue; \ - } \ - } \ +#define declare_type(T) \ + else if (variable.m_Variable->m_Type == helper::GetDataType()) \ + { \ + auto blocksInfoT = AllStepsBlocksInfo( \ + Variable(reinterpret_cast *>(variable.m_Variable))); \ + for (const auto &bv : blocksInfoT) \ + { \ + auto &bvr = ret[bv.first]; \ + for (const auto &b : bv.second) \ + { \ + bvr.emplace_back(); \ + auto &br = bvr.back(); \ + br.Start = b.Start; \ + br.Count = b.Count; \ + br.WriterID = b.WriterID; \ + br.Step = b.Step; \ + br.IsReverseDims = b.IsReverseDims; \ + br.IsValue = b.IsValue; \ + } \ + } \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type else { - helper::Throw("bindings::CXX11", "Engine", - "AllStepsBlocksInfo", + helper::Throw("bindings::CXX11", "Engine", "AllStepsBlocksInfo", "invalid data type"); } return ret; } -#define declare_template_instantiation(T) \ - template void Engine::Put(Variable, const T *, const Mode); \ - template void Engine::Put(const std::string &, const T *, const Mode); \ - template void Engine::Put(Variable, const T &, const Mode); \ - template void Engine::Put(const std::string &, const T &, const Mode); \ - \ - template void Engine::Get(Variable, T *, const Mode); \ - template void Engine::Get(const std::string &, T *, const Mode); \ - template void Engine::Get(Variable, T &, const Mode); \ - template void Engine::Get(const std::string &, T &, const Mode); \ - \ - template void Engine::Get(Variable, std::vector &, const Mode); \ - template void Engine::Get(const std::string &, std::vector &, \ - const Mode); \ - \ - template void Engine::Get( \ - Variable, typename Variable::Info & info, const Mode); \ - template void Engine::Get( \ - const std::string &, typename Variable::Info &info, const Mode); \ - \ - template std::map::Info>> \ - Engine::AllStepsBlocksInfo(const Variable variable) const; \ - \ - template std::vector::Info> Engine::BlocksInfo( \ - const Variable variable, const size_t step) const; \ - \ - template std::vector Engine::GetAbsoluteSteps( \ - const Variable variable) const; +#define declare_template_instantiation(T) \ + template void Engine::Put(Variable, const T *, const Mode); \ + template void Engine::Put(const std::string &, const T *, const Mode); \ + template void Engine::Put(Variable, const T &, const Mode); \ + template void Engine::Put(const std::string &, const T &, const Mode); \ + \ + template void Engine::Get(Variable, T *, const Mode); \ + template void Engine::Get(const std::string &, T *, const Mode); \ + template void Engine::Get(Variable, T &, const Mode); \ + template void Engine::Get(const std::string &, T &, const Mode); \ + \ + template void Engine::Get(Variable, std::vector &, const Mode); \ + template void Engine::Get(const std::string &, std::vector &, const Mode); \ + \ + template void Engine::Get(Variable, typename Variable::Info & info, const Mode); \ + template void Engine::Get(const std::string &, typename Variable::Info &info, \ + const Mode); \ + \ + template std::map::Info>> Engine::AllStepsBlocksInfo( \ + const Variable variable) const; \ + \ + template std::vector::Info> Engine::BlocksInfo( \ + const Variable variable, const size_t step) const; \ + \ + template std::vector Engine::GetAbsoluteSteps(const Variable variable) const; ADIOS2_FOREACH_TYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation size_t Engine::DebugGetDataBufferSize() const { - helper::CheckForNullptr(m_Engine, - "in call to Engine::DebugGetDataBufferSize"); + helper::CheckForNullptr(m_Engine, "in call to Engine::DebugGetDataBufferSize"); return m_Engine->DebugGetDataBufferSize(); } std::string ToString(const Engine &engine) { - return std::string("Engine(Name: \"" + engine.Name() + "\", Type: \"" + - engine.Type() + "\")"); + return std::string("Engine(Name: \"" + engine.Name() + "\", Type: \"" + engine.Type() + "\")"); } } // end namespace adios2 diff --git a/bindings/CXX11/adios2/cxx11/Engine.h b/bindings/CXX11/adios2/cxx11/Engine.h index 1043315e91..533912758a 100644 --- a/bindings/CXX11/adios2/cxx11/Engine.h +++ b/bindings/CXX11/adios2/cxx11/Engine.h @@ -94,8 +94,7 @@ class Engine * @param timeoutSeconds * @return current step status */ - StepStatus BeginStep(const StepMode mode, - const float timeoutSeconds = -1.f); + StepStatus BeginStep(const StepMode mode, const float timeoutSeconds = -1.f); /** * Inspect current logical step @@ -117,8 +116,7 @@ class Engine * @return span to variable data in engine internal buffer */ template - typename Variable::Span Put(Variable variable, const bool initialize, - const T &value); + typename Variable::Span Put(Variable variable, const bool initialize, const T &value); /** * Put signature that provides access to an internal engine buffer (decided @@ -145,11 +143,9 @@ class Engine * @exception std::invalid_argument for invalid variable or nullptr data */ template - void Put(Variable variable, const T *data, - const Mode launch = Mode::Deferred); + void Put(Variable variable, const T *data, const Mode launch = Mode::Deferred); - void Put(VariableNT &variable, const void *data, - const Mode launch = Mode::Deferred); + void Put(VariableNT &variable, const void *data, const Mode launch = Mode::Deferred); /** * Put data associated with a Variable in the Engine @@ -167,8 +163,7 @@ class Engine * @exception std::invalid_argument if variable not found or nullptr data */ template - void Put(const std::string &variableName, const T *data, - const Mode launch = Mode::Deferred); + void Put(const std::string &variableName, const T *data, const Mode launch = Mode::Deferred); /** * Put data associated with a Variable in the Engine @@ -181,12 +176,10 @@ class Engine * @exception std::invalid_argument if variable is invalid or nullptr &datum */ template - void Put(Variable variable, const T &datum, - const Mode launch = Mode::Deferred); + void Put(Variable variable, const T &datum, const Mode launch = Mode::Deferred); -#define declare_type(T) \ - void Put(VariableNT &variable, const T &datum, \ - const Mode launch = Mode::Deferred); +#define declare_type(T) \ + void Put(VariableNT &variable, const T &datum, const Mode launch = Mode::Deferred); ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -203,8 +196,7 @@ class Engine * @exception std::invalid_argument if variable is invalid or nullptr &datum */ template - void Put(const std::string &variableName, const T &datum, - const Mode launch = Mode::Deferred); + void Put(const std::string &variableName, const T &datum, const Mode launch = Mode::Deferred); /** * The next two Put functions are used to accept a variable, and an @@ -216,10 +208,8 @@ class Engine * always sync */ template >::value>::type> - void Put(Variable variable, U const &data, - const Mode launch = Mode::Deferred) + class = typename std::enable_if>::value>::type> + void Put(Variable variable, U const &data, const Mode launch = Mode::Deferred) { auto bufferView = static_cast>(data); #ifdef ADIOS2_HAVE_GPU_SUPPORT @@ -258,8 +248,7 @@ class Engine template void Get(Variable variable, T *data, const Mode launch = Mode::Deferred); - void Get(VariableNT &variable, void *data, - const Mode launch = Mode::Deferred); + void Get(VariableNT &variable, void *data, const Mode launch = Mode::Deferred); /** * Get data associated with a Variable from the Engine. Overloaded version @@ -281,8 +270,7 @@ class Engine * doesn't exist in IO) or nullptr data */ template - void Get(const std::string &variableName, T *data, - const Mode launch = Mode::Deferred); + void Get(const std::string &variableName, T *data, const Mode launch = Mode::Deferred); /** * Get single value data associated with a Variable from the Engine @@ -294,18 +282,15 @@ class Engine * @exception std::invalid_argument if variable is invalid or nullptr &datum */ template - void Get(Variable variable, T &datum, - const Mode launch = Mode::Deferred); + void Get(Variable variable, T &datum, const Mode launch = Mode::Deferred); -#define declare_type(T) \ - void Get(VariableNT &variable, T &datum, \ - const Mode launch = Mode::Deferred); +#define declare_type(T) \ + void Get(VariableNT &variable, T &datum, const Mode launch = Mode::Deferred); ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type -#define declare_type(T) \ - void Get(VariableNT &variable, std::vector &datum, \ - const Mode launch = Mode::Deferred); +#define declare_type(T) \ + void Get(VariableNT &variable, std::vector &datum, const Mode launch = Mode::Deferred); ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -321,8 +306,7 @@ class Engine * doesn't exist in IO) or nullptr data */ template - void Get(const std::string &variableName, T &datum, - const Mode launch = Mode::Deferred); + void Get(const std::string &variableName, T &datum, const Mode launch = Mode::Deferred); /** * Get data associated with a Variable from the Engine. @@ -341,8 +325,7 @@ class Engine * @exception std::invalid_argument for invalid variable */ template - void Get(Variable variable, std::vector &dataV, - const Mode launch = Mode::Deferred); + void Get(Variable variable, std::vector &dataV, const Mode launch = Mode::Deferred); /** * Get data associated with a Variable from the Engine. @@ -430,10 +413,8 @@ class Engine * always sync */ template >::value>::type> - void Get(Variable variable, U const &data, - const Mode launch = Mode::Deferred) + class = typename std::enable_if>::value>::type> + void Get(Variable variable, U const &data, const Mode launch = Mode::Deferred) { auto adios_data = static_cast>(data); auto mem_space = adios_data.memory_space(); @@ -499,11 +480,10 @@ class Engine * found it returns an empty vector */ template - std::vector::Info> - BlocksInfo(const Variable variable, const size_t step) const; + std::vector::Info> BlocksInfo(const Variable variable, + const size_t step) const; - std::vector BlocksInfo(const VariableNT &variable, - const size_t step) const; + std::vector BlocksInfo(const VariableNT &variable, const size_t step) const; /** * Get the absolute steps of a variable in a file. This is for diff --git a/bindings/CXX11/adios2/cxx11/Engine.tcc b/bindings/CXX11/adios2/cxx11/Engine.tcc index e7bcebd917..4f4a5962fa 100644 --- a/bindings/CXX11/adios2/cxx11/Engine.tcc +++ b/bindings/CXX11/adios2/cxx11/Engine.tcc @@ -24,16 +24,15 @@ namespace { template static std::vector::Info> -ToBlocksInfo(const std::vector::IOType>::BPInfo> &coreBlocksInfo) +ToBlocksInfo(const std::vector::IOType>::BPInfo> + &coreBlocksInfo) { using IOType = typename TypeInfo::IOType; std::vector::Info> blocksInfo; blocksInfo.reserve(coreBlocksInfo.size()); - for (const typename core::Variable::BPInfo &coreBlockInfo : - coreBlocksInfo) + for (const typename core::Variable::BPInfo &coreBlockInfo : coreBlocksInfo) { typename Variable::Info blockInfo; // doesn't work because coreBlockInfo is transient. @@ -62,20 +61,16 @@ ToBlocksInfo(const std::vector -typename Variable::Span Engine::Put(Variable variable, - const bool initialize, const T &value) +typename Variable::Span Engine::Put(Variable variable, const bool initialize, const T &value) { using IOType = typename TypeInfo::IOType; - adios2::helper::CheckForNullptr(m_Engine, - "for Engine in call to Engine::Array"); + adios2::helper::CheckForNullptr(m_Engine, "for Engine in call to Engine::Array"); - adios2::helper::CheckForNullptr(variable.m_Variable, - "for variable in call to Engine::Array"); + adios2::helper::CheckForNullptr(variable.m_Variable, "for variable in call to Engine::Array"); typename Variable::Span::CoreSpan *coreSpan = - reinterpret_cast::Span::CoreSpan *>( - &m_Engine->Put(*variable.m_Variable, initialize, - reinterpret_cast(value))); + reinterpret_cast::Span::CoreSpan *>(&m_Engine->Put( + *variable.m_Variable, initialize, reinterpret_cast(value))); return typename Variable::Span(coreSpan); } @@ -83,11 +78,9 @@ typename Variable::Span Engine::Put(Variable variable, template typename Variable::Span Engine::Put(Variable variable) { - adios2::helper::CheckForNullptr(m_Engine, - "for Engine in call to Engine::Array"); + adios2::helper::CheckForNullptr(m_Engine, "for Engine in call to Engine::Array"); - adios2::helper::CheckForNullptr(variable.m_Variable, - "for variable in call to Engine::Array"); + adios2::helper::CheckForNullptr(variable.m_Variable, "for variable in call to Engine::Array"); typename Variable::Span::CoreSpan *coreSpan = reinterpret_cast::Span::CoreSpan *>( @@ -101,15 +94,12 @@ void Engine::Put(Variable variable, const T *data, const Mode launch) { using IOType = typename TypeInfo::IOType; adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Put"); - adios2::helper::CheckForNullptr(variable.m_Variable, - "for variable in call to Engine::Put"); - m_Engine->Put(*variable.m_Variable, reinterpret_cast(data), - launch); + adios2::helper::CheckForNullptr(variable.m_Variable, "for variable in call to Engine::Put"); + m_Engine->Put(*variable.m_Variable, reinterpret_cast(data), launch); } template -void Engine::Put(const std::string &variableName, const T *data, - const Mode launch) +void Engine::Put(const std::string &variableName, const T *data, const Mode launch) { using IOType = typename TypeInfo::IOType; adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Put"); @@ -121,20 +111,16 @@ void Engine::Put(Variable variable, const T &datum, const Mode launch) { using IOType = typename TypeInfo::IOType; adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Put"); - adios2::helper::CheckForNullptr(variable.m_Variable, - "for variable in call to Engine::Put"); - m_Engine->Put(*variable.m_Variable, reinterpret_cast(datum), - launch); + adios2::helper::CheckForNullptr(variable.m_Variable, "for variable in call to Engine::Put"); + m_Engine->Put(*variable.m_Variable, reinterpret_cast(datum), launch); } template -void Engine::Put(const std::string &variableName, const T &datum, - const Mode launch) +void Engine::Put(const std::string &variableName, const T &datum, const Mode launch) { using IOType = typename TypeInfo::IOType; adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Put"); - m_Engine->Put(variableName, reinterpret_cast(datum), - launch); + m_Engine->Put(variableName, reinterpret_cast(datum), launch); } template @@ -142,10 +128,8 @@ void Engine::Get(Variable variable, T *data, const Mode launch) { using IOType = typename TypeInfo::IOType; adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Get"); - adios2::helper::CheckForNullptr(variable.m_Variable, - "for variable in call to Engine::Get"); - m_Engine->Get(*variable.m_Variable, reinterpret_cast(data), - launch); + adios2::helper::CheckForNullptr(variable.m_Variable, "for variable in call to Engine::Get"); + m_Engine->Get(*variable.m_Variable, reinterpret_cast(data), launch); } template @@ -161,14 +145,12 @@ void Engine::Get(Variable variable, T &datum, const Mode /*launch*/) { using IOType = typename TypeInfo::IOType; adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Get"); - adios2::helper::CheckForNullptr(variable.m_Variable, - "for variable in call to Engine::Get"); + adios2::helper::CheckForNullptr(variable.m_Variable, "for variable in call to Engine::Get"); m_Engine->Get(*variable.m_Variable, reinterpret_cast(datum)); } template -void Engine::Get(const std::string &variableName, T &datum, - const Mode /*launch*/) +void Engine::Get(const std::string &variableName, T &datum, const Mode /*launch*/) { using IOType = typename TypeInfo::IOType; adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Get"); @@ -179,39 +161,31 @@ template void Engine::Get(Variable variable, std::vector &dataV, const Mode launch) { using IOType = typename TypeInfo::IOType; - adios2::helper::CheckForNullptr( - m_Engine, "in call to Engine::Get with std::vector argument"); - adios2::helper::CheckForNullptr(variable.m_Variable, - "for variable in call to Engine::Get"); - m_Engine->Get(*variable.m_Variable, - reinterpret_cast &>(dataV), launch); + adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Get with std::vector argument"); + adios2::helper::CheckForNullptr(variable.m_Variable, "for variable in call to Engine::Get"); + m_Engine->Get(*variable.m_Variable, reinterpret_cast &>(dataV), launch); } template -void Engine::Get(const std::string &variableName, std::vector &dataV, - const Mode launch) +void Engine::Get(const std::string &variableName, std::vector &dataV, const Mode launch) { using IOType = typename TypeInfo::IOType; - adios2::helper::CheckForNullptr( - m_Engine, "in call to Engine::Get with std::vector argument"); - m_Engine->Get(variableName, reinterpret_cast &>(dataV), - launch); + adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Get with std::vector argument"); + m_Engine->Get(variableName, reinterpret_cast &>(dataV), launch); } template -void Engine::Get(Variable variable, typename Variable::Info &info, - const Mode launch) +void Engine::Get(Variable variable, typename Variable::Info &info, const Mode launch) { adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Get"); - adios2::helper::CheckForNullptr(variable.m_Variable, - "for variable in call to Engine::Get"); + adios2::helper::CheckForNullptr(variable.m_Variable, "for variable in call to Engine::Get"); info.m_Info = reinterpret_cast::Info::CoreInfo *>( m_Engine->Get(*variable.m_Variable, launch)); } template -void Engine::Get(const std::string &variableName, - typename Variable::Info &info, const Mode launch) +void Engine::Get(const std::string &variableName, typename Variable::Info &info, + const Mode launch) { using IOType = typename TypeInfo::IOType; adios2::helper::CheckForNullptr(m_Engine, "in call to Engine::Get"); @@ -224,13 +198,11 @@ void Engine::Get(Variable variable, T **data) const { if (m_Engine->m_EngineType != "InlineReader") { - throw std::domain_error( - "Get calls with T** are only supported with the InlineReader."); + throw std::domain_error("Get calls with T** are only supported with the InlineReader."); } using IOType = typename TypeInfo::IOType; - m_Engine->Get(*variable.m_Variable, - reinterpret_cast(data)); + m_Engine->Get(*variable.m_Variable, reinterpret_cast(data)); return; } @@ -239,12 +211,10 @@ std::map::Info>> Engine::AllStepsBlocksInfo(const Variable variable) const { using IOType = typename TypeInfo::IOType; - adios2::helper::CheckForNullptr( - m_Engine, "for Engine in call to Engine::AllStepsBlocksInfo"); + adios2::helper::CheckForNullptr(m_Engine, "for Engine in call to Engine::AllStepsBlocksInfo"); - adios2::helper::CheckForNullptr( - variable.m_Variable, - "for variable in call to Engine::AllStepsBlocksInfo"); + adios2::helper::CheckForNullptr(variable.m_Variable, + "for variable in call to Engine::AllStepsBlocksInfo"); try { @@ -256,17 +226,14 @@ Engine::AllStepsBlocksInfo(const Variable variable) const } const std::map::BPInfo>> - coreAllStepsBlockInfo = - m_Engine->AllStepsBlocksInfo(*variable.m_Variable); + coreAllStepsBlockInfo = m_Engine->AllStepsBlocksInfo(*variable.m_Variable); - std::map::Info>> - allStepsBlocksInfo; + std::map::Info>> allStepsBlocksInfo; for (const auto &pair : coreAllStepsBlockInfo) { const size_t step = pair.first; - const std::vector::BPInfo> - &coreBlocksInfo = pair.second; + const std::vector::BPInfo> &coreBlocksInfo = pair.second; allStepsBlocksInfo[step] = ToBlocksInfo(coreBlocksInfo); } @@ -280,29 +247,25 @@ Engine::AllStepsBlocksInfo(const Variable variable) const // of the Variable, and those could contain pointers to the Core Info structs, // enabling users of the Inline engine to do Info.Data() template -std::vector::Info> -Engine::BlocksInfo(const Variable variable, const size_t step) const +std::vector::Info> Engine::BlocksInfo(const Variable variable, + const size_t step) const { using IOType = typename TypeInfo::IOType; - adios2::helper::CheckForNullptr(m_Engine, - "for Engine in call to Engine::BlocksInfo"); + adios2::helper::CheckForNullptr(m_Engine, "for Engine in call to Engine::BlocksInfo"); - adios2::helper::CheckForNullptr( - variable.m_Variable, "for variable in call to Engine::BlocksInfo"); + adios2::helper::CheckForNullptr(variable.m_Variable, + "for variable in call to Engine::BlocksInfo"); - const auto minBlocksInfo = - m_Engine->MinBlocksInfo(*variable.m_Variable, step); + const auto minBlocksInfo = m_Engine->MinBlocksInfo(*variable.m_Variable, step); if (minBlocksInfo) { - std::vector::Info> Ret = - variable.ToBlocksInfoMin(minBlocksInfo); + std::vector::Info> Ret = variable.ToBlocksInfoMin(minBlocksInfo); delete minBlocksInfo; return Ret; } - const auto blocksInfo = - m_Engine->BlocksInfo(*variable.m_Variable, step); + const auto blocksInfo = m_Engine->BlocksInfo(*variable.m_Variable, step); return ToBlocksInfo(blocksInfo); } @@ -310,11 +273,9 @@ template std::vector Engine::GetAbsoluteSteps(const Variable variable) const { using IOType = typename TypeInfo::IOType; - adios2::helper::CheckForNullptr( - m_Engine, "for Engine in call to Engine::GetAbsoluteSteps"); - adios2::helper::CheckForNullptr( - variable.m_Variable, - "for variable in call to Engine::GetAbsoluteSteps"); + adios2::helper::CheckForNullptr(m_Engine, "for Engine in call to Engine::GetAbsoluteSteps"); + adios2::helper::CheckForNullptr(variable.m_Variable, + "for variable in call to Engine::GetAbsoluteSteps"); return m_Engine->GetAbsoluteSteps(*variable.m_Variable); } diff --git a/bindings/CXX11/adios2/cxx11/Group.cpp b/bindings/CXX11/adios2/cxx11/Group.cpp index a7220b4c2c..2919602264 100644 --- a/bindings/CXX11/adios2/cxx11/Group.cpp +++ b/bindings/CXX11/adios2/cxx11/Group.cpp @@ -21,18 +21,9 @@ Group Group::InquireGroup(std::string group_name) auto m = m_Group->InquireGroup(group_name); return Group(m); } -std::vector Group::AvailableVariables() -{ - return m_Group->AvailableVariables(); -} -std::vector Group::AvailableAttributes() -{ - return m_Group->AvailableAttributes(); -} -std::vector Group::AvailableGroups() -{ - return m_Group->AvailableGroups(); -} +std::vector Group::AvailableVariables() { return m_Group->AvailableVariables(); } +std::vector Group::AvailableAttributes() { return m_Group->AvailableAttributes(); } +std::vector Group::AvailableGroups() { return m_Group->AvailableGroups(); } std::string Group::InquirePath() { return m_Group->InquirePath(); } @@ -52,7 +43,7 @@ Group::~Group() = default; ; // Explicit declaration of the public template methods // Limits the types -#define declare_template_instantiation(T) \ +#define declare_template_instantiation(T) \ template Variable Group::InquireVariable(const std::string &); ADIOS2_FOREACH_TYPE_1ARG(declare_template_instantiation) diff --git a/bindings/CXX11/adios2/cxx11/Group.h b/bindings/CXX11/adios2/cxx11/Group.h index d54a39b75b..9d08f74c90 100644 --- a/bindings/CXX11/adios2/cxx11/Group.h +++ b/bindings/CXX11/adios2/cxx11/Group.h @@ -96,8 +96,7 @@ class Group * found */ template - Attribute InquireAttribute(const std::string &name, - const std::string &variableName = "", + Attribute InquireAttribute(const std::string &name, const std::string &variableName = "", const std::string separator = "/"); /** diff --git a/bindings/CXX11/adios2/cxx11/Group.tcc b/bindings/CXX11/adios2/cxx11/Group.tcc index 57966c0532..e5d067ac95 100644 --- a/bindings/CXX11/adios2/cxx11/Group.tcc +++ b/bindings/CXX11/adios2/cxx11/Group.tcc @@ -19,22 +19,19 @@ namespace adios2 template Variable Group::InquireVariable(const std::string &name) { - helper::CheckForNullptr(m_Group, "for variable name " + name + - ", in call to Group::InquireVariable"); - return Variable( - m_Group->InquireVariable::IOType>(name)); + helper::CheckForNullptr(m_Group, + "for variable name " + name + ", in call to Group::InquireVariable"); + return Variable(m_Group->InquireVariable::IOType>(name)); } template -Attribute Group::InquireAttribute(const std::string &name, - const std::string &variableName, +Attribute Group::InquireAttribute(const std::string &name, const std::string &variableName, const std::string separator) { using IOType = typename TypeInfo::IOType; - helper::CheckForNullptr(m_Group, "for attribute name " + name + - ", in call to IO::InquireAttribute"); - return Attribute( - m_Group->InquireAttribute(name, variableName, separator)); + helper::CheckForNullptr(m_Group, + "for attribute name " + name + ", in call to IO::InquireAttribute"); + return Attribute(m_Group->InquireAttribute(name, variableName, separator)); } } // end namespace adios2 diff --git a/bindings/CXX11/adios2/cxx11/IO.cpp b/bindings/CXX11/adios2/cxx11/IO.cpp index ebd6c5e850..8018c06d77 100644 --- a/bindings/CXX11/adios2/cxx11/IO.cpp +++ b/bindings/CXX11/adios2/cxx11/IO.cpp @@ -72,8 +72,8 @@ size_t IO::AddTransport(const std::string type, const Params ¶meters) return m_IO->AddTransport(type, parameters); } -void IO::SetTransportParameter(const size_t transportIndex, - const std::string key, const std::string value) +void IO::SetTransportParameter(const size_t transportIndex, const std::string key, + const std::string value) { helper::CheckForNullptr(m_IO, "in call to IO::SetTransportParameter"); m_IO->SetTransportParameter(transportIndex, key, value); @@ -105,14 +105,10 @@ void IO::RemoveAllAttributes() Engine IO::Open(const std::string &name, const Mode mode) { - helper::CheckForNullptr(m_IO, - "for engine " + name + ", in call to IO::Open"); + helper::CheckForNullptr(m_IO, "for engine " + name + ", in call to IO::Open"); return Engine(&m_IO->Open(name, mode)); } -Group IO::InquireGroup(char delimiter) -{ - return Group(&m_IO->CreateGroup(delimiter)); -}; +Group IO::InquireGroup(char delimiter) { return Group(&m_IO->CreateGroup(delimiter)); }; void IO::FlushAll() { helper::CheckForNullptr(m_IO, "in call to IO::FlushAll"); @@ -132,9 +128,9 @@ std::map IO::AvailableVariables(bool namesOnly) } } -std::map -IO::AvailableAttributes(const std::string &variableName, - const std::string separator, const bool fullNameKeys) +std::map IO::AvailableAttributes(const std::string &variableName, + const std::string separator, + const bool fullNameKeys) { helper::CheckForNullptr(m_IO, "in call to IO::AvailableAttributes"); return m_IO->GetAvailableAttributes(variableName, separator, fullNameKeys); @@ -152,8 +148,8 @@ std::string IO::AttributeType(const std::string &name) const return ToString(m_IO->InquireAttributeType(name)); } -void IO::AddOperation(const std::string &variable, - const std::string &operatorType, const Params ¶meters) +void IO::AddOperation(const std::string &variable, const std::string &operatorType, + const Params ¶meters) { helper::CheckForNullptr(m_IO, "in call to IO::AddOperation"); return m_IO->AddOperation(variable, operatorType, parameters); @@ -165,17 +161,15 @@ std::string IO::EngineType() const return m_IO->m_EngineType; } -VariableNT IO::DefineVariable(const DataType type, const std::string &name, - const Dims &shape, const Dims &start, - const Dims &count, const bool constantDims) +VariableNT IO::DefineVariable(const DataType type, const std::string &name, const Dims &shape, + const Dims &start, const Dims &count, const bool constantDims) { - helper::CheckForNullptr(m_IO, "for variable name " + name + - ", in call to IO::DefineVariable"); -#define declare_type(T) \ - if (ToString(type) == GetType()) \ - { \ - return VariableNT(&m_IO->DefineVariable::IOType>( \ - name, shape, start, count, constantDims)); \ + helper::CheckForNullptr(m_IO, "for variable name " + name + ", in call to IO::DefineVariable"); +#define declare_type(T) \ + if (ToString(type) == GetType()) \ + { \ + return VariableNT(&m_IO->DefineVariable::IOType>( \ + name, shape, start, count, constantDims)); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -187,32 +181,28 @@ VariableNT IO::DefineVariable(const DataType type, const std::string &name, StructDefinition IO::DefineStruct(const std::string &name, const size_t size) { - helper::CheckForNullptr(m_IO, "for struct name " + name + - ", in call to IO::DefineStruct"); + helper::CheckForNullptr(m_IO, "for struct name " + name + ", in call to IO::DefineStruct"); return StructDefinition(&m_IO->DefineStruct(name, size)); } -VariableNT IO::DefineStructVariable(const std::string &name, - const StructDefinition &def, - const Dims &shape, const Dims &start, - const Dims &count, const bool constantDims) +VariableNT IO::DefineStructVariable(const std::string &name, const StructDefinition &def, + const Dims &shape, const Dims &start, const Dims &count, + const bool constantDims) { - helper::CheckForNullptr(m_IO, "for variable name " + name + - ", in call to IO::DefineStructVariable"); - return VariableNT(&m_IO->DefineStructVariable( - name, *def.m_StructDefinition, shape, start, count, constantDims)); + helper::CheckForNullptr(m_IO, + "for variable name " + name + ", in call to IO::DefineStructVariable"); + return VariableNT(&m_IO->DefineStructVariable(name, *def.m_StructDefinition, shape, start, + count, constantDims)); } VariableNT IO::InquireVariable(const std::string &name) { - helper::CheckForNullptr(m_IO, "for variable name " + name + - ", in call to IO::InquireVariable"); + helper::CheckForNullptr(m_IO, "for variable name " + name + ", in call to IO::InquireVariable"); auto type = m_IO->InquireVariableType(name); -#define declare_type(T) \ - if (type == helper::GetDataType()) \ - { \ - return VariableNT( \ - m_IO->InquireVariable::IOType>(name)); \ +#define declare_type(T) \ + if (type == helper::GetDataType()) \ + { \ + return VariableNT(m_IO->InquireVariable::IOType>(name)); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -228,20 +218,18 @@ VariableNT IO::InquireVariable(const std::string &name) VariableNT IO::InquireStructVariable(const std::string &name) { - helper::CheckForNullptr(m_IO, "for variable name " + name + - ", in call to IO::InquireStructVariable"); + helper::CheckForNullptr(m_IO, + "for variable name " + name + ", in call to IO::InquireStructVariable"); return VariableNT(m_IO->InquireStructVariable(name)); } -VariableNT IO::InquireStructVariable(const std::string &name, - const StructDefinition def) +VariableNT IO::InquireStructVariable(const std::string &name, const StructDefinition def) { - helper::CheckForNullptr(m_IO, "for variable name " + name + - ", in call to IO::InquireStructVariable"); + helper::CheckForNullptr(m_IO, + "for variable name " + name + ", in call to IO::InquireStructVariable"); - return VariableNT( - m_IO->InquireStructVariable(name, *def.m_StructDefinition)); + return VariableNT(m_IO->InquireStructVariable(name, *def.m_StructDefinition)); } // PRIVATE @@ -249,34 +237,28 @@ IO::IO(core::IO *io) : m_IO(io) {} // Explicit declaration of the public template methods // Limits the types -#define declare_template_instantiation(T) \ - template Variable IO::DefineVariable(const std::string &, const Dims &, \ - const Dims &, const Dims &, \ - const bool); \ - \ +#define declare_template_instantiation(T) \ + template Variable IO::DefineVariable(const std::string &, const Dims &, const Dims &, \ + const Dims &, const bool); \ + \ template Variable IO::InquireVariable(const std::string &); ADIOS2_FOREACH_TYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation -#define declare_template_instantiation(T) \ - template Attribute IO::DefineAttribute( \ - const std::string &, const T *, const size_t, const std::string &, \ - const std::string, const bool); \ - \ - template Attribute IO::DefineAttribute(const std::string &, const T &, \ - const std::string &, \ - const std::string, const bool); \ - \ - template Attribute IO::InquireAttribute( \ - const std::string &, const std::string &, const std::string); +#define declare_template_instantiation(T) \ + template Attribute IO::DefineAttribute(const std::string &, const T *, const size_t, \ + const std::string &, const std::string, const bool); \ + \ + template Attribute IO::DefineAttribute(const std::string &, const T &, const std::string &, \ + const std::string, const bool); \ + \ + template Attribute IO::InquireAttribute(const std::string &, const std::string &, \ + const std::string); ADIOS2_FOREACH_ATTRIBUTE_TYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation -std::string ToString(const IO &io) -{ - return std::string("IO(Name: \"" + io.Name() + "\")"); -} +std::string ToString(const IO &io) { return std::string("IO(Name: \"" + io.Name() + "\")"); } } // end namespace adios2 diff --git a/bindings/CXX11/adios2/cxx11/IO.h b/bindings/CXX11/adios2/cxx11/IO.h index cb8a44a2e9..1702c769f4 100644 --- a/bindings/CXX11/adios2/cxx11/IO.h +++ b/bindings/CXX11/adios2/cxx11/IO.h @@ -134,8 +134,8 @@ class IO * @exception std::invalid_argument if transportIndex not valid, e.g. not a * handler from AddTransport. */ - void SetTransportParameter(const size_t transportIndex, - const std::string key, const std::string value); + void SetTransportParameter(const size_t transportIndex, const std::string key, + const std::string value); /** * Define a Variable object within IO @@ -148,25 +148,19 @@ class IO * @return Variable object */ template - Variable - DefineVariable(const std::string &name, const Dims &shape = Dims(), - const Dims &start = Dims(), const Dims &count = Dims(), - const bool constantDims = false); + Variable DefineVariable(const std::string &name, const Dims &shape = Dims(), + const Dims &start = Dims(), const Dims &count = Dims(), + const bool constantDims = false); VariableNT DefineVariable(const DataType type, const std::string &name, - const Dims &shape = Dims(), - const Dims &start = Dims(), - const Dims &count = Dims(), - const bool constantDims = false); + const Dims &shape = Dims(), const Dims &start = Dims(), + const Dims &count = Dims(), const bool constantDims = false); StructDefinition DefineStruct(const std::string &name, const size_t size); - VariableNT DefineStructVariable(const std::string &name, - const StructDefinition &def, - const Dims &shape = Dims(), - const Dims &start = Dims(), - const Dims &count = Dims(), - const bool constantDims = false); + VariableNT DefineStructVariable(const std::string &name, const StructDefinition &def, + const Dims &shape = Dims(), const Dims &start = Dims(), + const Dims &count = Dims(), const bool constantDims = false); /** * Retrieve a Variable object within current IO object @@ -181,8 +175,7 @@ class IO VariableNT InquireStructVariable(const std::string &name); - VariableNT InquireStructVariable(const std::string &name, - const StructDefinition def); + VariableNT InquireStructVariable(const std::string &name, const StructDefinition def); /** * @brief Define attribute inside io. Array input version @@ -201,8 +194,7 @@ class IO * Variable) is already defined */ template - Attribute DefineAttribute(const std::string &name, const T *data, - const size_t size, + Attribute DefineAttribute(const std::string &name, const T *data, const size_t size, const std::string &variableName = "", const std::string separator = "/", const bool allowModification = false); @@ -223,10 +215,9 @@ class IO * Variable) is already defined */ template - Attribute DefineAttribute(const std::string &name, const T &value, - const std::string &variableName = "", - const std::string separator = "/", - const bool allowModification = false); + Attribute + DefineAttribute(const std::string &name, const T &value, const std::string &variableName = "", + const std::string separator = "/", const bool allowModification = false); /** * @brief Retrieve an existing attribute @@ -241,8 +232,7 @@ class IO * Attribute is not found */ template - Attribute InquireAttribute(const std::string &name, - const std::string &variableName = "", + Attribute InquireAttribute(const std::string &name, const std::string &variableName = "", const std::string separator = "/"); /** @@ -342,10 +332,9 @@ class IO * string value: attribute info value * */ - std::map - AvailableAttributes(const std::string &variableName = "", - const std::string separator = "/", - const bool fullNameKeys = false); + std::map AvailableAttributes(const std::string &variableName = "", + const std::string separator = "/", + const bool fullNameKeys = false); /** * Inspects variable type. This function can be used in conjunction with @@ -372,8 +361,7 @@ class IO * @param parameters key/value settings particular to the IO, not to * be confused by op own parameters */ - void AddOperation(const std::string &variable, - const std::string &operatorType, + void AddOperation(const std::string &variable, const std::string &operatorType, const Params ¶meters = Params()); /** diff --git a/bindings/CXX11/adios2/cxx11/IO.tcc b/bindings/CXX11/adios2/cxx11/IO.tcc index ede52d25d6..aad6912dc9 100644 --- a/bindings/CXX11/adios2/cxx11/IO.tcc +++ b/bindings/CXX11/adios2/cxx11/IO.tcc @@ -18,64 +18,53 @@ namespace adios2 { template -Variable IO::DefineVariable(const std::string &name, const Dims &shape, - const Dims &start, const Dims &count, - const bool constantDims) +Variable IO::DefineVariable(const std::string &name, const Dims &shape, const Dims &start, + const Dims &count, const bool constantDims) { - helper::CheckForNullptr(m_IO, "for variable name " + name + - ", in call to IO::DefineVariable"); - return Variable(&m_IO->DefineVariable::IOType>( - name, shape, start, count, constantDims)); + helper::CheckForNullptr(m_IO, "for variable name " + name + ", in call to IO::DefineVariable"); + return Variable(&m_IO->DefineVariable::IOType>(name, shape, start, + count, constantDims)); } template Variable IO::InquireVariable(const std::string &name) { - helper::CheckForNullptr(m_IO, "for variable name " + name + - ", in call to IO::InquireVariable"); - return Variable( - m_IO->InquireVariable::IOType>(name)); + helper::CheckForNullptr(m_IO, "for variable name " + name + ", in call to IO::InquireVariable"); + return Variable(m_IO->InquireVariable::IOType>(name)); } template -Attribute -IO::DefineAttribute(const std::string &name, const T *data, const size_t size, - const std::string &variableName, - const std::string separator, const bool allowModification) +Attribute IO::DefineAttribute(const std::string &name, const T *data, const size_t size, + const std::string &variableName, const std::string separator, + const bool allowModification) { using IOType = typename TypeInfo::IOType; - helper::CheckForNullptr(m_IO, "for attribute name " + name + - " and variable name " + variableName + - ", in call to IO::DefineAttribute"); - return Attribute(&m_IO->DefineAttribute( - name, reinterpret_cast(data), size, variableName, - separator, allowModification)); + helper::CheckForNullptr(m_IO, "for attribute name " + name + " and variable name " + + variableName + ", in call to IO::DefineAttribute"); + return Attribute(&m_IO->DefineAttribute(name, reinterpret_cast(data), size, + variableName, separator, allowModification)); } template Attribute IO::DefineAttribute(const std::string &name, const T &value, - const std::string &variableName, - const std::string separator, + const std::string &variableName, const std::string separator, const bool allowModification) { using IOType = typename TypeInfo::IOType; - helper::CheckForNullptr(m_IO, "for attribute name " + name + - ", in call to IO::DefineAttribute"); - return Attribute( - &m_IO->DefineAttribute(name, reinterpret_cast(value), - variableName, separator, allowModification)); + helper::CheckForNullptr(m_IO, + "for attribute name " + name + ", in call to IO::DefineAttribute"); + return Attribute(&m_IO->DefineAttribute(name, reinterpret_cast(value), + variableName, separator, allowModification)); } template -Attribute IO::InquireAttribute(const std::string &name, - const std::string &variableName, +Attribute IO::InquireAttribute(const std::string &name, const std::string &variableName, const std::string separator) { using IOType = typename TypeInfo::IOType; - helper::CheckForNullptr(m_IO, "for attribute name " + name + - ", in call to IO::InquireAttribute"); - return Attribute( - m_IO->InquireAttribute(name, variableName, separator)); + helper::CheckForNullptr(m_IO, + "for attribute name " + name + ", in call to IO::InquireAttribute"); + return Attribute(m_IO->InquireAttribute(name, variableName, separator)); } } // end namespace adios2 diff --git a/bindings/CXX11/adios2/cxx11/IOMPI.cpp b/bindings/CXX11/adios2/cxx11/IOMPI.cpp index 2baa4935ff..68cf7ed863 100644 --- a/bindings/CXX11/adios2/cxx11/IOMPI.cpp +++ b/bindings/CXX11/adios2/cxx11/IOMPI.cpp @@ -16,8 +16,7 @@ namespace adios2 Engine IO::Open(const std::string &name, const Mode mode, MPI_Comm comm) { - helper::CheckForNullptr(m_IO, - "for engine " + name + ", in call to IO::Open"); + helper::CheckForNullptr(m_IO, "for engine " + name + ", in call to IO::Open"); return Engine(&m_IO->Open(name, mode, helper::CommDupMPI(comm))); } diff --git a/bindings/CXX11/adios2/cxx11/KokkosView.h b/bindings/CXX11/adios2/cxx11/KokkosView.h index e83560bd14..20fa32ae03 100644 --- a/bindings/CXX11/adios2/cxx11/KokkosView.h +++ b/bindings/CXX11/adios2/cxx11/KokkosView.h @@ -42,8 +42,8 @@ class AdiosView> AdiosView(Kokkos::View v) { pointer = v.data(); - mem_space = detail::memspace_kokkos_to_adios2< - typename Kokkos::View::memory_space>::value; + mem_space = + detail::memspace_kokkos_to_adios2::memory_space>::value; } data_type const *data() const { return pointer; } diff --git a/bindings/CXX11/adios2/cxx11/Operator.cpp b/bindings/CXX11/adios2/cxx11/Operator.cpp index 46931280e6..80169466a3 100644 --- a/bindings/CXX11/adios2/cxx11/Operator.cpp +++ b/bindings/CXX11/adios2/cxx11/Operator.cpp @@ -33,9 +33,6 @@ Params &Operator::Parameters() const } // PRIVATE -Operator::Operator(const std::string &type, Params *params) -: m_Parameters(params), m_Type(type) -{ -} +Operator::Operator(const std::string &type, Params *params) : m_Parameters(params), m_Type(type) {} } // end namespace adios2 diff --git a/bindings/CXX11/adios2/cxx11/Query.cpp b/bindings/CXX11/adios2/cxx11/Query.cpp index 73acb3a149..23bbd8c6c6 100644 --- a/bindings/CXX11/adios2/cxx11/Query.cpp +++ b/bindings/CXX11/adios2/cxx11/Query.cpp @@ -7,17 +7,15 @@ namespace adios2 { QueryWorker::QueryWorker(const std::string &configFile, adios2::Engine &reader) { - adios2::query::Worker *m = - adios2::query::GetWorker(configFile, reader.m_Engine); + adios2::query::Worker *m = adios2::query::GetWorker(configFile, reader.m_Engine); if (m == nullptr) throw std::invalid_argument("ERROR: unable to construct query. "); m_Worker = std::make_shared(std::move(*m)); delete m; } -void QueryWorker::GetResultCoverage( - adios2::Box &outputSelection, - std::vector> &touched_blocks) +void QueryWorker::GetResultCoverage(adios2::Box &outputSelection, + std::vector> &touched_blocks) { if (m_Worker) return m_Worker->GetResultCoverage(outputSelection, touched_blocks); diff --git a/bindings/CXX11/adios2/cxx11/Query.h b/bindings/CXX11/adios2/cxx11/Query.h index 0872124aa9..a4dd046d38 100644 --- a/bindings/CXX11/adios2/cxx11/Query.h +++ b/bindings/CXX11/adios2/cxx11/Query.h @@ -28,9 +28,8 @@ class QueryWorker public: QueryWorker(const std::string &configFile, adios2::Engine &engine); - void - GetResultCoverage(adios2::Box &, - std::vector> &touched_blocks); + void GetResultCoverage(adios2::Box &, + std::vector> &touched_blocks); private: std::shared_ptr m_Worker; diff --git a/bindings/CXX11/adios2/cxx11/Types.cpp b/bindings/CXX11/adios2/cxx11/Types.cpp index 9303e8a6a6..6d3beaed5b 100644 --- a/bindings/CXX11/adios2/cxx11/Types.cpp +++ b/bindings/CXX11/adios2/cxx11/Types.cpp @@ -13,8 +13,7 @@ namespace adios2 { -#define declare_template_instantiation(T) \ - template std::string GetType() noexcept; +#define declare_template_instantiation(T) template std::string GetType() noexcept; ADIOS2_FOREACH_TYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation diff --git a/bindings/CXX11/adios2/cxx11/Variable.cpp b/bindings/CXX11/adios2/cxx11/Variable.cpp index b58d92a517..cc1944fae9 100644 --- a/bindings/CXX11/adios2/cxx11/Variable.cpp +++ b/bindings/CXX11/adios2/cxx11/Variable.cpp @@ -17,254 +17,234 @@ namespace adios2 { -#define declare_type(T) \ - \ - template <> \ - Variable::Variable(core::Variable *variable) \ - : m_Variable(variable) \ - { \ - } \ - \ - template <> \ - Variable::operator bool() const noexcept \ - { \ - return (m_Variable == nullptr) ? false : true; \ - } \ - \ - template <> \ - void Variable::SetMemorySpace(const MemorySpace mem) \ - { \ - m_Variable->SetMemorySpace(mem); \ - } \ - \ - template <> \ - MemorySpace Variable::GetMemorySpace() \ - { \ - return m_Variable->m_MemSpace; \ - } \ - \ - template <> \ - void Variable::SetShape(const Dims &shape) \ - { \ - helper::CheckForNullptr(m_Variable, \ - "in call to Variable::SetShape"); \ - m_Variable->SetShape(shape); \ - } \ - \ - template <> \ - void Variable::SetBlockSelection(const size_t blockID) \ - { \ - helper::CheckForNullptr(m_Variable, \ - "in call to Variable::SetBlockSelection"); \ - m_Variable->SetBlockSelection(blockID); \ - } \ - \ - template <> \ - void Variable::SetSelection(const Box &selection) \ - { \ - helper::CheckForNullptr(m_Variable, \ - "in call to Variable::SetSelection"); \ - m_Variable->SetSelection(selection); \ - } \ - \ - template <> \ - void Variable::SetMemorySelection(const Box &memorySelection) \ - { \ - helper::CheckForNullptr(m_Variable, \ - "in call to Variable::SetMemorySelection"); \ - m_Variable->SetMemorySelection(memorySelection); \ - } \ - \ - template <> \ - void Variable::SetStepSelection(const Box &stepSelection) \ - { \ - helper::CheckForNullptr(m_Variable, \ - "in call to Variable::SetStepSelection"); \ - m_Variable->SetStepSelection(stepSelection); \ - } \ - \ - template <> \ - size_t Variable::SelectionSize() const \ - { \ - helper::CheckForNullptr(m_Variable, \ - "in call to Variable::SelectionSize"); \ - return m_Variable->SelectionSize(); \ - } \ - \ - template <> \ - std::string Variable::Name() const \ - { \ - helper::CheckForNullptr(m_Variable, "in call to Variable::Name"); \ - return m_Variable->m_Name; \ - } \ - \ - template <> \ - std::string Variable::Type() const \ - { \ - helper::CheckForNullptr(m_Variable, "in call to Variable::Type"); \ - return ToString(m_Variable->m_Type); \ - } \ - template <> \ - size_t Variable::Sizeof() const \ - { \ - helper::CheckForNullptr(m_Variable, "in call to Variable::Sizeof"); \ - return m_Variable->m_ElementSize; \ - } \ - \ - template <> \ - adios2::ShapeID Variable::ShapeID() const \ - { \ - helper::CheckForNullptr(m_Variable, \ - "in call to Variable::ShapeID"); \ - return m_Variable->m_ShapeID; \ - } \ - \ - template <> \ - Dims Variable::Shape(const size_t step) const \ - { \ - helper::CheckForNullptr(m_Variable, "in call to Variable::Shape"); \ - return m_Variable->Shape(step); \ - } \ - \ - template <> \ - Dims Variable::Start() const \ - { \ - helper::CheckForNullptr(m_Variable, "in call to Variable::Start"); \ - return m_Variable->m_Start; \ - } \ - \ - template <> \ - Dims Variable::Count() const \ - { \ - helper::CheckForNullptr(m_Variable, "in call to Variable::Count"); \ - return m_Variable->Count(); \ - } \ - \ - template <> \ - size_t Variable::Steps() const \ - { \ - helper::CheckForNullptr(m_Variable, "in call to Variable::Steps"); \ - return m_Variable->m_AvailableStepsCount; \ - } \ - \ - template <> \ - size_t Variable::StepsStart() const \ - { \ - helper::CheckForNullptr(m_Variable, \ - "in call to Variable::StepsStart"); \ - return m_Variable->m_AvailableStepsStart; \ - } \ - \ - template <> \ - size_t Variable::BlockID() const \ - { \ - helper::CheckForNullptr(m_Variable, \ - "in call to Variable::BlockID"); \ - return m_Variable->m_BlockID; \ - } \ - \ - template <> \ - size_t Variable::AddOperation(const Operator op, \ - const Params ¶meters) \ - { \ - helper::CheckForNullptr(m_Variable, \ - "in call to Variable::AddOperation"); \ - if (!op) \ - { \ - throw std::invalid_argument("ERROR: invalid operator, in call to " \ - "Variable::AddOperation"); \ - } \ - auto params = op.Parameters(); \ - for (const auto &p : parameters) \ - { \ - params[p.first] = p.second; \ - } \ - return m_Variable->AddOperation(op.m_Type, params); \ - } \ - \ - template <> \ - size_t Variable::AddOperation(const std::string &type, \ - const Params ¶meters) \ - { \ - helper::CheckForNullptr(m_Variable, \ - "in call to Variable::AddOperation"); \ - return m_Variable->AddOperation(type, parameters); \ - } \ - \ - template <> \ - std::vector Variable::Operations() const \ - { \ - helper::CheckForNullptr(m_Variable, \ - "in call to Variable::Operations"); \ - std::vector operations; \ - operations.reserve(m_Variable->m_Operations.size()); \ - for (const auto &op : m_Variable->m_Operations) \ - { \ - operations.push_back( \ - Operator(op->m_TypeString, &op->GetParameters())); \ - } \ - return operations; \ - } \ - \ - template <> \ - void Variable::RemoveOperations() \ - { \ - helper::CheckForNullptr(m_Variable, \ - "in call to Variable::RemoveOperations"); \ - m_Variable->RemoveOperations(); \ - } \ - \ - template <> \ - std::pair Variable::MinMax(const size_t step) const \ - { \ - helper::CheckForNullptr(m_Variable, "in call to Variable::MinMax"); \ - return m_Variable->MinMax(step); \ - } \ - \ - template <> \ - T Variable::Min(const size_t step) const \ - { \ - helper::CheckForNullptr(m_Variable, "in call to Variable::Min"); \ - return m_Variable->Min(step); \ - } \ - \ - template <> \ - T Variable::Max(const size_t step) const \ - { \ - helper::CheckForNullptr(m_Variable, "in call to Variable::Max"); \ - return m_Variable->Max(step); \ - } \ - \ - template <> \ - std::vector::Info>> \ - Variable::AllStepsBlocksInfo() \ - { \ - return DoAllStepsBlocksInfo(); \ - } \ - \ - template <> \ - std::map::Info>> \ - Variable::AllStepsBlocksInfoMap() const \ - { \ - return DoAllStepsBlocksInfoMap(); \ - } \ - \ - template <> \ - const T *Variable::Info::Data() const \ - { \ - const core::Variable::BPInfo *coreInfo = \ - reinterpret_cast::BPInfo *>(m_Info); \ - \ - return m_Info ? (coreInfo->BufferP ? coreInfo->BufferP \ - : coreInfo->BufferV.data()) \ - : nullptr; \ +#define declare_type(T) \ + \ + template <> \ + Variable::Variable(core::Variable *variable) : m_Variable(variable) \ + { \ + } \ + \ + template <> \ + Variable::operator bool() const noexcept \ + { \ + return (m_Variable == nullptr) ? false : true; \ + } \ + \ + template <> \ + void Variable::SetMemorySpace(const MemorySpace mem) \ + { \ + m_Variable->SetMemorySpace(mem); \ + } \ + \ + template <> \ + MemorySpace Variable::GetMemorySpace() \ + { \ + return m_Variable->m_MemSpace; \ + } \ + \ + template <> \ + void Variable::SetShape(const Dims &shape) \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::SetShape"); \ + m_Variable->SetShape(shape); \ + } \ + \ + template <> \ + void Variable::SetBlockSelection(const size_t blockID) \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::SetBlockSelection"); \ + m_Variable->SetBlockSelection(blockID); \ + } \ + \ + template <> \ + void Variable::SetSelection(const Box &selection) \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::SetSelection"); \ + m_Variable->SetSelection(selection); \ + } \ + \ + template <> \ + void Variable::SetMemorySelection(const Box &memorySelection) \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::SetMemorySelection"); \ + m_Variable->SetMemorySelection(memorySelection); \ + } \ + \ + template <> \ + void Variable::SetStepSelection(const Box &stepSelection) \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::SetStepSelection"); \ + m_Variable->SetStepSelection(stepSelection); \ + } \ + \ + template <> \ + size_t Variable::SelectionSize() const \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::SelectionSize"); \ + return m_Variable->SelectionSize(); \ + } \ + \ + template <> \ + std::string Variable::Name() const \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::Name"); \ + return m_Variable->m_Name; \ + } \ + \ + template <> \ + std::string Variable::Type() const \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::Type"); \ + return ToString(m_Variable->m_Type); \ + } \ + template <> \ + size_t Variable::Sizeof() const \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::Sizeof"); \ + return m_Variable->m_ElementSize; \ + } \ + \ + template <> \ + adios2::ShapeID Variable::ShapeID() const \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::ShapeID"); \ + return m_Variable->m_ShapeID; \ + } \ + \ + template <> \ + Dims Variable::Shape(const size_t step) const \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::Shape"); \ + return m_Variable->Shape(step); \ + } \ + \ + template <> \ + Dims Variable::Start() const \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::Start"); \ + return m_Variable->m_Start; \ + } \ + \ + template <> \ + Dims Variable::Count() const \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::Count"); \ + return m_Variable->Count(); \ + } \ + \ + template <> \ + size_t Variable::Steps() const \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::Steps"); \ + return m_Variable->m_AvailableStepsCount; \ + } \ + \ + template <> \ + size_t Variable::StepsStart() const \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::StepsStart"); \ + return m_Variable->m_AvailableStepsStart; \ + } \ + \ + template <> \ + size_t Variable::BlockID() const \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::BlockID"); \ + return m_Variable->m_BlockID; \ + } \ + \ + template <> \ + size_t Variable::AddOperation(const Operator op, const Params ¶meters) \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::AddOperation"); \ + if (!op) \ + { \ + throw std::invalid_argument("ERROR: invalid operator, in call to " \ + "Variable::AddOperation"); \ + } \ + auto params = op.Parameters(); \ + for (const auto &p : parameters) \ + { \ + params[p.first] = p.second; \ + } \ + return m_Variable->AddOperation(op.m_Type, params); \ + } \ + \ + template <> \ + size_t Variable::AddOperation(const std::string &type, const Params ¶meters) \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::AddOperation"); \ + return m_Variable->AddOperation(type, parameters); \ + } \ + \ + template <> \ + std::vector Variable::Operations() const \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::Operations"); \ + std::vector operations; \ + operations.reserve(m_Variable->m_Operations.size()); \ + for (const auto &op : m_Variable->m_Operations) \ + { \ + operations.push_back(Operator(op->m_TypeString, &op->GetParameters())); \ + } \ + return operations; \ + } \ + \ + template <> \ + void Variable::RemoveOperations() \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::RemoveOperations"); \ + m_Variable->RemoveOperations(); \ + } \ + \ + template <> \ + std::pair Variable::MinMax(const size_t step) const \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::MinMax"); \ + return m_Variable->MinMax(step); \ + } \ + \ + template <> \ + T Variable::Min(const size_t step) const \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::Min"); \ + return m_Variable->Min(step); \ + } \ + \ + template <> \ + T Variable::Max(const size_t step) const \ + { \ + helper::CheckForNullptr(m_Variable, "in call to Variable::Max"); \ + return m_Variable->Max(step); \ + } \ + \ + template <> \ + std::vector::Info>> Variable::AllStepsBlocksInfo() \ + { \ + return DoAllStepsBlocksInfo(); \ + } \ + \ + template <> \ + std::map::Info>> Variable::AllStepsBlocksInfoMap() \ + const \ + { \ + return DoAllStepsBlocksInfoMap(); \ + } \ + \ + template <> \ + const T *Variable::Info::Data() const \ + { \ + const core::Variable::BPInfo *coreInfo = \ + reinterpret_cast::BPInfo *>(m_Info); \ + \ + return m_Info ? (coreInfo->BufferP ? coreInfo->BufferP : coreInfo->BufferV.data()) \ + : nullptr; \ } ADIOS2_FOREACH_TYPE_1ARG(declare_type) #undef declare_type -#define declare_template_instantiation(T) \ - template std::string ToString(const Variable &var); +#define declare_template_instantiation(T) template std::string ToString(const Variable &var); ADIOS2_FOREACH_TYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -272,9 +252,9 @@ ADIOS2_FOREACH_TYPE_1ARG(declare_template_instantiation) ADIOS2_FOREACH_PRIMITIVE_TYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation -#define declare_template_instantiation(T) \ - template std::vector::Info> \ - Variable::ToBlocksInfoMin(const MinVarInfo *coreVarInfo) const; +#define declare_template_instantiation(T) \ + template std::vector::Info> Variable::ToBlocksInfoMin( \ + const MinVarInfo *coreVarInfo) const; ADIOS2_FOREACH_TYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation diff --git a/bindings/CXX11/adios2/cxx11/Variable.h b/bindings/CXX11/adios2/cxx11/Variable.h index 5cf2fb0d9e..398d001667 100644 --- a/bindings/CXX11/adios2/cxx11/Variable.h +++ b/bindings/CXX11/adios2/cxx11/Variable.h @@ -288,8 +288,7 @@ class Variable * be confused by op own parameters * @return operation index handler in Operations() */ - size_t AddOperation(const Operator op, - const adios2::Params ¶meters = adios2::Params()); + size_t AddOperation(const Operator op, const adios2::Params ¶meters = adios2::Params()); size_t AddOperation(const std::string &type, const adios2::Params ¶meters = adios2::Params()); @@ -384,22 +383,19 @@ class Variable /** */ - std::map::Info>> - AllStepsBlocksInfoMap() const; + std::map::Info>> AllStepsBlocksInfoMap() const; using Span = adios2::detail::Span; private: core::Variable *m_Variable = nullptr; - std::vector::Info> - ToBlocksInfoMin(const MinVarInfo *coreVarInfo) const; + std::vector::Info> ToBlocksInfoMin(const MinVarInfo *coreVarInfo) const; Variable(core::Variable *variable); std::vector::Info>> DoAllStepsBlocksInfo(); - std::map::Info>> - DoAllStepsBlocksInfoMap() const; + std::map::Info>> DoAllStepsBlocksInfoMap() const; }; template diff --git a/bindings/CXX11/adios2/cxx11/Variable.tcc b/bindings/CXX11/adios2/cxx11/Variable.tcc index a776cde227..cb212e3a61 100644 --- a/bindings/CXX11/adios2/cxx11/Variable.tcc +++ b/bindings/CXX11/adios2/cxx11/Variable.tcc @@ -24,16 +24,15 @@ namespace template std::vector::Info> -ToBlocksInfo(const std::vector::IOType>::BPInfo> &coreBlocksInfo) +ToBlocksInfo(const std::vector::IOType>::BPInfo> + &coreBlocksInfo) { using IOType = typename TypeInfo::IOType; std::vector::Info> blocksInfo; blocksInfo.reserve(coreBlocksInfo.size()); - for (const typename core::Variable::BPInfo &coreBlockInfo : - coreBlocksInfo) + for (const typename core::Variable::BPInfo &coreBlockInfo : coreBlocksInfo) { typename Variable::Info blockInfo; blockInfo.Start = coreBlockInfo.Start; @@ -70,8 +69,7 @@ Variable::DoAllStepsBlocksInfoMap() const minBlocksInfo = m_Variable->m_Engine->MinBlocksInfo(*m_Variable, 0); if (!minBlocksInfo) throw std::logic_error("not implemented"); - std::map::Info>> - allStepsBlocksInfo; + std::map::Info>> allStepsBlocksInfo; size_t gotCount = 1; size_t curStep = 1; @@ -79,12 +77,10 @@ Variable::DoAllStepsBlocksInfoMap() const delete (minBlocksInfo); while (gotCount < m_Variable->m_AvailableStepsCount) { - minBlocksInfo = - m_Variable->m_Engine->MinBlocksInfo(*m_Variable, curStep); + minBlocksInfo = m_Variable->m_Engine->MinBlocksInfo(*m_Variable, curStep); if (minBlocksInfo) { - allStepsBlocksInfo.insert( - {curStep, ToBlocksInfoMin(minBlocksInfo)}); + allStepsBlocksInfo.insert({curStep, ToBlocksInfoMin(minBlocksInfo)}); delete (minBlocksInfo); gotCount++; } @@ -94,21 +90,18 @@ Variable::DoAllStepsBlocksInfoMap() const } template -std::vector::Info>> -Variable::DoAllStepsBlocksInfo() +std::vector::Info>> Variable::DoAllStepsBlocksInfo() { - helper::CheckForNullptr(m_Variable, - "in call to Variable::AllStepsBlocksInfo"); + helper::CheckForNullptr(m_Variable, "in call to Variable::AllStepsBlocksInfo"); MinVarInfo *minBlocksInfo = nullptr; if (m_Variable->m_Engine) { - minBlocksInfo = m_Variable->m_Engine->MinBlocksInfo( - *m_Variable, m_Variable->m_AvailableStepsStart); + minBlocksInfo = + m_Variable->m_Engine->MinBlocksInfo(*m_Variable, m_Variable->m_AvailableStepsStart); if (minBlocksInfo) { - std::vector::Info>> - allStepsBlocksInfo; + std::vector::Info>> allStepsBlocksInfo; // PUBLIC OUTPUT size_t gotCount = 1; size_t curStep = m_Variable->m_AvailableStepsStart + 1; @@ -116,12 +109,10 @@ Variable::DoAllStepsBlocksInfo() delete (minBlocksInfo); while (gotCount < m_Variable->m_AvailableStepsCount) { - minBlocksInfo = - m_Variable->m_Engine->MinBlocksInfo(*m_Variable, curStep); + minBlocksInfo = m_Variable->m_Engine->MinBlocksInfo(*m_Variable, curStep); if (minBlocksInfo) { - allStepsBlocksInfo.push_back( - ToBlocksInfoMin(minBlocksInfo)); + allStepsBlocksInfo.push_back(ToBlocksInfoMin(minBlocksInfo)); delete (minBlocksInfo); gotCount++; } @@ -132,8 +123,8 @@ Variable::DoAllStepsBlocksInfo() } // PRIVATE INPUT - const std::vector::BPInfo>> - coreAllStepsBlocksInfo = m_Variable->AllStepsBlocksInfo(); + const std::vector::BPInfo>> coreAllStepsBlocksInfo = + m_Variable->AllStepsBlocksInfo(); // PUBLIC OUTPUT std::vector::Info>> allStepsBlocksInfo( @@ -221,8 +212,7 @@ Variable::ToBlocksInfoMin(const MinVarInfo *coreVarInfo) const template std::string ToString(const Variable &variable) { - return std::string("Variable<") + variable.Type() + ">(Name: \"" + - variable.Name() + "\")"; + return std::string("Variable<") + variable.Type() + ">(Name: \"" + variable.Name() + "\")"; } namespace detail diff --git a/bindings/CXX11/adios2/cxx11/VariableNT.cpp b/bindings/CXX11/adios2/cxx11/VariableNT.cpp index 066da5c9f2..a69ece133f 100644 --- a/bindings/CXX11/adios2/cxx11/VariableNT.cpp +++ b/bindings/CXX11/adios2/cxx11/VariableNT.cpp @@ -16,68 +16,56 @@ namespace adios2 { -StructDefinition::StructDefinition(core::StructDefinition *ptr) -: m_StructDefinition(ptr) -{ -} +StructDefinition::StructDefinition(core::StructDefinition *ptr) : m_StructDefinition(ptr) {} -void StructDefinition::AddField(const std::string &name, const size_t offset, - const DataType type, const size_t size) +void StructDefinition::AddField(const std::string &name, const size_t offset, const DataType type, + const size_t size) { - helper::CheckForNullptr(m_StructDefinition, - "in call to StructDefinition::AddField"); + helper::CheckForNullptr(m_StructDefinition, "in call to StructDefinition::AddField"); m_StructDefinition->AddField(name, offset, type, size); } void StructDefinition::Freeze() noexcept { - helper::CheckForNullptr(m_StructDefinition, - "in call to StructDefinition::Freeze"); + helper::CheckForNullptr(m_StructDefinition, "in call to StructDefinition::Freeze"); m_StructDefinition->Freeze(); } size_t StructDefinition::StructSize() const noexcept { - helper::CheckForNullptr(m_StructDefinition, - "in call to StructDefinition::StructSize"); + helper::CheckForNullptr(m_StructDefinition, "in call to StructDefinition::StructSize"); return m_StructDefinition->StructSize(); } std::string StructDefinition::StructName() const noexcept { - helper::CheckForNullptr(m_StructDefinition, - "in call to StructDefinition::StructName"); + helper::CheckForNullptr(m_StructDefinition, "in call to StructDefinition::StructName"); return m_StructDefinition->StructName(); } size_t StructDefinition::Fields() const noexcept { - helper::CheckForNullptr(m_StructDefinition, - "in call to StructDefinition::Fields"); + helper::CheckForNullptr(m_StructDefinition, "in call to StructDefinition::Fields"); return m_StructDefinition->Fields(); } std::string StructDefinition::Name(const size_t index) const { - helper::CheckForNullptr(m_StructDefinition, - "in call to StructDefinition::Name"); + helper::CheckForNullptr(m_StructDefinition, "in call to StructDefinition::Name"); return m_StructDefinition->Name(index); } size_t StructDefinition::Offset(const size_t index) const { - helper::CheckForNullptr(m_StructDefinition, - "in call to StructDefinition::Offset"); + helper::CheckForNullptr(m_StructDefinition, "in call to StructDefinition::Offset"); return m_StructDefinition->Offset(index); } DataType StructDefinition::Type(const size_t index) const { - helper::CheckForNullptr(m_StructDefinition, - "in call to StructDefinition::Type"); + helper::CheckForNullptr(m_StructDefinition, "in call to StructDefinition::Type"); return m_StructDefinition->Type(index); } size_t StructDefinition::ElementCount(const size_t index) const { - helper::CheckForNullptr(m_StructDefinition, - "in call to StructDefinition::ElementCount"); + helper::CheckForNullptr(m_StructDefinition, "in call to StructDefinition::ElementCount"); return m_StructDefinition->ElementCount(index); } @@ -87,8 +75,7 @@ VariableNT::operator bool() const noexcept { return m_Variable != nullptr; } void VariableNT::SetMemorySpace(const MemorySpace mem) { - helper::CheckForNullptr(m_Variable, - "in call to VariableNT::SetMemorySpace"); + helper::CheckForNullptr(m_Variable, "in call to VariableNT::SetMemorySpace"); m_Variable->SetMemorySpace(mem); } @@ -100,8 +87,7 @@ void VariableNT::SetShape(const Dims &shape) void VariableNT::SetBlockSelection(const size_t blockID) { - helper::CheckForNullptr(m_Variable, - "in call to VariableNT::SetBlockSelection"); + helper::CheckForNullptr(m_Variable, "in call to VariableNT::SetBlockSelection"); m_Variable->SetBlockSelection(blockID); } @@ -113,15 +99,13 @@ void VariableNT::SetSelection(const Box &selection) void VariableNT::SetMemorySelection(const Box &memorySelection) { - helper::CheckForNullptr(m_Variable, - "in call to VariableNT::SetMemorySelection"); + helper::CheckForNullptr(m_Variable, "in call to VariableNT::SetMemorySelection"); m_Variable->SetMemorySelection(memorySelection); } void VariableNT::SetStepSelection(const Box &stepSelection) { - helper::CheckForNullptr(m_Variable, - "in call to VariableNT::SetStepSelection"); + helper::CheckForNullptr(m_Variable, "in call to VariableNT::SetStepSelection"); m_Variable->SetStepSelection(stepSelection); } @@ -129,16 +113,14 @@ size_t VariableNT::SelectionSize() const { helper::CheckForNullptr(m_Variable, "in call to VariableNT::SelectionSize"); auto type = ToString(m_Variable->m_Type); -#define declare_type(T) \ - if (type == GetType()) \ - { \ - return reinterpret_cast *>(m_Variable) \ - ->SelectionSize(); \ +#define declare_type(T) \ + if (type == GetType()) \ + { \ + return reinterpret_cast *>(m_Variable)->SelectionSize(); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type - helper::Throw("bindings::CXX11", "VariableNT", - "SelectionSize", + helper::Throw("bindings::CXX11", "VariableNT", "SelectionSize", "invalid data type " + type); return 0; } @@ -183,10 +165,10 @@ Dims VariableNT::Count() const { helper::CheckForNullptr(m_Variable, "in call to VariableNT::Count"); auto type = m_Variable->m_Type; -#define declare_type(T) \ - if (type == helper::GetDataType()) \ - { \ - return reinterpret_cast *>(m_Variable)->Count(); \ +#define declare_type(T) \ + if (type == helper::GetDataType()) \ + { \ + return reinterpret_cast *>(m_Variable)->Count(); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -222,8 +204,7 @@ size_t VariableNT::AddOperation(const Operator op, const Params ¶meters) helper::CheckForNullptr(m_Variable, "in call to VariableNT::AddOperation"); if (!op) { - helper::Throw("bindings::CXX11", "VariableNT", - "AddOperation", + helper::Throw("bindings::CXX11", "VariableNT", "AddOperation", "invalid operation"); } auto params = op.Parameters(); @@ -234,8 +215,7 @@ size_t VariableNT::AddOperation(const Operator op, const Params ¶meters) return m_Variable->AddOperation(op.m_Type, params); } -size_t VariableNT::AddOperation(const std::string &type, - const Params ¶meters) +size_t VariableNT::AddOperation(const std::string &type, const Params ¶meters) { helper::CheckForNullptr(m_Variable, "in call to VariableNT::AddOperation"); return m_Variable->AddOperation(type, parameters); @@ -255,8 +235,7 @@ std::vector VariableNT::Operations() const void VariableNT::RemoveOperations() { - helper::CheckForNullptr(m_Variable, - "in call to VariableNT::RemoveOperations"); + helper::CheckForNullptr(m_Variable, "in call to VariableNT::RemoveOperations"); m_Variable->RemoveOperations(); } @@ -265,13 +244,11 @@ size_t VariableNT::StructFields() const helper::CheckForNullptr(m_Variable, "in call to VariableNT::StructFields"); if (m_Variable->m_Type != DataType::Struct) { - helper::Throw( - "bindings::CXX11", "VariableNT", "StructFields", - "invalid data type " + ToString(m_Variable->m_Type) + - ", only Struct type supports this API"); + helper::Throw("bindings::CXX11", "VariableNT", "StructFields", + "invalid data type " + ToString(m_Variable->m_Type) + + ", only Struct type supports this API"); } - if (reinterpret_cast(m_Variable) - ->m_ReadStructDefinition) + if (reinterpret_cast(m_Variable)->m_ReadStructDefinition) return reinterpret_cast(m_Variable) ->m_ReadStructDefinition->Fields(); else @@ -280,17 +257,14 @@ size_t VariableNT::StructFields() const } std::string VariableNT::StructFieldName(const size_t index) const { - helper::CheckForNullptr(m_Variable, - "in call to VariableNT::StructFieldName"); + helper::CheckForNullptr(m_Variable, "in call to VariableNT::StructFieldName"); if (m_Variable->m_Type != DataType::Struct) { - helper::Throw( - "bindings::CXX11", "VariableNT", "StructFieldName", - "invalid data type " + ToString(m_Variable->m_Type) + - ", only Struct type supports this API"); + helper::Throw("bindings::CXX11", "VariableNT", "StructFieldName", + "invalid data type " + ToString(m_Variable->m_Type) + + ", only Struct type supports this API"); } - if (reinterpret_cast(m_Variable) - ->m_ReadStructDefinition) + if (reinterpret_cast(m_Variable)->m_ReadStructDefinition) return reinterpret_cast(m_Variable) ->m_ReadStructDefinition->Name(index); else @@ -299,17 +273,14 @@ std::string VariableNT::StructFieldName(const size_t index) const } size_t VariableNT::StructFieldOffset(const size_t index) const { - helper::CheckForNullptr(m_Variable, - "in call to VariableNT::StructFieldOffset"); + helper::CheckForNullptr(m_Variable, "in call to VariableNT::StructFieldOffset"); if (m_Variable->m_Type != DataType::Struct) { - helper::Throw( - "bindings::CXX11", "VariableNT", "StructFieldOffset", - "invalid data type " + ToString(m_Variable->m_Type) + - ", only Struct type supports this API"); + helper::Throw("bindings::CXX11", "VariableNT", "StructFieldOffset", + "invalid data type " + ToString(m_Variable->m_Type) + + ", only Struct type supports this API"); } - if (reinterpret_cast(m_Variable) - ->m_ReadStructDefinition) + if (reinterpret_cast(m_Variable)->m_ReadStructDefinition) return reinterpret_cast(m_Variable) ->m_ReadStructDefinition->Offset(index); else @@ -318,17 +289,14 @@ size_t VariableNT::StructFieldOffset(const size_t index) const } DataType VariableNT::StructFieldType(const size_t index) const { - helper::CheckForNullptr(m_Variable, - "in call to VariableNT::StructFieldType"); + helper::CheckForNullptr(m_Variable, "in call to VariableNT::StructFieldType"); if (m_Variable->m_Type != DataType::Struct) { - helper::Throw( - "bindings::CXX11", "VariableNT", "StructFieldType", - "invalid data type " + ToString(m_Variable->m_Type) + - ", only Struct type supports this API"); + helper::Throw("bindings::CXX11", "VariableNT", "StructFieldType", + "invalid data type " + ToString(m_Variable->m_Type) + + ", only Struct type supports this API"); } - if (reinterpret_cast(m_Variable) - ->m_ReadStructDefinition) + if (reinterpret_cast(m_Variable)->m_ReadStructDefinition) return reinterpret_cast(m_Variable) ->m_ReadStructDefinition->Type(index); else @@ -337,17 +305,15 @@ DataType VariableNT::StructFieldType(const size_t index) const } size_t VariableNT::StructFieldElementCount(const size_t index) const { - helper::CheckForNullptr(m_Variable, - "in call to VariableNT::StructFieldElementCount"); + helper::CheckForNullptr(m_Variable, "in call to VariableNT::StructFieldElementCount"); if (m_Variable->m_Type != DataType::Struct) { - helper::Throw( - "bindings::CXX11", "VariableNT", "StructFieldElementCount", - "invalid data type " + ToString(m_Variable->m_Type) + - ", only Struct type supports this API"); + helper::Throw("bindings::CXX11", "VariableNT", + "StructFieldElementCount", + "invalid data type " + ToString(m_Variable->m_Type) + + ", only Struct type supports this API"); } - if (reinterpret_cast(m_Variable) - ->m_ReadStructDefinition) + if (reinterpret_cast(m_Variable)->m_ReadStructDefinition) return reinterpret_cast(m_Variable) ->m_ReadStructDefinition->ElementCount(index); else @@ -355,8 +321,7 @@ size_t VariableNT::StructFieldElementCount(const size_t index) const ->m_WriteStructDefinition->ElementCount(index); } -std::pair -VariableNT::MinMax(const size_t step) const +std::pair VariableNT::MinMax(const size_t step) const { helper::CheckForNullptr(m_Variable, "in call to VariableNT::MinMax"); return {Min(step), Max(step)}; @@ -368,77 +333,66 @@ VariableNT::T VariableNT::Min(const size_t step) const if (m_Variable->m_Type == DataType::Int8) { VariableNT::T ret = {0}; - ret.Int8 = - reinterpret_cast *>(m_Variable)->Min(step); + ret.Int8 = reinterpret_cast *>(m_Variable)->Min(step); return ret; } else if (m_Variable->m_Type == DataType::UInt8) { VariableNT::T ret = {0}; - ret.UInt8 = - reinterpret_cast *>(m_Variable)->Min(step); + ret.UInt8 = reinterpret_cast *>(m_Variable)->Min(step); return ret; } else if (m_Variable->m_Type == DataType::Int16) { VariableNT::T ret = {0}; - ret.Int16 = - reinterpret_cast *>(m_Variable)->Min(step); + ret.Int16 = reinterpret_cast *>(m_Variable)->Min(step); return ret; } else if (m_Variable->m_Type == DataType::UInt16) { VariableNT::T ret = {0}; - ret.UInt16 = - reinterpret_cast *>(m_Variable)->Min(step); + ret.UInt16 = reinterpret_cast *>(m_Variable)->Min(step); return ret; } else if (m_Variable->m_Type == DataType::Int32) { VariableNT::T ret = {0}; - ret.Int32 = - reinterpret_cast *>(m_Variable)->Min(step); + ret.Int32 = reinterpret_cast *>(m_Variable)->Min(step); return ret; } else if (m_Variable->m_Type == DataType::UInt32) { VariableNT::T ret = {0}; - ret.UInt32 = - reinterpret_cast *>(m_Variable)->Min(step); + ret.UInt32 = reinterpret_cast *>(m_Variable)->Min(step); return ret; } else if (m_Variable->m_Type == DataType::Int64) { VariableNT::T ret = {0}; - ret.Int64 = - reinterpret_cast *>(m_Variable)->Min(step); + ret.Int64 = reinterpret_cast *>(m_Variable)->Min(step); return ret; } else if (m_Variable->m_Type == DataType::UInt64) { VariableNT::T ret = {0}; - ret.UInt64 = - reinterpret_cast *>(m_Variable)->Min(step); + ret.UInt64 = reinterpret_cast *>(m_Variable)->Min(step); return ret; } else if (m_Variable->m_Type == DataType::Float) { VariableNT::T ret = {0}; - ret.Float = - reinterpret_cast *>(m_Variable)->Min(step); + ret.Float = reinterpret_cast *>(m_Variable)->Min(step); return ret; } else if (m_Variable->m_Type == DataType::Double) { VariableNT::T ret = {0}; - ret.Double = - reinterpret_cast *>(m_Variable)->Min(step); + ret.Double = reinterpret_cast *>(m_Variable)->Min(step); return ret; } - helper::Throw( - "bindings::CXX11", "VariableNT", "Min", - "invalid data type " + ToString(m_Variable->m_Type) + - ", only basic numeric types support this API"); + helper::Throw("bindings::CXX11", "VariableNT", "Min", + "invalid data type " + ToString(m_Variable->m_Type) + + ", only basic numeric types support this API"); return {0}; } @@ -448,77 +402,66 @@ VariableNT::T VariableNT::Max(const size_t step) const if (m_Variable->m_Type == DataType::Int8) { VariableNT::T ret = {0}; - ret.Int8 = - reinterpret_cast *>(m_Variable)->Max(step); + ret.Int8 = reinterpret_cast *>(m_Variable)->Max(step); return ret; } else if (m_Variable->m_Type == DataType::UInt8) { VariableNT::T ret = {0}; - ret.UInt8 = - reinterpret_cast *>(m_Variable)->Max(step); + ret.UInt8 = reinterpret_cast *>(m_Variable)->Max(step); return ret; } else if (m_Variable->m_Type == DataType::Int16) { VariableNT::T ret = {0}; - ret.Int16 = - reinterpret_cast *>(m_Variable)->Max(step); + ret.Int16 = reinterpret_cast *>(m_Variable)->Max(step); return ret; } else if (m_Variable->m_Type == DataType::UInt16) { VariableNT::T ret = {0}; - ret.UInt16 = - reinterpret_cast *>(m_Variable)->Max(step); + ret.UInt16 = reinterpret_cast *>(m_Variable)->Max(step); return ret; } else if (m_Variable->m_Type == DataType::Int32) { VariableNT::T ret = {0}; - ret.Int32 = - reinterpret_cast *>(m_Variable)->Max(step); + ret.Int32 = reinterpret_cast *>(m_Variable)->Max(step); return ret; } else if (m_Variable->m_Type == DataType::UInt32) { VariableNT::T ret = {0}; - ret.UInt32 = - reinterpret_cast *>(m_Variable)->Max(step); + ret.UInt32 = reinterpret_cast *>(m_Variable)->Max(step); return ret; } else if (m_Variable->m_Type == DataType::Int64) { VariableNT::T ret = {0}; - ret.Int64 = - reinterpret_cast *>(m_Variable)->Max(step); + ret.Int64 = reinterpret_cast *>(m_Variable)->Max(step); return ret; } else if (m_Variable->m_Type == DataType::UInt64) { VariableNT::T ret = {0}; - ret.UInt64 = - reinterpret_cast *>(m_Variable)->Max(step); + ret.UInt64 = reinterpret_cast *>(m_Variable)->Max(step); return ret; } else if (m_Variable->m_Type == DataType::Float) { VariableNT::T ret = {0}; - ret.Float = - reinterpret_cast *>(m_Variable)->Max(step); + ret.Float = reinterpret_cast *>(m_Variable)->Max(step); return ret; } else if (m_Variable->m_Type == DataType::Double) { VariableNT::T ret = {0}; - ret.Double = - reinterpret_cast *>(m_Variable)->Max(step); + ret.Double = reinterpret_cast *>(m_Variable)->Max(step); return ret; } - helper::Throw( - "bindings::CXX11", "VariableNT", "Max", - "invalid data type " + ToString(m_Variable->m_Type) + - ", only basic numeric types support this API"); + helper::Throw("bindings::CXX11", "VariableNT", "Max", + "invalid data type " + ToString(m_Variable->m_Type) + + ", only basic numeric types support this API"); return {0}; } @@ -543,8 +486,7 @@ double VariableNT::MinDouble(const size_t step) const else if (m_Variable->m_Type == DataType::UInt16) { return static_cast( - reinterpret_cast *>(m_Variable) - ->Min(step)); + reinterpret_cast *>(m_Variable)->Min(step)); } else if (m_Variable->m_Type == DataType::Int32) { @@ -554,8 +496,7 @@ double VariableNT::MinDouble(const size_t step) const else if (m_Variable->m_Type == DataType::UInt32) { return static_cast( - reinterpret_cast *>(m_Variable) - ->Min(step)); + reinterpret_cast *>(m_Variable)->Min(step)); } else if (m_Variable->m_Type == DataType::Int64) { @@ -565,8 +506,7 @@ double VariableNT::MinDouble(const size_t step) const else if (m_Variable->m_Type == DataType::UInt64) { return static_cast( - reinterpret_cast *>(m_Variable) - ->Min(step)); + reinterpret_cast *>(m_Variable)->Min(step)); } else if (m_Variable->m_Type == DataType::Float) { @@ -578,10 +518,9 @@ double VariableNT::MinDouble(const size_t step) const return static_cast( reinterpret_cast *>(m_Variable)->Min(step)); } - helper::Throw( - "bindings::CXX11", "VariableNT", "MinDouble", - "invalid data type " + ToString(m_Variable->m_Type) + - ", only basic numeric types support this API"); + helper::Throw("bindings::CXX11", "VariableNT", "MinDouble", + "invalid data type " + ToString(m_Variable->m_Type) + + ", only basic numeric types support this API"); return 0; } @@ -606,8 +545,7 @@ double VariableNT::MaxDouble(const size_t step) const else if (m_Variable->m_Type == DataType::UInt16) { return static_cast( - reinterpret_cast *>(m_Variable) - ->Max(step)); + reinterpret_cast *>(m_Variable)->Max(step)); } else if (m_Variable->m_Type == DataType::Int32) { @@ -617,8 +555,7 @@ double VariableNT::MaxDouble(const size_t step) const else if (m_Variable->m_Type == DataType::UInt32) { return static_cast( - reinterpret_cast *>(m_Variable) - ->Max(step)); + reinterpret_cast *>(m_Variable)->Max(step)); } else if (m_Variable->m_Type == DataType::Int64) { @@ -628,8 +565,7 @@ double VariableNT::MaxDouble(const size_t step) const else if (m_Variable->m_Type == DataType::UInt64) { return static_cast( - reinterpret_cast *>(m_Variable) - ->Max(step)); + reinterpret_cast *>(m_Variable)->Max(step)); } else if (m_Variable->m_Type == DataType::Float) { @@ -641,10 +577,9 @@ double VariableNT::MaxDouble(const size_t step) const return static_cast( reinterpret_cast *>(m_Variable)->Max(step)); } - helper::Throw( - "bindings::CXX11", "VariableNT", "MaxDouble", - "invalid data type " + ToString(m_Variable->m_Type) + - ", only basic numeric types support this API"); + helper::Throw("bindings::CXX11", "VariableNT", "MaxDouble", + "invalid data type " + ToString(m_Variable->m_Type) + + ", only basic numeric types support this API"); return 0; } @@ -656,50 +591,44 @@ std::pair VariableNT::MinMaxDouble(const size_t step) const StructDefinition VariableNT::GetWriteStructDef() noexcept { - helper::CheckForNullptr(m_Variable, - "in call to VariableNT::StructFieldElementCount"); + helper::CheckForNullptr(m_Variable, "in call to VariableNT::StructFieldElementCount"); if (m_Variable->m_Type != DataType::Struct) { - helper::Throw( - "bindings::CXX11", "VariableNT", "StructFieldElementCount", - "invalid data type " + ToString(m_Variable->m_Type) + - ", only Struct type supports this API"); + helper::Throw("bindings::CXX11", "VariableNT", + "StructFieldElementCount", + "invalid data type " + ToString(m_Variable->m_Type) + + ", only Struct type supports this API"); } core::StructDefinition *CoreSD = - reinterpret_cast(m_Variable) - ->GetWriteStructDef(); + reinterpret_cast(m_Variable)->GetWriteStructDef(); return StructDefinition(CoreSD); } StructDefinition VariableNT::GetReadStructDef() noexcept { - helper::CheckForNullptr(m_Variable, - "in call to VariableNT::StructFieldElementCount"); + helper::CheckForNullptr(m_Variable, "in call to VariableNT::StructFieldElementCount"); if (m_Variable->m_Type != DataType::Struct) { - helper::Throw( - "bindings::CXX11", "VariableNT", "StructFieldElementCount", - "invalid data type " + ToString(m_Variable->m_Type) + - ", only Struct type supports this API"); + helper::Throw("bindings::CXX11", "VariableNT", + "StructFieldElementCount", + "invalid data type " + ToString(m_Variable->m_Type) + + ", only Struct type supports this API"); } - auto CoreSD = reinterpret_cast(m_Variable) - ->GetReadStructDef(); + auto CoreSD = reinterpret_cast(m_Variable)->GetReadStructDef(); return StructDefinition(CoreSD); } void VariableNT::SetReadStructDef(const StructDefinition &def) { - helper::CheckForNullptr(m_Variable, - "in call to VariableNT::StructFieldElementCount"); + helper::CheckForNullptr(m_Variable, "in call to VariableNT::StructFieldElementCount"); if (m_Variable->m_Type != DataType::Struct) { - helper::Throw( - "bindings::CXX11", "VariableNT", "StructFieldElementCount", - "invalid data type " + ToString(m_Variable->m_Type) + - ", only Struct type supports this API"); + helper::Throw("bindings::CXX11", "VariableNT", + "StructFieldElementCount", + "invalid data type " + ToString(m_Variable->m_Type) + + ", only Struct type supports this API"); } - reinterpret_cast(m_Variable) - ->SetReadStructDef(def.m_StructDefinition); + reinterpret_cast(m_Variable)->SetReadStructDef(def.m_StructDefinition); } } // end namespace adios2 diff --git a/bindings/CXX11/adios2/cxx11/VariableNT.h b/bindings/CXX11/adios2/cxx11/VariableNT.h index b0f01de6d2..8589ac0e95 100644 --- a/bindings/CXX11/adios2/cxx11/VariableNT.h +++ b/bindings/CXX11/adios2/cxx11/VariableNT.h @@ -28,8 +28,8 @@ class StructDefinition { public: - void AddField(const std::string &name, const size_t offset, - const DataType type, const size_t size = 1); + void AddField(const std::string &name, const size_t offset, const DataType type, + const size_t size = 1); void Freeze() noexcept; size_t StructSize() const noexcept; std::string StructName() const noexcept; @@ -194,8 +194,7 @@ class VariableNT * be confused by op own parameters * @return operation index handler in Operations() */ - size_t AddOperation(const Operator op, - const adios2::Params ¶meters = adios2::Params()); + size_t AddOperation(const Operator op, const adios2::Params ¶meters = adios2::Params()); size_t AddOperation(const std::string &type, const adios2::Params ¶meters = adios2::Params()); @@ -251,8 +250,7 @@ class VariableNT double MinDouble(const size_t step = adios2::DefaultSizeT) const; double MaxDouble(const size_t step = adios2::DefaultSizeT) const; - std::pair - MinMaxDouble(const size_t step = adios2::DefaultSizeT) const; + std::pair MinMaxDouble(const size_t step = adios2::DefaultSizeT) const; StructDefinition GetWriteStructDef() noexcept; StructDefinition GetReadStructDef() noexcept; diff --git a/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstream.cpp b/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstream.cpp index effd096239..03b881e7fa 100644 --- a/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstream.cpp +++ b/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstream.cpp @@ -14,36 +14,29 @@ namespace adios2 { -fstream::fstream(const std::string &name, const openmode mode, - const std::string engineType) -: m_Stream( - std::make_shared(name, ToMode(mode), engineType, "C++")) +fstream::fstream(const std::string &name, const openmode mode, const std::string engineType) +: m_Stream(std::make_shared(name, ToMode(mode), engineType, "C++")) { } -fstream::fstream(const std::string &name, const openmode mode, - const std::string &configFile, +fstream::fstream(const std::string &name, const openmode mode, const std::string &configFile, const std::string ioInConfigFile) -: m_Stream(std::make_shared(name, ToMode(mode), configFile, - ioInConfigFile, "C++")) +: m_Stream(std::make_shared(name, ToMode(mode), configFile, ioInConfigFile, "C++")) { } -void fstream::open(const std::string &name, const openmode mode, - const std::string engineType) +void fstream::open(const std::string &name, const openmode mode, const std::string engineType) { CheckOpen(name); - m_Stream = - std::make_shared(name, ToMode(mode), engineType, "C++"); + m_Stream = std::make_shared(name, ToMode(mode), engineType, "C++"); } -void fstream::open(const std::string &name, const openmode mode, - const std::string configFile, +void fstream::open(const std::string &name, const openmode mode, const std::string configFile, const std::string ioInConfigFile) { CheckOpen(name); - m_Stream = std::make_shared(name, ToMode(mode), configFile, - ioInConfigFile, "C++"); + m_Stream = + std::make_shared(name, ToMode(mode), configFile, ioInConfigFile, "C++"); } fstream::operator bool() const noexcept @@ -64,8 +57,7 @@ void fstream::close() m_Stream.reset(); } -void fstream::set_parameter(const std::string key, - const std::string value) noexcept +void fstream::set_parameter(const std::string key, const std::string value) noexcept { m_Stream->m_IO->SetParameter(key, value); } @@ -81,10 +73,7 @@ bool getstep(adios2::fstream &stream, adios2::fstep &step) return step.m_Stream->GetStep(); } -size_t fstream::current_step() const noexcept -{ - return m_Stream->CurrentStep(); -} +size_t fstream::current_step() const noexcept { return m_Stream->CurrentStep(); } adios2::Mode fstream::ToMode(const openmode mode) const noexcept { @@ -119,63 +108,53 @@ void fstream::CheckOpen(const std::string &name) const } } -#define declare_template_instantiation(T) \ - template void fstream::write_attribute(const std::string &, const T &, \ - const std::string &, \ - const std::string, const bool); \ - \ - template void fstream::write_attribute( \ - const std::string &, const T *, const size_t, const std::string &, \ - const std::string, const bool); \ - \ - template std::vector fstream::read_attribute( \ - const std::string &, const std::string &, const std::string); +#define declare_template_instantiation(T) \ + template void fstream::write_attribute(const std::string &, const T &, const std::string &, \ + const std::string, const bool); \ + \ + template void fstream::write_attribute(const std::string &, const T *, const size_t, \ + const std::string &, const std::string, const bool); \ + \ + template std::vector fstream::read_attribute(const std::string &, const std::string &, \ + const std::string); ADIOS2_FOREACH_ATTRIBUTE_TYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation -#define declare_template_instantiation(T) \ - template void fstream::write(const std::string &, const T *, \ - const Dims &, const Dims &, const Dims &, \ - const bool); \ - \ - template void fstream::write(const std::string &, const T *, \ - const Dims &, const Dims &, const Dims &, \ - const vParams &, const bool); \ - \ - template void fstream::write(const std::string &, const T &, \ - const bool, const bool); \ - \ - template std::vector fstream::read(const std::string &, \ - const size_t); \ - \ - template std::vector fstream::read( \ - const std::string &, const size_t, const size_t, const size_t); \ - \ - template std::vector fstream::read( \ - const std::string &, const Dims &, const Dims &, const size_t); \ - \ - template std::vector fstream::read( \ - const std::string &, const Dims &, const Dims &, const size_t, \ - const size_t, const size_t); \ - \ - template void fstream::read(const std::string &, T *, const size_t); \ - \ - template void fstream::read(const std::string &, T *, const size_t, \ - const size_t, const size_t); \ - \ - template void fstream::read(const std::string &name, T &, \ - const size_t); \ - \ - template void fstream::read(const std::string &name, T &, const size_t, \ - const size_t); \ - \ - template void fstream::read(const std::string &, T *, const Dims &, \ - const Dims &, const size_t); \ - \ - template void fstream::read(const std::string &, T *, const Dims &, \ - const Dims &, const size_t, const size_t, \ - const size_t); +#define declare_template_instantiation(T) \ + template void fstream::write(const std::string &, const T *, const Dims &, const Dims &, \ + const Dims &, const bool); \ + \ + template void fstream::write(const std::string &, const T *, const Dims &, const Dims &, \ + const Dims &, const vParams &, const bool); \ + \ + template void fstream::write(const std::string &, const T &, const bool, const bool); \ + \ + template std::vector fstream::read(const std::string &, const size_t); \ + \ + template std::vector fstream::read(const std::string &, const size_t, const size_t, \ + const size_t); \ + \ + template std::vector fstream::read(const std::string &, const Dims &, const Dims &, \ + const size_t); \ + \ + template std::vector fstream::read(const std::string &, const Dims &, const Dims &, \ + const size_t, const size_t, const size_t); \ + \ + template void fstream::read(const std::string &, T *, const size_t); \ + \ + template void fstream::read(const std::string &, T *, const size_t, const size_t, \ + const size_t); \ + \ + template void fstream::read(const std::string &name, T &, const size_t); \ + \ + template void fstream::read(const std::string &name, T &, const size_t, const size_t); \ + \ + template void fstream::read(const std::string &, T *, const Dims &, const Dims &, \ + const size_t); \ + \ + template void fstream::read(const std::string &, T *, const Dims &, const Dims &, \ + const size_t, const size_t, const size_t); ADIOS2_FOREACH_TYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation diff --git a/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstream.h b/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstream.h index fdc05fc625..546bf54ccb 100644 --- a/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstream.h +++ b/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstream.h @@ -63,8 +63,8 @@ class fstream * @throws std::invalid_argument (user input error) or std::runtime_error * (system error) */ - fstream(const std::string &name, adios2::fstream::openmode mode, - MPI_Comm comm, const std::string engineType = "BPFile"); + fstream(const std::string &name, adios2::fstream::openmode mode, MPI_Comm comm, + const std::string engineType = "BPFile"); /** * High-level API MPI constructor, based on C++11 fstream. Allows for @@ -79,9 +79,8 @@ class fstream * std::runtime_error * (system error) */ - fstream(const std::string &name, const adios2::fstream::openmode mode, - MPI_Comm comm, const std::string &configFile, - const std::string ioInConfigFile); + fstream(const std::string &name, const adios2::fstream::openmode mode, MPI_Comm comm, + const std::string &configFile, const std::string ioInConfigFile); #endif /** @@ -177,8 +176,8 @@ class fstream * @exception std::invalid_argument (user input error) or * std::runtime_error (system error) */ - void open(const std::string &name, const openmode mode, - const std::string configFile, const std::string ioInConfigFile); + void open(const std::string &name, const openmode mode, const std::string configFile, + const std::string ioInConfigFile); /** * Set a single stream parameter based on Engine supported parameters. @@ -214,8 +213,7 @@ class fstream */ template void write_attribute(const std::string &name, const T &value, - const std::string &variableName = "", - const std::string separator = "/", + const std::string &variableName = "", const std::string separator = "/", const bool endStep = false); /** @@ -235,10 +233,8 @@ class fstream * Use adios2::endStep for true. */ template - void write_attribute(const std::string &name, const T *data, - const size_t size, - const std::string &variableName = "", - const std::string separator = "/", + void write_attribute(const std::string &name, const T *data, const size_t size, + const std::string &variableName = "", const std::string separator = "/", const bool endStep = false); /** @@ -257,11 +253,9 @@ class fstream * std::runtime_error (system error) */ template - void write(const std::string &name, const T *data, - const adios2::Dims &shape = adios2::Dims(), + void write(const std::string &name, const T *data, const adios2::Dims &shape = adios2::Dims(), const adios2::Dims &start = adios2::Dims(), - const adios2::Dims &count = adios2::Dims(), - const bool endStep = false); + const adios2::Dims &count = adios2::Dims(), const bool endStep = false); /** * write overload that allows passing supported operations @@ -286,10 +280,9 @@ class fstream * std::runtime_error (system error) */ template - void write(const std::string &name, const T *data, - const adios2::Dims &shape, const adios2::Dims &start, - const adios2::Dims &count, const adios2::vParams &operations, - const bool endStep = false); + void write(const std::string &name, const T *data, const adios2::Dims &shape, + const adios2::Dims &start, const adios2::Dims &count, + const adios2::vParams &operations, const bool endStep = false); /** * Write a self-describing single-value variable @@ -303,8 +296,8 @@ class fstream * std::runtime_error (system error) */ template - void write(const std::string &name, const T &value, - const bool isLocalValue = false, const bool endStep = false); + void write(const std::string &name, const T &value, const bool isLocalValue = false, + const bool endStep = false); /** * Reads into a pre-allocated pointer. When @@ -365,8 +358,7 @@ class fstream * found */ template - void read(const std::string &name, T &value, const size_t step, - const size_t blockID = 0); + void read(const std::string &name, T &value, const size_t step, const size_t blockID = 0); /** * Reads into a pre-allocated pointer a selection piece in dimension. When @@ -405,8 +397,8 @@ class fstream */ template void read(const std::string &name, T *data, const adios2::Dims &start, - const adios2::Dims &count, const size_t stepsStart, - const size_t stepsCount, const size_t blockID = 0); + const adios2::Dims &count, const size_t stepsStart, const size_t stepsCount, + const size_t blockID = 0); /** * Reads entire variable for current step (streaming mode: step by step) @@ -455,8 +447,8 @@ class fstream * found */ template - std::vector read(const std::string &name, const Dims &start, - const Dims &count, const size_t blockID = 0); + std::vector read(const std::string &name, const Dims &start, const Dims &count, + const size_t blockID = 0); /** * Reads a selection piece in dimension and a selection piece in steps @@ -476,9 +468,8 @@ class fstream * found */ template - std::vector read(const std::string &name, const Dims &start, - const Dims &count, const size_t stepsStart, - const size_t stepsCount, const size_t blockID = 0); + std::vector read(const std::string &name, const Dims &start, const Dims &count, + const size_t stepsStart, const size_t stepsCount, const size_t blockID = 0); /** * Reads an attribute returning a vector @@ -492,8 +483,7 @@ class fstream * @return vector containing attribute data */ template - std::vector read_attribute(const std::string &name, - const std::string &variableName = "", + std::vector read_attribute(const std::string &name, const std::string &variableName = "", const std::string separator = "/"); /** @@ -536,67 +526,60 @@ class fstream void CheckOpen(const std::string &name) const; }; -#define declare_template_instantiation(T) \ - extern template void fstream::write_attribute( \ - const std::string &, const T &, const std::string &, \ - const std::string, const bool); \ - \ - extern template void fstream::write_attribute( \ - const std::string &, const T *, const size_t, const std::string &, \ - const std::string, const bool); \ - \ - extern template std::vector fstream::read_attribute( \ +#define declare_template_instantiation(T) \ + extern template void fstream::write_attribute( \ + const std::string &, const T &, const std::string &, const std::string, const bool); \ + \ + extern template void fstream::write_attribute(const std::string &, const T *, const size_t, \ + const std::string &, const std::string, \ + const bool); \ + \ + extern template std::vector fstream::read_attribute( \ const std::string &, const std::string &, const std::string); ADIOS2_FOREACH_ATTRIBUTE_TYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation -#define declare_template_instantiation(T) \ - extern template void fstream::write(const std::string &, const T *, \ - const Dims &, const Dims &, \ - const Dims &, const bool); \ - \ - extern template void fstream::write( \ - const std::string &, const T *, const Dims &, const Dims &, \ - const Dims &, const vParams &, const bool); \ - \ - extern template void fstream::write(const std::string &, const T &, \ - const bool, const bool); \ - \ - extern template std::vector fstream::read(const std::string &, \ - const size_t); \ - \ - extern template std::vector fstream::read( \ - const std::string &, const size_t, const size_t, const size_t); \ - \ - extern template std::vector fstream::read( \ - const std::string &, const Dims &, const Dims &, const size_t); \ - \ - extern template std::vector fstream::read( \ - const std::string &, const Dims &, const Dims &, const size_t, \ - const size_t, const size_t); \ - \ - extern template void fstream::read(const std::string &, T *, \ - const size_t); \ - \ - extern template void fstream::read(const std::string &, T *, const size_t, \ - const size_t, const size_t); \ - \ - extern template void fstream::read(const std::string &name, T &, \ - const size_t); \ - \ - extern template void fstream::read(const std::string &name, T &, \ - const size_t); \ - \ - extern template void fstream::read( \ - const std::string &, T *, const Dims &, const Dims &, const size_t); \ - \ - extern template void fstream::read( \ - const std::string &, T *, const size_t, const size_t, const size_t); \ - \ - extern template void fstream::read( \ - const std::string &, T *, const Dims &, const Dims &, const size_t, \ - const size_t, const size_t); +#define declare_template_instantiation(T) \ + extern template void fstream::write(const std::string &, const T *, const Dims &, \ + const Dims &, const Dims &, const bool); \ + \ + extern template void fstream::write(const std::string &, const T *, const Dims &, \ + const Dims &, const Dims &, const vParams &, \ + const bool); \ + \ + extern template void fstream::write(const std::string &, const T &, const bool, \ + const bool); \ + \ + extern template std::vector fstream::read(const std::string &, const size_t); \ + \ + extern template std::vector fstream::read(const std::string &, const size_t, \ + const size_t, const size_t); \ + \ + extern template std::vector fstream::read(const std::string &, const Dims &, \ + const Dims &, const size_t); \ + \ + extern template std::vector fstream::read(const std::string &, const Dims &, \ + const Dims &, const size_t, const size_t, \ + const size_t); \ + \ + extern template void fstream::read(const std::string &, T *, const size_t); \ + \ + extern template void fstream::read(const std::string &, T *, const size_t, const size_t, \ + const size_t); \ + \ + extern template void fstream::read(const std::string &name, T &, const size_t); \ + \ + extern template void fstream::read(const std::string &name, T &, const size_t); \ + \ + extern template void fstream::read(const std::string &, T *, const Dims &, const Dims &, \ + const size_t); \ + \ + extern template void fstream::read(const std::string &, T *, const size_t, const size_t, \ + const size_t); \ + \ + extern template void fstream::read(const std::string &, T *, const Dims &, const Dims &, \ + const size_t, const size_t, const size_t); ADIOS2_FOREACH_TYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation diff --git a/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstream.tcc b/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstream.tcc index e9e258455e..4170515f86 100644 --- a/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstream.tcc +++ b/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstream.tcc @@ -20,52 +20,49 @@ namespace adios2 template void fstream::write_attribute(const std::string &name, const T &value, - const std::string &variableName, - const std::string separator, const bool endStep) + const std::string &variableName, const std::string separator, + const bool endStep) { using IOType = typename TypeInfo::IOType; - m_Stream->WriteAttribute(name, reinterpret_cast(value), - variableName, separator, endStep); + m_Stream->WriteAttribute(name, reinterpret_cast(value), variableName, separator, + endStep); } template -void fstream::write_attribute(const std::string &name, const T *data, - const size_t size, - const std::string &variableName, - const std::string separator, const bool endStep) +void fstream::write_attribute(const std::string &name, const T *data, const size_t size, + const std::string &variableName, const std::string separator, + const bool endStep) { using IOType = typename TypeInfo::IOType; - m_Stream->WriteAttribute(name, reinterpret_cast(data), size, - variableName, separator, endStep); + m_Stream->WriteAttribute(name, reinterpret_cast(data), size, variableName, + separator, endStep); } template -void fstream::write(const std::string &name, const T *data, const Dims &shape, - const Dims &start, const Dims &count, const bool endStep) +void fstream::write(const std::string &name, const T *data, const Dims &shape, const Dims &start, + const Dims &count, const bool endStep) { using IOType = typename TypeInfo::IOType; - m_Stream->Write(name, reinterpret_cast(data), shape, start, - count, vParams(), endStep); + m_Stream->Write(name, reinterpret_cast(data), shape, start, count, vParams(), + endStep); } template -void fstream::write(const std::string &name, const T *data, - const adios2::Dims &shape, const adios2::Dims &start, - const adios2::Dims &count, +void fstream::write(const std::string &name, const T *data, const adios2::Dims &shape, + const adios2::Dims &start, const adios2::Dims &count, const adios2::vParams &operations, const bool endStep) { using IOType = typename TypeInfo::IOType; - m_Stream->Write(name, reinterpret_cast(data), shape, start, - count, operations, endStep); + m_Stream->Write(name, reinterpret_cast(data), shape, start, count, operations, + endStep); } template -void fstream::write(const std::string &name, const T &value, - const bool isLocalValue, const bool endStep) +void fstream::write(const std::string &name, const T &value, const bool isLocalValue, + const bool endStep) { using IOType = typename TypeInfo::IOType; - m_Stream->Write(name, reinterpret_cast(value), isLocalValue, - endStep); + m_Stream->Write(name, reinterpret_cast(value), isLocalValue, endStep); } template @@ -76,12 +73,12 @@ void fstream::read(const std::string &name, T *data, const size_t blockID) } template -void fstream::read(const std::string &name, T *data, const size_t stepStart, - const size_t stepCount, const size_t blockID) +void fstream::read(const std::string &name, T *data, const size_t stepStart, const size_t stepCount, + const size_t blockID) { using IOType = typename TypeInfo::IOType; - m_Stream->Read(name, reinterpret_cast(data), - Box{stepStart, stepCount}, blockID); + m_Stream->Read(name, reinterpret_cast(data), Box{stepStart, stepCount}, + blockID); } template @@ -101,23 +98,19 @@ void fstream::read(const std::string &name, T *data, const Dims &selectionStart, } template -void fstream::read(const std::string &name, T *data, const Dims &start, - const Dims &count, const size_t stepStart, - const size_t stepCount, const size_t blockID) +void fstream::read(const std::string &name, T *data, const Dims &start, const Dims &count, + const size_t stepStart, const size_t stepCount, const size_t blockID) { using IOType = typename TypeInfo::IOType; - m_Stream->Read(name, reinterpret_cast(data), - Box(start, count), Box(stepStart, stepCount), - blockID); + m_Stream->Read(name, reinterpret_cast(data), Box(start, count), + Box(stepStart, stepCount), blockID); } template -void fstream::read(const std::string &name, T &value, const size_t stepStart, - const size_t blockID) +void fstream::read(const std::string &name, T &value, const size_t stepStart, const size_t blockID) { using IOType = typename TypeInfo::IOType; - m_Stream->Read(name, &reinterpret_cast(value), - Box(stepStart, 1), blockID); + m_Stream->Read(name, &reinterpret_cast(value), Box(stepStart, 1), blockID); } template @@ -133,14 +126,13 @@ std::vector fstream::read(const std::string &name, const size_t stepsStart, const size_t stepsCount, const size_t blockID) { using IOType = typename TypeInfo::IOType; - auto vec = m_Stream->Read(name, Box(stepsStart, stepsCount), - blockID); + auto vec = m_Stream->Read(name, Box(stepsStart, stepsCount), blockID); return reinterpret_cast &>(vec); } template -std::vector fstream::read(const std::string &name, const Dims &start, - const Dims &count, const size_t blockID) +std::vector fstream::read(const std::string &name, const Dims &start, const Dims &count, + const size_t blockID) { using IOType = typename TypeInfo::IOType; auto vec = m_Stream->Read(name, Box(start, count), blockID); @@ -148,26 +140,22 @@ std::vector fstream::read(const std::string &name, const Dims &start, } template -std::vector fstream::read(const std::string &name, const Dims &start, - const Dims &count, const size_t stepStart, - const size_t stepCount, const size_t blockID) +std::vector fstream::read(const std::string &name, const Dims &start, const Dims &count, + const size_t stepStart, const size_t stepCount, const size_t blockID) { using IOType = typename TypeInfo::IOType; - auto vec = - m_Stream->Read(name, Box(start, count), - Box(stepStart, stepCount), blockID); + auto vec = m_Stream->Read(name, Box(start, count), + Box(stepStart, stepCount), blockID); return reinterpret_cast &>(vec); } template -std::vector fstream::read_attribute(const std::string &name, - const std::string &variableName, +std::vector fstream::read_attribute(const std::string &name, const std::string &variableName, const std::string separator) { using IOType = typename TypeInfo::IOType; std::vector data; - core::Attribute *attribute = - m_Stream->m_IO->InquireAttribute(name); + core::Attribute *attribute = m_Stream->m_IO->InquireAttribute(name); if (attribute == nullptr) { @@ -175,8 +163,7 @@ std::vector fstream::read_attribute(const std::string &name, } data.resize(attribute->m_Elements); - m_Stream->ReadAttribute(name, reinterpret_cast(data.data()), - variableName, separator); + m_Stream->ReadAttribute(name, reinterpret_cast(data.data()), variableName, separator); return data; } diff --git a/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstreamMPI.cpp b/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstreamMPI.cpp index 38f4e7ef1f..ba0ea4ae99 100644 --- a/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstreamMPI.cpp +++ b/bindings/CXX11/adios2/cxx11/fstream/ADIOS2fstreamMPI.cpp @@ -15,16 +15,14 @@ namespace adios2 fstream::fstream(const std::string &name, const openmode mode, MPI_Comm comm, const std::string engineType) -: m_Stream(std::make_shared( - name, ToMode(mode), helper::CommDupMPI(comm), engineType, "C++")) +: m_Stream(std::make_shared(name, ToMode(mode), helper::CommDupMPI(comm), engineType, + "C++")) { } fstream::fstream(const std::string &name, const openmode mode, MPI_Comm comm, - const std::string &configFile, - const std::string ioInConfigFile) -: m_Stream(std::make_shared(name, ToMode(mode), - helper::CommDupMPI(comm), configFile, + const std::string &configFile, const std::string ioInConfigFile) +: m_Stream(std::make_shared(name, ToMode(mode), helper::CommDupMPI(comm), configFile, ioInConfigFile, "C++")) { } @@ -33,18 +31,16 @@ void fstream::open(const std::string &name, const openmode mode, MPI_Comm comm, const std::string engineType) { CheckOpen(name); - m_Stream = std::make_shared( - name, ToMode(mode), helper::CommDupMPI(comm), engineType, "C++"); + m_Stream = std::make_shared(name, ToMode(mode), helper::CommDupMPI(comm), + engineType, "C++"); } void fstream::open(const std::string &name, const openmode mode, MPI_Comm comm, - const std::string configFile, - const std::string ioInConfigFile) + const std::string configFile, const std::string ioInConfigFile) { CheckOpen(name); - m_Stream = std::make_shared( - name, ToMode(mode), helper::CommDupMPI(comm), configFile, - ioInConfigFile, "C++"); + m_Stream = std::make_shared(name, ToMode(mode), helper::CommDupMPI(comm), + configFile, ioInConfigFile, "C++"); } } // end namespace adios2 diff --git a/bindings/Fortran/f2c/adios2_f2c_adios.cpp b/bindings/Fortran/f2c/adios2_f2c_adios.cpp index 5129208458..da8ac4bf50 100644 --- a/bindings/Fortran/f2c/adios2_f2c_adios.cpp +++ b/bindings/Fortran/f2c/adios2_f2c_adios.cpp @@ -19,8 +19,7 @@ extern adios2_adios *adios2_init_config_glue_serial(const char *config_file, const char *host_language); void FC_GLOBAL(adios2_init_config_serial_f2c, - ADIOS2_INIT_CONFIG_SERIAL_F2C)(adios2_adios **adios, - const char *config_file, + ADIOS2_INIT_CONFIG_SERIAL_F2C)(adios2_adios **adios, const char *config_file, int *ierr) { *adios = adios2_init_config_glue_serial(config_file, "Fortran"); @@ -28,16 +27,14 @@ void FC_GLOBAL(adios2_init_config_serial_f2c, : static_cast(adios2_error_none); } -void FC_GLOBAL(adios2_init_serial_f2c, - ADIOS2_INIT_SERIAL_F2C)(adios2_adios **adios, int *ierr) +void FC_GLOBAL(adios2_init_serial_f2c, ADIOS2_INIT_SERIAL_F2C)(adios2_adios **adios, int *ierr) { FC_GLOBAL(adios2_init_config_serial_f2c, ADIOS2_INIT_CONFIG_SERIAL_F2C) (adios, "", ierr); } -void FC_GLOBAL(adios2_declare_io_f2c, - ADIOS2_DECLARE_IO_F2C)(adios2_io **io, adios2_adios **adios, - const char *name, int *ierr) +void FC_GLOBAL(adios2_declare_io_f2c, ADIOS2_DECLARE_IO_F2C)(adios2_io **io, adios2_adios **adios, + const char *name, int *ierr) { *io = adios2_declare_io(*adios, name); @@ -45,8 +42,7 @@ void FC_GLOBAL(adios2_declare_io_f2c, : static_cast(adios2_error_none); } -void FC_GLOBAL(adios2_at_io_f2c, ADIOS2_at_IO_F2C)(adios2_io **io, - adios2_adios **adios, +void FC_GLOBAL(adios2_at_io_f2c, ADIOS2_at_IO_F2C)(adios2_io **io, adios2_adios **adios, const char *name, int *ierr) { *io = adios2_at_io(*adios, name); @@ -55,10 +51,8 @@ void FC_GLOBAL(adios2_at_io_f2c, ADIOS2_at_IO_F2C)(adios2_io **io, } void FC_GLOBAL(adios2_define_operator_f2c, - ADIOS2_DEFINE_OPERATOR_F2C)(adios2_operator **op, - adios2_adios **adios, - const char *op_name, - const char *op_type, int *ierr) + ADIOS2_DEFINE_OPERATOR_F2C)(adios2_operator **op, adios2_adios **adios, + const char *op_name, const char *op_type, int *ierr) { *op = adios2_define_operator(*adios, op_name, op_type); *ierr = (*op == NULL) ? static_cast(adios2_error_exception) @@ -66,8 +60,7 @@ void FC_GLOBAL(adios2_define_operator_f2c, } void FC_GLOBAL(adios2_inquire_operator_f2c, - ADIOS2_INQUIRE_OPERATOR_F2C)(adios2_operator **op, - adios2_adios **adios, + ADIOS2_INQUIRE_OPERATOR_F2C)(adios2_operator **op, adios2_adios **adios, const char *op_name, int *ierr) { *op = adios2_inquire_operator(*adios, op_name); @@ -75,15 +68,13 @@ void FC_GLOBAL(adios2_inquire_operator_f2c, : static_cast(adios2_error_none); } -void FC_GLOBAL(adios2_flush_all_f2c, ADIOS2_FLUSH_ALL_F2C)(adios2_adios **adios, - int *ierr) +void FC_GLOBAL(adios2_flush_all_f2c, ADIOS2_FLUSH_ALL_F2C)(adios2_adios **adios, int *ierr) { *ierr = static_cast(adios2_flush_all(*adios)); } -void FC_GLOBAL(adios2_remove_io_f2c, - ADIOS2_REMOVE_IO_F2C)(int *result, adios2_adios **adios, - const char *name, int *ierr) +void FC_GLOBAL(adios2_remove_io_f2c, ADIOS2_REMOVE_IO_F2C)(int *result, adios2_adios **adios, + const char *name, int *ierr) { adios2_bool resultC; *ierr = static_cast(adios2_remove_io(&resultC, *adios, name)); @@ -93,28 +84,25 @@ void FC_GLOBAL(adios2_remove_io_f2c, } } -void FC_GLOBAL(adios2_remove_all_ios_f2c, - ADIOS2_REMOVE_ALL_IOS_F2C)(adios2_adios **adios, int *ierr) +void FC_GLOBAL(adios2_remove_all_ios_f2c, ADIOS2_REMOVE_ALL_IOS_F2C)(adios2_adios **adios, + int *ierr) { *ierr = static_cast(adios2_remove_all_ios(*adios)); } -void FC_GLOBAL(adios2_finalize_f2c, ADIOS2_FINALIZE_F2C)(adios2_adios **adios, - int *ierr) +void FC_GLOBAL(adios2_finalize_f2c, ADIOS2_FINALIZE_F2C)(adios2_adios **adios, int *ierr) { *ierr = static_cast(adios2_finalize(*adios)); } void FC_GLOBAL(adios2_enter_computation_block_f2c, - ADIOS2_ENTER_COMPUTATION_BLOCK_F2C)(adios2_adios **adios, - int *ierr) + ADIOS2_ENTER_COMPUTATION_BLOCK_F2C)(adios2_adios **adios, int *ierr) { *ierr = static_cast(adios2_enter_computation_block(*adios)); } void FC_GLOBAL(adios2_exit_computation_block_f2c, - ADIOS2_EXIT_COMPUTATION_BLOCK_F2C)(adios2_adios **adios, - int *ierr) + ADIOS2_EXIT_COMPUTATION_BLOCK_F2C)(adios2_adios **adios, int *ierr) { *ierr = static_cast(adios2_exit_computation_block(*adios)); } diff --git a/bindings/Fortran/f2c/adios2_f2c_adios_mpi.cpp b/bindings/Fortran/f2c/adios2_f2c_adios_mpi.cpp index 0677d76e08..ca5974d96f 100644 --- a/bindings/Fortran/f2c/adios2_f2c_adios_mpi.cpp +++ b/bindings/Fortran/f2c/adios2_f2c_adios_mpi.cpp @@ -12,23 +12,19 @@ extern "C" { // this function is not exposed in the public APIs -extern adios2_adios *adios2_init_config_glue_mpi(const char *config_file, - MPI_Comm comm, +extern adios2_adios *adios2_init_config_glue_mpi(const char *config_file, MPI_Comm comm, const char *host_language); -void FC_GLOBAL(adios2_init_config_mpi_f2c, - ADIOS2_INIT_CONFIG_MPI_F2C)(adios2_adios **adios, - const char *config_file, - MPI_Fint *comm, int *ierr) +void FC_GLOBAL(adios2_init_config_mpi_f2c, ADIOS2_INIT_CONFIG_MPI_F2C)(adios2_adios **adios, + const char *config_file, + MPI_Fint *comm, int *ierr) { - *adios = adios2_init_config_glue_mpi(config_file, MPI_Comm_f2c(*comm), - "Fortran"); + *adios = adios2_init_config_glue_mpi(config_file, MPI_Comm_f2c(*comm), "Fortran"); *ierr = (*adios == NULL) ? static_cast(adios2_error_exception) : static_cast(adios2_error_none); } -void FC_GLOBAL(adios2_init_mpi_f2c, ADIOS2_INIT_MPI_F2C)(adios2_adios **adios, - MPI_Fint *comm, +void FC_GLOBAL(adios2_init_mpi_f2c, ADIOS2_INIT_MPI_F2C)(adios2_adios **adios, MPI_Fint *comm, int *ierr) { FC_GLOBAL(adios2_init_config_mpi_f2c, ADIOS2_INIT_CONFIG_MPI_F2C) diff --git a/bindings/Fortran/f2c/adios2_f2c_attribute.cpp b/bindings/Fortran/f2c/adios2_f2c_attribute.cpp index bec1ee733d..4fa18d8c34 100644 --- a/bindings/Fortran/f2c/adios2_f2c_attribute.cpp +++ b/bindings/Fortran/f2c/adios2_f2c_attribute.cpp @@ -18,30 +18,28 @@ extern "C" { #endif void FC_GLOBAL(adios2_attribute_name_f2c, - ADIOS2_ATTRIBUTE_NAME_F2C)(char *name, - const adios2_attribute **attribute, - int *ierr) + ADIOS2_ATTRIBUTE_NAME_F2C)(char *name, const adios2_attribute **attribute, int *ierr) { size_t sizeC; *ierr = static_cast(adios2_attribute_name(name, &sizeC, *attribute)); } void FC_GLOBAL(adios2_attribute_name_length_f2c, - ADIOS2_ATTRIBUTE_NAME_LENGTH_F2C)( - int *size, const adios2_attribute **attribute, int *ierr) + ADIOS2_ATTRIBUTE_NAME_LENGTH_F2C)(int *size, const adios2_attribute **attribute, + int *ierr) { *size = -1; size_t sizeC; - *ierr = - static_cast(adios2_attribute_name(nullptr, &sizeC, *attribute)); + *ierr = static_cast(adios2_attribute_name(nullptr, &sizeC, *attribute)); if (*ierr == static_cast(adios2_error_none)) { *size = static_cast(sizeC); } } -void FC_GLOBAL(adios2_attribute_is_value_f2c, ADIOS2_ATTRIBUTE_IS_VALUE_F2C)( - int *is_value, const adios2_attribute **attribute, int *ierr) +void FC_GLOBAL(adios2_attribute_is_value_f2c, + ADIOS2_ATTRIBUTE_IS_VALUE_F2C)(int *is_value, const adios2_attribute **attribute, + int *ierr) { adios2_bool isValueC; *ierr = static_cast(adios2_attribute_is_value(&isValueC, *attribute)); @@ -52,9 +50,7 @@ void FC_GLOBAL(adios2_attribute_is_value_f2c, ADIOS2_ATTRIBUTE_IS_VALUE_F2C)( } void FC_GLOBAL(adios2_attribute_type_f2c, - ADIOS2_ATTRIBUTE_TYPE_F2C)(int *type, - const adios2_attribute **attribute, - int *ierr) + ADIOS2_ATTRIBUTE_TYPE_F2C)(int *type, const adios2_attribute **attribute, int *ierr) { *type = -1; adios2_type typeC; @@ -66,8 +62,7 @@ void FC_GLOBAL(adios2_attribute_type_f2c, } void FC_GLOBAL(adios2_attribute_length_f2c, - ADIOS2_ATTRIBUTE_LENGTH_F2C)(int *length, - const adios2_attribute **attribute, + ADIOS2_ATTRIBUTE_LENGTH_F2C)(int *length, const adios2_attribute **attribute, int *ierr) { *length = -1; @@ -80,8 +75,7 @@ void FC_GLOBAL(adios2_attribute_length_f2c, } void FC_GLOBAL(adios2_attribute_value_f2c, - ADIOS2_ATTRIBUTE_VALUE_F2C)(void *data, - const adios2_attribute **attribute, + ADIOS2_ATTRIBUTE_VALUE_F2C)(void *data, const adios2_attribute **attribute, int *ierr) { size_t size = 0; @@ -89,8 +83,7 @@ void FC_GLOBAL(adios2_attribute_value_f2c, } void FC_GLOBAL(adios2_attribute_data_f2c, - ADIOS2_ATTRIBUTE_DATA_F2C)(void *data, int *size, - const adios2_attribute **attribute, + ADIOS2_ATTRIBUTE_DATA_F2C)(void *data, int *size, const adios2_attribute **attribute, int *ierr) { try @@ -102,23 +95,20 @@ void FC_GLOBAL(adios2_attribute_data_f2c, if (type == adios2_type_string) { const adios2::core::Attribute *attributeCpp = - reinterpret_cast *>( - *attribute); + reinterpret_cast *>(*attribute); char *dataT = reinterpret_cast(data); for (auto e = 0; e < *size; ++e) { - attributeCpp->m_DataArray[e].copy( - &dataT[e * adios2_string_array_element_max_size], - attributeCpp->m_DataArray[e].size()); + attributeCpp->m_DataArray[e].copy(&dataT[e * adios2_string_array_element_max_size], + attributeCpp->m_DataArray[e].size()); } } else { size_t sizeC; - *ierr = static_cast( - adios2_attribute_data(data, &sizeC, *attribute)); + *ierr = static_cast(adios2_attribute_data(data, &sizeC, *attribute)); } } catch (...) diff --git a/bindings/Fortran/f2c/adios2_f2c_engine.cpp b/bindings/Fortran/f2c/adios2_f2c_engine.cpp index 8678a3bdb5..ccc01c6b82 100644 --- a/bindings/Fortran/f2c/adios2_f2c_engine.cpp +++ b/bindings/Fortran/f2c/adios2_f2c_engine.cpp @@ -15,17 +15,14 @@ extern "C" { #endif void FC_GLOBAL(adios2_begin_step_f2c, - ADIOS2_BEGIN_STEP_F2C)(adios2_engine **engine, - const int *step_mode, - const float *timeout_seconds, int *status, - int *ierr) + ADIOS2_BEGIN_STEP_F2C)(adios2_engine **engine, const int *step_mode, + const float *timeout_seconds, int *status, int *ierr) { *status = -1; adios2_step_status statusC; - *ierr = static_cast( - adios2_begin_step(*engine, static_cast(*step_mode), - *timeout_seconds, &statusC)); + *ierr = static_cast(adios2_begin_step(*engine, static_cast(*step_mode), + *timeout_seconds, &statusC)); if (*ierr == static_cast(adios2_error_none)) { @@ -34,8 +31,7 @@ void FC_GLOBAL(adios2_begin_step_f2c, } void FC_GLOBAL(adios2_current_step_f2c, - ADIOS2_CURRENT_STEP_F2C)(int64_t *step, - const adios2_engine **engine, int *ierr) + ADIOS2_CURRENT_STEP_F2C)(int64_t *step, const adios2_engine **engine, int *ierr) { *step = -1; size_t stepC; @@ -47,8 +43,7 @@ void FC_GLOBAL(adios2_current_step_f2c, } } -void FC_GLOBAL(adios2_steps_f2c, ADIOS2_STEPS_F2C)(int64_t *steps, - const adios2_engine **engine, +void FC_GLOBAL(adios2_steps_f2c, ADIOS2_STEPS_F2C)(int64_t *steps, const adios2_engine **engine, int *ierr) { *steps = -1; @@ -62,95 +57,82 @@ void FC_GLOBAL(adios2_steps_f2c, ADIOS2_STEPS_F2C)(int64_t *steps, } void FC_GLOBAL(adios2_lock_writer_definitions_f2c, - ADIOS2_LOCK_WRITER_DEFINITIONS_F2C)(adios2_engine **engine, - int *ierr) + ADIOS2_LOCK_WRITER_DEFINITIONS_F2C)(adios2_engine **engine, int *ierr) { *ierr = static_cast(adios2_lock_writer_definitions(*engine)); } void FC_GLOBAL(adios2_lock_reader_selections_f2c, - ADIOS2_LOCK_READER_SELECTIONS_F2C)(adios2_engine **engine, - int *ierr) + ADIOS2_LOCK_READER_SELECTIONS_F2C)(adios2_engine **engine, int *ierr) { *ierr = static_cast(adios2_lock_reader_selections(*engine)); } // ******** PUTS */ -void FC_GLOBAL(adios2_put_f2c, ADIOS2_PUT_F2C)(adios2_engine **engine, - adios2_variable **variable, - const void *data, - const int *launch, int *ierr) +void FC_GLOBAL(adios2_put_f2c, ADIOS2_PUT_F2C)(adios2_engine **engine, adios2_variable **variable, + const void *data, const int *launch, int *ierr) { - *ierr = static_cast(adios2_put(*engine, *variable, data, - static_cast(*launch))); + *ierr = + static_cast(adios2_put(*engine, *variable, data, static_cast(*launch))); } -void FC_GLOBAL(adios2_put_by_name_f2c, - ADIOS2_PUT_BY_NAME_F2C)(adios2_engine **engine, const char *name, - const void *data, const int *launch, - int *ierr) +void FC_GLOBAL(adios2_put_by_name_f2c, ADIOS2_PUT_BY_NAME_F2C)(adios2_engine **engine, + const char *name, const void *data, + const int *launch, int *ierr) { - *ierr = static_cast(adios2_put_by_name( - *engine, name, data, static_cast(*launch))); + *ierr = static_cast( + adios2_put_by_name(*engine, name, data, static_cast(*launch))); } -void FC_GLOBAL(adios2_perform_puts_f2c, - ADIOS2_PERFORM_PUTS_F2C)(adios2_engine **engine, int *ierr) +void FC_GLOBAL(adios2_perform_puts_f2c, ADIOS2_PERFORM_PUTS_F2C)(adios2_engine **engine, int *ierr) { *ierr = static_cast(adios2_perform_puts(*engine)); } -void FC_GLOBAL(adios2_perform_data_write_f2c, - ADIOS2_PERFORM_DATA_WRITE_F2C)(adios2_engine **engine, int *ierr) +void FC_GLOBAL(adios2_perform_data_write_f2c, ADIOS2_PERFORM_DATA_WRITE_F2C)(adios2_engine **engine, + int *ierr) { *ierr = static_cast(adios2_perform_data_write(*engine)); } // ******** GETS */ -void FC_GLOBAL(adios2_get_f2c, ADIOS2_get_F2C)(adios2_engine **engine, - adios2_variable **variable, - void *data, const int *launch, - int *ierr) +void FC_GLOBAL(adios2_get_f2c, ADIOS2_get_F2C)(adios2_engine **engine, adios2_variable **variable, + void *data, const int *launch, int *ierr) { - *ierr = static_cast(adios2_get(*engine, *variable, data, - static_cast(*launch))); + *ierr = + static_cast(adios2_get(*engine, *variable, data, static_cast(*launch))); } -void FC_GLOBAL(adios2_get_by_name_f2c, - ADIOS2_get_BY_NAME_F2C)(adios2_engine **engine, const char *name, - void *data, const int *launch, int *ierr) +void FC_GLOBAL(adios2_get_by_name_f2c, ADIOS2_get_BY_NAME_F2C)(adios2_engine **engine, + const char *name, void *data, + const int *launch, int *ierr) { - *ierr = static_cast(adios2_get_by_name( - *engine, name, data, static_cast(*launch))); + *ierr = static_cast( + adios2_get_by_name(*engine, name, data, static_cast(*launch))); } -void FC_GLOBAL(adios2_perform_gets_f2c, - ADIOS2_PERFORM_GETS_F2C)(adios2_engine **engine, int *ierr) +void FC_GLOBAL(adios2_perform_gets_f2c, ADIOS2_PERFORM_GETS_F2C)(adios2_engine **engine, int *ierr) { *ierr = static_cast(adios2_perform_gets(*engine)); } -void FC_GLOBAL(adios2_end_step_f2c, ADIOS2_END_STEP_F2C)(adios2_engine **engine, - int *ierr) +void FC_GLOBAL(adios2_end_step_f2c, ADIOS2_END_STEP_F2C)(adios2_engine **engine, int *ierr) { *ierr = static_cast(adios2_end_step(*engine)); } -void FC_GLOBAL(adios2_flush_f2c, ADIOS2_FLUSH_F2C)(adios2_engine **engine, - int *ierr) +void FC_GLOBAL(adios2_flush_f2c, ADIOS2_FLUSH_F2C)(adios2_engine **engine, int *ierr) { *ierr = static_cast(adios2_flush(*engine)); } -void FC_GLOBAL(adios2_close_f2c, ADIOS2_CLOSE_F2C)(adios2_engine **engine, - int *ierr) +void FC_GLOBAL(adios2_close_f2c, ADIOS2_CLOSE_F2C)(adios2_engine **engine, int *ierr) { *ierr = static_cast(adios2_close(*engine)); } void FC_GLOBAL(adios2_engine_get_type_f2c, - ADIOS2_ENGINE_GET_TYPE_F2C)(char *type, adios2_engine **engine, - int *ierr) + ADIOS2_ENGINE_GET_TYPE_F2C)(char *type, adios2_engine **engine, int *ierr) { size_t size; *ierr = static_cast(adios2_engine_get_type(type, &size, *engine)); diff --git a/bindings/Fortran/f2c/adios2_f2c_io.cpp b/bindings/Fortran/f2c/adios2_f2c_io.cpp index 74234501c4..ef3899d5a0 100644 --- a/bindings/Fortran/f2c/adios2_f2c_io.cpp +++ b/bindings/Fortran/f2c/adios2_f2c_io.cpp @@ -23,8 +23,7 @@ extern "C" { #endif void FC_GLOBAL(adios2_in_config_file_f2c, - ADIOS2_IN_CONFIG_FILE_F2C)(int *result, const adios2_io **io, - int *ierr) + ADIOS2_IN_CONFIG_FILE_F2C)(int *result, const adios2_io **io, int *ierr) { adios2_bool resultC; *ierr = static_cast(adios2_in_config_file(&resultC, *io)); @@ -34,38 +33,35 @@ void FC_GLOBAL(adios2_in_config_file_f2c, } } -void FC_GLOBAL(adios2_set_engine_f2c, - ADIOS2_SET_ENGINE_F2C)(adios2_io **io, const char *engine_type, - int *ierr) +void FC_GLOBAL(adios2_set_engine_f2c, ADIOS2_SET_ENGINE_F2C)(adios2_io **io, + const char *engine_type, int *ierr) { *ierr = static_cast(adios2_set_engine(*io, engine_type)); } void FC_GLOBAL(adios2_set_parameters_f2c, - ADIOS2_SET_PARAMETERS_F2C)(adios2_io **io, - const char *parameters, int *ierr) + ADIOS2_SET_PARAMETERS_F2C)(adios2_io **io, const char *parameters, int *ierr) { *ierr = static_cast(adios2_set_parameters(*io, parameters)); } -void FC_GLOBAL(adios2_set_parameter_f2c, - ADIOS2_SET_PARAMETER_F2C)(adios2_io **io, const char *key, - const char *value, int *ierr) +void FC_GLOBAL(adios2_set_parameter_f2c, ADIOS2_SET_PARAMETER_F2C)(adios2_io **io, const char *key, + const char *value, int *ierr) { *ierr = static_cast(adios2_set_parameter(*io, key, value)); } -void FC_GLOBAL(adios2_get_parameter_f2c, - ADIOS2_GET_PARAMETER_F2C)(char *value, const adios2_io **io, - const char *key, int *ierr) +void FC_GLOBAL(adios2_get_parameter_f2c, ADIOS2_GET_PARAMETER_F2C)(char *value, + const adios2_io **io, + const char *key, int *ierr) { size_t sizeC; *ierr = static_cast(adios2_get_parameter(value, &sizeC, *io, key)); } void FC_GLOBAL(adios2_get_parameter_length_f2c, - ADIOS2_GET_PARAMETER_LENGTH_F2C)(int *size, const adios2_io **io, - const char *key, int *ierr) + ADIOS2_GET_PARAMETER_LENGTH_F2C)(int *size, const adios2_io **io, const char *key, + int *ierr) { *size = -1; size_t sizeC; @@ -76,8 +72,7 @@ void FC_GLOBAL(adios2_get_parameter_length_f2c, } } -void FC_GLOBAL(adios2_clear_parameters_f2c, - ADIOS2_CLEAR_PARAMETERS_F2C)(adios2_io **io, int *ierr) +void FC_GLOBAL(adios2_clear_parameters_f2c, ADIOS2_CLEAR_PARAMETERS_F2C)(adios2_io **io, int *ierr) { *ierr = static_cast(adios2_clear_parameters(*io)); } @@ -89,8 +84,7 @@ void FC_GLOBAL(adios2_add_transport_f2c, *transport_index = -1; std::size_t transport_indexC; - *ierr = static_cast( - adios2_add_transport(&transport_indexC, *io, transport_type)); + *ierr = static_cast(adios2_add_transport(&transport_indexC, *io, transport_type)); if (*ierr == static_cast(adios2_error_none)) { *transport_index = static_cast(transport_indexC); @@ -98,10 +92,8 @@ void FC_GLOBAL(adios2_add_transport_f2c, } void FC_GLOBAL(adios2_set_transport_parameter_f2c, - ADIOS2_SET_TRANSPORT_PARAMETER_F2C)(adios2_io **io, - const int *transport_index, - const char *key, - const char *value, int *ierr) + ADIOS2_SET_TRANSPORT_PARAMETER_F2C)(adios2_io **io, const int *transport_index, + const char *key, const char *value, int *ierr) { if (*transport_index < 0) { @@ -109,31 +101,27 @@ void FC_GLOBAL(adios2_set_transport_parameter_f2c, "in call to " "adios2_set_transport_parameter"); } - const std::size_t transport_indexC = - static_cast(*transport_index); - *ierr = static_cast( - adios2_set_transport_parameter(*io, transport_indexC, key, value)); + const std::size_t transport_indexC = static_cast(*transport_index); + *ierr = static_cast(adios2_set_transport_parameter(*io, transport_indexC, key, value)); } // needed due to lack of nullptr in Fortran void FC_GLOBAL(adios2_define_global_variable_f2c, - ADIOS2_DEFINE_GLOBAL_VARIABLE_F2C)(adios2_variable **variable, - adios2_io **io, - const char *name, - const int *type, int *ierr) + ADIOS2_DEFINE_GLOBAL_VARIABLE_F2C)(adios2_variable **variable, adios2_io **io, + const char *name, const int *type, int *ierr) { - *variable = adios2_define_variable( - *io, name, static_cast(*type), 0, nullptr, nullptr, - nullptr, adios2_constant_dims_true); + *variable = adios2_define_variable(*io, name, static_cast(*type), 0, nullptr, + nullptr, nullptr, adios2_constant_dims_true); *ierr = (*variable == NULL) ? static_cast(adios2_error_exception) : static_cast(adios2_error_none); } -void FC_GLOBAL(adios2_define_variable_f2c, ADIOS2_DEFINE_VARIABLE_F2C)( - adios2_variable **variable, adios2_io **io, const char *name, - const int *type, const int *ndims, const int64_t *shape, - const int64_t *start, const int64_t *count, const int *constant_dims, - int *ierr) +void FC_GLOBAL(adios2_define_variable_f2c, + ADIOS2_DEFINE_VARIABLE_F2C)(adios2_variable **variable, adios2_io **io, + const char *name, const int *type, const int *ndims, + const int64_t *shape, const int64_t *start, + const int64_t *count, const int *constant_dims, + int *ierr) { auto lf_IntToSizeT = [](const int64_t *dimensions, const int size, const std::string hint) -> adios2::Dims { @@ -143,9 +131,8 @@ void FC_GLOBAL(adios2_define_variable_f2c, ADIOS2_DEFINE_VARIABLE_F2C)( { if (dimensions[d] < 0) { - throw std::invalid_argument( - "ERROR: negative dimension " + hint + - ", in call to adios2_define_variable"); + throw std::invalid_argument("ERROR: negative dimension " + hint + + ", in call to adios2_define_variable"); } output[d] = dimensions[d]; } @@ -156,9 +143,8 @@ void FC_GLOBAL(adios2_define_variable_f2c, ADIOS2_DEFINE_VARIABLE_F2C)( { if (*ndims <= 0) { - throw std::invalid_argument( - "ERROR: negative ndims in Fortran, in call to " - "adios2_define_variable"); + throw std::invalid_argument("ERROR: negative ndims in Fortran, in call to " + "adios2_define_variable"); } // Check for local value @@ -170,12 +156,10 @@ void FC_GLOBAL(adios2_define_variable_f2c, ADIOS2_DEFINE_VARIABLE_F2C)( shapeC[0] = adios2_local_value_dim; *variable = adios2_define_variable( - *io, name, static_cast(*type), *ndims, shapeC, - nullptr, nullptr, + *io, name, static_cast(*type), *ndims, shapeC, nullptr, nullptr, static_cast(*constant_dims)); - *ierr = (*variable == NULL) - ? static_cast(adios2_error_exception) - : static_cast(adios2_error_none); + *ierr = (*variable == NULL) ? static_cast(adios2_error_exception) + : static_cast(adios2_error_none); return; } } @@ -184,22 +168,19 @@ void FC_GLOBAL(adios2_define_variable_f2c, ADIOS2_DEFINE_VARIABLE_F2C)( { if (start[0] != -1) { - throw std::invalid_argument( - "ERROR: both shape and start must be " - "adios2_null_dims when declaring " - "local variables in Fortran, in call to " - "adios2_define_variable"); + throw std::invalid_argument("ERROR: both shape and start must be " + "adios2_null_dims when declaring " + "local variables in Fortran, in call to " + "adios2_define_variable"); } const adios2::Dims countV = lf_IntToSizeT(count, *ndims, "count"); - *variable = adios2_define_variable( - *io, name, static_cast(*type), *ndims, nullptr, - nullptr, countV.data(), - static_cast(*constant_dims)); - *ierr = (*variable == NULL) - ? static_cast(adios2_error_exception) - : static_cast(adios2_error_none); + *variable = adios2_define_variable(*io, name, static_cast(*type), *ndims, + nullptr, nullptr, countV.data(), + static_cast(*constant_dims)); + *ierr = (*variable == NULL) ? static_cast(adios2_error_exception) + : static_cast(adios2_error_none); return; } @@ -207,17 +188,16 @@ void FC_GLOBAL(adios2_define_variable_f2c, ADIOS2_DEFINE_VARIABLE_F2C)( const adios2::Dims startV = lf_IntToSizeT(start, *ndims, "start"); const adios2::Dims countV = lf_IntToSizeT(count, *ndims, "count"); - *variable = adios2_define_variable( - *io, name, static_cast(*type), - static_cast(*ndims), shapeV.data(), startV.data(), - countV.data(), static_cast(*constant_dims)); + *variable = adios2_define_variable(*io, name, static_cast(*type), + static_cast(*ndims), shapeV.data(), + startV.data(), countV.data(), + static_cast(*constant_dims)); *ierr = (*variable == NULL) ? static_cast(adios2_error_exception) : static_cast(adios2_error_none); } catch (std::exception &e) { - *ierr = static_cast( - adios2::helper::ExceptionToError("adios2_define_variable")); + *ierr = static_cast(adios2::helper::ExceptionToError("adios2_define_variable")); } } @@ -228,9 +208,7 @@ struct cnamelist }; void FC_GLOBAL(adios2_available_variables_f2c, - ADIOS2_AVAILABLE_VARIABLES_F2C)(adios2_io **io, - int64_t *namestruct, - int *vars_count, + ADIOS2_AVAILABLE_VARIABLES_F2C)(adios2_io **io, int64_t *namestruct, int *vars_count, int *max_var_name_len, int *ierr) { cnamelist *info = new (cnamelist); @@ -251,11 +229,8 @@ void FC_GLOBAL(adios2_available_variables_f2c, } void FC_GLOBAL(adios2_available_attributes_f2c, - ADIOS2_AVAILABLE_ATTRIBUTES_F2C)(adios2_io **io, - int64_t *namestruct, - int *attrs_count, - int *max_attr_name_len, - int *ierr) + ADIOS2_AVAILABLE_ATTRIBUTES_F2C)(adios2_io **io, int64_t *namestruct, + int *attrs_count, int *max_attr_name_len, int *ierr) { cnamelist *info = new (cnamelist); info->names = adios2_available_attributes(*io, &info->count); @@ -277,8 +252,7 @@ void FC_GLOBAL(adios2_available_attributes_f2c, } void FC_GLOBAL(adios2_retrieve_namelist_f2c, - ADIOS2_RETRIEVE_NAMELIST_F2C)(int64_t *namestruct, - void *namelist, int *ierr, + ADIOS2_RETRIEVE_NAMELIST_F2C)(int64_t *namestruct, void *namelist, int *ierr, int namelist_len) { cnamelist *info = reinterpret_cast(*namestruct); @@ -308,9 +282,8 @@ void FC_GLOBAL(adios2_retrieve_namelist_f2c, } void FC_GLOBAL(adios2_inquire_variable_f2c, - ADIOS2_INQUIRE_VARIABLE_F2C)(adios2_variable **variable, - adios2_io **io, const char *name, - int *ierr) + ADIOS2_INQUIRE_VARIABLE_F2C)(adios2_variable **variable, adios2_io **io, + const char *name, int *ierr) { *variable = adios2_inquire_variable(*io, name); @@ -318,9 +291,8 @@ void FC_GLOBAL(adios2_inquire_variable_f2c, : static_cast(adios2_error_none); } -void FC_GLOBAL(adios2_remove_variable_f2c, - ADIOS2_REMOVE_VARIABLE_F2C)(int *result, adios2_io **io, - const char *name, int *ierr) +void FC_GLOBAL(adios2_remove_variable_f2c, ADIOS2_REMOVE_VARIABLE_F2C)(int *result, adios2_io **io, + const char *name, int *ierr) { adios2_bool resultC; *ierr = static_cast(adios2_remove_variable(&resultC, *io, name)); @@ -330,40 +302,37 @@ void FC_GLOBAL(adios2_remove_variable_f2c, } } -void FC_GLOBAL(adios2_remove_all_variables_f2c, - ADIOS2_REMOVE_ALL_VARIABLES_F2C)(adios2_io **io, int *ierr) +void FC_GLOBAL(adios2_remove_all_variables_f2c, ADIOS2_REMOVE_ALL_VARIABLES_F2C)(adios2_io **io, + int *ierr) { *ierr = static_cast(adios2_remove_all_variables(*io)); } void FC_GLOBAL(adios2_define_vattr_f2c, - ADIOS2_DEFINE_VATTR_F2C)(adios2_attribute **attribute, - adios2_io **io, const char *name, - const int *type, const void *value, - const char *variable_name, - const char *separator, int *ierr) + ADIOS2_DEFINE_VATTR_F2C)(adios2_attribute **attribute, adios2_io **io, + const char *name, const int *type, const void *value, + const char *variable_name, const char *separator, int *ierr) { - *attribute = adios2_define_variable_attribute( - *io, name, static_cast(*type), value, variable_name, - separator); + *attribute = adios2_define_variable_attribute(*io, name, static_cast(*type), value, + variable_name, separator); *ierr = (*attribute == NULL) ? static_cast(adios2_error_exception) : static_cast(adios2_error_none); } -void FC_GLOBAL(adios2_define_vattr_array_f2c, ADIOS2_DEFINE_VATTR_ARRAY_F2C)( - adios2_attribute **attribute, adios2_io **io, const char *name, - const int *type, const void *data, const int *size, - const char *variable_name, const char *separator, int *ierr) +void FC_GLOBAL(adios2_define_vattr_array_f2c, + ADIOS2_DEFINE_VATTR_ARRAY_F2C)(adios2_attribute **attribute, adios2_io **io, + const char *name, const int *type, const void *data, + const int *size, const char *variable_name, + const char *separator, int *ierr) { try { if (*size < 1) { - throw std::invalid_argument( - "ERROR: attribute " + std::string(name) + - " array size must be larger or equal to 1, in call to " - "adios2_define_attribute\n"); + throw std::invalid_argument("ERROR: attribute " + std::string(name) + + " array size must be larger or equal to 1, in call to " + "adios2_define_attribute\n"); } if (*type == adios2_type_string) @@ -376,17 +345,13 @@ void FC_GLOBAL(adios2_define_vattr_array_f2c, ADIOS2_DEFINE_VATTR_ARRAY_F2C)( { char2D[i] = new char[adios2_string_array_element_max_size]; - const char *fstringMemory = - reinterpret_cast(data); + const char *fstringMemory = reinterpret_cast(data); - strcpy( - char2D[i], - &fstringMemory[i * adios2_string_array_element_max_size]); + strcpy(char2D[i], &fstringMemory[i * adios2_string_array_element_max_size]); } *attribute = adios2_define_variable_attribute_array( - *io, name, static_cast(*type), - static_cast(char2D), + *io, name, static_cast(*type), static_cast(char2D), static_cast(*size), variable_name, separator); delete[] char2D; @@ -394,8 +359,8 @@ void FC_GLOBAL(adios2_define_vattr_array_f2c, ADIOS2_DEFINE_VATTR_ARRAY_F2C)( else { *attribute = adios2_define_variable_attribute_array( - *io, name, static_cast(*type), data, - static_cast(*size), variable_name, separator); + *io, name, static_cast(*type), data, static_cast(*size), + variable_name, separator); } *ierr = (*attribute == NULL) ? static_cast(adios2_error_exception) : static_cast(adios2_error_none); @@ -407,10 +372,8 @@ void FC_GLOBAL(adios2_define_vattr_array_f2c, ADIOS2_DEFINE_VATTR_ARRAY_F2C)( } void FC_GLOBAL(adios2_inquire_attribute_f2c, - ADIOS2_INQUIRE_ATTRIBUTE_F2C)(adios2_attribute **attribute, - adios2_io **io, - const char *attribute_name, - int *ierr) + ADIOS2_INQUIRE_ATTRIBUTE_F2C)(adios2_attribute **attribute, adios2_io **io, + const char *attribute_name, int *ierr) { *attribute = adios2_inquire_attribute(*io, attribute_name); *ierr = (*attribute == NULL) ? static_cast(adios2_error_exception) @@ -418,19 +381,19 @@ void FC_GLOBAL(adios2_inquire_attribute_f2c, } void FC_GLOBAL(adios2_inquire_variable_attribute_f2c, - ADIOS2_INQUIRE_VARIABLE_ATTRIBUTE_F2C)( - adios2_attribute **attribute, adios2_io **io, const char *attribute_name, - const char *variable_name, const char *separator, int *ierr) + ADIOS2_INQUIRE_VARIABLE_ATTRIBUTE_F2C)(adios2_attribute **attribute, adios2_io **io, + const char *attribute_name, + const char *variable_name, + const char *separator, int *ierr) { - *attribute = adios2_inquire_variable_attribute(*io, attribute_name, - variable_name, separator); + *attribute = adios2_inquire_variable_attribute(*io, attribute_name, variable_name, separator); *ierr = (*attribute == NULL) ? static_cast(adios2_error_exception) : static_cast(adios2_error_none); } void FC_GLOBAL(adios2_remove_attribute_f2c, - ADIOS2_REMOVE_ATTRIBUTE_F2C)(int *result, adios2_io **io, - const char *name, int *ierr) + ADIOS2_REMOVE_ATTRIBUTE_F2C)(int *result, adios2_io **io, const char *name, + int *ierr) { adios2_bool resultC; *ierr = static_cast(adios2_remove_attribute(&resultC, *io, name)); @@ -440,40 +403,35 @@ void FC_GLOBAL(adios2_remove_attribute_f2c, } } -void FC_GLOBAL(adios2_remove_all_attributes_f2c, - ADIOS2_REMOVE_ALL_ATTRIBUTES_F2C)(adios2_io **io, int *ierr) +void FC_GLOBAL(adios2_remove_all_attributes_f2c, ADIOS2_REMOVE_ALL_ATTRIBUTES_F2C)(adios2_io **io, + int *ierr) { *ierr = static_cast(adios2_remove_all_attributes(*io)); } -void FC_GLOBAL(adios2_open_f2c, - ADIOS2_OPEN_F2C)(adios2_engine **engine, adios2_io **io, - const char *name, const int *open_mode, - int *ierr) +void FC_GLOBAL(adios2_open_f2c, ADIOS2_OPEN_F2C)(adios2_engine **engine, adios2_io **io, + const char *name, const int *open_mode, int *ierr) { *engine = adios2_open(*io, name, static_cast(*open_mode)); *ierr = (*engine == NULL) ? static_cast(adios2_error_exception) : static_cast(adios2_error_none); } -void FC_GLOBAL(adios2_flush_all_engines_f2c, - ADIOS2_FLUSH_ALL_ENGINES_F2C)(adios2_io **io, int *ierr) +void FC_GLOBAL(adios2_flush_all_engines_f2c, ADIOS2_FLUSH_ALL_ENGINES_F2C)(adios2_io **io, + int *ierr) { *ierr = static_cast(adios2_flush_all_engines(*io)); } void FC_GLOBAL(adios2_io_engine_type_f2c, - ADIOS2_IO_ENGINE_TYPE_F2C)(char *type, const adios2_io **io, - int *ierr) + ADIOS2_IO_ENGINE_TYPE_F2C)(char *type, const adios2_io **io, int *ierr) { size_t sizeC; *ierr = static_cast(adios2_engine_type(type, &sizeC, *io)); } void FC_GLOBAL(adios2_io_engine_type_length_f2c, - ADIOS2_io_ENGINE_TYPE_LENGTH_F2C)(int *size, - const adios2_io **io, - int *ierr) + ADIOS2_io_ENGINE_TYPE_LENGTH_F2C)(int *size, const adios2_io **io, int *ierr) { *size = -1; size_t sizeC; diff --git a/bindings/Fortran/f2c/adios2_f2c_io_mpi.cpp b/bindings/Fortran/f2c/adios2_f2c_io_mpi.cpp index 1953a3c870..d4dd8bd18a 100644 --- a/bindings/Fortran/f2c/adios2_f2c_io_mpi.cpp +++ b/bindings/Fortran/f2c/adios2_f2c_io_mpi.cpp @@ -12,17 +12,15 @@ extern "C" { -extern adios2_engine *adios2_open_new_comm(adios2_io *io, const char *name, - const adios2_mode mode, +extern adios2_engine *adios2_open_new_comm(adios2_io *io, const char *name, const adios2_mode mode, MPI_Comm comm); void FC_GLOBAL(adios2_open_new_comm_f2c, - ADIOS2_OPEN_NEW_COMM_F2C)(adios2_engine **engine, adios2_io **io, - const char *name, const int *open_mode, - MPI_Fint *comm, int *ierr) + ADIOS2_OPEN_NEW_COMM_F2C)(adios2_engine **engine, adios2_io **io, const char *name, + const int *open_mode, MPI_Fint *comm, int *ierr) { - *engine = adios2_open_new_comm( - *io, name, static_cast(*open_mode), MPI_Comm_f2c(*comm)); + *engine = + adios2_open_new_comm(*io, name, static_cast(*open_mode), MPI_Comm_f2c(*comm)); *ierr = (*engine == NULL) ? static_cast(adios2_error_exception) : static_cast(adios2_error_none); } diff --git a/bindings/Fortran/f2c/adios2_f2c_operator.cpp b/bindings/Fortran/f2c/adios2_f2c_operator.cpp index 1168d54602..9341a11df3 100644 --- a/bindings/Fortran/f2c/adios2_f2c_operator.cpp +++ b/bindings/Fortran/f2c/adios2_f2c_operator.cpp @@ -15,17 +15,14 @@ extern "C" { #endif void FC_GLOBAL(adios2_operator_type_f2c, - ADIOS2_OPERATOR_TYPE_F2C)(char *type, const adios2_operator **op, - int *ierr) + ADIOS2_OPERATOR_TYPE_F2C)(char *type, const adios2_operator **op, int *ierr) { size_t sizeC; *ierr = static_cast(adios2_operator_type(type, &sizeC, *op)); } void FC_GLOBAL(adios2_operator_type_length_f2c, - ADIOS2_OPERATOR_TYPE_LENGTH_F2C)(int *size, - const adios2_operator **op, - int *ierr) + ADIOS2_OPERATOR_TYPE_LENGTH_F2C)(int *size, const adios2_operator **op, int *ierr) { *size = -1; size_t sizeC; diff --git a/bindings/Fortran/f2c/adios2_f2c_variable.cpp b/bindings/Fortran/f2c/adios2_f2c_variable.cpp index 79bf50a3a6..b03ac1ef84 100644 --- a/bindings/Fortran/f2c/adios2_f2c_variable.cpp +++ b/bindings/Fortran/f2c/adios2_f2c_variable.cpp @@ -17,17 +17,15 @@ extern "C" { #endif void FC_GLOBAL(adios2_variable_name_f2c, - ADIOS2_VARIABLE_NAME_F2C)(char *name, - const adios2_variable **variable, - int *ierr) + ADIOS2_VARIABLE_NAME_F2C)(char *name, const adios2_variable **variable, int *ierr) { size_t sizeC; *ierr = static_cast(adios2_variable_name(name, &sizeC, *variable)); } void FC_GLOBAL(adios2_variable_name_length_f2c, - ADIOS2_VARIABLE_NAME_LENGTH_F2C)( - int *size, const adios2_variable **variable, int *ierr) + ADIOS2_VARIABLE_NAME_LENGTH_F2C)(int *size, const adios2_variable **variable, + int *ierr) { *size = -1; size_t sizeC; @@ -39,9 +37,7 @@ void FC_GLOBAL(adios2_variable_name_length_f2c, } void FC_GLOBAL(adios2_variable_type_f2c, - ADIOS2_VARIABLE_TYPE_F2C)(int *type, - const adios2_variable **variable, - int *ierr) + ADIOS2_VARIABLE_TYPE_F2C)(int *type, const adios2_variable **variable, int *ierr) { *type = -1; adios2_type typeC; @@ -53,9 +49,7 @@ void FC_GLOBAL(adios2_variable_type_f2c, } void FC_GLOBAL(adios2_variable_ndims_f2c, - ADIOS2_VARIABLE_NDIMS_F2C)(int *ndims, - const adios2_variable **variable, - int *ierr) + ADIOS2_VARIABLE_NDIMS_F2C)(int *ndims, const adios2_variable **variable, int *ierr) { *ndims = -1; size_t ndimsC; @@ -67,8 +61,7 @@ void FC_GLOBAL(adios2_variable_ndims_f2c, } void FC_GLOBAL(adios2_variable_shape_f2c, - ADIOS2_VARIABLE_SHAPE_F2C)(int64_t *shape, - const adios2_variable **variable, + ADIOS2_VARIABLE_SHAPE_F2C)(int64_t *shape, const adios2_variable **variable, int *ierr) { size_t ndims; @@ -92,8 +85,7 @@ void FC_GLOBAL(adios2_variable_shape_f2c, } void FC_GLOBAL(adios2_variable_steps_f2c, - adios2_variable_STEPS_F2C)(int64_t *steps, - const adios2_variable **variable, + adios2_variable_STEPS_F2C)(int64_t *steps, const adios2_variable **variable, int *ierr) { *steps = -1; @@ -105,10 +97,9 @@ void FC_GLOBAL(adios2_variable_steps_f2c, } } -void FC_GLOBAL(adios2_set_shape_f2c, - ADIOS2_SET_SHAPE_F2C)(adios2_variable **variable, - const int *ndims, const int64_t *shape, - int *ierr) +void FC_GLOBAL(adios2_set_shape_f2c, ADIOS2_SET_SHAPE_F2C)(adios2_variable **variable, + const int *ndims, const int64_t *shape, + int *ierr) { auto lf_IntToSizeT = [](const int64_t *dimensions, const int size, std::vector &output) { @@ -130,31 +121,26 @@ void FC_GLOBAL(adios2_set_shape_f2c, } std::vector shapeV; lf_IntToSizeT(shape, *ndims, shapeV); - *ierr = static_cast( - adios2_set_shape(*variable, *ndims, shapeV.data())); + *ierr = static_cast(adios2_set_shape(*variable, *ndims, shapeV.data())); } catch (...) { - *ierr = static_cast( - adios2::helper::ExceptionToError("adios2_set_shape")); + *ierr = static_cast(adios2::helper::ExceptionToError("adios2_set_shape")); } } void FC_GLOBAL(adios2_set_block_selection_f2c, - ADIOS2_SET_BLOCK_SELECTION_F2C)(adios2_variable **variable, - const int64_t *block_id, + ADIOS2_SET_BLOCK_SELECTION_F2C)(adios2_variable **variable, const int64_t *block_id, int *ierr) { *ierr = static_cast(adios2_set_block_selection(*variable, *block_id)); } void FC_GLOBAL(adios2_set_selection_f2c, - ADIOS2_SET_SELECTION_F2C)(adios2_variable **variable, - const int *ndims, const int64_t *start, - const int64_t *count, int *ierr) + ADIOS2_SET_SELECTION_F2C)(adios2_variable **variable, const int *ndims, + const int64_t *start, const int64_t *count, int *ierr) { - auto lf_IntToSizeT = [](const int64_t *input, - const int size) -> std::vector { + auto lf_IntToSizeT = [](const int64_t *input, const int size) -> std::vector { std::vector output; output.reserve(size); @@ -184,31 +170,27 @@ void FC_GLOBAL(adios2_set_selection_f2c, // local array selection if (start[0] == -1) { - *ierr = static_cast(adios2_set_selection( - *variable, *ndims, nullptr, countV.data())); + *ierr = + static_cast(adios2_set_selection(*variable, *ndims, nullptr, countV.data())); } // global array selection else { - const std::vector startV = - lf_IntToSizeT(start, *ndims); - *ierr = static_cast(adios2_set_selection( - *variable, *ndims, startV.data(), countV.data())); + const std::vector startV = lf_IntToSizeT(start, *ndims); + *ierr = static_cast( + adios2_set_selection(*variable, *ndims, startV.data(), countV.data())); } } catch (...) { - *ierr = static_cast( - adios2::helper::ExceptionToError("adios2_set_selection")); + *ierr = static_cast(adios2::helper::ExceptionToError("adios2_set_selection")); } } void FC_GLOBAL(adios2_set_memory_selection_f2c, - ADIOS2_SET_MEMORY_SELECTION_F2C)(adios2_variable **variable, - const int *ndims, + ADIOS2_SET_MEMORY_SELECTION_F2C)(adios2_variable **variable, const int *ndims, const int64_t *memory_start, - const int64_t *memory_count, - int *ierr) + const int64_t *memory_count, int *ierr) { auto lf_IntToSizeT = [](const int64_t *dimensions, const int size, std::vector &output) { @@ -222,8 +204,7 @@ void FC_GLOBAL(adios2_set_memory_selection_f2c, try { - if (memory_start == nullptr || memory_count == nullptr || - ndims == nullptr) + if (memory_start == nullptr || memory_count == nullptr || ndims == nullptr) { throw std::invalid_argument("ERROR: either start_dims, count_dims " "or ndims is a null pointer, in call " @@ -232,30 +213,26 @@ void FC_GLOBAL(adios2_set_memory_selection_f2c, std::vector memoryStartV, memoryCountV; lf_IntToSizeT(memory_start, *ndims, memoryStartV); lf_IntToSizeT(memory_count, *ndims, memoryCountV); - *ierr = static_cast(adios2_set_memory_selection( - *variable, *ndims, memoryStartV.data(), memoryCountV.data())); + *ierr = static_cast(adios2_set_memory_selection(*variable, *ndims, memoryStartV.data(), + memoryCountV.data())); } catch (...) { - *ierr = static_cast( - adios2::helper::ExceptionToError("adios2_set_memory_selection")); + *ierr = static_cast(adios2::helper::ExceptionToError("adios2_set_memory_selection")); } } void FC_GLOBAL(adios2_set_step_selection_f2c, - ADIOS2_SET_STEP_SELECTION_F2C)(adios2_variable **variable, - const int64_t *step_start, - const int64_t *step_count, - int *ierr) + ADIOS2_SET_STEP_SELECTION_F2C)(adios2_variable **variable, const int64_t *step_start, + const int64_t *step_count, int *ierr) { try { if (step_start == nullptr || step_count == nullptr) { - throw std::invalid_argument( - "ERROR: either step_start or step_count " - "are null pointers, in call to " - "adios2_set_step_selection\n"); + throw std::invalid_argument("ERROR: either step_start or step_count " + "are null pointers, in call to " + "adios2_set_step_selection\n"); } if (step_start[0] < 0) @@ -276,21 +253,18 @@ void FC_GLOBAL(adios2_set_step_selection_f2c, } catch (...) { - *ierr = static_cast( - adios2::helper::ExceptionToError("adios2_set_selection")); + *ierr = static_cast(adios2::helper::ExceptionToError("adios2_set_selection")); } } void FC_GLOBAL(adios2_add_operation_f2c, - ADIOS2_ADD_OPERATION_F2C)(int *operation_id, - adios2_variable **variable, - adios2_operator **op, const char *key, - const char *value, int *ierr) + ADIOS2_ADD_OPERATION_F2C)(int *operation_id, adios2_variable **variable, + adios2_operator **op, const char *key, const char *value, + int *ierr) { *operation_id = -1; size_t operation_idC; - *ierr = static_cast( - adios2_add_operation(&operation_idC, *variable, *op, key, value)); + *ierr = static_cast(adios2_add_operation(&operation_idC, *variable, *op, key, value)); if (*ierr == static_cast(adios2_error_none)) { *operation_id = static_cast(operation_idC); @@ -299,8 +273,7 @@ void FC_GLOBAL(adios2_add_operation_f2c, void FC_GLOBAL(adios2_set_operation_parameter_f2c, ADIOS2_SET_OPERATION_PARAMETER_F2C)(adios2_variable **variable, - const int *operation_id, - const char *key, + const int *operation_id, const char *key, const char *value, int *ierr) { try @@ -317,30 +290,25 @@ void FC_GLOBAL(adios2_set_operation_parameter_f2c, } catch (...) { - *ierr = static_cast( - adios2::helper::ExceptionToError("adios2_set_operation_parameter")); + *ierr = + static_cast(adios2::helper::ExceptionToError("adios2_set_operation_parameter")); } } void FC_GLOBAL(adios2_remove_operations_f2c, - ADIOS2_REMOVE_OPERATIONS_F2C)(adios2_variable **variable, - int *ierr) + ADIOS2_REMOVE_OPERATIONS_F2C)(adios2_variable **variable, int *ierr) { *ierr = static_cast(adios2_remove_operations(*variable)); } void FC_GLOBAL(adios2_variable_min_f2c, - ADIOS2_VARIABLE_MIN_F2C)(void *min, - const adios2_variable **variable, - int *ierr) + ADIOS2_VARIABLE_MIN_F2C)(void *min, const adios2_variable **variable, int *ierr) { *ierr = static_cast(adios2_variable_min(min, *variable)); } void FC_GLOBAL(adios2_variable_max_f2c, - ADIOS2_VARIABLE_MAX_F2C)(void *max, - const adios2_variable **variable, - int *ierr) + ADIOS2_VARIABLE_MAX_F2C)(void *max, const adios2_variable **variable, int *ierr) { *ierr = static_cast(adios2_variable_max(max, *variable)); } diff --git a/bindings/Matlab/adiosclosec.c b/bindings/Matlab/adiosclosec.c index 73b1af5941..b5f089b66d 100644 --- a/bindings/Matlab/adiosclosec.c +++ b/bindings/Matlab/adiosclosec.c @@ -84,16 +84,14 @@ void errorCheck(int nlhs, int nrhs, const mxArray *prhs[]) if (nrhs != 3) { - mexErrMsgIdAndTxt("MATLAB:adiosclosec:rhs", - "This function needs exactly 3 arguments: " - "FileHandler, ADIOSHandler, Verbose"); + mexErrMsgIdAndTxt("MATLAB:adiosclosec:rhs", "This function needs exactly 3 arguments: " + "FileHandler, ADIOSHandler, Verbose"); } if (!mxIsUint64(prhs[0])) { - mexErrMsgIdAndTxt( - "MATLAB:adiosclosec:rhs", - "First arg must be an uint64 handler to an ADIOS file ."); + mexErrMsgIdAndTxt("MATLAB:adiosclosec:rhs", + "First arg must be an uint64 handler to an ADIOS file ."); } if (!mxIsUint64(prhs[1])) @@ -104,8 +102,7 @@ void errorCheck(int nlhs, int nrhs, const mxArray *prhs[]) if (!mxIsNumeric(prhs[2])) { - mexErrMsgIdAndTxt("MATLAB:adiosclosec:rhs", - "Third arg must be a number."); + mexErrMsgIdAndTxt("MATLAB:adiosclosec:rhs", "Third arg must be a number."); } if (nlhs > 0) diff --git a/bindings/Matlab/adiosopenc.c b/bindings/Matlab/adiosopenc.c index 1147ee32e9..95dc6d41b3 100644 --- a/bindings/Matlab/adiosopenc.c +++ b/bindings/Matlab/adiosopenc.c @@ -50,10 +50,9 @@ static int verbose = 0; mxClassID adiostypeToMatlabClass(int adiostype, mxComplexity *complexity); size_t adiostypeToMemSize(adios2_type adiostype); -mxArray *valueToMatlabValue(const void *data, mxClassID mxtype, +mxArray *valueToMatlabValue(const void *data, mxClassID mxtype, mxComplexity complexFlag); +mxArray *arrayToMatlabArray(const void *data, const size_t nelems, mxClassID mxtype, mxComplexity complexFlag); -mxArray *arrayToMatlabArray(const void *data, const size_t nelems, - mxClassID mxtype, mxComplexity complexFlag); void errorCheck(int nlhs, int nrhs, const mxArray *prhs[]); char *getString(const mxArray *mxstr); static size_t *swap_order(size_t n, const size_t *array); @@ -71,8 +70,8 @@ void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) size_t nvars, nattrs; /* Number of variables and attributes */ adios2_variable **adios_vars; /* List of variable objects */ adios2_attribute **adios_attrs; /* List of attribute objects */ - int mpi_comm_dummy; /* ADIOS read API needs an MPI communicator */ - void *data; /* Attributes return their values */ + int mpi_comm_dummy; /* ADIOS read API needs an MPI communicator */ + void *data; /* Attributes return their values */ size_t vi, ai, i; /* loop variables for vars and attrs */ mxArray *arr; /* temp array for constructions */ @@ -81,32 +80,27 @@ void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) mxComplexity complexFlag; /* Output structure definition */ - const char *top_field_names[] = { - "Name", "Handlers", "Variables", - "Attributes"}; /* top level struct fields */ + const char *top_field_names[] = {"Name", "Handlers", "Variables", + "Attributes"}; /* top level struct fields */ mwSize ntopfields = 4; - mwSize top_struct_dims[] = { - 1, 1}; /* dimensions for top level struct array: 1-by-1 */ + mwSize top_struct_dims[] = {1, 1}; /* dimensions for top level struct array: 1-by-1 */ int top_field_Name; int top_field_Handlers; int top_field_Variables; int top_field_Attributes; /* Handlers structure definition */ - const char *handler_field_names[] = { - "FileHandler", "GroupHandler", - "ADIOSHandler"}; /* handler level struct fields */ + const char *handler_field_names[] = {"FileHandler", "GroupHandler", + "ADIOSHandler"}; /* handler level struct fields */ mwSize nhandlerfields = 3; - mwSize handler_struct_dims[] = { - 1, 1}; /* dimensions for handler level struct array: 1-by-1 */ + mwSize handler_struct_dims[] = {1, 1}; /* dimensions for handler level struct array: 1-by-1 */ int handler_field_FileHandler; int handler_field_GroupHandler; int handler_field_ADIOSHandler; - const char - *var_field_names[] = {"Name", "Type", "Dims", - "StepsStart", "StepsCount", "GlobalMin", - "GlobalMax"}; /* variable level struct fields */ + const char *var_field_names[] = { + "Name", "Type", "Dims", "StepsStart", + "StepsCount", "GlobalMin", "GlobalMax"}; /* variable level struct fields */ mwSize nvarfields = 7; mwSize var_struct_dims[2]; /* dimensions for variable level struct array: 1-by-sth */ @@ -118,8 +112,7 @@ void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) int var_field_GlobalMin; int var_field_GlobalMax; - const char *attr_field_names[] = { - "Name", "Type", "Value"}; /* attribute level struct fields */ + const char *attr_field_names[] = {"Name", "Type", "Value"}; /* attribute level struct fields */ mwSize nattrfields = 3; mwSize attr_struct_dims[2]; /* dimensions for attribute level struct array: 1-by-sth */ @@ -152,22 +145,19 @@ void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) fp = adios2_open(group, fname, adios2_mode_read); if (fp == NULL) { - mexErrMsgIdAndTxt("MATLAB:adiosopenc:open", - "Opening the file failed\n"); + mexErrMsgIdAndTxt("MATLAB:adiosopenc:open", "Opening the file failed\n"); } adios2_inquire_all_variables(&adios_vars, &nvars, group); adios2_inquire_all_attributes(&adios_attrs, &nattrs, group); if (verbose) - mexPrintf("Opened file fp=%lld nvars=%zu nattrs=%zu\n", (int64_t)fp, - nvars, nattrs); + mexPrintf("Opened file fp=%lld nvars=%zu nattrs=%zu\n", (int64_t)fp, nvars, nattrs); /******************************/ /* Create top level structure */ if (verbose) mexPrintf("Create top struct array, 1-by-1\n"); - plhs[0] = - mxCreateStructArray(2, top_struct_dims, ntopfields, top_field_names); + plhs[0] = mxCreateStructArray(2, top_struct_dims, ntopfields, top_field_names); top_field_Name = mxGetFieldNumber(plhs[0], "Name"); top_field_Handlers = mxGetFieldNumber(plhs[0], "Handlers"); top_field_Variables = mxGetFieldNumber(plhs[0], "Variables"); @@ -177,8 +167,7 @@ void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) /* Create top.Handlers structure array */ if (verbose) mexPrintf("Create top.Handlers struct array, 1-by-1\n"); - handlers = mxCreateStructArray(2, handler_struct_dims, nhandlerfields, - handler_field_names); + handlers = mxCreateStructArray(2, handler_struct_dims, nhandlerfields, handler_field_names); mxSetFieldByNumber(plhs[0], 0, top_field_Handlers, handlers); /* Create top.Variables structure array */ @@ -194,8 +183,7 @@ void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) mexPrintf("Create top.Attributes struct array, 1-by-%zu\n", nattrs); attr_struct_dims[0] = 1; attr_struct_dims[1] = nattrs; - attrs = - mxCreateStructArray(2, attr_struct_dims, nattrfields, attr_field_names); + attrs = mxCreateStructArray(2, attr_struct_dims, nattrfields, attr_field_names); mxSetFieldByNumber(plhs[0], 0, top_field_Attributes, attrs); /****************************/ @@ -246,8 +234,7 @@ void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) adios2_variable_type(&adiostype, avar); mxtype = adiostypeToMatlabClass(adiostype, &complexFlag); arr = mxCreateNumericMatrix(1, 1, mxtype, complexFlag); - mxSetFieldByNumber(vars, vi, var_field_Type, - mxCreateString(mxGetClassName(arr))); + mxSetFieldByNumber(vars, vi, var_field_Type, mxCreateString(mxGetClassName(arr))); mxDestroyArray(arr); /* field DIMS */ size_t ndim; @@ -260,8 +247,7 @@ void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) if (verbose > 1) { - mexPrintf(" %s: ndims=%d, adios type=%d, dimensions [", - varname, ndim, adiostype); + mexPrintf(" %s: ndims=%d, adios type=%d, dimensions [", varname, ndim, adiostype); for (i = 0; i < ndim; i++) mexPrintf("%lld ", mxdims[i]); mexPrintf("]\n"); @@ -338,8 +324,7 @@ void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) adios2_attribute_name(attrname, &namelen, aa); attrname[namelen] = '\0'; - mxSetFieldByNumber(attrs, ai, attr_field_Name, - mxCreateString(attrname)); + mxSetFieldByNumber(attrs, ai, attr_field_Name, mxCreateString(attrname)); /* field TYPE */ size_t typelen; adios2_type adiostype; @@ -351,8 +336,7 @@ void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) mxtype = adiostypeToMatlabClass(adiostype, &complexFlag); arr = mxCreateNumericMatrix(1, 1, mxtype, complexFlag); - mxSetFieldByNumber(attrs, ai, attr_field_Type, - mxCreateString(mxGetClassName(arr))); + mxSetFieldByNumber(attrs, ai, attr_field_Type, mxCreateString(mxGetClassName(arr))); mxDestroyArray(arr); /* field VALUE */ size_t aelems; @@ -404,8 +388,7 @@ void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) mxSetFieldByNumber(attrs, ai, attr_field_Value, arr); } if (verbose > 1) - mexPrintf(" %s: adios type=%s size=%zu\n", attrname, - mxGetClassName(arr), aelems); + mexPrintf(" %s: adios type=%s size=%zu\n", attrname, mxGetClassName(arr), aelems); mxFree(data); } @@ -416,8 +399,7 @@ void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) mexPrintf("return from adiosopenc\n"); } -mxArray *valueToMatlabValue(const void *data, mxClassID mxtype, - mxComplexity complexFlag) +mxArray *valueToMatlabValue(const void *data, mxClassID mxtype, mxComplexity complexFlag) { /* copies values in all cases, so one can free(data) later */ mxArray *arr; @@ -451,8 +433,8 @@ mxArray *valueToMatlabValue(const void *data, mxClassID mxtype, return arr; } -mxArray *arrayToMatlabArray(const void *data, const size_t nelems, - mxClassID mxtype, mxComplexity complexFlag) +mxArray *arrayToMatlabArray(const void *data, const size_t nelems, mxClassID mxtype, + mxComplexity complexFlag) { /* copies values in all cases, so one can free(data) later */ mxArray *arr; @@ -498,27 +480,23 @@ void errorCheck(int nlhs, int nrhs, const mxArray *prhs[]) if (nrhs != 2) { - mexErrMsgIdAndTxt( - "MATLAB:adiosopenc:rhs", - "This function needs exactly 2 arguments: File, Verbose"); + mexErrMsgIdAndTxt("MATLAB:adiosopenc:rhs", + "This function needs exactly 2 arguments: File, Verbose"); } if (!mxIsChar(prhs[0])) { - mexErrMsgIdAndTxt("MATLAB:adiosopenc:rhs", - "First arg must be a string."); + mexErrMsgIdAndTxt("MATLAB:adiosopenc:rhs", "First arg must be a string."); } if (!mxIsNumeric(prhs[1])) { - mexErrMsgIdAndTxt("MATLAB:adiosopenc:rhs", - "Second arg must be a number."); + mexErrMsgIdAndTxt("MATLAB:adiosopenc:rhs", "Second arg must be a number."); } if (nlhs > 1) { - mexErrMsgIdAndTxt("MATLAB:adiosopenc:lhs", - "Too many output arguments."); + mexErrMsgIdAndTxt("MATLAB:adiosopenc:lhs", "Too many output arguments."); } } @@ -537,8 +515,7 @@ char *getString(const mxArray *mxstr) } /** return the appropriate class for an adios type (and complexity too) */ -mxClassID adiostypeToMatlabClass(adios2_type adiostype, - mxComplexity *complexity) +mxClassID adiostypeToMatlabClass(adios2_type adiostype, mxComplexity *complexity) { *complexity = mxREAL; switch (adiostype) @@ -581,8 +558,7 @@ mxClassID adiostypeToMatlabClass(adios2_type adiostype, default: mexErrMsgIdAndTxt("MATLAB:adiosopenc.c:dimensionTooLarge", - "Adios type id=%d not supported in matlab.\n", - adiostype); + "Adios type id=%d not supported in matlab.\n", adiostype); break; } return 0; /* just to avoid warnings. never executed */ @@ -625,8 +601,7 @@ size_t adiostypeToMemSize(adios2_type adiostype) default: mexErrMsgIdAndTxt("MATLAB:adiosopenc.c:dimensionTooLarge", - "Adios type id=%d not supported in matlab.\n", - adiostype); + "Adios type id=%d not supported in matlab.\n", adiostype); break; } return 0; /* just to avoid warnings. never executed */ diff --git a/bindings/Matlab/adiosreadc.c b/bindings/Matlab/adiosreadc.c index 224667d5be..bfa40645c7 100644 --- a/bindings/Matlab/adiosreadc.c +++ b/bindings/Matlab/adiosreadc.c @@ -32,9 +32,8 @@ static int verbose = 0; -mxArray *readdata(adios2_engine *fp, adios2_io *group, const char *path, - mwSize in_noffsets, const int64_t *in_offsets, - const int64_t *in_counts, const int64_t in_stepstart, +mxArray *readdata(adios2_engine *fp, adios2_io *group, const char *path, mwSize in_noffsets, + const int64_t *in_offsets, const int64_t *in_counts, const int64_t in_stepstart, const int64_t in_stepcount); void errorCheck(int nlhs, int nrhs, const mxArray *prhs[]); void checkDimSize(const int ndims, const size_t *dims); @@ -42,11 +41,10 @@ char *getString(const mxArray *mxstr); mxClassID adiostypeToMatlabClass(int adiostype, mxComplexity *complexity); mxArray *createMatlabArray(int adiostype, size_t ndim, size_t *dims); void recalc_offsets(const size_t ndim, const size_t *dims, mwSize in_noffsets, - const int64_t *in_offsets, const int64_t *in_counts, - size_t *offsets, size_t *counts); -void recalc_steps(const size_t varStepStart, const size_t varStepCount, - const int64_t in_stepstart, const int64_t in_stepcount, - size_t *start, size_t *count); + const int64_t *in_offsets, const int64_t *in_counts, size_t *offsets, + size_t *counts); +void recalc_steps(const size_t varStepStart, const size_t varStepCount, const int64_t in_stepstart, + const int64_t in_stepcount, size_t *start, size_t *count); static void swap_order(size_t n, size_t *array); void printArrayInt64(size_t nelems, void *array); @@ -108,8 +106,7 @@ void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) /*********************************************************************/ /* 5. read in variable */ - out = readdata(fp, group, path, in_noffsets, in_offsets, in_counts, - in_stepstart, in_stepcount); + out = readdata(fp, group, path, in_noffsets, in_offsets, in_counts, in_stepstart, in_stepcount); if (nlhs >= 1) { plhs[0] = out; @@ -118,9 +115,8 @@ void mexFunction(int nlhs, mxArray *plhs[], int nrhs, const mxArray *prhs[]) mxFree(path); } -mxArray *readdata(adios2_engine *fp, adios2_io *group, const char *path, - mwSize in_noffsets, const int64_t *in_offsets, - const int64_t *in_counts, const int64_t in_stepstart, +mxArray *readdata(adios2_engine *fp, adios2_io *group, const char *path, mwSize in_noffsets, + const int64_t *in_offsets, const int64_t *in_counts, const int64_t in_stepstart, const int64_t in_stepcount) { /* FIXME: does not work for COMPLEX data because @@ -186,16 +182,14 @@ mxArray *readdata(adios2_engine *fp, adios2_io *group, const char *path, size_t qstepstart = varStepStart; // default value in case there are no // steps for the variable size_t qstepcount = varStepCount; - recalc_offsets(varNdim, mxdims, in_noffsets, in_offsets, in_counts, - qoffsets, qcounts); - recalc_steps(varStepStart, varStepCount, in_stepstart, in_stepcount, - &qstepstart, &qstepcount); + recalc_offsets(varNdim, mxdims, in_noffsets, in_offsets, in_counts, qoffsets, qcounts); + recalc_steps(varStepStart, varStepCount, in_stepstart, in_stepcount, &qstepstart, &qstepcount); if (mxndim > varNdim) { if (verbose) - mexPrintf("Add steps as extra dimension, start=%zu count=%zu ", - qstepstart, qstepcount); + mexPrintf("Add steps as extra dimension, start=%zu count=%zu ", qstepstart, + qstepcount); qoffsets[varNdim] = qstepstart; qcounts[varNdim] = qstepcount; // steps become slowest dimension } @@ -235,8 +229,8 @@ mxArray *readdata(adios2_engine *fp, adios2_io *group, const char *path, mexPrintf(" count = "); printArrayInt64(varNdim, qcounts); mexPrintf("\n"); - mexPrintf("Set step-selection for variable: start = %zu count = %zu\n", - qstepstart, qstepcount); + mexPrintf("Set step-selection for variable: start = %zu count = %zu\n", qstepstart, + qstepcount); } if (varNdim > 0) @@ -271,34 +265,29 @@ void errorCheck(int nlhs, int nrhs, const mxArray *prhs[]) if (nrhs != 8) { - mexErrMsgIdAndTxt("MATLAB:adiosreadc:rhs", - "This function needs exactly 6 arguments: File, " - "Group, Varpath, Offsets, Counts, StepStart, " - "StepCount, Verbose"); + mexErrMsgIdAndTxt("MATLAB:adiosreadc:rhs", "This function needs exactly 6 arguments: File, " + "Group, Varpath, Offsets, Counts, StepStart, " + "StepCount, Verbose"); } if (!mxIsUint64(prhs[0])) { - mexErrMsgIdAndTxt("MATLAB:adiosreadc:rhs", - "First arg must be an uint64 handler."); + mexErrMsgIdAndTxt("MATLAB:adiosreadc:rhs", "First arg must be an uint64 handler."); } if (!mxIsUint64(prhs[1])) { - mexErrMsgIdAndTxt("MATLAB:adiosreadc:rhs", - "Second arg must be an uint64 handler."); + mexErrMsgIdAndTxt("MATLAB:adiosreadc:rhs", "Second arg must be an uint64 handler."); } if (!mxIsChar(prhs[2])) { - mexErrMsgIdAndTxt("MATLAB:adiosreadc:rhs", - "Third arg must be a string."); + mexErrMsgIdAndTxt("MATLAB:adiosreadc:rhs", "Third arg must be a string."); } if (nlhs > 1) { - mexErrMsgIdAndTxt("MATLAB:adiosreadc:lhs", - "Too many output arguments."); + mexErrMsgIdAndTxt("MATLAB:adiosreadc:lhs", "Too many output arguments."); } } @@ -309,12 +298,11 @@ void checkDimSize(const int ndims, const size_t *dims) { if (dims[i] > MWSIZE_MAX) { - mexErrMsgIdAndTxt( - "MATLAB:adiosreadc:dimensionTooLarge", - "The selected dimension size, %zu, is larger than the " - "maximum supported value of mwSize, %u, so we cannot create " - "the result array\n", - dims[i], MWSIZE_MAX); + mexErrMsgIdAndTxt("MATLAB:adiosreadc:dimensionTooLarge", + "The selected dimension size, %zu, is larger than the " + "maximum supported value of mwSize, %u, so we cannot create " + "the result array\n", + dims[i], MWSIZE_MAX); } } } @@ -334,8 +322,7 @@ char *getString(const mxArray *mxstr) } /** return the appropriate class for an adios type (and complexity too) */ -mxClassID adiostypeToMatlabClass(adios2_type adiostype, - mxComplexity *complexity) +mxClassID adiostypeToMatlabClass(adios2_type adiostype, mxComplexity *complexity) { *complexity = mxREAL; switch (adiostype) @@ -378,8 +365,7 @@ mxClassID adiostypeToMatlabClass(adios2_type adiostype, default: mexErrMsgIdAndTxt("MATLAB:adiosopenc.c:dimensionTooLarge", - "Adios type id=%d not supported in matlab.\n", - adiostype); + "Adios type id=%d not supported in matlab.\n", adiostype); break; } return 0; /* just to avoid warnings. never executed */ @@ -429,8 +415,8 @@ mxArray *createMatlabArray(int adiostype, size_t ndim, size_t *dims) !!! Provide the output arrays in the caller !!! */ void recalc_offsets(const size_t ndim, const size_t *dims, mwSize in_noffsets, - const int64_t *in_offsets, const int64_t *in_counts, - size_t *offsets, size_t *counts) + const int64_t *in_offsets, const int64_t *in_counts, size_t *offsets, + size_t *counts) { int i; for (i = 0; i < ndim; i++) @@ -442,8 +428,7 @@ void recalc_offsets(const size_t ndim, const size_t *dims, mwSize in_noffsets, else offsets[i] = in_offsets[i] - 1; /* C index start from 0 */ - if (in_counts[i] < - 0) /* negative count means last-|count|+1-start */ + if (in_counts[i] < 0) /* negative count means last-|count|+1-start */ counts[i] = dims[i] + in_counts[i] - offsets[i] + 1; else counts[i] = in_counts[i]; @@ -452,18 +437,15 @@ void recalc_offsets(const size_t ndim, const size_t *dims, mwSize in_noffsets, { /* extend offset/count array to match variable's dimensions */ if (verbose) - mexPrintf( - "Extend offset/counts for dim %d: offset=%d count=%d\n", i, - 0, dims[i]); + mexPrintf("Extend offset/counts for dim %d: offset=%d count=%d\n", i, 0, dims[i]); offsets[i] = 0; counts[i] = dims[i]; } } } -void recalc_steps(const size_t varStepStart, const size_t varStepCount, - const int64_t in_stepstart, const int64_t in_stepcount, - size_t *start, size_t *count) +void recalc_steps(const size_t varStepStart, const size_t varStepCount, const int64_t in_stepstart, + const int64_t in_stepcount, size_t *start, size_t *count) { /* handle steps for variables with multiple steps */ if (in_stepstart < 0) /* negative offset means last step -|start| */ diff --git a/bindings/Python/py11ADIOS.cpp b/bindings/Python/py11ADIOS.cpp index bdb9113b4d..837e699cfb 100644 --- a/bindings/Python/py11ADIOS.cpp +++ b/bindings/Python/py11ADIOS.cpp @@ -39,8 +39,7 @@ IO ADIOS::AtIO(const std::string name) Operator ADIOS::DefineOperator(const std::string name, const std::string type, const Params ¶meters) { - CheckPointer("for operator name " + name + - ", in call to ADIOS::DefineOperator"); + CheckPointer("for operator name " + name + ", in call to ADIOS::DefineOperator"); auto op = &m_ADIOS->DefineOperator(name, type, parameters); return Operator(op->first, &op->second); } diff --git a/bindings/Python/py11ADIOSMPI.cpp b/bindings/Python/py11ADIOSMPI.cpp index 1d89f8492b..bfd36bc1aa 100644 --- a/bindings/Python/py11ADIOSMPI.cpp +++ b/bindings/Python/py11ADIOSMPI.cpp @@ -15,8 +15,7 @@ namespace py11 { ADIOS::ADIOS(const std::string &configFile, MPI4PY_Comm mpiComm) -: m_ADIOS(std::make_shared( - configFile, helper::CommDupMPI(mpiComm), "Python")) +: m_ADIOS(std::make_shared(configFile, helper::CommDupMPI(mpiComm), "Python")) { } diff --git a/bindings/Python/py11Attribute.cpp b/bindings/Python/py11Attribute.cpp index b8afa9ae01..6eb1c0e44b 100644 --- a/bindings/Python/py11Attribute.cpp +++ b/bindings/Python/py11Attribute.cpp @@ -22,10 +22,7 @@ namespace py11 Attribute::Attribute(core::AttributeBase *attribute) : m_Attribute(attribute) {} -Attribute::operator bool() const noexcept -{ - return (m_Attribute == nullptr) ? false : true; -} +Attribute::operator bool() const noexcept { return (m_Attribute == nullptr) ? false : true; } std::string Attribute::Name() const { @@ -63,9 +60,8 @@ std::vector Attribute::DataString() } else { - throw std::invalid_argument( - "ERROR: data type for attribute " + m_Attribute->m_Name + - " is not string, in call to Attribute::DataStrings\n"); + throw std::invalid_argument("ERROR: data type for attribute " + m_Attribute->m_Name + + " is not string, in call to Attribute::DataStrings\n"); } return data; } @@ -79,26 +75,23 @@ pybind11::array Attribute::Data() { // not supported } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - pybind11::array pyArray(pybind11::dtype::of(), \ - m_Attribute->m_Elements); \ - if (m_Attribute->m_IsSingleValue) \ - { \ - const T value = dynamic_cast *>(m_Attribute) \ - ->m_DataSingleValue; \ - std::memcpy(const_cast(pyArray.data()), &value, \ - sizeof(T)); \ - } \ - else \ - { \ - const std::vector &values = \ - dynamic_cast *>(m_Attribute)->m_DataArray; \ - std::memcpy(const_cast(pyArray.data()), values.data(), \ - sizeof(T) * m_Attribute->m_Elements); \ - } \ - return pyArray; \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + pybind11::array pyArray(pybind11::dtype::of(), m_Attribute->m_Elements); \ + if (m_Attribute->m_IsSingleValue) \ + { \ + const T value = dynamic_cast *>(m_Attribute)->m_DataSingleValue; \ + std::memcpy(const_cast(pyArray.data()), &value, sizeof(T)); \ + } \ + else \ + { \ + const std::vector &values = \ + dynamic_cast *>(m_Attribute)->m_DataArray; \ + std::memcpy(const_cast(pyArray.data()), values.data(), \ + sizeof(T) * m_Attribute->m_Elements); \ + } \ + return pyArray; \ } ADIOS2_FOREACH_NUMPY_ATTRIBUTE_TYPE_1ARG(declare_type) #undef declare_type diff --git a/bindings/Python/py11Engine.cpp b/bindings/Python/py11Engine.cpp index a1227e93c5..3bdce6316f 100644 --- a/bindings/Python/py11Engine.cpp +++ b/bindings/Python/py11Engine.cpp @@ -47,26 +47,23 @@ StepStatus Engine::BeginStep() return m_Engine->BeginStep(); } -void Engine::Put(Variable variable, const pybind11::array &array, - const Mode launch) +void Engine::Put(Variable variable, const pybind11::array &array, const Mode launch) { helper::CheckForNullptr(m_Engine, "in call to Engine::Put numpy array"); helper::CheckForNullptr(variable.m_VariableBase, "for variable, in call to Engine::Put numpy array"); - const adios2::DataType type = - helper::GetDataTypeFromString(variable.Type()); + const adios2::DataType type = helper::GetDataTypeFromString(variable.Type()); if (type == adios2::DataType::Struct) { // not supported } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - m_Engine->Put( \ - *dynamic_cast *>(variable.m_VariableBase), \ - reinterpret_cast(array.data()), launch); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + m_Engine->Put(*dynamic_cast *>(variable.m_VariableBase), \ + reinterpret_cast(array.data()), launch); \ } ADIOS2_FOREACH_NUMPY_TYPE_1ARG(declare_type) #undef declare_type @@ -81,22 +78,17 @@ void Engine::Put(Variable variable, const pybind11::array &array, void Engine::Put(Variable variable, const std::string &string) { - helper::CheckForNullptr(m_Engine, - "for engine, in call to Engine::Put string"); - helper::CheckForNullptr(variable.m_VariableBase, - "for variable, in call to Engine::Put string"); + helper::CheckForNullptr(m_Engine, "for engine, in call to Engine::Put string"); + helper::CheckForNullptr(variable.m_VariableBase, "for variable, in call to Engine::Put string"); - if (helper::GetDataTypeFromString(variable.Type()) != - helper::GetDataType()) + if (helper::GetDataTypeFromString(variable.Type()) != helper::GetDataType()) { - throw std::invalid_argument( - "ERROR: variable " + variable.Name() + - " is not of string type, in call to Engine::Put"); + throw std::invalid_argument("ERROR: variable " + variable.Name() + + " is not of string type, in call to Engine::Put"); } - m_Engine->Put( - *dynamic_cast *>(variable.m_VariableBase), - string, adios2::Mode::Sync); + m_Engine->Put(*dynamic_cast *>(variable.m_VariableBase), string, + adios2::Mode::Sync); } void Engine::PerformPuts() @@ -113,67 +105,57 @@ void Engine::PerformDataWrite() void Engine::Get(Variable variable, pybind11::array &array, const Mode launch) { - helper::CheckForNullptr(m_Engine, - "for engine, in call to Engine::Get a numpy array"); - helper::CheckForNullptr( - variable.m_VariableBase, - "for variable, in call to Engine::Get a numpy array"); + helper::CheckForNullptr(m_Engine, "for engine, in call to Engine::Get a numpy array"); + helper::CheckForNullptr(variable.m_VariableBase, + "for variable, in call to Engine::Get a numpy array"); - const adios2::DataType type = - helper::GetDataTypeFromString(variable.Type()); + const adios2::DataType type = helper::GetDataTypeFromString(variable.Type()); if (type == adios2::DataType::Struct) { // not supported } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - if (!array.dtype().is(pybind11::dtype::of())) \ - { \ - throw std::invalid_argument( \ - "In ADIOS2 Get - Type mismatch between Python buffer and " \ - "incoming data."); \ - } \ - m_Engine->Get( \ - *dynamic_cast *>(variable.m_VariableBase), \ - reinterpret_cast(const_cast(array.data())), launch); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + if (!array.dtype().is(pybind11::dtype::of())) \ + { \ + throw std::invalid_argument("In ADIOS2 Get - Type mismatch between Python buffer and " \ + "incoming data."); \ + } \ + m_Engine->Get(*dynamic_cast *>(variable.m_VariableBase), \ + reinterpret_cast(const_cast(array.data())), launch); \ } ADIOS2_FOREACH_NUMPY_TYPE_1ARG(declare_type) #undef declare_type else { - throw std::invalid_argument( - "ERROR: in variable " + variable.Name() + " of type " + - variable.Type() + - ", numpy array type is 1) not supported, 2) a type mismatch or" - "3) is not memory contiguous " - ", in call to Get\n"); + throw std::invalid_argument("ERROR: in variable " + variable.Name() + " of type " + + variable.Type() + + ", numpy array type is 1) not supported, 2) a type mismatch or" + "3) is not memory contiguous " + ", in call to Get\n"); } } std::string Engine::Get(Variable variable, const Mode launch) { std::string string; - helper::CheckForNullptr(m_Engine, - "for engine, in call to Engine::Get a numpy array"); + helper::CheckForNullptr(m_Engine, "for engine, in call to Engine::Get a numpy array"); helper::CheckForNullptr(variable.m_VariableBase, "for variable, in call to Engine::Get a string"); - const adios2::DataType type = - helper::GetDataTypeFromString(variable.Type()); + const adios2::DataType type = helper::GetDataTypeFromString(variable.Type()); if (type == helper::GetDataType()) { - m_Engine->Get(*dynamic_cast *>( - variable.m_VariableBase), - string, launch); + m_Engine->Get(*dynamic_cast *>(variable.m_VariableBase), string, + launch); } else { - throw std::invalid_argument("ERROR: variable " + variable.Name() + - " of type " + variable.Type() + - " is not string, in call to Engine::Get"); + throw std::invalid_argument("ERROR: variable " + variable.Name() + " of type " + + variable.Type() + " is not string, in call to Engine::Get"); } return string; } @@ -209,8 +191,7 @@ void Engine::Close(const int transportIndex) size_t Engine::CurrentStep() const { - helper::CheckForNullptr(m_Engine, - "for engine, in call to Engine::CurrentStep"); + helper::CheckForNullptr(m_Engine, "for engine, in call to Engine::CurrentStep"); return m_Engine->CurrentStep(); } @@ -234,20 +215,18 @@ size_t Engine::Steps() const void Engine::LockWriterDefinitions() const { - helper::CheckForNullptr(m_Engine, - "in call to Engine::LockWriterDefinitions"); + helper::CheckForNullptr(m_Engine, "in call to Engine::LockWriterDefinitions"); m_Engine->LockWriterDefinitions(); } void Engine::LockReaderSelections() const { - helper::CheckForNullptr(m_Engine, - "in call to Engine::LockReaderSelections"); + helper::CheckForNullptr(m_Engine, "in call to Engine::LockReaderSelections"); m_Engine->LockReaderSelections(); } -std::vector> -Engine::BlocksInfo(std::string &var_name, const size_t step) const +std::vector> Engine::BlocksInfo(std::string &var_name, + const size_t step) const { std::vector> rv; @@ -335,8 +314,7 @@ Engine::BlocksInfo(std::string &var_name, const size_t step) const } info_map["Max"] = osMax.str(); info_map["Min"] = osMin.str(); - info_map["IsReverseDims"] = - minBlocksInfo->IsReverseDims ? "True" : "False"; + info_map["IsReverseDims"] = minBlocksInfo->IsReverseDims ? "True" : "False"; rv.push_back(info_map); } return rv; @@ -347,41 +325,41 @@ Engine::BlocksInfo(std::string &var_name, const size_t step) const if (false) { } -#define GET_BLOCKS_INFO(T) \ - else if (var_type == helper::GetDataType()) \ - { \ - auto variable = m_Engine->GetIO().InquireVariable(var_name); \ - auto infoVec = m_Engine->BlocksInfo(*variable, step); \ - for (auto &info : infoVec) \ - { \ - std::map info_map; \ - std::stringstream start_ss; \ - for (size_t i = 0; i < info.Start.size(); ++i) \ - { \ - if (i != 0) \ - start_ss << ","; \ - start_ss << info.Start[i]; \ - } \ - info_map["Start"] = start_ss.str(); \ - std::stringstream count_ss; \ - for (size_t i = 0; i < info.Count.size(); ++i) \ - { \ - if (i != 0) \ - count_ss << ","; \ - count_ss << info.Count[i]; \ - } \ - info_map["Count"] = count_ss.str(); \ - info_map["WriterID"] = std::to_string(info.WriterID); \ - info_map["BlockID"] = std::to_string(info.BlockID); \ - info_map["IsValue"] = info.IsValue ? "True" : "False"; \ - std::ostringstream osMax, osMin; \ - osMax << info.Max; \ - osMin << info.Min; \ - info_map["Max"] = osMax.str(); \ - info_map["Min"] = osMin.str(); \ - info_map["IsReverseDims"] = info.IsReverseDims ? "True" : "False"; \ - rv.push_back(info_map); \ - } \ +#define GET_BLOCKS_INFO(T) \ + else if (var_type == helper::GetDataType()) \ + { \ + auto variable = m_Engine->GetIO().InquireVariable(var_name); \ + auto infoVec = m_Engine->BlocksInfo(*variable, step); \ + for (auto &info : infoVec) \ + { \ + std::map info_map; \ + std::stringstream start_ss; \ + for (size_t i = 0; i < info.Start.size(); ++i) \ + { \ + if (i != 0) \ + start_ss << ","; \ + start_ss << info.Start[i]; \ + } \ + info_map["Start"] = start_ss.str(); \ + std::stringstream count_ss; \ + for (size_t i = 0; i < info.Count.size(); ++i) \ + { \ + if (i != 0) \ + count_ss << ","; \ + count_ss << info.Count[i]; \ + } \ + info_map["Count"] = count_ss.str(); \ + info_map["WriterID"] = std::to_string(info.WriterID); \ + info_map["BlockID"] = std::to_string(info.BlockID); \ + info_map["IsValue"] = info.IsValue ? "True" : "False"; \ + std::ostringstream osMax, osMin; \ + osMax << info.Max; \ + osMin << info.Min; \ + info_map["Max"] = osMax.str(); \ + info_map["Min"] = osMin.str(); \ + info_map["IsReverseDims"] = info.IsReverseDims ? "True" : "False"; \ + rv.push_back(info_map); \ + } \ } ADIOS2_FOREACH_PYTHON_TYPE_1ARG(GET_BLOCKS_INFO) diff --git a/bindings/Python/py11Engine.h b/bindings/Python/py11Engine.h index daee8f0ed1..ab713472f2 100644 --- a/bindings/Python/py11Engine.h +++ b/bindings/Python/py11Engine.h @@ -45,18 +45,15 @@ class Engine explicit operator bool() const noexcept; - StepStatus BeginStep(const StepMode mode, - const float timeoutSeconds = -1.f); + StepStatus BeginStep(const StepMode mode, const float timeoutSeconds = -1.f); StepStatus BeginStep(); - void Put(Variable variable, const pybind11::array &array, - const Mode launch = Mode::Deferred); + void Put(Variable variable, const pybind11::array &array, const Mode launch = Mode::Deferred); void Put(Variable variable, const std::string &string); void PerformPuts(); void PerformDataWrite(); - void Get(Variable variable, pybind11::array &array, - const Mode launch = Mode::Deferred); + void Get(Variable variable, pybind11::array &array, const Mode launch = Mode::Deferred); std::string Get(Variable variable, const Mode launch = Mode::Deferred); void PerformGets(); @@ -75,8 +72,8 @@ class Engine void LockWriterDefinitions() const; void LockReaderSelections() const; - std::vector> - BlocksInfo(std::string &string, const size_t step) const; + std::vector> BlocksInfo(std::string &string, + const size_t step) const; private: Engine(core::Engine *engine); diff --git a/bindings/Python/py11File.cpp b/bindings/Python/py11File.cpp index a3ba208a34..17b456e4d5 100644 --- a/bindings/Python/py11File.cpp +++ b/bindings/Python/py11File.cpp @@ -24,18 +24,16 @@ namespace adios2 namespace py11 { -File::File(const std::string &name, const std::string mode, - const std::string engineType) -: m_Name(name), m_Mode(mode), m_Stream(std::make_shared( - name, ToMode(mode), engineType, "Python")) +File::File(const std::string &name, const std::string mode, const std::string engineType) +: m_Name(name), m_Mode(mode), + m_Stream(std::make_shared(name, ToMode(mode), engineType, "Python")) { } -File::File(const std::string &name, const std::string mode, - const std::string &configFile, const std::string ioInConfigFile) +File::File(const std::string &name, const std::string mode, const std::string &configFile, + const std::string ioInConfigFile) : m_Name(name), m_Mode(mode), - m_Stream(std::make_shared(name, ToMode(mode), configFile, - ioInConfigFile, "Python")) + m_Stream(std::make_shared(name, ToMode(mode), configFile, ioInConfigFile, "Python")) { } @@ -67,88 +65,78 @@ std::map File::AvailableAttributes() noexcept } void File::WriteAttribute(const std::string &name, const pybind11::array &array, - const std::string &variableName, - const std::string separator, const bool endStep) + const std::string &variableName, const std::string separator, + const bool endStep) { if (false) { } -#define declare_type(T) \ - else if (pybind11::isinstance< \ - pybind11::array_t>(array)) \ - { \ - m_Stream->WriteAttribute(name, \ - reinterpret_cast(array.data()), \ - static_cast(array.size()), \ - variableName, separator, endStep); \ +#define declare_type(T) \ + else if (pybind11::isinstance>(array)) \ + { \ + m_Stream->WriteAttribute(name, reinterpret_cast(array.data()), \ + static_cast(array.size()), variableName, separator, \ + endStep); \ } ADIOS2_FOREACH_NUMPY_ATTRIBUTE_TYPE_1ARG(declare_type) #undef declare_type else { - throw std::invalid_argument( - "ERROR: adios2 file write attribute " + name + - ", either numpy type is not supported or is not " - "c_style memory contiguous, in call to write\n"); + throw std::invalid_argument("ERROR: adios2 file write attribute " + name + + ", either numpy type is not supported or is not " + "c_style memory contiguous, in call to write\n"); } } -void File::WriteAttribute(const std::string &name, - const std::string &stringValue, - const std::string &variableName, - const std::string separator, const bool endStep) +void File::WriteAttribute(const std::string &name, const std::string &stringValue, + const std::string &variableName, const std::string separator, + const bool endStep) { - m_Stream->WriteAttribute(name, stringValue, variableName, separator, - endStep); + m_Stream->WriteAttribute(name, stringValue, variableName, separator, endStep); } -void File::WriteAttribute(const std::string &name, - const std::vector &stringArray, - const std::string &variableName, - const std::string separator, const bool endStep) +void File::WriteAttribute(const std::string &name, const std::vector &stringArray, + const std::string &variableName, const std::string separator, + const bool endStep) { - m_Stream->WriteAttribute(name, stringArray.data(), stringArray.size(), - variableName, separator, endStep); + m_Stream->WriteAttribute(name, stringArray.data(), stringArray.size(), variableName, separator, + endStep); } -void File::Write(const std::string &name, const pybind11::array &array, - const Dims &shape, const Dims &start, const Dims &count, - const bool endStep) +void File::Write(const std::string &name, const pybind11::array &array, const Dims &shape, + const Dims &start, const Dims &count, const bool endStep) { if (false) { } -#define declare_type(T) \ - else if (pybind11::isinstance< \ - pybind11::array_t>(array)) \ - { \ - m_Stream->Write(name, reinterpret_cast(array.data()), \ - shape, start, count, vParams(), endStep); \ +#define declare_type(T) \ + else if (pybind11::isinstance>(array)) \ + { \ + m_Stream->Write(name, reinterpret_cast(array.data()), shape, start, count, \ + vParams(), endStep); \ } ADIOS2_FOREACH_NUMPY_TYPE_1ARG(declare_type) #undef declare_type else { - throw std::invalid_argument( - "ERROR: adios2 file write variable " + name + - ", either numpy type is not supported or is not " - "c_style memory contiguous, in call to write\n"); + throw std::invalid_argument("ERROR: adios2 file write variable " + name + + ", either numpy type is not supported or is not " + "c_style memory contiguous, in call to write\n"); } } -void File::Write(const std::string &name, const pybind11::array &array, - const Dims &shape, const Dims &start, const Dims &count, - const adios2::vParams &operations, const bool endStep) +void File::Write(const std::string &name, const pybind11::array &array, const Dims &shape, + const Dims &start, const Dims &count, const adios2::vParams &operations, + const bool endStep) { if (false) { } -#define declare_type(T) \ - else if (pybind11::isinstance< \ - pybind11::array_t>(array)) \ - { \ - m_Stream->Write(name, reinterpret_cast(array.data()), \ - shape, start, count, operations, endStep); \ +#define declare_type(T) \ + else if (pybind11::isinstance>(array)) \ + { \ + m_Stream->Write(name, reinterpret_cast(array.data()), shape, start, count, \ + operations, endStep); \ } ADIOS2_FOREACH_NUMPY_TYPE_1ARG(declare_type) #undef declare_type @@ -161,8 +149,8 @@ void File::Write(const std::string &name, const pybind11::array &array, } } -void File::Write(const std::string &name, const pybind11::array &array, - const bool isLocalValue, const bool endStep) +void File::Write(const std::string &name, const pybind11::array &array, const bool isLocalValue, + const bool endStep) { if (isLocalValue) { @@ -174,30 +162,23 @@ void File::Write(const std::string &name, const pybind11::array &array, } } -void File::Write(const std::string &name, const std::string &stringValue, - const bool isLocalValue, const bool endStep) +void File::Write(const std::string &name, const std::string &stringValue, const bool isLocalValue, + const bool endStep) { m_Stream->Write(name, stringValue, isLocalValue, endStep); } -bool File::GetStep() const -{ - return const_cast(this)->m_Stream->GetStep(); -} +bool File::GetStep() const { return const_cast(this)->m_Stream->GetStep(); } -std::vector File::ReadString(const std::string &name, - const size_t blockID) +std::vector File::ReadString(const std::string &name, const size_t blockID) { return m_Stream->Read(name, blockID); } -std::vector File::ReadString(const std::string &name, - const size_t stepStart, - const size_t stepCount, - const size_t blockID) +std::vector File::ReadString(const std::string &name, const size_t stepStart, + const size_t stepCount, const size_t blockID) { - return m_Stream->Read(name, Box(stepStart, stepCount), - blockID); + return m_Stream->Read(name, Box(stepStart, stepCount), blockID); } pybind11::array File::Read(const std::string &name, const size_t blockID) @@ -205,15 +186,14 @@ pybind11::array File::Read(const std::string &name, const size_t blockID) return Read(name, {}, {}, blockID); } -pybind11::array File::Read(const std::string &name, const Dims &start, - const Dims &count, const size_t blockID) +pybind11::array File::Read(const std::string &name, const Dims &start, const Dims &count, + const size_t blockID) { const DataType type = m_Stream->m_IO->InquireVariableType(name); if (type == helper::GetDataType()) { - const std::string value = - m_Stream->Read(name, blockID).front(); + const std::string value = m_Stream->Read(name, blockID).front(); pybind11::array_t pyArray(Dims{value.size()}); std::copy(value.begin(), value.end(), pyArray.mutable_data()); return std::move(pyArray); @@ -222,75 +202,67 @@ pybind11::array File::Read(const std::string &name, const Dims &start, return Read(name, start, count, 0, 0, blockID); } -pybind11::array File::Read(const std::string &name, const Dims &start, - const Dims &count, const size_t stepStart, - const size_t stepCount, const size_t blockID) +pybind11::array File::Read(const std::string &name, const Dims &start, const Dims &count, + const size_t stepStart, const size_t stepCount, const size_t blockID) { const DataType type = m_Stream->m_IO->InquireVariableType(name); if (type == DataType::None) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - return DoRead(name, start, count, stepStart, stepCount, blockID); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + return DoRead(name, start, count, stepStart, stepCount, blockID); \ } ADIOS2_FOREACH_NUMPY_TYPE_1ARG(declare_type) #undef declare_type else { - throw std::invalid_argument( - "ERROR: adios2 file read variable " + name + - ", type can't be mapped to a numpy type, in call to read\n"); + throw std::invalid_argument("ERROR: adios2 file read variable " + name + + ", type can't be mapped to a numpy type, in call to read\n"); } return pybind11::array(); } -pybind11::array File::ReadAttribute(const std::string &name, - const std::string &variableName, +pybind11::array File::ReadAttribute(const std::string &name, const std::string &variableName, const std::string separator) { - const DataType type = - m_Stream->m_IO->InquireAttributeType(name, variableName, separator); + const DataType type = m_Stream->m_IO->InquireAttributeType(name, variableName, separator); if (type == DataType::None) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - core::Attribute *attribute = m_Stream->m_IO->InquireAttribute( \ - name, variableName, separator); \ - if (attribute->m_IsSingleValue) \ - { \ - pybind11::array_t pyArray({}); \ - pyArray.mutable_data()[0] = attribute->m_DataSingleValue; \ - } \ - pybind11::array_t pyArray(attribute->m_Elements); \ - m_Stream->ReadAttribute(name, pyArray.mutable_data(), variableName, \ - separator); \ - return std::move(pyArray); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + core::Attribute *attribute = \ + m_Stream->m_IO->InquireAttribute(name, variableName, separator); \ + if (attribute->m_IsSingleValue) \ + { \ + pybind11::array_t pyArray({}); \ + pyArray.mutable_data()[0] = attribute->m_DataSingleValue; \ + } \ + pybind11::array_t pyArray(attribute->m_Elements); \ + m_Stream->ReadAttribute(name, pyArray.mutable_data(), variableName, separator); \ + return std::move(pyArray); \ } ADIOS2_FOREACH_NUMPY_ATTRIBUTE_TYPE_1ARG(declare_type) #undef declare_type else { - throw std::invalid_argument( - "ERROR: adios2 file read attribute " + name + - ", type can't be mapped to a numpy type, in call to read\n"); + throw std::invalid_argument("ERROR: adios2 file read attribute " + name + + ", type can't be mapped to a numpy type, in call to read\n"); } return pybind11::array(); } -std::vector -File::ReadAttributeString(const std::string &name, - const std::string &variableName, - const std::string separator) +std::vector File::ReadAttributeString(const std::string &name, + const std::string &variableName, + const std::string separator) { const core::Attribute *attribute = - m_Stream->m_IO->InquireAttribute(name, variableName, - separator); + m_Stream->m_IO->InquireAttribute(name, variableName, separator); if (attribute == nullptr) { @@ -298,8 +270,7 @@ File::ReadAttributeString(const std::string &name, } std::vector data(attribute->m_Elements); - m_Stream->ReadAttribute(name, data.data(), variableName, - separator); + m_Stream->ReadAttribute(name, data.data(), variableName, separator); return data; } @@ -337,11 +308,10 @@ adios2::Mode File::ToMode(const std::string mode) const } else { - throw std::invalid_argument( - "ERROR: adios2 mode " + mode + " for file " + m_Name + - " not supported, only \"r\", \"rra\", \"w\" and \"a\" (read, " - "readRandomAccess, write, append) " - "are valid modes, in call to open\n"); + throw std::invalid_argument("ERROR: adios2 mode " + mode + " for file " + m_Name + + " not supported, only \"r\", \"rra\", \"w\" and \"a\" (read, " + "readRandomAccess, write, append) " + "are valid modes, in call to open\n"); } return modeCpp; diff --git a/bindings/Python/py11File.h b/bindings/Python/py11File.h index 5b1b8883a9..ef83a41def 100644 --- a/bindings/Python/py11File.h +++ b/bindings/Python/py11File.h @@ -39,11 +39,10 @@ class File const std::string &configFile, const std::string ioInConfigFile); #endif - File(const std::string &name, const std::string mode, - const std::string engineType = "BPFile"); + File(const std::string &name, const std::string mode, const std::string engineType = "BPFile"); - File(const std::string &name, const std::string mode, - const std::string &configFile, const std::string ioInConfigFile); + File(const std::string &name, const std::string mode, const std::string &configFile, + const std::string ioInConfigFile); ~File() = default; @@ -51,38 +50,31 @@ class File void SetParameters(const Params ¶meters) noexcept; - size_t AddTransport(const std::string type, - const Params ¶meters = Params()); + size_t AddTransport(const std::string type, const Params ¶meters = Params()); std::map - AvailableVariables(const std::vector &keys = - std::vector()) noexcept; + AvailableVariables(const std::vector &keys = std::vector()) noexcept; std::map AvailableAttributes() noexcept; void WriteAttribute(const std::string &name, const pybind11::array &array, - const std::string &variableName = "", - const std::string separator = "/", + const std::string &variableName = "", const std::string separator = "/", const bool endStep = false); void WriteAttribute(const std::string &name, const std::string &stringValue, - const std::string &variableName = "", - const std::string separator = "/", + const std::string &variableName = "", const std::string separator = "/", const bool endStep = false); - void WriteAttribute(const std::string &name, - const std::vector &stringArray, - const std::string &variableName = "", - const std::string separator = "/", + void WriteAttribute(const std::string &name, const std::vector &stringArray, + const std::string &variableName = "", const std::string separator = "/", const bool endStep = false); - void Write(const std::string &name, const pybind11::array &array, - const Dims &shape, const Dims &start, const Dims &count, - const bool endStep = false); + void Write(const std::string &name, const pybind11::array &array, const Dims &shape, + const Dims &start, const Dims &count, const bool endStep = false); - void Write(const std::string &name, const pybind11::array &array, - const Dims &shape, const Dims &start, const Dims &count, - const adios2::vParams &operations, const bool endStep = false); + void Write(const std::string &name, const pybind11::array &array, const Dims &shape, + const Dims &start, const Dims &count, const adios2::vParams &operations, + const bool endStep = false); void Write(const std::string &name, const pybind11::array &array, const bool isLocalValue = false, const bool endStep = false); @@ -92,31 +84,25 @@ class File bool GetStep() const; - std::vector ReadString(const std::string &name, - const size_t blockID = 0); + std::vector ReadString(const std::string &name, const size_t blockID = 0); - std::vector ReadString(const std::string &name, - const size_t stepStart, - const size_t stepCount, - const size_t blockID = 0); + std::vector ReadString(const std::string &name, const size_t stepStart, + const size_t stepCount, const size_t blockID = 0); pybind11::array Read(const std::string &name, const size_t blockID = 0); - pybind11::array Read(const std::string &name, const Dims &start, - const Dims &count, const size_t blockID = 0); + pybind11::array Read(const std::string &name, const Dims &start, const Dims &count, + const size_t blockID = 0); - pybind11::array Read(const std::string &name, const Dims &start, - const Dims &count, const size_t stepStart, - const size_t stepCount, const size_t blockID = 0); + pybind11::array Read(const std::string &name, const Dims &start, const Dims &count, + const size_t stepStart, const size_t stepCount, const size_t blockID = 0); - pybind11::array ReadAttribute(const std::string &name, - const std::string &variableName = "", + pybind11::array ReadAttribute(const std::string &name, const std::string &variableName = "", const std::string separator = "/"); - std::vector - ReadAttributeString(const std::string &name, - const std::string &variableName = "", - const std::string separator = "/"); + std::vector ReadAttributeString(const std::string &name, + const std::string &variableName = "", + const std::string separator = "/"); void EndStep(); @@ -131,9 +117,8 @@ class File adios2::Mode ToMode(const std::string mode) const; template - pybind11::array DoRead(const std::string &name, const Dims &start, - const Dims &count, const size_t stepStart, - const size_t stepCount, const size_t blockID); + pybind11::array DoRead(const std::string &name, const Dims &start, const Dims &count, + const size_t stepStart, const size_t stepCount, const size_t blockID); }; } // end namespace py11 diff --git a/bindings/Python/py11File.tcc b/bindings/Python/py11File.tcc index e102c1bfdf..6cf41d4d4f 100644 --- a/bindings/Python/py11File.tcc +++ b/bindings/Python/py11File.tcc @@ -19,9 +19,8 @@ namespace py11 { template -pybind11::array File::DoRead(const std::string &name, const Dims &_start, - const Dims &_count, const size_t stepStart, - const size_t stepCount, const size_t blockID) +pybind11::array File::DoRead(const std::string &name, const Dims &_start, const Dims &_count, + const size_t stepStart, const size_t stepCount, const size_t blockID) { core::Variable &variable = *m_Stream->m_IO->InquireVariable(name); Dims &shape = variable.m_Shape; @@ -45,8 +44,7 @@ pybind11::array File::DoRead(const std::string &name, const Dims &_start, { if (blockID != 0) { - throw std::invalid_argument( - "blockId can only be specified when reading LocalArrays."); + throw std::invalid_argument("blockId can only be specified when reading LocalArrays."); } } diff --git a/bindings/Python/py11FileMPI.cpp b/bindings/Python/py11FileMPI.cpp index 66395562df..e38383203d 100644 --- a/bindings/Python/py11FileMPI.cpp +++ b/bindings/Python/py11FileMPI.cpp @@ -17,16 +17,15 @@ namespace py11 File::File(const std::string &name, const std::string mode, MPI_Comm comm, const std::string engineType) : m_Name(name), m_Mode(mode), - m_Stream(std::make_shared( - name, ToMode(mode), helper::CommDupMPI(comm), engineType, "Python")) + m_Stream(std::make_shared(name, ToMode(mode), helper::CommDupMPI(comm), engineType, + "Python")) { } File::File(const std::string &name, const std::string mode, MPI_Comm comm, const std::string &configFile, const std::string ioInConfigFile) : m_Name(name), m_Mode(mode), - m_Stream(std::make_shared(name, ToMode(mode), - helper::CommDupMPI(comm), configFile, + m_Stream(std::make_shared(name, ToMode(mode), helper::CommDupMPI(comm), configFile, ioInConfigFile, "Python")) { } diff --git a/bindings/Python/py11IO.cpp b/bindings/Python/py11IO.cpp index 72feffc6c9..2d57abe554 100644 --- a/bindings/Python/py11IO.cpp +++ b/bindings/Python/py11IO.cpp @@ -60,8 +60,8 @@ size_t IO::AddTransport(const std::string type, const Params ¶meters) return m_IO->AddTransport(type, parameters); } -void IO::SetTransportParameter(const size_t transportIndex, - const std::string key, const std::string value) +void IO::SetTransportParameter(const size_t transportIndex, const std::string key, + const std::string value) { helper::CheckForNullptr(m_IO, "in call to IO::SetTransportParameter"); m_IO->SetTransportParameter(transportIndex, key, value); @@ -69,29 +69,24 @@ void IO::SetTransportParameter(const size_t transportIndex, Variable IO::DefineVariable(const std::string &name) { - helper::CheckForNullptr(m_IO, "for variable " + name + - ", in call to IO::DefineVariable"); + helper::CheckForNullptr(m_IO, "for variable " + name + ", in call to IO::DefineVariable"); return Variable(&m_IO->DefineVariable(name)); } -Variable IO::DefineVariable(const std::string &name, - const pybind11::array &array, const Dims &shape, - const Dims &start, const Dims &count, +Variable IO::DefineVariable(const std::string &name, const pybind11::array &array, + const Dims &shape, const Dims &start, const Dims &count, const bool isConstantDims) { - helper::CheckForNullptr(m_IO, "for variable " + name + - ", in call to IO::DefineVariable"); + helper::CheckForNullptr(m_IO, "for variable " + name + ", in call to IO::DefineVariable"); core::VariableBase *variable = nullptr; if (false) { } -#define declare_type(T) \ - else if (pybind11::isinstance< \ - pybind11::array_t>(array)) \ - { \ - variable = &m_IO->DefineVariable(name, shape, start, count, \ - isConstantDims); \ +#define declare_type(T) \ + else if (pybind11::isinstance>(array)) \ + { \ + variable = &m_IO->DefineVariable(name, shape, start, count, isConstantDims); \ } ADIOS2_FOREACH_NUMPY_TYPE_1ARG(declare_type) #undef declare_type @@ -108,8 +103,7 @@ Variable IO::DefineVariable(const std::string &name, Variable IO::InquireVariable(const std::string &name) { - helper::CheckForNullptr(m_IO, "for variable " + name + - ", in call to IO::InquireVariable"); + helper::CheckForNullptr(m_IO, "for variable " + name + ", in call to IO::InquireVariable"); const DataType type(m_IO->InquireVariableType(name)); core::VariableBase *variable = nullptr; @@ -117,10 +111,10 @@ Variable IO::InquireVariable(const std::string &name) if (type == DataType::None) { } -#define declare_template_instantiation(T) \ - else if (type == helper::GetDataType()) \ - { \ - variable = m_IO->InquireVariable(name); \ +#define declare_template_instantiation(T) \ + else if (type == helper::GetDataType()) \ + { \ + variable = m_IO->InquireVariable(name); \ } ADIOS2_FOREACH_PYTHON_TYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -128,27 +122,22 @@ Variable IO::InquireVariable(const std::string &name) return Variable(variable); } -Attribute IO::DefineAttribute(const std::string &name, - const pybind11::array &array, - const std::string &variableName, - const std::string separator) +Attribute IO::DefineAttribute(const std::string &name, const pybind11::array &array, + const std::string &variableName, const std::string separator) { - helper::CheckForNullptr(m_IO, "for attribute " + name + - ", in call to IO::DefineAttribute"); + helper::CheckForNullptr(m_IO, "for attribute " + name + ", in call to IO::DefineAttribute"); core::AttributeBase *attribute = nullptr; if (false) { } -#define declare_type(T) \ - else if (pybind11::isinstance< \ - pybind11::array_t>(array)) \ - { \ - const T *data = reinterpret_cast(array.data()); \ - const size_t size = static_cast(array.size()); \ - attribute = &m_IO->DefineAttribute(name, data, size, variableName, \ - separator); \ +#define declare_type(T) \ + else if (pybind11::isinstance>(array)) \ + { \ + const T *data = reinterpret_cast(array.data()); \ + const size_t size = static_cast(array.size()); \ + attribute = &m_IO->DefineAttribute(name, data, size, variableName, separator); \ } ADIOS2_FOREACH_NUMPY_ATTRIBUTE_TYPE_1ARG(declare_type) #undef declare_type @@ -163,34 +152,27 @@ Attribute IO::DefineAttribute(const std::string &name, return Attribute(attribute); } -Attribute IO::DefineAttribute(const std::string &name, - const std::string &stringValue, - const std::string &variableName, - const std::string separator) +Attribute IO::DefineAttribute(const std::string &name, const std::string &stringValue, + const std::string &variableName, const std::string separator) { - helper::CheckForNullptr(m_IO, "for attribute " + name + - ", in call to IO::DefineAttribute"); + helper::CheckForNullptr(m_IO, "for attribute " + name + ", in call to IO::DefineAttribute"); - return Attribute(&m_IO->DefineAttribute( - name, stringValue, variableName, separator)); + return Attribute( + &m_IO->DefineAttribute(name, stringValue, variableName, separator)); } -Attribute IO::DefineAttribute(const std::string &name, - const std::vector &strings, - const std::string &variableName, - const std::string separator) +Attribute IO::DefineAttribute(const std::string &name, const std::vector &strings, + const std::string &variableName, const std::string separator) { - helper::CheckForNullptr(m_IO, "for attribute " + name + - ", in call to IO::DefineAttribute"); + helper::CheckForNullptr(m_IO, "for attribute " + name + ", in call to IO::DefineAttribute"); - return Attribute(&m_IO->DefineAttribute( - name, strings.data(), strings.size(), variableName, separator)); + return Attribute(&m_IO->DefineAttribute(name, strings.data(), strings.size(), + variableName, separator)); } Attribute IO::InquireAttribute(const std::string &name) { - helper::CheckForNullptr(m_IO, "for attribute " + name + - ", in call to IO::InquireAttribute"); + helper::CheckForNullptr(m_IO, "for attribute " + name + ", in call to IO::InquireAttribute"); core::AttributeBase *attribute = nullptr; const DataType type(m_IO->InquireAttributeType(name)); @@ -198,10 +180,10 @@ Attribute IO::InquireAttribute(const std::string &name) if (type == DataType::None) { } -#define declare_template_instantiation(T) \ - else if (type == helper::GetDataType()) \ - { \ - attribute = m_IO->InquireAttribute(name); \ +#define declare_template_instantiation(T) \ + else if (type == helper::GetDataType()) \ + { \ + attribute = m_IO->InquireAttribute(name); \ } ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -211,8 +193,7 @@ Attribute IO::InquireAttribute(const std::string &name) bool IO::RemoveVariable(const std::string &name) { - helper::CheckForNullptr(m_IO, "for variable " + name + - ", in call to IO::RemoveVariable"); + helper::CheckForNullptr(m_IO, "for variable " + name + ", in call to IO::RemoveVariable"); return m_IO->RemoveVariable(name); } @@ -224,8 +205,7 @@ void IO::RemoveAllVariables() bool IO::RemoveAttribute(const std::string &name) { - helper::CheckForNullptr(m_IO, "for variable " + name + - ", in call to IO::RemoveAttribute"); + helper::CheckForNullptr(m_IO, "for variable " + name + ", in call to IO::RemoveAttribute"); return m_IO->RemoveAttribute(name); } @@ -237,8 +217,7 @@ void IO::RemoveAllAttributes() Engine IO::Open(const std::string &name, const int mode) { - helper::CheckForNullptr(m_IO, - "for engine " + name + ", in call to IO::Open"); + helper::CheckForNullptr(m_IO, "for engine " + name + ", in call to IO::Open"); return Engine(&m_IO->Open(name, static_cast(mode))); } @@ -262,15 +241,13 @@ std::map IO::AvailableAttributes() std::string IO::VariableType(const std::string &name) const { - helper::CheckForNullptr(m_IO, "for variable " + name + - " in call to IO::VariableType"); + helper::CheckForNullptr(m_IO, "for variable " + name + " in call to IO::VariableType"); return ToString(m_IO->InquireVariableType(name)); } std::string IO::AttributeType(const std::string &name) const { - helper::CheckForNullptr(m_IO, "for attribute " + name + - " in call to IO::AttributeType"); + helper::CheckForNullptr(m_IO, "for attribute " + name + " in call to IO::AttributeType"); return ToString(m_IO->InquireAttributeType(name)); } diff --git a/bindings/Python/py11IO.h b/bindings/Python/py11IO.h index 2e6126624a..35ac6e269d 100644 --- a/bindings/Python/py11IO.h +++ b/bindings/Python/py11IO.h @@ -48,30 +48,26 @@ class IO size_t AddTransport(const std::string type, const Params ¶meters); - void SetTransportParameter(const size_t transportIndex, - const std::string key, const std::string value); + void SetTransportParameter(const size_t transportIndex, const std::string key, + const std::string value); Variable DefineVariable(const std::string &name); - Variable DefineVariable(const std::string &name, - const pybind11::array &array, const Dims &shape, - const Dims &start, const Dims &count, + Variable DefineVariable(const std::string &name, const pybind11::array &array, + const Dims &shape, const Dims &start, const Dims &count, const bool isConstantDims); Variable InquireVariable(const std::string &name); - Attribute DefineAttribute(const std::string &name, - const pybind11::array &array, + Attribute DefineAttribute(const std::string &name, const pybind11::array &array, const std::string &variableName = "", const std::string separator = "/"); - Attribute DefineAttribute(const std::string &name, - const std::string &stringValue, + Attribute DefineAttribute(const std::string &name, const std::string &stringValue, const std::string &variableName = "", const std::string separator = "/"); - Attribute DefineAttribute(const std::string &name, - const std::vector &strings, + Attribute DefineAttribute(const std::string &name, const std::vector &strings, const std::string &variableName = "", const std::string separator = "/"); diff --git a/bindings/Python/py11IOMPI.cpp b/bindings/Python/py11IOMPI.cpp index 1a95f2c5e6..bae122dc7c 100644 --- a/bindings/Python/py11IOMPI.cpp +++ b/bindings/Python/py11IOMPI.cpp @@ -19,11 +19,9 @@ namespace py11 Engine IO::Open(const std::string &name, const int mode, MPI4PY_Comm comm) { - helper::CheckForNullptr(m_IO, - "for engine " + name + ", in call to IO::Open"); + helper::CheckForNullptr(m_IO, "for engine " + name + ", in call to IO::Open"); - return Engine(&m_IO->Open(name, static_cast(mode), - helper::CommDupMPI(comm))); + return Engine(&m_IO->Open(name, static_cast(mode), helper::CommDupMPI(comm))); } } // end namespace py11 diff --git a/bindings/Python/py11Operator.cpp b/bindings/Python/py11Operator.cpp index 90f706e7dc..f89203394f 100644 --- a/bindings/Python/py11Operator.cpp +++ b/bindings/Python/py11Operator.cpp @@ -33,8 +33,8 @@ void Operator::SetParameter(const std::string key, const std::string value) { if (m_Parameters == nullptr) { - helper::Log("PythonAPI", "Operator", "SetParameter()", - "Operator is nullptr", helper::LogMode::EXCEPTION); + helper::Log("PythonAPI", "Operator", "SetParameter()", "Operator is nullptr", + helper::LogMode::EXCEPTION); } (*m_Parameters)[key] = value; } @@ -43,17 +43,14 @@ Params &Operator::Parameters() const { if (m_Parameters == nullptr) { - helper::Log("PythonAPI", "Operator", "Parameter()", - "Operator is nullptr", helper::LogMode::EXCEPTION); + helper::Log("PythonAPI", "Operator", "Parameter()", "Operator is nullptr", + helper::LogMode::EXCEPTION); } return *m_Parameters; } // PRIVATE -Operator::Operator(const std::string &type, Params *params) -: m_Parameters(params), m_Type(type) -{ -} +Operator::Operator(const std::string &type, Params *params) : m_Parameters(params), m_Type(type) {} } // end namespace py11 } // end namespace adios2 diff --git a/bindings/Python/py11Query.cpp b/bindings/Python/py11Query.cpp index 8d097eeba5..87c2014967 100644 --- a/bindings/Python/py11Query.cpp +++ b/bindings/Python/py11Query.cpp @@ -19,18 +19,14 @@ Query::Query(adios2::query::Worker *qw) : m_QueryWorker(qw) {} Query::Query(std::string queryFile, Engine reader) { - adios2::query::Worker *m = - adios2::query::GetWorker(queryFile, reader.m_Engine); + adios2::query::Worker *m = adios2::query::GetWorker(queryFile, reader.m_Engine); if (m == nullptr) throw std::invalid_argument("ERROR: unable to construct query. "); m_QueryWorker = std::make_shared(std::move(*m)); delete m; } -Query::operator bool() const noexcept -{ - return (m_QueryWorker == nullptr) ? false : true; -} +Query::operator bool() const noexcept { return (m_QueryWorker == nullptr) ? false : true; } std::vector> Query::GetResult() { diff --git a/bindings/Python/py11Variable.cpp b/bindings/Python/py11Variable.cpp index e333af189c..2a57ef6ba2 100644 --- a/bindings/Python/py11Variable.cpp +++ b/bindings/Python/py11Variable.cpp @@ -19,10 +19,7 @@ namespace py11 Variable::Variable(core::VariableBase *variable) : m_VariableBase(variable) {} -Variable::operator bool() const noexcept -{ - return (m_VariableBase == nullptr) ? false : true; -} +Variable::operator bool() const noexcept { return (m_VariableBase == nullptr) ? false : true; } void Variable::SetShape(const Dims &shape) { @@ -32,29 +29,25 @@ void Variable::SetShape(const Dims &shape) void Variable::SetBlockSelection(const size_t blockID) { - helper::CheckForNullptr(m_VariableBase, - "in call to Variable::SetBlockSelection"); + helper::CheckForNullptr(m_VariableBase, "in call to Variable::SetBlockSelection"); m_VariableBase->SetBlockSelection(blockID); } void Variable::SetSelection(const Box &selection) { - helper::CheckForNullptr(m_VariableBase, - "in call to Variable::SetSelection"); + helper::CheckForNullptr(m_VariableBase, "in call to Variable::SetSelection"); m_VariableBase->SetSelection(selection); } void Variable::SetStepSelection(const Box &stepSelection) { - helper::CheckForNullptr(m_VariableBase, - "in call to Variable::SetStepSelection"); + helper::CheckForNullptr(m_VariableBase, "in call to Variable::SetStepSelection"); m_VariableBase->SetStepSelection(stepSelection); } size_t Variable::SelectionSize() const { - helper::CheckForNullptr(m_VariableBase, - "in call to Variable::SelectionSize"); + helper::CheckForNullptr(m_VariableBase, "in call to Variable::SelectionSize"); const adios2::DataType typeCpp = m_VariableBase->m_Type; size_t size = 0; @@ -63,12 +56,12 @@ size_t Variable::SelectionSize() const { // not supported } -#define declare_template_instantiation(T) \ - else if (typeCpp == adios2::helper::GetDataType()) \ - { \ - const adios2::core::Variable *variable = \ - dynamic_cast *>(m_VariableBase); \ - size = variable->SelectionSize(); \ +#define declare_template_instantiation(T) \ + else if (typeCpp == adios2::helper::GetDataType()) \ + { \ + const adios2::core::Variable *variable = \ + dynamic_cast *>(m_VariableBase); \ + size = variable->SelectionSize(); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -78,8 +71,7 @@ size_t Variable::SelectionSize() const size_t Variable::AddOperation(const Operator op, const Params ¶meters) { - helper::CheckForNullptr(m_VariableBase, - "in call to Variable::AddOperation"); + helper::CheckForNullptr(m_VariableBase, "in call to Variable::AddOperation"); auto params = op.Parameters(); for (const auto &p : parameters) { @@ -136,12 +128,12 @@ Dims Variable::Shape(const size_t step) const { // not supported } -#define declare_template_instantiation(T) \ - else if (typeCpp == adios2::helper::GetDataType()) \ - { \ - const adios2::core::Variable *variable = \ - dynamic_cast *>(m_VariableBase); \ - shape = variable->Shape(step); \ +#define declare_template_instantiation(T) \ + else if (typeCpp == adios2::helper::GetDataType()) \ + { \ + const adios2::core::Variable *variable = \ + dynamic_cast *>(m_VariableBase); \ + shape = variable->Shape(step); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -166,12 +158,12 @@ Dims Variable::Count() const { // not supported } -#define declare_template_instantiation(T) \ - else if (typeCpp == adios2::helper::GetDataType()) \ - { \ - const adios2::core::Variable *variable = \ - dynamic_cast *>(m_VariableBase); \ - count = variable->Count(); \ +#define declare_template_instantiation(T) \ + else if (typeCpp == adios2::helper::GetDataType()) \ + { \ + const adios2::core::Variable *variable = \ + dynamic_cast *>(m_VariableBase); \ + count = variable->Count(); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation diff --git a/bindings/Python/py11glue.cpp b/bindings/Python/py11glue.cpp index 0fc65fb9dd..b9f239b603 100644 --- a/bindings/Python/py11glue.cpp +++ b/bindings/Python/py11glue.cpp @@ -58,8 +58,7 @@ struct type_caster { if (import_mpi4py() < 0) { - throw std::runtime_error( - "ERROR: mpi4py not loaded correctly\n"); /* Python 2.X */ + throw std::runtime_error("ERROR: mpi4py not loaded correctly\n"); /* Python 2.X */ } } // If src is not actually a MPI4PY communicator, the next @@ -82,16 +81,13 @@ struct type_caster #if ADIOS2_USE_MPI adios2::py11::File OpenMPI(const std::string &name, const std::string mode, - adios2::py11::MPI4PY_Comm comm, - const std::string enginetype) + adios2::py11::MPI4PY_Comm comm, const std::string enginetype) { return adios2::py11::File(name, mode, comm, enginetype); } -adios2::py11::File OpenConfigMPI(const std::string &name, - const std::string mode, - adios2::py11::MPI4PY_Comm comm, - const std::string &configfile, +adios2::py11::File OpenConfigMPI(const std::string &name, const std::string mode, + adios2::py11::MPI4PY_Comm comm, const std::string &configfile, const std::string ioinconfigfile) { return adios2::py11::File(name, mode, comm, configfile, ioinconfigfile); @@ -105,8 +101,7 @@ adios2::py11::File Open(const std::string &name, const std::string mode, } adios2::py11::File OpenConfig(const std::string &name, const std::string mode, - const std::string configfile, - const std::string ioinconfigfile) + const std::string configfile, const std::string ioinconfigfile) { return adios2::py11::File(name, mode, configfile, ioinconfigfile); } @@ -153,8 +148,8 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) .export_values(); #if ADIOS2_USE_MPI - m.def("open", &OpenMPI, pybind11::arg("name"), pybind11::arg("mode"), - pybind11::arg("comm"), pybind11::arg("engine_type") = "BPFile", R"md( + m.def("open", &OpenMPI, pybind11::arg("name"), pybind11::arg("mode"), pybind11::arg("comm"), + pybind11::arg("engine_type") = "BPFile", R"md( Simple API MPI open, based on python IO. Allows for passing parameters in source code. @@ -178,8 +173,8 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md"); m.def("open", &OpenConfigMPI, pybind11::arg("name"), pybind11::arg("mode"), - pybind11::arg("comm"), pybind11::arg("config_file"), - pybind11::arg("io_in_config_file"), R"md( + pybind11::arg("comm"), pybind11::arg("config_file"), pybind11::arg("io_in_config_file"), + R"md( Simple API MPI open, based on python IO. Allows for passing a runtime configuration file in xml format and the name of the io element related to the returning File. @@ -207,14 +202,12 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md"); #endif - m.def("open", &Open, "High-level API, file object open", - pybind11::arg("name"), pybind11::arg("mode"), - pybind11::arg("engine_type") = "BPFile"); + m.def("open", &Open, "High-level API, file object open", pybind11::arg("name"), + pybind11::arg("mode"), pybind11::arg("engine_type") = "BPFile"); - m.def("open", &OpenConfig, - "High-level API, file object open with a runtime config file", - pybind11::arg("name"), pybind11::arg("mode"), - pybind11::arg("config_file"), pybind11::arg("io_in_config_file")); + m.def("open", &OpenConfig, "High-level API, file object open with a runtime config file", + pybind11::arg("name"), pybind11::arg("mode"), pybind11::arg("config_file"), + pybind11::arg("io_in_config_file")); pybind11::class_(m, "ADIOS") // Python 2 @@ -240,8 +233,7 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) .def(pybind11::init(), "adios2 module starting point, constructs an ADIOS class object", pybind11::arg("comm")) - .def(pybind11::init(), + .def(pybind11::init(), "adios2 module starting point, constructs an ADIOS class object", pybind11::arg("configFile"), pybind11::arg("comm")) #endif @@ -285,27 +277,22 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) pybind11::arg("parameters") = adios2::Params()) .def("SetParameter", &adios2::py11::IO::SetParameter) .def("Parameters", &adios2::py11::IO::Parameters) - .def("AddTransport", &adios2::py11::IO::AddTransport, - pybind11::arg("type"), + .def("AddTransport", &adios2::py11::IO::AddTransport, pybind11::arg("type"), pybind11::arg("parameters") = adios2::Params()) .def("DefineVariable", (adios2::py11::Variable(adios2::py11::IO::*)( - const std::string &, const pybind11::array &, - const adios2::Dims &, const adios2::Dims &, - const adios2::Dims &, const bool)) & + const std::string &, const pybind11::array &, const adios2::Dims &, + const adios2::Dims &, const adios2::Dims &, const bool)) & adios2::py11::IO::DefineVariable, - pybind11::return_value_policy::move, pybind11::arg("name"), - pybind11::arg("array"), pybind11::arg("shape") = adios2::Dims(), - pybind11::arg("start") = adios2::Dims(), - pybind11::arg("count") = adios2::Dims(), - pybind11::arg("isConstantDims") = false) + pybind11::return_value_policy::move, pybind11::arg("name"), pybind11::arg("array"), + pybind11::arg("shape") = adios2::Dims(), pybind11::arg("start") = adios2::Dims(), + pybind11::arg("count") = adios2::Dims(), pybind11::arg("isConstantDims") = false) - .def( - "DefineVariable", - (adios2::py11::Variable(adios2::py11::IO::*)(const std::string &)) & - adios2::py11::IO::DefineVariable, - pybind11::return_value_policy::move, pybind11::arg("name")) + .def("DefineVariable", + (adios2::py11::Variable(adios2::py11::IO::*)(const std::string &)) & + adios2::py11::IO::DefineVariable, + pybind11::return_value_policy::move, pybind11::arg("name")) .def("InquireVariable", &adios2::py11::IO::InquireVariable, pybind11::return_value_policy::move) @@ -315,41 +302,34 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) .def("DefineAttribute", (adios2::py11::Attribute(adios2::py11::IO::*)( - const std::string &, const pybind11::array &, - const std::string &, const std::string)) & - adios2::py11::IO::DefineAttribute, - pybind11::arg("name"), pybind11::arg("array"), - pybind11::arg("variable_name") = "", - pybind11::arg("separator") = "/", - pybind11::return_value_policy::move) - - .def("DefineAttribute", - (adios2::py11::Attribute(adios2::py11::IO::*)( - const std::string &, const std::string &, const std::string &, + const std::string &, const pybind11::array &, const std::string &, const std::string)) & adios2::py11::IO::DefineAttribute, - pybind11::arg("name"), pybind11::arg("stringValue"), - pybind11::arg("variable_name") = "", - pybind11::arg("separator") = "/", - pybind11::return_value_policy::move) + pybind11::arg("name"), pybind11::arg("array"), pybind11::arg("variable_name") = "", + pybind11::arg("separator") = "/", pybind11::return_value_policy::move) + + .def( + "DefineAttribute", + (adios2::py11::Attribute(adios2::py11::IO::*)(const std::string &, const std::string &, + const std::string &, const std::string)) & + adios2::py11::IO::DefineAttribute, + pybind11::arg("name"), pybind11::arg("stringValue"), + pybind11::arg("variable_name") = "", pybind11::arg("separator") = "/", + pybind11::return_value_policy::move) .def("DefineAttribute", (adios2::py11::Attribute(adios2::py11::IO::*)( - const std::string &, const std::vector &, - const std::string &, const std::string)) & + const std::string &, const std::vector &, const std::string &, + const std::string)) & adios2::py11::IO::DefineAttribute, - pybind11::arg("name"), pybind11::arg("strings"), - pybind11::arg("variable_name") = "", - pybind11::arg("separator") = "/", - pybind11::return_value_policy::move) + pybind11::arg("name"), pybind11::arg("strings"), pybind11::arg("variable_name") = "", + pybind11::arg("separator") = "/", pybind11::return_value_policy::move) - .def("Open", (adios2::py11::Engine(adios2::py11::IO::*)( - const std::string &, const int)) & + .def("Open", (adios2::py11::Engine(adios2::py11::IO::*)(const std::string &, const int)) & adios2::py11::IO::Open) #if ADIOS2_USE_MPI - .def("Open", (adios2::py11::Engine(adios2::py11::IO::*)( - const std::string &, const int, - adios2::py11::MPI4PY_Comm comm)) & + .def("Open", (adios2::py11::Engine(adios2::py11::IO::*)(const std::string &, const int, + adios2::py11::MPI4PY_Comm comm)) & adios2::py11::IO::Open) #endif .def("AvailableVariables", &adios2::py11::IO::AvailableVariables) @@ -373,10 +353,9 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) const bool opBool = query ? true : false; return opBool; }) - .def( - pybind11::init(), - "adios2 query construction, a xml query File and a read engine", - pybind11::arg("queryFile"), pybind11::arg("reader") = true) + .def(pybind11::init(), + "adios2 query construction, a xml query File and a read engine", + pybind11::arg("queryFile"), pybind11::arg("reader") = true) .def("GetResult", &adios2::py11::Query::GetResult); @@ -444,27 +423,23 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) return opBool; }) .def("BeginStep", - (adios2::StepStatus(adios2::py11::Engine::*)( - const adios2::StepMode, const float)) & + (adios2::StepStatus(adios2::py11::Engine::*)(const adios2::StepMode, const float)) & adios2::py11::Engine::BeginStep, pybind11::arg("mode"), pybind11::arg("timeoutSeconds") = -1.f, pybind11::return_value_policy::move) .def("BeginStep", - (adios2::StepStatus(adios2::py11::Engine::*)()) & - adios2::py11::Engine::BeginStep, + (adios2::StepStatus(adios2::py11::Engine::*)()) & adios2::py11::Engine::BeginStep, pybind11::return_value_policy::move) .def("Put", - (void(adios2::py11::Engine::*)(adios2::py11::Variable, - const pybind11::array &, + (void(adios2::py11::Engine::*)(adios2::py11::Variable, const pybind11::array &, const adios2::Mode launch)) & adios2::py11::Engine::Put, pybind11::arg("variable"), pybind11::arg("array"), pybind11::arg("launch") = adios2::Mode::Deferred) - .def("Put", (void(adios2::py11::Engine::*)(adios2::py11::Variable, - const std::string &)) & + .def("Put", (void(adios2::py11::Engine::*)(adios2::py11::Variable, const std::string &)) & adios2::py11::Engine::Put) .def("PerformPuts", &adios2::py11::Engine::PerformPuts) @@ -472,8 +447,7 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) .def("PerformDataWrite", &adios2::py11::Engine::PerformDataWrite) .def("Get", - (void(adios2::py11::Engine::*)(adios2::py11::Variable, - pybind11::array &, + (void(adios2::py11::Engine::*)(adios2::py11::Variable, pybind11::array &, const adios2::Mode launch)) & adios2::py11::Engine::Get, pybind11::arg("variable"), pybind11::arg("array"), @@ -483,8 +457,7 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) (std::string(adios2::py11::Engine::*)(adios2::py11::Variable, const adios2::Mode launch)) & adios2::py11::Engine::Get, - pybind11::arg("variable"), - pybind11::arg("launch") = adios2::Mode::Deferred) + pybind11::arg("variable"), pybind11::arg("launch") = adios2::Mode::Deferred) .def("PerformGets", &adios2::py11::Engine::PerformGets) @@ -492,8 +465,7 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) .def("Flush", &adios2::py11::Engine::Flush) - .def("Close", &adios2::py11::Engine::Close, - pybind11::arg("transportIndex") = -1) + .def("Close", &adios2::py11::Engine::Close, pybind11::arg("transportIndex") = -1) .def("CurrentStep", &adios2::py11::Engine::CurrentStep) @@ -503,11 +475,9 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) .def("Steps", &adios2::py11::Engine::Steps) - .def("LockWriterDefinitions", - &adios2::py11::Engine::LockWriterDefinitions) + .def("LockWriterDefinitions", &adios2::py11::Engine::LockWriterDefinitions) - .def("LockReaderSelections", - &adios2::py11::Engine::LockReaderSelections) + .def("LockReaderSelections", &adios2::py11::Engine::LockReaderSelections) .def("BlocksInfo", &adios2::py11::Engine::BlocksInfo); @@ -531,15 +501,13 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) pybind11::class_(m, "File") .def("__repr__", [](const adios2::py11::File &stream) { - return ""; + return ""; }) // enter and exit are defined for the with-as operator in Python - .def("__enter__", - [](const adios2::py11::File &stream) { return stream; }) - .def("__exit__", - [](adios2::py11::File &stream, pybind11::args) { stream.Close(); }) + .def("__enter__", [](const adios2::py11::File &stream) { return stream; }) + .def("__exit__", [](adios2::py11::File &stream, pybind11::args) { stream.Close(); }) .def( "__iter__", [](adios2::py11::File &stream) { return stream; }, pybind11::keep_alive<0, 1>()) @@ -552,8 +520,8 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) return stream; }) - .def("set_parameter", &adios2::py11::File::SetParameter, - pybind11::arg("key"), pybind11::arg("value"), R"md( + .def("set_parameter", &adios2::py11::File::SetParameter, pybind11::arg("key"), + pybind11::arg("value"), R"md( Sets a single parameter. Overwrites value if key exists. Parameters @@ -564,8 +532,8 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) parameter value )md") - .def("set_parameters", &adios2::py11::File::SetParameters, - pybind11::arg("parameters"), R"md( + .def("set_parameters", &adios2::py11::File::SetParameters, pybind11::arg("parameters"), + R"md( Sets parameters using a dictionary. Removes any previous parameter. @@ -631,15 +599,12 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("write", - (void(adios2::py11::File::*)( - const std::string &, const pybind11::array &, - const adios2::Dims &, const adios2::Dims &, - const adios2::Dims &, const bool)) & + (void(adios2::py11::File::*)(const std::string &, const pybind11::array &, + const adios2::Dims &, const adios2::Dims &, + const adios2::Dims &, const bool)) & adios2::py11::File::Write, - pybind11::arg("name"), pybind11::arg("array"), - pybind11::arg("shape") = adios2::Dims(), - pybind11::arg("start") = adios2::Dims(), - pybind11::arg("count") = adios2::Dims(), + pybind11::arg("name"), pybind11::arg("array"), pybind11::arg("shape") = adios2::Dims(), + pybind11::arg("start") = adios2::Dims(), pybind11::arg("count") = adios2::Dims(), pybind11::arg("end_step") = false, R"md( writes a self-describing array (numpy) variable @@ -669,13 +634,11 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) .def("write", (void(adios2::py11::File::*)( - const std::string &, const pybind11::array &, - const adios2::Dims &, const adios2::Dims &, - const adios2::Dims &, const adios2::vParams &, const bool)) & + const std::string &, const pybind11::array &, const adios2::Dims &, + const adios2::Dims &, const adios2::Dims &, const adios2::vParams &, const bool)) & adios2::py11::File::Write, - pybind11::arg("name"), pybind11::arg("array"), - pybind11::arg("shape"), pybind11::arg("start"), - pybind11::arg("count"), pybind11::arg("operations"), + pybind11::arg("name"), pybind11::arg("array"), pybind11::arg("shape"), + pybind11::arg("start"), pybind11::arg("count"), pybind11::arg("operations"), pybind11::arg("end_step") = false, R"md( writes a self-describing array (numpy) variable with operations @@ -705,12 +668,10 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("write", - (void(adios2::py11::File::*)(const std::string &, - const pybind11::array &, const bool, + (void(adios2::py11::File::*)(const std::string &, const pybind11::array &, const bool, const bool)) & adios2::py11::File::Write, - pybind11::arg("name"), pybind11::arg("array"), - pybind11::arg("local_value") = false, + pybind11::arg("name"), pybind11::arg("array"), pybind11::arg("local_value") = false, pybind11::arg("end_step") = false, R"md( writes a self-describing single value array (numpy) variable @@ -730,12 +691,10 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("write", - (void(adios2::py11::File::*)(const std::string &, - const std::string &, const bool, + (void(adios2::py11::File::*)(const std::string &, const std::string &, const bool, const bool)) & adios2::py11::File::Write, - pybind11::arg("name"), pybind11::arg("string"), - pybind11::arg("local_value") = false, + pybind11::arg("name"), pybind11::arg("string"), pybind11::arg("local_value") = false, pybind11::arg("end_step") = false, R"md( writes a self-describing single value string variable @@ -755,14 +714,11 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("write_attribute", - (void(adios2::py11::File::*)( - const std::string &, const pybind11::array &, - const std::string &, const std::string, const bool)) & + (void(adios2::py11::File::*)(const std::string &, const pybind11::array &, + const std::string &, const std::string, const bool)) & adios2::py11::File::WriteAttribute, - pybind11::arg("name"), pybind11::arg("array"), - pybind11::arg("variable_name") = "", - pybind11::arg("separator") = "/", - pybind11::arg("end_step") = false, R"md( + pybind11::arg("name"), pybind11::arg("array"), pybind11::arg("variable_name") = "", + pybind11::arg("separator") = "/", pybind11::arg("end_step") = false, R"md( writes a self-describing single value array (numpy) variable Parameters @@ -786,13 +742,11 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("write_attribute", - (void(adios2::py11::File::*)( - const std::string &, const std::string &, const std::string &, - const std::string, const bool)) & + (void(adios2::py11::File::*)(const std::string &, const std::string &, + const std::string &, const std::string, const bool)) & adios2::py11::File::WriteAttribute, pybind11::arg("name"), pybind11::arg("string_value"), - pybind11::arg("variable_name") = "", - pybind11::arg("separator") = "/", + pybind11::arg("variable_name") = "", pybind11::arg("separator") = "/", pybind11::arg("end_step") = false, R"md( writes a self-describing single value array (numpy) variable @@ -817,13 +771,11 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("write_attribute", - (void(adios2::py11::File::*)( - const std::string &, const std::vector &, - const std::string &, const std::string, const bool)) & + (void(adios2::py11::File::*)(const std::string &, const std::vector &, + const std::string &, const std::string, const bool)) & adios2::py11::File::WriteAttribute, pybind11::arg("name"), pybind11::arg("string_array"), - pybind11::arg("variable_name") = "", - pybind11::arg("separator") = "/", + pybind11::arg("variable_name") = "", pybind11::arg("separator") = "/", pybind11::arg("end_step") = false, R"md( writes a self-describing single value array (numpy) variable @@ -848,11 +800,10 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("read_string", - (std::vector(adios2::py11::File::*)( - const std::string &, const size_t)) & + (std::vector(adios2::py11::File::*)(const std::string &, const size_t)) & adios2::py11::File::ReadString, - pybind11::return_value_policy::take_ownership, - pybind11::arg("name"), pybind11::arg("block_id") = 0, + pybind11::return_value_policy::take_ownership, pybind11::arg("name"), + pybind11::arg("block_id") = 0, R"md( Reads string value for current step (use for streaming mode step by step) @@ -874,13 +825,12 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("read_string", - (std::vector(adios2::py11::File::*)( - const std::string &, const size_t, const size_t, - const size_t)) & + (std::vector(adios2::py11::File::*)(const std::string &, const size_t, + const size_t, const size_t)) & adios2::py11::File::ReadString, - pybind11::return_value_policy::take_ownership, - pybind11::arg("name"), pybind11::arg("step_start"), - pybind11::arg("step_count"), pybind11::arg("block_id") = 0, + pybind11::return_value_policy::take_ownership, pybind11::arg("name"), + pybind11::arg("step_start"), pybind11::arg("step_count"), + pybind11::arg("block_id") = 0, R"md( Reads string value for a certain step (random access mode) @@ -904,11 +854,10 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("read", - (pybind11::array(adios2::py11::File::*)(const std::string &, - const size_t)) & + (pybind11::array(adios2::py11::File::*)(const std::string &, const size_t)) & adios2::py11::File::Read, - pybind11::return_value_policy::take_ownership, - pybind11::arg("name"), pybind11::arg("block_id") = 0, + pybind11::return_value_policy::take_ownership, pybind11::arg("name"), + pybind11::arg("block_id") = 0, R"md( Reads entire variable for current step (streaming mode step by step) @@ -927,13 +876,11 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("read", - (pybind11::array(adios2::py11::File::*)( - const std::string &, const adios2::Dims &, - const adios2::Dims &, const size_t)) & + (pybind11::array(adios2::py11::File::*)(const std::string &, const adios2::Dims &, + const adios2::Dims &, const size_t)) & adios2::py11::File::Read, - pybind11::return_value_policy::take_ownership, - pybind11::arg("name"), pybind11::arg("start") = adios2::Dims(), - pybind11::arg("count") = adios2::Dims(), + pybind11::return_value_policy::take_ownership, pybind11::arg("name"), + pybind11::arg("start") = adios2::Dims(), pybind11::arg("count") = adios2::Dims(), pybind11::arg("block_id") = 0, R"md( Reads a selection piece in dimension for current step @@ -960,16 +907,14 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) empty if exception is thrown )md") - .def( - "read", - (pybind11::array(adios2::py11::File::*)( - const std::string &, const adios2::Dims &, const adios2::Dims &, - const size_t, const size_t, const size_t)) & - adios2::py11::File::Read, - pybind11::return_value_policy::take_ownership, - pybind11::arg("name"), pybind11::arg("start"), - pybind11::arg("count"), pybind11::arg("step_start"), - pybind11::arg("step_count"), pybind11::arg("block_id") = 0, R"md( + .def("read", + (pybind11::array(adios2::py11::File::*)(const std::string &, const adios2::Dims &, + const adios2::Dims &, const size_t, + const size_t, const size_t)) & + adios2::py11::File::Read, + pybind11::return_value_policy::take_ownership, pybind11::arg("name"), + pybind11::arg("start"), pybind11::arg("count"), pybind11::arg("step_start"), + pybind11::arg("step_count"), pybind11::arg("block_id") = 0, R"md( Random access read allowed to select steps, only valid with File Engines @@ -998,12 +943,11 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) )md") .def("read_attribute", - (pybind11::array(adios2::py11::File::*)( - const std::string &, const std::string &, const std::string)) & + (pybind11::array(adios2::py11::File::*)(const std::string &, const std::string &, + const std::string)) & adios2::py11::File::ReadAttribute, - pybind11::return_value_policy::take_ownership, - pybind11::arg("name"), pybind11::arg("variable_name") = "", - pybind11::arg("separator") = "/", R"md( + pybind11::return_value_policy::take_ownership, pybind11::arg("name"), + pybind11::arg("variable_name") = "", pybind11::arg("separator") = "/", R"md( Reads a numpy based attribute Parameters @@ -1027,9 +971,8 @@ PYBIND11_MODULE(ADIOS2_PYTHON_MODULE_NAME, m) (std::vector(adios2::py11::File::*)( const std::string &, const std::string &, const std::string)) & adios2::py11::File::ReadAttributeString, - pybind11::return_value_policy::take_ownership, - pybind11::arg("name"), pybind11::arg("variable_name") = "", - pybind11::arg("separator") = "/", R"md( + pybind11::return_value_policy::take_ownership, pybind11::arg("name"), + pybind11::arg("variable_name") = "", pybind11::arg("separator") = "/", R"md( Read a string attribute Parameters diff --git a/bindings/Python/py11types.h b/bindings/Python/py11types.h index 9c130f17bc..96f784ba18 100644 --- a/bindings/Python/py11types.h +++ b/bindings/Python/py11types.h @@ -36,14 +36,11 @@ struct MPI4PY_Comm #endif -#define ADIOS2_FOREACH_PYTHON_TYPE_1ARG(MACRO) \ - ADIOS2_FOREACH_STDTYPE_1ARG(MACRO) +#define ADIOS2_FOREACH_PYTHON_TYPE_1ARG(MACRO) ADIOS2_FOREACH_STDTYPE_1ARG(MACRO) -#define ADIOS2_FOREACH_NUMPY_TYPE_1ARG(MACRO) \ - ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(MACRO) +#define ADIOS2_FOREACH_NUMPY_TYPE_1ARG(MACRO) ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(MACRO) -#define ADIOS2_FOREACH_NUMPY_ATTRIBUTE_TYPE_1ARG(MACRO) \ - ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(MACRO) +#define ADIOS2_FOREACH_NUMPY_ATTRIBUTE_TYPE_1ARG(MACRO) ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(MACRO) } // end namespace py11 } // end namespace adios2 diff --git a/examples/basics/globalArray/globalArray_write.cpp b/examples/basics/globalArray/globalArray_write.cpp index f12f225d1c..45c63c5c25 100644 --- a/examples/basics/globalArray/globalArray_write.cpp +++ b/examples/basics/globalArray/globalArray_write.cpp @@ -100,8 +100,8 @@ int main(int argc, char *argv[]) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces // adios2::SelectionBoundingBox sel(); - varGlobalArray.SetSelection(adios2::Box( - {static_cast(rank), 0}, {1, static_cast(Nx)})); + varGlobalArray.SetSelection(adios2::Box({static_cast(rank), 0}, + {1, static_cast(Nx)})); writer.Put(varGlobalArray, row.data()); writer.Put(varStep, step); diff --git a/examples/basics/joinedArray/joinedArray_write.cpp b/examples/basics/joinedArray/joinedArray_write.cpp index fd34596b8f..066ffd83f7 100644 --- a/examples/basics/joinedArray/joinedArray_write.cpp +++ b/examples/basics/joinedArray/joinedArray_write.cpp @@ -80,8 +80,8 @@ int main(int argc, char *argv[]) * Starting offset can be an empty vector * Only one global dimension can be joined */ - adios2::Variable varTable = io.DefineVariable( - "table", {adios2::JoinedDim, Ncols}, {}, {Nrows, Ncols}); + adios2::Variable varTable = + io.DefineVariable("table", {adios2::JoinedDim, Ncols}, {}, {Nrows, Ncols}); // adios2::Operator op = adios.DefineOperator("blosc", "blosc"); // varTable.AddOperation(op, {{"clevel", std::to_string(1)}}); @@ -98,8 +98,8 @@ int main(int argc, char *argv[]) { for (unsigned int col = 0; col < Ncols; col++) { - mytable[row * Ncols + col] = static_cast( - step * 10.0 + rank * 1.0 + row * 0.1 + col * 0.01); + mytable[row * Ncols + col] = + static_cast(step * 10.0 + rank * 1.0 + row * 0.1 + col * 0.01); } } diff --git a/examples/basics/localArray/localArray_read.cpp b/examples/basics/localArray/localArray_read.cpp index c3c37cb108..cc3dd6adb9 100644 --- a/examples/basics/localArray/localArray_read.cpp +++ b/examples/basics/localArray/localArray_read.cpp @@ -57,8 +57,7 @@ std::string DimsToString(const adios2::Dims &dims) return s; } -void ReadVariable(const std::string &name, adios2::IO &io, - adios2::Engine &reader, size_t step) +void ReadVariable(const std::string &name, adios2::IO &io, adios2::Engine &reader, size_t step) { adios2::Variable variable = io.InquireVariable(name); @@ -66,8 +65,8 @@ void ReadVariable(const std::string &name, adios2::IO &io, { auto blocksInfo = reader.BlocksInfo(variable, step); - std::cout << " " << name << " has " << blocksInfo.size() - << " blocks in step " << step << std::endl; + std::cout << " " << name << " has " << blocksInfo.size() << " blocks in step " << step + << std::endl; // create a data vector for each block std::vector> dataSet; @@ -89,8 +88,7 @@ void ReadVariable(const std::string &name, adios2::IO &io, i = 0; for (const auto &info : blocksInfo) { - std::cout << " block " << info.BlockID - << " size = " << DimsToString(info.Count) + std::cout << " block " << info.BlockID << " size = " << DimsToString(info.Count) << " offset = " << DimsToString(info.Start) << " : "; for (const auto datum : dataSet[i]) @@ -103,8 +101,7 @@ void ReadVariable(const std::string &name, adios2::IO &io, } else { - std::cout << " Variable " << name << " not found in step " << step - << std::endl; + std::cout << " Variable " << name << " not found in step " << step << std::endl; } } @@ -127,8 +124,7 @@ int main(int argc, char *argv[]) { // Begin step - adios2::StepStatus read_status = - reader.BeginStep(adios2::StepMode::Read, 10.0f); + adios2::StepStatus read_status = reader.BeginStep(adios2::StepMode::Read, 10.0f); if (read_status == adios2::StepStatus::NotReady) { // std::cout << "Stream not ready yet. Waiting...\n"; diff --git a/examples/basics/localArray/localArray_write.cpp b/examples/basics/localArray/localArray_write.cpp index d9541d9713..1bd4f4e199 100644 --- a/examples/basics/localArray/localArray_write.cpp +++ b/examples/basics/localArray/localArray_write.cpp @@ -99,15 +99,13 @@ int main(int argc, char *argv[]) * Global dimension and starting offset must be an empty vector * Here the size of the local array is the same on every process */ - adios2::Variable varV0 = - io.DefineVariable("v0", {}, {}, {Nglobal}); + adios2::Variable varV0 = io.DefineVariable("v0", {}, {}, {Nglobal}); /* * v1 is similar to v0 but on every process the local size * is a different value */ - adios2::Variable varV1 = - io.DefineVariable("v1", {}, {}, {Nx}); + adios2::Variable varV1 = io.DefineVariable("v1", {}, {}, {Nx}); /* * Define local array: type, name diff --git a/examples/basics/values/values_write.cpp b/examples/basics/values/values_write.cpp index c792b111a2..abdc33436d 100644 --- a/examples/basics/values/values_write.cpp +++ b/examples/basics/values/values_write.cpp @@ -106,8 +106,7 @@ int main(int argc, char *argv[]) // 1. Writing a global constant value only once if (step == 0) { - adios2::Variable varNproc = - io.InquireVariable("Nproc"); + adios2::Variable varNproc = io.InquireVariable("Nproc"); writer.Put(varNproc, nproc); } writer.Put(varStep, step); diff --git a/examples/cuda/cudaBPWriteRead.cu b/examples/cuda/cudaBPWriteRead.cu index 735486a799..1d2dcd4eda 100644 --- a/examples/cuda/cudaBPWriteRead.cu +++ b/examples/cuda/cudaBPWriteRead.cu @@ -17,8 +17,7 @@ __global__ void update_array(float *vect, int val) { vect[blockIdx.x] += val; } std::string engine("BP5"); -int BPWrite(const std::string fname, const size_t N, int nSteps, - const std::string engine) +int BPWrite(const std::string fname, const size_t N, int nSteps, const std::string engine) { // Initialize the simulation data float *gpuSimData; @@ -60,8 +59,7 @@ int BPWrite(const std::string fname, const size_t N, int nSteps, return 0; } -int BPRead(const std::string fname, const size_t N, int nSteps, - const std::string engine) +int BPRead(const std::string fname, const size_t N, int nSteps, const std::string engine) { // Create ADIOS structures adios2::ADIOS adios; @@ -86,8 +84,7 @@ int BPRead(const std::string fname, const size_t N, int nSteps, data.SetMemorySpace(adios2::MemorySpace::GPU); bpReader.Get(data, gpuSimData); //, adios2::Mode::Deferred); bpReader.EndStep(); - cudaMemcpy(simData.data(), gpuSimData, N * sizeof(float), - cudaMemcpyDeviceToHost); + cudaMemcpy(simData.data(), gpuSimData, N * sizeof(float), cudaMemcpyDeviceToHost); std::cout << "Simualation step " << step << " : "; std::cout << simData.size() << " elements: " << simData[1] << std::endl; } diff --git a/examples/experimental/runtimeconfig/hello/helloBPWriterXML.cpp b/examples/experimental/runtimeconfig/hello/helloBPWriterXML.cpp index 7aafb756f4..f6634b8ac4 100644 --- a/examples/experimental/runtimeconfig/hello/helloBPWriterXML.cpp +++ b/examples/experimental/runtimeconfig/hello/helloBPWriterXML.cpp @@ -48,8 +48,7 @@ int main(int argc, char *argv[]) { if (rank == 0) { - std::cerr << "Usage: " << argv[0] << " [/path/to/config.xml]" - << std::endl; + std::cerr << "Usage: " << argv[0] << " [/path/to/config.xml]" << std::endl; } return 1; } @@ -81,8 +80,7 @@ int main(int argc, char *argv[]) if (!bpWriter) { - throw std::ios_base::failure( - "ERROR: bpWriter not created at Open\n"); + throw std::ios_base::failure("ERROR: bpWriter not created at Open\n"); } /** Write variable for buffering */ @@ -93,15 +91,13 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) { - std::cout - << "IO System base failure exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "IO System base failure exception, STOPPING PROGRAM from rank " << rank + << "\n"; std::cout << e.what() << "\n"; } catch (std::exception &e) diff --git a/examples/experimental/runtimeconfig/hello/helloBPWriterXML_nompi.cpp b/examples/experimental/runtimeconfig/hello/helloBPWriterXML_nompi.cpp index 60d4934b64..07f5bedc19 100644 --- a/examples/experimental/runtimeconfig/hello/helloBPWriterXML_nompi.cpp +++ b/examples/experimental/runtimeconfig/hello/helloBPWriterXML_nompi.cpp @@ -36,8 +36,7 @@ int main(int argc, char *argv[]) } else { - std::cerr << "Usage: " << argv[0] << " [/path/to/config.xml]" - << std::endl; + std::cerr << "Usage: " << argv[0] << " [/path/to/config.xml]" << std::endl; return 1; } std::cout << "Using config file: " << configFile << std::endl; @@ -57,16 +56,15 @@ int main(int argc, char *argv[]) /** global array : name, { shape (total) }, { start (local) }, { count * (local) }, all are constant dimensions */ - adios2::Variable &bpFloats = bpIO.DefineVariable( - "bpFloats", {}, {}, {Nx}, adios2::ConstantDims); + adios2::Variable &bpFloats = + bpIO.DefineVariable("bpFloats", {}, {}, {Nx}, adios2::ConstantDims); /** Engine derived class, spawned to start IO operations */ auto bpWriter = bpIO.Open("myVector.bp", adios2::Mode::Write); if (!bpWriter) { - throw std::ios_base::failure( - "ERROR: bpWriter not created at Open\n"); + throw std::ios_base::failure("ERROR: bpWriter not created at Open\n"); } /** Write variable for buffering */ diff --git a/examples/fides/01_onecell/fides_onecell.cpp b/examples/fides/01_onecell/fides_onecell.cpp index afce3e9044..d02c82750d 100644 --- a/examples/fides/01_onecell/fides_onecell.cpp +++ b/examples/fides/01_onecell/fides_onecell.cpp @@ -42,8 +42,8 @@ int main(int argc, char *argv[]) io.DefineVariable("Mesh/Coords/Y", {NPOINTS}, {0}, {NPOINTS}); adios2::Variable varZ = io.DefineVariable("Mesh/Coords/Z", {NPOINTS}, {0}, {NPOINTS}); - adios2::Variable varCells = io.DefineVariable( - "Mesh/Cells", {NCELLS * NPOINTS}, {0}, {NCELLS * NPOINTS}); + adios2::Variable varCells = + io.DefineVariable("Mesh/Cells", {NCELLS * NPOINTS}, {0}, {NCELLS * NPOINTS}); adios2::Variable varStep = io.DefineVariable("step"); adios2::Variable varTime = io.DefineVariable("time"); diff --git a/examples/h5subfile/h5_subfile.cpp b/examples/h5subfile/h5_subfile.cpp index a980f0dbc8..09e3111ecf 100644 --- a/examples/h5subfile/h5_subfile.cpp +++ b/examples/h5subfile/h5_subfile.cpp @@ -41,12 +41,10 @@ void writeMe(adios2::IO &hdf5IO, int rank, int size, const char *testFileName) "true"); // set this if not all ranks are writting adios2::Variable h5Floats = hdf5IO.DefineVariable( - "h5Floats", {size * Nx, Ny}, {rank * Nx, 0}, {Nx, Ny}, - adios2::ConstantDims); + "h5Floats", {size * Nx, Ny}, {rank * Nx, 0}, {Nx, Ny}, adios2::ConstantDims); - adios2::Variable h5Ints = - hdf5IO.DefineVariable("h5Ints", {size * Nx, Ny}, {rank * Nx, 0}, - {Nx, Ny}, adios2::ConstantDims); + adios2::Variable h5Ints = hdf5IO.DefineVariable( + "h5Ints", {size * Nx, Ny}, {rank * Nx, 0}, {Nx, Ny}, adios2::ConstantDims); /** Engine derived class, spawned to start IO operations */ adios2::Engine hdf5Writer = hdf5IO.Open(testFileName, adios2::Mode::Write); @@ -87,23 +85,17 @@ void writeMe(adios2::IO &hdf5IO, int rank, int size, const char *testFileName) hdf5IO.DefineAttribute("adios2_schema/version_minor", std::to_string(ADIOS2_VERSION_MINOR)); hdf5IO.DefineAttribute("/adios2_schema/mesh/type", "explicit"); - hdf5IO.DefineAttribute("adios2_schema/mesh/dimension0", - m_globalDims[0]); - hdf5IO.DefineAttribute("adios2_schema/mesh/dimension1", - m_globalDims[1]); - hdf5IO.DefineAttribute("adios2_schema/mesh/dimension2", - m_globalDims[2]); - hdf5IO.DefineAttribute("adios2_schema/mesh/dimension3", - m_globalDims[3]); - hdf5IO.DefineAttribute("adios2_schema/mesh/dimension-num", - m_globalDims.size()); + hdf5IO.DefineAttribute("adios2_schema/mesh/dimension0", m_globalDims[0]); + hdf5IO.DefineAttribute("adios2_schema/mesh/dimension1", m_globalDims[1]); + hdf5IO.DefineAttribute("adios2_schema/mesh/dimension2", m_globalDims[2]); + hdf5IO.DefineAttribute("adios2_schema/mesh/dimension3", m_globalDims[3]); + hdf5IO.DefineAttribute("adios2_schema/mesh/dimension-num", m_globalDims.size()); hdf5Writer.Close(); } template -void ReadVarData(adios2::IO h5IO, adios2::Engine &h5Reader, - const std::string &name) +void ReadVarData(adios2::IO h5IO, adios2::Engine &h5Reader, const std::string &name) { adios2::Variable var = h5IO.InquireVariable(name); @@ -154,8 +146,7 @@ void readMe(adios2::IO &h5IO, int rank, int size, const char *fileName) /** Engine derived class, spawned to start IO operations */ adios2::Engine h5Reader = h5IO.Open(fileName, adios2::Mode::Read); - const std::map variables = - h5IO.AvailableVariables(); + const std::map variables = h5IO.AvailableVariables(); if (0 == rank) std::cout << " Num Vars: " << variables.size() << std::endl; @@ -167,8 +158,7 @@ void readMe(adios2::IO &h5IO, int rank, int size, const char *fileName) for (const auto ¶meter : variablePair.second) { - std::cout << "\t" << parameter.first << ": " << parameter.second - << "\n"; + std::cout << "\t" << parameter.first << ": " << parameter.second << "\n"; if (parameter.second == "double") { ReadVarData(h5IO, h5Reader, variablePair.first); @@ -188,8 +178,7 @@ void readMe(adios2::IO &h5IO, int rank, int size, const char *fileName) } } // variables - const std::map attributes = - h5IO.AvailableAttributes(); + const std::map attributes = h5IO.AvailableAttributes(); if (0 == rank) std::cout << "Num Attrs:" << attributes.size() << std::endl; @@ -201,8 +190,7 @@ void readMe(adios2::IO &h5IO, int rank, int size, const char *fileName) for (const auto ¶meter : attrPair.second) { - std::cout << "\t" << parameter.first << ": " << parameter.second - << "\n"; + std::cout << "\t" << parameter.first << ": " << parameter.second << "\n"; if (parameter.second == "double") { @@ -277,15 +265,13 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) { - std::cout - << "IO System base failure exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "IO System base failure exception, STOPPING PROGRAM from rank " << rank + << "\n"; std::cout << e.what() << "\n"; } catch (std::exception &e) diff --git a/examples/heatTransfer/inline/InlineIO.cpp b/examples/heatTransfer/inline/InlineIO.cpp index 61d34dd316..d3dae34038 100644 --- a/examples/heatTransfer/inline/InlineIO.cpp +++ b/examples/heatTransfer/inline/InlineIO.cpp @@ -31,19 +31,18 @@ InlineIO::InlineIO(const Settings &s, MPI_Comm comm) if (!inlineIO.InConfigFile()) { inlineIO.SetEngine("Inline"); - inlineIO.SetParameters( - {{"writerID", writerName}, {"readerID", readerName}}); + inlineIO.SetParameters({{"writerID", writerName}, {"readerID", readerName}}); } // define T as 2D global array - varT = inlineIO.DefineVariable( - "T", - // Global dimensions - {s.gndx, s.gndy}, - // starting offset of the local array in the global space - {s.offsx, s.offsy}, - // local size, could be defined later using SetSelection() - {s.ndx, s.ndy}); + varT = + inlineIO.DefineVariable("T", + // Global dimensions + {s.gndx, s.gndy}, + // starting offset of the local array in the global space + {s.offsx, s.offsy}, + // local size, could be defined later using SetSelection() + {s.ndx, s.ndy}); inlineWriter = inlineIO.Open(writerName, adios2::Mode::Write, comm); inlineReader = inlineIO.Open(readerName, adios2::Mode::Read, comm); @@ -80,8 +79,7 @@ const double *InlineIO::read(bool firstStep) // in this example we're only expecting one block if (blocksInfo.size() != 1) { - throw std::runtime_error( - "InlineIO::read found incorrect number of blocks"); + throw std::runtime_error("InlineIO::read found incorrect number of blocks"); } auto &info = blocksInfo[0]; diff --git a/examples/heatTransfer/inline/main.cpp b/examples/heatTransfer/inline/main.cpp index 09674a194d..8430281568 100644 --- a/examples/heatTransfer/inline/main.cpp +++ b/examples/heatTransfer/inline/main.cpp @@ -42,8 +42,7 @@ void printUsage() << " iterations: one step consist of this many iterations\n\n"; } -void Compute(const double *Tin, std::vector &Tout, - std::vector &dT, bool firstStep) +void Compute(const double *Tin, std::vector &Tout, std::vector &dT, bool firstStep) { /* Compute dT and * copy Tin into Tout as it will be used for calculating dT in the @@ -96,10 +95,8 @@ void setupOutputIO(const Settings &s, MPI_Comm comm) // For inline engine, there's no exchange of data between processes, // so the shape of variables to be written out for validation // is the same as the writer - vTout = outIO.DefineVariable("T", {s.gndx, s.gndy}, - {s.offsx, s.offsy}, {s.ndx, s.ndy}); - vdT = outIO.DefineVariable("dT", {s.gndx, s.gndy}, - {s.offsx, s.offsy}, {s.ndx, s.ndy}); + vTout = outIO.DefineVariable("T", {s.gndx, s.gndy}, {s.offsx, s.offsy}, {s.ndx, s.ndy}); + vdT = outIO.DefineVariable("dT", {s.gndx, s.gndy}, {s.offsx, s.offsy}, {s.ndx, s.ndy}); writer = outIO.Open(s.outputfile, adios2::Mode::Write, comm); } diff --git a/examples/heatTransfer/read/PrintDataStep.h b/examples/heatTransfer/read/PrintDataStep.h index 17a6a737d5..9fc3537e1d 100644 --- a/examples/heatTransfer/read/PrintDataStep.h +++ b/examples/heatTransfer/read/PrintDataStep.h @@ -32,12 +32,11 @@ void printDataStep(double *xy, T *size, T *offset, int rank, int step) } double *data = xy; uint64_t nelems = size[0] * size[1]; - myfile << "rank=" << rank << " size=" << size[0] << "x" << size[1] - << " offsets=" << offset[0] << ":" << offset[1] << " step=" << step - << std::endl; + myfile << "rank=" << rank << " size=" << size[0] << "x" << size[1] << " offsets=" << offset[0] + << ":" << offset[1] << " step=" << step << std::endl; - myfile << " time row columns " << offset[1] << "..." - << offset[1] + size[1] - 1 << std::endl; + myfile << " time row columns " << offset[1] << "..." << offset[1] + size[1] - 1 + << std::endl; myfile << " "; for (int j = 0; j < size[1]; j++) { @@ -51,8 +50,7 @@ void printDataStep(double *xy, T *size, T *offset, int rank, int step) myfile << std::setw(5) << step << std::setw(5) << offset[0] + i; for (int j = 0; j < size[1]; j++) { - myfile << std::setw(9) << std::setprecision(2) - << data[i * size[1] + j]; + myfile << std::setw(9) << std::setprecision(2) << data[i * size[1] + j]; } myfile << std::endl; } diff --git a/examples/heatTransfer/read/ReadSettings.cpp b/examples/heatTransfer/read/ReadSettings.cpp index 7db00ff2cc..d352d55f16 100644 --- a/examples/heatTransfer/read/ReadSettings.cpp +++ b/examples/heatTransfer/read/ReadSettings.cpp @@ -22,19 +22,17 @@ static unsigned int convertToUint(std::string varName, char *arg) long retval = std::strtol(arg, &end, 10); if (end[0] || errno == ERANGE) { - throw std::invalid_argument("Invalid value given for " + varName + - ": " + std::string(arg)); + throw std::invalid_argument("Invalid value given for " + varName + ": " + std::string(arg)); } if (retval < 0) { - throw std::invalid_argument("Negative value given for " + varName + - ": " + std::string(arg)); + throw std::invalid_argument("Negative value given for " + varName + ": " + + std::string(arg)); } return static_cast(retval); } -ReadSettings::ReadSettings(int argc, char *argv[], int rank, int nproc) -: rank{rank} +ReadSettings::ReadSettings(int argc, char *argv[], int rank, int nproc) : rank{rank} { if (argc < 6) { @@ -79,6 +77,6 @@ void ReadSettings::DecomposeArray(int gndx, int gndy) offset.push_back(offsx); offset.push_back(offsy); - std::cout << "rank " << rank << " reads 2D slice " << ndx << " x " << ndy - << " from offset (" << offsx << "," << offsy << ")" << std::endl; + std::cout << "rank " << rank << " reads 2D slice " << ndx << " x " << ndy << " from offset (" + << offsx << "," << offsy << ")" << std::endl; } diff --git a/examples/heatTransfer/read/ReadSettings.h b/examples/heatTransfer/read/ReadSettings.h index 9ac3cd0b79..5b5e158e67 100644 --- a/examples/heatTransfer/read/ReadSettings.h +++ b/examples/heatTransfer/read/ReadSettings.h @@ -33,10 +33,8 @@ class ReadSettings unsigned int posy; // Position of this process in Y dimension // Calculated in DecomposeArray - std::vector - readsize; // Local array size in X-Y dimensions per process - std::vector - offset; // Offset of local array in X-Y dimensions on this process + std::vector readsize; // Local array size in X-Y dimensions per process + std::vector offset; // Offset of local array in X-Y dimensions on this process ReadSettings(int argc, char *argv[], int rank, int nproc); void DecomposeArray(int gndx, int gndy); diff --git a/examples/heatTransfer/read/heatRead.cpp b/examples/heatTransfer/read/heatRead.cpp index f7b294d86e..d75b791ae2 100644 --- a/examples/heatTransfer/read/heatRead.cpp +++ b/examples/heatTransfer/read/heatRead.cpp @@ -34,8 +34,8 @@ void printUsage() << " M: number of processes in Y dimension\n\n"; } -void Compute(const std::vector &Tin, std::vector &Tout, - std::vector &dT, bool firstStep) +void Compute(const std::vector &Tin, std::vector &Tout, std::vector &dT, + bool firstStep) { /* Compute dT and * copy Tin into Tout as it will be used for calculating dT in the @@ -115,8 +115,7 @@ int main(int argc, char *argv[]) adios2::IO outIO = ad.DeclareIO("readerOutput"); - adios2::Engine reader = - inIO.Open(settings.inputfile, adios2::Mode::Read, mpiReaderComm); + adios2::Engine reader = inIO.Open(settings.inputfile, adios2::Mode::Read, mpiReaderComm); std::vector Tin; std::vector Tout; @@ -130,8 +129,7 @@ int main(int argc, char *argv[]) while (true) { - adios2::StepStatus status = - reader.BeginStep(adios2::StepMode::Read); + adios2::StepStatus status = reader.BeginStep(adios2::StepMode::Read); if (status != adios2::StepStatus::OK) { break; @@ -170,12 +168,11 @@ int main(int argc, char *argv[]) dT.resize(settings.readsize[0] * settings.readsize[1]); /* Create output variables and open output stream */ - vTout = outIO.DefineVariable( - "T", {gndx, gndy}, settings.offset, settings.readsize); - vdT = outIO.DefineVariable( - "dT", {gndx, gndy}, settings.offset, settings.readsize); - writer = outIO.Open(settings.outputfile, adios2::Mode::Write, - mpiReaderComm); + vTout = outIO.DefineVariable("T", {gndx, gndy}, settings.offset, + settings.readsize); + vdT = outIO.DefineVariable("dT", {gndx, gndy}, settings.offset, + settings.readsize); + writer = outIO.Open(settings.outputfile, adios2::Mode::Write, mpiReaderComm); MPI_Barrier(mpiReaderComm); // sync processes just for stdout } @@ -186,8 +183,7 @@ int main(int argc, char *argv[]) } // Create a 2D selection for the subset - vTin.SetSelection( - adios2::Box(settings.offset, settings.readsize)); + vTin.SetSelection(adios2::Box(settings.offset, settings.readsize)); // Arrays are read by scheduling one or more of them // and performing the reads at once diff --git a/examples/heatTransfer/read_fileonly/PrintData.h b/examples/heatTransfer/read_fileonly/PrintData.h index e0876ed821..c458e3aab0 100644 --- a/examples/heatTransfer/read_fileonly/PrintData.h +++ b/examples/heatTransfer/read_fileonly/PrintData.h @@ -28,11 +28,10 @@ void printData(double *xy, T *size, T *offset, int rank, size_t steps) for (size_t step = 0; step < steps; step++) { myfile << "rank=" << rank << " size=" << size[0] << "x" << size[1] - << " offsets=" << offset[0] << ":" << offset[1] - << " step=" << step << std::endl; + << " offsets=" << offset[0] << ":" << offset[1] << " step=" << step << std::endl; - myfile << " time row columns " << offset[1] << "..." - << offset[1] + size[1] - 1 << std::endl; + myfile << " time row columns " << offset[1] << "..." << offset[1] + size[1] - 1 + << std::endl; myfile << " "; for (int j = 0; j < static_cast(size[1]); j++) { @@ -46,8 +45,7 @@ void printData(double *xy, T *size, T *offset, int rank, size_t steps) myfile << std::setw(5) << step << std::setw(5) << offset[0] + i; for (int j = 0; j < static_cast(size[1]); j++) { - myfile << std::setw(9) << std::setprecision(2) - << data[i * size[1] + j]; + myfile << std::setw(9) << std::setprecision(2) << data[i * size[1] + j]; } myfile << std::endl; } diff --git a/examples/heatTransfer/read_fileonly/heatRead_adios1.cpp b/examples/heatTransfer/read_fileonly/heatRead_adios1.cpp index 2da8ca6f19..c727a9e825 100644 --- a/examples/heatTransfer/read_fileonly/heatRead_adios1.cpp +++ b/examples/heatTransfer/read_fileonly/heatRead_adios1.cpp @@ -74,8 +74,8 @@ int main(int argc, char *argv[]) readsize[1] = gndy - readsize[1] * (nproc - 1); } - std::cout << "rank " << rank << " reads " << readsize[1] - << " columns from offset " << offset[1] << std::endl; + std::cout << "rank " << rank << " reads " << readsize[1] << " columns from offset " << offset[1] + << std::endl; ADIOS_VARINFO *vT = adios_inq_var(f, "T"); diff --git a/examples/heatTransfer/read_fileonly/heatRead_adios2.cpp b/examples/heatTransfer/read_fileonly/heatRead_adios2.cpp index c12fa78b1e..af7d6dfb5e 100644 --- a/examples/heatTransfer/read_fileonly/heatRead_adios2.cpp +++ b/examples/heatTransfer/read_fileonly/heatRead_adios2.cpp @@ -62,22 +62,19 @@ int main(int argc, char *argv[]) bpReaderIO.AddTransport("File", {{"verbose", "4"}}); } - adios2::Engine bpReader = - bpReaderIO.Open(inputfile, adios2::Mode::Read, mpiReaderComm); + adios2::Engine bpReader = bpReaderIO.Open(inputfile, adios2::Mode::Read, mpiReaderComm); unsigned int gndx = 0; unsigned int gndy = 0; // bpReader->Read("gndx", &gndx); // bpReader->Read("gndy", &gndy); - adios2::Variable vgndx = - bpReaderIO.InquireVariable("gndx"); + adios2::Variable vgndx = bpReaderIO.InquireVariable("gndx"); (void)vgndx; // gndx = vgndx.GetData()[0]; - adios2::Variable vgndy = - bpReaderIO.InquireVariable("gndy"); + adios2::Variable vgndy = bpReaderIO.InquireVariable("gndy"); // gndy = vgndy.GetData()[0]; if (rank == 0) @@ -96,8 +93,8 @@ int main(int argc, char *argv[]) readsize[1] = gndy - readsize[1] * (nproc - 1); } - std::cout << "rank " << rank << " reads " << readsize[1] - << " columns from offset " << offset[1] << std::endl; + std::cout << "rank " << rank << " reads " << readsize[1] << " columns from offset " << offset[1] + << std::endl; adios2::Variable vT = bpReaderIO.InquireVariable("T"); diff --git a/examples/heatTransfer/write/HeatTransfer.cpp b/examples/heatTransfer/write/HeatTransfer.cpp index d9b2d29b19..6bac5015f2 100644 --- a/examples/heatTransfer/write/HeatTransfer.cpp +++ b/examples/heatTransfer/write/HeatTransfer.cpp @@ -25,8 +25,8 @@ HeatTransfer::HeatTransfer(const Settings &settings) : m_s(settings), m_T1Buf(new double[(m_s.ndx + 2) * (m_s.ndy + 2)]), - m_T2Buf(new double[(m_s.ndx + 2) * (m_s.ndy + 2)]), - m_T1(new double *[m_s.ndx + 2]), m_T2(new double *[m_s.ndx + 2]) + m_T2Buf(new double[(m_s.ndx + 2) * (m_s.ndy + 2)]), m_T1(new double *[m_s.ndx + 2]), + m_T2(new double *[m_s.ndx + 2]) { m_T1[0] = m_T1Buf.get(); m_T2[0] = m_T2Buf.get(); @@ -43,8 +43,7 @@ void HeatTransfer::init(bool init_with_rank) { if (init_with_rank) { - std::fill_n(m_T1Buf.get(), (m_s.ndx + 2) * (m_s.ndy + 2), - static_cast(m_s.rank)); + std::fill_n(m_T1Buf.get(), (m_s.ndx + 2) * (m_s.ndy + 2), static_cast(m_s.rank)); } else { @@ -58,9 +57,8 @@ void HeatTransfer::init(bool init_with_rank) for (unsigned int j = 0; j < m_s.ndy + 2; j++) { y = 0.0 + hy * (j - 1); - m_T1[i][j] = cos(8 * x) + cos(6 * x) - cos(4 * x) + cos(2 * x) - - cos(x) + sin(8 * y) - sin(6 * y) + sin(4 * y) - - sin(2 * y) + sin(y); + m_T1[i][j] = cos(8 * x) + cos(6 * x) - cos(4 * x) + cos(2 * x) - cos(x) + + sin(8 * y) - sin(6 * y) + sin(4 * y) - sin(2 * y) + sin(y); } } } @@ -154,8 +152,8 @@ void HeatTransfer::exchange(MPI_Comm comm) { // std::cout << "Rank " << m_s.rank << " receive from right from rank " // << m_s.rank_right << std::endl; - MPI_Recv(m_TCurrent[0] + (m_s.ndy + 1), 1, tColumnVector, - m_s.rank_right, tag, comm, &status); + MPI_Recv(m_TCurrent[0] + (m_s.ndy + 1), 1, tColumnVector, m_s.rank_right, tag, comm, + &status); } // send to right + receive from left @@ -164,15 +162,13 @@ void HeatTransfer::exchange(MPI_Comm comm) { // std::cout << "Rank " << m_s.rank << " send right to rank " // << m_s.rank_right << std::endl; - MPI_Send(m_TCurrent[0] + m_s.ndy, 1, tColumnVector, m_s.rank_right, tag, - comm); + MPI_Send(m_TCurrent[0] + m_s.ndy, 1, tColumnVector, m_s.rank_right, tag, comm); } if (m_s.rank_left >= 0) { // std::cout << "Rank " << m_s.rank << " receive from left from rank " // << m_s.rank_left << std::endl; - MPI_Recv(m_TCurrent[0], 1, tColumnVector, m_s.rank_left, tag, comm, - &status); + MPI_Recv(m_TCurrent[0], 1, tColumnVector, m_s.rank_left, tag, comm, &status); } // Cleanup the custom column vector type @@ -184,15 +180,13 @@ void HeatTransfer::exchange(MPI_Comm comm) { // std::cout << "Rank " << m_s.rank << " send down to rank " // << m_s.rank_down << std::endl; - MPI_Send(m_TCurrent[m_s.ndx], m_s.ndy + 2, MPI_DOUBLE, m_s.rank_down, - tag, comm); + MPI_Send(m_TCurrent[m_s.ndx], m_s.ndy + 2, MPI_DOUBLE, m_s.rank_down, tag, comm); } if (m_s.rank_up >= 0) { // std::cout << "Rank " << m_s.rank << " receive from above from rank " // << m_s.rank_up << std::endl; - MPI_Recv(m_TCurrent[0], m_s.ndy + 2, MPI_DOUBLE, m_s.rank_up, tag, comm, - &status); + MPI_Recv(m_TCurrent[0], m_s.ndy + 2, MPI_DOUBLE, m_s.rank_up, tag, comm, &status); } // send up + receive from below @@ -202,15 +196,14 @@ void HeatTransfer::exchange(MPI_Comm comm) // std::cout << "Rank " << m_s.rank << " send up to rank " << // m_s.rank_up // << std::endl; - MPI_Send(m_TCurrent[1], m_s.ndy + 2, MPI_DOUBLE, m_s.rank_up, tag, - comm); + MPI_Send(m_TCurrent[1], m_s.ndy + 2, MPI_DOUBLE, m_s.rank_up, tag, comm); } if (m_s.rank_down >= 0) { // std::cout << "Rank " << m_s.rank << " receive from below from rank " // << m_s.rank_down << std::endl; - MPI_Recv(m_TCurrent[m_s.ndx + 1], m_s.ndy + 2, MPI_DOUBLE, - m_s.rank_down, tag, comm, &status); + MPI_Recv(m_TCurrent[m_s.ndx + 1], m_s.ndy + 2, MPI_DOUBLE, m_s.rank_down, tag, comm, + &status); } } @@ -223,8 +216,7 @@ std::vector HeatTransfer::data_noghost() const std::vector d(m_s.ndx * m_s.ndy); for (unsigned int i = 1; i <= m_s.ndx; ++i) { - std::memcpy(&d[(i - 1) * m_s.ndy], m_TCurrent[i] + 1, - m_s.ndy * sizeof(double)); + std::memcpy(&d[(i - 1) * m_s.ndy], m_TCurrent[i] + 1, m_s.ndy * sizeof(double)); } return d; } diff --git a/examples/heatTransfer/write/HeatTransfer.h b/examples/heatTransfer/write/HeatTransfer.h index d504c8a966..a9e11f8b1d 100644 --- a/examples/heatTransfer/write/HeatTransfer.h +++ b/examples/heatTransfer/write/HeatTransfer.h @@ -45,8 +45,7 @@ class HeatTransfer const Settings &m_s; const double edgetemp = 3.0; // temperature at the edges of the global plate - const double omega = - 0.8; // weight for current temp is (1-omega) in iteration + const double omega = 0.8; // weight for current temp is (1-omega) in iteration // 2D data arrays (ndx+2) * (ndy+2) size, including ghost cells std::unique_ptr m_T1Buf; diff --git a/examples/heatTransfer/write/IO.h b/examples/heatTransfer/write/IO.h index 55a4f31037..ed0b46a9bd 100644 --- a/examples/heatTransfer/write/IO.h +++ b/examples/heatTransfer/write/IO.h @@ -21,8 +21,7 @@ class IO public: IO(const Settings &s, MPI_Comm comm); ~IO(); - void write(int step, const HeatTransfer &ht, const Settings &s, - MPI_Comm comm); + void write(int step, const HeatTransfer &ht, const Settings &s, MPI_Comm comm); private: std::string m_outputfilename; @@ -31,9 +30,8 @@ class IO // default is add suffix if not already there // if rank and step is specified, it will create a unique file name for that // rank and step - std::string MakeFilename(const std::string &outputfile, - const std::string &suffix, int rank = -1, - int step = -1) + std::string MakeFilename(const std::string &outputfile, const std::string &suffix, + int rank = -1, int step = -1) { std::string name; const size_t ss = outputfile.size(); @@ -49,8 +47,7 @@ class IO } // otherwise check whether suffix is already there - if ((ss > suffix.size()) && - outputfile.find(suffix) != ss - suffix.size()) + if ((ss > suffix.size()) && outputfile.find(suffix) != ss - suffix.size()) { name += suffix; } @@ -59,8 +56,7 @@ class IO { // we need a unique name here name = outputfile; - if ((ss > suffix.size()) && - outputfile.find(suffix) == ss - suffix.size()) + if ((ss > suffix.size()) && outputfile.find(suffix) == ss - suffix.size()) { name = outputfile.substr(0, ss - suffix.size()); } diff --git a/examples/heatTransfer/write/IO_adios2.cpp b/examples/heatTransfer/write/IO_adios2.cpp index ef557b6983..b983f3a0bc 100644 --- a/examples/heatTransfer/write/IO_adios2.cpp +++ b/examples/heatTransfer/write/IO_adios2.cpp @@ -43,14 +43,13 @@ IO::IO(const Settings &s, MPI_Comm comm) } // define T as 2D global array - varT = bpio.DefineVariable( - "T", - // Global dimensions - {s.gndx, s.gndy}, - // starting offset of the local array in the global space - {s.offsx, s.offsy}, - // local size, could be defined later using SetSelection() - {s.ndx, s.ndy}); + varT = bpio.DefineVariable("T", + // Global dimensions + {s.gndx, s.gndy}, + // starting offset of the local array in the global space + {s.offsx, s.offsy}, + // local size, could be defined later using SetSelection() + {s.ndx, s.ndy}); if (bpio.EngineType() == "BP3") { @@ -66,8 +65,7 @@ IO::IO(const Settings &s, MPI_Comm comm) IO::~IO() { bpWriter.Close(); } -void IO::write(int step, const HeatTransfer &ht, const Settings &s, - MPI_Comm comm) +void IO::write(int step, const HeatTransfer &ht, const Settings &s, MPI_Comm comm) { // using PutDeferred() you promise the pointer to the data will be intact // until the end of the output step. diff --git a/examples/heatTransfer/write/IO_ascii.cpp b/examples/heatTransfer/write/IO_ascii.cpp index bbeeff5728..b2bdbbf5e7 100644 --- a/examples/heatTransfer/write/IO_ascii.cpp +++ b/examples/heatTransfer/write/IO_ascii.cpp @@ -41,17 +41,14 @@ IO::~IO() } } -void IO::write(int step, const HeatTransfer &ht, const Settings &s, - MPI_Comm comm) +void IO::write(int step, const HeatTransfer &ht, const Settings &s, MPI_Comm comm) { std::ostream out(buf); if (step == 0) { - out << "rank=" << s.rank << " size=" << s.ndx << "x" << s.ndy - << " offsets=" << s.offsx << ":" << s.offsy << " step=" << step - << std::endl; - out << " time row columns " << s.offsy << "..." - << s.offsy + s.ndy - 1 << std::endl; + out << "rank=" << s.rank << " size=" << s.ndx << "x" << s.ndy << " offsets=" << s.offsx + << ":" << s.offsy << " step=" << step << std::endl; + out << " time row columns " << s.offsy << "..." << s.offsy + s.ndy - 1 << std::endl; out << " "; for (unsigned int j = 1; j <= s.ndy; ++j) { diff --git a/examples/heatTransfer/write/IO_h5mixer.cpp b/examples/heatTransfer/write/IO_h5mixer.cpp index e559da687e..a7b4332a10 100644 --- a/examples/heatTransfer/write/IO_h5mixer.cpp +++ b/examples/heatTransfer/write/IO_h5mixer.cpp @@ -54,14 +54,13 @@ IO::IO(const Settings &s, MPI_Comm comm) h5io.DefineVariable("gndy"); // define T as 2D global array - varT = h5io.DefineVariable( - "T", - // Global dimensions - {s.gndx, s.gndy}, - // starting offset of the local array in the global space - {s.offsx, s.offsy}, - // local size, could be defined later using SetSelection() - {s.ndx, s.ndy}); + varT = h5io.DefineVariable("T", + // Global dimensions + {s.gndx, s.gndy}, + // starting offset of the local array in the global space + {s.offsx, s.offsy}, + // local size, could be defined later using SetSelection() + {s.ndx, s.ndy}); // add transform to variable // adios2::Transform tr = adios2::transform::BZIP2( ); @@ -72,8 +71,7 @@ IO::IO(const Settings &s, MPI_Comm comm) if (!h5mixerWriter) { - throw std::ios_base::failure( - "ERROR: failed to open ADIOS h5mixerWriter\n"); + throw std::ios_base::failure("ERROR: failed to open ADIOS h5mixerWriter\n"); } } @@ -83,8 +81,7 @@ IO::~IO() delete ad; } -void IO::write(int step, const HeatTransfer &ht, const Settings &s, - MPI_Comm comm) +void IO::write(int step, const HeatTransfer &ht, const Settings &s, MPI_Comm comm) { h5mixerWriter.BeginStep(); @@ -94,8 +91,7 @@ void IO::write(int step, const HeatTransfer &ht, const Settings &s, // Make a selection to describe the local dimensions of the variable we // write and its offsets in the global spaces. This could have been done in // adios.DefineVariable() - varT.SetSelection( - adios2::Box({s.offsx, s.offsy}, {s.ndx, s.ndy})); + varT.SetSelection(adios2::Box({s.offsx, s.offsy}, {s.ndx, s.ndy})); /* Select the area that we want to write from the data pointer we pass to the @@ -138,8 +134,7 @@ void IO::write(int step, const HeatTransfer &ht, const Settings &s, above. Default memspace is always the full selection. */ - adios2::SelectionBoundingBox memspace = - adios2::SelectionBoundingBox({1, 1}, {s.ndx, s.ndy}); + adios2::SelectionBoundingBox memspace = adios2::SelectionBoundingBox({1, 1}, {s.ndx, s.ndy}); varT->SetMemorySelection(memspace); h5mixerWriter->Write(*varGndx, s.gndx); diff --git a/examples/heatTransfer/write/IO_hdf5_a.cpp b/examples/heatTransfer/write/IO_hdf5_a.cpp index 2101a54bd2..0ebedb1ef0 100644 --- a/examples/heatTransfer/write/IO_hdf5_a.cpp +++ b/examples/heatTransfer/write/IO_hdf5_a.cpp @@ -24,8 +24,7 @@ IO::IO(const Settings &s, MPI_Comm comm) : m_outputfilename{s.outputfile} {} IO::~IO() {} -void IO::write(int step, const HeatTransfer &ht, const Settings &s, - MPI_Comm comm) +void IO::write(int step, const HeatTransfer &ht, const Settings &s, MPI_Comm comm) { m_outputfilename = MakeFilename(s.outputfile, ".h5", s.rank, step); @@ -33,17 +32,14 @@ void IO::write(int step, const HeatTransfer &ht, const Settings &s, MPI_Barrier(comm); double time_start = MPI_Wtime(); - hsize_t dims[2] = {static_cast(s.ndx), - static_cast(s.ndy)}; + hsize_t dims[2] = {static_cast(s.ndx), static_cast(s.ndy)}; hid_t space = H5Screate_simple(2, dims, NULL); - hid_t file = H5Fcreate(m_outputfilename.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, - H5P_DEFAULT); - hid_t dset = H5Dcreate(file, "T", H5T_NATIVE_DOUBLE, space, H5P_DEFAULT, - H5P_DEFAULT, H5P_DEFAULT); + hid_t file = H5Fcreate(m_outputfilename.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, H5P_DEFAULT); + hid_t dset = + H5Dcreate(file, "T", H5T_NATIVE_DOUBLE, space, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - H5Dwrite(dset, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, - ht.data_noghost().data()); + H5Dwrite(dset, H5T_NATIVE_DOUBLE, H5S_ALL, H5S_ALL, H5P_DEFAULT, ht.data_noghost().data()); H5Dclose(dset); H5Sclose(space); @@ -51,12 +47,10 @@ void IO::write(int step, const HeatTransfer &ht, const Settings &s, MPI_Barrier(comm); double total_time = MPI_Wtime() - time_start; - uint64_t adios_totalsize = - 2 * sizeof(int) + 2 * s.ndx * s.ndy * sizeof(double); - uint64_t sizeMB = - adios_totalsize * s.nproc / 1024 / 1024 / 1024; // size in MB + uint64_t adios_totalsize = 2 * sizeof(int) + 2 * s.ndx * s.ndy * sizeof(double); + uint64_t sizeMB = adios_totalsize * s.nproc / 1024 / 1024 / 1024; // size in MB uint64_t mbs = sizeMB / total_time; if (s.rank == 0) - std::cout << "Step " << step << ": " << m_outputfilename << " " - << sizeMB << " " << total_time << "" << mbs << std::endl; + std::cout << "Step " << step << ": " << m_outputfilename << " " << sizeMB << " " + << total_time << "" << mbs << std::endl; } diff --git a/examples/heatTransfer/write/IO_ph5.cpp b/examples/heatTransfer/write/IO_ph5.cpp index 6a013d25c3..a7af682fa7 100644 --- a/examples/heatTransfer/write/IO_ph5.cpp +++ b/examples/heatTransfer/write/IO_ph5.cpp @@ -28,16 +28,13 @@ class HDF5NativeWriter void Close(); void CheckWriteGroup(); - void WriteScalar(const std::string &varName, const void *data, - hid_t h5Type); - void WriteSimple(const std::string &varName, int dimSize, const void *data, - hid_t h5Type, const hsize_t *shape, const hsize_t *offset, - const hsize_t *count); + void WriteScalar(const std::string &varName, const void *data, hid_t h5Type); + void WriteSimple(const std::string &varName, int dimSize, const void *data, hid_t h5Type, + const hsize_t *shape, const hsize_t *offset, const hsize_t *count); void applyMetadataCacheEviction(); - void WriteSimpleWithChunking(const std::string &varName, int dimSize, - const void *data, hid_t h5Type, - const hsize_t *shape, const hsize_t *offset, + void WriteSimpleWithChunking(const std::string &varName, int dimSize, const void *data, + hid_t h5Type, const hsize_t *shape, const hsize_t *offset, const hsize_t *count); int m_CurrentTimeStep; unsigned int m_TotalTimeSteps; @@ -57,8 +54,7 @@ HDF5NativeWriter::HDF5NativeWriter(const std::string &fileName) // read a file collectively H5Pset_fapl_mpio(m_FilePropertyListId, MPI_COMM_WORLD, MPI_INFO_NULL); - m_FileId = H5Fcreate(fileName.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, - m_FilePropertyListId); + m_FileId = H5Fcreate(fileName.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, m_FilePropertyListId); if (m_FileId < 0) { @@ -69,8 +65,7 @@ HDF5NativeWriter::HDF5NativeWriter(const std::string &fileName) std::string ts0 = "/Step0"; - m_GroupId = H5Gcreate2(m_FileId, ts0.c_str(), H5P_DEFAULT, H5P_DEFAULT, - H5P_DEFAULT); + m_GroupId = H5Gcreate2(m_FileId, ts0.c_str(), H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (m_GroupId < 0) { throw std::runtime_error("HDF5: Unable to create group " + ts0); @@ -110,8 +105,7 @@ void HDF5NativeWriter::Close() return; hid_t s = H5Screate(H5S_SCALAR); - hid_t attr = H5Acreate(m_FileId, "NumSteps", H5T_NATIVE_UINT, s, - H5P_DEFAULT, H5P_DEFAULT); + hid_t attr = H5Acreate(m_FileId, "NumSteps", H5T_NATIVE_UINT, s, H5P_DEFAULT, H5P_DEFAULT); unsigned int totalTimeSteps = m_CurrentTimeStep + 1; if (m_GroupId < 0) @@ -154,23 +148,20 @@ void HDF5NativeWriter::CheckWriteGroup() } std::string timeStepName = "/Step" + std::to_string(m_CurrentTimeStep); - m_GroupId = H5Gcreate2(m_FileId, timeStepName.c_str(), H5P_DEFAULT, - H5P_DEFAULT, H5P_DEFAULT); + m_GroupId = H5Gcreate2(m_FileId, timeStepName.c_str(), H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (m_GroupId < 0) { - throw std::runtime_error("HDF5: Unable to create group " + - timeStepName); + throw std::runtime_error("HDF5: Unable to create group " + timeStepName); } } -void HDF5NativeWriter::WriteScalar(const std::string &varName, const void *data, - hid_t h5Type) +void HDF5NativeWriter::WriteScalar(const std::string &varName, const void *data, hid_t h5Type) { CheckWriteGroup(); // scalar hid_t filespaceID = H5Screate(H5S_SCALAR); - hid_t dsetID = H5Dcreate(m_GroupId, varName.c_str(), h5Type, filespaceID, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + hid_t dsetID = H5Dcreate(m_GroupId, varName.c_str(), h5Type, filespaceID, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); hid_t plistID = H5Pcreate(H5P_DATASET_XFER); H5Pset_dxpl_mpio(plistID, H5FD_MPIO_COLLECTIVE); @@ -184,16 +175,15 @@ void HDF5NativeWriter::WriteScalar(const std::string &varName, const void *data, H5Dclose(dsetID); } -void HDF5NativeWriter::WriteSimple(const std::string &varName, int dimSize, - const void *data, hid_t h5Type, - const hsize_t *shape, const hsize_t *offset, +void HDF5NativeWriter::WriteSimple(const std::string &varName, int dimSize, const void *data, + hid_t h5Type, const hsize_t *shape, const hsize_t *offset, const hsize_t *count) { CheckWriteGroup(); hid_t fileSpace = H5Screate_simple(dimSize, shape, NULL); - hid_t dsetID = H5Dcreate(m_GroupId, varName.c_str(), h5Type, fileSpace, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + hid_t dsetID = H5Dcreate(m_GroupId, varName.c_str(), h5Type, fileSpace, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); hid_t memSpace = H5Screate_simple(dimSize, count, NULL); @@ -222,9 +212,9 @@ void HDF5NativeWriter::WriteSimple(const std::string &varName, int dimSize, H5Pclose(plistID); } -void HDF5NativeWriter::WriteSimpleWithChunking( - const std::string &varName, int dimSize, const void *data, hid_t h5Type, - const hsize_t *shape, const hsize_t *offset, const hsize_t *count) +void HDF5NativeWriter::WriteSimpleWithChunking(const std::string &varName, int dimSize, + const void *data, hid_t h5Type, const hsize_t *shape, + const hsize_t *offset, const hsize_t *count) { CheckWriteGroup(); hid_t fileSpace = H5Screate_simple(dimSize, shape, NULL); @@ -240,8 +230,8 @@ void HDF5NativeWriter::WriteSimpleWithChunking( hid_t access_plistid = H5Pcreate(H5P_DATASET_ACCESS); H5Pset_chunk_cache(access_plistid, 101, bytes, 1); - hid_t dsetID = H5Dcreate(m_GroupId, varName.c_str(), h5Type, fileSpace, - H5P_DEFAULT, dsetPid, access_plistid); + hid_t dsetID = H5Dcreate(m_GroupId, varName.c_str(), h5Type, fileSpace, H5P_DEFAULT, dsetPid, + access_plistid); hid_t memSpace = H5Screate_simple(dimSize, count, NULL); @@ -303,8 +293,7 @@ IO::~IO() // delete h5writer; } -void IO::write(int step, const HeatTransfer &ht, const Settings &s, - MPI_Comm comm) +void IO::write(int step, const HeatTransfer &ht, const Settings &s, MPI_Comm comm) { if (h5writer == nullptr) { @@ -316,15 +305,13 @@ void IO::write(int step, const HeatTransfer &ht, const Settings &s, if (h5writer->m_Chunking) { - h5writer->WriteSimpleWithChunking("T", 2, ht.data_noghost().data(), - H5T_NATIVE_DOUBLE, dims.data(), - offset.data(), count.data()); + h5writer->WriteSimpleWithChunking("T", 2, ht.data_noghost().data(), H5T_NATIVE_DOUBLE, + dims.data(), offset.data(), count.data()); } else { - h5writer->WriteSimple("T", 2, ht.data_noghost().data(), - H5T_NATIVE_DOUBLE, dims.data(), offset.data(), - count.data()); + h5writer->WriteSimple("T", 2, ht.data_noghost().data(), H5T_NATIVE_DOUBLE, dims.data(), + offset.data(), count.data()); } h5writer->WriteScalar("gndy", &(s.gndy), H5T_NATIVE_UINT); diff --git a/examples/heatTransfer/write/Settings.cpp b/examples/heatTransfer/write/Settings.cpp index a0e252ae60..40d178b725 100644 --- a/examples/heatTransfer/write/Settings.cpp +++ b/examples/heatTransfer/write/Settings.cpp @@ -22,13 +22,12 @@ static unsigned int convertToUint(std::string varName, char *arg) long retval = std::strtol(arg, &end, 10); if (end[0] || errno == ERANGE) { - throw std::invalid_argument("Invalid value given for " + varName + - ": " + std::string(arg)); + throw std::invalid_argument("Invalid value given for " + varName + ": " + std::string(arg)); } if (retval < 0) { - throw std::invalid_argument("Negative value given for " + varName + - ": " + std::string(arg)); + throw std::invalid_argument("Negative value given for " + varName + ": " + + std::string(arg)); } return static_cast(retval); } diff --git a/examples/hello/bpAttributeWriter/helloBPAttributeWriter.cpp b/examples/hello/bpAttributeWriter/helloBPAttributeWriter.cpp index 5bcd521adf..dce3946fa1 100644 --- a/examples/hello/bpAttributeWriter/helloBPAttributeWriter.cpp +++ b/examples/hello/bpAttributeWriter/helloBPAttributeWriter.cpp @@ -46,21 +46,17 @@ int main(int argc, char *argv[]) adios2::Variable bpFloats = bpIO.DefineVariable( "bpFloats", {size * Nx}, {rank * Nx}, {Nx}, adios2::ConstantDims); - bpIO.DefineAttribute("Single_String", - "File generated with ADIOS2"); + bpIO.DefineAttribute("Single_String", "File generated with ADIOS2"); std::vector myStrings = {"one", "two", "three"}; - bpIO.DefineAttribute("Array_of_Strings", myStrings.data(), - myStrings.size()); + bpIO.DefineAttribute("Array_of_Strings", myStrings.data(), myStrings.size()); bpIO.DefineAttribute("Attr_Double", 0.f); std::vector myDoubles = {1, 2, 3, 4, 5, 6, 7, 8, 9, 10}; - bpIO.DefineAttribute("Array_of_Doubles", myDoubles.data(), - myDoubles.size()); + bpIO.DefineAttribute("Array_of_Doubles", myDoubles.data(), myDoubles.size()); /** Engine derived class, spawned to start IO operations */ - adios2::Engine bpWriter = - bpIO.Open("fileAttributes.bp", adios2::Mode::Write); + adios2::Engine bpWriter = bpIO.Open("fileAttributes.bp", adios2::Mode::Write); /** Write variable for buffering */ bpWriter.Put(bpFloats, myFloats.data()); @@ -70,8 +66,7 @@ int main(int argc, char *argv[]) adios2::IO bpReader = adios.DeclareIO("BPReader"); - adios2::Engine bpReaderEngine = - bpReader.Open("fileAttributes.bp", adios2::Mode::Read); + adios2::Engine bpReaderEngine = bpReader.Open("fileAttributes.bp", adios2::Mode::Read); const auto attributesInfo = bpReader.AvailableAttributes(); @@ -80,8 +75,8 @@ int main(int argc, char *argv[]) std::cout << "Attribute: " << attributeInfoPair.first; for (const auto &attributePair : attributeInfoPair.second) { - std::cout << "\tKey: " << attributePair.first - << "\tValue: " << attributePair.second << "\n"; + std::cout << "\tKey: " << attributePair.first << "\tValue: " << attributePair.second + << "\n"; } std::cout << "\n"; } @@ -90,15 +85,13 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) { - std::cout - << "IO System base failure exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "IO System base failure exception, STOPPING PROGRAM from rank " << rank + << "\n"; std::cout << e.what() << "\n"; } catch (std::exception &e) diff --git a/examples/hello/bpAttributeWriter/helloBPAttributeWriter_nompi.cpp b/examples/hello/bpAttributeWriter/helloBPAttributeWriter_nompi.cpp index 2daaaf1490..9b9fedd9ab 100644 --- a/examples/hello/bpAttributeWriter/helloBPAttributeWriter_nompi.cpp +++ b/examples/hello/bpAttributeWriter/helloBPAttributeWriter_nompi.cpp @@ -33,20 +33,17 @@ int main(int argc, char *argv[]) /** global array: name, { shape (total dimensions) }, { start (local) }, * { count (local) }, all are constant dimensions */ - adios2::Variable bpFloats = bpIO.DefineVariable( - "bpFloats", {}, {}, {Nx}, adios2::ConstantDims); + adios2::Variable bpFloats = + bpIO.DefineVariable("bpFloats", {}, {}, {Nx}, adios2::ConstantDims); - bpIO.DefineAttribute("Single_String", - "File generated with ADIOS2"); + bpIO.DefineAttribute("Single_String", "File generated with ADIOS2"); std::vector myStrings = {"one", "two", "three"}; - bpIO.DefineAttribute("Array_of_Strings", myStrings.data(), - myStrings.size()); + bpIO.DefineAttribute("Array_of_Strings", myStrings.data(), myStrings.size()); bpIO.DefineAttribute("Attr_Double", 0.f); std::vector myDoubles = {1, 2, 3, 4, 5, 6, 7, 8, 9, 10}; - bpIO.DefineAttribute("Array_of_Doubles", myDoubles.data(), - myDoubles.size()); + bpIO.DefineAttribute("Array_of_Doubles", myDoubles.data(), myDoubles.size()); /** Engine derived class, spawned to start IO operations */ adios2::Engine bpWriter = bpIO.Open("myVector.bp", adios2::Mode::Write); diff --git a/examples/hello/bpFWriteCRead/CppReader.cpp b/examples/hello/bpFWriteCRead/CppReader.cpp index b9ae5b64ef..6e4ff552ad 100644 --- a/examples/hello/bpFWriteCRead/CppReader.cpp +++ b/examples/hello/bpFWriteCRead/CppReader.cpp @@ -35,8 +35,7 @@ int main(int argc, char *argv[]) /** Engine derived class, spawned to start IO operations */ adios2::Engine bpReader = bpIO.Open("FWriter.bp", adios2::Mode::Read); - const std::map variables = - bpIO.AvailableVariables(); + const std::map variables = bpIO.AvailableVariables(); for (const auto &variablePair : variables) { @@ -44,8 +43,7 @@ int main(int argc, char *argv[]) for (const auto ¶meter : variablePair.second) { - std::cout << "\t" << parameter.first << ": " << parameter.second - << "\n"; + std::cout << "\t" << parameter.first << ": " << parameter.second << "\n"; } } diff --git a/examples/hello/bpFWriteCRead/CppWriter.cpp b/examples/hello/bpFWriteCRead/CppWriter.cpp index 6b14659f77..5e93990736 100644 --- a/examples/hello/bpFWriteCRead/CppWriter.cpp +++ b/examples/hello/bpFWriteCRead/CppWriter.cpp @@ -38,9 +38,8 @@ int main(int argc, char *argv[]) adios2::ADIOS adios(MPI_COMM_WORLD); adios2::IO io = adios.DeclareIO("CppWriter"); - adios2::Variable bpFloats = - io.DefineVariable("data2D", {size * nx, ny}, {rank * nx, 0}, - {nx, ny}, adios2::ConstantDims); + adios2::Variable bpFloats = io.DefineVariable( + "data2D", {size * nx, ny}, {rank * nx, 0}, {nx, ny}, adios2::ConstantDims); adios2::Engine engine = io.Open("CppWriter.bp", adios2::Mode::Write); engine.Put(bpFloats, data.data()); diff --git a/examples/hello/bpFlushWriter/helloBPFlushWriter.cpp b/examples/hello/bpFlushWriter/helloBPFlushWriter.cpp index 8e662668a8..bcdfc441f9 100644 --- a/examples/hello/bpFlushWriter/helloBPFlushWriter.cpp +++ b/examples/hello/bpFlushWriter/helloBPFlushWriter.cpp @@ -53,8 +53,7 @@ int main(int argc, char *argv[]) "bpFloats", {size * Nx}, {rank * Nx}, {Nx}, adios2::ConstantDims); /** Engine derived class, spawned to start IO operations */ - adios2::Engine bpWriter = - bpIO.Open("myVectorFlush.bp", adios2::Mode::Write); + adios2::Engine bpWriter = bpIO.Open("myVectorFlush.bp", adios2::Mode::Write); for (unsigned int t = 0; t < 100; ++t) { @@ -69,15 +68,13 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) { - std::cout - << "IO System base failure exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "IO System base failure exception, STOPPING PROGRAM from rank " << rank + << "\n"; std::cout << e.what() << "\n"; } catch (std::exception &e) diff --git a/examples/hello/bpFlushWriter/helloBPFlushWriter_nompi.cpp b/examples/hello/bpFlushWriter/helloBPFlushWriter_nompi.cpp index 83812f1f91..edd92663ac 100644 --- a/examples/hello/bpFlushWriter/helloBPFlushWriter_nompi.cpp +++ b/examples/hello/bpFlushWriter/helloBPFlushWriter_nompi.cpp @@ -32,8 +32,8 @@ int main(int argc, char *argv[]) /** global array: name, { shape (total dimensions) }, { start (local) }, * { count (local) }, all are constant dimensions */ - adios2::Variable bpFloats = bpIO.DefineVariable( - "bpFloats", {}, {}, {Nx}, adios2::ConstantDims); + adios2::Variable bpFloats = + bpIO.DefineVariable("bpFloats", {}, {}, {Nx}, adios2::ConstantDims); /** Engine derived class, spawned to start IO operations */ adios2::Engine bpWriter = bpIO.Open("myVector.bp", adios2::Mode::Write); diff --git a/examples/hello/bpReader/helloBPReader.cpp b/examples/hello/bpReader/helloBPReader.cpp index c786b1df2f..9da7f3c83e 100644 --- a/examples/hello/bpReader/helloBPReader.cpp +++ b/examples/hello/bpReader/helloBPReader.cpp @@ -41,8 +41,7 @@ int main(int argc, char *argv[]) /** Engine derived class, spawned to start IO operations */ adios2::Engine bpReader = bpIO.Open(filename, adios2::Mode::Read); - const std::map variables = - bpIO.AvailableVariables(); + const std::map variables = bpIO.AvailableVariables(); for (const auto &variablePair : variables) { @@ -50,14 +49,12 @@ int main(int argc, char *argv[]) for (const auto ¶meter : variablePair.second) { - std::cout << "\t" << parameter.first << ": " << parameter.second - << "\n"; + std::cout << "\t" << parameter.first << ": " << parameter.second << "\n"; } } /** Write variable for buffering */ - adios2::Variable bpFloats = - bpIO.InquireVariable("bpFloats"); + adios2::Variable bpFloats = bpIO.InquireVariable("bpFloats"); adios2::Variable bpInts = bpIO.InquireVariable("bpInts"); const std::size_t Nx = 10; @@ -107,9 +104,7 @@ int main(int argc, char *argv[]) { if (rank == 0) { - std::cerr - << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cerr << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cerr << e.what() << "\n"; } MPI_Abort(MPI_COMM_WORLD, 1); @@ -133,8 +128,7 @@ int main(int argc, char *argv[]) { if (rank == 0) { - std::cerr << "Exception, STOPPING PROGRAM from rank " << rank - << "\n"; + std::cerr << "Exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cerr << e.what() << "\n"; } MPI_Abort(MPI_COMM_WORLD, 1); diff --git a/examples/hello/bpReader/helloBPReaderHeatMap2D.cpp b/examples/hello/bpReader/helloBPReaderHeatMap2D.cpp index 0eacb2f641..184d5730c2 100644 --- a/examples/hello/bpReader/helloBPReaderHeatMap2D.cpp +++ b/examples/hello/bpReader/helloBPReaderHeatMap2D.cpp @@ -54,8 +54,7 @@ int main(int argc, char *argv[]) for (unsigned int j = 0; j < Ny; ++j) { - const unsigned int value = - static_cast(iGlobal * shape[1] + j); + const unsigned int value = static_cast(iGlobal * shape[1] + j); temperatures[i * Ny + j] = value; } } @@ -70,13 +69,11 @@ int main(int argc, char *argv[]) * Parameters, Transports, and Execution: Engines */ adios2::IO putHeatMap = adios.DeclareIO("HeatMapWriter"); - adios2::Variable outTemperature = - putHeatMap.DefineVariable( - "temperature", shape, start, count, adios2::ConstantDims); + adios2::Variable outTemperature = putHeatMap.DefineVariable( + "temperature", shape, start, count, adios2::ConstantDims); /** Will create HeatMap.bp */ - adios2::Engine bpWriter = - putHeatMap.Open("HeatMap2D.bp", adios2::Mode::Write); + adios2::Engine bpWriter = putHeatMap.Open("HeatMap2D.bp", adios2::Mode::Write); bpWriter.Put(outTemperature, temperatures.data()); bpWriter.Close(); @@ -85,8 +82,8 @@ int main(int argc, char *argv[]) if (rank == 0) { adios2::IO getHeatMap = adios.DeclareIO("HeatMapReader"); - adios2::Engine bpReader = getHeatMap.Open( - "HeatMap2D.bp", adios2::Mode::Read, MPI_COMM_SELF); + adios2::Engine bpReader = + getHeatMap.Open("HeatMap2D.bp", adios2::Mode::Read, MPI_COMM_SELF); // this just discovers in the metadata file that the variable exists adios2::Variable inTemperature = @@ -100,8 +97,7 @@ int main(int argc, char *argv[]) std::cout << "Pre-allocated " << elementsSize << " elements, " << elementsSize * sizeof(unsigned int) << " bytes\n"; - bpReader.Get(inTemperature, inTemperatures.data(), - adios2::Mode::Sync); + bpReader.Get(inTemperature, inTemperatures.data(), adios2::Mode::Sync); std::cout << "Incoming temperature map:\n"; @@ -121,8 +117,7 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) diff --git a/examples/hello/bpReader/helloBPReaderHeatMap3D.cpp b/examples/hello/bpReader/helloBPReaderHeatMap3D.cpp index 40d57dad9b..e0bbd331e5 100644 --- a/examples/hello/bpReader/helloBPReaderHeatMap3D.cpp +++ b/examples/hello/bpReader/helloBPReaderHeatMap3D.cpp @@ -61,11 +61,10 @@ int main(int argc, char *argv[]) { for (unsigned int k = 0; k < count[2]; ++k) { - const unsigned int value = static_cast( - iGlobal * shape[1] * shape[2] + j * shape[2] + k); + const unsigned int value = + static_cast(iGlobal * shape[1] * shape[2] + j * shape[2] + k); - const std::size_t linearIndex = - i * count[1] * count[2] + j * count[2] + k; + const std::size_t linearIndex = i * count[1] * count[2] + j * count[2] + k; temperatures[linearIndex] = value; } @@ -82,13 +81,11 @@ int main(int argc, char *argv[]) * Parameters, Transports, and Execution: Engines */ adios2::IO putHeatMap = adios.DeclareIO("HeatMapWrite"); - adios2::Variable outTemperature = - putHeatMap.DefineVariable( - "temperature", shape, start, count, adios2::ConstantDims); + adios2::Variable outTemperature = putHeatMap.DefineVariable( + "temperature", shape, start, count, adios2::ConstantDims); /** Will create HeatMap3D.bp */ - adios2::Engine bpWriter = - putHeatMap.Open("HeatMap3D.bp", adios2::Mode::Write); + adios2::Engine bpWriter = putHeatMap.Open("HeatMap3D.bp", adios2::Mode::Write); bpWriter.Put(outTemperature, temperatures.data()); bpWriter.Close(); @@ -97,8 +94,8 @@ int main(int argc, char *argv[]) if (rank == 0) { adios2::IO getHeatMap = adios.DeclareIO("HeatMapRead"); - adios2::Engine bpReader = getHeatMap.Open( - "HeatMap3D.bp", adios2::Mode::Read, MPI_COMM_SELF); + adios2::Engine bpReader = + getHeatMap.Open("HeatMap3D.bp", adios2::Mode::Read, MPI_COMM_SELF); // this just discovers in the metadata file that the variable exists adios2::Variable inTemperature = @@ -112,8 +109,7 @@ int main(int argc, char *argv[]) std::cout << "Pre-allocated " << elementsSize << " elements, " << elementsSize * sizeof(unsigned int) << " bytes\n"; - bpReader.Get(inTemperature, inTemperatures.data(), - adios2::Mode::Sync); + bpReader.Get(inTemperature, inTemperatures.data(), adios2::Mode::Sync); std::cout << "Temperature map selection: "; std::cout << "{ start = [2,2,2], count = [4,4,4] }\n"; @@ -134,8 +130,7 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) diff --git a/examples/hello/bpReader/helloBPReader_nompi.cpp b/examples/hello/bpReader/helloBPReader_nompi.cpp index f8161897d0..629fa2e1f9 100644 --- a/examples/hello/bpReader/helloBPReader_nompi.cpp +++ b/examples/hello/bpReader/helloBPReader_nompi.cpp @@ -32,8 +32,7 @@ int main(int argc, char *argv[]) /** Engine derived class, spawned to start IO operations */ adios2::Engine bpReader = bpIO.Open(filename, adios2::Mode::Read); - const std::map variables = - bpIO.AvailableVariables(true); + const std::map variables = bpIO.AvailableVariables(true); std::cout << "List of variables:"; for (const auto &variablePair : variables) @@ -43,8 +42,7 @@ int main(int argc, char *argv[]) std::cout << std::endl; /** Write variable for buffering */ - adios2::Variable bpFloats = - bpIO.InquireVariable("bpFloats"); + adios2::Variable bpFloats = bpIO.InquireVariable("bpFloats"); adios2::Variable bpInts = bpIO.InquireVariable("bpInts"); @@ -67,8 +65,7 @@ int main(int argc, char *argv[]) } else { - std::cout << "There are no integer datasets in " << filename - << ".\n"; + std::cout << "There are no integer datasets in " << filename << ".\n"; } /** Close bp file, engine becomes unreachable after this*/ diff --git a/examples/hello/bpTimeWriter/helloBPTimeWriter.cpp b/examples/hello/bpTimeWriter/helloBPTimeWriter.cpp index 3ca86093f7..eab24b40e9 100644 --- a/examples/hello/bpTimeWriter/helloBPTimeWriter.cpp +++ b/examples/hello/bpTimeWriter/helloBPTimeWriter.cpp @@ -51,8 +51,7 @@ int main(int argc, char *argv[]) const unsigned int variablesSize = 10; std::vector> bpFloats(variablesSize); - adios2::Variable bpString = - bpIO.DefineVariable("bpString"); + adios2::Variable bpString = bpIO.DefineVariable("bpString"); for (unsigned int v = 0; v < variablesSize; ++v) { @@ -67,9 +66,8 @@ int main(int argc, char *argv[]) } namev += std::to_string(v); - bpFloats[v] = - bpIO.DefineVariable(namev, {size * Nx}, {rank * Nx}, - {Nx}, adios2::ConstantDims); + bpFloats[v] = bpIO.DefineVariable(namev, {size * Nx}, {rank * Nx}, {Nx}, + adios2::ConstantDims); } /** global single value variable: name */ @@ -77,8 +75,7 @@ int main(int argc, char *argv[]) bpIO.DefineVariable("timeStep"); /** Engine derived class, spawned to start IO operations */ - adios2::Engine bpWriter = - bpIO.Open("myVector.bp", adios2::Mode::Write); + adios2::Engine bpWriter = bpIO.Open("myVector.bp", adios2::Mode::Write); for (unsigned int timeStep = 0; timeStep < 3; ++timeStep) { @@ -96,9 +93,8 @@ int main(int argc, char *argv[]) // and myFloats[0] == 9, 10, or 11 bpWriter.Put(bpFloats[v], myFloats.data()); } - const std::string myString( - "Hello from rank: " + std::to_string(rank) + - " and timestep: " + std::to_string(timeStep)); + const std::string myString("Hello from rank: " + std::to_string(rank) + + " and timestep: " + std::to_string(timeStep)); if (rank == 0) { @@ -118,11 +114,9 @@ int main(int argc, char *argv[]) // { adios2::IO ioReader = adios.DeclareIO("bpReader"); - adios2::Engine bpReader = - ioReader.Open("myVector.bp", adios2::Mode::Read); + adios2::Engine bpReader = ioReader.Open("myVector.bp", adios2::Mode::Read); - adios2::Variable bpFloats000 = - ioReader.InquireVariable("bpFloats000"); + adios2::Variable bpFloats000 = ioReader.InquireVariable("bpFloats000"); adios2::Variable bpString = ioReader.InquireVariable("bpString"); @@ -135,8 +129,8 @@ int main(int argc, char *argv[]) std::vector data(bpFloats000.SelectionSize()); bpReader.Get(bpFloats000, data.data(), adios2::Mode::Sync); - std::cout << "Data timestep " << bpFloats000.StepsStart() - << " from rank " << rank << ": "; + std::cout << "Data timestep " << bpFloats000.StepsStart() << " from rank " << rank + << ": "; for (const auto datum : data) { std::cout << datum << " "; @@ -162,8 +156,7 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) diff --git a/examples/hello/bpTimeWriter/helloBPTimeWriter_nompi.cpp b/examples/hello/bpTimeWriter/helloBPTimeWriter_nompi.cpp index cbefe40c24..9165189504 100644 --- a/examples/hello/bpTimeWriter/helloBPTimeWriter_nompi.cpp +++ b/examples/hello/bpTimeWriter/helloBPTimeWriter_nompi.cpp @@ -32,11 +32,10 @@ int main(int argc, char *argv[]) /** name, { shape (total dimensions) }, { start (local) }, { count * {local} } */ - adios2::Variable bpFloats = bpIO.DefineVariable( - "bpFloats", {}, {}, {Nx}, adios2::ConstantDims); + adios2::Variable bpFloats = + bpIO.DefineVariable("bpFloats", {}, {}, {Nx}, adios2::ConstantDims); - adios2::Variable bpTimeStep = - bpIO.DefineVariable("timeStep"); + adios2::Variable bpTimeStep = bpIO.DefineVariable("timeStep"); /** Engine derived class, spawned to start IO operations */ adios2::Engine bpWriter = bpIO.Open("myVector.bp", adios2::Mode::Write); diff --git a/examples/hello/bpWriter/helloBPPutDeferred.cpp b/examples/hello/bpWriter/helloBPPutDeferred.cpp index 9165919a00..209486496d 100644 --- a/examples/hello/bpWriter/helloBPPutDeferred.cpp +++ b/examples/hello/bpWriter/helloBPPutDeferred.cpp @@ -71,12 +71,11 @@ int main(int argc, char *argv[]) adios2::Variable bpFloats = bpIO.DefineVariable( "bpFloats", {size * Nx}, {rank * Nx}, {Nx}, adios2::ConstantDims); - adios2::Variable bpInts = bpIO.DefineVariable( - "bpInts", {size * Nx}, {rank * Nx}, {Nx}, adios2::ConstantDims); + adios2::Variable bpInts = bpIO.DefineVariable("bpInts", {size * Nx}, {rank * Nx}, + {Nx}, adios2::ConstantDims); /** Engine derived class, spawned to start IO operations */ - adios2::Engine bpFileWriter = - bpIO.Open("myVectorDeferred.bp", adios2::Mode::Write); + adios2::Engine bpFileWriter = bpIO.Open("myVectorDeferred.bp", adios2::Mode::Write); /** Put variables for buffering, template type is optional */ bpFileWriter.Put(bpFloats, myFloats.data()); diff --git a/examples/hello/bpWriter/helloBPSZ.cpp b/examples/hello/bpWriter/helloBPSZ.cpp index 1818c6d656..5678ecb12c 100644 --- a/examples/hello/bpWriter/helloBPSZ.cpp +++ b/examples/hello/bpWriter/helloBPSZ.cpp @@ -49,9 +49,8 @@ int main(int argc, char *argv[]) { if (argc != 3) { - throw std::invalid_argument( - "ERROR: need sz accuracy e.g. 0.01, 0.1 as " - "2nd parameter in argv\n"); + throw std::invalid_argument("ERROR: need sz accuracy e.g. 0.01, 0.1 as " + "2nd parameter in argv\n"); } const std::size_t Nx = static_cast(std::stoull(argv[1])); @@ -83,21 +82,17 @@ int main(int argc, char *argv[]) if (accuracy > 1E-16) { adios2::Operator op = adios.DefineOperator("SZCompressor", "sz"); - varFloats.AddOperation(op, - {{"accuracy", std::to_string(accuracy)}}); - varDoubles.AddOperation(op, - {{"accuracy", std::to_string(accuracy)}}); + varFloats.AddOperation(op, {{"accuracy", std::to_string(accuracy)}}); + varDoubles.AddOperation(op, {{"accuracy", std::to_string(accuracy)}}); } - adios2::Attribute attribute = - bpIO.DefineAttribute("SZ_accuracy", accuracy); + adios2::Attribute attribute = bpIO.DefineAttribute("SZ_accuracy", accuracy); // To avoid compiling warnings (void)attribute; /** Engine derived class, spawned to start IO operations */ - adios2::Engine bpFileWriter = - bpIO.Open("SZexample.bp", adios2::Mode::Write); + adios2::Engine bpFileWriter = bpIO.Open("SZexample.bp", adios2::Mode::Write); for (unsigned int t = 0; t < 3; ++t) { diff --git a/examples/hello/bpWriter/helloBPSubStreams.cpp b/examples/hello/bpWriter/helloBPSubStreams.cpp index 596e8f574a..54db43007d 100644 --- a/examples/hello/bpWriter/helloBPSubStreams.cpp +++ b/examples/hello/bpWriter/helloBPSubStreams.cpp @@ -38,8 +38,7 @@ int main(int argc, char *argv[]) std::vector myInts = {0, -1, -2, -3, -4, -5, -6, -7, -8, -9}; const std::size_t Nx = myFloats.size(); - const std::string myString("Hello Variable String from rank " + - std::to_string(rank)); + const std::string myString("Hello Variable String from rank " + std::to_string(rank)); try { @@ -68,14 +67,12 @@ int main(int argc, char *argv[]) // adios2::Variable &bpString = // bpIO.DefineVariable("bpString"); - adios2::Attribute attribute = - bpIO.DefineAttribute("attrINT", -1); + adios2::Attribute attribute = bpIO.DefineAttribute("attrINT", -1); (void)attribute; // For the sake of the example we create an unused // variable /** Engine derived class, spawned to start IO operations */ - adios2::Engine bpFileWriter = - bpIO.Open("myVector_cpp.bp", adios2::Mode::Write); + adios2::Engine bpFileWriter = bpIO.Open("myVector_cpp.bp", adios2::Mode::Write); for (unsigned int t = 0; t < 2; ++t) { diff --git a/examples/hello/bpWriter/helloBPWriter.c b/examples/hello/bpWriter/helloBPWriter.c index 715e0ed9a3..b88271347b 100644 --- a/examples/hello/bpWriter/helloBPWriter.c +++ b/examples/hello/bpWriter/helloBPWriter.c @@ -83,9 +83,8 @@ int main(int argc, char *argv[]) size_t count[1]; count[0] = Nx; - adios2_variable *variable = - adios2_define_variable(io, "bpFloats", adios2_type_float, 1, shape, - start, count, adios2_constant_dims_true); + adios2_variable *variable = adios2_define_variable(io, "bpFloats", adios2_type_float, 1, shape, + start, count, adios2_constant_dims_true); check_handler(variable, "variable"); adios2_engine *engine = adios2_open(io, "myVector_c.bp", adios2_mode_write); diff --git a/examples/hello/bpWriter/helloBPWriter.cpp b/examples/hello/bpWriter/helloBPWriter.cpp index 39043656bd..5a80cdbeb4 100644 --- a/examples/hello/bpWriter/helloBPWriter.cpp +++ b/examples/hello/bpWriter/helloBPWriter.cpp @@ -39,8 +39,7 @@ int main(int argc, char *argv[]) std::vector myInts = {0, -1, -2, -3, -4, -5, -6, -7, -8, -9}; const std::size_t Nx = myFloats.size(); - const std::string myString("Hello Variable String from rank " + - std::to_string(rank)); + const std::string myString("Hello Variable String from rank " + std::to_string(rank)); try { @@ -61,11 +60,10 @@ int main(int argc, char *argv[]) adios2::Variable bpFloats = bpIO.DefineVariable( "bpFloats", {size * Nx}, {rank * Nx}, {Nx}, adios2::ConstantDims); - adios2::Variable bpInts = bpIO.DefineVariable( - "bpInts", {size * Nx}, {rank * Nx}, {Nx}, adios2::ConstantDims); + adios2::Variable bpInts = bpIO.DefineVariable("bpInts", {size * Nx}, {rank * Nx}, + {Nx}, adios2::ConstantDims); - adios2::Variable bpString = - bpIO.DefineVariable("bpString"); + adios2::Variable bpString = bpIO.DefineVariable("bpString"); (void)bpString; // For the sake of the example we create an unused // variable diff --git a/examples/hello/datamanReader/helloDataManReader.cpp b/examples/hello/datamanReader/helloDataManReader.cpp index cbf4716cd6..8313a9a56d 100644 --- a/examples/hello/datamanReader/helloDataManReader.cpp +++ b/examples/hello/datamanReader/helloDataManReader.cpp @@ -43,8 +43,7 @@ int main(int argc, char *argv[]) adios2::ADIOS adios(MPI_COMM_WORLD); adios2::IO io = adios.DeclareIO("whatever"); io.SetEngine("DataMan"); - io.SetParameters( - {{"IPAddress", "127.0.0.1"}, {"Port", "12306"}, {"Timeout", "5"}}); + io.SetParameters({{"IPAddress", "127.0.0.1"}, {"Port", "12306"}, {"Timeout", "5"}}); // open stream adios2::Engine engine = io.Open("HelloDataMan", adios2::Mode::Read); @@ -61,11 +60,10 @@ int main(int argc, char *argv[]) { floatArrayVar = io.InquireVariable("FloatArray"); auto shape = floatArrayVar.Shape(); - size_t datasize = std::accumulate(shape.begin(), shape.end(), 1, - std::multiplies()); + size_t datasize = + std::accumulate(shape.begin(), shape.end(), 1, std::multiplies()); floatVector.resize(datasize); - engine.Get(floatArrayVar, floatVector.data(), - adios2::Mode::Sync); + engine.Get(floatArrayVar, floatVector.data(), adios2::Mode::Sync); engine.EndStep(); PrintData(floatVector, engine.CurrentStep()); } diff --git a/examples/hello/datamanWriter/helloDataManWriter.cpp b/examples/hello/datamanWriter/helloDataManWriter.cpp index b5115601b0..bd29cb9c2b 100644 --- a/examples/hello/datamanWriter/helloDataManWriter.cpp +++ b/examples/hello/datamanWriter/helloDataManWriter.cpp @@ -38,8 +38,7 @@ void PrintData(std::vector &data, const size_t step) template std::vector GenerateData(const size_t step) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::vector myVec(datasize); for (size_t i = 0; i < datasize; ++i) { @@ -76,8 +75,7 @@ int main(int argc, char *argv[]) adios2::Engine engine = io.Open("HelloDataMan", adios2::Mode::Write); // define variable - auto floatArrayVar = - io.DefineVariable("FloatArray", shape, start, count); + auto floatArrayVar = io.DefineVariable("FloatArray", shape, start, count); // write data for (size_t i = 0; i < steps; ++i) diff --git a/examples/hello/dataspacesReader/helloDataSpacesReader.cpp b/examples/hello/dataspacesReader/helloDataSpacesReader.cpp index d2650f0c01..c2efd7ee1b 100644 --- a/examples/hello/dataspacesReader/helloDataSpacesReader.cpp +++ b/examples/hello/dataspacesReader/helloDataSpacesReader.cpp @@ -52,13 +52,10 @@ int main(int argc, char *argv[]) adios2::IO dataSpacesIO = adios.DeclareIO("myIO"); dataSpacesIO.SetEngine("DATASPACES"); - adios2::Engine dataSpacesReader = - dataSpacesIO.Open("helloDataSpaces", adios2::Mode::Read); + adios2::Engine dataSpacesReader = dataSpacesIO.Open("helloDataSpaces", adios2::Mode::Read); dataSpacesReader.BeginStep(); - adios2::Variable bpFloats = - dataSpacesIO.InquireVariable("bpFloats"); - std::cout << "Incoming variable is of size " << bpFloats.Shape()[0] - << "\n"; + adios2::Variable bpFloats = dataSpacesIO.InquireVariable("bpFloats"); + std::cout << "Incoming variable is of size " << bpFloats.Shape()[0] << "\n"; const std::size_t total_size = bpFloats.Shape()[0]; const std::size_t my_start = (total_size / size) * rank; const std::size_t my_count = (total_size / size); @@ -81,8 +78,7 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) diff --git a/examples/hello/dataspacesWriter/helloDataSpacesWriter.cpp b/examples/hello/dataspacesWriter/helloDataSpacesWriter.cpp index 888ab7016d..103578c716 100644 --- a/examples/hello/dataspacesWriter/helloDataSpacesWriter.cpp +++ b/examples/hello/dataspacesWriter/helloDataSpacesWriter.cpp @@ -36,11 +36,11 @@ int main(int argc, char *argv[]) size = 1; #endif - std::vector myFloats = { - (float)10.0 * rank + 0, (float)10.0 * rank + 1, (float)10.0 * rank + 2, - (float)10.0 * rank + 3, (float)10.0 * rank + 4, (float)10.0 * rank + 5, - (float)10.0 * rank + 6, (float)10.0 * rank + 7, (float)10.0 * rank + 8, - (float)10.0 * rank + 9}; + std::vector myFloats = {(float)10.0 * rank + 0, (float)10.0 * rank + 1, + (float)10.0 * rank + 2, (float)10.0 * rank + 3, + (float)10.0 * rank + 4, (float)10.0 * rank + 5, + (float)10.0 * rank + 6, (float)10.0 * rank + 7, + (float)10.0 * rank + 8, (float)10.0 * rank + 9}; const std::size_t Nx = myFloats.size(); try @@ -54,13 +54,12 @@ int main(int argc, char *argv[]) dataSpacesIO.SetEngine("DATASPACES"); // Define variable and local size - auto bpFloats = dataSpacesIO.DefineVariable( - "bpFloats", {size * Nx}, {rank * Nx}, {Nx}); + auto bpFloats = + dataSpacesIO.DefineVariable("bpFloats", {size * Nx}, {rank * Nx}, {Nx}); // Create engine smart pointer to Sst Engine due to polymorphism, // Open returns a smart pointer to Engine containing the Derived class - adios2::Engine dataSpacesWriter = - dataSpacesIO.Open("helloDataSpaces", adios2::Mode::Write); + adios2::Engine dataSpacesWriter = dataSpacesIO.Open("helloDataSpaces", adios2::Mode::Write); dataSpacesWriter.BeginStep(); dataSpacesWriter.Put(bpFloats, myFloats.data()); @@ -69,15 +68,13 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) { - std::cout - << "IO System base failure exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "IO System base failure exception, STOPPING PROGRAM from rank " << rank + << "\n"; std::cout << e.what() << "\n"; } catch (std::exception &e) diff --git a/examples/hello/hdf5Reader/helloHDF5Reader.cpp b/examples/hello/hdf5Reader/helloHDF5Reader.cpp index bc3b827f8d..d5ade54e72 100644 --- a/examples/hello/hdf5Reader/helloHDF5Reader.cpp +++ b/examples/hello/hdf5Reader/helloHDF5Reader.cpp @@ -17,8 +17,7 @@ #include template -void ReadData(adios2::IO h5IO, adios2::Engine &h5Reader, - const std::string &name) +void ReadData(adios2::IO h5IO, adios2::Engine &h5Reader, const std::string &name) { adios2::Variable var = h5IO.InquireVariable(name); @@ -100,8 +99,7 @@ int main(int argc, char *argv[]) /** Engine derived class, spawned to start IO operations */ adios2::Engine h5Reader = h5IO.Open(filename, adios2::Mode::Read); - const std::map variables = - h5IO.AvailableVariables(); + const std::map variables = h5IO.AvailableVariables(); for (const auto &variablePair : variables) { @@ -110,8 +108,7 @@ int main(int argc, char *argv[]) for (const auto ¶meter : variablePair.second) { - std::cout << "\t" << parameter.first << ": " << parameter.second - << "\n"; + std::cout << "\t" << parameter.first << ": " << parameter.second << "\n"; if (parameter.second == "double") { ReadData(h5IO, h5Reader, variablePair.first); @@ -132,8 +129,7 @@ int main(int argc, char *argv[]) } } - const std::map attributes = - h5IO.AvailableAttributes(); + const std::map attributes = h5IO.AvailableAttributes(); for (const auto &attrPair : attributes) { @@ -142,8 +138,7 @@ int main(int argc, char *argv[]) for (const auto ¶meter : attrPair.second) { - std::cout << "\t" << parameter.first << ": " << parameter.second - << "\n"; + std::cout << "\t" << parameter.first << ": " << parameter.second << "\n"; if (parameter.second == "double") { // ReadData(h5IO, h5Reader, variablePair.first); @@ -169,8 +164,7 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) diff --git a/examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp b/examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp index 9aab7f8b5f..120c12ebc5 100644 --- a/examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp +++ b/examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp @@ -90,8 +90,7 @@ int main(int argc, char *argv[]) /** Engine derived class, spawned to start IO operations */ adios2::Engine h5Reader = h5IO.Open(filename, adios2::Mode::Read); - const std::map variables = - h5IO.AvailableVariables(); + const std::map variables = h5IO.AvailableVariables(); for (const auto &variablePair : variables) { @@ -100,8 +99,7 @@ int main(int argc, char *argv[]) for (const auto ¶meter : variablePair.second) { - std::cout << "\t" << parameter.first << ": " << parameter.second - << "\n"; + std::cout << "\t" << parameter.first << ": " << parameter.second << "\n"; if (parameter.second == "double") { ReadData(h5IO, h5Reader, variablePair.first); diff --git a/examples/hello/hdf5Writer/helloHDF5Writer.cpp b/examples/hello/hdf5Writer/helloHDF5Writer.cpp index 1035195ccf..7b5e001533 100644 --- a/examples/hello/hdf5Writer/helloHDF5Writer.cpp +++ b/examples/hello/hdf5Writer/helloHDF5Writer.cpp @@ -53,11 +53,9 @@ int main(int argc, char *argv[]) adios2::Variable h5Ints = hdf5IO.DefineVariable( "h5Ints", {size * Nx}, {rank * Nx}, {Nx}, adios2::ConstantDims); - adios2::Variable h5ScalarDouble = - hdf5IO.DefineVariable("h5ScalarDouble"); + adios2::Variable h5ScalarDouble = hdf5IO.DefineVariable("h5ScalarDouble"); /** Engine derived class, spawned to start IO operations */ - adios2::Engine hdf5Writer = - hdf5IO.Open("myVector.h5", adios2::Mode::Write); + adios2::Engine hdf5Writer = hdf5IO.Open("myVector.h5", adios2::Mode::Write); #ifdef ALL_RANKS_WRITE // all Ranks must call Put /** Write variable for buffering */ @@ -78,22 +76,15 @@ int main(int argc, char *argv[]) hdf5Writer.EndStep(); #endif std::vector m_globalDims = {10, 20, 30, 40}; - hdf5IO.DefineAttribute( - "adios2_schema/version_major", - std::to_string(ADIOS2_VERSION_MAJOR)); - hdf5IO.DefineAttribute( - "adios2_schema/version_minor", - std::to_string(ADIOS2_VERSION_MINOR)); - hdf5IO.DefineAttribute("/adios2_schema/mesh/type", - "explicit"); - hdf5IO.DefineAttribute("adios2_schema/mesh/dimension0", - m_globalDims[0]); - hdf5IO.DefineAttribute("adios2_schema/mesh/dimension1", - m_globalDims[1]); - hdf5IO.DefineAttribute("adios2_schema/mesh/dimension2", - m_globalDims[2]); - hdf5IO.DefineAttribute("adios2_schema/mesh/dimension3", - m_globalDims[3]); + hdf5IO.DefineAttribute("adios2_schema/version_major", + std::to_string(ADIOS2_VERSION_MAJOR)); + hdf5IO.DefineAttribute("adios2_schema/version_minor", + std::to_string(ADIOS2_VERSION_MINOR)); + hdf5IO.DefineAttribute("/adios2_schema/mesh/type", "explicit"); + hdf5IO.DefineAttribute("adios2_schema/mesh/dimension0", m_globalDims[0]); + hdf5IO.DefineAttribute("adios2_schema/mesh/dimension1", m_globalDims[1]); + hdf5IO.DefineAttribute("adios2_schema/mesh/dimension2", m_globalDims[2]); + hdf5IO.DefineAttribute("adios2_schema/mesh/dimension3", m_globalDims[3]); hdf5IO.DefineAttribute("adios2_schema/mesh/dimension-num", m_globalDims.size()); @@ -101,15 +92,13 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) { - std::cout - << "IO System base failure exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "IO System base failure exception, STOPPING PROGRAM from rank " << rank + << "\n"; std::cout << e.what() << "\n"; } catch (std::exception &e) diff --git a/examples/hello/hdf5Writer/helloHDF5Writer_nompi.cpp b/examples/hello/hdf5Writer/helloHDF5Writer_nompi.cpp index e435648293..436cde2194 100644 --- a/examples/hello/hdf5Writer/helloHDF5Writer_nompi.cpp +++ b/examples/hello/hdf5Writer/helloHDF5Writer_nompi.cpp @@ -33,12 +33,11 @@ int main(int argc, char *argv[]) /** global array : name, { shape (total) }, { start (local) }, { count * (local) }, all are constant dimensions */ - adios2::Variable bpFloats = hdf5IO.DefineVariable( - "bpFloats", {}, {}, {Nx}, adios2::ConstantDims); + adios2::Variable bpFloats = + hdf5IO.DefineVariable("bpFloats", {}, {}, {Nx}, adios2::ConstantDims); /** Engine derived class, spawned to start IO operations */ - adios2::Engine hdf5Writer = - hdf5IO.Open("myVector.h5", adios2::Mode::Write); + adios2::Engine hdf5Writer = hdf5IO.Open("myVector.h5", adios2::Mode::Write); /** Write variable for buffering */ hdf5Writer.Put(bpFloats, myFloats.data()); diff --git a/examples/hello/inlineReaderWriter/helloInlineReaderWriter.cpp b/examples/hello/inlineReaderWriter/helloInlineReaderWriter.cpp index d77679a81d..3fe9674924 100644 --- a/examples/hello/inlineReaderWriter/helloInlineReaderWriter.cpp +++ b/examples/hello/inlineReaderWriter/helloInlineReaderWriter.cpp @@ -19,13 +19,11 @@ #include -void DoAnalysis(adios2::IO &inlineIO, adios2::Engine &inlineReader, int rank, - unsigned int step) +void DoAnalysis(adios2::IO &inlineIO, adios2::Engine &inlineReader, int rank, unsigned int step) { inlineReader.BeginStep(); /////////////////////READ - adios2::Variable inlineFloats000 = - inlineIO.InquireVariable("inlineFloats000"); + adios2::Variable inlineFloats000 = inlineIO.InquireVariable("inlineFloats000"); adios2::Variable inlineString = inlineIO.InquireVariable("inlineString"); @@ -34,8 +32,8 @@ void DoAnalysis(adios2::IO &inlineIO, adios2::Engine &inlineReader, int rank, { auto blocksInfo = inlineReader.BlocksInfo(inlineFloats000, step); - std::cout << "Data StepsStart " << inlineFloats000.StepsStart() - << " from rank " << rank << ": "; + std::cout << "Data StepsStart " << inlineFloats000.StepsStart() << " from rank " << rank + << ": "; for (auto &info : blocksInfo) { // bp file reader would see all blocks, inline only sees local @@ -46,8 +44,7 @@ void DoAnalysis(adios2::IO &inlineIO, adios2::Engine &inlineReader, int rank, // info passed by reference // engine must remember data pointer (or info) to fill it out at // PerformGets() - inlineReader.Get(inlineFloats000, info, - adios2::Mode::Deferred); + inlineReader.Get(inlineFloats000, info, adios2::Mode::Deferred); } inlineReader.PerformGets(); @@ -128,19 +125,17 @@ int main(int argc, char *argv[]) } namev += std::to_string(v); - inlineFloats[v] = inlineIO.DefineVariable( - namev, {size * Nx}, {rank * Nx}, {Nx}, adios2::ConstantDims); + inlineFloats[v] = inlineIO.DefineVariable(namev, {size * Nx}, {rank * Nx}, {Nx}, + adios2::ConstantDims); } /** global single value variable: name */ adios2::Variable inlineTimeStep = inlineIO.DefineVariable("timeStep"); - adios2::Engine inlineWriter = - inlineIO.Open("myWriteID", adios2::Mode::Write); + adios2::Engine inlineWriter = inlineIO.Open("myWriteID", adios2::Mode::Write); - adios2::Engine inlineReader = - inlineIO.Open("myReadID", adios2::Mode::Read); + adios2::Engine inlineReader = inlineIO.Open("myReadID", adios2::Mode::Read); for (unsigned int timeStep = 0; timeStep < 3; ++timeStep) { @@ -159,9 +154,8 @@ int main(int argc, char *argv[]) inlineWriter.Put(inlineFloats[v], myFloats.data()); } - const std::string myString( - "Hello from rank: " + std::to_string(rank) + - " and timestep: " + std::to_string(timeStep)); + const std::string myString("Hello from rank: " + std::to_string(rank) + + " and timestep: " + std::to_string(timeStep)); if (rank == 0) { diff --git a/examples/hello/skeleton/HelloSkeletonArgs.cpp b/examples/hello/skeleton/HelloSkeletonArgs.cpp index c35c1c16b8..2ee3b8ff64 100644 --- a/examples/hello/skeleton/HelloSkeletonArgs.cpp +++ b/examples/hello/skeleton/HelloSkeletonArgs.cpp @@ -19,9 +19,8 @@ static void printUsage(bool isWriter) { if (isWriter) { - std::cout - << "Usage: Usage: helloSkeletonWriter config N M nx ny " - "steps sleeptime\n"; + std::cout << "Usage: Usage: helloSkeletonWriter config N M nx ny " + "steps sleeptime\n"; } else { @@ -32,12 +31,11 @@ static void printUsage(bool isWriter) << " M: number of processes in Y dimension\n"; if (isWriter) { - std::cout - << " nx: local array size in X dimension per processor\n" - << " ny: local array size in Y dimension per processor\n" - << " steps: the total number of steps to output\n" - << " sleeptime: wait this many milliseconds between output " - "steps\n\n"; + std::cout << " nx: local array size in X dimension per processor\n" + << " ny: local array size in Y dimension per processor\n" + << " steps: the total number of steps to output\n" + << " sleeptime: wait this many milliseconds between output " + "steps\n\n"; } } @@ -47,14 +45,12 @@ static unsigned int convertToUint(std::string varName, char *arg) unsigned int retval = std::strtoul(arg, &end, 10); if (end[0] || errno == ERANGE) { - throw std::invalid_argument("Invalid value given for " + varName + - ": " + std::string(arg)); + throw std::invalid_argument("Invalid value given for " + varName + ": " + std::string(arg)); } return retval; } -HelloSkeletonArgs::HelloSkeletonArgs(bool isWriter, int argc, char *argv[], - int rank, int nproc) +HelloSkeletonArgs::HelloSkeletonArgs(bool isWriter, int argc, char *argv[], int rank, int nproc) : rank{rank} { npx = npy = ndx = ndy = steps = sleeptime = 0; @@ -92,8 +88,7 @@ HelloSkeletonArgs::HelloSkeletonArgs(bool isWriter, int argc, char *argv[], if (npx * npy != static_cast(nproc)) { - throw std::invalid_argument( - "N*M must equal the number of processes"); + throw std::invalid_argument("N*M must equal the number of processes"); } } catch (std::invalid_argument &e) @@ -127,6 +122,6 @@ void HelloSkeletonArgs::DecomposeArray(size_t NX, size_t NY) ndy = gndy - ndy * (npy - 1); } - std::cout << "rank " << rank << " reads 2D slice " << ndx << " x " << ndy - << " from offset (" << offsx << "," << offsy << ")" << std::endl; + std::cout << "rank " << rank << " reads 2D slice " << ndx << " x " << ndy << " from offset (" + << offsx << "," << offsy << ")" << std::endl; } diff --git a/examples/hello/skeleton/HelloSkeletonArgs.h b/examples/hello/skeleton/HelloSkeletonArgs.h index 1cfeb2e776..7ae34366f0 100644 --- a/examples/hello/skeleton/HelloSkeletonArgs.h +++ b/examples/hello/skeleton/HelloSkeletonArgs.h @@ -41,8 +41,7 @@ class HelloSkeletonArgs int rank; // MPI rank unsigned int nproc; // number of processors - HelloSkeletonArgs(bool isWriter, int argc, char *argv[], int rank, - int nproc); + HelloSkeletonArgs(bool isWriter, int argc, char *argv[], int rank, int nproc); void DecomposeArray(size_t NX, size_t NY); }; diff --git a/examples/hello/skeleton/HelloSkeletonPrint.h b/examples/hello/skeleton/HelloSkeletonPrint.h index 9c6a893f90..f8da9a98f8 100644 --- a/examples/hello/skeleton/HelloSkeletonPrint.h +++ b/examples/hello/skeleton/HelloSkeletonPrint.h @@ -17,8 +17,8 @@ #include -void printDataStep(const float *data, const adios2::Dims &size, - const adios2::Dims &offset, const int rank, const int step) +void printDataStep(const float *data, const adios2::Dims &size, const adios2::Dims &offset, + const int rank, const int step) { std::ofstream myfile; std::string filename = "data." + std::to_string(rank); @@ -32,12 +32,11 @@ void printDataStep(const float *data, const adios2::Dims &size, } uint64_t nelems = size[0] * size[1]; - myfile << "rank=" << rank << " size=" << size[0] << "x" << size[1] - << " offsets=" << offset[0] << ":" << offset[1] << " step=" << step - << std::endl; + myfile << "rank=" << rank << " size=" << size[0] << "x" << size[1] << " offsets=" << offset[0] + << ":" << offset[1] << " step=" << step << std::endl; - myfile << " step row columns " << offset[1] << "..." - << offset[1] + size[1] - 1 << std::endl; + myfile << " step row columns " << offset[1] << "..." << offset[1] + size[1] - 1 + << std::endl; myfile << " "; for (size_t j = 0; j < size[1]; j++) { @@ -51,8 +50,7 @@ void printDataStep(const float *data, const adios2::Dims &size, myfile << std::setw(5) << step << std::setw(5) << offset[0] + i; for (size_t j = 0; j < size[1]; j++) { - myfile << std::setw(9) << std::setprecision(4) - << data[i * size[1] + j]; + myfile << std::setw(9) << std::setprecision(4) << data[i * size[1] + j]; } myfile << std::endl; } diff --git a/examples/hello/skeleton/helloSkeletonReader.cpp b/examples/hello/skeleton/helloSkeletonReader.cpp index 882ddf1407..5744647b2a 100644 --- a/examples/hello/skeleton/helloSkeletonReader.cpp +++ b/examples/hello/skeleton/helloSkeletonReader.cpp @@ -41,8 +41,7 @@ int main(int argc, char *argv[]) adios2::ADIOS adios(settings.configfile); #endif adios2::IO io = adios.DeclareIO("reader"); - adios2::Engine reader = - io.Open(settings.streamname, adios2::Mode::Read); + adios2::Engine reader = io.Open(settings.streamname, adios2::Mode::Read); int step = 0; adios2::Variable vMyArray; @@ -51,8 +50,7 @@ int main(int argc, char *argv[]) while (true) { - adios2::StepStatus status = - reader.BeginStep(adios2::StepMode::Read, 60.0f); + adios2::StepStatus status = reader.BeginStep(adios2::StepMode::Read, 60.0f); if (status != adios2::StepStatus::OK) { break; @@ -65,11 +63,10 @@ int main(int argc, char *argv[]) vMyArray = io.InquireVariable("myArray"); if (!vMyArray) { - std::cout - << "Missing 'myArray' variable. The Skeleton reader " - "engine must retrieve variables from the writer and " - "create Variable objects before they can be " - "inquired\n"; + std::cout << "Missing 'myArray' variable. The Skeleton reader " + "engine must retrieve variables from the writer and " + "create Variable objects before they can be " + "inquired\n"; count.push_back(0); count.push_back(0); start.push_back(0); @@ -79,8 +76,7 @@ int main(int argc, char *argv[]) { // now read the variable // Get the read decomposition - settings.DecomposeArray(vMyArray.Shape()[0], - vMyArray.Shape()[1]); + settings.DecomposeArray(vMyArray.Shape()[0], vMyArray.Shape()[1]); count.push_back(settings.ndx); count.push_back(settings.ndy); start.push_back(settings.offsx); @@ -106,8 +102,7 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) diff --git a/examples/hello/skeleton/helloSkeletonWriter.cpp b/examples/hello/skeleton/helloSkeletonWriter.cpp index 3d4a9699d8..407fe967dc 100644 --- a/examples/hello/skeleton/helloSkeletonWriter.cpp +++ b/examples/hello/skeleton/helloSkeletonWriter.cpp @@ -53,12 +53,10 @@ int main(int argc, char *argv[]) adios2::IO io = adios.DeclareIO("writer"); adios2::Variable varArray = io.DefineVariable( - "myArray", {settings.gndx, settings.gndy}, - {settings.offsx, settings.offsy}, {settings.ndx, settings.ndy}, - adios2::ConstantDims); + "myArray", {settings.gndx, settings.gndy}, {settings.offsx, settings.offsy}, + {settings.ndx, settings.ndy}, adios2::ConstantDims); - adios2::Engine writer = - io.Open(settings.streamname, adios2::Mode::Write); + adios2::Engine writer = io.Open(settings.streamname, adios2::Mode::Write); for (size_t step = 0; step < settings.steps; ++step) { @@ -74,16 +72,14 @@ int main(int argc, char *argv[]) writer.BeginStep(adios2::StepMode::Append); writer.Put(varArray, myArray.data()); writer.EndStep(); - std::this_thread::sleep_for( - std::chrono::milliseconds(settings.sleeptime)); + std::this_thread::sleep_for(std::chrono::milliseconds(settings.sleeptime)); } writer.Close(); } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) diff --git a/examples/hello/sstReader/helloSstReader.cpp b/examples/hello/sstReader/helloSstReader.cpp index 8b8df3f8dc..8dfcb1ba0c 100644 --- a/examples/hello/sstReader/helloSstReader.cpp +++ b/examples/hello/sstReader/helloSstReader.cpp @@ -54,10 +54,8 @@ int main(int argc, char *argv[]) adios2::Engine sstReader = sstIO.Open("helloSst", adios2::Mode::Read); sstReader.BeginStep(); - adios2::Variable bpFloats = - sstIO.InquireVariable("bpFloats"); - std::cout << "Incoming variable is of size " << bpFloats.Shape()[0] - << "\n"; + adios2::Variable bpFloats = sstIO.InquireVariable("bpFloats"); + std::cout << "Incoming variable is of size " << bpFloats.Shape()[0] << "\n"; const std::size_t total_size = bpFloats.Shape()[0]; const std::size_t my_start = (total_size / size) * rank; const std::size_t my_count = (total_size / size); @@ -80,8 +78,7 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) diff --git a/examples/hello/sstWriter/helloSstWriter.cpp b/examples/hello/sstWriter/helloSstWriter.cpp index 27641cd9a3..e4c58b1b17 100644 --- a/examples/hello/sstWriter/helloSstWriter.cpp +++ b/examples/hello/sstWriter/helloSstWriter.cpp @@ -35,11 +35,11 @@ int main(int argc, char *argv[]) size = 1; #endif - std::vector myFloats = { - (float)10.0 * rank + 0, (float)10.0 * rank + 1, (float)10.0 * rank + 2, - (float)10.0 * rank + 3, (float)10.0 * rank + 4, (float)10.0 * rank + 5, - (float)10.0 * rank + 6, (float)10.0 * rank + 7, (float)10.0 * rank + 8, - (float)10.0 * rank + 9}; + std::vector myFloats = {(float)10.0 * rank + 0, (float)10.0 * rank + 1, + (float)10.0 * rank + 2, (float)10.0 * rank + 3, + (float)10.0 * rank + 4, (float)10.0 * rank + 5, + (float)10.0 * rank + 6, (float)10.0 * rank + 7, + (float)10.0 * rank + 8, (float)10.0 * rank + 9}; const std::size_t Nx = myFloats.size(); try @@ -53,8 +53,7 @@ int main(int argc, char *argv[]) sstIO.SetEngine("Sst"); // Define variable and local size - auto bpFloats = sstIO.DefineVariable("bpFloats", {size * Nx}, - {rank * Nx}, {Nx}); + auto bpFloats = sstIO.DefineVariable("bpFloats", {size * Nx}, {rank * Nx}, {Nx}); // Create engine smart pointer to Sst Engine due to polymorphism, // Open returns a smart pointer to Engine containing the Derived class @@ -67,15 +66,13 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) { - std::cout - << "IO System base failure exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "IO System base failure exception, STOPPING PROGRAM from rank " << rank + << "\n"; std::cout << e.what() << "\n"; } catch (std::exception &e) diff --git a/examples/inlineMWE/inlineMWE.cpp b/examples/inlineMWE/inlineMWE.cpp index 9024e5bd08..41d4ba37a6 100644 --- a/examples/inlineMWE/inlineMWE.cpp +++ b/examples/inlineMWE/inlineMWE.cpp @@ -16,16 +16,14 @@ int main(int argc, char *argv[]) { writer.BeginStep(); std::vector v(N, 3.2); - std::cout << "Putting data at address " << v.data() - << " into inline writer.\n"; + std::cout << "Putting data at address " << v.data() << " into inline writer.\n"; writer.Put(u, v.data()); writer.EndStep(); reader.BeginStep(); double *data = nullptr; reader.Get(u, &data); - std::cout << "Getting data from address " << data - << " via inline reader\n"; + std::cout << "Getting data from address " << data << " via inline reader\n"; reader.EndStep(); } return 0; diff --git a/examples/plugins/engine/ExampleReadPlugin.cpp b/examples/plugins/engine/ExampleReadPlugin.cpp index 29ac7daeea..b896f9104f 100644 --- a/examples/plugins/engine/ExampleReadPlugin.cpp +++ b/examples/plugins/engine/ExampleReadPlugin.cpp @@ -18,8 +18,8 @@ namespace adios2 namespace plugin { -ExampleReadPlugin::ExampleReadPlugin(core::IO &io, const std::string &name, - const Mode mode, helper::Comm comm) +ExampleReadPlugin::ExampleReadPlugin(core::IO &io, const std::string &name, const Mode mode, + helper::Comm comm) : PluginEngineInterface(io, name, mode, comm.Duplicate()) { Init(); @@ -61,16 +61,15 @@ void ExampleReadPlugin::Init() m_DataFile.open(fileName, std::ofstream::in); if (!m_DataFile) { - throw std::ios_base::failure("ExampleReadPlugin: Failed to open file " + - fileName); + throw std::ios_base::failure("ExampleReadPlugin: Failed to open file " + fileName); } std::string varfName = dir + "/vars.txt"; m_VarFile.open(varfName, std::ofstream::in); if (!m_VarFile) { - throw std::ios_base::failure("ExampleReadPlugin: Failed to open file " + - varfName + ".vars"); + throw std::ios_base::failure("ExampleReadPlugin: Failed to open file " + varfName + + ".vars"); } // get var info @@ -92,31 +91,29 @@ void ExampleReadPlugin::Init() { // not supported } -#define declare_template_instantiation(T) \ - else if (type == helper::GetDataType()) \ - { \ - AddVariable(name, shape, start, count); \ +#define declare_template_instantiation(T) \ + else if (type == helper::GetDataType()) \ + { \ + AddVariable(name, shape, start, count); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation } } -#define declare(T) \ - void ExampleReadPlugin::DoGetSync(core::Variable &variable, T *values) \ - { \ - ReadVariable(variable, values); \ - } \ - void ExampleReadPlugin::DoGetDeferred(core::Variable &variable, \ - T *values) \ - { \ - ReadVariable(variable, values); \ +#define declare(T) \ + void ExampleReadPlugin::DoGetSync(core::Variable &variable, T *values) \ + { \ + ReadVariable(variable, values); \ + } \ + void ExampleReadPlugin::DoGetDeferred(core::Variable &variable, T *values) \ + { \ + ReadVariable(variable, values); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare) #undef declare -StepStatus ExampleReadPlugin::BeginStep(StepMode mode, - const float timeoutSeconds) +StepStatus ExampleReadPlugin::BeginStep(StepMode mode, const float timeoutSeconds) { return StepStatus::OK; } @@ -134,13 +131,10 @@ void ExampleReadPlugin::DoClose(const int transportIndex) {} extern "C" { -adios2::plugin::ExampleReadPlugin *EngineCreate(adios2::core::IO &io, - const std::string &name, - const adios2::Mode mode, - adios2::helper::Comm comm) +adios2::plugin::ExampleReadPlugin *EngineCreate(adios2::core::IO &io, const std::string &name, + const adios2::Mode mode, adios2::helper::Comm comm) { - return new adios2::plugin::ExampleReadPlugin(io, name, mode, - comm.Duplicate()); + return new adios2::plugin::ExampleReadPlugin(io, name, mode, comm.Duplicate()); } void EngineDestroy(adios2::plugin::ExampleReadPlugin *obj) { delete obj; } diff --git a/examples/plugins/engine/ExampleReadPlugin.h b/examples/plugins/engine/ExampleReadPlugin.h index 9fff0ae316..a6126a4032 100644 --- a/examples/plugins/engine/ExampleReadPlugin.h +++ b/examples/plugins/engine/ExampleReadPlugin.h @@ -36,8 +36,8 @@ namespace plugin class ExampleReadPlugin : public PluginEngineInterface { public: - ExampleReadPlugin(core::IO &io, const std::string &name, - const Mode openMode, helper::Comm comm); + ExampleReadPlugin(core::IO &io, const std::string &name, const Mode openMode, + helper::Comm comm); virtual ~ExampleReadPlugin(); /** Indicates beginning of a step **/ @@ -56,8 +56,8 @@ class ExampleReadPlugin : public PluginEngineInterface protected: void Init() override; -#define declare(T) \ - void DoGetSync(core::Variable &variable, T *values) override; \ +#define declare(T) \ + void DoGetSync(core::Variable &variable, T *values) override; \ void DoGetDeferred(core::Variable &variable, T *values) override; ADIOS2_FOREACH_STDTYPE_1ARG(declare) #undef declare @@ -70,8 +70,7 @@ class ExampleReadPlugin : public PluginEngineInterface size_t m_CurrentStep = 0; template - void AddVariable(const std::string &name, Dims shape, Dims start, - Dims count); + void AddVariable(const std::string &name, Dims shape, Dims start, Dims count); template void ReadVariable(core::Variable &variable, T *values); @@ -83,10 +82,9 @@ class ExampleReadPlugin : public PluginEngineInterface extern "C" { PLUGIN_ENGINE_READ_EXPORT adios2::plugin::ExampleReadPlugin * -EngineCreate(adios2::core::IO &io, const std::string &name, - const adios2::Mode mode, adios2::helper::Comm comm); -PLUGIN_ENGINE_READ_EXPORT void -EngineDestroy(adios2::plugin::ExampleReadPlugin *obj); +EngineCreate(adios2::core::IO &io, const std::string &name, const adios2::Mode mode, + adios2::helper::Comm comm); +PLUGIN_ENGINE_READ_EXPORT void EngineDestroy(adios2::plugin::ExampleReadPlugin *obj); } #endif /* EXAMPLEREADPLUGIN_H_ */ diff --git a/examples/plugins/engine/ExampleReadPlugin.tcc b/examples/plugins/engine/ExampleReadPlugin.tcc index eef62f09d5..bf1195549b 100644 --- a/examples/plugins/engine/ExampleReadPlugin.tcc +++ b/examples/plugins/engine/ExampleReadPlugin.tcc @@ -19,8 +19,7 @@ namespace plugin { template -void ExampleReadPlugin::AddVariable(const std::string &name, Dims shape, - Dims start, Dims count) +void ExampleReadPlugin::AddVariable(const std::string &name, Dims shape, Dims start, Dims count) { core::Variable *v = m_IO.InquireVariable(name); if (!v) @@ -30,8 +29,7 @@ void ExampleReadPlugin::AddVariable(const std::string &name, Dims shape, } template -inline void ExampleReadPlugin::ReadVariable(core::Variable &variable, - T *values) +inline void ExampleReadPlugin::ReadVariable(core::Variable &variable, T *values) { while (m_DataFile.good()) { @@ -65,9 +63,8 @@ inline void ExampleReadPlugin::ReadVariable(core::Variable &variable, } template <> -inline void -ExampleReadPlugin::ReadVariable(core::Variable &variable, - std::string *values) +inline void ExampleReadPlugin::ReadVariable(core::Variable &variable, + std::string *values) { while (m_DataFile.good()) { @@ -82,8 +79,7 @@ ExampleReadPlugin::ReadVariable(core::Variable &variable, } template <> -inline void ExampleReadPlugin::ReadVariable(core::Variable &variable, - char *values) +inline void ExampleReadPlugin::ReadVariable(core::Variable &variable, char *values) { while (m_DataFile.good()) { @@ -101,9 +97,8 @@ inline void ExampleReadPlugin::ReadVariable(core::Variable &variable, } template <> -inline void -ExampleReadPlugin::ReadVariable(core::Variable &variable, - unsigned char *values) +inline void ExampleReadPlugin::ReadVariable(core::Variable &variable, + unsigned char *values) { while (m_DataFile.good()) { @@ -123,9 +118,8 @@ ExampleReadPlugin::ReadVariable(core::Variable &variable, } template <> -inline void -ExampleReadPlugin::ReadVariable(core::Variable &variable, - signed char *values) +inline void ExampleReadPlugin::ReadVariable(core::Variable &variable, + signed char *values) { while (m_DataFile.good()) { @@ -145,8 +139,7 @@ ExampleReadPlugin::ReadVariable(core::Variable &variable, } template <> -inline void ExampleReadPlugin::ReadVariable(core::Variable &variable, - short *values) +inline void ExampleReadPlugin::ReadVariable(core::Variable &variable, short *values) { while (m_DataFile.good()) { @@ -166,9 +159,8 @@ inline void ExampleReadPlugin::ReadVariable(core::Variable &variable, } template <> -inline void -ExampleReadPlugin::ReadVariable(core::Variable &variable, - unsigned short *values) +inline void ExampleReadPlugin::ReadVariable(core::Variable &variable, + unsigned short *values) { while (m_DataFile.good()) { @@ -188,9 +180,8 @@ ExampleReadPlugin::ReadVariable(core::Variable &variable, } template <> -inline void -ExampleReadPlugin::ReadVariable(core::Variable &variable, - long double *values) +inline void ExampleReadPlugin::ReadVariable(core::Variable &variable, + long double *values) { while (m_DataFile.good()) { @@ -208,8 +199,8 @@ ExampleReadPlugin::ReadVariable(core::Variable &variable, } catch (...) { - std::throw_with_nested(std::invalid_argument( - "ERROR: could not cast " + val + " to long double ")); + std::throw_with_nested( + std::invalid_argument("ERROR: could not cast " + val + " to long double ")); } } break; @@ -218,21 +209,17 @@ ExampleReadPlugin::ReadVariable(core::Variable &variable, } template <> -inline void -ExampleReadPlugin::ReadVariable(core::Variable> &variable, - std::complex *values) +inline void ExampleReadPlugin::ReadVariable(core::Variable> &variable, + std::complex *values) { - throw std::invalid_argument( - "ERROR: std::complex not supported in this engine"); + throw std::invalid_argument("ERROR: std::complex not supported in this engine"); } template <> -inline void -ExampleReadPlugin::ReadVariable(core::Variable> &variable, - std::complex *values) +inline void ExampleReadPlugin::ReadVariable(core::Variable> &variable, + std::complex *values) { - throw std::invalid_argument( - "ERROR: std::complex not supported in this engine"); + throw std::invalid_argument("ERROR: std::complex not supported in this engine"); } } // end namespace plugin } // end namespace adios2 diff --git a/examples/plugins/engine/ExampleWritePlugin.cpp b/examples/plugins/engine/ExampleWritePlugin.cpp index 9a969b3f3a..083de1693b 100644 --- a/examples/plugins/engine/ExampleWritePlugin.cpp +++ b/examples/plugins/engine/ExampleWritePlugin.cpp @@ -19,8 +19,8 @@ namespace adios2 namespace plugin { -ExampleWritePlugin::ExampleWritePlugin(core::IO &io, const std::string &name, - const Mode mode, helper::Comm comm) +ExampleWritePlugin::ExampleWritePlugin(core::IO &io, const std::string &name, const Mode mode, + helper::Comm comm) : PluginEngineInterface(io, name, mode, comm.Duplicate()) { Init(); @@ -46,21 +46,18 @@ void ExampleWritePlugin::Init() m_DataFile.open(fileName); if (!m_DataFile) { - throw std::ios_base::failure( - "ExampleWritePlugin: Failed to open file " + fileName); + throw std::ios_base::failure("ExampleWritePlugin: Failed to open file " + fileName); } std::string varfName = dir + "/vars.txt"; m_VarFile.open(varfName); if (!m_VarFile) { - throw std::ios_base::failure( - "ExampleWritePlugin: Failed to open file " + varfName); + throw std::ios_base::failure("ExampleWritePlugin: Failed to open file " + varfName); } } -StepStatus ExampleWritePlugin::BeginStep(StepMode mode, - const float timeoutSeconds) +StepStatus ExampleWritePlugin::BeginStep(StepMode mode, const float timeoutSeconds) { WriteVarsFromIO(); return StepStatus::OK; @@ -70,16 +67,14 @@ size_t ExampleWritePlugin::CurrentStep() const { return m_CurrentStep; } void ExampleWritePlugin::EndStep() { m_CurrentStep++; } -#define declare(T) \ - void ExampleWritePlugin::DoPutSync(core::Variable &variable, \ - const T *values) \ - { \ - WriteArray(variable, values); \ - } \ - void ExampleWritePlugin::DoPutDeferred(core::Variable &variable, \ - const T *values) \ - { \ - WriteArray(variable, values); \ +#define declare(T) \ + void ExampleWritePlugin::DoPutSync(core::Variable &variable, const T *values) \ + { \ + WriteArray(variable, values); \ + } \ + void ExampleWritePlugin::DoPutDeferred(core::Variable &variable, const T *values) \ + { \ + WriteArray(variable, values); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare) #undef declare @@ -95,13 +90,13 @@ void ExampleWritePlugin::WriteVarsFromIO() { const std::string &varName = vpair.first; const DataType varType = vpair.second->m_Type; -#define declare_template_instantiation(T) \ - if (varType == helper::GetDataType()) \ - { \ - core::Variable *v = m_IO.InquireVariable(varName); \ - if (!v) \ - return; \ - WriteVariableInfo(*v); \ +#define declare_template_instantiation(T) \ + if (varType == helper::GetDataType()) \ + { \ + core::Variable *v = m_IO.InquireVariable(varName); \ + if (!v) \ + return; \ + WriteVariableInfo(*v); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -113,13 +108,10 @@ void ExampleWritePlugin::WriteVarsFromIO() extern "C" { -adios2::plugin::ExampleWritePlugin *EngineCreate(adios2::core::IO &io, - const std::string &name, - const adios2::Mode mode, - adios2::helper::Comm comm) +adios2::plugin::ExampleWritePlugin *EngineCreate(adios2::core::IO &io, const std::string &name, + const adios2::Mode mode, adios2::helper::Comm comm) { - return new adios2::plugin::ExampleWritePlugin(io, name, mode, - comm.Duplicate()); + return new adios2::plugin::ExampleWritePlugin(io, name, mode, comm.Duplicate()); } void EngineDestroy(adios2::plugin::ExampleWritePlugin *obj) { delete obj; } diff --git a/examples/plugins/engine/ExampleWritePlugin.h b/examples/plugins/engine/ExampleWritePlugin.h index bfdd3fa338..b95b1f56da 100644 --- a/examples/plugins/engine/ExampleWritePlugin.h +++ b/examples/plugins/engine/ExampleWritePlugin.h @@ -36,13 +36,12 @@ namespace plugin class ExampleWritePlugin : public PluginEngineInterface { public: - ExampleWritePlugin(core::IO &io, const std::string &name, - const Mode openMode, helper::Comm comm); + ExampleWritePlugin(core::IO &io, const std::string &name, const Mode openMode, + helper::Comm comm); virtual ~ExampleWritePlugin(); /** Indicates beginning of a step **/ - StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = -1.0) override; + StepStatus BeginStep(StepMode mode, const float timeoutSeconds = -1.0) override; /** Indicates end of a step **/ void EndStep() override; @@ -56,8 +55,8 @@ class ExampleWritePlugin : public PluginEngineInterface protected: void Init() override; -#define declare(T) \ - void DoPutSync(core::Variable &variable, const T *values) override; \ +#define declare(T) \ + void DoPutSync(core::Variable &variable, const T *values) override; \ void DoPutDeferred(core::Variable &variable, const T *values) override; ADIOS2_FOREACH_STDTYPE_1ARG(declare) #undef declare @@ -84,10 +83,9 @@ class ExampleWritePlugin : public PluginEngineInterface extern "C" { PLUGIN_ENGINE_WRITE_EXPORT adios2::plugin::ExampleWritePlugin * -EngineCreate(adios2::core::IO &io, const std::string &name, - const adios2::Mode mode, adios2::helper::Comm comm); -PLUGIN_ENGINE_WRITE_EXPORT void -EngineDestroy(adios2::plugin::ExampleWritePlugin *obj); +EngineCreate(adios2::core::IO &io, const std::string &name, const adios2::Mode mode, + adios2::helper::Comm comm); +PLUGIN_ENGINE_WRITE_EXPORT void EngineDestroy(adios2::plugin::ExampleWritePlugin *obj); } #endif /* EXAMPLEWRITEPLUGIN_H_ */ diff --git a/examples/plugins/engine/ExampleWritePlugin.tcc b/examples/plugins/engine/ExampleWritePlugin.tcc index 4a6fdc737f..e820392f36 100644 --- a/examples/plugins/engine/ExampleWritePlugin.tcc +++ b/examples/plugins/engine/ExampleWritePlugin.tcc @@ -23,14 +23,12 @@ template void ExampleWritePlugin::WriteVariableInfo(core::Variable &variable) { /** write basic variable info to file **/ - m_VarFile << variable.m_Name << ";" << variable.m_Type << ";" - << variable.m_Shape << ";" << variable.m_Start << ";" - << variable.m_Count << std::endl; + m_VarFile << variable.m_Name << ";" << variable.m_Type << ";" << variable.m_Shape << ";" + << variable.m_Start << ";" << variable.m_Count << std::endl; } template -void ExampleWritePlugin::WriteArray(core::Variable &variable, - const T *values) +void ExampleWritePlugin::WriteArray(core::Variable &variable, const T *values) { /** Write variable name and step to file, followed by the actual data on the * next line **/ diff --git a/examples/plugins/engine/examplePluginEngine_write.cpp b/examples/plugins/engine/examplePluginEngine_write.cpp index d9aad21a32..bb6f6f51b9 100644 --- a/examples/plugins/engine/examplePluginEngine_write.cpp +++ b/examples/plugins/engine/examplePluginEngine_write.cpp @@ -64,8 +64,8 @@ int main(int argc, char *argv[]) /** global array: name, { shape (total dimensions) }, { start (local) }, * { count (local) }, all are constant dimensions */ - adios2::Variable var = io.DefineVariable( - "data", {}, {}, {Nx}, adios2::ConstantDims); + adios2::Variable var = + io.DefineVariable("data", {}, {}, {Nx}, adios2::ConstantDims); if (config.empty()) { diff --git a/examples/plugins/operator/examplePluginOperator_read.cpp b/examples/plugins/operator/examplePluginOperator_read.cpp index fd6d0a927f..01e47e92a5 100644 --- a/examples/plugins/operator/examplePluginOperator_read.cpp +++ b/examples/plugins/operator/examplePluginOperator_read.cpp @@ -26,18 +26,16 @@ int main(int argc, char *argv[]) /** Application variable */ std::vector myDoubles = { - 0.0001, 1.0001, 2.0001, 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, - 9.0001, 1.0001, 2.0001, 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, - 9.0001, 8.0001, 2.0001, 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, - 9.0001, 8.0001, 7.0001, 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, - 9.0001, 8.0001, 7.0001, 6.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, - 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 5.0001, 6.0001, 7.0001, 8.0001, - 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 6.0001, 7.0001, 8.0001, - 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, 7.0001, 8.0001, - 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, 2.0001, 8.0001, - 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, 2.0001, 1.0001, - 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, 2.0001, 1.0001, - 0.0001, + 0.0001, 1.0001, 2.0001, 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, 9.0001, + 1.0001, 2.0001, 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, 9.0001, 8.0001, + 2.0001, 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, 9.0001, 8.0001, 7.0001, + 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, 9.0001, 8.0001, 7.0001, 6.0001, + 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, + 5.0001, 6.0001, 7.0001, 8.0001, 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, + 6.0001, 7.0001, 8.0001, 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, + 7.0001, 8.0001, 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, 2.0001, + 8.0001, 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, 2.0001, 1.0001, + 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, 2.0001, 1.0001, 0.0001, }; bool success = false; diff --git a/examples/plugins/operator/examplePluginOperator_write.cpp b/examples/plugins/operator/examplePluginOperator_write.cpp index e8cc86d3c6..28dfe33f4b 100644 --- a/examples/plugins/operator/examplePluginOperator_write.cpp +++ b/examples/plugins/operator/examplePluginOperator_write.cpp @@ -26,18 +26,16 @@ int main(int argc, char *argv[]) /** Application variable */ std::vector myDoubles = { - 0.0001, 1.0001, 2.0001, 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, - 9.0001, 1.0001, 2.0001, 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, - 9.0001, 8.0001, 2.0001, 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, - 9.0001, 8.0001, 7.0001, 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, - 9.0001, 8.0001, 7.0001, 6.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, - 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 5.0001, 6.0001, 7.0001, 8.0001, - 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 6.0001, 7.0001, 8.0001, - 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, 7.0001, 8.0001, - 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, 2.0001, 8.0001, - 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, 2.0001, 1.0001, - 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, 2.0001, 1.0001, - 0.0001, + 0.0001, 1.0001, 2.0001, 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, 9.0001, + 1.0001, 2.0001, 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, 9.0001, 8.0001, + 2.0001, 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, 9.0001, 8.0001, 7.0001, + 3.0001, 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, 9.0001, 8.0001, 7.0001, 6.0001, + 4.0001, 5.0001, 6.0001, 7.0001, 8.0001, 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, + 5.0001, 6.0001, 7.0001, 8.0001, 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, + 6.0001, 7.0001, 8.0001, 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, + 7.0001, 8.0001, 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, 2.0001, + 8.0001, 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, 2.0001, 1.0001, + 9.0001, 8.0001, 7.0001, 6.0001, 5.0001, 4.0001, 3.0001, 2.0001, 1.0001, 0.0001, }; const std::size_t Nx = myDoubles.size(); @@ -53,8 +51,8 @@ int main(int argc, char *argv[]) /** global array: name, { shape (total dimensions) }, { start (local) }, * { count (local) }, all are constant dimensions */ - adios2::Variable var = io.DefineVariable( - "data", {}, {}, {Nx}, adios2::ConstantDims); + adios2::Variable var = + io.DefineVariable("data", {}, {}, {Nx}, adios2::ConstantDims); if (config.empty()) { diff --git a/examples/query/test.cpp b/examples/query/test.cpp index 9b40d57b3d..94da39a0dc 100644 --- a/examples/query/test.cpp +++ b/examples/query/test.cpp @@ -28,13 +28,10 @@ int main(int argc, char *argv[]) std::string dataFileName = "/tmp/heatbp4.bp"; if (argc <= 2) { - std::cout << "Usage: " << argv[0] - << " configFileName dataFilePath (queryFile)" + std::cout << "Usage: " << argv[0] << " configFileName dataFilePath (queryFile)" << std::endl; - std::cout << " e.g. " << argv[0] << " bp4io.xml heat_bp4.bp/ " - << std::endl; - std::cout << " or " << argv[0] - << " bp4io.xml heat_bp4.bp/ q1.json" << std::endl; + std::cout << " e.g. " << argv[0] << " bp4io.xml heat_bp4.bp/ " << std::endl; + std::cout << " or " << argv[0] << " bp4io.xml heat_bp4.bp/ q1.json" << std::endl; return 0; } @@ -50,8 +47,7 @@ int main(int argc, char *argv[]) adios2::ADIOS ad = adios2::ADIOS(configFileName, MPI_COMM_WORLD); adios2::IO queryIO = ad.DeclareIO("query"); - adios2::Engine reader = - queryIO.Open(dataFileName, adios2::Mode::Read, MPI_COMM_WORLD); + adios2::Engine reader = queryIO.Open(dataFileName, adios2::Mode::Read, MPI_COMM_WORLD); #ifdef NEVER adios2::QueryWorker w = adios2::QueryWorker(configFileName, reader); #else @@ -71,8 +67,8 @@ int main(int argc, char *argv[]) w.GetResultCoverage(empty, touched_blocks); // adios2::Box tt({10,10}, {12,12}); // w.GetResultCoverage(tt, touched_blocks); - std::cout << " ... now can read out touched blocks ... size=" - << touched_blocks.size() << std::endl; + std::cout << " ... now can read out touched blocks ... size=" << touched_blocks.size() + << std::endl; for (auto n : touched_blocks) { std::ostringstream startStr; @@ -82,8 +78,8 @@ int main(int argc, char *argv[]) startStr << n.first[k] << " "; countStr << n.second[k] << " "; } - std::cout << "\t[" << startStr.str() << "] [" << countStr.str() - << "]" << std::endl; + std::cout << "\t[" << startStr.str() << "] [" << countStr.str() << "]" + << std::endl; } reader.EndStep(); } @@ -101,8 +97,7 @@ int main(int argc, char *argv[]) return 0; } -bool testMe(std::string &queryConfigFile, std::string const &doubleVarName, - MPI_Comm comm) +bool testMe(std::string &queryConfigFile, std::string const &doubleVarName, MPI_Comm comm) { adios2::ADIOS ad(queryConfigFile, comm); std::string dataFileName = "test.file"; diff --git a/examples/useCases/insituGlobalArrays/insituGlobalArraysReaderNxN.cpp b/examples/useCases/insituGlobalArrays/insituGlobalArraysReaderNxN.cpp index f14cbcc067..45f48d0ab4 100644 --- a/examples/useCases/insituGlobalArrays/insituGlobalArraysReaderNxN.cpp +++ b/examples/useCases/insituGlobalArrays/insituGlobalArraysReaderNxN.cpp @@ -55,8 +55,7 @@ std::string DimsToString(adios2::Dims &dims) * Appends the block info to the passed Varinfo vector if found */ template -void ProcessVariableMetadata(int rank, const std::string &name, - const std::string &type, +void ProcessVariableMetadata(int rank, const std::string &name, const std::string &type, const adios2::Engine &reader, adios2::IO &io, std::vector &varinfos) { @@ -66,23 +65,20 @@ void ProcessVariableMetadata(int rank, const std::string &name, for (auto &block : blocks) { /* offset in first dimension is encoding writer's rank */ - if (block.Start.size() > 0 && - block.Start[0] == static_cast(rank)) + if (block.Start.size() > 0 && block.Start[0] == static_cast(rank)) { /*std::cout << " Rank " << rank << " Variable '" << name << "' found a block dimensions = " << DimsToString(block.Count) << " offset = " << DimsToString(block.Start) << std::endl;*/ - varinfos.push_back( - {name, type, variable.Shape(), block.Start, block.Count}); + varinfos.push_back({name, type, variable.Shape(), block.Start, block.Count}); } } } -std::vector -ProcessMetadata(int rank, const adios2::Engine &reader, adios2::IO &io, - const std::map &varNameList) +std::vector ProcessMetadata(int rank, const adios2::Engine &reader, adios2::IO &io, + const std::map &varNameList) { std::vector varinfos; for (auto &var : varNameList) @@ -94,17 +90,17 @@ ProcessMetadata(int rank, const adios2::Engine &reader, adios2::IO &io, const std::string &shape = it->second; if (!rank) { - std::cout << " Variable '" << name << "' type " << type - << " dimensions = " << shape << std::endl; + std::cout << " Variable '" << name << "' type " << type << " dimensions = " << shape + << std::endl; } if (type == "struct") { // not supported } -#define declare_template_instantiation(T) \ - else if (type == adios2::GetType()) \ - { \ - ProcessVariableMetadata(rank, name, type, reader, io, varinfos); \ +#define declare_template_instantiation(T) \ + else if (type == adios2::GetType()) \ + { \ + ProcessVariableMetadata(rank, name, type, reader, io, varinfos); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -116,8 +112,7 @@ ProcessMetadata(int rank, const adios2::Engine &reader, adios2::IO &io, return varinfos; } -void ReadVariables(int rank, adios2::Engine &reader, adios2::IO &io, - std::vector &varinfos) +void ReadVariables(int rank, adios2::Engine &reader, adios2::IO &io, std::vector &varinfos) { for (auto &vi : varinfos) { @@ -126,8 +121,7 @@ void ReadVariables(int rank, adios2::Engine &reader, adios2::IO &io, << " offset = " << DimsToString(vi.start) << std::endl;*/ if (vi.type == "double") { - adios2::Variable variable = - io.InquireVariable(vi.varName); + adios2::Variable variable = io.InquireVariable(vi.varName); variable.SetSelection({vi.start, vi.count}); reader.Get(variable, vi.data); } @@ -135,8 +129,7 @@ void ReadVariables(int rank, adios2::Engine &reader, adios2::IO &io, { std::cout << "ERROR: This example does not support reading " "variables of type: " - << vi.type << ". Skip reading variable " << vi.varName - << std::endl; + << vi.type << ". Skip reading variable " << vi.varName << std::endl; } } reader.PerformGets(); @@ -155,12 +148,10 @@ void SerialPrintout(std::vector &varinfos, int rank, int nproc) } #endif - std::cout << " Rank " << rank << " variables:" << varinfos.size() - << std::endl; + std::cout << " Rank " << rank << " variables:" << varinfos.size() << std::endl; for (auto &vi : varinfos) { - std::cout << " Name: " << vi.varName - << " dimensions = " << DimsToString(vi.count) + std::cout << " Name: " << vi.varName << " dimensions = " << DimsToString(vi.count) << " offset = " << DimsToString(vi.start) << " = ["; for (auto d : vi.data) { @@ -203,10 +194,8 @@ void ProcessArgs(int rank, int argc, char *argv[]) else if (elc == "dataman") { engineParams["WorkflowMode"] = "p2p"; - engineTransports["WAN"] = {{"Library", "ZMQ"}, - {"Timeout", "2000"}, - {"IPAddress", "127.0.0.1"}, - {"Port", "25600"}}; + engineTransports["WAN"] = { + {"Library", "ZMQ"}, {"Timeout", "2000"}, {"IPAddress", "127.0.0.1"}, {"Port", "25600"}}; } } @@ -236,8 +225,7 @@ int main(int argc, char *argv[]) ProcessArgs(rank, argc, argv); if (!rank) { - std::cout << "Reader: ADIOS2 Engine set to: " << argEngine - << " Parameters:"; + std::cout << "Reader: ADIOS2 Engine set to: " << argEngine << " Parameters:"; for (auto &p : engineParams) { std::cout << " " << p.first << " = " << p.second; @@ -268,8 +256,7 @@ int main(int argc, char *argv[]) while (true) { - adios2::StepStatus status = - reader.BeginStep(adios2::StepMode::Read, 60.0f); + adios2::StepStatus status = reader.BeginStep(adios2::StepMode::Read, 60.0f); if (status == adios2::StepStatus::NotReady) { std::this_thread::sleep_for(std::chrono::milliseconds(1)); @@ -280,20 +267,16 @@ int main(int argc, char *argv[]) break; } - std::map varNameList = - io.AvailableVariables(); + std::map varNameList = io.AvailableVariables(); const size_t nTotalVars = varNameList.size(); if (!rank) { std::cout << "File info:" << std::endl; - std::cout << " Current step: " << reader.CurrentStep() - << std::endl; - std::cout << " Total number of variables = " << nTotalVars - << std::endl; + std::cout << " Current step: " << reader.CurrentStep() << std::endl; + std::cout << " Total number of variables = " << nTotalVars << std::endl; } - std::vector varinfos = - ProcessMetadata(rank, reader, io, varNameList); + std::vector varinfos = ProcessMetadata(rank, reader, io, varNameList); ReadVariables(rank, reader, io, varinfos); SerialPrintout(varinfos, rank, nproc); diff --git a/examples/useCases/insituGlobalArrays/insituGlobalArraysWriter.cpp b/examples/useCases/insituGlobalArrays/insituGlobalArraysWriter.cpp index 56355bd7c6..216dda7f8b 100644 --- a/examples/useCases/insituGlobalArrays/insituGlobalArraysWriter.cpp +++ b/examples/useCases/insituGlobalArrays/insituGlobalArraysWriter.cpp @@ -50,12 +50,10 @@ const size_t BIGDIM = 1000; */ // Which process writes which variables -std::vector> VarTree = { - {"a", "b", "c"}, {"a", "d"}, {"b", "d"}, {"c"}}; +std::vector> VarTree = {{"a", "b", "c"}, {"a", "d"}, {"b", "d"}, {"c"}}; // What size of data do they write -std::vector> SizesTree = { - {5, 5, 5}, {3, 3}, {4, 4}, {5, 5}}; +std::vector> SizesTree = {{5, 5, 5}, {3, 3}, {4, 4}, {5, 5}}; std::string argEngine = "BPFile"; adios2::Params engineParams; @@ -107,9 +105,8 @@ int main(int argc, char *argv[]) { if (!rank) { - std::cout - << "ERROR: Maximum number of processors for this example is " - << maxProc << std::endl; + std::cout << "ERROR: Maximum number of processors for this example is " << maxProc + << std::endl; } exit(1); } @@ -117,8 +114,7 @@ int main(int argc, char *argv[]) ProcessArgs(rank, argc, argv); if (!rank) { - std::cout << "Writer: ADIOS2 Engine set to: " << argEngine - << " Parameters:"; + std::cout << "Writer: ADIOS2 Engine set to: " << argEngine << " Parameters:"; for (auto &p : engineParams) { std::cout << " " << p.first << " = " << p.second; @@ -167,8 +163,8 @@ int main(int argc, char *argv[]) { size_t nelems = SizesTree[rank][i]; Vars[i].resize(nelems); - ADIOSVars[i] = io.DefineVariable( - VarTree[rank][i], {(unsigned int)nproc, BIGDIM}); + ADIOSVars[i] = + io.DefineVariable(VarTree[rank][i], {(unsigned int)nproc, BIGDIM}); } adios2::Engine writer = io.Open("output.bp", adios2::Mode::Write); @@ -189,8 +185,7 @@ int main(int argc, char *argv[]) // variable we write and its offsets in the global spaces // adios2::SelectionBoundingBox sel(); ADIOSVars[i].SetSelection(adios2::Box( - {static_cast(rank), 0}, - {1, static_cast(nelems)})); + {static_cast(rank), 0}, {1, static_cast(nelems)})); writer.Put(ADIOSVars[i], Vars[i].data()); } diff --git a/flake8.cfg b/flake8.cfg index 39b0361140..cc253e3f7d 100644 --- a/flake8.cfg +++ b/flake8.cfg @@ -1,5 +1,5 @@ [flake8] -max-line-length = 80 +max-line-length = 100 max-complexity = 1000 format = pylint ignore = E302,F401,F403,F405,F999,W504 diff --git a/plugins/engines/ParaViewFidesEngine.cpp b/plugins/engines/ParaViewFidesEngine.cpp index 4f2d042071..5abb4817aa 100644 --- a/plugins/engines/ParaViewFidesEngine.cpp +++ b/plugins/engines/ParaViewFidesEngine.cpp @@ -62,10 +62,8 @@ struct ParaViewFidesEngine::EngineImpl node["catalyst/fides/json_file"].set(this->JSONFileName); node["catalyst/fides/data_source_io/source"].set(std::string("source")); node["catalyst/fides/data_source_io/address"].set(address.str()); - node["catalyst/fides/data_source_path/source"].set( - std::string("source")); - node["catalyst/fides/data_source_path/path"].set( - std::string("DataReader")); + node["catalyst/fides/data_source_path/source"].set(std::string("source")); + node["catalyst/fides/data_source_path/path"].set(std::string("DataReader")); catalyst_initialize(conduit_cpp::c_node(&node)); if (this->Rank == 0) @@ -92,10 +90,8 @@ struct ParaViewFidesEngine::EngineImpl node["catalyst/fides/json_file"].set(this->JSONFileName); node["catalyst/fides/data_source_io/source"].set(std::string("source")); node["catalyst/fides/data_source_io/address"].set(address.str()); - node["catalyst/fides/data_source_path/source"].set( - std::string("source")); - node["catalyst/fides/data_source_path/path"].set( - std::string("DataReader")); + node["catalyst/fides/data_source_path/source"].set(std::string("source")); + node["catalyst/fides/data_source_path/path"].set(std::string("DataReader")); // catalyst requires the data node on a channel, but we don't actually // need it when using fides, so just create a dummy object to pass @@ -108,24 +104,21 @@ struct ParaViewFidesEngine::EngineImpl } }; -ParaViewFidesEngine::ParaViewFidesEngine(adios2::core::IO &io, - const std::string &name, +ParaViewFidesEngine::ParaViewFidesEngine(adios2::core::IO &io, const std::string &name, adios2::helper::Comm comm) -: adios2::plugin::PluginEngineInterface(io, name, adios2::Mode::Write, - comm.Duplicate()), +: adios2::plugin::PluginEngineInterface(io, name, adios2::Mode::Write, comm.Duplicate()), Impl(new EngineImpl(io.m_ADIOS)) { // Need to define the Variables in the IO object used for the inline engine const auto &varMap = io.GetVariables(); for (const auto &it : varMap) { -#define declare_type(T) \ - if (it.second->m_Type == adios2::helper::GetDataType()) \ - { \ - this->Impl->Io->DefineVariable( \ - it.first, it.second->m_Shape, it.second->m_Start, \ - it.second->m_Count, it.second->IsConstantDims()); \ - continue; \ +#define declare_type(T) \ + if (it.second->m_Type == adios2::helper::GetDataType()) \ + { \ + this->Impl->Io->DefineVariable(it.first, it.second->m_Shape, it.second->m_Start, \ + it.second->m_Count, it.second->IsConstantDims()); \ + continue; \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -156,16 +149,12 @@ ParaViewFidesEngine::~ParaViewFidesEngine() catalyst_finalize(conduit_cpp::c_node(&node)); } -adios2::StepStatus ParaViewFidesEngine::BeginStep(adios2::StepMode mode, - const float timeoutSeconds) +adios2::StepStatus ParaViewFidesEngine::BeginStep(adios2::StepMode mode, const float timeoutSeconds) { return this->Impl->Writer->BeginStep(mode, timeoutSeconds); } -size_t ParaViewFidesEngine::CurrentStep() const -{ - return this->Impl->Writer->CurrentStep(); -} +size_t ParaViewFidesEngine::CurrentStep() const { return this->Impl->Writer->CurrentStep(); } void ParaViewFidesEngine::EndStep() { @@ -176,20 +165,18 @@ void ParaViewFidesEngine::EndStep() void ParaViewFidesEngine::PerformPuts() { this->Impl->Writer->PerformPuts(); } -#define declare(T) \ - void ParaViewFidesEngine::DoPutSync(adios2::core::Variable &variable, \ - const T *values) \ - { \ - adios2::core::Variable *inlineVar = \ - this->Impl->Io->InquireVariable(variable.m_Name); \ - this->Impl->Writer->Put(*inlineVar, values, adios2::Mode::Sync); \ - } \ - void ParaViewFidesEngine::DoPutDeferred( \ - adios2::core::Variable &variable, const T *values) \ - { \ - adios2::core::Variable *inlineVar = \ - this->Impl->Io->InquireVariable(variable.m_Name); \ - this->Impl->Writer->Put(*inlineVar, values); \ +#define declare(T) \ + void ParaViewFidesEngine::DoPutSync(adios2::core::Variable &variable, const T *values) \ + { \ + adios2::core::Variable *inlineVar = \ + this->Impl->Io->InquireVariable(variable.m_Name); \ + this->Impl->Writer->Put(*inlineVar, values, adios2::Mode::Sync); \ + } \ + void ParaViewFidesEngine::DoPutDeferred(adios2::core::Variable &variable, const T *values) \ + { \ + adios2::core::Variable *inlineVar = \ + this->Impl->Io->InquireVariable(variable.m_Name); \ + this->Impl->Writer->Put(*inlineVar, values); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare) #undef declare @@ -203,10 +190,8 @@ void ParaViewFidesEngine::DoClose(const int transportIndex) extern "C" { -fides_plugin::ParaViewFidesEngine *EngineCreate(adios2::core::IO &io, - const std::string &name, - const adios2::Mode mode, - adios2::helper::Comm comm) +fides_plugin::ParaViewFidesEngine *EngineCreate(adios2::core::IO &io, const std::string &name, + const adios2::Mode mode, adios2::helper::Comm comm) { (void)mode; return new fides_plugin::ParaViewFidesEngine(io, name, comm.Duplicate()); diff --git a/plugins/engines/ParaViewFidesEngine.h b/plugins/engines/ParaViewFidesEngine.h index 8176ddc08b..a7a46a9cbc 100644 --- a/plugins/engines/ParaViewFidesEngine.h +++ b/plugins/engines/ParaViewFidesEngine.h @@ -49,8 +49,7 @@ class ParaViewFidesEngine : public adios2::plugin::PluginEngineInterface ~ParaViewFidesEngine() override; - adios2::StepStatus BeginStep(adios2::StepMode mode, - const float timeoutSeconds = -1.0) override; + adios2::StepStatus BeginStep(adios2::StepMode mode, const float timeoutSeconds = -1.0) override; void EndStep() override; @@ -59,8 +58,8 @@ class ParaViewFidesEngine : public adios2::plugin::PluginEngineInterface void PerformPuts() override; protected: -#define declare_type(T) \ - void DoPutSync(adios2::core::Variable &, const T *) override; \ +#define declare_type(T) \ + void DoPutSync(adios2::core::Variable &, const T *) override; \ void DoPutDeferred(adios2::core::Variable &, const T *) override; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -76,10 +75,8 @@ class ParaViewFidesEngine : public adios2::plugin::PluginEngineInterface extern "C" { -fides_plugin::ParaViewFidesEngine *EngineCreate(adios2::core::IO &io, - const std::string &name, - const adios2::Mode mode, - adios2::helper::Comm comm); +fides_plugin::ParaViewFidesEngine *EngineCreate(adios2::core::IO &io, const std::string &name, + const adios2::Mode mode, adios2::helper::Comm comm); void EngineDestroy(fides_plugin::ParaViewFidesEngine *obj); } diff --git a/plugins/operators/EncryptionOperator.cpp b/plugins/operators/EncryptionOperator.cpp index 3edcb57f7e..4579a4933b 100644 --- a/plugins/operators/EncryptionOperator.cpp +++ b/plugins/operators/EncryptionOperator.cpp @@ -39,8 +39,7 @@ struct EncryptionOperator::EncryptImpl std::fstream keyFile(KeyFilename.c_str()); if (keyFile) { - keyFile.read(reinterpret_cast(&Key), - crypto_secretbox_KEYBYTES); + keyFile.read(reinterpret_cast(&Key), crypto_secretbox_KEYBYTES); keyFile.close(); } else @@ -51,18 +50,16 @@ struct EncryptionOperator::EncryptImpl throw std::runtime_error("couldn't open file to write key"); } crypto_secretbox_keygen(Key); - keyFile.write(reinterpret_cast(&Key), - crypto_secretbox_KEYBYTES); + keyFile.write(reinterpret_cast(&Key), crypto_secretbox_KEYBYTES); keyFile.close(); } // lock the key to avoid swapping to disk if (sodium_mlock(Key, crypto_secretbox_KEYBYTES) == -1) { - throw std::runtime_error( - "Unable to lock memory location of secret key," - " due to system limit on amount of memory that can be locked " - "by a process."); + throw std::runtime_error("Unable to lock memory location of secret key," + " due to system limit on amount of memory that can be locked " + "by a process."); } KeyValid = true; } @@ -97,9 +94,8 @@ __attribute__((no_sanitize("memory"))) #endif #endif size_t -EncryptionOperator::Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) +EncryptionOperator::Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) { if (!Impl->KeyValid) { @@ -114,24 +110,20 @@ EncryptionOperator::Operate(const char *dataIn, const Dims &blockStart, // write any parameters we need to save for the InverseOperate() call // In this case, we just write out the size of the data - size_t sizeIn = - helper::GetTotalSize(blockCount, helper::GetDataTypeSize(type)); + size_t sizeIn = helper::GetTotalSize(blockCount, helper::GetDataTypeSize(type)); PutParameter(bufferOut, offset, sizeIn); // create the nonce directly in the output buffer, since we'll need it for // decryption - unsigned char *nonce = - reinterpret_cast(bufferOut + offset); + unsigned char *nonce = reinterpret_cast(bufferOut + offset); randombytes_buf(nonce, crypto_secretbox_NONCEBYTES); offset += crypto_secretbox_NONCEBYTES; // encrypt data directly into the output buffer size_t cipherTextSize = sizeIn + crypto_secretbox_MACBYTES; - unsigned char *cipherText = - reinterpret_cast(bufferOut + offset); - crypto_secretbox_easy(cipherText, - reinterpret_cast(dataIn), - sizeIn, nonce, Impl->Key); + unsigned char *cipherText = reinterpret_cast(bufferOut + offset); + crypto_secretbox_easy(cipherText, reinterpret_cast(dataIn), sizeIn, + nonce, Impl->Key); offset += cipherTextSize; // need to return the size of data in the buffer @@ -145,8 +137,7 @@ __attribute__((no_sanitize("memory"))) #endif #endif size_t -EncryptionOperator::InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) +EncryptionOperator::InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) { size_t offset = 0; @@ -154,20 +145,17 @@ EncryptionOperator::InverseOperate(const char *bufferIn, const size_t sizeIn, const size_t dataBytes = GetParameter(bufferIn, offset); // grab the nonce ptr - const unsigned char *nonce = - reinterpret_cast(bufferIn + offset); + const unsigned char *nonce = reinterpret_cast(bufferIn + offset); offset += crypto_secretbox_NONCEBYTES; // grab the cipher text ptr size_t cipherTextSize = dataBytes + crypto_secretbox_MACBYTES; - const unsigned char *cipherText = - reinterpret_cast(bufferIn + offset); + const unsigned char *cipherText = reinterpret_cast(bufferIn + offset); offset += cipherTextSize; // decrypt directly into dataOut buffer - if (crypto_secretbox_open_easy(reinterpret_cast(dataOut), - cipherText, cipherTextSize, nonce, - Impl->Key) != 0) + if (crypto_secretbox_open_easy(reinterpret_cast(dataOut), cipherText, + cipherTextSize, nonce, Impl->Key) != 0) { throw std::runtime_error("message forged!"); } @@ -176,18 +164,14 @@ EncryptionOperator::InverseOperate(const char *bufferIn, const size_t sizeIn, return dataBytes; } -bool EncryptionOperator::IsDataTypeValid(const DataType type) const -{ - return true; -} +bool EncryptionOperator::IsDataTypeValid(const DataType type) const { return true; } } // end namespace plugin } // end namespace adios2 extern "C" { -adios2::plugin::EncryptionOperator * -OperatorCreate(const adios2::Params ¶meters) +adios2::plugin::EncryptionOperator *OperatorCreate(const adios2::Params ¶meters) { return new adios2::plugin::EncryptionOperator(parameters); } diff --git a/plugins/operators/EncryptionOperator.h b/plugins/operators/EncryptionOperator.h index 2558f39627..f9b5502750 100644 --- a/plugins/operators/EncryptionOperator.h +++ b/plugins/operators/EncryptionOperator.h @@ -34,12 +34,10 @@ class EncryptionOperator : public PluginOperatorInterface EncryptionOperator(const Params ¶meters); virtual ~EncryptionOperator(); - size_t Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) override; + size_t Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) override; - size_t InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) override; + size_t InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) override; bool IsDataTypeValid(const DataType type) const override; @@ -53,8 +51,7 @@ class EncryptionOperator : public PluginOperatorInterface extern "C" { -adios2::plugin::EncryptionOperator * -OperatorCreate(const adios2::Params ¶meters); +adios2::plugin::EncryptionOperator *OperatorCreate(const adios2::Params ¶meters); void OperatorDestroy(adios2::plugin::EncryptionOperator *obj); } diff --git a/source/adios2/common/ADIOSMacros.h b/source/adios2/common/ADIOSMacros.h index 175ff1b4ef..aac757ad6d 100644 --- a/source/adios2/common/ADIOSMacros.h +++ b/source/adios2/common/ADIOSMacros.h @@ -32,130 +32,130 @@ #undef instantiate_foo */ -#define ADIOS2_FOREACH_ATTRIBUTE_PRIMITIVE_STDTYPE_1ARG(MACRO) \ - MACRO(char) \ - MACRO(int8_t) \ - MACRO(int16_t) \ - MACRO(int32_t) \ - MACRO(int64_t) \ - MACRO(uint8_t) \ - MACRO(uint16_t) \ - MACRO(uint32_t) \ - MACRO(uint64_t) \ - MACRO(float) \ - MACRO(double) \ +#define ADIOS2_FOREACH_ATTRIBUTE_PRIMITIVE_STDTYPE_1ARG(MACRO) \ + MACRO(char) \ + MACRO(int8_t) \ + MACRO(int16_t) \ + MACRO(int32_t) \ + MACRO(int64_t) \ + MACRO(uint8_t) \ + MACRO(uint16_t) \ + MACRO(uint32_t) \ + MACRO(uint64_t) \ + MACRO(float) \ + MACRO(double) \ MACRO(long double) -#define ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(MACRO) \ - ADIOS2_FOREACH_ATTRIBUTE_PRIMITIVE_STDTYPE_1ARG(MACRO) \ - MACRO(std::complex) \ +#define ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(MACRO) \ + ADIOS2_FOREACH_ATTRIBUTE_PRIMITIVE_STDTYPE_1ARG(MACRO) \ + MACRO(std::complex) \ MACRO(std::complex) -#define ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(MACRO) \ - MACRO(std::string) \ +#define ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(MACRO) \ + MACRO(std::string) \ ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(MACRO) -#define ADIOS2_FOREACH_STDTYPE_1ARG(MACRO) \ - MACRO(std::string) \ +#define ADIOS2_FOREACH_STDTYPE_1ARG(MACRO) \ + MACRO(std::string) \ ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(MACRO) -#define ADIOS2_FOREACH_TYPE_1ARG(MACRO) \ - MACRO(std::string) \ - MACRO(char) \ - MACRO(signed char) \ - MACRO(unsigned char) \ - MACRO(short) \ - MACRO(unsigned short) \ - MACRO(int) \ - MACRO(unsigned int) \ - MACRO(long int) \ - MACRO(long long int) \ - MACRO(unsigned long int) \ - MACRO(unsigned long long int) \ - MACRO(float) \ - MACRO(double) \ - MACRO(long double) \ - MACRO(std::complex) \ +#define ADIOS2_FOREACH_TYPE_1ARG(MACRO) \ + MACRO(std::string) \ + MACRO(char) \ + MACRO(signed char) \ + MACRO(unsigned char) \ + MACRO(short) \ + MACRO(unsigned short) \ + MACRO(int) \ + MACRO(unsigned int) \ + MACRO(long int) \ + MACRO(long long int) \ + MACRO(unsigned long int) \ + MACRO(unsigned long long int) \ + MACRO(float) \ + MACRO(double) \ + MACRO(long double) \ + MACRO(std::complex) \ MACRO(std::complex) -#define ADIOS2_FOREACH_PRIMITIVE_TYPE_1ARG(MACRO) \ - MACRO(char) \ - MACRO(signed char) \ - MACRO(unsigned char) \ - MACRO(short) \ - MACRO(unsigned short) \ - MACRO(int) \ - MACRO(unsigned int) \ - MACRO(long int) \ - MACRO(long long int) \ - MACRO(unsigned long int) \ - MACRO(unsigned long long int) \ - MACRO(float) \ - MACRO(double) \ - MACRO(long double) \ - MACRO(std::complex) \ +#define ADIOS2_FOREACH_PRIMITIVE_TYPE_1ARG(MACRO) \ + MACRO(char) \ + MACRO(signed char) \ + MACRO(unsigned char) \ + MACRO(short) \ + MACRO(unsigned short) \ + MACRO(int) \ + MACRO(unsigned int) \ + MACRO(long int) \ + MACRO(long long int) \ + MACRO(unsigned long int) \ + MACRO(unsigned long long int) \ + MACRO(float) \ + MACRO(double) \ + MACRO(long double) \ + MACRO(std::complex) \ MACRO(std::complex) -#define ADIOS2_FOREACH_COMPLEX_PRIMITIVE_TYPE_1ARG(MACRO) \ - MACRO(float) \ - MACRO(double) \ +#define ADIOS2_FOREACH_COMPLEX_PRIMITIVE_TYPE_1ARG(MACRO) \ + MACRO(float) \ + MACRO(double) \ MACRO(long double) -#define ADIOS2_FOREACH_CHAR_TYPE_1ARG(MACRO) \ - MACRO(char) \ - MACRO(signed char) \ +#define ADIOS2_FOREACH_CHAR_TYPE_1ARG(MACRO) \ + MACRO(char) \ + MACRO(signed char) \ MACRO(unsigned char) -#define ADIOS2_FOREACH_NUMERIC_TYPE_1ARG(MACRO) \ - MACRO(short) \ - MACRO(unsigned short) \ - MACRO(int) \ - MACRO(unsigned int) \ - MACRO(long int) \ - MACRO(long long int) \ - MACRO(unsigned long int) \ - MACRO(unsigned long long int) \ - MACRO(float) \ - MACRO(double) \ - MACRO(long double) \ - MACRO(std::complex) \ +#define ADIOS2_FOREACH_NUMERIC_TYPE_1ARG(MACRO) \ + MACRO(short) \ + MACRO(unsigned short) \ + MACRO(int) \ + MACRO(unsigned int) \ + MACRO(long int) \ + MACRO(long long int) \ + MACRO(unsigned long int) \ + MACRO(unsigned long long int) \ + MACRO(float) \ + MACRO(double) \ + MACRO(long double) \ + MACRO(std::complex) \ MACRO(std::complex) -#define ADIOS2_FOREACH_ATTRIBUTE_TYPE_1ARG(MACRO) \ - MACRO(std::string) \ - MACRO(char) \ - MACRO(signed char) \ - MACRO(unsigned char) \ - MACRO(short) \ - MACRO(unsigned short) \ - MACRO(int) \ - MACRO(unsigned int) \ - MACRO(long int) \ - MACRO(unsigned long int) \ - MACRO(long long int) \ - MACRO(unsigned long long int) \ - MACRO(float) \ - MACRO(double) \ - MACRO(long double) \ - MACRO(std::complex) \ +#define ADIOS2_FOREACH_ATTRIBUTE_TYPE_1ARG(MACRO) \ + MACRO(std::string) \ + MACRO(char) \ + MACRO(signed char) \ + MACRO(unsigned char) \ + MACRO(short) \ + MACRO(unsigned short) \ + MACRO(int) \ + MACRO(unsigned int) \ + MACRO(long int) \ + MACRO(unsigned long int) \ + MACRO(long long int) \ + MACRO(unsigned long long int) \ + MACRO(float) \ + MACRO(double) \ + MACRO(long double) \ + MACRO(std::complex) \ MACRO(std::complex) -#define ADIOS2_FOREACH_ATTRIBUTE_PRIMITIVE_TYPE_1ARG(MACRO) \ - MACRO(char) \ - MACRO(signed char) \ - MACRO(unsigned char) \ - MACRO(short) \ - MACRO(unsigned short) \ - MACRO(int) \ - MACRO(unsigned int) \ - MACRO(long int) \ - MACRO(unsigned long int) \ - MACRO(long long int) \ - MACRO(unsigned long long int) \ - MACRO(float) \ - MACRO(double) \ - MACRO(long double) \ - MACRO(std::complex) \ +#define ADIOS2_FOREACH_ATTRIBUTE_PRIMITIVE_TYPE_1ARG(MACRO) \ + MACRO(char) \ + MACRO(signed char) \ + MACRO(unsigned char) \ + MACRO(short) \ + MACRO(unsigned short) \ + MACRO(int) \ + MACRO(unsigned int) \ + MACRO(long int) \ + MACRO(unsigned long int) \ + MACRO(long long int) \ + MACRO(unsigned long long int) \ + MACRO(float) \ + MACRO(double) \ + MACRO(long double) \ + MACRO(std::complex) \ MACRO(std::complex) /** @@ -182,88 +182,87 @@ virtual std::complex& foo_CDouble(std::string bar); */ -#define ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_2ARGS(MACRO) \ - MACRO(std::string, string) \ - MACRO(int8_t, int8) \ - MACRO(char, char) \ - MACRO(uint8_t, uint8) \ - MACRO(int16_t, int16) \ - MACRO(uint16_t, uint16) \ - MACRO(int32_t, int32) \ - MACRO(uint32_t, uint32) \ - MACRO(int64_t, int64) \ - MACRO(uint64_t, uint64) \ - MACRO(float, float) \ - MACRO(double, double) \ - MACRO(long double, ldouble) \ - MACRO(std::complex, cfloat) \ +#define ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_2ARGS(MACRO) \ + MACRO(std::string, string) \ + MACRO(int8_t, int8) \ + MACRO(char, char) \ + MACRO(uint8_t, uint8) \ + MACRO(int16_t, int16) \ + MACRO(uint16_t, uint16) \ + MACRO(int32_t, int32) \ + MACRO(uint32_t, uint32) \ + MACRO(int64_t, int64) \ + MACRO(uint64_t, uint64) \ + MACRO(float, float) \ + MACRO(double, double) \ + MACRO(long double, ldouble) \ + MACRO(std::complex, cfloat) \ MACRO(std::complex, cdouble) -#define ADIOS2_FOREACH_PRIMITVE_STDTYPE_2ARGS(MACRO) \ - MACRO(int8_t, int8) \ - MACRO(char, char) \ - MACRO(uint8_t, uint8) \ - MACRO(int16_t, int16) \ - MACRO(uint16_t, uint16) \ - MACRO(int32_t, int32) \ - MACRO(uint32_t, uint32) \ - MACRO(int64_t, int64) \ - MACRO(uint64_t, uint64) \ - MACRO(float, float) \ - MACRO(double, double) \ - MACRO(long double, ldouble) \ - MACRO(std::complex, cfloat) \ +#define ADIOS2_FOREACH_PRIMITVE_STDTYPE_2ARGS(MACRO) \ + MACRO(int8_t, int8) \ + MACRO(char, char) \ + MACRO(uint8_t, uint8) \ + MACRO(int16_t, int16) \ + MACRO(uint16_t, uint16) \ + MACRO(int32_t, int32) \ + MACRO(uint32_t, uint32) \ + MACRO(int64_t, int64) \ + MACRO(uint64_t, uint64) \ + MACRO(float, float) \ + MACRO(double, double) \ + MACRO(long double, ldouble) \ + MACRO(std::complex, cfloat) \ MACRO(std::complex, cdouble) -#define ADIOS2_FOREACH_MINMAX_STDTYPE_2ARGS(MACRO) \ - MACRO(int8_t, int8) \ - MACRO(uint8_t, uint8) \ - MACRO(int16_t, int16) \ - MACRO(uint16_t, uint16) \ - MACRO(int32_t, int32) \ - MACRO(uint32_t, uint32) \ - MACRO(int64_t, int64) \ - MACRO(uint64_t, uint64) \ - MACRO(float, float) \ - MACRO(double, double) \ +#define ADIOS2_FOREACH_MINMAX_STDTYPE_2ARGS(MACRO) \ + MACRO(int8_t, int8) \ + MACRO(uint8_t, uint8) \ + MACRO(int16_t, int16) \ + MACRO(uint16_t, uint16) \ + MACRO(int32_t, int32) \ + MACRO(uint32_t, uint32) \ + MACRO(int64_t, int64) \ + MACRO(uint64_t, uint64) \ + MACRO(float, float) \ + MACRO(double, double) \ MACRO(long double, ldouble) -#define ADIOS2_FOREACH_STDTYPE_2ARGS(MACRO) \ - ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_2ARGS(MACRO) +#define ADIOS2_FOREACH_STDTYPE_2ARGS(MACRO) ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_2ARGS(MACRO) -#define ADIOS2_CLASS_iterator \ - class iterator \ - { \ - public: \ - typedef iterator self_type; \ - typedef T value_type; \ - typedef T &reference; \ - typedef T *pointer; \ - typedef std::forward_iterator_tag iterator_category; \ - typedef int difference_type; \ - iterator(pointer ptr) : ptr_(ptr) {} \ - self_type operator++() \ - { \ - self_type i = *this; \ - ptr_++; \ - return i; \ - } \ - self_type operator++(int junk) \ - { \ - ptr_++; \ - return *this; \ - } \ - reference operator*() { return *ptr_; } \ - pointer operator->() { return ptr_; } \ - bool operator==(const self_type &rhs) { return ptr_ == rhs.ptr_; } \ - bool operator!=(const self_type &rhs) { return ptr_ != rhs.ptr_; } \ - \ - private: \ - pointer ptr_; \ +#define ADIOS2_CLASS_iterator \ + class iterator \ + { \ + public: \ + typedef iterator self_type; \ + typedef T value_type; \ + typedef T &reference; \ + typedef T *pointer; \ + typedef std::forward_iterator_tag iterator_category; \ + typedef int difference_type; \ + iterator(pointer ptr) : ptr_(ptr) {} \ + self_type operator++() \ + { \ + self_type i = *this; \ + ptr_++; \ + return i; \ + } \ + self_type operator++(int junk) \ + { \ + ptr_++; \ + return *this; \ + } \ + reference operator*() { return *ptr_; } \ + pointer operator->() { return ptr_; } \ + bool operator==(const self_type &rhs) { return ptr_ == rhs.ptr_; } \ + bool operator!=(const self_type &rhs) { return ptr_ != rhs.ptr_; } \ + \ + private: \ + pointer ptr_; \ } -#define ADIOS2_iterators_functions(DATA_FUNCTION, SIZE_FUNCTION) \ - iterator begin() noexcept { return iterator(DATA_FUNCTION); } \ +#define ADIOS2_iterators_functions(DATA_FUNCTION, SIZE_FUNCTION) \ + iterator begin() noexcept { return iterator(DATA_FUNCTION); } \ iterator end() noexcept { return iterator(DATA_FUNCTION + SIZE_FUNCTION); } #endif /* ADIOS2_ADIOSMACROS_H */ diff --git a/source/adios2/common/ADIOSTypes.cpp b/source/adios2/common/ADIOSTypes.cpp index 6bf3c2198b..824fcfa083 100644 --- a/source/adios2/common/ADIOSTypes.cpp +++ b/source/adios2/common/ADIOSTypes.cpp @@ -316,49 +316,38 @@ void MinMaxStruct::Dump(DataType Type) case DataType::None: break; case DataType::Int8: - std::cout << "Min : " << MinUnion.field_int8 - << ", Max : " << MaxUnion.field_int8; + std::cout << "Min : " << MinUnion.field_int8 << ", Max : " << MaxUnion.field_int8; break; case DataType::Int16: - std::cout << "Min : " << MinUnion.field_int16 - << ", Max : " << MaxUnion.field_int16; + std::cout << "Min : " << MinUnion.field_int16 << ", Max : " << MaxUnion.field_int16; break; case DataType::Int32: - std::cout << "Min : " << MinUnion.field_int32 - << ", Max : " << MaxUnion.field_int32; + std::cout << "Min : " << MinUnion.field_int32 << ", Max : " << MaxUnion.field_int32; break; case DataType::Int64: - std::cout << "Min : " << MinUnion.field_int64 - << ", Max : " << MaxUnion.field_int64; + std::cout << "Min : " << MinUnion.field_int64 << ", Max : " << MaxUnion.field_int64; break; case DataType::Char: case DataType::UInt8: - std::cout << "Min : " << MinUnion.field_uint8 - << ", Max : " << MaxUnion.field_uint8; + std::cout << "Min : " << MinUnion.field_uint8 << ", Max : " << MaxUnion.field_uint8; break; case DataType::UInt16: - std::cout << "Min : " << MinUnion.field_uint16 - << ", Max : " << MaxUnion.field_uint16; + std::cout << "Min : " << MinUnion.field_uint16 << ", Max : " << MaxUnion.field_uint16; break; case DataType::UInt32: - std::cout << "Min : " << MinUnion.field_uint32 - << ", Max : " << MaxUnion.field_uint32; + std::cout << "Min : " << MinUnion.field_uint32 << ", Max : " << MaxUnion.field_uint32; break; case DataType::UInt64: - std::cout << "Min : " << MinUnion.field_uint64 - << ", Max : " << MaxUnion.field_uint64; + std::cout << "Min : " << MinUnion.field_uint64 << ", Max : " << MaxUnion.field_uint64; break; case DataType::Float: - std::cout << "Min : " << MinUnion.field_float - << ", Max : " << MaxUnion.field_float; + std::cout << "Min : " << MinUnion.field_float << ", Max : " << MaxUnion.field_float; break; case DataType::Double: - std::cout << "Min : " << MinUnion.field_double - << ", Max : " << MaxUnion.field_double; + std::cout << "Min : " << MinUnion.field_double << ", Max : " << MaxUnion.field_double; break; case DataType::LongDouble: - std::cout << "Min : " << MinUnion.field_ldouble - << ", Max : " << MaxUnion.field_ldouble; + std::cout << "Min : " << MinUnion.field_ldouble << ", Max : " << MaxUnion.field_ldouble; break; case DataType::FloatComplex: case DataType::DoubleComplex: diff --git a/source/adios2/core/ADIOS.cpp b/source/adios2/core/ADIOS.cpp index bea3efa61d..3e058c9f20 100644 --- a/source/adios2/core/ADIOS.cpp +++ b/source/adios2/core/ADIOS.cpp @@ -75,8 +75,7 @@ class ADIOS::GlobalServices { if (!isAWSInitialized) { - options.loggingOptions.logLevel = - Aws::Utils::Logging::LogLevel::Debug; + options.loggingOptions.logLevel = Aws::Utils::Logging::LogLevel::Debug; Aws::InitAPI(options); isAWSInitialized = true; } @@ -106,10 +105,8 @@ ADIOS::GlobalServices ADIOS::m_GlobalServices; std::mutex PerfStubsMutex; static std::atomic_uint adios_refcount(0); -ADIOS::ADIOS(const std::string configFile, helper::Comm comm, - const std::string hostLanguage) -: m_HostLanguage(hostLanguage), m_Comm(std::move(comm)), - m_ConfigFile(configFile) +ADIOS::ADIOS(const std::string configFile, helper::Comm comm, const std::string hostLanguage) +: m_HostLanguage(hostLanguage), m_Comm(std::move(comm)), m_ConfigFile(configFile) { ++adios_refcount; #ifdef PERFSTUBS_USE_TIMERS @@ -129,15 +126,13 @@ ADIOS::ADIOS(const std::string configFile, helper::Comm comm, if (!adios2sys::SystemTools::FileExists(configFile)) { helper::Throw("Core", "ADIOS", "ADIOS", - "config file " + configFile + - " not found"); + "config file " + configFile + " not found"); } if (helper::EndsWith(configFile, ".xml")) { XMLInit(configFile); } - else if (helper::EndsWith(configFile, ".yaml") || - helper::EndsWith(configFile, ".yml")) + else if (helper::EndsWith(configFile, ".yaml") || helper::EndsWith(configFile, ".yml")) { YAMLInit(configFile); } @@ -157,10 +152,7 @@ ADIOS::ADIOS(helper::Comm comm, const std::string hostLanguage) { } -ADIOS::ADIOS(const std::string hostLanguage) -: ADIOS("", helper::CommDummy(), hostLanguage) -{ -} +ADIOS::ADIOS(const std::string hostLanguage) : ADIOS("", helper::CommDummy(), hostLanguage) {} ADIOS::~ADIOS() { @@ -187,14 +179,13 @@ IO &ADIOS::DeclareIO(const std::string name, const ArrayOrdering ArrayOrder) } else { - helper::Throw( - "Core", "ADIOS", "DeclareIO", "IO " + name + " declared twice"); + helper::Throw("Core", "ADIOS", "DeclareIO", + "IO " + name + " declared twice"); } } - auto ioPair = m_IOs.emplace( - std::piecewise_construct, std::forward_as_tuple(name), - std::forward_as_tuple(*this, name, false, m_HostLanguage)); + auto ioPair = m_IOs.emplace(std::piecewise_construct, std::forward_as_tuple(name), + std::forward_as_tuple(*this, name, false, m_HostLanguage)); IO &io = ioPair.first->second; io.SetDeclared(); io.SetArrayOrder(ArrayOrder); @@ -208,16 +199,14 @@ IO &ADIOS::AtIO(const std::string name) if (itIO == m_IOs.end()) { helper::Throw("Core", "ADIOS", "AtIO", - "IO " + name + - " being used is not declared"); + "IO " + name + " being used is not declared"); } else { if (!itIO->second.IsDeclared()) { - helper::Throw( - "Core", "ADIOS", "AtIO", - "IO " + name + " being used is not declared"); + helper::Throw("Core", "ADIOS", "AtIO", + "IO " + name + " being used is not declared"); } } @@ -253,9 +242,8 @@ void ADIOS::ExitComputationBlock() noexcept } } -std::pair &ADIOS::DefineOperator(const std::string &name, - const std::string type, - const Params ¶meters) +std::pair & +ADIOS::DefineOperator(const std::string &name, const std::string type, const Params ¶meters) { CheckOperator(name); MakeOperator(type, parameters); @@ -263,8 +251,7 @@ std::pair &ADIOS::DefineOperator(const std::string &name, return m_Operators[name]; } -std::pair * -ADIOS::InquireOperator(const std::string &name) noexcept +std::pair *ADIOS::InquireOperator(const std::string &name) noexcept { auto it = m_Operators.find(name); if (it == m_Operators.end()) @@ -295,8 +282,7 @@ void ADIOS::CheckOperator(const std::string name) const if (m_Operators.count(name) == 1) { helper::Throw("Core", "ADIOS", "CheckOperator", - "Operator " + name + - " defined twice"); + "Operator " + name + " defined twice"); } } diff --git a/source/adios2/core/ADIOS.h b/source/adios2/core/ADIOS.h index 986f804871..1e514ca051 100644 --- a/source/adios2/core/ADIOS.h +++ b/source/adios2/core/ADIOS.h @@ -49,8 +49,7 @@ class ADIOS * @param mpiComm MPI communicator from application, make sure is valid * through the scope of adios2 calls */ - ADIOS(const std::string configFile, helper::Comm comm, - const std::string hostLanguage); + ADIOS(const std::string configFile, helper::Comm comm, const std::string hostLanguage); /** * @brief Constructor for non-MPI applications WITH a XML config file (it @@ -87,8 +86,7 @@ class ADIOS * @exception std::invalid_argument if IO with unique name is already * declared */ - IO &DeclareIO(const std::string name, - const ArrayOrdering ArrayOrder = ArrayOrdering::Auto); + IO &DeclareIO(const std::string name, const ArrayOrdering ArrayOrder = ArrayOrdering::Auto); /** * Retrieve a reference to an existing IO object created with DeclareIO. @@ -120,17 +118,15 @@ class ADIOS * @exception std::invalid_argument if Operator with unique name is already * defined */ - std::pair & - DefineOperator(const std::string &name, const std::string type, - const Params ¶meters = Params()); + std::pair &DefineOperator(const std::string &name, const std::string type, + const Params ¶meters = Params()); /** * Retrieve a reference pointer to an existing Operator object * created with DefineOperator. * @return if IO exists returns a reference to existing IO object inside * ADIOS, otherwise a nullptr */ - std::pair * - InquireOperator(const std::string &name) noexcept; + std::pair *InquireOperator(const std::string &name) noexcept; /* * StructDefinitions are defined using the operators in the IO, diff --git a/source/adios2/core/Attribute.h b/source/adios2/core/Attribute.h index 5775fb1218..efd41f8fca 100644 --- a/source/adios2/core/Attribute.h +++ b/source/adios2/core/Attribute.h @@ -50,8 +50,7 @@ class Attribute : public AttributeBase * @param elements * @param allowModifications */ - Attribute(const std::string &name, const T &data, - const bool allowModification); + Attribute(const std::string &name, const T &data, const bool allowModification); ~Attribute() = default; @@ -67,8 +66,7 @@ class Attribute : public AttributeBase private: std::string DoGetInfoValue() const noexcept override; - bool DoEqual(const void *values, - const size_t elements) const noexcept override; + bool DoEqual(const void *values, const size_t elements) const noexcept override; }; } // end namespace core diff --git a/source/adios2/core/Attribute.tcc b/source/adios2/core/Attribute.tcc index 1520b81ec6..9e63eb1d71 100644 --- a/source/adios2/core/Attribute.tcc +++ b/source/adios2/core/Attribute.tcc @@ -44,15 +44,13 @@ struct Pad::value>::type> }; template -struct Pad>::value>::type> +struct Pad< + T, typename std::enable_if>::value>::type> { static void Zero(T &arg) { - Pad::Zero( - reinterpret_cast(arg)[0]); - Pad::Zero( - reinterpret_cast(arg)[1]); + Pad::Zero(reinterpret_cast(arg)[0]); + Pad::Zero(reinterpret_cast(arg)[1]); } }; } @@ -75,8 +73,8 @@ Attribute::Attribute(const Attribute &other) } template -Attribute::Attribute(const std::string &name, const T *array, - const size_t elements, const bool allowModification) +Attribute::Attribute(const std::string &name, const T *array, const size_t elements, + const bool allowModification) : AttributeBase(name, helper::GetDataType(), elements, allowModification) { m_DataArray = std::vector(array, array + elements); @@ -84,8 +82,7 @@ Attribute::Attribute(const std::string &name, const T *array, } template -Attribute::Attribute(const std::string &name, const T &value, - const bool allowModification) +Attribute::Attribute(const std::string &name, const T &value, const bool allowModification) : AttributeBase(name, helper::GetDataType(), allowModification) { m_DataArray.clear(); @@ -105,9 +102,9 @@ void Attribute::Modify(const T *data, const size_t elements) } else { - helper::Throw( - "Core", "Attribute", "Modify", - "Attribute " + this->m_Name + " being modified is not modifiable"); + helper::Throw("Core", "Attribute", "Modify", + "Attribute " + this->m_Name + + " being modified is not modifiable"); } } @@ -124,9 +121,9 @@ void Attribute::Modify(const T &data) } else { - helper::Throw( - "Core", "Attribute", "Modify", - "Attribute " + this->m_Name + " being modified is not modifiable"); + helper::Throw("Core", "Attribute", "Modify", + "Attribute " + this->m_Name + + " being modified is not modifiable"); } } @@ -146,8 +143,7 @@ std::string Attribute::DoGetInfoValue() const noexcept } template -bool Attribute::DoEqual(const void *values, - const size_t elements) const noexcept +bool Attribute::DoEqual(const void *values, const size_t elements) const noexcept { if (m_Elements != elements) { diff --git a/source/adios2/core/AttributeBase.cpp b/source/adios2/core/AttributeBase.cpp index b6b74cedc4..38d9601768 100644 --- a/source/adios2/core/AttributeBase.cpp +++ b/source/adios2/core/AttributeBase.cpp @@ -22,8 +22,7 @@ AttributeBase::AttributeBase(const std::string &name, const DataType type, { } -AttributeBase::AttributeBase(const std::string &name, const DataType type, - const size_t elements, +AttributeBase::AttributeBase(const std::string &name, const DataType type, const size_t elements, const bool allowModification) : m_Name(name), m_Type(type), m_Elements(elements), m_IsSingleValue(false), m_AllowModification(allowModification) @@ -40,8 +39,7 @@ Params AttributeBase::GetInfo() const noexcept return info; } -bool AttributeBase::Equals(const void *values, - const size_t elements) const noexcept +bool AttributeBase::Equals(const void *values, const size_t elements) const noexcept { return this->DoEqual(values, elements); } diff --git a/source/adios2/core/AttributeBase.h b/source/adios2/core/AttributeBase.h index fd65681b4c..a060727960 100644 --- a/source/adios2/core/AttributeBase.h +++ b/source/adios2/core/AttributeBase.h @@ -38,8 +38,7 @@ class AttributeBase * @param name * @param type */ - AttributeBase(const std::string &name, const DataType type, - const bool allowModification); + AttributeBase(const std::string &name, const DataType type, const bool allowModification); /** * Array constructor used by Attribute derived class @@ -47,8 +46,8 @@ class AttributeBase * @param type * @param elements */ - AttributeBase(const std::string &name, const DataType type, - const size_t elements, const bool allowModification); + AttributeBase(const std::string &name, const DataType type, const size_t elements, + const bool allowModification); virtual ~AttributeBase() = default; @@ -62,8 +61,7 @@ class AttributeBase private: virtual std::string DoGetInfoValue() const noexcept = 0; - virtual bool DoEqual(const void *values, - const size_t elements) const noexcept = 0; + virtual bool DoEqual(const void *values, const size_t elements) const noexcept = 0; }; } // end namespace core diff --git a/source/adios2/core/CoreTypes.h b/source/adios2/core/CoreTypes.h index 3f6eae7bcb..dc0b15f9b0 100644 --- a/source/adios2/core/CoreTypes.h +++ b/source/adios2/core/CoreTypes.h @@ -34,9 +34,8 @@ struct iovec }; typedef std::chrono::duration Seconds; -typedef std::chrono::time_point< - std::chrono::steady_clock, - std::chrono::duration> +typedef std::chrono::time_point> TimePoint; inline TimePoint Now() { return std::chrono::steady_clock::now(); } diff --git a/source/adios2/core/Engine.cpp b/source/adios2/core/Engine.cpp index ab9c1706d8..ab0a5e1761 100644 --- a/source/adios2/core/Engine.cpp +++ b/source/adios2/core/Engine.cpp @@ -21,10 +21,9 @@ namespace adios2 namespace core { -Engine::Engine(const std::string engineType, IO &io, const std::string &name, - const Mode openMode, helper::Comm comm) -: m_EngineType(engineType), m_IO(io), m_Name(name), m_OpenMode(openMode), - m_Comm(std::move(comm)) +Engine::Engine(const std::string engineType, IO &io, const std::string &name, const Mode openMode, + helper::Comm comm) +: m_EngineType(engineType), m_IO(io), m_Name(name), m_OpenMode(openMode), m_Comm(std::move(comm)) { m_FailVerbose = (m_Comm.Rank() == 0); } @@ -93,8 +92,7 @@ void Engine::DestructorClose(bool Verbose) noexcept { if (Verbose) { - std::cerr << "Engine \"" << m_Name - << "\" destroyed without a prior Close()." << std::endl; + std::cerr << "Engine \"" << m_Name << "\" destroyed without a prior Close()." << std::endl; std::cerr << "This may have negative consequences." << std::endl; } }; @@ -103,17 +101,11 @@ void Engine::Flush(const int /*transportIndex*/) { ThrowUp("Flush"); } size_t Engine::Steps() const { return DoSteps(); } -void Engine::LockWriterDefinitions() noexcept -{ - m_WriterDefinitionsLocked = true; -} +void Engine::LockWriterDefinitions() noexcept { m_WriterDefinitionsLocked = true; } bool Engine::BetweenStepPairs() const { return m_BetweenStepPairs; } -void Engine::LockReaderSelections() noexcept -{ - m_ReaderSelectionsLocked = true; -} +void Engine::LockReaderSelections() noexcept { m_ReaderSelectionsLocked = true; } size_t Engine::DebugGetDataBufferSize() const { @@ -134,17 +126,15 @@ void Engine::Put(VariableStruct &variable, const void *data, const Mode launch) DoPutStructSync(variable, data); break; default: - helper::Throw( - "Core", "Engine", "Put", - "invalid launch Mode for variable " + variable.m_Name + - ", only Mode::Deferred and Mode::Sync are valid"); + helper::Throw("Core", "Engine", "Put", + "invalid launch Mode for variable " + variable.m_Name + + ", only Mode::Deferred and Mode::Sync are valid"); } } void Engine::Get(VariableStruct &variable, void *data, const Mode launch) { - CommonChecks(variable, data, {Mode::Read, Mode::ReadRandomAccess}, - "in call to Get"); + CommonChecks(variable, data, {Mode::Read, Mode::ReadRandomAccess}, "in call to Get"); switch (launch) { @@ -155,10 +145,9 @@ void Engine::Get(VariableStruct &variable, void *data, const Mode launch) DoGetStructSync(variable, data); break; default: - helper::Throw( - "Core", "Engine", "Get", - "invalid launch Mode for variable " + variable.m_Name + - ", only Mode::Deferred and Mode::Sync are valid"); + helper::Throw("Core", "Engine", "Get", + "invalid launch Mode for variable " + variable.m_Name + + ", only Mode::Deferred and Mode::Sync are valid"); } } @@ -173,8 +162,7 @@ void Engine::InitTransports() {} void Engine::NotifyEngineAttribute(std::string name, DataType type) noexcept {} // if not overriden, default to name/type version -void Engine::NotifyEngineAttribute(std::string name, AttributeBase *attr, - void *Data) noexcept +void Engine::NotifyEngineAttribute(std::string name, AttributeBase *attr, void *Data) noexcept { NotifyEngineAttribute(name, attr->m_Type); } @@ -182,53 +170,31 @@ void Engine::NotifyEngineAttribute(std::string name, AttributeBase *attr, void Engine::NotifyEngineNoVarsQuery() {} // DoPut* -#define declare_type(T) \ - void Engine::DoPut(Variable &, typename Variable::Span &, \ - const bool, const T &) \ - { \ - ThrowUp("DoPut"); \ +#define declare_type(T) \ + void Engine::DoPut(Variable &, typename Variable::Span &, const bool, const T &) \ + { \ + ThrowUp("DoPut"); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type -#define declare_type(T) \ - void Engine::DoPutSync(Variable &, const T *) { ThrowUp("DoPutSync"); } \ - void Engine::DoPutDeferred(Variable &, const T *) \ - { \ - ThrowUp("DoPutDeferred"); \ - } +#define declare_type(T) \ + void Engine::DoPutSync(Variable &, const T *) { ThrowUp("DoPutSync"); } \ + void Engine::DoPutDeferred(Variable &, const T *) { ThrowUp("DoPutDeferred"); } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type -void Engine::DoPutStructSync(VariableStruct &, const void *) -{ - ThrowUp("DoPutStructSync"); -} -void Engine::DoPutStructDeferred(VariableStruct &, const void *) -{ - ThrowUp("DoPutStructDeferred"); -} +void Engine::DoPutStructSync(VariableStruct &, const void *) { ThrowUp("DoPutStructSync"); } +void Engine::DoPutStructDeferred(VariableStruct &, const void *) { ThrowUp("DoPutStructDeferred"); } // DoGet* -#define declare_type(T) \ - void Engine::DoGetSync(Variable &, T *) { ThrowUp("DoGetSync"); } \ - void Engine::DoGetDeferred(Variable &, T *) \ - { \ - ThrowUp("DoGetDeferred"); \ - } \ - typename Variable::BPInfo *Engine::DoGetBlockSync(Variable &v) \ - { \ - return nullptr; \ - } \ - typename Variable::BPInfo *Engine::DoGetBlockDeferred(Variable &v) \ - { \ - return nullptr; \ - } +#define declare_type(T) \ + void Engine::DoGetSync(Variable &, T *) { ThrowUp("DoGetSync"); } \ + void Engine::DoGetDeferred(Variable &, T *) { ThrowUp("DoGetDeferred"); } \ + typename Variable::BPInfo *Engine::DoGetBlockSync(Variable &v) { return nullptr; } \ + typename Variable::BPInfo *Engine::DoGetBlockDeferred(Variable &v) { return nullptr; } -void Engine::RegisterCreatedVariable(const VariableBase *var) -{ - m_CreatedVars.insert(var); -} +void Engine::RegisterCreatedVariable(const VariableBase *var) { m_CreatedVars.insert(var); } void Engine::RemoveCreatedVars() { @@ -239,8 +205,7 @@ void Engine::RemoveCreatedVars() m_CreatedVars.clear(); } -void Engine::DoGetAbsoluteSteps(const VariableBase &variable, - std::vector &keys) const +void Engine::DoGetAbsoluteSteps(const VariableBase &variable, std::vector &keys) const { ThrowUp("DoGetAbsoluteSteps"); return; @@ -249,35 +214,32 @@ void Engine::DoGetAbsoluteSteps(const VariableBase &variable, ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type -void Engine::DoGetStructSync(VariableStruct &, void *) -{ - ThrowUp("DoGetSync for Struct Variable"); -} +void Engine::DoGetStructSync(VariableStruct &, void *) { ThrowUp("DoGetSync for Struct Variable"); } void Engine::DoGetStructDeferred(VariableStruct &, void *) { ThrowUp("DoGetDeferred for Struct Variable"); } -#define declare_type(T) \ - std::map::BPInfo>> \ - Engine::DoAllStepsBlocksInfo(const Variable &variable) const \ - { \ - ThrowUp("DoAllStepsBlocksInfo"); \ - return std::map::BPInfo>>(); \ - } \ - \ - std::vector::BPInfo>> \ - Engine::DoAllRelativeStepsBlocksInfo(const Variable &variable) const \ - { \ - ThrowUp("DoAllRelativeStepsBlocksInfo"); \ - return std::vector::BPInfo>>(); \ - } \ - \ - std::vector::BPInfo> Engine::DoBlocksInfo( \ - const Variable &variable, const size_t step) const \ - { \ - ThrowUp("DoBlocksInfo"); \ - return std::vector::BPInfo>(); \ +#define declare_type(T) \ + std::map::BPInfo>> Engine::DoAllStepsBlocksInfo( \ + const Variable &variable) const \ + { \ + ThrowUp("DoAllStepsBlocksInfo"); \ + return std::map::BPInfo>>(); \ + } \ + \ + std::vector::BPInfo>> Engine::DoAllRelativeStepsBlocksInfo( \ + const Variable &variable) const \ + { \ + ThrowUp("DoAllRelativeStepsBlocksInfo"); \ + return std::vector::BPInfo>>(); \ + } \ + \ + std::vector::BPInfo> Engine::DoBlocksInfo(const Variable &variable, \ + const size_t step) const \ + { \ + ThrowUp("DoBlocksInfo"); \ + return std::vector::BPInfo>(); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) @@ -297,21 +259,19 @@ Engine::DoAllRelativeStepsBlocksInfoStruct(const VariableStruct &variable) const return std::vector>(); } -std::vector -Engine::DoBlocksInfoStruct(const VariableStruct &variable, - const size_t step) const +std::vector Engine::DoBlocksInfoStruct(const VariableStruct &variable, + const size_t step) const { ThrowUp("DoBlocksInfo"); return std::vector(); } -#define declare_type(T, L) \ - T *Engine::DoBufferData_##L(const int bufferIdx, \ - const size_t payloadPosition, \ - const size_t bufferID) noexcept \ - { \ - T *data = nullptr; \ - return data; \ +#define declare_type(T, L) \ + T *Engine::DoBufferData_##L(const int bufferIdx, const size_t payloadPosition, \ + const size_t bufferID) noexcept \ + { \ + T *data = nullptr; \ + return data; \ } ADIOS2_FOREACH_PRIMITVE_STDTYPE_2ARGS(declare_type) @@ -326,35 +286,29 @@ size_t Engine::DoSteps() const // PRIVATE void Engine::ThrowUp(const std::string function) const { - helper::Throw("Core", "Engine", "ThrowUp", - "Engine " + m_EngineType + - " does not support " + function); + helper::Throw( + "Core", "Engine", "ThrowUp", "Engine " + m_EngineType + " does not support " + function); } -void Engine::CheckOpenModes(const std::set &modes, - const std::string hint) const +void Engine::CheckOpenModes(const std::set &modes, const std::string hint) const { if (modes.count(m_OpenMode) == 0) { helper::Throw("Core", "Engine", "CheckOpenModes", - "Engine open mode not valid for " + - hint); + "Engine open mode not valid for " + hint); } } -void Engine::CommonChecks(VariableBase &variable, const void *data, - const std::set &modes, +void Engine::CommonChecks(VariableBase &variable, const void *data, const std::set &modes, const std::string hint) const { variable.CheckDimensions(hint); CheckOpenModes(modes, " for variable " + variable.m_Name + ", " + hint); // If no dimension has a zero count then there must be data to write. - if (std::find(variable.m_Count.begin(), variable.m_Count.end(), 0) == - variable.m_Count.end()) + if (std::find(variable.m_Count.begin(), variable.m_Count.end(), 0) == variable.m_Count.end()) { - helper::CheckForNullptr( - data, "for data argument in non-zero count block, " + hint); + helper::CheckForNullptr(data, "for data argument in non-zero count block, " + hint); } } @@ -370,57 +324,51 @@ Engine::AllRelativeStepsBlocksInfoStruct(const VariableStruct &variable) const return DoAllRelativeStepsBlocksInfoStruct(variable); } -std::vector -Engine::BlocksInfoStruct(const VariableStruct &variable, - const size_t step) const +std::vector Engine::BlocksInfoStruct(const VariableStruct &variable, + const size_t step) const { return DoBlocksInfoStruct(variable, step); } // PUBLIC TEMPLATE FUNCTIONS EXPANSION WITH SCOPED TYPES -#define declare_template_instantiation(T) \ - \ - template void Engine::Put(Variable &, const T *, const Mode); \ - template void Engine::Put(const std::string &, const T *, const Mode); \ - \ - template void Engine::Put(Variable &, const T &, const Mode); \ - template void Engine::Put(const std::string &, const T &, const Mode); \ - \ - template void Engine::Get(Variable &, T *, const Mode); \ - template void Engine::Get(const std::string &, T *, const Mode); \ - \ - template void Engine::Get(Variable &, T &, const Mode); \ - template void Engine::Get(const std::string &, T &, const Mode); \ - \ - template void Engine::Get(Variable &, std::vector &, const Mode); \ - template void Engine::Get(const std::string &, std::vector &, \ - const Mode); \ - \ - template typename Variable::BPInfo *Engine::Get(Variable &, \ - const Mode); \ - template typename Variable::BPInfo *Engine::Get(const std::string &, \ - const Mode); \ - \ - template Variable &Engine::FindVariable( \ - const std::string &variableName, const std::string hint); \ - \ - template std::map::BPInfo>> \ - Engine::AllStepsBlocksInfo(const Variable &) const; \ - \ - template std::vector::BPInfo>> \ - Engine::AllRelativeStepsBlocksInfo(const Variable &) const; \ - \ - template std::vector::BPInfo> Engine::BlocksInfo( \ - const Variable &, const size_t) const; \ - template std::vector Engine::GetAbsoluteSteps(const Variable &) \ - const; +#define declare_template_instantiation(T) \ + \ + template void Engine::Put(Variable &, const T *, const Mode); \ + template void Engine::Put(const std::string &, const T *, const Mode); \ + \ + template void Engine::Put(Variable &, const T &, const Mode); \ + template void Engine::Put(const std::string &, const T &, const Mode); \ + \ + template void Engine::Get(Variable &, T *, const Mode); \ + template void Engine::Get(const std::string &, T *, const Mode); \ + \ + template void Engine::Get(Variable &, T &, const Mode); \ + template void Engine::Get(const std::string &, T &, const Mode); \ + \ + template void Engine::Get(Variable &, std::vector &, const Mode); \ + template void Engine::Get(const std::string &, std::vector &, const Mode); \ + \ + template typename Variable::BPInfo *Engine::Get(Variable &, const Mode); \ + template typename Variable::BPInfo *Engine::Get(const std::string &, const Mode); \ + \ + template Variable &Engine::FindVariable(const std::string &variableName, \ + const std::string hint); \ + \ + template std::map::BPInfo>> \ + Engine::AllStepsBlocksInfo(const Variable &) const; \ + \ + template std::vector::BPInfo>> \ + Engine::AllRelativeStepsBlocksInfo(const Variable &) const; \ + \ + template std::vector::BPInfo> Engine::BlocksInfo(const Variable &, \ + const size_t) const; \ + template std::vector Engine::GetAbsoluteSteps(const Variable &) const; ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation -#define declare_template_instantiation(T) \ - template typename Variable::Span &Engine::Put(Variable &, \ - const bool, const T &); \ +#define declare_template_instantiation(T) \ + template typename Variable::Span &Engine::Put(Variable &, const bool, const T &); \ template void Engine::Get(core::Variable &, T **) const; ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_template_instantiation) diff --git a/source/adios2/core/Engine.h b/source/adios2/core/Engine.h index f91e264b68..5e2a721cae 100644 --- a/source/adios2/core/Engine.h +++ b/source/adios2/core/Engine.h @@ -44,8 +44,7 @@ namespace core class Engine { public: - using AdvanceAsyncCallback = - std::function)>; + using AdvanceAsyncCallback = std::function)>; public: /** from derived class */ @@ -68,8 +67,8 @@ class Engine * @param mode open mode from ADIOSTypes.h Mode * @param comm communicator passed at Open or from ADIOS class */ - Engine(const std::string engineType, IO &io, const std::string &name, - const Mode mode, helper::Comm comm); + Engine(const std::string engineType, IO &io, const std::string &name, const Mode mode, + helper::Comm comm); virtual ~Engine(); @@ -96,8 +95,7 @@ class Engine * @param timeoutSeconds (not yet implemented) * @return current step status */ - virtual StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = -1.0); + virtual StepStatus BeginStep(StepMode mode, const float timeoutSeconds = -1.0); /** * Returns current step information for each engine. @@ -121,8 +119,8 @@ class Engine * application */ template - typename Variable::Span & - Put(Variable &variable, const bool initialize, const T &value = T{}); + typename Variable::Span &Put(Variable &variable, const bool initialize, + const T &value = T{}); /** * @brief Put associates variable and data into adios2 in Engine Write mode. @@ -143,11 +141,9 @@ class Engine * */ template - void Put(Variable &variable, const T *data, - const Mode launch = Mode::Deferred); + void Put(Variable &variable, const T *data, const Mode launch = Mode::Deferred); - void Put(VariableStruct &variable, const void *data, - const Mode launch = Mode::Deferred); + void Put(VariableStruct &variable, const void *data, const Mode launch = Mode::Deferred); /** * @brief Put version that accepts a variable name as input parameter. @@ -169,8 +165,7 @@ class Engine * */ template - void Put(const std::string &variableName, const T *data, - const Mode launch = Mode::Deferred); + void Put(const std::string &variableName, const T *data, const Mode launch = Mode::Deferred); /** * Put version for single value datum, can accept on-the-fly values @@ -202,8 +197,7 @@ class Engine * */ template - void Put(const std::string &variableName, const T &datum, - const Mode launch); + void Put(const std::string &variableName, const T &datum, const Mode launch); /** * @brief Get associates an existing variable selections and populates data @@ -228,11 +222,9 @@ class Engine * */ template - void Get(Variable &variable, T *data, - const Mode launch = Mode::Deferred); + void Get(Variable &variable, T *data, const Mode launch = Mode::Deferred); - void Get(VariableStruct &variable, void *data, - const Mode launch = Mode::Deferred); + void Get(VariableStruct &variable, void *data, const Mode launch = Mode::Deferred); /** * @brief Get version that accepts a variableName as input. @@ -256,8 +248,7 @@ class Engine * */ template - void Get(const std::string &variableName, T *data, - const Mode launch = Mode::Deferred); + void Get(const std::string &variableName, T *data, const Mode launch = Mode::Deferred); /** * @brief Get version for single value datum @@ -268,8 +259,7 @@ class Engine * @param datum to be populated with corresponding value */ template - void Get(Variable &variable, T &datum, - const Mode launch = Mode::Deferred); + void Get(Variable &variable, T &datum, const Mode launch = Mode::Deferred); /** * @brief Get version for single value datum using variable name @@ -278,8 +268,7 @@ class Engine * @param datum to be populated with corresponding value */ template - void Get(const std::string &variableName, T &datum, - const Mode launch = Mode::Deferred); + void Get(const std::string &variableName, T &datum, const Mode launch = Mode::Deferred); /** * Convenience function, C++ only that allocates and populates a vector with @@ -289,8 +278,7 @@ class Engine * @param launch */ template - void Get(Variable &variable, std::vector &dataV, - const Mode launch = Mode::Deferred); + void Get(Variable &variable, std::vector &dataV, const Mode launch = Mode::Deferred); /** * Convenience function, C++ only that allocates and populates a vector with @@ -329,8 +317,7 @@ class Engine * */ template - typename Variable::BPInfo *Get(Variable &variable, - const Mode launch = Mode::Deferred); + typename Variable::BPInfo *Get(Variable &variable, const Mode launch = Mode::Deferred); /** * @brief Get version for block selection that accepts a variableName as @@ -438,11 +425,11 @@ class Engine * found it returns an empty vector */ template - std::vector::BPInfo> - BlocksInfo(const Variable &variable, const size_t step) const; + std::vector::BPInfo> BlocksInfo(const Variable &variable, + const size_t step) const; - std::vector - BlocksInfoStruct(const VariableStruct &variable, const size_t step) const; + std::vector BlocksInfoStruct(const VariableStruct &variable, + const size_t step) const; /** * Get the absolute steps of a variable in a file. This is for @@ -479,31 +466,26 @@ class Engine virtual size_t DebugGetDataBufferSize() const; // in this call, Step is RELATIVE, not absolute - virtual MinVarInfo *MinBlocksInfo(const VariableBase &, - const size_t Step) const + virtual MinVarInfo *MinBlocksInfo(const VariableBase &, const size_t Step) const { return nullptr; } // in this call, Step is RELATIVE, not absolute - virtual bool VarShape(const VariableBase &, const size_t Step, - Dims &Shape) const + virtual bool VarShape(const VariableBase &, const size_t Step, Dims &Shape) const { return false; } - virtual bool VariableMinMax(const VariableBase &, const size_t Step, - MinMaxStruct &MinMax) + virtual bool VariableMinMax(const VariableBase &, const size_t Step, MinMaxStruct &MinMax) { return false; } /** Notify the engine when a new attribute is defined. Called from IO.tcc */ - virtual void NotifyEngineAttribute(std::string name, - DataType type) noexcept; - virtual void NotifyEngineAttribute(std::string name, AttributeBase *attr, - void *Data) noexcept; + virtual void NotifyEngineAttribute(std::string name, DataType type) noexcept; + virtual void NotifyEngineAttribute(std::string name, AttributeBase *attr, void *Data) noexcept; /** Notify the engine when InquireVariable is called when the IO is empty. * Called from IO.tcc @@ -542,15 +524,14 @@ class Engine virtual void InitTransports(); // Put -#define declare_type(T) \ - virtual void DoPut(Variable &variable, \ - typename Variable::Span &span, \ +#define declare_type(T) \ + virtual void DoPut(Variable &variable, typename Variable::Span &span, \ const bool initialize, const T &value); ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type -#define declare_type(T) \ - virtual void DoPutSync(Variable &, const T *); \ +#define declare_type(T) \ + virtual void DoPutSync(Variable &, const T *); \ virtual void DoPutDeferred(Variable &, const T *); ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -559,10 +540,10 @@ class Engine virtual void DoPutStructDeferred(VariableStruct &, const void *); // Get -#define declare_type(T) \ - virtual void DoGetSync(Variable &, T *); \ - virtual void DoGetDeferred(Variable &, T *); \ - virtual typename Variable::BPInfo *DoGetBlockSync(Variable &); \ +#define declare_type(T) \ + virtual void DoGetSync(Variable &, T *); \ + virtual void DoGetDeferred(Variable &, T *); \ + virtual typename Variable::BPInfo *DoGetBlockSync(Variable &); \ virtual typename Variable::BPInfo *DoGetBlockDeferred(Variable &); ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -593,18 +574,17 @@ class Engine * @return Variable& reference if found, else throws an exception */ template - Variable &FindVariable(const std::string &variableName, - const std::string hint); - -#define declare_type(T) \ - virtual std::map::BPInfo>> \ - DoAllStepsBlocksInfo(const Variable &variable) const; \ - \ - virtual std::vector::BPInfo>> \ - DoAllRelativeStepsBlocksInfo(const Variable &variable) const; \ - \ - virtual std::vector::BPInfo> DoBlocksInfo( \ - const Variable &variable, const size_t step) const; + Variable &FindVariable(const std::string &variableName, const std::string hint); + +#define declare_type(T) \ + virtual std::map::BPInfo>> DoAllStepsBlocksInfo( \ + const Variable &variable) const; \ + \ + virtual std::vector::BPInfo>> DoAllRelativeStepsBlocksInfo( \ + const Variable &variable) const; \ + \ + virtual std::vector::BPInfo> DoBlocksInfo(const Variable &variable, \ + const size_t step) const; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -615,12 +595,11 @@ class Engine virtual std::vector> DoAllRelativeStepsBlocksInfoStruct(const VariableStruct &variable) const; - virtual std::vector - DoBlocksInfoStruct(const VariableStruct &variable, const size_t step) const; + virtual std::vector DoBlocksInfoStruct(const VariableStruct &variable, + const size_t step) const; -#define declare_type(T, L) \ - virtual T *DoBufferData_##L(const int bufferIdx, \ - const size_t payloadPosition, \ +#define declare_type(T, L) \ + virtual T *DoBufferData_##L(const int bufferIdx, const size_t payloadPosition, \ const size_t bufferID) noexcept; ADIOS2_FOREACH_PRIMITVE_STDTYPE_2ARGS(declare_type) @@ -628,8 +607,7 @@ class Engine virtual size_t DoSteps() const; - virtual void DoGetAbsoluteSteps(const VariableBase &variable, - std::vector &keys) const; + virtual void DoGetAbsoluteSteps(const VariableBase &variable, std::vector &keys) const; /** true: No more definitions or changes to existing variables are allowed */ @@ -657,8 +635,7 @@ class Engine * @param modes acceptable modes * @param hint extra exception info */ - void CommonChecks(VariableBase &variable, const void *data, - const std::set &modes, + void CommonChecks(VariableBase &variable, const void *data, const std::set &modes, const std::string hint) const; /** @@ -667,8 +644,7 @@ class Engine * @param modes acceptable modes * @param hint extra exception info */ - void CheckOpenModes(const std::set &modes, - const std::string hint) const; + void CheckOpenModes(const std::set &modes, const std::string hint) const; }; } // end namespace core diff --git a/source/adios2/core/Engine.tcc b/source/adios2/core/Engine.tcc index 19c80601a5..b06050b86c 100644 --- a/source/adios2/core/Engine.tcc +++ b/source/adios2/core/Engine.tcc @@ -24,12 +24,11 @@ namespace core { template -typename Variable::Span &Engine::Put(Variable &variable, - const bool initialize, const T &value) +typename Variable::Span &Engine::Put(Variable &variable, const bool initialize, + const T &value) { CheckOpenModes({{Mode::Write, Mode::Append}}, - " for variable " + variable.m_Name + - ", in call to Variable::Span Put"); + " for variable " + variable.m_Name + ", in call to Variable::Span Put"); if (!variable.m_Operations.empty()) { helper::Throw( @@ -39,8 +38,7 @@ typename Variable::Span &Engine::Put(Variable &variable, } auto itSpan = variable.m_BlocksSpan.emplace( - variable.m_BlocksInfo.size(), - typename Variable::Span(*this, variable.TotalSize())); + variable.m_BlocksInfo.size(), typename Variable::Span(*this, variable.TotalSize())); DoPut(variable, itSpan.first->second, initialize, value); return itSpan.first->second; } @@ -59,16 +57,14 @@ void Engine::Put(Variable &variable, const T *data, const Mode launch) DoPutSync(variable, data); break; default: - helper::Throw( - "Core", "Engine", "Put", - "invalid launch Mode for variable " + variable.m_Name + - ", only Mode::Deferred and Mode::Sync are valid"); + helper::Throw("Core", "Engine", "Put", + "invalid launch Mode for variable " + variable.m_Name + + ", only Mode::Deferred and Mode::Sync are valid"); } } template -void Engine::Put(const std::string &variableName, const T *data, - const Mode launch) +void Engine::Put(const std::string &variableName, const T *data, const Mode launch) { Put(FindVariable(variableName, "in call to Put"), data, launch); } @@ -81,20 +77,17 @@ void Engine::Put(Variable &variable, const T &datum, const Mode /*launch*/) } template -void Engine::Put(const std::string &variableName, const T &datum, - const Mode /*launch*/) +void Engine::Put(const std::string &variableName, const T &datum, const Mode /*launch*/) { const T datumLocal = datum; - Put(FindVariable(variableName, "in call to Put"), &datumLocal, - Mode::Sync); + Put(FindVariable(variableName, "in call to Put"), &datumLocal, Mode::Sync); } // Get template void Engine::Get(Variable &variable, T *data, const Mode launch) { - CommonChecks(variable, data, {Mode::Read, Mode::ReadRandomAccess}, - "in call to Get"); + CommonChecks(variable, data, {Mode::Read, Mode::ReadRandomAccess}, "in call to Get"); switch (launch) { @@ -105,10 +98,9 @@ void Engine::Get(Variable &variable, T *data, const Mode launch) DoGetSync(variable, data); break; default: - helper::Throw( - "Core", "Engine", "Get", - "invalid launch Mode for variable " + variable.m_Name + - ", only Mode::Deferred and Mode::Sync are valid"); + helper::Throw("Core", "Engine", "Get", + "invalid launch Mode for variable " + variable.m_Name + + ", only Mode::Deferred and Mode::Sync are valid"); } } @@ -131,8 +123,7 @@ void Engine::Get(const std::string &variableName, T &datum, const Mode launch) } template -void Engine::Get(Variable &variable, std::vector &dataV, - const Mode launch) +void Engine::Get(Variable &variable, std::vector &dataV, const Mode launch) { const size_t dataSize = variable.SelectionSize(); helper::Resize(dataV, dataSize, "in call to Get with std::vector argument"); @@ -142,33 +133,28 @@ void Engine::Get(Variable &variable, std::vector &dataV, template void Engine::Get(core::Variable &variable, T **data) const { - const auto *eng = - dynamic_cast(this); + const auto *eng = dynamic_cast(this); if (eng) { eng->Get(variable, data); } else { - helper::Throw( - "Core", "Engine", "Get", - "Engine " + m_EngineType + - " does not support Get(core::Variable&, T**)"); + helper::Throw("Core", "Engine", "Get", + "Engine " + m_EngineType + + " does not support Get(core::Variable&, T**)"); } } template -void Engine::Get(const std::string &variableName, std::vector &dataV, - const Mode launch) +void Engine::Get(const std::string &variableName, std::vector &dataV, const Mode launch) { - Get(FindVariable(variableName, "in Get with std::vector argument"), - dataV, launch); + Get(FindVariable(variableName, "in Get with std::vector argument"), dataV, launch); } // Get template -typename Variable::BPInfo *Engine::Get(Variable &variable, - const Mode launch) +typename Variable::BPInfo *Engine::Get(Variable &variable, const Mode launch) { typename Variable::BPInfo *info = nullptr; switch (launch) @@ -180,10 +166,9 @@ typename Variable::BPInfo *Engine::Get(Variable &variable, info = DoGetBlockSync(variable); break; default: - helper::Throw( - "Core", "Engine", "Get", - "invalid launch Mode for variable " + variable.m_Name + - ", only Mode::Deferred and Mode::Sync are valid"); + helper::Throw("Core", "Engine", "Get", + "invalid launch Mode for variable " + variable.m_Name + + ", only Mode::Deferred and Mode::Sync are valid"); } CommonChecks(variable, info->Data, {Mode::Read}, "in call to Get"); @@ -192,8 +177,7 @@ typename Variable::BPInfo *Engine::Get(Variable &variable, } template -typename Variable::BPInfo *Engine::Get(const std::string &variableName, - const Mode launch) +typename Variable::BPInfo *Engine::Get(const std::string &variableName, const Mode launch) { return Get(FindVariable(variableName, "in call to Get"), launch); } @@ -213,8 +197,8 @@ Engine::AllRelativeStepsBlocksInfo(const Variable &variable) const } template -std::vector::BPInfo> -Engine::BlocksInfo(const Variable &variable, const size_t step) const +std::vector::BPInfo> Engine::BlocksInfo(const Variable &variable, + const size_t step) const { return DoBlocksInfo(variable, step); } @@ -237,27 +221,25 @@ std::vector Engine::GetAbsoluteSteps(const Variable &variable) const return keys; } -#define declare_type(T, L) \ - template <> \ - T *Engine::BufferData(const int bufferIdx, const size_t payloadPosition, \ - const size_t bufferID) noexcept \ - { \ - return DoBufferData_##L(bufferIdx, payloadPosition, bufferID); \ +#define declare_type(T, L) \ + template <> \ + T *Engine::BufferData(const int bufferIdx, const size_t payloadPosition, \ + const size_t bufferID) noexcept \ + { \ + return DoBufferData_##L(bufferIdx, payloadPosition, bufferID); \ } ADIOS2_FOREACH_PRIMITVE_STDTYPE_2ARGS(declare_type) #undef declare_type // PROTECTED template -Variable &Engine::FindVariable(const std::string &variableName, - const std::string hint) +Variable &Engine::FindVariable(const std::string &variableName, const std::string hint) { Variable *variable = m_IO.InquireVariable(variableName); if (variable == nullptr) { helper::Throw("Core", "Engine", "FindVariable", - "variable " + variableName + - " not found in IO " + + "variable " + variableName + " not found in IO " + m_IO.m_Name + ", " + hint); } return *variable; diff --git a/source/adios2/core/Group.cpp b/source/adios2/core/Group.cpp index a07c718c2f..64ee09d0a5 100644 --- a/source/adios2/core/Group.cpp +++ b/source/adios2/core/Group.cpp @@ -64,8 +64,7 @@ void Group::BuildTree() const core::VarMap &variables = m_IO.GetVariables(); for (const auto &variablePair : variables) { - std::vector tokens = - split(variablePair.first, groupDelimiter); + std::vector tokens = split(variablePair.first, groupDelimiter); // Adding artificial root element if (tokens[0] == "") tokens[0] = ADIOS_root; @@ -90,8 +89,7 @@ void Group::BuildTree() const core::AttrMap &attributes = m_IO.GetAttributes(); for (const auto &attributePair : attributes) { - std::vector tokens = - split(attributePair.first, groupDelimiter); + std::vector tokens = split(attributePair.first, groupDelimiter); if (tokens.size() > 1) { std::string key = tokens[0]; @@ -115,13 +113,12 @@ std::vector Group::AvailableVariables() std::vector available_variables; for (auto const &v : val) { - if (mapPtr->treeMap.find(currentPath + groupDelimiter + v) == - mapPtr->treeMap.end()) + if (mapPtr->treeMap.find(currentPath + groupDelimiter + v) == mapPtr->treeMap.end()) { const core::VarMap &variables = m_IO.GetVariables(); std::string variablePath = currentPath + groupDelimiter + v; - variablePath = variablePath.substr( - ADIOS_root.size() + 1, variablePath.size() - ADIOS_root.size()); + variablePath = + variablePath.substr(ADIOS_root.size() + 1, variablePath.size() - ADIOS_root.size()); if (variables.find(variablePath) != variables.end()) { available_variables.push_back(v); @@ -140,13 +137,12 @@ std::vector Group::AvailableAttributes() std::vector available_attributes; for (auto const &v : val) { - if (mapPtr->treeMap.find(currentPath + groupDelimiter + v) == - mapPtr->treeMap.end()) + if (mapPtr->treeMap.find(currentPath + groupDelimiter + v) == mapPtr->treeMap.end()) { const core::AttrMap &attributes = m_IO.GetAttributes(); std::string variablePath = currentPath + groupDelimiter + v; - variablePath = variablePath.substr( - ADIOS_root.size() + 1, variablePath.size() - ADIOS_root.size()); + variablePath = + variablePath.substr(ADIOS_root.size() + 1, variablePath.size() - ADIOS_root.size()); if (attributes.find(variablePath) != attributes.end()) { available_attributes.push_back(v); @@ -164,8 +160,7 @@ std::vector Group::AvailableGroups() std::set val = mapPtr->treeMap[currentPath]; for (auto const &v : val) { - if (mapPtr->treeMap.find(currentPath + groupDelimiter + v) != - mapPtr->treeMap.end()) + if (mapPtr->treeMap.find(currentPath + groupDelimiter + v) != mapPtr->treeMap.end()) available_groups.push_back(v); } return available_groups; @@ -185,16 +180,14 @@ DataType Group::InquireVariableType(const std::string &name) const noexcept return m_IO.InquireVariableType(currentPath + groupDelimiter + name); } -DataType Group::InquireAttributeType(const std::string &name, - const std::string &variableName, +DataType Group::InquireAttributeType(const std::string &name, const std::string &variableName, const std::string separator) const noexcept { return m_IO.InquireAttributeType(name, variableName, separator); } // Explicitly instantiate the necessary public template implementations -#define define_template_instantiation(T) \ - template Variable *Group::InquireVariable( \ - const std::string &) noexcept; +#define define_template_instantiation(T) \ + template Variable *Group::InquireVariable(const std::string &) noexcept; ADIOS2_FOREACH_STDTYPE_1ARG(define_template_instantiation) #undef define_template_instatiation diff --git a/source/adios2/core/Group.h b/source/adios2/core/Group.h index c15207797f..ef8df3536c 100644 --- a/source/adios2/core/Group.h +++ b/source/adios2/core/Group.h @@ -20,8 +20,7 @@ namespace adios2 namespace core { /** used for Variables and Attributes, name, type, type-index */ -using DataMap = - std::unordered_map>; +using DataMap = std::unordered_map>; class Group { private: @@ -124,8 +123,7 @@ class Group * found */ template - Attribute *InquireAttribute(const std::string &name, - const std::string &variableName = "", + Attribute *InquireAttribute(const std::string &name, const std::string &variableName = "", const std::string separator = "/") noexcept; /** * @brief Returns the type of an existing variable as an string. A wrapper @@ -141,10 +139,8 @@ class Group * @param name input attribute name * @return type if found returns type as string, otherwise an empty string */ - DataType - InquireAttributeType(const std::string &name, - const std::string &variableName = "", - const std::string separator = "/") const noexcept; + DataType InquireAttributeType(const std::string &name, const std::string &variableName = "", + const std::string separator = "/") const noexcept; }; } // end namespace core diff --git a/source/adios2/core/Group.tcc b/source/adios2/core/Group.tcc index 3741e7d701..cedd297a95 100644 --- a/source/adios2/core/Group.tcc +++ b/source/adios2/core/Group.tcc @@ -21,22 +21,20 @@ template Variable *Group::InquireVariable(const std::string &name) noexcept { std::string variablePath = currentPath + groupDelimiter + name; - variablePath = variablePath.substr(ADIOS_root.size() + 1, - variablePath.size() - ADIOS_root.size()); + variablePath = + variablePath.substr(ADIOS_root.size() + 1, variablePath.size() - ADIOS_root.size()); Variable &variable = *m_IO.InquireVariable(variablePath); return &variable; } template -Attribute *Group::InquireAttribute(const std::string &name, - const std::string &variableName, +Attribute *Group::InquireAttribute(const std::string &name, const std::string &variableName, const std::string separator) noexcept { std::string variablePath = currentPath + groupDelimiter + name; - variablePath = variablePath.substr(ADIOS_root.size() + 1, - variablePath.size() - ADIOS_root.size()); - Attribute &attribute = - m_IO.InquireAttribute(variablePath, variableName, separator); + variablePath = + variablePath.substr(ADIOS_root.size() + 1, variablePath.size() - ADIOS_root.size()); + Attribute &attribute = m_IO.InquireAttribute(variablePath, variableName, separator); return &attribute; } } // end namespace core diff --git a/source/adios2/core/IO.cpp b/source/adios2/core/IO.cpp index acb28e645b..89764aa71b 100644 --- a/source/adios2/core/IO.cpp +++ b/source/adios2/core/IO.cpp @@ -66,10 +66,8 @@ IO::EngineFactoryEntry IO_MakeEngine_HDF5(); namespace { std::unordered_map Factory = { - {"bp3", - {IO::MakeEngine, IO::MakeEngine}}, - {"bp4", - {IO::MakeEngine, IO::MakeEngine}}, + {"bp3", {IO::MakeEngine, IO::MakeEngine}}, + {"bp4", {IO::MakeEngine, IO::MakeEngine}}, {"bp5", #ifdef ADIOS2_HAVE_BP5 {IO::MakeEngine, IO::MakeEngine} @@ -80,8 +78,7 @@ std::unordered_map Factory = { }, {"dataman", #ifdef ADIOS2_HAVE_DATAMAN - {IO::MakeEngine, - IO::MakeEngine} + {IO::MakeEngine, IO::MakeEngine} #else IO::NoEngineEntry("ERROR: this version didn't compile with " "DataMan library, can't use DataMan engine\n") @@ -121,9 +118,8 @@ std::unordered_map Factory = { "Sst library, can't use Sst engine\n") #endif }, - {"dataspaces", - IO::NoEngineEntry("ERROR: this version didn't compile with " - "DataSpaces library, can't use DataSpaces engine\n")}, + {"dataspaces", IO::NoEngineEntry("ERROR: this version didn't compile with " + "DataSpaces library, can't use DataSpaces engine\n")}, {"hdf5", #ifdef ADIOS2_HAVE_HDF5 IO_MakeEngine_HDF5() @@ -132,20 +128,13 @@ std::unordered_map Factory = { "HDF5 library, can't use HDF5 engine\n") #endif }, - {"skeleton", - {IO::MakeEngine, - IO::MakeEngine}}, - {"inline", - {IO::MakeEngine, - IO::MakeEngine}}, - {"null", - {IO::MakeEngine, IO::MakeEngine}}, + {"skeleton", {IO::MakeEngine, IO::MakeEngine}}, + {"inline", {IO::MakeEngine, IO::MakeEngine}}, + {"null", {IO::MakeEngine, IO::MakeEngine}}, {"nullcore", {IO::NoEngine("ERROR: nullcore engine does not support read mode"), IO::MakeEngine}}, - {"plugin", - {IO::MakeEngine, - IO::MakeEngine}}, + {"plugin", {IO::MakeEngine, IO::MakeEngine}}, }; // Synchronize access to the factory in case one thread is @@ -162,8 +151,7 @@ FactoryLookup(std::string const &name) struct ThrowError { - std::shared_ptr operator()(IO &, const std::string &, const Mode, - helper::Comm) const + std::shared_ptr operator()(IO &, const std::string &, const Mode, helper::Comm) const { helper::Throw("Core", "IO", "Operator", Err); return nullptr; @@ -175,10 +163,7 @@ struct ThrowError IO::MakeEngineFunc IO::NoEngine(std::string e) { return ThrowError{e}; } -IO::EngineFactoryEntry IO::NoEngineEntry(std::string e) -{ - return {NoEngine(e), NoEngine(e)}; -} +IO::EngineFactoryEntry IO::NoEngineEntry(std::string e) { return {NoEngine(e), NoEngine(e)}; } void IO::RegisterEngine(const std::string &engineType, EngineFactoryEntry entry) { @@ -188,8 +173,7 @@ void IO::RegisterEngine(const std::string &engineType, EngineFactoryEntry entry) IO::IO(ADIOS &adios, const std::string name, const bool inConfigFile, const std::string hostLanguage) -: m_ADIOS(adios), m_Name(name), m_HostLanguage(hostLanguage), - m_InConfigFile(inConfigFile) +: m_ADIOS(adios), m_Name(name), m_HostLanguage(hostLanguage), m_InConfigFile(inConfigFile) { } @@ -197,16 +181,14 @@ IO::~IO() = default; void IO::SetEngine(const std::string engineType) noexcept { - auto lf_InsertParam = [&](const std::string &key, - const std::string &value) { + auto lf_InsertParam = [&](const std::string &key, const std::string &value) { m_Parameters.insert(std::pair(key, value)); }; /* First step in handling virtual engine names */ std::string finalEngineType; std::string engineTypeLC = engineType; - std::transform(engineTypeLC.begin(), engineTypeLC.end(), - engineTypeLC.begin(), ::tolower); + std::transform(engineTypeLC.begin(), engineTypeLC.end(), engineTypeLC.begin(), ::tolower); if (engineTypeLC == "insituviz" || engineTypeLC == "insituvisualization") { finalEngineType = "SST"; @@ -262,8 +244,7 @@ void IO::SetParameters(const Params ¶meters) noexcept void IO::SetParameters(const std::string ¶meters) { PERFSTUBS_SCOPED_TIMER("IO::other"); - adios2::Params parameterMap = - adios2::helper::BuildParametersMap(parameters, '=', ','); + adios2::Params parameterMap = adios2::helper::BuildParametersMap(parameters, '=', ','); SetParameters(parameterMap); } @@ -286,8 +267,7 @@ size_t IO::AddTransport(const std::string type, const Params ¶meters) PERFSTUBS_SCOPED_TIMER("IO::other"); Params parametersMap(parameters); - if (parameters.count("transport") == 1 || - parameters.count("Transport") == 1) + if (parameters.count("transport") == 1 || parameters.count("Transport") == 1) { helper::Throw( "Core", "IO", "AddTransport", @@ -302,16 +282,15 @@ size_t IO::AddTransport(const std::string type, const Params ¶meters) return m_TransportsParameters.size() - 1; } -void IO::SetTransportParameter(const size_t transportIndex, - const std::string key, const std::string value) +void IO::SetTransportParameter(const size_t transportIndex, const std::string key, + const std::string value) { PERFSTUBS_SCOPED_TIMER("IO::other"); if (transportIndex >= m_TransportsParameters.size()) { - helper::Throw( - "Core", "IO", "SetTransportParameter", - "transport Index " + std::to_string(transportIndex) + - " does not exist"); + helper::Throw("Core", "IO", "SetTransportParameter", + "transport Index " + std::to_string(transportIndex) + + " does not exist"); } m_TransportsParameters[transportIndex][key] = value; @@ -391,8 +370,7 @@ void IO::RemoveAllAttributes() noexcept m_Attributes.clear(); } -std::map -IO::GetAvailableVariables(const std::set &keys) noexcept +std::map IO::GetAvailableVariables(const std::set &keys) noexcept { PERFSTUBS_SCOPED_TIMER("IO::GetAvailableVariables"); @@ -405,10 +383,10 @@ IO::GetAvailableVariables(const std::set &keys) noexcept if (type == DataType::Struct) { } -#define declare_template_instantiation(T) \ - else if (type == helper::GetDataType()) \ - { \ - variablesInfo[variableName] = GetVariableInfo(variableName, keys); \ +#define declare_template_instantiation(T) \ + else if (type == helper::GetDataType()) \ + { \ + variablesInfo[variableName] = GetVariableInfo(variableName, keys); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -417,10 +395,9 @@ IO::GetAvailableVariables(const std::set &keys) noexcept return variablesInfo; } -std::map -IO::GetAvailableAttributes(const std::string &variableName, - const std::string separator, - const bool fullNameKeys) noexcept +std::map IO::GetAvailableAttributes(const std::string &variableName, + const std::string separator, + const bool fullNameKeys) noexcept { PERFSTUBS_SCOPED_TIMER("IO::GetAvailableAttributes"); std::map attributesInfo; @@ -435,8 +412,7 @@ IO::GetAvailableAttributes(const std::string &variableName, } else { - attributesInfo = itVariable->second->GetAttributesInfo( - *this, separator, fullNameKeys); + attributesInfo = itVariable->second->GetAttributesInfo(*this, separator, fullNameKeys); } return attributesInfo; } @@ -464,8 +440,7 @@ DataType IO::InquireVariableType(const std::string &name) const noexcept return InquireVariableType(itVariable); } -DataType -IO::InquireVariableType(const VarMap::const_iterator itVariable) const noexcept +DataType IO::InquireVariableType(const VarMap::const_iterator itVariable) const noexcept { if (itVariable == m_Variables.end()) { @@ -491,13 +466,11 @@ IO::InquireVariableType(const VarMap::const_iterator itVariable) const noexcept return type; } -DataType IO::InquireAttributeType(const std::string &name, - const std::string &variableName, +DataType IO::InquireAttributeType(const std::string &name, const std::string &variableName, const std::string separator) const noexcept { PERFSTUBS_SCOPED_TIMER("IO::other"); - const std::string globalName = - helper::GlobalName(name, variableName, separator); + const std::string globalName = helper::GlobalName(name, variableName, separator); auto itAttribute = m_Attributes.find(globalName); if (itAttribute == m_Attributes.end()) @@ -508,8 +481,7 @@ DataType IO::InquireAttributeType(const std::string &name, return itAttribute->second->m_Type; } -void IO::AddOperation(const std::string &variable, - const std::string &operatorType, +void IO::AddOperation(const std::string &variable, const std::string &operatorType, const Params ¶meters) noexcept { PERFSTUBS_SCOPED_TIMER("IO::other"); @@ -536,8 +508,8 @@ Engine &IO::Open(const std::string &name, const Mode mode, helper::Comm comm) { if (isEngineActive) // check if active { - helper::Throw( - "Core", "IO", "Open", "Engine " + name + " is opened twice"); + helper::Throw("Core", "IO", "Open", + "Engine " + name + " is opened twice"); } } @@ -554,23 +526,21 @@ Engine &IO::Open(const std::string &name, const Mode mode, helper::Comm comm) std::string engineTypeLC = m_EngineType; if (!isDefaultEngine) { - std::transform(engineTypeLC.begin(), engineTypeLC.end(), - engineTypeLC.begin(), ::tolower); + std::transform(engineTypeLC.begin(), engineTypeLC.end(), engineTypeLC.begin(), ::tolower); } /* Second step in handling virtual engines */ /* BPFile for read needs to use BP5, BP4, or BP3 depending on the file's * version */ - if ((engineTypeLC == "file" || engineTypeLC == "bpfile" || - engineTypeLC == "bp" || isDefaultEngine)) + if ((engineTypeLC == "file" || engineTypeLC == "bpfile" || engineTypeLC == "bp" || + isDefaultEngine)) { if (helper::EndsWith(name, ".h5", false)) { engineTypeLC = "hdf5"; } - else if ((mode_to_use == Mode::Read) || - (mode_to_use == Mode::ReadRandomAccess)) + else if ((mode_to_use == Mode::Read) || (mode_to_use == Mode::ReadRandomAccess)) { if (adios2sys::SystemTools::FileIsDirectory(name)) { @@ -593,8 +563,7 @@ Engine &IO::Open(const std::string &name, const Mode mode, helper::Comm comm) /* We need to figure out the type of file * from the file itself */ - if (helper::IsHDF5File(name, *this, comm, - m_TransportsParameters)) + if (helper::IsHDF5File(name, *this, comm, m_TransportsParameters)) { engineTypeLC = "hdf5"; } @@ -640,23 +609,20 @@ Engine &IO::Open(const std::string &name, const Mode mode, helper::Comm comm) { if (mode_to_use == Mode::Append) { - helper::Throw( - "Core", "IO", "Open", - "Append mode is not supported in the inline engine."); + helper::Throw("Core", "IO", "Open", + "Append mode is not supported in the inline engine."); } // See inline.rst:44 if (mode_to_use == Mode::Sync) { - helper::Throw( - "Core", "IO", "Open", - "Sync mode is not supported in the inline engine."); + helper::Throw("Core", "IO", "Open", + "Sync mode is not supported in the inline engine."); } if (m_Engines.size() >= 2) { - std::string msg = - "Failed to add engine " + name + " to IO \'" + m_Name + "\'. "; + std::string msg = "Failed to add engine " + name + " to IO \'" + m_Name + "\'. "; msg += "An inline engine must have exactly one writer, and one " "reader. "; msg += "There are already two engines declared, so no more can be " @@ -670,10 +636,8 @@ Engine &IO::Open(const std::string &name, const Mode mode, helper::Comm comm) auto engine_ptr = m_Engines.begin()->second; if (engine_ptr->OpenMode() == mode_to_use) { - std::string msg = - "The previously added engine " + engine_ptr->m_Name + - " is already opened in same mode requested for " + name + - ". "; + std::string msg = "The previously added engine " + engine_ptr->m_Name + + " is already opened in same mode requested for " + name + ". "; msg += "The inline engine requires exactly one writer and one " "reader."; helper::Throw("Core", "IO", "Open", msg); @@ -684,31 +648,27 @@ Engine &IO::Open(const std::string &name, const Mode mode, helper::Comm comm) auto f = FactoryLookup(engineTypeLC); if (f != Factory.end()) { - if ((mode_to_use == Mode::Read) || - (mode_to_use == Mode::ReadRandomAccess)) + if ((mode_to_use == Mode::Read) || (mode_to_use == Mode::ReadRandomAccess)) { - engine = - f->second.MakeReader(*this, name, mode_to_use, std::move(comm)); + engine = f->second.MakeReader(*this, name, mode_to_use, std::move(comm)); } else { - engine = - f->second.MakeWriter(*this, name, mode_to_use, std::move(comm)); + engine = f->second.MakeWriter(*this, name, mode_to_use, std::move(comm)); } } else { helper::Throw("Core", "IO", "Open", - "Engine type " + m_EngineType + - " is not valid"); + "Engine type " + m_EngineType + " is not valid"); } auto itEngine = m_Engines.emplace(name, std::move(engine)); if (!itEngine.second) { - helper::Throw( - "Core", "IO", "Open", "failed to create Engine " + m_EngineType); + helper::Throw("Core", "IO", "Open", + "failed to create Engine " + m_EngineType); } // return a reference return *itEngine.first->second.get(); @@ -783,12 +743,10 @@ void IO::FlushAll() } } -void IO::ResetVariablesStepSelection(const bool zeroStart, - const std::string hint) +void IO::ResetVariablesStepSelection(const bool zeroStart, const std::string hint) { PERFSTUBS_SCOPED_TIMER("IO::other"); - for (auto itVariable = m_Variables.begin(); itVariable != m_Variables.end(); - ++itVariable) + for (auto itVariable = m_Variables.begin(); itVariable != m_Variables.end(); ++itVariable) { const DataType type = InquireVariableType(itVariable); @@ -815,13 +773,11 @@ void IO::SetPrefixedNames(const bool isStep) noexcept const std::set attributes = helper::KeysToSet(m_Attributes); const std::set variables = helper::KeysToSet(m_Variables); - for (auto itVariable = m_Variables.begin(); itVariable != m_Variables.end(); - ++itVariable) + for (auto itVariable = m_Variables.begin(); itVariable != m_Variables.end(); ++itVariable) { // if for each step (BP4), check if variable type is not empty // (means variable exist in that step) - const DataType type = isStep ? InquireVariableType(itVariable) - : itVariable->second->m_Type; + const DataType type = isStep ? InquireVariableType(itVariable) : itVariable->second->m_Type; if (type == DataType::None) { @@ -834,10 +790,8 @@ void IO::SetPrefixedNames(const bool isStep) noexcept else { VariableBase &variable = *itVariable->second; - variable.m_PrefixedVariables = - helper::PrefixMatches(variable.m_Name, variables); - variable.m_PrefixedAttributes = - helper::PrefixMatches(variable.m_Name, attributes); + variable.m_PrefixedVariables = helper::PrefixMatches(variable.m_Name, variables); + variable.m_PrefixedAttributes = helper::PrefixMatches(variable.m_Name, attributes); } } @@ -850,10 +804,9 @@ void IO::CheckAttributeCommon(const std::string &name) const auto itAttribute = m_Attributes.find(name); if (itAttribute != m_Attributes.end()) { - helper::Throw( - "Core", "IO", "CheckAttributeCommon", - "Attribute " + name + " exists in IO " + m_Name + - ", in call to DefineAttribute"); + helper::Throw("Core", "IO", "CheckAttributeCommon", + "Attribute " + name + " exists in IO " + m_Name + + ", in call to DefineAttribute"); } } @@ -871,15 +824,11 @@ void IO::CheckTransportType(const std::string type) const StructDefinition &IO::DefineStruct(const std::string &name, const size_t size) { - return m_ADIOS.m_StructDefinitions - .emplace(name, StructDefinition(name, size)) - ->second; + return m_ADIOS.m_StructDefinitions.emplace(name, StructDefinition(name, size))->second; } -VariableStruct &IO::DefineStructVariable(const std::string &name, - StructDefinition &def, - const Dims &shape, const Dims &start, - const Dims &count, +VariableStruct &IO::DefineStructVariable(const std::string &name, StructDefinition &def, + const Dims &shape, const Dims &start, const Dims &count, const bool constantDims) { @@ -889,18 +838,17 @@ VariableStruct &IO::DefineStructVariable(const std::string &name, auto itVariable = m_Variables.find(name); if (itVariable != m_Variables.end()) { - helper::Throw( - "Core", "IO", "DefineStructVariable", - "variable " + name + " already defined in IO " + m_Name); + helper::Throw("Core", "IO", "DefineStructVariable", + "variable " + name + " already defined in IO " + + m_Name); } } - auto itVariablePair = m_Variables.emplace( - name, std::unique_ptr(new VariableStruct( - name, def, shape, start, count, constantDims))); + auto itVariablePair = + m_Variables.emplace(name, std::unique_ptr(new VariableStruct( + name, def, shape, start, count, constantDims))); - VariableStruct &variable = - static_cast(*itVariablePair.first->second); + VariableStruct &variable = static_cast(*itVariablePair.first->second); // check IO placeholder for variable operations auto itOperations = m_VarOpsPlaceholder.find(name); @@ -943,8 +891,7 @@ VariableStruct *IO::InquireStructVariable(const std::string &name) noexcept return nullptr; } - VariableStruct *variable = - static_cast(itVariable->second.get()); + VariableStruct *variable = static_cast(itVariable->second.get()); if (m_ReadStreaming) { if (!variable->IsValidStep(m_EngineStep + 1)) @@ -955,8 +902,7 @@ VariableStruct *IO::InquireStructVariable(const std::string &name) noexcept return variable; } -VariableStruct *IO::InquireStructVariable(const std::string &name, - const StructDefinition &def, +VariableStruct *IO::InquireStructVariable(const std::string &name, const StructDefinition &def, const bool allowReorganize) noexcept { auto ret = InquireStructVariable(name); @@ -976,8 +922,7 @@ VariableStruct *IO::InquireStructVariable(const std::string &name, { return nullptr; } - if (ret->m_WriteStructDefinition->Offset(i) != def.Offset(i) && - !allowReorganize) + if (ret->m_WriteStructDefinition->Offset(i) != def.Offset(i) && !allowReorganize) { return nullptr; } @@ -985,8 +930,7 @@ VariableStruct *IO::InquireStructVariable(const std::string &name, { return nullptr; } - if (ret->m_WriteStructDefinition->ElementCount(i) != - def.ElementCount(i)) + if (ret->m_WriteStructDefinition->ElementCount(i) != def.ElementCount(i)) { return nullptr; } @@ -996,24 +940,22 @@ VariableStruct *IO::InquireStructVariable(const std::string &name, } // Explicitly instantiate the necessary public template implementations -#define define_template_instantiation(T) \ - template Variable &IO::DefineVariable(const std::string &, \ - const Dims &, const Dims &, \ - const Dims &, const bool); \ +#define define_template_instantiation(T) \ + template Variable &IO::DefineVariable(const std::string &, const Dims &, const Dims &, \ + const Dims &, const bool); \ template Variable *IO::InquireVariable(const std::string &) noexcept; ADIOS2_FOREACH_STDTYPE_1ARG(define_template_instantiation) #undef define_template_instatiation -#define declare_template_instantiation(T) \ - template Attribute &IO::DefineAttribute( \ - const std::string &, const T *, const size_t, const std::string &, \ - const std::string, const bool); \ - template Attribute &IO::DefineAttribute( \ - const std::string &, const T &, const std::string &, \ - const std::string, const bool); \ - template Attribute *IO::InquireAttribute( \ - const std::string &, const std::string &, const std::string) noexcept; +#define declare_template_instantiation(T) \ + template Attribute &IO::DefineAttribute(const std::string &, const T *, const size_t, \ + const std::string &, const std::string, \ + const bool); \ + template Attribute &IO::DefineAttribute( \ + const std::string &, const T &, const std::string &, const std::string, const bool); \ + template Attribute *IO::InquireAttribute(const std::string &, const std::string &, \ + const std::string) noexcept; ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation diff --git a/source/adios2/core/IO.h b/source/adios2/core/IO.h index f344b8fb4c..4d64982f3b 100644 --- a/source/adios2/core/IO.h +++ b/source/adios2/core/IO.h @@ -148,8 +148,7 @@ class IO * @param params acceptable parameters for a particular transport * @return transportIndex handler */ - size_t AddTransport(const std::string type, - const Params ¶meters = Params()); + size_t AddTransport(const std::string type, const Params ¶meters = Params()); /** * @brief Sets a single parameter to an existing transport identified with a @@ -159,8 +158,8 @@ class IO * @param key parameter key * @param value parameter value */ - void SetTransportParameter(const size_t transportIndex, - const std::string key, const std::string value); + void SetTransportParameter(const size_t transportIndex, const std::string key, + const std::string value); /** * @brief Define a Variable of primitive data type for current IO. @@ -177,15 +176,12 @@ class IO * defined */ template - Variable & - DefineVariable(const std::string &name, const Dims &shape = Dims(), - const Dims &start = Dims(), const Dims &count = Dims(), - const bool constantDims = false); - - VariableStruct &DefineStructVariable(const std::string &name, - StructDefinition &def, - const Dims &shape = Dims(), - const Dims &start = Dims(), + Variable &DefineVariable(const std::string &name, const Dims &shape = Dims(), + const Dims &start = Dims(), const Dims &count = Dims(), + const bool constantDims = false); + + VariableStruct &DefineStructVariable(const std::string &name, StructDefinition &def, + const Dims &shape = Dims(), const Dims &start = Dims(), const Dims &count = Dims(), const bool constantDims = false); @@ -202,8 +198,7 @@ class IO * defined */ template - Attribute &DefineAttribute(const std::string &name, const T *array, - const size_t elements, + Attribute &DefineAttribute(const std::string &name, const T *array, const size_t elements, const std::string &variableName = "", const std::string separator = "/", const bool allowModification = false); @@ -219,10 +214,9 @@ class IO * defined */ template - Attribute &DefineAttribute(const std::string &name, const T &value, - const std::string &variableName = "", - const std::string separator = "/", - const bool allowModification = false); + Attribute & + DefineAttribute(const std::string &name, const T &value, const std::string &variableName = "", + const std::string separator = "/", const bool allowModification = false); /** * @brief Removes an existing Variable in current IO object. @@ -268,8 +262,8 @@ class IO * keys: Type, Min, Max, Value, AvailableStepsStart, * AvailableStepsCount, Shape, Start, Count, SingleValue */ - std::map GetAvailableVariables( - const std::set &keys = std::set()) noexcept; + std::map + GetAvailableVariables(const std::set &keys = std::set()) noexcept; /** * @brief Gets an existing variable of primitive type by name @@ -282,9 +276,8 @@ class IO VariableStruct *InquireStructVariable(const std::string &name) noexcept; - VariableStruct * - InquireStructVariable(const std::string &name, const StructDefinition &def, - const bool allowReorganize = false) noexcept; + VariableStruct *InquireStructVariable(const std::string &name, const StructDefinition &def, + const bool allowReorganize = false) noexcept; StructDefinition &DefineStruct(const std::string &name, const size_t size); @@ -300,8 +293,7 @@ class IO * @param itVariable * @return type primitive type */ - DataType - InquireVariableType(const VarMap::const_iterator itVariable) const noexcept; + DataType InquireVariableType(const VarMap::const_iterator itVariable) const noexcept; /** * Retrieves hash holding internal variable identifiers @@ -330,8 +322,7 @@ class IO * found */ template - Attribute *InquireAttribute(const std::string &name, - const std::string &variableName = "", + Attribute *InquireAttribute(const std::string &name, const std::string &variableName = "", const std::string separator = "/") noexcept; /** @@ -339,10 +330,8 @@ class IO * @param name input attribute name * @return type if found returns type as string, otherwise an empty string */ - DataType - InquireAttributeType(const std::string &name, - const std::string &variableName = "", - const std::string separator = "/") const noexcept; + DataType InquireAttributeType(const std::string &name, const std::string &variableName = "", + const std::string separator = "/") const noexcept; /** * @brief Retrieve map with attributes info. Use when reading. @@ -380,8 +369,7 @@ class IO * @param operatorType * @param parameters */ - void AddOperation(const std::string &variable, - const std::string &operatorType, + void AddOperation(const std::string &variable, const std::string &operatorType, const Params ¶meters = Params()) noexcept; /** @@ -448,13 +436,12 @@ class IO * Resets all variables m_StepsStart and m_StepsCount * @param alwaysZero true: always m_StepsStart = 0, false: capture */ - void ResetVariablesStepSelection(const bool zeroStart = false, - const std::string hint = ""); + void ResetVariablesStepSelection(const bool zeroStart = false, const std::string hint = ""); void SetPrefixedNames(const bool isStep) noexcept; - using MakeEngineFunc = std::function( - IO &, const std::string &, const Mode, helper::Comm)>; + using MakeEngineFunc = + std::function(IO &, const std::string &, const Mode, helper::Comm)>; struct EngineFactoryEntry { MakeEngineFunc MakeReader; @@ -480,8 +467,7 @@ class IO * creating instances of EngineFactoryEntry for RegisterEngine. */ template - static std::shared_ptr MakeEngine(IO &io, const std::string &name, - const Mode mode, + static std::shared_ptr MakeEngine(IO &io, const std::string &name, const Mode mode, helper::Comm comm) { return std::make_shared(io, name, mode, std::move(comm)); @@ -491,17 +477,13 @@ class IO * Register an engine factory entry to create a reader or writer * for an engine of the given engine type (named in lower case). */ - static void RegisterEngine(const std::string &engineType, - EngineFactoryEntry entry); + static void RegisterEngine(const std::string &engineType, EngineFactoryEntry entry); /* * Return list of all engines associated with this IO. */ - const std::map> &GetEngines() const - { - return m_Engines; - } + const std::map> &GetEngines() const { return m_Engines; } /** Inform about computation block through User->ADIOS */ void EnterComputationBlock() noexcept; @@ -530,12 +512,10 @@ class IO void CheckTransportType(const std::string type) const; template - bool IsAvailableStep(const size_t step, - const unsigned int variableIndex) noexcept; + bool IsAvailableStep(const size_t step, const unsigned int variableIndex) noexcept; template - Params GetVariableInfo(const std::string &variableName, - const std::set &keys); + Params GetVariableInfo(const std::string &variableName, const std::set &keys); }; } // end namespace core diff --git a/source/adios2/core/IO.tcc b/source/adios2/core/IO.tcc index cd243be2a2..27a274993e 100644 --- a/source/adios2/core/IO.tcc +++ b/source/adios2/core/IO.tcc @@ -31,9 +31,8 @@ namespace core { template -Variable &IO::DefineVariable(const std::string &name, const Dims &shape, - const Dims &start, const Dims &count, - const bool constantDims) +Variable &IO::DefineVariable(const std::string &name, const Dims &shape, const Dims &start, + const Dims &count, const bool constantDims) { PERFSTUBS_SCOPED_TIMER("IO::DefineVariable"); @@ -41,18 +40,16 @@ Variable &IO::DefineVariable(const std::string &name, const Dims &shape, auto itVariable = m_Variables.find(name); if (itVariable != m_Variables.end()) { - helper::Throw( - "Core", "IO", "DefineVariable", - "variable " + name + " already defined in IO " + m_Name); + helper::Throw("Core", "IO", "DefineVariable", + "variable " + name + " already defined in IO " + + m_Name); } } - auto itVariablePair = m_Variables.emplace( - name, std::unique_ptr( - new Variable(name, shape, start, count, constantDims))); + auto itVariablePair = m_Variables.emplace(name, std::unique_ptr(new Variable( + name, shape, start, count, constantDims))); - Variable &variable = - static_cast &>(*itVariablePair.first->second); + Variable &variable = static_cast &>(*itVariablePair.first->second); // check IO placeholder for variable operations auto itOperations = m_VarOpsPlaceholder.find(name); @@ -91,8 +88,7 @@ Variable *IO::InquireVariable(const std::string &name) noexcept return nullptr; } - Variable *variable = - static_cast *>(itVariable->second.get()); + Variable *variable = static_cast *>(itVariable->second.get()); if (m_ReadStreaming) { if (!variable->IsValidStep(m_EngineStep + 1)) @@ -105,34 +101,28 @@ Variable *IO::InquireVariable(const std::string &name) noexcept template Attribute &IO::DefineAttribute(const std::string &name, const T &value, - const std::string &variableName, - const std::string separator, + const std::string &variableName, const std::string separator, const bool allowModification) { PERFSTUBS_SCOPED_TIMER("IO::DefineAttribute"); - if (!variableName.empty() && - InquireVariableType(variableName) == DataType::None) + if (!variableName.empty() && InquireVariableType(variableName) == DataType::None) { - helper::Throw( - "Core", "IO", "DefineAttribute", - "variable " + variableName + - " doesn't exist, can't associate attribute " + name + - ", in call to DefineAttribute"); + helper::Throw("Core", "IO", "DefineAttribute", + "variable " + variableName + + " doesn't exist, can't associate attribute " + + name + ", in call to DefineAttribute"); } - const std::string globalName = - helper::GlobalName(name, variableName, separator); + const std::string globalName = helper::GlobalName(name, variableName, separator); auto itExistingAttribute = m_Attributes.find(globalName); if (itExistingAttribute != m_Attributes.end()) { if (itExistingAttribute->second->m_Type == helper::GetDataType()) { - if (!itExistingAttribute->second->Equals( - static_cast(&value), 1)) + if (!itExistingAttribute->second->Equals(static_cast(&value), 1)) { - Attribute &a = - static_cast &>(*itExistingAttribute->second); + Attribute &a = static_cast &>(*itExistingAttribute->second); a.Modify(value); void *Data = &a.m_DataSingleValue; @@ -140,8 +130,8 @@ Attribute &IO::DefineAttribute(const std::string &name, const T &value, Data = a.m_DataArray.data(); for (auto &e : m_Engines) { - e.second->NotifyEngineAttribute( - globalName, itExistingAttribute->second.get(), Data); + e.second->NotifyEngineAttribute(globalName, itExistingAttribute->second.get(), + Data); } } } @@ -149,10 +139,8 @@ Attribute &IO::DefineAttribute(const std::string &name, const T &value, { helper::Throw( "Core", "IO", "DefineAttribute", - "modifiable attribute " + globalName + - " has been defined with type " + - ToString(itExistingAttribute->second->m_Type) + - ". Type cannot be changed to " + + "modifiable attribute " + globalName + " has been defined with type " + + ToString(itExistingAttribute->second->m_Type) + ". Type cannot be changed to " + ToString(helper::GetDataType())); } return static_cast &>(*itExistingAttribute->second); @@ -160,53 +148,45 @@ Attribute &IO::DefineAttribute(const std::string &name, const T &value, else { auto itAttributePair = m_Attributes.emplace( - globalName, std::unique_ptr(new Attribute( - globalName, value, allowModification))); + globalName, + std::unique_ptr(new Attribute(globalName, value, allowModification))); for (auto &e : m_Engines) { - Attribute &a = - static_cast &>(*itAttributePair.first->second); + Attribute &a = static_cast &>(*itAttributePair.first->second); void *Data = &a.m_DataSingleValue; if (a.m_DataArray.size() != 0) Data = a.m_DataArray.data(); - e.second->NotifyEngineAttribute( - globalName, itAttributePair.first->second.get(), Data); + e.second->NotifyEngineAttribute(globalName, itAttributePair.first->second.get(), Data); } return static_cast &>(*itAttributePair.first->second); } } template -Attribute & -IO::DefineAttribute(const std::string &name, const T *array, - const size_t elements, const std::string &variableName, - const std::string separator, const bool allowModification) +Attribute &IO::DefineAttribute(const std::string &name, const T *array, const size_t elements, + const std::string &variableName, const std::string separator, + const bool allowModification) { PERFSTUBS_SCOPED_TIMER("IO::DefineAttribute"); - if (!variableName.empty() && - InquireVariableType(variableName) == DataType::None) + if (!variableName.empty() && InquireVariableType(variableName) == DataType::None) { - helper::Throw( - "Core", "IO", "DefineAttribute", - "variable " + variableName + - " doesn't exist, can't associate attribute " + name + - ", in call to DefineAttribute"); + helper::Throw("Core", "IO", "DefineAttribute", + "variable " + variableName + + " doesn't exist, can't associate attribute " + + name + ", in call to DefineAttribute"); } - const std::string globalName = - helper::GlobalName(name, variableName, separator); + const std::string globalName = helper::GlobalName(name, variableName, separator); auto itExistingAttribute = m_Attributes.find(globalName); if (itExistingAttribute != m_Attributes.end()) { if (itExistingAttribute->second->m_Type == helper::GetDataType()) { - if (!itExistingAttribute->second->Equals( - static_cast(array), elements)) + if (!itExistingAttribute->second->Equals(static_cast(array), elements)) { - Attribute &a = - static_cast &>(*itExistingAttribute->second); + Attribute &a = static_cast &>(*itExistingAttribute->second); a.Modify(array, elements); void *Data = &a.m_DataSingleValue; if (a.m_DataArray.size() != 0) @@ -221,21 +201,18 @@ IO::DefineAttribute(const std::string &name, const T *array, { helper::Throw( "Core", "IO", "DefineAttribute", - "modifiable attribute " + globalName + - " has been defined with type " + - ToString(itExistingAttribute->second->m_Type) + - ". Type cannot be changed to " + + "modifiable attribute " + globalName + " has been defined with type " + + ToString(itExistingAttribute->second->m_Type) + ". Type cannot be changed to " + ToString(helper::GetDataType())); } return static_cast &>(*itExistingAttribute->second); } else { - auto itAttributePair = m_Attributes.emplace( - globalName, std::unique_ptr(new Attribute( - globalName, array, elements, allowModification))); - Attribute &a = - static_cast &>(*itAttributePair.first->second); + auto itAttributePair = + m_Attributes.emplace(globalName, std::unique_ptr(new Attribute( + globalName, array, elements, allowModification))); + Attribute &a = static_cast &>(*itAttributePair.first->second); void *Data = (void *)array; for (auto &e : m_Engines) { @@ -246,13 +223,11 @@ IO::DefineAttribute(const std::string &name, const T *array, } template -Attribute *IO::InquireAttribute(const std::string &name, - const std::string &variableName, +Attribute *IO::InquireAttribute(const std::string &name, const std::string &variableName, const std::string separator) noexcept { PERFSTUBS_SCOPED_TIMER("IO::InquireAttribute"); - const std::string globalName = - helper::GlobalName(name, variableName, separator); + const std::string globalName = helper::GlobalName(name, variableName, separator); auto itAttribute = m_Attributes.find(globalName); if (itAttribute == m_Attributes.end()) @@ -271,8 +246,7 @@ Attribute *IO::InquireAttribute(const std::string &name, // PRIVATE template -Params IO::GetVariableInfo(const std::string &variableName, - const std::set &keys) +Params IO::GetVariableInfo(const std::string &variableName, const std::set &keys) { Params info; // keys input are case insensitive @@ -293,8 +267,7 @@ Params IO::GetVariableInfo(const std::string &variableName, if (keys.empty() || keysLC.count("availablestepscount") == 1) { - info["AvailableStepsCount"] = - helper::ValueToString(variable.m_AvailableStepsCount); + info["AvailableStepsCount"] = helper::ValueToString(variable.m_AvailableStepsCount); } if (keys.empty() || keysLC.count("shape") == 1) @@ -305,8 +278,7 @@ Params IO::GetVariableInfo(const std::string &variableName, if (keys.empty() || keysLC.count("singlevalue") == 1) { - const std::string isSingleValue = - variable.m_SingleValue ? "true" : "false"; + const std::string isSingleValue = variable.m_SingleValue ? "true" : "false"; info["SingleValue"] = isSingleValue; } diff --git a/source/adios2/core/IOHDF5.cpp b/source/adios2/core/IOHDF5.cpp index 55caf757cf..21e2962521 100644 --- a/source/adios2/core/IOHDF5.cpp +++ b/source/adios2/core/IOHDF5.cpp @@ -19,16 +19,15 @@ namespace { template -std::shared_ptr MakeEngineHDF5(IO &io, const std::string &name, - const Mode mode, helper::Comm comm) +std::shared_ptr MakeEngineHDF5(IO &io, const std::string &name, const Mode mode, + helper::Comm comm) { #ifndef H5_HAVE_PARALLEL if (comm.IsMPI()) { - helper::Throw( - "Core", "IOHDF5", "MakeEngineHDF5", - "A serial HDF5 engine cannot be used " - "with a communicator that is MPI-based."); + helper::Throw("Core", "IOHDF5", "MakeEngineHDF5", + "A serial HDF5 engine cannot be used " + "with a communicator that is MPI-based."); } #endif return IO::MakeEngine(io, name, mode, std::move(comm)); diff --git a/source/adios2/core/IOMPI.cpp b/source/adios2/core/IOMPI.cpp index efd096cc1d..ed4b19b5d9 100644 --- a/source/adios2/core/IOMPI.cpp +++ b/source/adios2/core/IOMPI.cpp @@ -31,15 +31,14 @@ namespace core namespace { template -std::shared_ptr MakeEngineMPI(IO &io, const std::string &name, - const Mode mode, helper::Comm comm) +std::shared_ptr MakeEngineMPI(IO &io, const std::string &name, const Mode mode, + helper::Comm comm) { if (!comm.IsMPI()) { - helper::Throw( - "Core", "IOMPI", "MakeEngineMPI", - "A MPI-only engine cannot be used with a " - "communicator that is not MPI-based."); + helper::Throw("Core", "IOMPI", "MakeEngineMPI", + "A MPI-only engine cannot be used with a " + "communicator that is not MPI-based."); } return IO::MakeEngine(io, name, mode, std::move(comm)); } @@ -47,14 +46,12 @@ std::shared_ptr MakeEngineMPI(IO &io, const std::string &name, void RegisterMPIEngines() { - IO::RegisterEngine( - "ssc", IO::EngineFactoryEntry{MakeEngineMPI, - MakeEngineMPI}); + IO::RegisterEngine("ssc", IO::EngineFactoryEntry{MakeEngineMPI, + MakeEngineMPI}); #ifdef ADIOS2_HAVE_DATASPACES - IO::RegisterEngine( - "dataspaces", - IO::EngineFactoryEntry{MakeEngineMPI, - MakeEngineMPI}); + IO::RegisterEngine("dataspaces", + IO::EngineFactoryEntry{MakeEngineMPI, + MakeEngineMPI}); #endif #if defined(ADIOS2_HAVE_HDF5_PARALLEL) interop::RegisterHDF5Common_MPI_API(); diff --git a/source/adios2/core/Operator.cpp b/source/adios2/core/Operator.cpp index 23c36cb64f..946c6fbada 100644 --- a/source/adios2/core/Operator.cpp +++ b/source/adios2/core/Operator.cpp @@ -23,29 +23,26 @@ Operator::Operator(const std::string &typeString, const OperatorType typeEnum, { } -void Operator::SetParameter(const std::string key, - const std::string value) noexcept +void Operator::SetParameter(const std::string key, const std::string value) noexcept { m_Parameters[helper::LowerCase(key)] = value; } Params &Operator::GetParameters() noexcept { return m_Parameters; } -#define declare_type(T) \ - \ - void Operator::RunCallback1( \ - const T *arg0, const std::string &arg1, const std::string &arg2, \ - const std::string &arg3, const size_t arg4, const Dims &arg5, \ - const Dims &arg6, const Dims &arg7) const \ - { \ - CheckCallbackType("Callback1"); \ +#define declare_type(T) \ + \ + void Operator::RunCallback1(const T *arg0, const std::string &arg1, const std::string &arg2, \ + const std::string &arg3, const size_t arg4, const Dims &arg5, \ + const Dims &arg6, const Dims &arg7) const \ + { \ + CheckCallbackType("Callback1"); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type -void Operator::RunCallback2(void *arg0, const std::string &arg1, - const std::string &arg2, const std::string &arg3, - const size_t arg4, const Dims &arg5, +void Operator::RunCallback2(void *arg0, const std::string &arg1, const std::string &arg2, + const std::string &arg3, const size_t arg4, const Dims &arg5, const Dims &arg6, const Dims &arg7) const { CheckCallbackType("Callback2"); @@ -53,9 +50,8 @@ void Operator::RunCallback2(void *arg0, const std::string &arg1, // PROTECTED -Dims Operator::ConvertDims(const Dims &dimensions, const DataType type, - const size_t targetDims, const bool enforceDims, - const size_t defaultDimSize) const +Dims Operator::ConvertDims(const Dims &dimensions, const DataType type, const size_t targetDims, + const bool enforceDims, const size_t defaultDimSize) const { if (targetDims < 1) @@ -105,10 +101,10 @@ void Operator::CheckCallbackType(const std::string type) const { if (m_TypeString != type) { - helper::Throw( - "Core", "Operator", "CheckCallbackType", - "operator of type " + m_TypeString + - " doesn't match expected callback type " + type + " arguments"); + helper::Throw("Core", "Operator", "CheckCallbackType", + "operator of type " + m_TypeString + + " doesn't match expected callback type " + type + + " arguments"); } } diff --git a/source/adios2/core/Operator.h b/source/adios2/core/Operator.h index 63a33e749f..a13b596a56 100644 --- a/source/adios2/core/Operator.h +++ b/source/adios2/core/Operator.h @@ -56,17 +56,15 @@ class Operator Params &GetParameters() noexcept; -#define declare_type(T) \ - virtual void RunCallback1(const T *, const std::string &, \ - const std::string &, const std::string &, \ - const size_t, const Dims &, const Dims &, \ +#define declare_type(T) \ + virtual void RunCallback1(const T *, const std::string &, const std::string &, \ + const std::string &, const size_t, const Dims &, const Dims &, \ const Dims &) const; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type - virtual void RunCallback2(void *, const std::string &, const std::string &, - const std::string &, const size_t, const Dims &, - const Dims &, const Dims &) const; + virtual void RunCallback2(void *, const std::string &, const std::string &, const std::string &, + const size_t, const Dims &, const Dims &, const Dims &) const; virtual size_t GetHeaderSize() const; @@ -79,9 +77,8 @@ class Operator * @param parameters * @return size of compressed buffer */ - virtual size_t Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) = 0; + virtual size_t Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) = 0; /** * @param bufferIn @@ -89,8 +86,7 @@ class Operator * @param dataOut * @return size of decompressed buffer */ - virtual size_t InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) = 0; + virtual size_t InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) = 0; virtual bool IsDataTypeValid(const DataType type) const = 0; @@ -107,14 +103,11 @@ class Operator * @param targetDims * @return refined dimensions */ - Dims ConvertDims(const Dims &dimensions, const DataType type, - const size_t targetDims = 0, - const bool enforceDims = false, - const size_t defaultDimSize = 1) const; + Dims ConvertDims(const Dims &dimensions, const DataType type, const size_t targetDims = 0, + const bool enforceDims = false, const size_t defaultDimSize = 1) const; template - void MakeCommonHeader(char *bufferOut, T &bufferOutOffset, - const uint8_t bufferVersion) + void MakeCommonHeader(char *bufferOut, T &bufferOutOffset, const uint8_t bufferVersion) { PutParameter(bufferOut, bufferOutOffset, m_TypeEnum); PutParameter(bufferOut, bufferOutOffset, bufferVersion); @@ -166,12 +159,10 @@ class Operator for (uint8_t i = 0; i < params; ++i) { uint8_t size = GetParameter(buffer, pos); - std::string key = - std::string(reinterpret_cast(buffer + pos), size); + std::string key = std::string(reinterpret_cast(buffer + pos), size); pos += size; size = GetParameter(buffer, pos); - std::string value = - std::string(reinterpret_cast(buffer + pos), size); + std::string value = std::string(reinterpret_cast(buffer + pos), size); pos += size; ret[key] = value; } diff --git a/source/adios2/core/Span.tcc b/source/adios2/core/Span.tcc index ab7435cdd3..738d5d484a 100644 --- a/source/adios2/core/Span.tcc +++ b/source/adios2/core/Span.tcc @@ -21,8 +21,7 @@ namespace core { template -Span::Span(Engine &engine, const size_t size) -: m_Engine(engine), m_Size(size) +Span::Span(Engine &engine, const size_t size) : m_Engine(engine), m_Size(size) { } @@ -43,10 +42,10 @@ T &Span::At(const size_t position) { if (position > m_Size) { - helper::Throw( - "Core", "Span", "At", - "position " + std::to_string(position) + - " is out of bounds for span of size " + std::to_string(m_Size)); + helper::Throw("Core", "Span", "At", + "position " + std::to_string(position) + + " is out of bounds for span of size " + + std::to_string(m_Size)); } return (*this)[position]; @@ -55,8 +54,7 @@ T &Span::At(const size_t position) template T &Span::operator[](const size_t position) { - T &data = *m_Engine.BufferData(m_BufferIdx, - m_PayloadPosition + position * sizeof(T)); + T &data = *m_Engine.BufferData(m_BufferIdx, m_PayloadPosition + position * sizeof(T)); return data; } diff --git a/source/adios2/core/Stream.cpp b/source/adios2/core/Stream.cpp index 2ae31a67eb..43abacc703 100644 --- a/source/adios2/core/Stream.cpp +++ b/source/adios2/core/Stream.cpp @@ -20,19 +20,17 @@ namespace core Stream::Stream(const std::string &name, const Mode mode, helper::Comm comm, const std::string engineType, const std::string hostLanguage) -: m_ADIOS(std::make_shared(std::move(comm), hostLanguage)), - m_IO(&m_ADIOS->DeclareIO(name)), m_Name(name), m_Mode(mode), - m_EngineType(engineType) +: m_ADIOS(std::make_shared(std::move(comm), hostLanguage)), m_IO(&m_ADIOS->DeclareIO(name)), + m_Name(name), m_Mode(mode), m_EngineType(engineType) { - if ((mode == adios2::Mode::Read) || - (mode == adios2::Mode::ReadRandomAccess)) + if ((mode == adios2::Mode::Read) || (mode == adios2::Mode::ReadRandomAccess)) { CheckOpen(); } } -Stream::Stream(const std::string &name, const Mode mode, - const std::string engineType, const std::string hostLanguage) +Stream::Stream(const std::string &name, const Mode mode, const std::string engineType, + const std::string hostLanguage) : Stream(name, mode, helper::CommDummy(), engineType, hostLanguage) { } @@ -43,18 +41,15 @@ Stream::Stream(const std::string &name, const Mode mode, helper::Comm comm, : m_ADIOS(std::make_shared(configFile, std::move(comm), hostLanguage)), m_IO(&m_ADIOS->DeclareIO(ioInConfigFile)), m_Name(name), m_Mode(mode) { - if ((mode == adios2::Mode::Read) || - (mode == adios2::Mode::ReadRandomAccess)) + if ((mode == adios2::Mode::Read) || (mode == adios2::Mode::ReadRandomAccess)) { CheckOpen(); } } -Stream::Stream(const std::string &name, const Mode mode, - const std::string configFile, const std::string ioInConfigFile, - const std::string hostLanguage) -: Stream(name, mode, helper::CommDummy(), configFile, ioInConfigFile, - hostLanguage) +Stream::Stream(const std::string &name, const Mode mode, const std::string configFile, + const std::string ioInConfigFile, const std::string hostLanguage) +: Stream(name, mode, helper::CommDummy(), configFile, ioInConfigFile, hostLanguage) { } @@ -91,12 +86,11 @@ void Stream::EndStep() } else { - helper::Throw( - "Core", "Stream", "EndStep", - "stream " + m_Name + - " calling end step function twice (check " - "if a write function calls it) or " - "invalid stream"); + helper::Throw("Core", "Stream", "EndStep", + "stream " + m_Name + + " calling end step function twice (check " + "if a write function calls it) or " + "invalid stream"); } } @@ -119,11 +113,10 @@ size_t Stream::CurrentStep() const if (m_Engine == nullptr) { - helper::Throw( - "Core", "Stream", "CurrentStep", - "stream with name " + m_Name + - "is invalid or closed, in call " - "to CurrentStep"); + helper::Throw("Core", "Stream", "CurrentStep", + "stream with name " + m_Name + + "is invalid or closed, in call " + "to CurrentStep"); } return m_Engine->CurrentStep(); @@ -153,52 +146,43 @@ void Stream::CheckOpen() } } -#define declare_template_instantiation(T) \ - template void Stream::WriteAttribute(const std::string &, const T &, \ - const std::string &, \ - const std::string, const bool); \ - \ - template void Stream::WriteAttribute(const std::string &, const T *, \ - const size_t, const std::string &, \ - const std::string, const bool); \ - \ - template void Stream::ReadAttribute( \ - const std::string &, T *, const std::string &, const std::string); +#define declare_template_instantiation(T) \ + template void Stream::WriteAttribute(const std::string &, const T &, const std::string &, \ + const std::string, const bool); \ + \ + template void Stream::WriteAttribute(const std::string &, const T *, const size_t, \ + const std::string &, const std::string, const bool); \ + \ + template void Stream::ReadAttribute(const std::string &, T *, const std::string &, \ + const std::string); ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation -#define declare_template_instantiation(T) \ - template void Stream::Write(const std::string &, const T *, \ - const Dims &, const Dims &, const Dims &, \ - const vParams &, const bool); \ - \ - template void Stream::Write(const std::string &, const T &, const bool, \ - const bool); \ - \ - template void Stream::Read(const std::string &, T *, const size_t); \ - \ - template void Stream::Read(const std::string &, T *, \ - const Box &, const size_t); \ - \ - template void Stream::Read(const std::string &, T *, const Box &, \ - const size_t); \ - \ - template void Stream::Read(const std::string &, T *, const Box &, \ - const Box &, const size_t); \ - \ - template std::vector Stream::Read(const std::string &, \ - const size_t); \ - \ - template std::vector Stream::Read( \ - const std::string &, const Box &, const size_t); \ - \ - template std::vector Stream::Read( \ - const std::string &, const Box &, const Box &, \ - const size_t); \ - \ - template std::vector Stream::Read(const std::string &, \ - const Box &, const size_t); +#define declare_template_instantiation(T) \ + template void Stream::Write(const std::string &, const T *, const Dims &, const Dims &, \ + const Dims &, const vParams &, const bool); \ + \ + template void Stream::Write(const std::string &, const T &, const bool, const bool); \ + \ + template void Stream::Read(const std::string &, T *, const size_t); \ + \ + template void Stream::Read(const std::string &, T *, const Box &, const size_t); \ + \ + template void Stream::Read(const std::string &, T *, const Box &, const size_t); \ + \ + template void Stream::Read(const std::string &, T *, const Box &, \ + const Box &, const size_t); \ + \ + template std::vector Stream::Read(const std::string &, const size_t); \ + \ + template std::vector Stream::Read(const std::string &, const Box &, \ + const size_t); \ + \ + template std::vector Stream::Read(const std::string &, const Box &, \ + const Box &, const size_t); \ + \ + template std::vector Stream::Read(const std::string &, const Box &, const size_t); ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation diff --git a/source/adios2/core/Stream.h b/source/adios2/core/Stream.h index e7739c7028..a91db94341 100644 --- a/source/adios2/core/Stream.h +++ b/source/adios2/core/Stream.h @@ -50,32 +50,29 @@ class Stream Stream(const std::string &name, const Mode mode, helper::Comm comm, const std::string engineType, const std::string hostLanguage); - Stream(const std::string &name, const Mode mode, - const std::string engineType, const std::string hostLanguage); + Stream(const std::string &name, const Mode mode, const std::string engineType, + const std::string hostLanguage); Stream(const std::string &name, const Mode mode, helper::Comm comm, const std::string configFile, const std::string ioInConfigFile, const std::string hostLanguage); - Stream(const std::string &name, const Mode mode, - const std::string configFile, const std::string ioInConfigFile, - const std::string hostLanguage); + Stream(const std::string &name, const Mode mode, const std::string configFile, + const std::string ioInConfigFile, const std::string hostLanguage); ~Stream() = default; template - void WriteAttribute(const std::string &name, const T &value, - const std::string &variableName, + void WriteAttribute(const std::string &name, const T &value, const std::string &variableName, const std::string separator, const bool nextStep); template - void WriteAttribute(const std::string &name, const T *array, - const size_t elements, const std::string &variableName, - const std::string separator, const bool nextStep); + void WriteAttribute(const std::string &name, const T *array, const size_t elements, + const std::string &variableName, const std::string separator, + const bool nextStep); template - void Write(const std::string &name, const T *values, const Dims &shape, - const Dims &start, const Dims &count, - const vParams &operations = vParams(), + void Write(const std::string &name, const T *values, const Dims &shape, const Dims &start, + const Dims &count, const vParams &operations = vParams(), const bool endStep = false); template @@ -88,12 +85,10 @@ class Stream void Read(const std::string &name, T *values, const size_t blockID); template - void Read(const std::string &name, T *values, const Box &step, - const size_t blockID); + void Read(const std::string &name, T *values, const Box &step, const size_t blockID); template - void Read(const std::string &name, T *values, const Box &selection, - const size_t blockID); + void Read(const std::string &name, T *values, const Box &selection, const size_t blockID); template void Read(const std::string &name, T *values, const Box &selection, @@ -103,22 +98,18 @@ class Stream std::vector Read(const std::string &name, const size_t blockID); template - std::vector Read(const std::string &name, - const Box &stepsSelection, + std::vector Read(const std::string &name, const Box &stepsSelection, const size_t blockID); template - std::vector Read(const std::string &name, const Box &selection, - const size_t blockID); + std::vector Read(const std::string &name, const Box &selection, const size_t blockID); template std::vector Read(const std::string &name, const Box &selection, - const Box &stepsSelection, - const size_t blockID); + const Box &stepsSelection, const size_t blockID); template - void ReadAttribute(const std::string &name, T *data, - const std::string &variableName, + void ReadAttribute(const std::string &name, T *data, const std::string &variableName, const std::string separator); void EndStep(); diff --git a/source/adios2/core/Stream.tcc b/source/adios2/core/Stream.tcc index 735bc395ce..a06bf23505 100644 --- a/source/adios2/core/Stream.tcc +++ b/source/adios2/core/Stream.tcc @@ -23,8 +23,8 @@ namespace core template void Stream::WriteAttribute(const std::string &name, const T &value, - const std::string &variableName, - const std::string separator, const bool endStep) + const std::string &variableName, const std::string separator, + const bool endStep) { m_IO->DefineAttribute(name, value, variableName, separator); CheckOpen(); @@ -42,10 +42,9 @@ void Stream::WriteAttribute(const std::string &name, const T &value, } template -void Stream::WriteAttribute(const std::string &name, const T *array, - const size_t elements, - const std::string &variableName, - const std::string separator, const bool endStep) +void Stream::WriteAttribute(const std::string &name, const T *array, const size_t elements, + const std::string &variableName, const std::string separator, + const bool endStep) { m_IO->DefineAttribute(name, array, elements, variableName, separator); CheckOpen(); @@ -63,9 +62,8 @@ void Stream::WriteAttribute(const std::string &name, const T *array, } template -void Stream::Write(const std::string &name, const T *data, const Dims &shape, - const Dims &start, const Dims &count, - const adios2::vParams &operations, const bool endStep) +void Stream::Write(const std::string &name, const T *data, const Dims &shape, const Dims &start, + const Dims &count, const adios2::vParams &operations, const bool endStep) { Variable *variable = m_IO->InquireVariable(name); @@ -113,14 +111,13 @@ void Stream::Write(const std::string &name, const T *data, const Dims &shape, } template -void Stream::Write(const std::string &name, const T &datum, const bool isLocal, - const bool endStep) +void Stream::Write(const std::string &name, const T &datum, const bool isLocal, const bool endStep) { const T datumLocal = datum; if (isLocal) { - Write(name, &datumLocal, {static_cast(adios2::LocalValueDim)}, - {}, {}, vParams(), endStep); + Write(name, &datumLocal, {static_cast(adios2::LocalValueDim)}, {}, {}, vParams(), + endStep); } else { @@ -145,8 +142,8 @@ void Stream::Read(const std::string &name, T *values, const size_t blockID) } template -void Stream::Read(const std::string &name, T *values, - const Box &stepSelection, const size_t blockID) +void Stream::Read(const std::string &name, T *values, const Box &stepSelection, + const size_t blockID) { CheckPCommon(name, values); @@ -163,8 +160,8 @@ void Stream::Read(const std::string &name, T *values, } template -void Stream::Read(const std::string &name, T *values, - const Box &selection, const size_t blockID) +void Stream::Read(const std::string &name, T *values, const Box &selection, + const size_t blockID) { CheckPCommon(name, values); @@ -181,9 +178,8 @@ void Stream::Read(const std::string &name, T *values, } template -void Stream::Read(const std::string &name, T *values, - const Box &selection, const Box &stepSelection, - const size_t blockID) +void Stream::Read(const std::string &name, T *values, const Box &selection, + const Box &stepSelection, const size_t blockID) { CheckPCommon(name, values); @@ -213,8 +209,7 @@ std::vector Stream::Read(const std::string &name, const size_t blockID) } template -std::vector Stream::Read(const std::string &name, - const Box &stepsSelection, +std::vector Stream::Read(const std::string &name, const Box &stepsSelection, const size_t blockID) { Variable *variable = m_IO->InquireVariable(name); @@ -244,8 +239,7 @@ std::vector Stream::Read(const std::string &name, const Box &selection, template std::vector Stream::Read(const std::string &name, const Box &selection, - const Box &stepSelection, - const size_t blockID) + const Box &stepSelection, const size_t blockID) { Variable *variable = m_IO->InquireVariable(name); if (variable == nullptr) @@ -260,12 +254,10 @@ std::vector Stream::Read(const std::string &name, const Box &selection, } template -void Stream::ReadAttribute(const std::string &name, T *data, - const std::string &variableName, +void Stream::ReadAttribute(const std::string &name, T *data, const std::string &variableName, const std::string separator) { - Attribute *attribute = - m_IO->InquireAttribute(name, variableName, separator); + Attribute *attribute = m_IO->InquireAttribute(name, variableName, separator); if (attribute == nullptr) { @@ -278,8 +270,7 @@ void Stream::ReadAttribute(const std::string &name, T *data, } else { - std::copy(attribute->m_DataArray.begin(), attribute->m_DataArray.end(), - data); + std::copy(attribute->m_DataArray.begin(), attribute->m_DataArray.end(), data); } } @@ -296,9 +287,9 @@ std::vector Stream::GetCommon(Variable &variable) } catch (std::exception &e) { - helper::ThrowNested( - "Core", "Stream", "GetCommon", - "couldn't read variable " + variable.m_Name + ": " + e.what()); + helper::ThrowNested("Core", "Stream", "GetCommon", + "couldn't read variable " + variable.m_Name + ": " + + e.what()); } return std::vector(); } @@ -313,10 +304,9 @@ void Stream::GetPCommon(Variable &variable, T *values) } catch (std::exception &e) { - helper::ThrowNested( - "Core", "Stream", "GetCommon", - "couldn't read pointer variable " + variable.m_Name + ": " + - e.what()); + helper::ThrowNested("Core", "Stream", "GetCommon", + "couldn't read pointer variable " + + variable.m_Name + ": " + e.what()); } } @@ -325,16 +315,14 @@ void Stream::CheckPCommon(const std::string &name, const T *values) const { if (values == nullptr) { - helper::Throw( - "Core", "Stream", "CheckPCommon", - "passed null values pointer for variable " + name + - ", in call to read pointer"); + helper::Throw("Core", "Stream", "CheckPCommon", + "passed null values pointer for variable " + name + + ", in call to read pointer"); } } template -void Stream::SetBlockSelectionCommon(Variable &variable, - const size_t blockID) +void Stream::SetBlockSelectionCommon(Variable &variable, const size_t blockID) { if (variable.m_ShapeID == ShapeID::LocalArray) { @@ -344,11 +332,10 @@ void Stream::SetBlockSelectionCommon(Variable &variable, { if (blockID != 0) { - helper::Throw( - "Core", "Stream", "SetBlockSelectionCommon", - "in variable " + variable.m_Name + - " only set blockID > 0 for variables " - "with ShapeID::LocalArray, in call to read"); + helper::Throw("Core", "Stream", "SetBlockSelectionCommon", + "in variable " + variable.m_Name + + " only set blockID > 0 for variables " + "with ShapeID::LocalArray, in call to read"); } } } diff --git a/source/adios2/core/Variable.cpp b/source/adios2/core/Variable.cpp index 011c957a25..26f6f11215 100644 --- a/source/adios2/core/Variable.cpp +++ b/source/adios2/core/Variable.cpp @@ -20,87 +20,83 @@ namespace adios2 namespace core { -#define declare_type(T) \ - \ - template <> \ - Variable::Variable(const std::string &name, const Dims &shape, \ - const Dims &start, const Dims &count, \ - const bool constantDims) \ - : VariableBase(name, helper::GetDataType(), sizeof(T), shape, start, \ - count, constantDims) \ - { \ - m_BlocksInfo.reserve(1); \ - } \ - \ - template <> \ - typename Variable::BPInfo &Variable::SetBlockInfo( \ - const T *data, const size_t stepsStart, \ - const size_t stepsCount) noexcept \ - { \ - BPInfo info; \ - info.Shape = m_Shape; \ - info.Start = m_Start; \ - info.Count = m_Count; \ - info.BlockID = m_BlockID; \ - info.Selection = m_SelectionType; \ - info.MemoryStart = m_MemoryStart; \ - info.MemoryCount = m_MemoryCount; \ - info.StepsStart = stepsStart; \ - info.StepsCount = stepsCount; \ - info.Data = const_cast(data); \ - info.Operations = m_Operations; \ - info.MemSpace = GetMemorySpace((void *)data); \ - m_BlocksInfo.push_back(info); \ - return m_BlocksInfo.back(); \ - } \ - \ - template <> \ - void Variable::SetData(const T *data) noexcept \ - { \ - m_Data = const_cast(data); \ - } \ - \ - template <> \ - T *Variable::GetData() const noexcept \ - { \ - return m_Data; \ - } \ - \ - template <> \ - Dims Variable::Count() const \ - { \ - return DoCount(); \ - } \ - \ - template <> \ - size_t Variable::SelectionSize() const \ - { \ - return DoSelectionSize(); \ - } \ - \ - template <> \ - std::pair Variable::MinMax(const size_t step) const \ - { \ - return DoMinMax(step); \ - } \ - \ - template <> \ - T Variable::Min(const size_t step) const \ - { \ - return MinMax(step).first; \ - } \ - \ - template <> \ - T Variable::Max(const size_t step) const \ - { \ - return MinMax(step).second; \ - } \ - \ - template <> \ - std::vector::BPInfo>> \ - Variable::AllStepsBlocksInfo() const \ - { \ - return DoAllStepsBlocksInfo(); \ +#define declare_type(T) \ + \ + template <> \ + Variable::Variable(const std::string &name, const Dims &shape, const Dims &start, \ + const Dims &count, const bool constantDims) \ + : VariableBase(name, helper::GetDataType(), sizeof(T), shape, start, count, constantDims) \ + { \ + m_BlocksInfo.reserve(1); \ + } \ + \ + template <> \ + typename Variable::BPInfo &Variable::SetBlockInfo( \ + const T *data, const size_t stepsStart, const size_t stepsCount) noexcept \ + { \ + BPInfo info; \ + info.Shape = m_Shape; \ + info.Start = m_Start; \ + info.Count = m_Count; \ + info.BlockID = m_BlockID; \ + info.Selection = m_SelectionType; \ + info.MemoryStart = m_MemoryStart; \ + info.MemoryCount = m_MemoryCount; \ + info.StepsStart = stepsStart; \ + info.StepsCount = stepsCount; \ + info.Data = const_cast(data); \ + info.Operations = m_Operations; \ + info.MemSpace = GetMemorySpace((void *)data); \ + m_BlocksInfo.push_back(info); \ + return m_BlocksInfo.back(); \ + } \ + \ + template <> \ + void Variable::SetData(const T *data) noexcept \ + { \ + m_Data = const_cast(data); \ + } \ + \ + template <> \ + T *Variable::GetData() const noexcept \ + { \ + return m_Data; \ + } \ + \ + template <> \ + Dims Variable::Count() const \ + { \ + return DoCount(); \ + } \ + \ + template <> \ + size_t Variable::SelectionSize() const \ + { \ + return DoSelectionSize(); \ + } \ + \ + template <> \ + std::pair Variable::MinMax(const size_t step) const \ + { \ + return DoMinMax(step); \ + } \ + \ + template <> \ + T Variable::Min(const size_t step) const \ + { \ + return MinMax(step).first; \ + } \ + \ + template <> \ + T Variable::Max(const size_t step) const \ + { \ + return MinMax(step).second; \ + } \ + \ + template <> \ + std::vector::BPInfo>> Variable::AllStepsBlocksInfo() const \ + { \ + return DoAllStepsBlocksInfo(); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) diff --git a/source/adios2/core/Variable.h b/source/adios2/core/Variable.h index 43a7ac054d..2f829363c2 100644 --- a/source/adios2/core/Variable.h +++ b/source/adios2/core/Variable.h @@ -56,8 +56,7 @@ class Variable : public VariableBase * value: blockID is the vector (map value) index * */ - std::map> - StepBlockSubStreamsInfo; + std::map> StepBlockSubStreamsInfo; Dims Shape; Dims Start; @@ -93,8 +92,8 @@ class Variable : public VariableBase * m_BlocksInfo index (BP4 ONLY) */ std::map m_BlocksSpan; - Variable(const std::string &name, const Dims &shape, const Dims &start, - const Dims &count, const bool constantShape); + Variable(const std::string &name, const Dims &shape, const Dims &start, const Dims &count, + const bool constantShape); ~Variable() = default; @@ -115,8 +114,7 @@ class Variable : public VariableBase T Max(const size_t step = adios2::DefaultSizeT) const; - std::vector::BPInfo>> - AllStepsBlocksInfo() const; + std::vector::BPInfo>> AllStepsBlocksInfo() const; private: Dims DoCount() const; @@ -125,8 +123,7 @@ class Variable : public VariableBase std::pair DoMinMax(const size_t step) const; - std::vector::BPInfo>> - DoAllStepsBlocksInfo() const; + std::vector::BPInfo>> DoAllStepsBlocksInfo() const; size_t WriterIndex; }; diff --git a/source/adios2/core/Variable.tcc b/source/adios2/core/Variable.tcc index 18fb9d59f7..849390e4bc 100644 --- a/source/adios2/core/Variable.tcc +++ b/source/adios2/core/Variable.tcc @@ -25,16 +25,15 @@ template Dims Variable::DoCount() const { auto lf_Step = [&]() -> size_t { - auto itStep = - std::next(m_AvailableStepBlockIndexOffsets.begin(), m_StepsStart); + auto itStep = std::next(m_AvailableStepBlockIndexOffsets.begin(), m_StepsStart); if (itStep == m_AvailableStepBlockIndexOffsets.end()) { auto it = m_AvailableStepBlockIndexOffsets.rbegin(); helper::Throw( "Core", "Variable", "DoCount", "current relative step start for variable " + m_Name + - " is outside the scope of available steps " + - std::to_string(it->first - 1) + " in call to Count"); + " is outside the scope of available steps " + std::to_string(it->first - 1) + + " in call to Count"); } return itStep->first - 1; }; @@ -52,9 +51,8 @@ Dims Variable::DoCount() const " from SetBlockSelection is out of bounds for " "available " "blocks size " + - std::to_string(MVI->BlocksInfo.size()) + - " for variable " + m_Name + " for step " + - std::to_string(m_StepsStart) + + std::to_string(MVI->BlocksInfo.size()) + " for variable " + m_Name + + " for step " + std::to_string(m_StepsStart) + ", in call to Variable::Count()"); } @@ -69,8 +67,7 @@ Dims Variable::DoCount() const return D; } - const size_t step = - !m_FirstStreamingStep ? m_Engine->CurrentStep() : lf_Step(); + const size_t step = !m_FirstStreamingStep ? m_Engine->CurrentStep() : lf_Step(); const std::vector::BPInfo> blocksInfo = m_Engine->BlocksInfo(*this, step); @@ -82,9 +79,8 @@ Dims Variable::DoCount() const "blockID " + std::to_string(m_BlockID) + " from SetBlockSelection is out of bounds for available " "blocks size " + - std::to_string(blocksInfo.size()) + " for variable " + - m_Name + " for step " + std::to_string(step) + - ", in call to Variable::Count()"); + std::to_string(blocksInfo.size()) + " for variable " + m_Name + " for step " + + std::to_string(step) + ", in call to Variable::Count()"); } return blocksInfo[m_BlockID].Count; @@ -127,8 +123,7 @@ std::pair Variable::DoMinMax(const size_t step) const } if (m_Engine != nullptr && !m_FirstStreamingStep) { - const size_t stepInput = - (step == DefaultSizeT) ? m_Engine->CurrentStep() : step; + const size_t stepInput = (step == DefaultSizeT) ? m_Engine->CurrentStep() : step; const std::vector::BPInfo> blocksInfo = m_Engine->BlocksInfo(*this, stepInput); @@ -153,17 +148,14 @@ std::pair Variable::DoMinMax(const size_t step) const return minMax; } - const bool isValue = - ((blocksInfo.front().Shape.size() == 1 && - blocksInfo.front().Shape.front() == LocalValueDim) || - m_ShapeID == ShapeID::GlobalValue) - ? true - : false; + const bool isValue = ((blocksInfo.front().Shape.size() == 1 && + blocksInfo.front().Shape.front() == LocalValueDim) || + m_ShapeID == ShapeID::GlobalValue) + ? true + : false; - minMax.first = - isValue ? blocksInfo.front().Value : blocksInfo.front().Min; - minMax.second = - isValue ? blocksInfo.front().Value : blocksInfo.front().Max; + minMax.first = isValue ? blocksInfo.front().Value : blocksInfo.front().Min; + minMax.second = isValue ? blocksInfo.front().Value : blocksInfo.front().Max; for (const typename Variable::BPInfo &blockInfo : blocksInfo) { @@ -191,27 +183,24 @@ std::pair Variable::DoMinMax(const size_t step) const } template -std::vector::BPInfo>> -Variable::DoAllStepsBlocksInfo() const +std::vector::BPInfo>> Variable::DoAllStepsBlocksInfo() const { if (m_Engine == nullptr) { - helper::Throw( - "Core", "Variable", "DoAllStepsBlocksInfo", - "from variable " + m_Name + - " function is only valid in read mode, in " - "call to Variable::AllBlocksInfo"); + helper::Throw("Core", "Variable", "DoAllStepsBlocksInfo", + "from variable " + m_Name + + " function is only valid in read mode, in " + "call to Variable::AllBlocksInfo"); } if (!m_FirstStreamingStep) { - helper::Throw( - "Core", "Variable", "DoAllStepsBlocksInfo", - "from variable " + m_Name + - " function is not valid in " - "random-access read mode " - "(BeginStep/EndStep), in " - "call to Variable::AllBlocksInfo"); + helper::Throw("Core", "Variable", "DoAllStepsBlocksInfo", + "from variable " + m_Name + + " function is not valid in " + "random-access read mode " + "(BeginStep/EndStep), in " + "call to Variable::AllBlocksInfo"); } return m_Engine->AllRelativeStepsBlocksInfo(*this); diff --git a/source/adios2/core/VariableBase.cpp b/source/adios2/core/VariableBase.cpp index f8e6cf9ed0..a6430f67ba 100644 --- a/source/adios2/core/VariableBase.cpp +++ b/source/adios2/core/VariableBase.cpp @@ -31,20 +31,16 @@ namespace adios2 namespace core { -VariableBase::VariableBase(const std::string &name, const DataType type, - const size_t elementSize, const Dims &shape, - const Dims &start, const Dims &count, +VariableBase::VariableBase(const std::string &name, const DataType type, const size_t elementSize, + const Dims &shape, const Dims &start, const Dims &count, const bool constantDims) -: m_Name(name), m_Type(type), m_ElementSize(elementSize), m_Shape(shape), - m_Start(start), m_Count(count), m_ConstantDims(constantDims) +: m_Name(name), m_Type(type), m_ElementSize(elementSize), m_Shape(shape), m_Start(start), + m_Count(count), m_ConstantDims(constantDims) { InitShapeType(); } -size_t VariableBase::TotalSize() const noexcept -{ - return helper::GetTotalSize(m_Count); -} +size_t VariableBase::TotalSize() const noexcept { return helper::GetTotalSize(m_Count); } MemorySpace VariableBase::GetMemorySpace(const void *ptr) { @@ -68,27 +64,24 @@ void VariableBase::SetShape(const adios2::Dims &shape) { if (m_Type == helper::GetDataType()) { - helper::Throw( - "Core", "VariableBase", "SetShape", - "string variable " + m_Name + - " is always LocalValue, can't change " - "shape, in call to SetShape"); + helper::Throw("Core", "VariableBase", "SetShape", + "string variable " + m_Name + + " is always LocalValue, can't change " + "shape, in call to SetShape"); } if (m_SingleValue) { - helper::Throw( - "Core", "VariableBase", "SetShape", - "selection is not valid for single value variable " + m_Name + - ", in call to SetShape"); + helper::Throw("Core", "VariableBase", "SetShape", + "selection is not valid for single value variable " + + m_Name + ", in call to SetShape"); } if (m_ConstantDims) { - helper::Throw( - "Core", "VariableBase", "SetShape", - "selection is not valid for constant shape variable " + m_Name + - ", in call to SetShape"); + helper::Throw("Core", "VariableBase", "SetShape", + "selection is not valid for constant shape variable " + + m_Name + ", in call to SetShape"); } if (m_ShapeID == ShapeID::LocalArray) @@ -96,8 +89,7 @@ void VariableBase::SetShape(const adios2::Dims &shape) helper::Throw("Core", "VariableBase", "SetShape", "can't assign shape dimensions " "to local array variable " + - m_Name + - ", in call to SetShape"); + m_Name + ", in call to SetShape"); } m_Shape = shape; @@ -114,49 +106,43 @@ void VariableBase::SetSelection(const Box &boxDims) const Dims &start = boxDims.first; const Dims &count = boxDims.second; - if (m_Type == helper::GetDataType() && - m_ShapeID != ShapeID::GlobalArray) + if (m_Type == helper::GetDataType() && m_ShapeID != ShapeID::GlobalArray) { - helper::Throw( - "Core", "VariableBase", "SetSelection", - "string variable " + m_Name + - " not a GlobalArray, it can't have a " - "selection, in call to SetSelection"); + helper::Throw("Core", "VariableBase", "SetSelection", + "string variable " + m_Name + + " not a GlobalArray, it can't have a " + "selection, in call to SetSelection"); } if (m_SingleValue && m_ShapeID != ShapeID::GlobalArray) { - helper::Throw( - "Core", "VariableBase", "SetSelection", - "selection is not valid for single value variable " + m_Name + - ", in call to SetSelection"); + helper::Throw("Core", "VariableBase", "SetSelection", + "selection is not valid for single value variable " + + m_Name + ", in call to SetSelection"); } if (m_ConstantDims) { - helper::Throw( - "Core", "VariableBase", "SetSelection", - "selection is not valid for constant shape variable " + m_Name + - ", in call to SetSelection"); + helper::Throw("Core", "VariableBase", "SetSelection", + "selection is not valid for constant shape variable " + + m_Name + ", in call to SetSelection"); } if (m_ShapeID == ShapeID::GlobalArray && (m_Shape.size() != count.size() || m_Shape.size() != start.size())) { - helper::Throw( - "Core", "VariableBase", "SetSelection", - "count and start must be the " - "same size as shape for variable " + - m_Name + ", in call to SetSelection"); + helper::Throw("Core", "VariableBase", "SetSelection", + "count and start must be the " + "same size as shape for variable " + + m_Name + ", in call to SetSelection"); } if (m_ShapeID == ShapeID::JoinedArray && !start.empty()) { - helper::Throw( - "Core", "VariableBase", "SetSelection", - "start argument must be empty " - "for joined array variable " + - m_Name + ", in call to SetSelection"); + helper::Throw("Core", "VariableBase", "SetSelection", + "start argument must be empty " + "for joined array variable " + + m_Name + ", in call to SetSelection"); } m_Start = start; @@ -171,31 +157,30 @@ void VariableBase::SetMemorySelection(const Box &memorySelection) if (m_SingleValue) { - helper::Throw( - "Core", "VariableBase", "SetMemorySelection", - "memory start is not valid " - "for single value variable " + - m_Name + ", in call to SetMemorySelection"); + helper::Throw("Core", "VariableBase", "SetMemorySelection", + "memory start is not valid " + "for single value variable " + + m_Name + ", in call to SetMemorySelection"); } if (m_Start.size() != memoryStart.size()) { - helper::Throw( - "Core", "VariableBase", "SetMemorySelection", - "memoryStart size must be " - "the same as variable " + - m_Name + " start size " + std::to_string(m_Start.size()) + - ", in call to SetMemorySelection"); + helper::Throw("Core", "VariableBase", "SetMemorySelection", + "memoryStart size must be " + "the same as variable " + + m_Name + " start size " + + std::to_string(m_Start.size()) + + ", in call to SetMemorySelection"); } if (m_Count.size() != memoryCount.size()) { - helper::Throw( - "Core", "VariableBase", "SetMemorySelection", - "memoryCount size must be " - "the same as variable " + - m_Name + " count size " + std::to_string(m_Count.size()) + - ", in call to SetMemorySelection"); + helper::Throw("Core", "VariableBase", "SetMemorySelection", + "memoryCount size must be " + "the same as variable " + + m_Name + " count size " + + std::to_string(m_Count.size()) + + ", in call to SetMemorySelection"); } // TODO might have to remove for reading @@ -210,9 +195,8 @@ void VariableBase::SetMemorySelection(const Box &memorySelection) helper::Throw( "Core", "VariableBase", "SetMemorySelection", "memoyCount[" + indexStr + "]= " + memoryCountStr + - " can not be smaller than variable count[" + indexStr + - "]= " + countStr + " for variable " + m_Name + - ", in call to SetMemorySelection"); + " can not be smaller than variable count[" + indexStr + "]= " + countStr + + " for variable " + m_Name + ", in call to SetMemorySelection"); } } @@ -220,25 +204,18 @@ void VariableBase::SetMemorySelection(const Box &memorySelection) m_MemoryCount = memorySelection.second; } -size_t VariableBase::GetAvailableStepsStart() const -{ - return m_AvailableStepsStart; -} +size_t VariableBase::GetAvailableStepsStart() const { return m_AvailableStepsStart; } -size_t VariableBase::GetAvailableStepsCount() const -{ - return m_AvailableStepsCount; -} +size_t VariableBase::GetAvailableStepsCount() const { return m_AvailableStepsCount; } void VariableBase::SetStepSelection(const Box &boxSteps) { if (boxSteps.second == 0) { - helper::Throw( - "Core", "VariableBase", "SetStepSelection", - "boxSteps.second count argument " - " can't be zero, from variable " + - m_Name + ", in call to SetStepSelection"); + helper::Throw("Core", "VariableBase", "SetStepSelection", + "boxSteps.second count argument " + " can't be zero, from variable " + + m_Name + ", in call to SetStepSelection"); } m_StepsStart = boxSteps.first; @@ -255,8 +232,7 @@ void VariableBase::SetStepSelection(const Box &boxSteps) } } -size_t VariableBase::AddOperation(const std::string &type, - const Params ¶meters) noexcept +size_t VariableBase::AddOperation(const std::string &type, const Params ¶meters) noexcept { auto op = MakeOperator(type, parameters); if (op->IsDataTypeValid(m_Type)) @@ -266,9 +242,8 @@ size_t VariableBase::AddOperation(const std::string &type, else { helper::Log("Variable", "VariableBase", "AddOperation", - "Operator " + op->m_TypeString + - " does not support data type " + ToString(m_Type) + - ", operator not added", + "Operator " + op->m_TypeString + " does not support data type " + + ToString(m_Type) + ", operator not added", helper::LogMode::WARNING); } return m_Operations.size() - 1; @@ -282,8 +257,7 @@ size_t VariableBase::AddOperation(std::shared_ptr op) noexcept void VariableBase::RemoveOperations() noexcept { m_Operations.clear(); } -void VariableBase::SetOperationParameter(const size_t operationID, - const std::string key, +void VariableBase::SetOperationParameter(const size_t operationID, const std::string key, const std::string value) { if (operationID >= m_Operations.size()) @@ -333,12 +307,11 @@ void VariableBase::CheckRandomAccessConflict(const std::string hint) const { if (m_RandomAccess && !m_FirstStreamingStep) { - helper::Throw( - "Core", "VariableBase", "CheckRandomAccessConflict", - "can't mix streaming and " - "random-access (call to SetStepSelection)" - "for variable " + - m_Name + ", " + hint); + helper::Throw("Core", "VariableBase", "CheckRandomAccessConflict", + "can't mix streaming and " + "random-access (call to SetStepSelection)" + "for variable " + + m_Name + ", " + hint); } } @@ -367,10 +340,8 @@ std::map VariableBase::GetAttributesInfo(core::IO &io, const std::string separator, const bool fullNameKeys) const noexcept { - auto lf_GetAttributeInfo = [](const std::string &prefix, - const std::string &attributeName, - core::IO &io, - std::map &attributesInfo, + auto lf_GetAttributeInfo = [](const std::string &prefix, const std::string &attributeName, + core::IO &io, std::map &attributesInfo, const bool fullNameKeys) { if (attributeName.compare(0, prefix.size(), prefix) != 0) { @@ -379,8 +350,7 @@ VariableBase::GetAttributesInfo(core::IO &io, const std::string separator, auto itAttribute = io.GetAttributes().find(attributeName); - const std::string key = - fullNameKeys ? attributeName : attributeName.substr(prefix.size()); + const std::string key = fullNameKeys ? attributeName : attributeName.substr(prefix.size()); if (itAttribute->second->m_Type == DataType::Struct) { @@ -400,8 +370,7 @@ VariableBase::GetAttributesInfo(core::IO &io, const std::string separator, // get prefixed attributes from stored attributes for (const std::string &attributeName : m_PrefixedAttributes) { - lf_GetAttributeInfo(prefix, attributeName, io, attributesInfo, - fullNameKeys); + lf_GetAttributeInfo(prefix, attributeName, io, attributesInfo, fullNameKeys); } } else @@ -409,8 +378,7 @@ VariableBase::GetAttributesInfo(core::IO &io, const std::string separator, for (const auto &attributePair : io.GetAttributes()) { const std::string &attributeName = attributePair.first; - lf_GetAttributeInfo(prefix, attributeName, io, attributesInfo, - fullNameKeys); + lf_GetAttributeInfo(prefix, attributeName, io, attributesInfo, fullNameKeys); } } @@ -454,17 +422,15 @@ void VariableBase::InitShapeType() { if (std::count(m_Shape.begin(), m_Shape.end(), JoinedDim) == 1) { - if (!m_Start.empty() && - static_cast(std::count(m_Start.begin(), m_Start.end(), - 0)) != m_Start.size()) + if (!m_Start.empty() && static_cast(std::count(m_Start.begin(), m_Start.end(), + 0)) != m_Start.size()) { - helper::Throw( - "Core", "VariableBase", "InitShapeType", - "The Start array must be " - "empty or full-zero when defining " - "a Joined Array in call to " - "DefineVariable " + - m_Name); + helper::Throw("Core", "VariableBase", "InitShapeType", + "The Start array must be " + "empty or full-zero when defining " + "a Joined Array in call to " + "DefineVariable " + + m_Name); } m_ShapeID = ShapeID::JoinedArray; } @@ -496,19 +462,15 @@ void VariableBase::InitShapeType() m_ShapeID = ShapeID::GlobalArray; } } - else if (m_Shape.size() == m_Start.size() && - m_Shape.size() == m_Count.size()) + else if (m_Shape.size() == m_Start.size() && m_Shape.size() == m_Count.size()) { - auto lf_LargerThanError = [&](const unsigned int i, - const std::string dims1, - const size_t dims1Value, - const std::string dims2, + auto lf_LargerThanError = [&](const unsigned int i, const std::string dims1, + const size_t dims1Value, const std::string dims2, const size_t dims2Value) { const std::string iString(std::to_string(i)); helper::Throw( "Core", "VariableBase", "InitShapeType", - dims1 + "[" + iString + - "] = " + std::to_string(dims1Value) + " > " + dims2 + + dims1 + "[" + iString + "] = " + std::to_string(dims1Value) + " > " + dims2 + "[" + iString + "], = " + std::to_string(dims2Value) + " in DefineVariable " + m_Name); }; @@ -517,26 +479,23 @@ void VariableBase::InitShapeType() { if (m_Count[i] > m_Shape[i]) { - lf_LargerThanError(i, "count", m_Count[i], "shape", - m_Shape[i]); + lf_LargerThanError(i, "count", m_Count[i], "shape", m_Shape[i]); } if (m_Start[i] > m_Shape[i]) { - lf_LargerThanError(i, "start", m_Start[i], "shape", - m_Shape[i]); + lf_LargerThanError(i, "start", m_Start[i], "shape", m_Shape[i]); } } m_ShapeID = ShapeID::GlobalArray; } else { - helper::Throw( - "Core", "VariableBase", "InitShapeType", - "the " - "combination of shape, start and count " - "arguments is inconsistent, in call to " - "DefineVariable " + - m_Name); + helper::Throw("Core", "VariableBase", "InitShapeType", + "the " + "combination of shape, start and count " + "arguments is inconsistent, in call to " + "DefineVariable " + + m_Name); } } else @@ -572,47 +531,37 @@ void VariableBase::CheckDimensionsCommon(const std::string hint) const { if (m_ShapeID != ShapeID::LocalValue) { - if ((!m_Shape.empty() && - std::count(m_Shape.begin(), m_Shape.end(), LocalValueDim) > 0) || - (!m_Start.empty() && - std::count(m_Start.begin(), m_Start.end(), LocalValueDim) > 0) || - (!m_Count.empty() && - std::count(m_Count.begin(), m_Count.end(), LocalValueDim) > 0)) + if ((!m_Shape.empty() && std::count(m_Shape.begin(), m_Shape.end(), LocalValueDim) > 0) || + (!m_Start.empty() && std::count(m_Start.begin(), m_Start.end(), LocalValueDim) > 0) || + (!m_Count.empty() && std::count(m_Count.begin(), m_Count.end(), LocalValueDim) > 0)) { - helper::Throw( - "Core", "VariableBase", "CheckDimensionsCommon", - "LocalValueDim parameter is only " - "allowed as {LocalValueDim} in Shape dimensions " + - hint); + helper::Throw("Core", "VariableBase", "CheckDimensionsCommon", + "LocalValueDim parameter is only " + "allowed as {LocalValueDim} in Shape dimensions " + + hint); } } - if ((!m_Shape.empty() && - std::count(m_Shape.begin(), m_Shape.end(), JoinedDim) > 1) || - (!m_Start.empty() && - std::count(m_Start.begin(), m_Start.end(), JoinedDim) > 0) || - (!m_Count.empty() && - std::count(m_Count.begin(), m_Count.end(), JoinedDim) > 0)) + if ((!m_Shape.empty() && std::count(m_Shape.begin(), m_Shape.end(), JoinedDim) > 1) || + (!m_Start.empty() && std::count(m_Start.begin(), m_Start.end(), JoinedDim) > 0) || + (!m_Count.empty() && std::count(m_Count.begin(), m_Count.end(), JoinedDim) > 0)) { - helper::Throw( - "Core", "VariableBase", "CheckDimensionsCommon", - "JoinedDim is only allowed once in " - "Shape and cannot appear in start/count, " + - hint); + helper::Throw("Core", "VariableBase", "CheckDimensionsCommon", + "JoinedDim is only allowed once in " + "Shape and cannot appear in start/count, " + + hint); } } -void VariableBase::CheckRandomAccess(const size_t step, - const std::string hint) const +void VariableBase::CheckRandomAccess(const size_t step, const std::string hint) const { if (!m_FirstStreamingStep && step != DefaultSizeT) { - helper::Throw( - "Core", "Variable", "CheckRandomAccess", - "can't pass a step input in " - "streaming (BeginStep/EndStep)" - "mode for variable " + - m_Name + ", in call to Variable::" + hint); + helper::Throw("Core", "Variable", "CheckRandomAccess", + "can't pass a step input in " + "streaming (BeginStep/EndStep)" + "mode for variable " + + m_Name + ", in call to Variable::" + hint); } } @@ -634,8 +583,7 @@ Dims VariableBase::Shape(const size_t step) const if (m_Engine != nullptr && m_ShapeID == ShapeID::GlobalArray) { - const size_t stepInput = - !m_FirstStreamingStep ? m_Engine->CurrentStep() : step; + const size_t stepInput = !m_FirstStreamingStep ? m_Engine->CurrentStep() : step; const auto it = m_AvailableShapes.find(stepInput + 1); if (it != m_AvailableShapes.end()) diff --git a/source/adios2/core/VariableBase.h b/source/adios2/core/VariableBase.h index a1576460d7..bd888a3828 100644 --- a/source/adios2/core/VariableBase.h +++ b/source/adios2/core/VariableBase.h @@ -59,7 +59,7 @@ class VariableBase #endif ShapeID m_ShapeID = ShapeID::Unknown; ///< see shape types in ADIOSTypes.h - size_t m_BlockID = 0; ///< current block ID for local variables, global = 0 + size_t m_BlockID = 0; ///< current block ID for local variables, global = 0 SelectionType m_SelectionType = SelectionType::BoundingBox; bool m_SingleValue = false; ///< true: single value, false: array @@ -112,9 +112,8 @@ class VariableBase std::set m_PrefixedVariables; std::set m_PrefixedAttributes; - VariableBase(const std::string &name, const DataType type, - const size_t elementSize, const Dims &shape, const Dims &start, - const Dims &count, const bool constantShape); + VariableBase(const std::string &name, const DataType type, const size_t elementSize, + const Dims &shape, const Dims &start, const Dims &count, const bool constantShape); virtual ~VariableBase() = default; @@ -179,8 +178,7 @@ class VariableBase */ size_t AddOperation(std::shared_ptr op) noexcept; - size_t AddOperation(const std::string &op, - const Params ¶meters = Params()) noexcept; + size_t AddOperation(const std::string &op, const Params ¶meters = Params()) noexcept; /** * Removes all current Operations associated with AddOperation. @@ -228,9 +226,8 @@ class VariableBase * @param separator * @return attributes info */ - std::map - GetAttributesInfo(core::IO &io, const std::string separator, - const bool fullNameKeys) const noexcept; + std::map GetAttributesInfo(core::IO &io, const std::string separator, + const bool fullNameKeys) const noexcept; protected: bool m_ConstantDims = false; ///< true: fix m_Shape, m_Start, m_Count diff --git a/source/adios2/core/VariableStruct.cpp b/source/adios2/core/VariableStruct.cpp index 9c73c5141f..5ca6ce7d1d 100644 --- a/source/adios2/core/VariableStruct.cpp +++ b/source/adios2/core/VariableStruct.cpp @@ -22,26 +22,23 @@ StructDefinition::StructDefinition(const std::string &name, const size_t size) { } -void StructDefinition::AddField(const std::string &name, const size_t offset, - const DataType type, const size_t elementcount) +void StructDefinition::AddField(const std::string &name, const size_t offset, const DataType type, + const size_t elementcount) { if (m_Frozen) { - helper::Throw( - "core", "VariableStruct::StructDefinition", "AddField", - "struct definition already frozen"); + helper::Throw("core", "VariableStruct::StructDefinition", "AddField", + "struct definition already frozen"); } if (type == DataType::None || type == DataType::Struct) { - helper::Throw("core", - "VariableStruct::StructDefinition", - "AddField", "invalid data type"); + helper::Throw("core", "VariableStruct::StructDefinition", "AddField", + "invalid data type"); } if (offset + helper::GetDataTypeSize(type) * elementcount > m_StructSize) { - helper::Throw("core", - "VariableStruct::StructDefinition", - "AddField", "exceeded struct size"); + helper::Throw("core", "VariableStruct::StructDefinition", "AddField", + "exceeded struct size"); } m_Definition.emplace_back(); auto &d = m_Definition.back(); @@ -63,9 +60,8 @@ std::string StructDefinition::Name(const size_t index) const { if (index >= m_Definition.size()) { - helper::Throw("core", - "VariableStruct::StructDefinition", - "Name", "invalid index"); + helper::Throw("core", "VariableStruct::StructDefinition", "Name", + "invalid index"); } return m_Definition[index].Name; } @@ -74,9 +70,8 @@ size_t StructDefinition::Offset(const size_t index) const { if (index >= m_Definition.size()) { - helper::Throw("core", - "VariableStruct::StructDefinition", - "Offset", "invalid index"); + helper::Throw("core", "VariableStruct::StructDefinition", "Offset", + "invalid index"); } return m_Definition[index].Offset; } @@ -85,9 +80,8 @@ DataType StructDefinition::Type(const size_t index) const { if (index >= m_Definition.size()) { - helper::Throw("core", - "VariableStruct::StructDefinition", - "Type", "invalid index"); + helper::Throw("core", "VariableStruct::StructDefinition", "Type", + "invalid index"); } return m_Definition[index].Type; } @@ -96,40 +90,28 @@ size_t StructDefinition::ElementCount(const size_t index) const { if (index >= m_Definition.size()) { - helper::Throw("core", - "VariableStruct::StructDefinition", + helper::Throw("core", "VariableStruct::StructDefinition", "ElementCount", "invalid index"); } return m_Definition[index].ElementCount; } -VariableStruct::VariableStruct(const std::string &name, - const StructDefinition &def, const Dims &shape, - const Dims &start, const Dims &count, +VariableStruct::VariableStruct(const std::string &name, const StructDefinition &def, + const Dims &shape, const Dims &start, const Dims &count, const bool constantDims) -: VariableBase(name, DataType::Struct, def.StructSize(), shape, start, count, - constantDims) +: VariableBase(name, DataType::Struct, def.StructSize(), shape, start, count, constantDims) { m_WriteStructDefinition = const_cast(&def); m_ReadStructDefinition = nullptr; } -void VariableStruct::SetData(const void *data) noexcept -{ - m_Data = const_cast(data); -} +void VariableStruct::SetData(const void *data) noexcept { m_Data = const_cast(data); } void *VariableStruct::GetData() const noexcept { return m_Data; } -StructDefinition *VariableStruct::GetWriteStructDef() noexcept -{ - return m_WriteStructDefinition; -} +StructDefinition *VariableStruct::GetWriteStructDef() noexcept { return m_WriteStructDefinition; } -StructDefinition *VariableStruct::GetReadStructDef() noexcept -{ - return m_ReadStructDefinition; -} +StructDefinition *VariableStruct::GetReadStructDef() noexcept { return m_ReadStructDefinition; } void VariableStruct::SetReadStructDef(const StructDefinition *def) { diff --git a/source/adios2/core/VariableStruct.h b/source/adios2/core/VariableStruct.h index aab9e40f37..f9d7f7eec6 100644 --- a/source/adios2/core/VariableStruct.h +++ b/source/adios2/core/VariableStruct.h @@ -31,8 +31,8 @@ class StructDefinition }; StructDefinition(const std::string &name, const size_t size); - void AddField(const std::string &name, const size_t offset, - const DataType type, const size_t size = 1); + void AddField(const std::string &name, const size_t offset, const DataType type, + const size_t size = 1); void Freeze() noexcept; size_t StructSize() const noexcept; std::string StructName() const noexcept; @@ -78,9 +78,8 @@ class VariableStruct : public VariableBase std::vector m_BlocksInfo; - VariableStruct(const std::string &name, const StructDefinition &def, - const Dims &shape, const Dims &start, const Dims &count, - const bool constantDims); + VariableStruct(const std::string &name, const StructDefinition &def, const Dims &shape, + const Dims &start, const Dims &count, const bool constantDims); ~VariableStruct() = default; diff --git a/source/adios2/engine/bp3/BP3Reader.cpp b/source/adios2/engine/bp3/BP3Reader.cpp index 63416a6eed..af6227dde6 100644 --- a/source/adios2/engine/bp3/BP3Reader.cpp +++ b/source/adios2/engine/bp3/BP3Reader.cpp @@ -21,8 +21,7 @@ namespace core namespace engine { -BP3Reader::BP3Reader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +BP3Reader::BP3Reader(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("BP3", io, name, mode, std::move(comm)), m_BP3Deserializer(m_Comm), m_FileManager(io, m_Comm), m_SubFileManager(io, m_Comm) { @@ -45,21 +44,19 @@ StepStatus BP3Reader::BeginStep(StepMode mode, const float timeoutSeconds) PERFSTUBS_SCOPED_TIMER("BP3Reader::BeginStep"); if (mode != StepMode::Read) { - helper::Throw( - "Engine", "BP3Reader", "BeginStep", - "mode is not supported yet, " - "only Read is valid for " - "engine BP3 with adios2::Mode::Read, in call to " - "BeginStep"); + helper::Throw("Engine", "BP3Reader", "BeginStep", + "mode is not supported yet, " + "only Read is valid for " + "engine BP3 with adios2::Mode::Read, in call to " + "BeginStep"); } if (!m_BP3Deserializer.m_DeferredVariables.empty()) { - helper::Throw( - "Engine", "BP3Reader", "BeginStep", - "existing variables subscribed with " - "GetDeferred, did you forget to call " - "PerformGets() or EndStep()?, in call to BeginStep"); + helper::Throw("Engine", "BP3Reader", "BeginStep", + "existing variables subscribed with " + "GetDeferred, did you forget to call " + "PerformGets() or EndStep()?, in call to BeginStep"); } if (m_BetweenStepPairs) @@ -100,9 +97,8 @@ void BP3Reader::EndStep() { if (!m_BetweenStepPairs) { - helper::Throw( - "Engine", "BP3Reader", "EndStep", - "EndStep() is called without a successful BeginStep()"); + helper::Throw("Engine", "BP3Reader", "EndStep", + "EndStep() is called without a successful BeginStep()"); } m_BetweenStepPairs = false; PERFSTUBS_SCOPED_TIMER("BP3Reader::EndStep"); @@ -124,17 +120,16 @@ void BP3Reader::PerformGets() if (type == DataType::Struct) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - Variable &variable = \ - FindVariable(name, "in call to PerformGets, EndStep or Close"); \ - for (auto &blockInfo : variable.m_BlocksInfo) \ - { \ - m_BP3Deserializer.SetVariableBlockInfo(variable, blockInfo); \ - } \ - ReadVariableBlocks(variable); \ - variable.m_BlocksInfo.clear(); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + Variable &variable = FindVariable(name, "in call to PerformGets, EndStep or Close"); \ + for (auto &blockInfo : variable.m_BlocksInfo) \ + { \ + m_BP3Deserializer.SetVariableBlockInfo(variable, blockInfo); \ + } \ + ReadVariableBlocks(variable); \ + variable.m_BlocksInfo.clear(); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -148,9 +143,9 @@ void BP3Reader::Init() { if (m_OpenMode != Mode::Read) { - helper::Throw( - "Engine", "BP3Reader", "Init", - "BPFileReader only supports OpenMode::Read from" + m_Name); + helper::Throw("Engine", "BP3Reader", "Init", + "BPFileReader only supports OpenMode::Read from" + + m_Name); } // if IO was involved in reading before this flag may be true now @@ -176,14 +171,14 @@ void BP3Reader::InitTransports() const bool profile = m_BP3Deserializer.m_Profiler.m_IsActive; try { - m_FileManager.OpenFiles({m_Name}, adios2::Mode::Read, - m_IO.m_TransportsParameters, profile); + m_FileManager.OpenFiles({m_Name}, adios2::Mode::Read, m_IO.m_TransportsParameters, + profile); } catch (...) { const std::string bpName = helper::AddExtension(m_Name, ".bp"); - m_FileManager.OpenFiles({bpName}, adios2::Mode::Read, - m_IO.m_TransportsParameters, profile); + m_FileManager.OpenFiles({bpName}, adios2::Mode::Read, m_IO.m_TransportsParameters, + profile); } } } @@ -197,8 +192,7 @@ void BP3Reader::InitBuffer() // buffer // Load/Read Minifooter - const size_t miniFooterSize = - m_BP3Deserializer.m_MetadataSet.MiniFooterSize; + const size_t miniFooterSize = m_BP3Deserializer.m_MetadataSet.MiniFooterSize; if (fileSize < miniFooterSize) { std::string err = "The size of the input file " + m_Name + "(" + @@ -209,30 +203,26 @@ void BP3Reader::InitBuffer() " It is unlikely that this is a .bp file."; helper::Throw("Engine", "BP3Reader", "Init", err); } - const size_t miniFooterStart = - helper::GetDistance(fileSize, miniFooterSize, - " fileSize < miniFooterSize, in call to Open"); + const size_t miniFooterStart = helper::GetDistance( + fileSize, miniFooterSize, " fileSize < miniFooterSize, in call to Open"); m_BP3Deserializer.m_Metadata.Resize( - miniFooterSize, - "allocating metadata buffer to inspect bp minifooter, in call to " - "Open"); + miniFooterSize, "allocating metadata buffer to inspect bp minifooter, in call to " + "Open"); - m_FileManager.ReadFile(m_BP3Deserializer.m_Metadata.m_Buffer.data(), - miniFooterSize, miniFooterStart); + m_FileManager.ReadFile(m_BP3Deserializer.m_Metadata.m_Buffer.data(), miniFooterSize, + miniFooterStart); // Load/Read Metadata - const size_t metadataStart = - m_BP3Deserializer.MetadataStart(m_BP3Deserializer.m_Metadata); - const size_t metadataSize = - helper::GetDistance(fileSize, metadataStart, - " fileSize < miniFooterSize, in call to Open"); + const size_t metadataStart = m_BP3Deserializer.MetadataStart(m_BP3Deserializer.m_Metadata); + const size_t metadataSize = helper::GetDistance( + fileSize, metadataStart, " fileSize < miniFooterSize, in call to Open"); - m_BP3Deserializer.m_Metadata.Resize( - metadataSize, "allocating metadata buffer, in call to Open"); + m_BP3Deserializer.m_Metadata.Resize(metadataSize, + "allocating metadata buffer, in call to Open"); - m_FileManager.ReadFile(m_BP3Deserializer.m_Metadata.m_Buffer.data(), - metadataSize, metadataStart); + m_FileManager.ReadFile(m_BP3Deserializer.m_Metadata.m_Buffer.data(), metadataSize, + metadataStart); } // broadcast metadata buffer to all ranks from zero @@ -244,16 +234,16 @@ void BP3Reader::InitBuffer() m_IO.SetPrefixedNames(false); } -#define declare_type(T) \ - void BP3Reader::DoGetSync(Variable &variable, T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("BP3Reader::Get"); \ - GetSyncCommon(variable, data); \ - } \ - void BP3Reader::DoGetDeferred(Variable &variable, T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("BP3Reader::Get"); \ - GetDeferredCommon(variable, data); \ +#define declare_type(T) \ + void BP3Reader::DoGetSync(Variable &variable, T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("BP3Reader::Get"); \ + GetSyncCommon(variable, data); \ + } \ + void BP3Reader::DoGetDeferred(Variable &variable, T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("BP3Reader::Get"); \ + GetDeferredCommon(variable, data); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -267,35 +257,32 @@ void BP3Reader::DoClose(const int transportIndex) m_FileManager.CloseFiles(); } -#define declare_type(T) \ - std::map::BPInfo>> \ - BP3Reader::DoAllStepsBlocksInfo(const Variable &variable) const \ - { \ - PERFSTUBS_SCOPED_TIMER("BP3Reader::AllStepsBlocksInfo"); \ - return m_BP3Deserializer.AllStepsBlocksInfo(variable); \ - } \ - \ - std::vector::BPInfo>> \ - BP3Reader::DoAllRelativeStepsBlocksInfo(const Variable &variable) const \ - { \ - PERFSTUBS_SCOPED_TIMER("BP3Reader::AllRelativeStepsBlocksInfo"); \ - return m_BP3Deserializer.AllRelativeStepsBlocksInfo(variable); \ - } \ - \ - std::vector::BPInfo> BP3Reader::DoBlocksInfo( \ - const Variable &variable, const size_t step) const \ - { \ - PERFSTUBS_SCOPED_TIMER("BP3Reader::BlocksInfo"); \ - return m_BP3Deserializer.BlocksInfo(variable, step); \ +#define declare_type(T) \ + std::map::BPInfo>> BP3Reader::DoAllStepsBlocksInfo( \ + const Variable &variable) const \ + { \ + PERFSTUBS_SCOPED_TIMER("BP3Reader::AllStepsBlocksInfo"); \ + return m_BP3Deserializer.AllStepsBlocksInfo(variable); \ + } \ + \ + std::vector::BPInfo>> \ + BP3Reader::DoAllRelativeStepsBlocksInfo(const Variable &variable) const \ + { \ + PERFSTUBS_SCOPED_TIMER("BP3Reader::AllRelativeStepsBlocksInfo"); \ + return m_BP3Deserializer.AllRelativeStepsBlocksInfo(variable); \ + } \ + \ + std::vector::BPInfo> BP3Reader::DoBlocksInfo(const Variable &variable, \ + const size_t step) const \ + { \ + PERFSTUBS_SCOPED_TIMER("BP3Reader::BlocksInfo"); \ + return m_BP3Deserializer.BlocksInfo(variable, step); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type -size_t BP3Reader::DoSteps() const -{ - return m_BP3Deserializer.m_MetadataSet.StepsCount; -} +size_t BP3Reader::DoSteps() const { return m_BP3Deserializer.m_MetadataSet.StepsCount; } } // end namespace engine } // end namespace core diff --git a/source/adios2/engine/bp3/BP3Reader.h b/source/adios2/engine/bp3/BP3Reader.h index 296bc30a65..a512d4fb6e 100644 --- a/source/adios2/engine/bp3/BP3Reader.h +++ b/source/adios2/engine/bp3/BP3Reader.h @@ -35,13 +35,11 @@ class BP3Reader : public Engine * @param openMode only read * @param comm */ - BP3Reader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + BP3Reader(IO &io, const std::string &name, const Mode mode, helper::Comm comm); ~BP3Reader(); - StepStatus BeginStep(StepMode mode = StepMode::Read, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode = StepMode::Read, const float timeoutSeconds = -1.0) final; size_t CurrentStep() const final; @@ -65,8 +63,8 @@ class BP3Reader : public Engine void InitTransports(); void InitBuffer(); -#define declare_type(T) \ - void DoGetSync(Variable &, T *) final; \ +#define declare_type(T) \ + void DoGetSync(Variable &, T *) final; \ void DoGetDeferred(Variable &, T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -82,15 +80,15 @@ class BP3Reader : public Engine template void ReadVariableBlocks(Variable &variable); -#define declare_type(T) \ - std::map::BPInfo>> \ - DoAllStepsBlocksInfo(const Variable &) const final; \ - \ - std::vector::BPInfo>> \ - DoAllRelativeStepsBlocksInfo(const Variable &) const final; \ - \ - std::vector::BPInfo> DoBlocksInfo( \ - const Variable &variable, const size_t step) const final; +#define declare_type(T) \ + std::map::BPInfo>> DoAllStepsBlocksInfo( \ + const Variable &) const final; \ + \ + std::vector::BPInfo>> DoAllRelativeStepsBlocksInfo( \ + const Variable &) const final; \ + \ + std::vector::BPInfo> DoBlocksInfo(const Variable &variable, \ + const size_t step) const final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/bp3/BP3Reader.tcc b/source/adios2/engine/bp3/BP3Reader.tcc index 6331307f5e..539754952b 100644 --- a/source/adios2/engine/bp3/BP3Reader.tcc +++ b/source/adios2/engine/bp3/BP3Reader.tcc @@ -23,8 +23,7 @@ namespace engine { template <> -inline void BP3Reader::GetSyncCommon(Variable &variable, - std::string *data) +inline void BP3Reader::GetSyncCommon(Variable &variable, std::string *data) { m_BP3Deserializer.GetValueFromMetadata(variable, data); } @@ -71,8 +70,7 @@ void BP3Reader::ReadVariableBlocks(Variable &variable) for (const auto &stepPair : blockInfo.StepBlockSubStreamsInfo) { - for (const helper::SubStreamBoxInfo &subStreamBoxInfo : - stepPair.second) + for (const helper::SubStreamBoxInfo &subStreamBoxInfo : stepPair.second) { if (subStreamBoxInfo.ZeroBlock) { @@ -80,32 +78,27 @@ void BP3Reader::ReadVariableBlocks(Variable &variable) } // check if subfile is already opened - if (m_SubFileManager.m_Transports.count( - subStreamBoxInfo.SubStreamID) == 0) + if (m_SubFileManager.m_Transports.count(subStreamBoxInfo.SubStreamID) == 0) { - const std::string subFileName = - m_BP3Deserializer.GetBPSubFileName( - m_Name, subStreamBoxInfo.SubStreamID, - m_BP3Deserializer.m_Minifooter.HasSubFiles, true); - - m_SubFileManager.OpenFileID( - subFileName, subStreamBoxInfo.SubStreamID, Mode::Read, - {{"transport", "File"}}, profile); + const std::string subFileName = m_BP3Deserializer.GetBPSubFileName( + m_Name, subStreamBoxInfo.SubStreamID, + m_BP3Deserializer.m_Minifooter.HasSubFiles, true); + + m_SubFileManager.OpenFileID(subFileName, subStreamBoxInfo.SubStreamID, + Mode::Read, {{"transport", "File"}}, profile); } char *buffer = nullptr; size_t payloadSize = 0, payloadStart = 0; - m_BP3Deserializer.PreDataRead(variable, blockInfo, - subStreamBoxInfo, buffer, + m_BP3Deserializer.PreDataRead(variable, blockInfo, subStreamBoxInfo, buffer, payloadSize, payloadStart, 0); m_SubFileManager.ReadFile(buffer, payloadSize, payloadStart, subStreamBoxInfo.SubStreamID); - m_BP3Deserializer.PostDataRead( - variable, blockInfo, subStreamBoxInfo, - m_IO.m_ArrayOrder == ArrayOrdering::RowMajor, 0); + m_BP3Deserializer.PostDataRead(variable, blockInfo, subStreamBoxInfo, + m_IO.m_ArrayOrder == ArrayOrdering::RowMajor, 0); } // substreams loop // advance pointer to next step blockInfo.Data += helper::GetTotalSize(blockInfo.Count); diff --git a/source/adios2/engine/bp3/BP3Writer.cpp b/source/adios2/engine/bp3/BP3Writer.cpp index 1f1618832e..7537de2796 100644 --- a/source/adios2/engine/bp3/BP3Writer.cpp +++ b/source/adios2/engine/bp3/BP3Writer.cpp @@ -25,8 +25,7 @@ namespace core namespace engine { -BP3Writer::BP3Writer(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +BP3Writer::BP3Writer(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("BP3", io, name, mode, std::move(comm)), m_BP3Serializer(m_Comm), m_FileDataManager(io, m_Comm), m_FileMetadataManager(io, m_Comm) { @@ -54,10 +53,7 @@ StepStatus BP3Writer::BeginStep(StepMode mode, const float timeoutSeconds) return StepStatus::OK; } -size_t BP3Writer::CurrentStep() const -{ - return m_BP3Serializer.m_MetadataSet.CurrentStep; -} +size_t BP3Writer::CurrentStep() const { return m_BP3Serializer.m_MetadataSet.CurrentStep; } void BP3Writer::PerformPuts() { @@ -77,12 +73,12 @@ void BP3Writer::PerformPuts() { // not supported } -#define declare_template_instantiation(T) \ - else if (type == helper::GetDataType()) \ - { \ - Variable &variable = FindVariable( \ - variableName, "in call to PerformPuts, EndStep or Close"); \ - PerformPutCommon(variable); \ +#define declare_template_instantiation(T) \ + else if (type == helper::GetDataType()) \ + { \ + Variable &variable = \ + FindVariable(variableName, "in call to PerformPuts, EndStep or Close"); \ + PerformPutCommon(variable); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_template_instantiation) @@ -131,37 +127,35 @@ void BP3Writer::Init() if (m_BP3Serializer.m_Parameters.NumAggregators < static_cast(m_BP3Serializer.m_SizeMPI)) { - m_BP3Serializer.m_Aggregator.Init( - m_BP3Serializer.m_Parameters.NumAggregators, - m_BP3Serializer.m_Parameters.NumAggregators, m_Comm); + m_BP3Serializer.m_Aggregator.Init(m_BP3Serializer.m_Parameters.NumAggregators, + m_BP3Serializer.m_Parameters.NumAggregators, m_Comm); } InitTransports(); InitBPBuffer(); } -#define declare_type(T) \ - void BP3Writer::DoPut(Variable &variable, \ - typename Variable::Span &span, \ - const bool initialize, const T &value) \ - { \ - PERFSTUBS_SCOPED_TIMER("BP3Writer::Put"); \ - PutCommon(variable, span, 0, value); \ +#define declare_type(T) \ + void BP3Writer::DoPut(Variable &variable, typename Variable::Span &span, \ + const bool initialize, const T &value) \ + { \ + PERFSTUBS_SCOPED_TIMER("BP3Writer::Put"); \ + PutCommon(variable, span, 0, value); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type -#define declare_type(T) \ - void BP3Writer::DoPutSync(Variable &variable, const T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("BP3Writer::Put"); \ - PutSyncCommon(variable, variable.SetBlockInfo(data, CurrentStep())); \ - variable.m_BlocksInfo.pop_back(); \ - } \ - void BP3Writer::DoPutDeferred(Variable &variable, const T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("BP3Writer::Put"); \ - PutDeferredCommon(variable, data); \ +#define declare_type(T) \ + void BP3Writer::DoPutSync(Variable &variable, const T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("BP3Writer::Put"); \ + PutSyncCommon(variable, variable.SetBlockInfo(data, CurrentStep())); \ + variable.m_BlocksInfo.pop_back(); \ + } \ + void BP3Writer::DoPutDeferred(Variable &variable, const T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("BP3Writer::Put"); \ + PutDeferredCommon(variable, data); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) @@ -191,16 +185,14 @@ void BP3Writer::InitTransports() { // Names passed to IO AddTransport option with key "Name" const std::vector transportsNames = - m_FileDataManager.GetFilesBaseNames(m_Name, - m_IO.m_TransportsParameters); + m_FileDataManager.GetFilesBaseNames(m_Name, m_IO.m_TransportsParameters); // /path/name.bp.dir/name.bp.rank bpSubStreamNames = m_BP3Serializer.GetBPSubStreamNames(transportsNames); } m_BP3Serializer.m_Profiler.Start("mkdir"); - m_FileDataManager.MkDirsBarrier(bpSubStreamNames, - m_IO.m_TransportsParameters, + m_FileDataManager.MkDirsBarrier(bpSubStreamNames, m_IO.m_TransportsParameters, m_BP3Serializer.m_Parameters.NodeLocal); m_BP3Serializer.m_Profiler.Stop("mkdir"); @@ -213,8 +205,7 @@ void BP3Writer::InitTransports() m_IO.m_TransportsParameters[i]["asyncopen"] = "true"; } } - m_FileDataManager.OpenFiles(bpSubStreamNames, m_OpenMode, - m_IO.m_TransportsParameters, + m_FileDataManager.OpenFiles(bpSubStreamNames, m_OpenMode, m_IO.m_TransportsParameters, m_BP3Serializer.m_Profiler.m_IsActive); } } @@ -223,18 +214,16 @@ void BP3Writer::InitBPBuffer() { if (m_OpenMode == Mode::Append) { - helper::Throw( - "Engine", "BP3Writer", "InitBPBuffer", - "Mode::Append is only available in " - "BP4; it is not implemented " - "for BP3 files."); + helper::Throw("Engine", "BP3Writer", "InitBPBuffer", + "Mode::Append is only available in " + "BP4; it is not implemented " + "for BP3 files."); // TODO: Get last pg timestep and update timestep counter in } else { m_BP3Serializer.PutProcessGroupIndex( - m_IO.m_Name, - (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", + m_IO.m_Name, (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", m_FileDataManager.GetTransportsTypes()); } } @@ -266,14 +255,12 @@ void BP3Writer::DoClose(const int transportIndex) m_FileDataManager.CloseFiles(transportIndex); } - if (m_BP3Serializer.m_Parameters.CollectiveMetadata && - m_FileDataManager.AllTransportsClosed()) + if (m_BP3Serializer.m_Parameters.CollectiveMetadata && m_FileDataManager.AllTransportsClosed()) { WriteCollectiveMetadataFile(true); } - if (m_BP3Serializer.m_Profiler.m_IsActive && - m_FileDataManager.AllTransportsClosed()) + if (m_BP3Serializer.m_Profiler.m_IsActive && m_FileDataManager.AllTransportsClosed()) { WriteProfilingJSONFile(); } @@ -301,19 +288,15 @@ void BP3Writer::WriteProfilingJSONFile() auto transportTypesMD = m_FileMetadataManager.GetTransportsTypes(); auto transportProfilersMD = m_FileMetadataManager.GetTransportsProfilers(); - transportTypes.insert(transportTypes.end(), transportTypesMD.begin(), - transportTypesMD.end()); + transportTypes.insert(transportTypes.end(), transportTypesMD.begin(), transportTypesMD.end()); - transportProfilers.insert(transportProfilers.end(), - transportProfilersMD.begin(), + transportProfilers.insert(transportProfilers.end(), transportProfilersMD.begin(), transportProfilersMD.end()); - const std::string lineJSON(m_BP3Serializer.GetRankProfilingJSON( - transportTypes, transportProfilers) + - ",\n"); + const std::string lineJSON( + m_BP3Serializer.GetRankProfilingJSON(transportTypes, transportProfilers) + ",\n"); - const std::vector profilingJSON( - m_BP3Serializer.AggregateProfilingJSON(lineJSON)); + const std::vector profilingJSON(m_BP3Serializer.AggregateProfilingJSON(lineJSON)); if (m_BP3Serializer.m_RankMPI == 0) { @@ -328,11 +311,10 @@ void BP3Writer::WriteProfilingJSONFile() else { // write profile to _profiling.json - auto transportsNames = m_FileMetadataManager.GetFilesBaseNames( - m_Name, m_IO.m_TransportsParameters); + auto transportsNames = + m_FileMetadataManager.GetFilesBaseNames(m_Name, m_IO.m_TransportsParameters); - auto bpMetadataFileNames = - m_BP3Serializer.GetBPMetadataFileNames(transportsNames); + auto bpMetadataFileNames = m_BP3Serializer.GetBPMetadataFileNames(transportsNames); profileFileName = bpMetadataFileNames[0] + "_profiling.json"; } profilingJSONStream.Open(profileFileName, Mode::Write); @@ -344,15 +326,13 @@ void BP3Writer::WriteProfilingJSONFile() void BP3Writer::WriteCollectiveMetadataFile(const bool isFinal) { PERFSTUBS_SCOPED_TIMER("BP3Writer::WriteCollectiveMetadataFile"); - m_BP3Serializer.AggregateCollectiveMetadata( - m_Comm, m_BP3Serializer.m_Metadata, true); + m_BP3Serializer.AggregateCollectiveMetadata(m_Comm, m_BP3Serializer.m_Metadata, true); if (m_BP3Serializer.m_RankMPI == 0) { // first init metadata files const std::vector transportsNames = - m_FileMetadataManager.GetFilesBaseNames( - m_Name, m_IO.m_TransportsParameters); + m_FileMetadataManager.GetFilesBaseNames(m_Name, m_IO.m_TransportsParameters); const std::vector bpMetadataFileNames = m_BP3Serializer.GetBPMetadataFileNames(transportsNames); @@ -361,9 +341,8 @@ void BP3Writer::WriteCollectiveMetadataFile(const bool isFinal) m_IO.m_TransportsParameters, m_BP3Serializer.m_Profiler.m_IsActive); - m_FileMetadataManager.WriteFiles( - m_BP3Serializer.m_Metadata.m_Buffer.data(), - m_BP3Serializer.m_Metadata.m_Position); + m_FileMetadataManager.WriteFiles(m_BP3Serializer.m_Metadata.m_Buffer.data(), + m_BP3Serializer.m_Metadata.m_Position); m_FileMetadataManager.CloseFiles(); if (!isFinal) @@ -389,8 +368,7 @@ void BP3Writer::WriteData(const bool isFinal, const int transportIndex) m_BP3Serializer.CloseStream(m_IO); } - m_FileDataManager.WriteFiles(m_BP3Serializer.m_Data.m_Buffer.data(), - dataSize, transportIndex); + m_FileDataManager.WriteFiles(m_BP3Serializer.m_Data.m_Buffer.data(), dataSize, transportIndex); m_FileDataManager.FlushFiles(transportIndex); } @@ -406,25 +384,20 @@ void BP3Writer::AggregateWriteData(const bool isFinal, const int transportIndex) aggregator::MPIChain::ExchangeRequests dataRequests = m_BP3Serializer.m_Aggregator.IExchange(m_BP3Serializer.m_Data, r); - aggregator::MPIChain::ExchangeAbsolutePositionRequests - absolutePositionRequests = - m_BP3Serializer.m_Aggregator.IExchangeAbsolutePosition( - m_BP3Serializer.m_Data, r); + aggregator::MPIChain::ExchangeAbsolutePositionRequests absolutePositionRequests = + m_BP3Serializer.m_Aggregator.IExchangeAbsolutePosition(m_BP3Serializer.m_Data, r); if (m_BP3Serializer.m_Aggregator.m_IsAggregator) { const format::Buffer &bufferSTL = - m_BP3Serializer.m_Aggregator.GetConsumerBuffer( - m_BP3Serializer.m_Data); + m_BP3Serializer.m_Aggregator.GetConsumerBuffer(m_BP3Serializer.m_Data); - m_FileDataManager.WriteFiles(bufferSTL.Data(), bufferSTL.m_Position, - transportIndex); + m_FileDataManager.WriteFiles(bufferSTL.Data(), bufferSTL.m_Position, transportIndex); m_FileDataManager.FlushFiles(transportIndex); } - m_BP3Serializer.m_Aggregator.WaitAbsolutePosition( - absolutePositionRequests, r); + m_BP3Serializer.m_Aggregator.WaitAbsolutePosition(absolutePositionRequests, r); m_BP3Serializer.m_Aggregator.Wait(dataRequests, r); m_BP3Serializer.m_Aggregator.SwapBuffers(r); @@ -437,13 +410,13 @@ void BP3Writer::AggregateWriteData(const bool isFinal, const int transportIndex) format::BufferSTL &bufferSTL = m_BP3Serializer.m_Data; m_BP3Serializer.ResetBuffer(bufferSTL, false, false); - m_BP3Serializer.AggregateCollectiveMetadata( - m_BP3Serializer.m_Aggregator.m_Comm, bufferSTL, false); + m_BP3Serializer.AggregateCollectiveMetadata(m_BP3Serializer.m_Aggregator.m_Comm, bufferSTL, + false); if (m_BP3Serializer.m_Aggregator.m_IsAggregator) { - m_FileDataManager.WriteFiles(bufferSTL.m_Buffer.data(), - bufferSTL.m_Position, transportIndex); + m_FileDataManager.WriteFiles(bufferSTL.m_Buffer.data(), bufferSTL.m_Position, + transportIndex); m_FileDataManager.FlushFiles(transportIndex); } @@ -454,12 +427,11 @@ void BP3Writer::AggregateWriteData(const bool isFinal, const int transportIndex) m_BP3Serializer.m_Aggregator.ResetBuffers(); } -#define declare_type(T, L) \ - T *BP3Writer::DoBufferData_##L(const int bufferIdx, \ - const size_t payloadPosition, \ - const size_t bufferID) noexcept \ - { \ - return BufferDataCommon(bufferIdx, payloadPosition, bufferID); \ +#define declare_type(T, L) \ + T *BP3Writer::DoBufferData_##L(const int bufferIdx, const size_t payloadPosition, \ + const size_t bufferID) noexcept \ + { \ + return BufferDataCommon(bufferIdx, payloadPosition, bufferID); \ } ADIOS2_FOREACH_PRIMITVE_STDTYPE_2ARGS(declare_type) diff --git a/source/adios2/engine/bp3/BP3Writer.h b/source/adios2/engine/bp3/BP3Writer.h index 37cbb16e14..4b9dc30585 100644 --- a/source/adios2/engine/bp3/BP3Writer.h +++ b/source/adios2/engine/bp3/BP3Writer.h @@ -34,13 +34,11 @@ class BP3Writer : public core::Engine * @param openMode w (supported), r, a from OpenMode in ADIOSTypes.h * @param comm multi-process communicator */ - BP3Writer(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + BP3Writer(IO &io, const std::string &name, const Mode mode, helper::Comm comm); ~BP3Writer(); - StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode, const float timeoutSeconds = -1.0) final; size_t CurrentStep() const final; void PerformPuts() final; void EndStep() final; @@ -70,27 +68,26 @@ class BP3Writer : public core::Engine /** Allocates memory and starts a PG group */ void InitBPBuffer(); -#define declare_type(T) \ - void DoPut(Variable &variable, typename Variable::Span &span, \ - const bool initialize, const T &value) final; +#define declare_type(T) \ + void DoPut(Variable &variable, typename Variable::Span &span, const bool initialize, \ + const T &value) final; ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type -#define declare_type(T) \ - void DoPutSync(Variable &, const T *) final; \ +#define declare_type(T) \ + void DoPutSync(Variable &, const T *) final; \ void DoPutDeferred(Variable &, const T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type template - void PutCommon(Variable &variable, typename Variable::Span &span, - const size_t bufferID, const T &value); + void PutCommon(Variable &variable, typename Variable::Span &span, const size_t bufferID, + const T &value); template - void PutSyncCommon(Variable &variable, - const typename Variable::BPInfo &blockInfo, + void PutSyncCommon(Variable &variable, const typename Variable::BPInfo &blockInfo, const bool resize = true); template @@ -118,8 +115,8 @@ class BP3Writer : public core::Engine */ void AggregateWriteData(const bool isFinal, const int transportIndex = -1); -#define declare_type(T, L) \ - T *DoBufferData_##L(const int bufferIdx, const size_t payloadPosition, \ +#define declare_type(T, L) \ + T *DoBufferData_##L(const int bufferIdx, const size_t payloadPosition, \ const size_t bufferID = 0) noexcept final; ADIOS2_FOREACH_PRIMITVE_STDTYPE_2ARGS(declare_type) diff --git a/source/adios2/engine/bp3/BP3Writer.tcc b/source/adios2/engine/bp3/BP3Writer.tcc index 967d6f541b..eb71d5b765 100644 --- a/source/adios2/engine/bp3/BP3Writer.tcc +++ b/source/adios2/engine/bp3/BP3Writer.tcc @@ -20,73 +20,61 @@ namespace engine { template -void BP3Writer::PutCommon(Variable &variable, - typename Variable::Span &span, +void BP3Writer::PutCommon(Variable &variable, typename Variable::Span &span, const size_t /*bufferID*/, const T &value) { - const typename Variable::BPInfo &blockInfo = - variable.SetBlockInfo(nullptr, CurrentStep()); + const typename Variable::BPInfo &blockInfo = variable.SetBlockInfo(nullptr, CurrentStep()); m_BP3Serializer.m_DeferredVariables.insert(variable.m_Name); - const size_t dataSize = - helper::PayloadSize(blockInfo.Data, blockInfo.Count) + - m_BP3Serializer.GetBPIndexSizeInData(variable.m_Name, blockInfo.Count); + const size_t dataSize = helper::PayloadSize(blockInfo.Data, blockInfo.Count) + + m_BP3Serializer.GetBPIndexSizeInData(variable.m_Name, blockInfo.Count); const format::BP3Base::ResizeResult resizeResult = - m_BP3Serializer.ResizeBuffer(dataSize, "in call to variable " + - variable.m_Name + " Put"); + m_BP3Serializer.ResizeBuffer(dataSize, "in call to variable " + variable.m_Name + " Put"); // if first timestep Write create a new pg index or in time aggregation if (!m_BP3Serializer.m_MetadataSet.DataPGIsOpen) { m_BP3Serializer.PutProcessGroupIndex( - m_IO.m_Name, - (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", + m_IO.m_Name, (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", m_FileDataManager.GetTransportsTypes()); } if (resizeResult == format::BP3Base::ResizeResult::Flush) { - helper::Throw( - "Engine", "BP3Writer", "PutCommon", - "returning a Span can't trigger " - "buffer reallocation in BP3 engine, remove " - "MaxBufferSize parameter, in call to Put"); + helper::Throw("Engine", "BP3Writer", "PutCommon", + "returning a Span can't trigger " + "buffer reallocation in BP3 engine, remove " + "MaxBufferSize parameter, in call to Put"); } // WRITE INDEX to data buffer and metadata structure (in memory)// const bool sourceRowMajor = (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor); - m_BP3Serializer.PutVariableMetadata(variable, blockInfo, sourceRowMajor, - &span); + m_BP3Serializer.PutVariableMetadata(variable, blockInfo, sourceRowMajor, &span); span.m_Value = value; - m_BP3Serializer.PutVariablePayload(variable, blockInfo, sourceRowMajor, - &span); + m_BP3Serializer.PutVariablePayload(variable, blockInfo, sourceRowMajor, &span); } template -void BP3Writer::PutSyncCommon(Variable &variable, - const typename Variable::BPInfo &blockInfo, +void BP3Writer::PutSyncCommon(Variable &variable, const typename Variable::BPInfo &blockInfo, const bool resize) { - format::BP3Base::ResizeResult resizeResult = - format::BP3Base::ResizeResult::Success; + format::BP3Base::ResizeResult resizeResult = format::BP3Base::ResizeResult::Success; if (resize) { const size_t dataSize = helper::PayloadSize(blockInfo.Data, blockInfo.Count) + - m_BP3Serializer.GetBPIndexSizeInData(variable.m_Name, - blockInfo.Count); + m_BP3Serializer.GetBPIndexSizeInData(variable.m_Name, blockInfo.Count); - resizeResult = m_BP3Serializer.ResizeBuffer( - dataSize, "in call to variable " + variable.m_Name + " Put"); + resizeResult = m_BP3Serializer.ResizeBuffer(dataSize, "in call to variable " + + variable.m_Name + " Put"); } // if first timestep Write create a new pg index or in time aggregation if (!m_BP3Serializer.m_MetadataSet.DataPGIsOpen) { m_BP3Serializer.PutProcessGroupIndex( - m_IO.m_Name, - (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", + m_IO.m_Name, (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", m_FileDataManager.GetTransportsTypes()); } @@ -97,8 +85,7 @@ void BP3Writer::PutSyncCommon(Variable &variable, // new group index for incoming variable m_BP3Serializer.PutProcessGroupIndex( - m_IO.m_Name, - (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", + m_IO.m_Name, (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", m_FileDataManager.GetTransportsTypes()); } @@ -117,22 +104,18 @@ void BP3Writer::PutDeferredCommon(Variable &variable, const T *data) return; } - const typename Variable::BPInfo blockInfo = - variable.SetBlockInfo(data, CurrentStep()); + const typename Variable::BPInfo blockInfo = variable.SetBlockInfo(data, CurrentStep()); m_BP3Serializer.m_DeferredVariables.insert(variable.m_Name); m_BP3Serializer.m_DeferredVariablesDataSize += static_cast( 1.05 * helper::PayloadSize(blockInfo.Data, blockInfo.Count) + - 4 * m_BP3Serializer.GetBPIndexSizeInData(variable.m_Name, - blockInfo.Count)); + 4 * m_BP3Serializer.GetBPIndexSizeInData(variable.m_Name, blockInfo.Count)); } template -T *BP3Writer::BufferDataCommon(const int /*bufferIdx*/, - const size_t payloadPosition, +T *BP3Writer::BufferDataCommon(const int /*bufferIdx*/, const size_t payloadPosition, const size_t /*bufferID*/) noexcept { - T *data = reinterpret_cast(m_BP3Serializer.m_Data.m_Buffer.data() + - payloadPosition); + T *data = reinterpret_cast(m_BP3Serializer.m_Data.m_Buffer.data() + payloadPosition); return data; } diff --git a/source/adios2/engine/bp4/BP4Reader.cpp b/source/adios2/engine/bp4/BP4Reader.cpp index f4e1f5c939..6f7cf42ed2 100644 --- a/source/adios2/engine/bp4/BP4Reader.cpp +++ b/source/adios2/engine/bp4/BP4Reader.cpp @@ -23,17 +23,15 @@ namespace core namespace engine { -BP4Reader::BP4Reader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) -: Engine("BP4Reader", io, name, mode, std::move(comm)), - m_BP4Deserializer(m_Comm), m_MDFileManager(io, m_Comm), - m_DataFileManager(io, m_Comm), m_MDIndexFileManager(io, m_Comm), +BP4Reader::BP4Reader(IO &io, const std::string &name, const Mode mode, helper::Comm comm) +: Engine("BP4Reader", io, name, mode, std::move(comm)), m_BP4Deserializer(m_Comm), + m_MDFileManager(io, m_Comm), m_DataFileManager(io, m_Comm), m_MDIndexFileManager(io, m_Comm), m_ActiveFlagFileManager(io, m_Comm) { PERFSTUBS_SCOPED_TIMER("BP4Reader::Open"); helper::GetParameter(m_IO.m_Parameters, "Verbose", m_Verbosity); - helper::Log("Engine", "BP4Reader", "Open", m_Name, 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "BP4Reader", "Open", m_Name, 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); Init(); m_IsOpen = true; } @@ -50,9 +48,8 @@ BP4Reader::~BP4Reader() StepStatus BP4Reader::BeginStep(StepMode mode, const float timeoutSeconds) { PERFSTUBS_SCOPED_TIMER("BP4Reader::BeginStep"); - helper::Log("Engine", "BP4Reader", "BeginStep", - std::to_string(CurrentStep()), 0, m_Comm.Rank(), 5, m_Verbosity, - helper::LogMode::INFO); + helper::Log("Engine", "BP4Reader", "BeginStep", std::to_string(CurrentStep()), 0, m_Comm.Rank(), + 5, m_Verbosity, helper::LogMode::INFO); if (mode != StepMode::Read) { @@ -72,11 +69,10 @@ StepStatus BP4Reader::BeginStep(StepMode mode, const float timeoutSeconds) if (!m_BP4Deserializer.m_DeferredVariables.empty()) { - helper::Throw( - "Engine", "BP4Reader", "BeginStep", - "existing variables subscribed with " - "GetDeferred, did you forget to call " - "PerformGets() or EndStep()?, in call to BeginStep"); + helper::Throw("Engine", "BP4Reader", "BeginStep", + "existing variables subscribed with " + "GetDeferred, did you forget to call " + "PerformGets() or EndStep()?, in call to BeginStep"); } // used to inquire for variables in streaming mode @@ -113,8 +109,7 @@ StepStatus BP4Reader::BeginStep(StepMode mode, const float timeoutSeconds) } m_IO.m_EngineStep = m_CurrentStep; - m_IO.ResetVariablesStepSelection(false, - "in call to BP4 Reader BeginStep"); + m_IO.ResetVariablesStepSelection(false, "in call to BP4 Reader BeginStep"); // caches attributes for each step // if a variable name is a prefix @@ -129,13 +124,12 @@ size_t BP4Reader::CurrentStep() const { return m_CurrentStep; } void BP4Reader::EndStep() { - helper::Log("Engine", "BP4Reader", "EndStep", std::to_string(CurrentStep()), - 0, m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "BP4Reader", "EndStep", std::to_string(CurrentStep()), 0, m_Comm.Rank(), + 5, m_Verbosity, helper::LogMode::INFO); if (!m_BetweenStepPairs) { - helper::Throw( - "Engine", "BP4Reader", "EndStep", - "EndStep() is called without a successful BeginStep()"); + helper::Throw("Engine", "BP4Reader", "EndStep", + "EndStep() is called without a successful BeginStep()"); } m_BetweenStepPairs = false; PERFSTUBS_SCOPED_TIMER("BP4Reader::EndStep"); @@ -145,8 +139,8 @@ void BP4Reader::EndStep() void BP4Reader::PerformGets() { PERFSTUBS_SCOPED_TIMER("BP4Reader::PerformGets"); - helper::Log("Engine", "BP4Reader", "PerformGets", "", 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "BP4Reader", "PerformGets", "", 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); if (m_BP4Deserializer.m_DeferredVariables.empty()) { return; @@ -159,17 +153,16 @@ void BP4Reader::PerformGets() if (type == DataType::Struct) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - Variable &variable = \ - FindVariable(name, "in call to PerformGets, EndStep or Close"); \ - for (auto &blockInfo : variable.m_BlocksInfo) \ - { \ - m_BP4Deserializer.SetVariableBlockInfo(variable, blockInfo); \ - } \ - ReadVariableBlocks(variable); \ - variable.m_BlocksInfo.clear(); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + Variable &variable = FindVariable(name, "in call to PerformGets, EndStep or Close"); \ + for (auto &blockInfo : variable.m_BlocksInfo) \ + { \ + m_BP4Deserializer.SetVariableBlockInfo(variable, blockInfo); \ + } \ + ReadVariableBlocks(variable); \ + variable.m_BlocksInfo.clear(); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -198,11 +191,9 @@ void BP4Reader::Init() /* Do a collective wait for the file(s) to appear within timeout. Make sure every process comes to the same conclusion */ - const Seconds timeoutSeconds( - m_BP4Deserializer.m_Parameters.OpenTimeoutSecs); + const Seconds timeoutSeconds(m_BP4Deserializer.m_Parameters.OpenTimeoutSecs); - Seconds pollSeconds( - m_BP4Deserializer.m_Parameters.BeginStepPollingFrequencySecs); + Seconds pollSeconds(m_BP4Deserializer.m_Parameters.BeginStepPollingFrequencySecs); if (pollSeconds > timeoutSeconds) { pollSeconds = timeoutSeconds; @@ -218,8 +209,7 @@ void BP4Reader::Init() } } -bool BP4Reader::SleepOrQuit(const TimePoint &timeoutInstant, - const Seconds &pollSeconds) +bool BP4Reader::SleepOrQuit(const TimePoint &timeoutInstant, const Seconds &pollSeconds) { auto now = Now(); if (now + pollSeconds >= timeoutInstant) @@ -238,8 +228,7 @@ bool BP4Reader::SleepOrQuit(const TimePoint &timeoutInstant, size_t BP4Reader::OpenWithTimeout(transportman::TransportMan &tm, const std::vector &fileNames, - const TimePoint &timeoutInstant, - const Seconds &pollSeconds, + const TimePoint &timeoutInstant, const Seconds &pollSeconds, std::string &lasterrmsg /*INOUT*/) { size_t flag = 1; // 0 = OK, opened file, 1 = timeout, 2 = error @@ -252,18 +241,15 @@ size_t BP4Reader::OpenWithTimeout(transportman::TransportMan &tm, for (size_t i = 0; i < m_IO.m_TransportsParameters.size(); ++i) { - m_IO.m_TransportsParameters[i].insert( - {"SingleProcess", "true"}); + m_IO.m_TransportsParameters[i].insert({"SingleProcess", "true"}); } - tm.OpenFiles(fileNames, adios2::Mode::Read, - m_IO.m_TransportsParameters, profile); + tm.OpenFiles(fileNames, adios2::Mode::Read, m_IO.m_TransportsParameters, profile); flag = 0; // found file break; } catch (std::ios_base::failure &e) { - lasterrmsg = - std::string("errno=" + std::to_string(errno) + ": " + e.what()); + lasterrmsg = std::string("errno=" + std::to_string(errno) + ": " + e.what()); if (errno == ENOENT) { flag = 1; // timeout @@ -287,15 +273,13 @@ void BP4Reader::OpenFiles(TimePoint &timeoutInstant, const Seconds &pollSeconds, if (m_BP4Deserializer.m_RankMPI == 0) { /* Open the metadata index table */ - const std::string metadataIndexFile( - m_BP4Deserializer.GetBPMetadataIndexFileName(m_Name)); - flag = OpenWithTimeout(m_MDIndexFileManager, {metadataIndexFile}, - timeoutInstant, pollSeconds, lasterrmsg); + const std::string metadataIndexFile(m_BP4Deserializer.GetBPMetadataIndexFileName(m_Name)); + flag = OpenWithTimeout(m_MDIndexFileManager, {metadataIndexFile}, timeoutInstant, + pollSeconds, lasterrmsg); if (flag == 0) { /* Open the metadata file */ - const std::string metadataFile( - m_BP4Deserializer.GetBPMetadataFileName(m_Name)); + const std::string metadataFile(m_BP4Deserializer.GetBPMetadataFileName(m_Name)); /* We found md.idx. If we don't find md.0 immediately we should * wait a little bit hoping for the file system to catch up. @@ -307,8 +291,8 @@ void BP4Reader::OpenFiles(TimePoint &timeoutInstant, const Seconds &pollSeconds, timeoutInstant += Seconds(5.0); } - flag = OpenWithTimeout(m_MDFileManager, {metadataFile}, - timeoutInstant, pollSeconds, lasterrmsg); + flag = OpenWithTimeout(m_MDFileManager, {metadataFile}, timeoutInstant, pollSeconds, + lasterrmsg); if (flag != 0) { /* Close the metadata index table */ @@ -322,15 +306,14 @@ void BP4Reader::OpenFiles(TimePoint &timeoutInstant, const Seconds &pollSeconds, { if (m_BP4Deserializer.m_RankMPI == 0 && !lasterrmsg.empty()) { - helper::Throw( - "Engine", "BP4Reader", "OpenFiles", - "File " + m_Name + " cannot be opened: " + lasterrmsg); + helper::Throw("Engine", "BP4Reader", "OpenFiles", + "File " + m_Name + + " cannot be opened: " + lasterrmsg); } else { - helper::Throw( - "Engine", "BP4Reader", "OpenFiles", - "File " + m_Name + " cannot be opened"); + helper::Throw("Engine", "BP4Reader", "OpenFiles", + "File " + m_Name + " cannot be opened"); } } else if (flag == 1) @@ -340,8 +323,7 @@ void BP4Reader::OpenFiles(TimePoint &timeoutInstant, const Seconds &pollSeconds, helper::Throw( "Engine", "BP4Reader", "OpenFiles", "File " + m_Name + " could not be found within the " + - std::to_string(timeoutSeconds.count()) + - "s timeout: " + lasterrmsg); + std::to_string(timeoutSeconds.count()) + "s timeout: " + lasterrmsg); } else { @@ -370,10 +352,10 @@ void BP4Reader::InitTransports() /* Count index records to minimum 1 and maximum of N records so that * expected metadata size is less then a predetermined constant */ -void MetadataCalculateMinFileSize( - const format::BP4Deserializer &m_BP4Deserializer, - const std::string &IdxFileName, char *buf, size_t idxsize, bool hasHeader, - const size_t mdStartPos, size_t &newIdxSize, size_t &expectedMinFileSize) +void MetadataCalculateMinFileSize(const format::BP4Deserializer &m_BP4Deserializer, + const std::string &IdxFileName, char *buf, size_t idxsize, + bool hasHeader, const size_t mdStartPos, size_t &newIdxSize, + size_t &expectedMinFileSize) { newIdxSize = 0; expectedMinFileSize = 0; @@ -392,14 +374,13 @@ void MetadataCalculateMinFileSize( if (idxsize % m_BP4Deserializer.m_IndexRecordSize != 0) { - helper::Throw( - "Engine", "BP4Reader", "MetadataCalculateMinFileSize", - "ADIOS Index file " + IdxFileName + - " is assumed to always contain n*" + - std::to_string(m_BP4Deserializer.m_IndexRecordSize) + - " byte-length records. " - "Right now the length of index buffer is " + - std::to_string(idxsize) + " bytes."); + helper::Throw("Engine", "BP4Reader", "MetadataCalculateMinFileSize", + "ADIOS Index file " + IdxFileName + + " is assumed to always contain n*" + + std::to_string(m_BP4Deserializer.m_IndexRecordSize) + + " byte-length records. " + "Right now the length of index buffer is " + + std::to_string(idxsize) + " bytes."); } const size_t nTotalRecords = idxsize / m_BP4Deserializer.m_IndexRecordSize; @@ -412,13 +393,11 @@ void MetadataCalculateMinFileSize( } size_t nRecords = 1; - expectedMinFileSize = *(uint64_t *)&( - buf[nRecords * m_BP4Deserializer.m_IndexRecordSize - 24]); + expectedMinFileSize = *(uint64_t *)&(buf[nRecords * m_BP4Deserializer.m_IndexRecordSize - 24]); while (nRecords < nTotalRecords) { const size_t n = nRecords + 1; - const uint64_t mdEndPos = - *(uint64_t *)&(buf[n * m_BP4Deserializer.m_IndexRecordSize - 24]); + const uint64_t mdEndPos = *(uint64_t *)&(buf[n * m_BP4Deserializer.m_IndexRecordSize - 24]); if (mdEndPos - mdStartPos > 16777216) { break; @@ -433,9 +412,8 @@ void MetadataCalculateMinFileSize( } } -uint64_t -MetadataExpectedMinFileSize(const format::BP4Deserializer &m_BP4Deserializer, - const std::string &IdxFileName, bool hasHeader) +uint64_t MetadataExpectedMinFileSize(const format::BP4Deserializer &m_BP4Deserializer, + const std::string &IdxFileName, bool hasHeader) { size_t idxsize = m_BP4Deserializer.m_MetadataIndex.m_Buffer.size(); if (idxsize % 64 != 0) @@ -447,20 +425,18 @@ MetadataExpectedMinFileSize(const format::BP4Deserializer &m_BP4Deserializer, "The file size now is " + std::to_string(idxsize) + " bytes."); } - if ((hasHeader && idxsize < m_BP4Deserializer.m_IndexHeaderSize + - m_BP4Deserializer.m_IndexRecordSize) || + if ((hasHeader && + idxsize < m_BP4Deserializer.m_IndexHeaderSize + m_BP4Deserializer.m_IndexRecordSize) || idxsize < m_BP4Deserializer.m_IndexRecordSize) { // no (new) step entry in the index, so no metadata is expected return 0; } - uint64_t lastpos = *(uint64_t *)&( - m_BP4Deserializer.m_MetadataIndex.m_Buffer[idxsize - 24]); + uint64_t lastpos = *(uint64_t *)&(m_BP4Deserializer.m_MetadataIndex.m_Buffer[idxsize - 24]); return lastpos; } -void BP4Reader::InitBuffer(const TimePoint &timeoutInstant, - const Seconds &pollSeconds, +void BP4Reader::InitBuffer(const TimePoint &timeoutInstant, const Seconds &pollSeconds, const Seconds &timeoutSeconds) { size_t newIdxSize = 0; @@ -468,16 +444,14 @@ void BP4Reader::InitBuffer(const TimePoint &timeoutInstant, if (m_BP4Deserializer.m_RankMPI == 0) { /* Read metadata index table into memory */ - const size_t metadataIndexFileSize = - m_MDIndexFileManager.GetFileSize(0); + const size_t metadataIndexFileSize = m_MDIndexFileManager.GetFileSize(0); if (metadataIndexFileSize > 0) { - m_BP4Deserializer.m_MetadataIndex.Resize( - metadataIndexFileSize, "allocating metadata index buffer, " - "in call to BPFileReader Open"); - m_MDIndexFileManager.ReadFile( - m_BP4Deserializer.m_MetadataIndex.m_Buffer.data(), - metadataIndexFileSize); + m_BP4Deserializer.m_MetadataIndex.Resize(metadataIndexFileSize, + "allocating metadata index buffer, " + "in call to BPFileReader Open"); + m_MDIndexFileManager.ReadFile(m_BP4Deserializer.m_MetadataIndex.m_Buffer.data(), + metadataIndexFileSize); /* Read metadata file into memory but first make sure * it has the content that the index table refers to */ @@ -496,12 +470,10 @@ void BP4Reader::InitBuffer(const TimePoint &timeoutInstant, if (fileSize >= expectedMinFileSize) { m_BP4Deserializer.m_Metadata.Resize( - expectedMinFileSize, - "allocating metadata buffer, in call to BP4Reader Open"); + expectedMinFileSize, "allocating metadata buffer, in call to BP4Reader Open"); - m_MDFileManager.ReadFile( - m_BP4Deserializer.m_Metadata.m_Buffer.data(), - expectedMinFileSize); + m_MDFileManager.ReadFile(m_BP4Deserializer.m_Metadata.m_Buffer.data(), + expectedMinFileSize); m_MDFileAlreadyReadSize = expectedMinFileSize; m_MDIndexFileAlreadyReadSize = metadataIndexFileSize; newIdxSize = metadataIndexFileSize; @@ -515,11 +487,9 @@ void BP4Reader::InitBuffer(const TimePoint &timeoutInstant, "has not contained enough data within " "the specified timeout of " + std::to_string(timeoutSeconds.count()) + - " seconds. index size = " + - std::to_string(metadataIndexFileSize) + + " seconds. index size = " + std::to_string(metadataIndexFileSize) + " metadata size = " + std::to_string(fileSize) + - " expected size = " + - std::to_string(expectedMinFileSize) + + " expected size = " + std::to_string(expectedMinFileSize) + ". One reason could be if the reader finds old data " "while " "the writer is creating the new files."); @@ -538,15 +508,14 @@ void BP4Reader::InitBuffer(const TimePoint &timeoutInstant, m_Comm.BroadcastVector(m_BP4Deserializer.m_MetadataIndex.m_Buffer); /* Parse metadata index table */ - m_BP4Deserializer.ParseMetadataIndex(m_BP4Deserializer.m_MetadataIndex, - 0, true, false); + m_BP4Deserializer.ParseMetadataIndex(m_BP4Deserializer.m_MetadataIndex, 0, true, false); // now we are sure the index header has been parsed, first step parsing // done m_IdxHeaderParsed = true; // fills IO with Variables and Attributes - m_MDFileProcessedSize = m_BP4Deserializer.ParseMetadata( - m_BP4Deserializer.m_Metadata, *this, true); + m_MDFileProcessedSize = + m_BP4Deserializer.ParseMetadata(m_BP4Deserializer.m_Metadata, *this, true); /* m_MDFileProcessedSize is the position in the buffer where processing * ends. The processing is controlled by the number of records in the @@ -561,8 +530,7 @@ void BP4Reader::InitBuffer(const TimePoint &timeoutInstant, } } -size_t BP4Reader::UpdateBuffer(const TimePoint &timeoutInstant, - const Seconds &pollSeconds) +size_t BP4Reader::UpdateBuffer(const TimePoint &timeoutInstant, const Seconds &pollSeconds) { std::vector sizes(3, 0); if (m_BP4Deserializer.m_RankMPI == 0) @@ -570,18 +538,16 @@ size_t BP4Reader::UpdateBuffer(const TimePoint &timeoutInstant, const size_t idxFileSize = m_MDIndexFileManager.GetFileSize(0); if (idxFileSize > m_MDIndexFileAlreadyReadSize) { - const size_t maxIdxSize = - idxFileSize - m_MDIndexFileAlreadyReadSize; + const size_t maxIdxSize = idxFileSize - m_MDIndexFileAlreadyReadSize; std::vector idxbuf(maxIdxSize); - m_MDIndexFileManager.ReadFile(idxbuf.data(), maxIdxSize, - m_MDIndexFileAlreadyReadSize); + m_MDIndexFileManager.ReadFile(idxbuf.data(), maxIdxSize, m_MDIndexFileAlreadyReadSize); size_t newIdxSize; size_t expectedMinFileSize; char *buf = idxbuf.data(); - MetadataCalculateMinFileSize( - m_BP4Deserializer, m_Name, buf, maxIdxSize, !m_IdxHeaderParsed, - m_MDFileAlreadyReadSize, newIdxSize, expectedMinFileSize); + MetadataCalculateMinFileSize(m_BP4Deserializer, m_Name, buf, maxIdxSize, + !m_IdxHeaderParsed, m_MDFileAlreadyReadSize, newIdxSize, + expectedMinFileSize); // const uint64_t expectedMinFileSize = MetadataExpectedMinFileSize( // m_BP4Deserializer, m_Name, !m_IdxHeaderParsed); @@ -618,18 +584,16 @@ size_t BP4Reader::UpdateBuffer(const TimePoint &timeoutInstant, * Those steps are read again here, starting in the beginning of * the buffer now. */ - const size_t newMDSize = - expectedMinFileSize - m_MDFileAlreadyReadSize; + const size_t newMDSize = expectedMinFileSize - m_MDFileAlreadyReadSize; if (m_BP4Deserializer.m_Metadata.m_Buffer.size() < newMDSize) { - m_BP4Deserializer.m_Metadata.Resize( - newMDSize, "allocating metadata buffer, in call to " - "BP4Reader Open"); + m_BP4Deserializer.m_Metadata.Resize(newMDSize, + "allocating metadata buffer, in call to " + "BP4Reader Open"); } m_BP4Deserializer.m_Metadata.Reset(true, false); - m_MDFileManager.ReadFile( - m_BP4Deserializer.m_Metadata.m_Buffer.data(), newMDSize, - m_MDFileAlreadyReadSize); + m_MDFileManager.ReadFile(m_BP4Deserializer.m_Metadata.m_Buffer.data(), newMDSize, + m_MDFileAlreadyReadSize); m_MDFileAbsolutePos = m_MDFileAlreadyReadSize; m_MDFileAlreadyReadSize = expectedMinFileSize; @@ -675,14 +639,13 @@ void BP4Reader::ProcessMetadataForNewSteps(const size_t newIdxSize) /* We need to skew the index table pointers with the size of the already-processed metadata because the memory buffer of new metadata starts from 0 */ - m_BP4Deserializer.ParseMetadataIndex(m_BP4Deserializer.m_MetadataIndex, - m_MDFileAbsolutePos, + m_BP4Deserializer.ParseMetadataIndex(m_BP4Deserializer.m_MetadataIndex, m_MDFileAbsolutePos, !m_IdxHeaderParsed, true); m_IdxHeaderParsed = true; // fills IO with Variables and Attributes - const size_t newProcessedMDSize = m_BP4Deserializer.ParseMetadata( - m_BP4Deserializer.m_Metadata, *this, false); + const size_t newProcessedMDSize = + m_BP4Deserializer.ParseMetadata(m_BP4Deserializer.m_Metadata, *this, false); // remember current end position in metadata and index table for next round m_MDFileProcessedSize = m_MDFileAbsolutePos + newProcessedMDSize; @@ -698,8 +661,7 @@ bool BP4Reader::CheckWriterActive() if (m_BP4Deserializer.m_RankMPI == 0) { std::vector header(m_BP4Deserializer.m_IndexHeaderSize, '\0'); - m_MDIndexFileManager.ReadFile( - header.data(), m_BP4Deserializer.m_IndexHeaderSize, 0, 0); + m_MDIndexFileManager.ReadFile(header.data(), m_BP4Deserializer.m_IndexHeaderSize, 0, 0); bool active = m_BP4Deserializer.ReadActiveFlag(header); flag = (active ? 1 : 0); } @@ -740,8 +702,7 @@ StepStatus BP4Reader::CheckForNewSteps(Seconds timeoutSeconds) } const TimePoint timeoutInstant = Now() + timeoutSeconds; - auto pollSeconds = - Seconds(m_BP4Deserializer.m_Parameters.BeginStepPollingFrequencySecs); + auto pollSeconds = Seconds(m_BP4Deserializer.m_Parameters.BeginStepPollingFrequencySecs); if (pollSeconds > timeoutSeconds) { pollSeconds = timeoutSeconds; @@ -797,20 +758,20 @@ StepStatus BP4Reader::CheckForNewSteps(Seconds timeoutSeconds) return retval; } -#define declare_type(T) \ - void BP4Reader::DoGetSync(Variable &variable, T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("BP4Reader::Get"); \ - helper::Log("Engine", "BP4Reader", "GetSync", variable.m_Name, 0, \ - m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); \ - GetSyncCommon(variable, data); \ - } \ - void BP4Reader::DoGetDeferred(Variable &variable, T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("BP4Reader::Get"); \ - helper::Log("Engine", "BP4Reader", "GetDeferred", variable.m_Name, 0, \ - m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); \ - GetDeferredCommon(variable, data); \ +#define declare_type(T) \ + void BP4Reader::DoGetSync(Variable &variable, T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("BP4Reader::Get"); \ + helper::Log("Engine", "BP4Reader", "GetSync", variable.m_Name, 0, m_Comm.Rank(), 5, \ + m_Verbosity, helper::LogMode::INFO); \ + GetSyncCommon(variable, data); \ + } \ + void BP4Reader::DoGetDeferred(Variable &variable, T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("BP4Reader::Get"); \ + helper::Log("Engine", "BP4Reader", "GetDeferred", variable.m_Name, 0, m_Comm.Rank(), 5, \ + m_Verbosity, helper::LogMode::INFO); \ + GetDeferredCommon(variable, data); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -818,8 +779,8 @@ ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) void BP4Reader::DoClose(const int transportIndex) { PERFSTUBS_SCOPED_TIMER("BP4Reader::Close"); - helper::Log("Engine", "BP4Reader", "Close", m_Name, 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "BP4Reader", "Close", m_Name, 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); PerformGets(); /* Remove all variables we created in the last step */ RemoveCreatedVars(); @@ -829,35 +790,32 @@ void BP4Reader::DoClose(const int transportIndex) m_MDIndexFileManager.CloseFiles(); } -#define declare_type(T) \ - std::map::BPInfo>> \ - BP4Reader::DoAllStepsBlocksInfo(const Variable &variable) const \ - { \ - PERFSTUBS_SCOPED_TIMER("BP4Reader::AllStepsBlocksInfo"); \ - return m_BP4Deserializer.AllStepsBlocksInfo(variable); \ - } \ - \ - std::vector::BPInfo>> \ - BP4Reader::DoAllRelativeStepsBlocksInfo(const Variable &variable) const \ - { \ - PERFSTUBS_SCOPED_TIMER("BP3Reader::AllRelativeStepsBlocksInfo"); \ - return m_BP4Deserializer.AllRelativeStepsBlocksInfo(variable); \ - } \ - \ - std::vector::BPInfo> BP4Reader::DoBlocksInfo( \ - const Variable &variable, const size_t step) const \ - { \ - PERFSTUBS_SCOPED_TIMER("BP4Reader::BlocksInfo"); \ - return m_BP4Deserializer.BlocksInfo(variable, step); \ +#define declare_type(T) \ + std::map::BPInfo>> BP4Reader::DoAllStepsBlocksInfo( \ + const Variable &variable) const \ + { \ + PERFSTUBS_SCOPED_TIMER("BP4Reader::AllStepsBlocksInfo"); \ + return m_BP4Deserializer.AllStepsBlocksInfo(variable); \ + } \ + \ + std::vector::BPInfo>> \ + BP4Reader::DoAllRelativeStepsBlocksInfo(const Variable &variable) const \ + { \ + PERFSTUBS_SCOPED_TIMER("BP3Reader::AllRelativeStepsBlocksInfo"); \ + return m_BP4Deserializer.AllRelativeStepsBlocksInfo(variable); \ + } \ + \ + std::vector::BPInfo> BP4Reader::DoBlocksInfo(const Variable &variable, \ + const size_t step) const \ + { \ + PERFSTUBS_SCOPED_TIMER("BP4Reader::BlocksInfo"); \ + return m_BP4Deserializer.BlocksInfo(variable, step); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type -size_t BP4Reader::DoSteps() const -{ - return m_BP4Deserializer.m_MetadataSet.StepsCount; -} +size_t BP4Reader::DoSteps() const { return m_BP4Deserializer.m_MetadataSet.StepsCount; } } // end namespace engine } // end namespace core diff --git a/source/adios2/engine/bp4/BP4Reader.h b/source/adios2/engine/bp4/BP4Reader.h index 0d89668168..b2c3a53752 100644 --- a/source/adios2/engine/bp4/BP4Reader.h +++ b/source/adios2/engine/bp4/BP4Reader.h @@ -36,13 +36,11 @@ class BP4Reader : public Engine * @param openMode only read * @param comm */ - BP4Reader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + BP4Reader(IO &io, const std::string &name, const Mode mode, helper::Comm comm); virtual ~BP4Reader(); - StepStatus BeginStep(StepMode mode = StepMode::Read, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode = StepMode::Read, const float timeoutSeconds = -1.0) final; size_t CurrentStep() const final; @@ -96,16 +94,14 @@ class BP4Reader : public Engine * Return true if slept * return false if sleep was not needed because it was overtime */ - bool SleepOrQuit(const TimePoint &timeoutInstant, - const Seconds &pollSeconds); + bool SleepOrQuit(const TimePoint &timeoutInstant, const Seconds &pollSeconds); /** Open one category of files within timeout. * @return: 0 = OK, 1 = timeout, 2 = error * lasterrmsg contains the error message in case of error */ size_t OpenWithTimeout(transportman::TransportMan &tm, const std::vector &fileNames, - const TimePoint &timeoutInstant, - const Seconds &pollSeconds, + const TimePoint &timeoutInstant, const Seconds &pollSeconds, std::string &lasterrmsg /*INOUT*/); /** Open files within timeout. @@ -120,8 +116,7 @@ class BP4Reader : public Engine * For streaming only. * @return size of new content from Index Table */ - size_t UpdateBuffer(const TimePoint &timeoutInstant, - const Seconds &pollSeconds); + size_t UpdateBuffer(const TimePoint &timeoutInstant, const Seconds &pollSeconds); /** Process the new metadata coming in (in UpdateBuffer) * @param newIdxSize: the size of the new content from Index Table @@ -149,8 +144,8 @@ class BP4Reader : public Engine */ StepStatus CheckForNewSteps(Seconds timeoutSeconds); -#define declare_type(T) \ - void DoGetSync(Variable &, T *) final; \ +#define declare_type(T) \ + void DoGetSync(Variable &, T *) final; \ void DoGetDeferred(Variable &, T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -166,15 +161,15 @@ class BP4Reader : public Engine template void ReadVariableBlocks(Variable &variable); -#define declare_type(T) \ - std::map::BPInfo>> \ - DoAllStepsBlocksInfo(const Variable &variable) const final; \ - \ - std::vector::BPInfo>> \ - DoAllRelativeStepsBlocksInfo(const Variable &) const final; \ - \ - std::vector::BPInfo> DoBlocksInfo( \ - const Variable &variable, const size_t step) const final; +#define declare_type(T) \ + std::map::BPInfo>> DoAllStepsBlocksInfo( \ + const Variable &variable) const final; \ + \ + std::vector::BPInfo>> DoAllRelativeStepsBlocksInfo( \ + const Variable &) const final; \ + \ + std::vector::BPInfo> DoBlocksInfo(const Variable &variable, \ + const size_t step) const final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/bp4/BP4Reader.tcc b/source/adios2/engine/bp4/BP4Reader.tcc index 99af2c8d28..51ac313752 100644 --- a/source/adios2/engine/bp4/BP4Reader.tcc +++ b/source/adios2/engine/bp4/BP4Reader.tcc @@ -23,8 +23,7 @@ namespace engine { template <> -inline void BP4Reader::GetSyncCommon(Variable &variable, - std::string *data) +inline void BP4Reader::GetSyncCommon(Variable &variable, std::string *data) { m_BP4Deserializer.GetValueFromMetadata(variable, data); } @@ -71,8 +70,7 @@ void BP4Reader::ReadVariableBlocks(Variable &variable) for (const auto &stepPair : blockInfo.StepBlockSubStreamsInfo) { - for (const helper::SubStreamBoxInfo &subStreamBoxInfo : - stepPair.second) + for (const helper::SubStreamBoxInfo &subStreamBoxInfo : stepPair.second) { if (subStreamBoxInfo.ZeroBlock) { @@ -80,32 +78,28 @@ void BP4Reader::ReadVariableBlocks(Variable &variable) } // check if subfile is already opened - if (m_DataFileManager.m_Transports.count( - subStreamBoxInfo.SubStreamID) == 0) + if (m_DataFileManager.m_Transports.count(subStreamBoxInfo.SubStreamID) == 0) { - const std::string subFileName = - m_BP4Deserializer.GetBPSubFileName( - m_Name, subStreamBoxInfo.SubStreamID, - m_BP4Deserializer.m_Minifooter.HasSubFiles, true); - - m_DataFileManager.OpenFileID( - subFileName, subStreamBoxInfo.SubStreamID, Mode::Read, - m_IO.m_TransportsParameters[0], profile); + const std::string subFileName = m_BP4Deserializer.GetBPSubFileName( + m_Name, subStreamBoxInfo.SubStreamID, + m_BP4Deserializer.m_Minifooter.HasSubFiles, true); + + m_DataFileManager.OpenFileID(subFileName, subStreamBoxInfo.SubStreamID, + Mode::Read, m_IO.m_TransportsParameters[0], + profile); } char *buffer = nullptr; size_t payloadSize = 0, payloadStart = 0; - m_BP4Deserializer.PreDataRead(variable, blockInfo, - subStreamBoxInfo, buffer, + m_BP4Deserializer.PreDataRead(variable, blockInfo, subStreamBoxInfo, buffer, payloadSize, payloadStart, 0); m_DataFileManager.ReadFile(buffer, payloadSize, payloadStart, subStreamBoxInfo.SubStreamID); - m_BP4Deserializer.PostDataRead( - variable, blockInfo, subStreamBoxInfo, - m_IO.m_ArrayOrder == ArrayOrdering::RowMajor, 0); + m_BP4Deserializer.PostDataRead(variable, blockInfo, subStreamBoxInfo, + m_IO.m_ArrayOrder == ArrayOrdering::RowMajor, 0); } // substreams loop // advance pointer to next step blockInfo.Data += helper::GetTotalSize(blockInfo.Count); diff --git a/source/adios2/engine/bp4/BP4Writer.cpp b/source/adios2/engine/bp4/BP4Writer.cpp index d33e885020..7419e4dd95 100644 --- a/source/adios2/engine/bp4/BP4Writer.cpp +++ b/source/adios2/engine/bp4/BP4Writer.cpp @@ -27,16 +27,15 @@ namespace core namespace engine { -BP4Writer::BP4Writer(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +BP4Writer::BP4Writer(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("BP4Writer", io, name, mode, std::move(comm)), m_BP4Serializer(m_Comm), m_FileDataManager(io, m_Comm), m_FileMetadataManager(io, m_Comm), m_FileMetadataIndexManager(io, m_Comm), m_FileDrainer() { PERFSTUBS_SCOPED_TIMER("BP4Writer::Open"); helper::GetParameter(m_IO.m_Parameters, "Verbose", m_Verbosity); - helper::Log("Engine", "BP4Writer", "Open", m_Name, 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "BP4Writer", "Open", m_Name, 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); m_IO.m_ReadStreaming = false; @@ -57,9 +56,8 @@ BP4Writer::~BP4Writer() StepStatus BP4Writer::BeginStep(StepMode mode, const float timeoutSeconds) { PERFSTUBS_SCOPED_TIMER("BP4Writer::BeginStep"); - helper::Log("Engine", "BP4Writer", "BeginStep", - std::to_string(CurrentStep()), 0, m_Comm.Rank(), 5, m_Verbosity, - helper::LogMode::INFO); + helper::Log("Engine", "BP4Writer", "BeginStep", std::to_string(CurrentStep()), 0, m_Comm.Rank(), + 5, m_Verbosity, helper::LogMode::INFO); m_BP4Serializer.m_DeferredVariables.clear(); m_BP4Serializer.m_DeferredVariablesDataSize = 0; @@ -67,16 +65,13 @@ StepStatus BP4Writer::BeginStep(StepMode mode, const float timeoutSeconds) return StepStatus::OK; } -size_t BP4Writer::CurrentStep() const -{ - return m_BP4Serializer.m_MetadataSet.CurrentStep; -} +size_t BP4Writer::CurrentStep() const { return m_BP4Serializer.m_MetadataSet.CurrentStep; } void BP4Writer::PerformPuts() { PERFSTUBS_SCOPED_TIMER("BP4Writer::PerformPuts"); - helper::Log("Engine", "BP4Writer", "PerformPuts", "", 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "BP4Writer", "PerformPuts", "", 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); if (m_BP4Serializer.m_DeferredVariables.empty()) { @@ -93,12 +88,12 @@ void BP4Writer::PerformPuts() { // not supported } -#define declare_template_instantiation(T) \ - else if (type == helper::GetDataType()) \ - { \ - Variable &variable = FindVariable( \ - variableName, "in call to PerformPuts, EndStep or Close"); \ - PerformPutCommon(variable); \ +#define declare_template_instantiation(T) \ + else if (type == helper::GetDataType()) \ + { \ + Variable &variable = \ + FindVariable(variableName, "in call to PerformPuts, EndStep or Close"); \ + PerformPutCommon(variable); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_template_instantiation) @@ -111,8 +106,8 @@ void BP4Writer::PerformPuts() void BP4Writer::EndStep() { PERFSTUBS_SCOPED_TIMER("BP4Writer::EndStep"); - helper::Log("Engine", "BP4Writer", "EndStep", std::to_string(CurrentStep()), - 0, m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "BP4Writer", "EndStep", std::to_string(CurrentStep()), 0, m_Comm.Rank(), + 5, m_Verbosity, helper::LogMode::INFO); if (m_BP4Serializer.m_DeferredVariables.size() > 0) { @@ -150,43 +145,41 @@ void BP4Writer::Init() if (m_BP4Serializer.m_Parameters.NumAggregators < static_cast(m_BP4Serializer.m_SizeMPI)) { - m_BP4Serializer.m_Aggregator.Init( - m_BP4Serializer.m_Parameters.NumAggregators, - m_BP4Serializer.m_Parameters.NumAggregators, m_Comm); + m_BP4Serializer.m_Aggregator.Init(m_BP4Serializer.m_Parameters.NumAggregators, + m_BP4Serializer.m_Parameters.NumAggregators, m_Comm); } InitTransports(); InitBPBuffer(); } -#define declare_type(T) \ - void BP4Writer::DoPut(Variable &variable, \ - typename Variable::Span &span, \ - const bool initialize, const T &value) \ - { \ - PERFSTUBS_SCOPED_TIMER("BP4Writer::Put"); \ - helper::Log("Engine", "BP4Writer", "Put", variable.m_Name, 0, \ - m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); \ - PutCommon(variable, span, 0, value); \ +#define declare_type(T) \ + void BP4Writer::DoPut(Variable &variable, typename Variable::Span &span, \ + const bool initialize, const T &value) \ + { \ + PERFSTUBS_SCOPED_TIMER("BP4Writer::Put"); \ + helper::Log("Engine", "BP4Writer", "Put", variable.m_Name, 0, m_Comm.Rank(), 5, \ + m_Verbosity, helper::LogMode::INFO); \ + PutCommon(variable, span, 0, value); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type -#define declare_type(T) \ - void BP4Writer::DoPutSync(Variable &variable, const T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("BP4Writer::Put"); \ - helper::Log("Engine", "BP4Writer", "PutSync", variable.m_Name, 0, \ - m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); \ - PutSyncCommon(variable, variable.SetBlockInfo(data, CurrentStep())); \ - variable.m_BlocksInfo.pop_back(); \ - } \ - void BP4Writer::DoPutDeferred(Variable &variable, const T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("BP4Writer::Put"); \ - helper::Log("Engine", "BP4Writer", "PutDeferred", variable.m_Name, 0, \ - m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); \ - PutDeferredCommon(variable, data); \ +#define declare_type(T) \ + void BP4Writer::DoPutSync(Variable &variable, const T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("BP4Writer::Put"); \ + helper::Log("Engine", "BP4Writer", "PutSync", variable.m_Name, 0, m_Comm.Rank(), 5, \ + m_Verbosity, helper::LogMode::INFO); \ + PutSyncCommon(variable, variable.SetBlockInfo(data, CurrentStep())); \ + variable.m_BlocksInfo.pop_back(); \ + } \ + void BP4Writer::DoPutDeferred(Variable &variable, const T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("BP4Writer::Put"); \ + helper::Log("Engine", "BP4Writer", "PutDeferred", variable.m_Name, 0, m_Comm.Rank(), 5, \ + m_Verbosity, helper::LogMode::INFO); \ + PutDeferredCommon(variable, data); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) @@ -215,14 +208,12 @@ void BP4Writer::InitTransports() m_BBName = m_Name; if (m_WriteToBB) { - m_BBName = m_BP4Serializer.m_Parameters.BurstBufferPath + - PathSeparator + m_Name; + m_BBName = m_BP4Serializer.m_Parameters.BurstBufferPath + PathSeparator + m_Name; } // Names passed to IO AddTransport option with key "Name" const std::vector transportsNames = - m_FileDataManager.GetFilesBaseNames(m_BBName, - m_IO.m_TransportsParameters); + m_FileDataManager.GetFilesBaseNames(m_BBName, m_IO.m_TransportsParameters); if (m_BP4Serializer.m_Aggregator.m_IsAggregator) { @@ -231,28 +222,23 @@ void BP4Writer::InitTransports() if (m_DrainBB) { const std::vector drainTransportNames = - m_FileDataManager.GetFilesBaseNames( - m_Name, m_IO.m_TransportsParameters); - m_DrainSubStreamNames = - m_BP4Serializer.GetBPSubStreamNames(drainTransportNames); + m_FileDataManager.GetFilesBaseNames(m_Name, m_IO.m_TransportsParameters); + m_DrainSubStreamNames = m_BP4Serializer.GetBPSubStreamNames(drainTransportNames); /* start up BB thread */ - m_FileDrainer.SetVerbose( - m_BP4Serializer.m_Parameters.BurstBufferVerbose, - m_BP4Serializer.m_RankMPI); + m_FileDrainer.SetVerbose(m_BP4Serializer.m_Parameters.BurstBufferVerbose, + m_BP4Serializer.m_RankMPI); m_FileDrainer.Start(); } } /* Create the directories either on target or burst buffer if used */ m_BP4Serializer.m_Profiler.Start("mkdir"); - m_FileDataManager.MkDirsBarrier( - m_SubStreamNames, m_IO.m_TransportsParameters, - m_BP4Serializer.m_Parameters.NodeLocal || m_WriteToBB); + m_FileDataManager.MkDirsBarrier(m_SubStreamNames, m_IO.m_TransportsParameters, + m_BP4Serializer.m_Parameters.NodeLocal || m_WriteToBB); if (m_DrainBB) { /* Create the directories on target anyway by main thread */ - m_FileDataManager.MkDirsBarrier(m_DrainSubStreamNames, - m_IO.m_TransportsParameters, + m_FileDataManager.MkDirsBarrier(m_DrainSubStreamNames, m_IO.m_TransportsParameters, m_BP4Serializer.m_Parameters.NodeLocal); } m_BP4Serializer.m_Profiler.Stop("mkdir"); @@ -271,8 +257,7 @@ void BP4Writer::InitTransports() m_IO.m_TransportsParameters[i].insert({"SingleProcess", "true"}); } - m_FileDataManager.OpenFiles(m_SubStreamNames, m_OpenMode, - m_IO.m_TransportsParameters, + m_FileDataManager.OpenFiles(m_SubStreamNames, m_OpenMode, m_IO.m_TransportsParameters, m_BP4Serializer.m_Profiler.m_IsActive); if (m_DrainBB) @@ -289,11 +274,9 @@ void BP4Writer::InitTransports() // if (m_BP4Serializer.m_Parameters.CollectiveMetadata) //{ const std::vector transportsNames = - m_FileMetadataManager.GetFilesBaseNames( - m_BBName, m_IO.m_TransportsParameters); + m_FileMetadataManager.GetFilesBaseNames(m_BBName, m_IO.m_TransportsParameters); - m_MetadataFileNames = - m_BP4Serializer.GetBPMetadataFileNames(transportsNames); + m_MetadataFileNames = m_BP4Serializer.GetBPMetadataFileNames(transportsNames); for (size_t i = 0; i < m_IO.m_TransportsParameters.size(); ++i) { @@ -303,23 +286,19 @@ void BP4Writer::InitTransports() m_IO.m_TransportsParameters, m_BP4Serializer.m_Profiler.m_IsActive); - m_MetadataIndexFileNames = - m_BP4Serializer.GetBPMetadataIndexFileNames(transportsNames); + m_MetadataIndexFileNames = m_BP4Serializer.GetBPMetadataIndexFileNames(transportsNames); - m_FileMetadataIndexManager.OpenFiles( - m_MetadataIndexFileNames, m_OpenMode, m_IO.m_TransportsParameters, - m_BP4Serializer.m_Profiler.m_IsActive); + m_FileMetadataIndexManager.OpenFiles(m_MetadataIndexFileNames, m_OpenMode, + m_IO.m_TransportsParameters, + m_BP4Serializer.m_Profiler.m_IsActive); if (m_DrainBB) { const std::vector drainTransportNames = - m_FileDataManager.GetFilesBaseNames( - m_Name, m_IO.m_TransportsParameters); - m_DrainMetadataFileNames = - m_BP4Serializer.GetBPMetadataFileNames(drainTransportNames); + m_FileDataManager.GetFilesBaseNames(m_Name, m_IO.m_TransportsParameters); + m_DrainMetadataFileNames = m_BP4Serializer.GetBPMetadataFileNames(drainTransportNames); m_DrainMetadataIndexFileNames = - m_BP4Serializer.GetBPMetadataIndexFileNames( - drainTransportNames); + m_BP4Serializer.GetBPMetadataIndexFileNames(drainTransportNames); for (const auto &name : m_DrainMetadataFileNames) { @@ -344,14 +323,12 @@ void BP4Writer::InitBPBuffer() if (m_BP4Serializer.m_RankMPI == 0) { - preMetadataIndexFileSize = - m_FileMetadataIndexManager.GetFileSize(0); + preMetadataIndexFileSize = m_FileMetadataIndexManager.GetFileSize(0); preMetadataIndex.m_Buffer.resize(preMetadataIndexFileSize); - preMetadataIndex.m_Buffer.assign(preMetadataIndex.m_Buffer.size(), - '\0'); + preMetadataIndex.m_Buffer.assign(preMetadataIndex.m_Buffer.size(), '\0'); preMetadataIndex.m_Position = 0; - m_FileMetadataIndexManager.ReadFile( - preMetadataIndex.m_Buffer.data(), preMetadataIndexFileSize); + m_FileMetadataIndexManager.ReadFile(preMetadataIndex.m_Buffer.data(), + preMetadataIndexFileSize); } m_Comm.BroadcastVector(preMetadataIndex.m_Buffer); preMetadataIndexFileSize = preMetadataIndex.m_Buffer.size(); @@ -374,16 +351,14 @@ void BP4Writer::InitBPBuffer() } const size_t pos_last_step = preMetadataIndexFileSize - 64; position = pos_last_step; - const uint64_t lastStep = helper::ReadValue( - preMetadataIndex.m_Buffer, position, IsLittleEndian); - m_BP4Serializer.m_MetadataSet.TimeStep += - static_cast(lastStep); + const uint64_t lastStep = + helper::ReadValue(preMetadataIndex.m_Buffer, position, IsLittleEndian); + m_BP4Serializer.m_MetadataSet.TimeStep += static_cast(lastStep); m_BP4Serializer.m_MetadataSet.CurrentStep += lastStep; if (m_BP4Serializer.m_Aggregator.m_IsAggregator) { - m_BP4Serializer.m_PreDataFileLength = - m_FileDataManager.GetFileSize(0); + m_BP4Serializer.m_PreDataFileLength = m_FileDataManager.GetFileSize(0); } if (m_BP4Serializer.m_Aggregator.m_IsActive) { @@ -396,8 +371,7 @@ void BP4Writer::InitBPBuffer() if (m_BP4Serializer.m_RankMPI == 0) { // Get the size of existing metadata file - m_BP4Serializer.m_PreMetadataFileLength = - m_FileMetadataManager.GetFileSize(0); + m_BP4Serializer.m_PreMetadataFileLength = m_FileMetadataManager.GetFileSize(0); } } } @@ -410,10 +384,8 @@ void BP4Writer::InitBPBuffer() */ if (m_BP4Serializer.m_RankMPI == 0) { - m_BP4Serializer.MakeHeader(m_BP4Serializer.m_Metadata, "Metadata", - false); - m_BP4Serializer.MakeHeader(m_BP4Serializer.m_MetadataIndex, - "Index Table", true); + m_BP4Serializer.MakeHeader(m_BP4Serializer.m_Metadata, "Metadata", false); + m_BP4Serializer.MakeHeader(m_BP4Serializer.m_MetadataIndex, "Index Table", true); } if (m_BP4Serializer.m_Aggregator.m_IsAggregator) { @@ -431,8 +403,7 @@ void BP4Writer::InitBPBuffer() } m_BP4Serializer.PutProcessGroupIndex( - m_IO.m_Name, - (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", + m_IO.m_Name, (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", m_FileDataManager.GetTransportsTypes()); } @@ -452,8 +423,8 @@ void BP4Writer::DestructorClose(bool Verbose) noexcept { if (Verbose) { - std::cerr << "BP4 Writer \"" << m_Name - << "\" Destroyed without a prior Close()." << std::endl; + std::cerr << "BP4 Writer \"" << m_Name << "\" Destroyed without a prior Close()." + << std::endl; std::cerr << "This may result in corrupt output." << std::endl; } // at least close metadata index file @@ -464,8 +435,8 @@ void BP4Writer::DestructorClose(bool Verbose) noexcept void BP4Writer::DoClose(const int transportIndex) { PERFSTUBS_SCOPED_TIMER("BP4Writer::Close"); - helper::Log("Engine", "BP4Writer", "Close", m_Name, 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "BP4Writer", "Close", m_Name, 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); if (m_BP4Serializer.m_DeferredVariables.size() > 0) { @@ -487,14 +458,12 @@ void BP4Writer::DoClose(const int transportIndex) } } - if (m_BP4Serializer.m_Parameters.CollectiveMetadata && - m_FileDataManager.AllTransportsClosed()) + if (m_BP4Serializer.m_Parameters.CollectiveMetadata && m_FileDataManager.AllTransportsClosed()) { WriteCollectiveMetadataFile(true); } - if (m_BP4Serializer.m_Profiler.m_IsActive && - m_FileDataManager.AllTransportsClosed()) + if (m_BP4Serializer.m_Profiler.m_IsActive && m_FileDataManager.AllTransportsClosed()) { WriteProfilingJSONFile(); } @@ -526,8 +495,7 @@ void BP4Writer::DoClose(const int transportIndex) m_FileDrainer.AddOperationDelete(name); } const std::vector transportsNames = - m_FileDataManager.GetFilesBaseNames( - m_BBName, m_IO.m_TransportsParameters); + m_FileDataManager.GetFilesBaseNames(m_BBName, m_IO.m_TransportsParameters); for (const auto &name : transportsNames) { m_FileDrainer.AddOperationDelete(name); @@ -563,19 +531,15 @@ void BP4Writer::WriteProfilingJSONFile() auto transportTypesMD = m_FileMetadataManager.GetTransportsTypes(); auto transportProfilersMD = m_FileMetadataManager.GetTransportsProfilers(); - transportTypes.insert(transportTypes.end(), transportTypesMD.begin(), - transportTypesMD.end()); + transportTypes.insert(transportTypes.end(), transportTypesMD.begin(), transportTypesMD.end()); - transportProfilers.insert(transportProfilers.end(), - transportProfilersMD.begin(), + transportProfilers.insert(transportProfilers.end(), transportProfilersMD.begin(), transportProfilersMD.end()); - const std::string lineJSON(m_BP4Serializer.GetRankProfilingJSON( - transportTypes, transportProfilers) + - ",\n"); + const std::string lineJSON( + m_BP4Serializer.GetRankProfilingJSON(transportTypes, transportProfilers) + ",\n"); - const std::vector profilingJSON( - m_BP4Serializer.AggregateProfilingJSON(lineJSON)); + const std::vector profilingJSON(m_BP4Serializer.AggregateProfilingJSON(lineJSON)); if (m_BP4Serializer.m_RankMPI == 0) { @@ -585,15 +549,14 @@ void BP4Writer::WriteProfilingJSONFile() auto bpTargetNames = m_BP4Serializer.GetBPBaseNames({m_Name}); if (fileTransportIdx > -1) { - profileFileName = - bpTargetNames[fileTransportIdx] + "/profiling.json"; + profileFileName = bpTargetNames[fileTransportIdx] + "/profiling.json"; } else { profileFileName = bpTargetNames[0] + "_profiling.json"; } - m_FileDrainer.AddOperationWrite( - profileFileName, profilingJSON.size(), profilingJSON.data()); + m_FileDrainer.AddOperationWrite(profileFileName, profilingJSON.size(), + profilingJSON.data()); } else { @@ -601,27 +564,27 @@ void BP4Writer::WriteProfilingJSONFile() auto bpBaseNames = m_BP4Serializer.GetBPBaseNames({m_BBName}); if (fileTransportIdx > -1) { - profileFileName = - bpBaseNames[fileTransportIdx] + "/profiling.json"; + profileFileName = bpBaseNames[fileTransportIdx] + "/profiling.json"; } else { profileFileName = bpBaseNames[0] + "_profiling.json"; } profilingJSONStream.Open(profileFileName, Mode::Write); - profilingJSONStream.Write(profilingJSON.data(), - profilingJSON.size()); + profilingJSONStream.Write(profilingJSON.data(), profilingJSON.size()); profilingJSONStream.Close(); } } } /*write the content of metadata index file*/ -void BP4Writer::PopulateMetadataIndexFileContent( - format::BufferSTL &b, const uint64_t currentStep, const uint64_t mpirank, - const uint64_t pgIndexStart, const uint64_t variablesIndexStart, - const uint64_t attributesIndexStart, const uint64_t currentStepEndPos, - const uint64_t currentTimeStamp) +void BP4Writer::PopulateMetadataIndexFileContent(format::BufferSTL &b, const uint64_t currentStep, + const uint64_t mpirank, + const uint64_t pgIndexStart, + const uint64_t variablesIndexStart, + const uint64_t attributesIndexStart, + const uint64_t currentStepEndPos, + const uint64_t currentTimeStamp) { PERFSTUBS_SCOPED_TIMER("BP4Writer::PopulateMetadataIndexFileContent"); auto &buffer = b.m_Buffer; @@ -639,17 +602,15 @@ void BP4Writer::PopulateMetadataIndexFileContent( void BP4Writer::UpdateActiveFlag(const bool active) { const char activeChar = (active ? '\1' : '\0'); - m_FileMetadataIndexManager.WriteFileAt( - &activeChar, 1, m_BP4Serializer.m_ActiveFlagPosition); + m_FileMetadataIndexManager.WriteFileAt(&activeChar, 1, m_BP4Serializer.m_ActiveFlagPosition); m_FileMetadataIndexManager.FlushFiles(); m_FileMetadataIndexManager.SeekToFileEnd(); if (m_DrainBB) { for (size_t i = 0; i < m_MetadataIndexFileNames.size(); ++i) { - m_FileDrainer.AddOperationWriteAt( - m_DrainMetadataIndexFileNames[i], - m_BP4Serializer.m_ActiveFlagPosition, 1, &activeChar); + m_FileDrainer.AddOperationWriteAt(m_DrainMetadataIndexFileNames[i], + m_BP4Serializer.m_ActiveFlagPosition, 1, &activeChar); m_FileDrainer.AddOperationSeekEnd(m_DrainMetadataIndexFileNames[i]); } } @@ -666,88 +627,73 @@ void BP4Writer::WriteCollectiveMetadataFile(const bool isFinal) // has already been written, don't need to write it again. return; } - m_BP4Serializer.AggregateCollectiveMetadata( - m_Comm, m_BP4Serializer.m_Metadata, true); + m_BP4Serializer.AggregateCollectiveMetadata(m_Comm, m_BP4Serializer.m_Metadata, true); if (m_BP4Serializer.m_RankMPI == 0) { - m_FileMetadataManager.WriteFiles( - m_BP4Serializer.m_Metadata.m_Buffer.data(), - m_BP4Serializer.m_Metadata.m_Position); + m_FileMetadataManager.WriteFiles(m_BP4Serializer.m_Metadata.m_Buffer.data(), + m_BP4Serializer.m_Metadata.m_Position); m_FileMetadataManager.FlushFiles(); if (m_DrainBB) { for (size_t i = 0; i < m_MetadataFileNames.size(); ++i) { - m_FileDrainer.AddOperationCopy( - m_MetadataFileNames[i], m_DrainMetadataFileNames[i], - m_BP4Serializer.m_Metadata.m_Position); + m_FileDrainer.AddOperationCopy(m_MetadataFileNames[i], m_DrainMetadataFileNames[i], + m_BP4Serializer.m_Metadata.m_Position); } } std::time_t currentTimeStamp = std::time(nullptr); std::vector timeSteps; - timeSteps.reserve( - m_BP4Serializer.m_MetadataIndexTable[m_BP4Serializer.m_RankMPI] - .size()); - for (auto const &pair : - m_BP4Serializer.m_MetadataIndexTable[m_BP4Serializer.m_RankMPI]) + timeSteps.reserve(m_BP4Serializer.m_MetadataIndexTable[m_BP4Serializer.m_RankMPI].size()); + for (auto const &pair : m_BP4Serializer.m_MetadataIndexTable[m_BP4Serializer.m_RankMPI]) { timeSteps.push_back(pair.first); } std::sort(timeSteps.begin(), timeSteps.end()); size_t rowsInMetadataIndexTable = timeSteps.size() + 1; - m_BP4Serializer.m_MetadataIndex.Resize(rowsInMetadataIndexTable * 64, - "BP4 Index Table"); + m_BP4Serializer.m_MetadataIndex.Resize(rowsInMetadataIndexTable * 64, "BP4 Index Table"); for (auto const &t : timeSteps) { const uint64_t pgIndexStartMetadataFile = - m_BP4Serializer - .m_MetadataIndexTable[m_BP4Serializer.m_RankMPI][t][0] + + m_BP4Serializer.m_MetadataIndexTable[m_BP4Serializer.m_RankMPI][t][0] + m_BP4Serializer.m_MetadataSet.MetadataFileLength + m_BP4Serializer.m_PreMetadataFileLength; const uint64_t varIndexStartMetadataFile = - m_BP4Serializer - .m_MetadataIndexTable[m_BP4Serializer.m_RankMPI][t][1] + + m_BP4Serializer.m_MetadataIndexTable[m_BP4Serializer.m_RankMPI][t][1] + m_BP4Serializer.m_MetadataSet.MetadataFileLength + m_BP4Serializer.m_PreMetadataFileLength; const uint64_t attrIndexStartMetadataFile = - m_BP4Serializer - .m_MetadataIndexTable[m_BP4Serializer.m_RankMPI][t][2] + + m_BP4Serializer.m_MetadataIndexTable[m_BP4Serializer.m_RankMPI][t][2] + m_BP4Serializer.m_MetadataSet.MetadataFileLength + m_BP4Serializer.m_PreMetadataFileLength; const uint64_t currentStepEndPosMetadataFile = - m_BP4Serializer - .m_MetadataIndexTable[m_BP4Serializer.m_RankMPI][t][3] + + m_BP4Serializer.m_MetadataIndexTable[m_BP4Serializer.m_RankMPI][t][3] + m_BP4Serializer.m_MetadataSet.MetadataFileLength + m_BP4Serializer.m_PreMetadataFileLength; - PopulateMetadataIndexFileContent( - m_BP4Serializer.m_MetadataIndex, t, m_BP4Serializer.m_RankMPI, - pgIndexStartMetadataFile, varIndexStartMetadataFile, - attrIndexStartMetadataFile, currentStepEndPosMetadataFile, - currentTimeStamp); + PopulateMetadataIndexFileContent(m_BP4Serializer.m_MetadataIndex, t, + m_BP4Serializer.m_RankMPI, pgIndexStartMetadataFile, + varIndexStartMetadataFile, attrIndexStartMetadataFile, + currentStepEndPosMetadataFile, currentTimeStamp); } - m_FileMetadataIndexManager.WriteFiles( - m_BP4Serializer.m_MetadataIndex.m_Buffer.data(), - m_BP4Serializer.m_MetadataIndex.m_Position); + m_FileMetadataIndexManager.WriteFiles(m_BP4Serializer.m_MetadataIndex.m_Buffer.data(), + m_BP4Serializer.m_MetadataIndex.m_Position); m_FileMetadataIndexManager.FlushFiles(); - m_BP4Serializer.m_MetadataSet.MetadataFileLength += - m_BP4Serializer.m_Metadata.m_Position; + m_BP4Serializer.m_MetadataSet.MetadataFileLength += m_BP4Serializer.m_Metadata.m_Position; if (m_DrainBB) { for (size_t i = 0; i < m_MetadataIndexFileNames.size(); ++i) { - m_FileDrainer.AddOperationWrite( - m_DrainMetadataIndexFileNames[i], - m_BP4Serializer.m_MetadataIndex.m_Position, - m_BP4Serializer.m_MetadataIndex.m_Buffer.data()); + m_FileDrainer.AddOperationWrite(m_DrainMetadataIndexFileNames[i], + m_BP4Serializer.m_MetadataIndex.m_Position, + m_BP4Serializer.m_MetadataIndex.m_Buffer.data()); } } } @@ -777,16 +723,14 @@ void BP4Writer::WriteData(const bool isFinal, const int transportIndex) dataSize = m_BP4Serializer.CloseStream(m_IO, false); } - m_FileDataManager.WriteFiles(m_BP4Serializer.m_Data.m_Buffer.data(), - dataSize, transportIndex); + m_FileDataManager.WriteFiles(m_BP4Serializer.m_Data.m_Buffer.data(), dataSize, transportIndex); m_FileDataManager.FlushFiles(transportIndex); if (m_DrainBB) { for (size_t i = 0; i < m_SubStreamNames.size(); ++i) { - m_FileDrainer.AddOperationCopy(m_SubStreamNames[i], - m_DrainSubStreamNames[i], dataSize); + m_FileDrainer.AddOperationCopy(m_SubStreamNames[i], m_DrainSubStreamNames[i], dataSize); } } } @@ -804,20 +748,17 @@ void BP4Writer::AggregateWriteData(const bool isFinal, const int transportIndex) aggregator::MPIChain::ExchangeRequests dataRequests = m_BP4Serializer.m_Aggregator.IExchange(m_BP4Serializer.m_Data, r); - aggregator::MPIChain::ExchangeAbsolutePositionRequests - absolutePositionRequests = - m_BP4Serializer.m_Aggregator.IExchangeAbsolutePosition( - m_BP4Serializer.m_Data, r); + aggregator::MPIChain::ExchangeAbsolutePositionRequests absolutePositionRequests = + m_BP4Serializer.m_Aggregator.IExchangeAbsolutePosition(m_BP4Serializer.m_Data, r); if (m_BP4Serializer.m_Aggregator.m_IsAggregator) { const format::Buffer &bufferSTL = - m_BP4Serializer.m_Aggregator.GetConsumerBuffer( - m_BP4Serializer.m_Data); + m_BP4Serializer.m_Aggregator.GetConsumerBuffer(m_BP4Serializer.m_Data); if (bufferSTL.m_Position > 0) { - m_FileDataManager.WriteFiles( - bufferSTL.Data(), bufferSTL.m_Position, transportIndex); + m_FileDataManager.WriteFiles(bufferSTL.Data(), bufferSTL.m_Position, + transportIndex); m_FileDataManager.FlushFiles(transportIndex); @@ -825,8 +766,7 @@ void BP4Writer::AggregateWriteData(const bool isFinal, const int transportIndex) } } - m_BP4Serializer.m_Aggregator.WaitAbsolutePosition( - absolutePositionRequests, r); + m_BP4Serializer.m_Aggregator.WaitAbsolutePosition(absolutePositionRequests, r); m_BP4Serializer.m_Aggregator.Wait(dataRequests, r); m_BP4Serializer.m_Aggregator.SwapBuffers(r); @@ -836,8 +776,7 @@ void BP4Writer::AggregateWriteData(const bool isFinal, const int transportIndex) { for (size_t i = 0; i < m_SubStreamNames.size(); ++i) { - m_FileDrainer.AddOperationCopy(m_SubStreamNames[i], - m_DrainSubStreamNames[i], + m_FileDrainer.AddOperationCopy(m_SubStreamNames[i], m_DrainSubStreamNames[i], totalBytesWritten); } } @@ -854,17 +793,15 @@ void BP4Writer::AggregateWriteData(const bool isFinal, const int transportIndex) // Reset Data buffer to its final size on this process at EndStep // The aggregation routine has resized it to some incoming process' data // size - m_BP4Serializer.m_Data.Resize(dataBufferSize, - "Reset buffersize to final size" + - std::to_string(dataBufferSize)); + m_BP4Serializer.m_Data.Resize(dataBufferSize, "Reset buffersize to final size" + + std::to_string(dataBufferSize)); } -#define declare_type(T, L) \ - T *BP4Writer::DoBufferData_##L(const int bufferIdx, \ - const size_t payloadPosition, \ - const size_t bufferID) noexcept \ - { \ - return BufferDataCommon(bufferIdx, payloadPosition, bufferID); \ +#define declare_type(T, L) \ + T *BP4Writer::DoBufferData_##L(const int bufferIdx, const size_t payloadPosition, \ + const size_t bufferID) noexcept \ + { \ + return BufferDataCommon(bufferIdx, payloadPosition, bufferID); \ } ADIOS2_FOREACH_PRIMITVE_STDTYPE_2ARGS(declare_type) @@ -880,8 +817,7 @@ void BP4Writer::NotifyEngineAttribute(std::string name, DataType type) noexcept m_BP4Serializer.m_SerializedAttributes.erase(name); } -void BP4Writer::NotifyEngineAttribute(std::string name, AttributeBase *attr, - void *Data) noexcept +void BP4Writer::NotifyEngineAttribute(std::string name, AttributeBase *attr, void *Data) noexcept { NotifyEngineAttribute(name, attr->m_Type); } diff --git a/source/adios2/engine/bp4/BP4Writer.h b/source/adios2/engine/bp4/BP4Writer.h index 056d8d4fa6..69e9570b52 100644 --- a/source/adios2/engine/bp4/BP4Writer.h +++ b/source/adios2/engine/bp4/BP4Writer.h @@ -35,13 +35,11 @@ class BP4Writer : public core::Engine * @param openMode w (supported), r, a from OpenMode in ADIOSTypes.h * @param comm multi-process communicator */ - BP4Writer(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + BP4Writer(IO &io, const std::string &name, const Mode mode, helper::Comm comm); ~BP4Writer(); - StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode, const float timeoutSeconds = -1.0) final; size_t CurrentStep() const final; void PerformPuts() final; void EndStep() final; @@ -102,27 +100,26 @@ class BP4Writer : public core::Engine /** Allocates memory and starts a PG group */ void InitBPBuffer(); -#define declare_type(T) \ - void DoPut(Variable &variable, typename Variable::Span &span, \ - const bool initialize, const T &value) final; +#define declare_type(T) \ + void DoPut(Variable &variable, typename Variable::Span &span, const bool initialize, \ + const T &value) final; ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type -#define declare_type(T) \ - void DoPutSync(Variable &, const T *) final; \ +#define declare_type(T) \ + void DoPutSync(Variable &, const T *) final; \ void DoPutDeferred(Variable &, const T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type template - void PutCommon(Variable &variable, typename Variable::Span &span, - const size_t bufferID, const T &value); + void PutCommon(Variable &variable, typename Variable::Span &span, const size_t bufferID, + const T &value); template - void PutSyncCommon(Variable &variable, - const typename Variable::BPInfo &blockInfo, + void PutSyncCommon(Variable &variable, const typename Variable::BPInfo &blockInfo, const bool resize = true); template @@ -136,11 +133,12 @@ class BP4Writer : public core::Engine * profilers*/ void WriteProfilingJSONFile(); - void PopulateMetadataIndexFileContent( - format::BufferSTL &buffer, const uint64_t currentStep, - const uint64_t mpirank, const uint64_t pgIndexStart, - const uint64_t variablesIndexStart, const uint64_t attributesIndexStart, - const uint64_t currentStepEndPos, const uint64_t currentTimeStamp); + void PopulateMetadataIndexFileContent(format::BufferSTL &buffer, const uint64_t currentStep, + const uint64_t mpirank, const uint64_t pgIndexStart, + const uint64_t variablesIndexStart, + const uint64_t attributesIndexStart, + const uint64_t currentStepEndPos, + const uint64_t currentTimeStamp); void UpdateActiveFlag(const bool active); @@ -158,8 +156,8 @@ class BP4Writer : public core::Engine */ void AggregateWriteData(const bool isFinal, const int transportIndex = -1); -#define declare_type(T, L) \ - T *DoBufferData_##L(const int bufferIdx, const size_t payloadPosition, \ +#define declare_type(T, L) \ + T *DoBufferData_##L(const int bufferIdx, const size_t payloadPosition, \ const size_t bufferID = 0) noexcept final; ADIOS2_FOREACH_PRIMITVE_STDTYPE_2ARGS(declare_type) @@ -173,8 +171,7 @@ class BP4Writer : public core::Engine void PerformPutCommon(Variable &variable); void NotifyEngineAttribute(std::string name, DataType type) noexcept; - virtual void NotifyEngineAttribute(std::string name, AttributeBase *attr, - void *Data) noexcept; + virtual void NotifyEngineAttribute(std::string name, AttributeBase *attr, void *Data) noexcept; }; } // end namespace engine diff --git a/source/adios2/engine/bp4/BP4Writer.tcc b/source/adios2/engine/bp4/BP4Writer.tcc index d3055f0293..cb780a3e8a 100644 --- a/source/adios2/engine/bp4/BP4Writer.tcc +++ b/source/adios2/engine/bp4/BP4Writer.tcc @@ -20,72 +20,60 @@ namespace engine { template -void BP4Writer::PutCommon(Variable &variable, - typename Variable::Span &span, +void BP4Writer::PutCommon(Variable &variable, typename Variable::Span &span, const size_t /*bufferID*/, const T &value) { - const typename Variable::BPInfo &blockInfo = - variable.SetBlockInfo(nullptr, CurrentStep()); + const typename Variable::BPInfo &blockInfo = variable.SetBlockInfo(nullptr, CurrentStep()); m_BP4Serializer.m_DeferredVariables.insert(variable.m_Name); - const size_t dataSize = - helper::PayloadSize(blockInfo.Data, blockInfo.Count) + - m_BP4Serializer.GetBPIndexSizeInData(variable.m_Name, blockInfo.Count); + const size_t dataSize = helper::PayloadSize(blockInfo.Data, blockInfo.Count) + + m_BP4Serializer.GetBPIndexSizeInData(variable.m_Name, blockInfo.Count); const format::BP4Serializer::ResizeResult resizeResult = - m_BP4Serializer.ResizeBuffer(dataSize, "in call to variable " + - variable.m_Name + " Put"); + m_BP4Serializer.ResizeBuffer(dataSize, "in call to variable " + variable.m_Name + " Put"); // if first timestep Write create a new pg index if (!m_BP4Serializer.m_MetadataSet.DataPGIsOpen) { m_BP4Serializer.PutProcessGroupIndex( - m_IO.m_Name, - (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", + m_IO.m_Name, (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", m_FileDataManager.GetTransportsTypes()); } if (resizeResult == format::BP4Serializer::ResizeResult::Flush) { - helper::Throw( - "Engine", "BP4Writer", "PutCommon", - "returning a Span can't trigger " - "buffer reallocation in BP4 engine, remove " - "MaxBufferSize parameter, in call to Put"); + helper::Throw("Engine", "BP4Writer", "PutCommon", + "returning a Span can't trigger " + "buffer reallocation in BP4 engine, remove " + "MaxBufferSize parameter, in call to Put"); } // WRITE INDEX to data buffer and metadata structure (in memory)// const bool sourceRowMajor = m_IO.m_ArrayOrder == ArrayOrdering::RowMajor; - m_BP4Serializer.PutVariableMetadata(variable, blockInfo, sourceRowMajor, - &span); + m_BP4Serializer.PutVariableMetadata(variable, blockInfo, sourceRowMajor, &span); span.m_Value = value; - m_BP4Serializer.PutVariablePayload(variable, blockInfo, sourceRowMajor, - &span); + m_BP4Serializer.PutVariablePayload(variable, blockInfo, sourceRowMajor, &span); } template -void BP4Writer::PutSyncCommon(Variable &variable, - const typename Variable::BPInfo &blockInfo, +void BP4Writer::PutSyncCommon(Variable &variable, const typename Variable::BPInfo &blockInfo, const bool resize) { - format::BP4Base::ResizeResult resizeResult = - format::BP4Base::ResizeResult::Success; + format::BP4Base::ResizeResult resizeResult = format::BP4Base::ResizeResult::Success; if (resize) { const size_t dataSize = helper::PayloadSize(blockInfo.Data, blockInfo.Count) + - m_BP4Serializer.GetBPIndexSizeInData(variable.m_Name, - blockInfo.Count); + m_BP4Serializer.GetBPIndexSizeInData(variable.m_Name, blockInfo.Count); - resizeResult = m_BP4Serializer.ResizeBuffer( - dataSize, "in call to variable " + variable.m_Name + " Put"); + resizeResult = m_BP4Serializer.ResizeBuffer(dataSize, "in call to variable " + + variable.m_Name + " Put"); } // if first timestep Write create a new pg index if (!m_BP4Serializer.m_MetadataSet.DataPGIsOpen) { m_BP4Serializer.PutProcessGroupIndex( - m_IO.m_Name, - (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", + m_IO.m_Name, (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", m_FileDataManager.GetTransportsTypes()); } @@ -96,8 +84,7 @@ void BP4Writer::PutSyncCommon(Variable &variable, // new group index for incoming variable m_BP4Serializer.PutProcessGroupIndex( - m_IO.m_Name, - (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", + m_IO.m_Name, (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", m_FileDataManager.GetTransportsTypes()); } @@ -116,22 +103,18 @@ void BP4Writer::PutDeferredCommon(Variable &variable, const T *data) return; } - const typename Variable::BPInfo blockInfo = - variable.SetBlockInfo(data, CurrentStep()); + const typename Variable::BPInfo blockInfo = variable.SetBlockInfo(data, CurrentStep()); m_BP4Serializer.m_DeferredVariables.insert(variable.m_Name); m_BP4Serializer.m_DeferredVariablesDataSize += static_cast( 1.05 * helper::PayloadSize(blockInfo.Data, blockInfo.Count) + - 4 * m_BP4Serializer.GetBPIndexSizeInData(variable.m_Name, - blockInfo.Count)); + 4 * m_BP4Serializer.GetBPIndexSizeInData(variable.m_Name, blockInfo.Count)); } template -T *BP4Writer::BufferDataCommon(const int /*bufferIdx*/, - const size_t payloadPosition, +T *BP4Writer::BufferDataCommon(const int /*bufferIdx*/, const size_t payloadPosition, const size_t /*bufferID*/) noexcept { - T *data = reinterpret_cast(m_BP4Serializer.m_Data.m_Buffer.data() + - payloadPosition); + T *data = reinterpret_cast(m_BP4Serializer.m_Data.m_Buffer.data() + payloadPosition); return data; } diff --git a/source/adios2/engine/bp5/BP5Engine.cpp b/source/adios2/engine/bp5/BP5Engine.cpp index faaa7eedb6..ce489b2fbf 100644 --- a/source/adios2/engine/bp5/BP5Engine.cpp +++ b/source/adios2/engine/bp5/BP5Engine.cpp @@ -23,8 +23,8 @@ namespace core namespace engine { -std::vector BP5Engine::GetBPMetadataFileNames( - const std::vector &names) const noexcept +std::vector +BP5Engine::GetBPMetadataFileNames(const std::vector &names) const noexcept { std::vector metadataFileNames; metadataFileNames.reserve(names.size()); @@ -35,8 +35,8 @@ std::vector BP5Engine::GetBPMetadataFileNames( return metadataFileNames; } -std::vector BP5Engine::GetBPMetaMetadataFileNames( - const std::vector &names) const noexcept +std::vector +BP5Engine::GetBPMetaMetadataFileNames(const std::vector &names) const noexcept { std::vector metaMetadataFileNames; metaMetadataFileNames.reserve(names.size()); @@ -47,19 +47,16 @@ std::vector BP5Engine::GetBPMetaMetadataFileNames( return metaMetadataFileNames; } -std::string -BP5Engine::GetBPMetadataFileName(const std::string &name) const noexcept +std::string BP5Engine::GetBPMetadataFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); const size_t index = 0; // global metadata file is generated by rank 0 /* the name of the metadata file is "md.0" */ - const std::string bpMetaDataRankName(bpName + PathSeparator + "md." + - std::to_string(index)); + const std::string bpMetaDataRankName(bpName + PathSeparator + "md." + std::to_string(index)); return bpMetaDataRankName; } -std::string -BP5Engine::GetBPMetaMetadataFileName(const std::string &name) const noexcept +std::string BP5Engine::GetBPMetaMetadataFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); const size_t index = 0; // global metadata file is generated by rank 0 @@ -69,8 +66,8 @@ BP5Engine::GetBPMetaMetadataFileName(const std::string &name) const noexcept return bpMetaMetaDataRankName; } -std::vector BP5Engine::GetBPMetadataIndexFileNames( - const std::vector &names) const noexcept +std::vector +BP5Engine::GetBPMetadataIndexFileNames(const std::vector &names) const noexcept { std::vector metadataIndexFileNames; metadataIndexFileNames.reserve(names.size()); @@ -81,18 +78,16 @@ std::vector BP5Engine::GetBPMetadataIndexFileNames( return metadataIndexFileNames; } -std::string -BP5Engine::GetBPMetadataIndexFileName(const std::string &name) const noexcept +std::string BP5Engine::GetBPMetadataIndexFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); /* the name of the metadata index file is "md.idx" */ - const std::string bpMetaDataIndexRankName(bpName + PathSeparator + - "md.idx"); + const std::string bpMetaDataIndexRankName(bpName + PathSeparator + "md.idx"); return bpMetaDataIndexRankName; } -std::vector BP5Engine::GetBPVersionFileNames( - const std::vector &names) const noexcept +std::vector +BP5Engine::GetBPVersionFileNames(const std::vector &names) const noexcept { std::vector versionFileNames; versionFileNames.reserve(names.size()); @@ -103,8 +98,7 @@ std::vector BP5Engine::GetBPVersionFileNames( return versionFileNames; } -std::string -BP5Engine::GetBPVersionFileName(const std::string &name) const noexcept +std::string BP5Engine::GetBPVersionFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); /* the name of the version file is ".bpversion" */ @@ -112,8 +106,7 @@ BP5Engine::GetBPVersionFileName(const std::string &name) const noexcept return bpVersionFileName; } -std::string BP5Engine::GetBPSubStreamName(const std::string &name, - const size_t id, +std::string BP5Engine::GetBPSubStreamName(const std::string &name, const size_t id, const bool hasSubFiles, const bool isReader) const noexcept { @@ -124,14 +117,12 @@ std::string BP5Engine::GetBPSubStreamName(const std::string &name, const std::string bpName = helper::RemoveTrailingSlash(name); /* the name of a data file starts with "data." */ - const std::string bpRankName(bpName + PathSeparator + "data." + - std::to_string(id)); + const std::string bpRankName(bpName + PathSeparator + "data." + std::to_string(id)); return bpRankName; } -std::vector -BP5Engine::GetBPSubStreamNames(const std::vector &names, - size_t subFileIndex) const noexcept +std::vector BP5Engine::GetBPSubStreamNames(const std::vector &names, + size_t subFileIndex) const noexcept { std::vector bpNames; bpNames.reserve(names.size()); @@ -152,16 +143,14 @@ void BP5Engine::ParseParams(IO &io, struct BP5Params &Params) params_lowercase[key] = value; } - auto lf_SetBoolParameter = [&](const std::string key, bool ¶meter, - bool def) { + auto lf_SetBoolParameter = [&](const std::string key, bool ¶meter, bool def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; if (itKey != params_lowercase.end()) { std::string value = itKey->second; - std::transform(value.begin(), value.end(), value.begin(), - ::tolower); + std::transform(value.begin(), value.end(), value.begin(), ::tolower); if (value == "yes" || value == "true" || value == "on") { parameter = true; @@ -172,41 +161,37 @@ void BP5Engine::ParseParams(IO &io, struct BP5Params &Params) } else { - helper::Throw( - "Engine", "BP5Engine", "ParseParams", - "Unknown BP5 Boolean parameter '" + value + "'"); + helper::Throw("Engine", "BP5Engine", "ParseParams", + "Unknown BP5 Boolean parameter '" + value + + "'"); } } }; - auto lf_SetFloatParameter = [&](const std::string key, float ¶meter, - float def) { + auto lf_SetFloatParameter = [&](const std::string key, float ¶meter, float def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; if (itKey != params_lowercase.end()) { std::string value = itKey->second; - parameter = - helper::StringTo(value, " in Parameter key=" + key); + parameter = helper::StringTo(value, " in Parameter key=" + key); } }; - auto lf_SetSizeBytesParameter = [&](const std::string key, - size_t ¶meter, size_t def) { + auto lf_SetSizeBytesParameter = [&](const std::string key, size_t ¶meter, size_t def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; if (itKey != params_lowercase.end()) { std::string value = itKey->second; - parameter = helper::StringToByteUnits( - value, "for Parameter key=" + key + "in call to Open"); + parameter = + helper::StringToByteUnits(value, "for Parameter key=" + key + "in call to Open"); } }; - auto lf_SetIntParameter = [&](const std::string key, int ¶meter, - int def) { + auto lf_SetIntParameter = [&](const std::string key, int ¶meter, int def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; @@ -218,8 +203,8 @@ void BP5Engine::ParseParams(IO &io, struct BP5Params &Params) return false; }; - auto lf_SetUIntParameter = [&](const std::string key, - unsigned int ¶meter, unsigned int def) { + auto lf_SetUIntParameter = [&](const std::string key, unsigned int ¶meter, + unsigned int def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; @@ -236,8 +221,8 @@ void BP5Engine::ParseParams(IO &io, struct BP5Params &Params) return false; }; - auto lf_SetStringParameter = [&](const std::string key, - std::string ¶meter, const char *def) { + auto lf_SetStringParameter = [&](const std::string key, std::string ¶meter, + const char *def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; @@ -249,16 +234,14 @@ void BP5Engine::ParseParams(IO &io, struct BP5Params &Params) return false; }; - auto lf_SetBufferVTypeParameter = [&](const std::string key, int ¶meter, - int def) { + auto lf_SetBufferVTypeParameter = [&](const std::string key, int ¶meter, int def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; if (itKey != params_lowercase.end()) { std::string value = itKey->second; - std::transform(value.begin(), value.end(), value.begin(), - ::tolower); + std::transform(value.begin(), value.end(), value.begin(), ::tolower); if (value == "malloc") { parameter = (int)BufferVType::MallocVType; @@ -269,24 +252,22 @@ void BP5Engine::ParseParams(IO &io, struct BP5Params &Params) } else { - helper::Throw( - "Engine", "BP5Engine", "ParseParams", - "Unknown BP5 BufferVType parameter \"" + value + - "\" (must be \"malloc\" or \"chunk\""); + helper::Throw("Engine", "BP5Engine", "ParseParams", + "Unknown BP5 BufferVType parameter \"" + + value + + "\" (must be \"malloc\" or \"chunk\""); } } }; - auto lf_SetAggregationTypeParameter = [&](const std::string key, - int ¶meter, int def) { + auto lf_SetAggregationTypeParameter = [&](const std::string key, int ¶meter, int def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; if (itKey != params_lowercase.end()) { std::string value = itKey->second; - std::transform(value.begin(), value.end(), value.begin(), - ::tolower); + std::transform(value.begin(), value.end(), value.begin(), ::tolower); if (value == "everyonewrites" || value == "auto") { parameter = (int)AggregationType::EveryoneWrites; @@ -310,18 +291,15 @@ void BP5Engine::ParseParams(IO &io, struct BP5Params &Params) } }; - auto lf_SetAsyncWriteParameter = [&](const std::string key, int ¶meter, - int def) { + auto lf_SetAsyncWriteParameter = [&](const std::string key, int ¶meter, int def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; if (itKey != params_lowercase.end()) { std::string value = itKey->second; - std::transform(value.begin(), value.end(), value.begin(), - ::tolower); - if (value == "guided" || value == "auto" || value == "on" || - value == "true") + std::transform(value.begin(), value.end(), value.begin(), ::tolower); + if (value == "guided" || value == "auto" || value == "on" || value == "true") { parameter = (int)AsyncWrite::Guided; } @@ -345,7 +323,7 @@ void BP5Engine::ParseParams(IO &io, struct BP5Params &Params) } }; -#define get_params(Param, Type, Typedecl, Default) \ +#define get_params(Param, Type, Typedecl, Default) \ lf_Set##Type##Parameter(#Param, Params.Param, Default); BP5_FOREACH_PARAMETER_TYPE_4ARGS(get_params); @@ -355,18 +333,17 @@ void BP5Engine::ParseParams(IO &io, struct BP5Params &Params) { std::cout << "---------------- " << io.m_EngineType << " engine parameters --------------\n"; -#define print_params(Param, Type, Typedecl, Default) \ - lf_Set##Type##Parameter(#Param, Params.Param, Default); \ - if (!m_RankMPI) \ - { \ - std::cout << " " << std::string(#Param) << " = " << Params.Param \ - << " default = " << Default << std::endl; \ +#define print_params(Param, Type, Typedecl, Default) \ + lf_Set##Type##Parameter(#Param, Params.Param, Default); \ + if (!m_RankMPI) \ + { \ + std::cout << " " << std::string(#Param) << " = " << Params.Param \ + << " default = " << Default << std::endl; \ } BP5_FOREACH_PARAMETER_TYPE_4ARGS(print_params); #undef print_params - std::cout << "-----------------------------------------------------" - << std::endl; + std::cout << "-----------------------------------------------------" << std::endl; } }; diff --git a/source/adios2/engine/bp5/BP5Engine.h b/source/adios2/engine/bp5/BP5Engine.h index 4ca223d240..fe5d6d5371 100644 --- a/source/adios2/engine/bp5/BP5Engine.h +++ b/source/adios2/engine/bp5/BP5Engine.h @@ -75,22 +75,19 @@ class BP5Engine WriterMapRecord = 'w', }; - std::vector - GetBPSubStreamNames(const std::vector &names, - size_t subFileIndex) const noexcept; + std::vector GetBPSubStreamNames(const std::vector &names, + size_t subFileIndex) const noexcept; - std::vector GetBPMetadataFileNames( - const std::vector &names) const noexcept; - std::vector GetBPMetaMetadataFileNames( - const std::vector &names) const noexcept; + std::vector + GetBPMetadataFileNames(const std::vector &names) const noexcept; + std::vector + GetBPMetaMetadataFileNames(const std::vector &names) const noexcept; std::string GetBPMetadataFileName(const std::string &name) const noexcept; - std::string - GetBPMetaMetadataFileName(const std::string &name) const noexcept; - std::vector GetBPMetadataIndexFileNames( - const std::vector &names) const noexcept; + std::string GetBPMetaMetadataFileName(const std::string &name) const noexcept; + std::vector + GetBPMetadataIndexFileNames(const std::vector &names) const noexcept; - std::string - GetBPMetadataIndexFileName(const std::string &name) const noexcept; + std::string GetBPMetadataIndexFileName(const std::string &name) const noexcept; std::string GetBPSubStreamName(const std::string &name, const size_t id, const bool hasSubFiles = true, @@ -125,39 +122,38 @@ class BP5Engine Guided }; -#define BP5_FOREACH_PARAMETER_TYPE_4ARGS(MACRO) \ - MACRO(OpenTimeoutSecs, Float, float, -1.0f) \ - MACRO(BeginStepPollingFrequencySecs, Float, float, 1.0f) \ - MACRO(StreamReader, Bool, bool, false) \ - MACRO(BurstBufferDrain, Bool, bool, true) \ - MACRO(BurstBufferPath, String, std::string, "") \ - MACRO(NodeLocal, Bool, bool, false) \ - MACRO(verbose, Int, int, 0) \ - MACRO(CollectiveMetadata, Bool, bool, true) \ - MACRO(NumAggregators, UInt, unsigned int, 0) \ - MACRO(AggregatorRatio, UInt, unsigned int, 0) \ - MACRO(NumSubFiles, UInt, unsigned int, 0) \ - MACRO(StripeSize, UInt, unsigned int, 4096) \ - MACRO(DirectIO, Bool, bool, false) \ - MACRO(DirectIOAlignOffset, UInt, unsigned int, 512) \ - MACRO(DirectIOAlignBuffer, UInt, unsigned int, 0) \ - MACRO(AggregationType, AggregationType, int, \ - (int)AggregationType::TwoLevelShm) \ - MACRO(AsyncOpen, Bool, bool, true) \ - MACRO(AsyncWrite, AsyncWrite, int, (int)AsyncWrite::Sync) \ - MACRO(GrowthFactor, Float, float, DefaultBufferGrowthFactor) \ - MACRO(InitialBufferSize, SizeBytes, size_t, DefaultInitialBufferSize) \ - MACRO(MinDeferredSize, SizeBytes, size_t, DefaultMinDeferredSize) \ - MACRO(BufferChunkSize, SizeBytes, size_t, DefaultBufferChunkSize) \ - MACRO(MaxShmSize, SizeBytes, size_t, DefaultMaxShmSize) \ - MACRO(BufferVType, BufferVType, int, (int)BufferVType::ChunkVType) \ - MACRO(AppendAfterSteps, Int, int, INT_MAX) \ - MACRO(SelectSteps, String, std::string, "") \ - MACRO(ReaderShortCircuitReads, Bool, bool, false) \ - MACRO(StatsLevel, UInt, unsigned int, 1) \ - MACRO(StatsBlockSize, SizeBytes, size_t, DefaultStatsBlockSize) \ - MACRO(Threads, UInt, unsigned int, 0) \ - MACRO(UseOneTimeAttributes, Bool, bool, true) \ +#define BP5_FOREACH_PARAMETER_TYPE_4ARGS(MACRO) \ + MACRO(OpenTimeoutSecs, Float, float, -1.0f) \ + MACRO(BeginStepPollingFrequencySecs, Float, float, 1.0f) \ + MACRO(StreamReader, Bool, bool, false) \ + MACRO(BurstBufferDrain, Bool, bool, true) \ + MACRO(BurstBufferPath, String, std::string, "") \ + MACRO(NodeLocal, Bool, bool, false) \ + MACRO(verbose, Int, int, 0) \ + MACRO(CollectiveMetadata, Bool, bool, true) \ + MACRO(NumAggregators, UInt, unsigned int, 0) \ + MACRO(AggregatorRatio, UInt, unsigned int, 0) \ + MACRO(NumSubFiles, UInt, unsigned int, 0) \ + MACRO(StripeSize, UInt, unsigned int, 4096) \ + MACRO(DirectIO, Bool, bool, false) \ + MACRO(DirectIOAlignOffset, UInt, unsigned int, 512) \ + MACRO(DirectIOAlignBuffer, UInt, unsigned int, 0) \ + MACRO(AggregationType, AggregationType, int, (int)AggregationType::TwoLevelShm) \ + MACRO(AsyncOpen, Bool, bool, true) \ + MACRO(AsyncWrite, AsyncWrite, int, (int)AsyncWrite::Sync) \ + MACRO(GrowthFactor, Float, float, DefaultBufferGrowthFactor) \ + MACRO(InitialBufferSize, SizeBytes, size_t, DefaultInitialBufferSize) \ + MACRO(MinDeferredSize, SizeBytes, size_t, DefaultMinDeferredSize) \ + MACRO(BufferChunkSize, SizeBytes, size_t, DefaultBufferChunkSize) \ + MACRO(MaxShmSize, SizeBytes, size_t, DefaultMaxShmSize) \ + MACRO(BufferVType, BufferVType, int, (int)BufferVType::ChunkVType) \ + MACRO(AppendAfterSteps, Int, int, INT_MAX) \ + MACRO(SelectSteps, String, std::string, "") \ + MACRO(ReaderShortCircuitReads, Bool, bool, false) \ + MACRO(StatsLevel, UInt, unsigned int, 1) \ + MACRO(StatsBlockSize, SizeBytes, size_t, DefaultStatsBlockSize) \ + MACRO(Threads, UInt, unsigned int, 0) \ + MACRO(UseOneTimeAttributes, Bool, bool, true) \ MACRO(MaxOpenFilesAtOnce, UInt, unsigned int, UINT_MAX) struct BP5Params diff --git a/source/adios2/engine/bp5/BP5Reader.cpp b/source/adios2/engine/bp5/BP5Reader.cpp index 63cd4301fd..67853ba270 100644 --- a/source/adios2/engine/bp5/BP5Reader.cpp +++ b/source/adios2/engine/bp5/BP5Reader.cpp @@ -28,12 +28,10 @@ namespace core namespace engine { -BP5Reader::BP5Reader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) -: Engine("BP5Reader", io, name, mode, std::move(comm)), - m_MDFileManager(io, m_Comm), m_DataFileManager(io, m_Comm), - m_MDIndexFileManager(io, m_Comm), m_FileMetaMetadataManager(io, m_Comm), - m_ActiveFlagFileManager(io, m_Comm) +BP5Reader::BP5Reader(IO &io, const std::string &name, const Mode mode, helper::Comm comm) +: Engine("BP5Reader", io, name, mode, std::move(comm)), m_MDFileManager(io, m_Comm), + m_DataFileManager(io, m_Comm), m_MDIndexFileManager(io, m_Comm), + m_FileMetaMetadataManager(io, m_Comm), m_ActiveFlagFileManager(io, m_Comm) { PERFSTUBS_SCOPED_TIMER("BP5Reader::Open"); Init(); @@ -62,19 +60,17 @@ void BP5Reader::InstallMetadataForTimestep(size_t Step) { size_t pgstart = m_MetadataIndexTable[Step][0]; size_t Position = pgstart + sizeof(uint64_t); // skip total data size - const uint64_t WriterCount = - m_WriterMap[m_WriterMapIndex[Step]].WriterCount; + const uint64_t WriterCount = m_WriterMap[m_WriterMapIndex[Step]].WriterCount; size_t MDPosition = Position + 2 * sizeof(uint64_t) * WriterCount; for (size_t WriterRank = 0; WriterRank < WriterCount; WriterRank++) { // variable metadata for timestep - size_t ThisMDSize = helper::ReadValue( - m_Metadata.m_Buffer, Position, m_Minifooter.IsLittleEndian); + size_t ThisMDSize = + helper::ReadValue(m_Metadata.m_Buffer, Position, m_Minifooter.IsLittleEndian); char *ThisMD = m_Metadata.m_Buffer.data() + MDPosition; if (m_OpenMode == Mode::ReadRandomAccess) { - m_BP5Deserializer->InstallMetaData(ThisMD, ThisMDSize, WriterRank, - Step); + m_BP5Deserializer->InstallMetaData(ThisMD, ThisMDSize, WriterRank, Step); } else { @@ -85,8 +81,8 @@ void BP5Reader::InstallMetadataForTimestep(size_t Step) for (size_t WriterRank = 0; WriterRank < WriterCount; WriterRank++) { // attribute metadata for timestep - size_t ThisADSize = helper::ReadValue( - m_Metadata.m_Buffer, Position, m_Minifooter.IsLittleEndian); + size_t ThisADSize = + helper::ReadValue(m_Metadata.m_Buffer, Position, m_Minifooter.IsLittleEndian); char *ThisAD = m_Metadata.m_Buffer.data() + MDPosition; if (ThisADSize > 0) m_BP5Deserializer->InstallAttributeData(ThisAD, ThisADSize); @@ -100,9 +96,8 @@ StepStatus BP5Reader::BeginStep(StepMode mode, const float timeoutSeconds) if (m_OpenMode == Mode::ReadRandomAccess) { - helper::Throw( - "Engine", "BP5Reader", "BeginStep", - "BeginStep called in random access mode"); + helper::Throw("Engine", "BP5Reader", "BeginStep", + "BeginStep called in random access mode"); } if (m_BetweenStepPairs) { @@ -162,17 +157,15 @@ StepStatus BP5Reader::BeginStep(StepMode mode, const float timeoutSeconds) // i++; // } - m_BP5Deserializer->SetupForStep( - m_CurrentStep, - m_WriterMap[m_WriterMapIndex[m_CurrentStep]].WriterCount); + m_BP5Deserializer->SetupForStep(m_CurrentStep, + m_WriterMap[m_WriterMapIndex[m_CurrentStep]].WriterCount); /* Remove all existing variables from previous steps It seems easier than trying to update them */ // m_IO.RemoveAllVariables(); InstallMetadataForTimestep(m_CurrentStep); - m_IO.ResetVariablesStepSelection(false, - "in call to BP5 Reader BeginStep"); + m_IO.ResetVariablesStepSelection(false, "in call to BP5 Reader BeginStep"); // caches attributes for each step // if a variable name is a prefix @@ -194,42 +187,39 @@ void BP5Reader::EndStep() } if (!m_BetweenStepPairs) { - helper::Throw( - "Engine", "BP5Reader", "EndStep", - "EndStep() is called without a successful BeginStep()"); + helper::Throw("Engine", "BP5Reader", "EndStep", + "EndStep() is called without a successful BeginStep()"); } m_BetweenStepPairs = false; PERFSTUBS_SCOPED_TIMER("BP5Reader::EndStep"); PerformGets(); } -std::pair -BP5Reader::ReadData(adios2::transportman::TransportMan &FileManager, - const size_t maxOpenFiles, const size_t WriterRank, - const size_t Timestep, const size_t StartOffset, - const size_t Length, char *Destination) +std::pair BP5Reader::ReadData(adios2::transportman::TransportMan &FileManager, + const size_t maxOpenFiles, const size_t WriterRank, + const size_t Timestep, const size_t StartOffset, + const size_t Length, char *Destination) { /* * Warning: this function is called by multiple threads */ size_t FlushCount = m_MetadataIndexTable[Timestep][2]; size_t DataPosPos = m_MetadataIndexTable[Timestep][3]; - size_t SubfileNum = static_cast( - m_WriterMap[m_WriterMapIndex[Timestep]].RankToSubfile[WriterRank]); + size_t SubfileNum = + static_cast(m_WriterMap[m_WriterMapIndex[Timestep]].RankToSubfile[WriterRank]); // check if subfile is already opened TP startSubfile = NOW(); if (FileManager.m_Transports.count(SubfileNum) == 0) { - const std::string subFileName = GetBPSubStreamName( - m_Name, SubfileNum, m_Minifooter.HasSubFiles, true); + const std::string subFileName = + GetBPSubStreamName(m_Name, SubfileNum, m_Minifooter.HasSubFiles, true); if (FileManager.m_Transports.size() >= maxOpenFiles) { auto m = FileManager.m_Transports.begin(); FileManager.CloseFiles((int)m->first); } - FileManager.OpenFileID(subFileName, SubfileNum, Mode::Read, - m_IO.m_TransportsParameters[0], + FileManager.OpenFileID(subFileName, SubfileNum, Mode::Read, m_IO.m_TransportsParameters[0], /*{{"transport", "File"}},*/ false); } TP endSubfile = NOW(); @@ -239,24 +229,20 @@ BP5Reader::ReadData(adios2::transportman::TransportMan &FileManager, as if all the flushes were in a single contiguous block in file. */ TP startRead = NOW(); - size_t InfoStartPos = - DataPosPos + (WriterRank * (2 * FlushCount + 1) * sizeof(uint64_t)); + size_t InfoStartPos = DataPosPos + (WriterRank * (2 * FlushCount + 1) * sizeof(uint64_t)); size_t SumDataSize = 0; // count in contiguous space for (size_t flush = 0; flush < FlushCount; flush++) { - size_t ThisDataPos = - helper::ReadValue(m_MetadataIndex.m_Buffer, InfoStartPos, - m_Minifooter.IsLittleEndian); - size_t ThisDataSize = - helper::ReadValue(m_MetadataIndex.m_Buffer, InfoStartPos, - m_Minifooter.IsLittleEndian); + size_t ThisDataPos = helper::ReadValue(m_MetadataIndex.m_Buffer, InfoStartPos, + m_Minifooter.IsLittleEndian); + size_t ThisDataSize = helper::ReadValue(m_MetadataIndex.m_Buffer, InfoStartPos, + m_Minifooter.IsLittleEndian); if (StartOffset < SumDataSize + ThisDataSize) { // discount offsets of skipped flushes size_t Offset = StartOffset - SumDataSize; - FileManager.ReadFile(Destination, Length, ThisDataPos + Offset, - SubfileNum); + FileManager.ReadFile(Destination, Length, ThisDataPos + Offset, SubfileNum); TP endRead = NOW(); double timeRead = DURATION(startRead, endRead); return std::make_pair(timeSubfile, timeRead); @@ -264,8 +250,8 @@ BP5Reader::ReadData(adios2::transportman::TransportMan &FileManager, SumDataSize += ThisDataSize; } - size_t ThisDataPos = helper::ReadValue( - m_MetadataIndex.m_Buffer, InfoStartPos, m_Minifooter.IsLittleEndian); + size_t ThisDataPos = helper::ReadValue(m_MetadataIndex.m_Buffer, InfoStartPos, + m_Minifooter.IsLittleEndian); size_t Offset = StartOffset - SumDataSize; FileManager.ReadFile(Destination, Length, ThisDataPos + Offset, SubfileNum); @@ -276,13 +262,10 @@ BP5Reader::ReadData(adios2::transportman::TransportMan &FileManager, void BP5Reader::PerformGets() { - auto lf_CompareReqSubfile = - [&](adios2::format::BP5Deserializer::ReadRequest &r1, - adios2::format::BP5Deserializer::ReadRequest &r2) -> bool { - return (m_WriterMap[m_WriterMapIndex[r1.Timestep]] - .RankToSubfile[r1.WriterRank] < - m_WriterMap[m_WriterMapIndex[r2.Timestep]] - .RankToSubfile[r2.WriterRank]); + auto lf_CompareReqSubfile = [&](adios2::format::BP5Deserializer::ReadRequest &r1, + adios2::format::BP5Deserializer::ReadRequest &r2) -> bool { + return (m_WriterMap[m_WriterMapIndex[r1.Timestep]].RankToSubfile[r1.WriterRank] < + m_WriterMap[m_WriterMapIndex[r2.Timestep]].RankToSubfile[r2.WriterRank]); }; // TP start = NOW(); @@ -290,8 +273,7 @@ void BP5Reader::PerformGets() size_t maxReadSize; // TP startGenerate = NOW(); - auto ReadRequests = - m_BP5Deserializer->GenerateReadRequests(false, &maxReadSize); + auto ReadRequests = m_BP5Deserializer->GenerateReadRequests(false, &maxReadSize); size_t nRequest = ReadRequests.size(); // TP endGenerate = NOW(); // double generateTime = DURATION(startGenerate, endGenerate); @@ -310,8 +292,8 @@ void BP5Reader::PerformGets() return reqidx; }; - auto lf_Reader = [&](const int FileManagerID, const size_t maxOpenFiles) - -> std::tuple { + auto lf_Reader = [&](const int FileManagerID, + const size_t maxOpenFiles) -> std::tuple { double copyTotal = 0.0; double readTotal = 0.0; double subfileTotal = 0.0; @@ -331,9 +313,8 @@ void BP5Reader::PerformGets() Req.DestinationAddr = buf.data(); } std::pair t = - ReadData(fileManagers[FileManagerID], maxOpenFiles, - Req.WriterRank, Req.Timestep, Req.StartOffset, - Req.ReadLength, Req.DestinationAddr); + ReadData(fileManagers[FileManagerID], maxOpenFiles, Req.WriterRank, Req.Timestep, + Req.StartOffset, Req.ReadLength, Req.DestinationAddr); TP startCopy = NOW(); m_BP5Deserializer->FinalizeGet(Req, false); @@ -351,25 +332,21 @@ void BP5Reader::PerformGets() if (m_Threads > 1 && nRequest > 1) { // TP startSort = NOW(); - std::sort(ReadRequests.begin(), ReadRequests.end(), - lf_CompareReqSubfile); + std::sort(ReadRequests.begin(), ReadRequests.end(), lf_CompareReqSubfile); // TP endSort = NOW(); // sortTime = DURATION(startSort, endSort); size_t nThreads = (m_Threads < nRequest ? m_Threads : nRequest); size_t maxOpenFiles = helper::SetWithinLimit( - (size_t)m_Parameters.MaxOpenFilesAtOnce / nThreads, (size_t)1, - MaxSizeT); + (size_t)m_Parameters.MaxOpenFilesAtOnce / nThreads, (size_t)1, MaxSizeT); - std::vector>> - futures(nThreads - 1); + std::vector>> futures(nThreads - 1); // launch Threads-1 threads to process subsets of requests, // then main thread process the last subset for (size_t tid = 0; tid < nThreads - 1; ++tid) { - futures[tid] = std::async(std::launch::async, lf_Reader, - (int)(tid + 1), maxOpenFiles); + futures[tid] = std::async(std::launch::async, lf_Reader, (int)(tid + 1), maxOpenFiles); } // main thread runs last subset of reads /*auto tMain = */ lf_Reader(0, maxOpenFiles); @@ -392,8 +369,8 @@ void BP5Reader::PerformGets() } else { - size_t maxOpenFiles = helper::SetWithinLimit( - (size_t)m_Parameters.MaxOpenFilesAtOnce, (size_t)1, MaxSizeT); + size_t maxOpenFiles = + helper::SetWithinLimit((size_t)m_Parameters.MaxOpenFilesAtOnce, (size_t)1, MaxSizeT); std::vector buf(maxReadSize); for (auto &Req : ReadRequests) { @@ -401,9 +378,8 @@ void BP5Reader::PerformGets() { Req.DestinationAddr = buf.data(); } - ReadData(m_DataFileManager, maxOpenFiles, Req.WriterRank, - Req.Timestep, Req.StartOffset, Req.ReadLength, - Req.DestinationAddr); + ReadData(m_DataFileManager, maxOpenFiles, Req.WriterRank, Req.Timestep, Req.StartOffset, + Req.ReadLength, Req.DestinationAddr); m_BP5Deserializer->FinalizeGet(Req, false); } } @@ -427,11 +403,10 @@ void BP5Reader::Init() { if ((m_OpenMode != Mode::Read) && (m_OpenMode != Mode::ReadRandomAccess)) { - helper::Throw( - "Engine", "BP5Reader", "Init", - "BPFileReader only supports OpenMode::Read or " - "OpenMode::ReadRandomAccess from" + - m_Name); + helper::Throw("Engine", "BP5Reader", "Init", + "BPFileReader only supports OpenMode::Read or " + "OpenMode::ReadRandomAccess from" + + m_Name); } // if IO was involved in reading before this flag may be true now @@ -477,14 +452,12 @@ void BP5Reader::InitParameters() m_Threads = m_Parameters.Threads; if (m_Threads == 0) { - helper::Comm m_NodeComm = - m_Comm.GroupByShm("creating per-node comm at BP5 Open(read)"); + helper::Comm m_NodeComm = m_Comm.GroupByShm("creating per-node comm at BP5 Open(read)"); unsigned int NodeSize = static_cast(m_NodeComm.Size()); unsigned int NodeThreadSize = helper::NumHardwareThreadsPerNode(); if (NodeThreadSize > 0) { - m_Threads = - helper::SetWithinLimit(NodeThreadSize / NodeSize, 1U, 16U); + m_Threads = helper::SetWithinLimit(NodeThreadSize / NodeSize, 1U, 16U); } else { @@ -497,8 +470,8 @@ void BP5Reader::InitParameters() fileManagers.push_back(m_DataFileManager); for (unsigned int i = 0; i < m_Threads - 1; ++i) { - fileManagers.push_back(transportman::TransportMan( - transportman::TransportMan(m_IO, singleComm))); + fileManagers.push_back( + transportman::TransportMan(transportman::TransportMan(m_IO, singleComm))); } size_t limit = helper::RaiseLimitNoFile(); @@ -508,8 +481,7 @@ void BP5Reader::InitParameters() } } -bool BP5Reader::SleepOrQuit(const TimePoint &timeoutInstant, - const Seconds &pollSeconds) +bool BP5Reader::SleepOrQuit(const TimePoint &timeoutInstant, const Seconds &pollSeconds) { auto now = Now(); if (now >= timeoutInstant) @@ -528,8 +500,7 @@ bool BP5Reader::SleepOrQuit(const TimePoint &timeoutInstant, size_t BP5Reader::OpenWithTimeout(transportman::TransportMan &tm, const std::vector &fileNames, - const TimePoint &timeoutInstant, - const Seconds &pollSeconds, + const TimePoint &timeoutInstant, const Seconds &pollSeconds, std::string &lasterrmsg /*INOUT*/) { size_t flag = 1; // 0 = OK, opened file, 1 = timeout, 2 = error @@ -538,17 +509,14 @@ size_t BP5Reader::OpenWithTimeout(transportman::TransportMan &tm, try { errno = 0; - const bool profile = - false; // m_BP4Deserializer.m_Profiler.m_IsActive; - tm.OpenFiles(fileNames, adios2::Mode::Read, - m_IO.m_TransportsParameters, profile); + const bool profile = false; // m_BP4Deserializer.m_Profiler.m_IsActive; + tm.OpenFiles(fileNames, adios2::Mode::Read, m_IO.m_TransportsParameters, profile); flag = 0; // found file break; } catch (std::ios_base::failure &e) { - lasterrmsg = - std::string("errno=" + std::to_string(errno) + ": " + e.what()); + lasterrmsg = std::string("errno=" + std::to_string(errno) + ": " + e.what()); if (errno == ENOENT) { flag = 1; // timeout @@ -574,8 +542,8 @@ void BP5Reader::OpenFiles(TimePoint &timeoutInstant, const Seconds &pollSeconds, /* Open the metadata index table */ const std::string metadataIndexFile(GetBPMetadataIndexFileName(m_Name)); - flag = OpenWithTimeout(m_MDIndexFileManager, {metadataIndexFile}, - timeoutInstant, pollSeconds, lasterrmsg); + flag = OpenWithTimeout(m_MDIndexFileManager, {metadataIndexFile}, timeoutInstant, + pollSeconds, lasterrmsg); if (flag == 0) { /* Open the metadata file */ @@ -591,8 +559,8 @@ void BP5Reader::OpenFiles(TimePoint &timeoutInstant, const Seconds &pollSeconds, timeoutInstant += Seconds(5.0); } - flag = OpenWithTimeout(m_MDFileManager, {metadataFile}, - timeoutInstant, pollSeconds, lasterrmsg); + flag = OpenWithTimeout(m_MDFileManager, {metadataFile}, timeoutInstant, pollSeconds, + lasterrmsg); if (flag != 0) { /* Close the metadata index table */ @@ -601,8 +569,7 @@ void BP5Reader::OpenFiles(TimePoint &timeoutInstant, const Seconds &pollSeconds, else { /* Open the metametadata file */ - const std::string metametadataFile( - GetBPMetaMetadataFileName(m_Name)); + const std::string metametadataFile(GetBPMetaMetadataFileName(m_Name)); /* We found md.idx. If we don't find md.0 immediately we should * wait a little bit hoping for the file system to catch up. @@ -614,9 +581,8 @@ void BP5Reader::OpenFiles(TimePoint &timeoutInstant, const Seconds &pollSeconds, timeoutInstant += Seconds(5.0); } - flag = OpenWithTimeout(m_FileMetaMetadataManager, - {metametadataFile}, timeoutInstant, - pollSeconds, lasterrmsg); + flag = OpenWithTimeout(m_FileMetaMetadataManager, {metametadataFile}, + timeoutInstant, pollSeconds, lasterrmsg); if (flag != 0) { /* Close the metametadata index table */ @@ -632,15 +598,14 @@ void BP5Reader::OpenFiles(TimePoint &timeoutInstant, const Seconds &pollSeconds, { if (m_Comm.Rank() == 0 && !lasterrmsg.empty()) { - helper::Throw( - "Engine", "BP5Reader", "OpenFiles", - "File " + m_Name + " cannot be opened: " + lasterrmsg); + helper::Throw("Engine", "BP5Reader", "OpenFiles", + "File " + m_Name + + " cannot be opened: " + lasterrmsg); } else { - helper::Throw( - "Engine", "BP5Reader", "OpenFiles", - "File " + m_Name + " cannot be opened"); + helper::Throw("Engine", "BP5Reader", "OpenFiles", + "File " + m_Name + " cannot be opened"); } } else if (flag == 1) @@ -650,8 +615,7 @@ void BP5Reader::OpenFiles(TimePoint &timeoutInstant, const Seconds &pollSeconds, helper::Throw( "Engine", "BP5Reader", "OpenFiles", "File " + m_Name + " could not be found within the " + - std::to_string(timeoutSeconds.count()) + - "s timeout: " + lasterrmsg); + std::to_string(timeoutSeconds.count()) + "s timeout: " + lasterrmsg); } else { @@ -667,20 +631,17 @@ void BP5Reader::OpenFiles(TimePoint &timeoutInstant, const Seconds &pollSeconds, */ } -MinVarInfo *BP5Reader::MinBlocksInfo(const VariableBase &Var, - const size_t Step) const +MinVarInfo *BP5Reader::MinBlocksInfo(const VariableBase &Var, const size_t Step) const { return m_BP5Deserializer->MinBlocksInfo(Var, Step); } -bool BP5Reader::VarShape(const VariableBase &Var, const size_t Step, - Dims &Shape) const +bool BP5Reader::VarShape(const VariableBase &Var, const size_t Step, Dims &Shape) const { return m_BP5Deserializer->VarShape(Var, Step, Shape); } -bool BP5Reader::VariableMinMax(const VariableBase &Var, const size_t Step, - MinMaxStruct &MinMax) +bool BP5Reader::VariableMinMax(const VariableBase &Var, const size_t Step, MinMaxStruct &MinMax) { return m_BP5Deserializer->VariableMinMax(Var, Step, MinMax); } @@ -702,10 +663,10 @@ void BP5Reader::InstallMetaMetaData(format::BufferSTL buffer) { format::BP5Base::MetaMetaInfoBlock MMI; - MMI.MetaMetaIDLen = helper::ReadValue( - buffer.m_Buffer, Position, m_Minifooter.IsLittleEndian); - MMI.MetaMetaInfoLen = helper::ReadValue( - buffer.m_Buffer, Position, m_Minifooter.IsLittleEndian); + MMI.MetaMetaIDLen = + helper::ReadValue(buffer.m_Buffer, Position, m_Minifooter.IsLittleEndian); + MMI.MetaMetaInfoLen = + helper::ReadValue(buffer.m_Buffer, Position, m_Minifooter.IsLittleEndian); MMI.MetaMetaID = buffer.Data() + Position; MMI.MetaMetaInfo = buffer.Data() + Position + MMI.MetaMetaIDLen; m_BP5Deserializer->InstallMetaMetaData(MMI); @@ -714,8 +675,7 @@ void BP5Reader::InstallMetaMetaData(format::BufferSTL buffer) m_MetaMetaDataFileAlreadyProcessedSize = Position; } -void BP5Reader::UpdateBuffer(const TimePoint &timeoutInstant, - const Seconds &pollSeconds, +void BP5Reader::UpdateBuffer(const TimePoint &timeoutInstant, const Seconds &pollSeconds, const Seconds &timeoutSeconds) { size_t newIdxSize = 0; @@ -723,14 +683,12 @@ void BP5Reader::UpdateBuffer(const TimePoint &timeoutInstant, if (m_Comm.Rank() == 0) { /* Read metadata index table into memory */ - const size_t metadataIndexFileSize = - m_MDIndexFileManager.GetFileSize(0); + const size_t metadataIndexFileSize = m_MDIndexFileManager.GetFileSize(0); newIdxSize = metadataIndexFileSize - m_MDIndexFileAlreadyReadSize; if (metadataIndexFileSize > m_MDIndexFileAlreadyReadSize) { m_MetadataIndex.m_Buffer.resize(newIdxSize); - m_MDIndexFileManager.ReadFile(m_MetadataIndex.m_Buffer.data(), - newIdxSize, + m_MDIndexFileManager.ReadFile(m_MetadataIndex.m_Buffer.data(), newIdxSize, m_MDIndexFileAlreadyReadSize); } else @@ -764,9 +722,8 @@ void BP5Reader::UpdateBuffer(const TimePoint &timeoutInstant, // create the serializer object if (!m_BP5Deserializer) { - m_BP5Deserializer = new format::BP5Deserializer( - m_WriterIsRowMajor, m_ReaderIsRowMajor, - (m_OpenMode == Mode::ReadRandomAccess)); + m_BP5Deserializer = new format::BP5Deserializer(m_WriterIsRowMajor, m_ReaderIsRowMajor, + (m_OpenMode == Mode::ReadRandomAccess)); m_BP5Deserializer->m_Engine = this; } } @@ -800,14 +757,13 @@ void BP5Reader::UpdateBuffer(const TimePoint &timeoutInstant, if (actualFileSize >= expectedMinFileSize) { - m_Metadata.Resize(fileFilteredSize, - "allocating metadata buffer, " - "in call to BP5Reader Open"); + m_Metadata.Resize(fileFilteredSize, "allocating metadata buffer, " + "in call to BP5Reader Open"); size_t mempos = 0; for (auto p : m_FilteredMetadataInfo) { - m_MDFileManager.ReadFile( - m_Metadata.m_Buffer.data() + mempos, p.second, p.first); + m_MDFileManager.ReadFile(m_Metadata.m_Buffer.data() + mempos, p.second, + p.first); mempos += p.second; } m_MDFileAlreadyReadSize = expectedMinFileSize; @@ -823,8 +779,7 @@ void BP5Reader::UpdateBuffer(const TimePoint &timeoutInstant, std::to_string(timeoutSeconds.count()) + " seconds. index size = " + std::to_string(newIdxSize) + " metadata size = " + std::to_string(actualFileSize) + - " expected size = " + - std::to_string(expectedMinFileSize) + + " expected size = " + std::to_string(expectedMinFileSize) + ". One reason could be if the reader finds old " "data " "while " @@ -833,19 +788,15 @@ void BP5Reader::UpdateBuffer(const TimePoint &timeoutInstant, /* Read new meta-meta-data into memory and append to existing one in * memory */ - const size_t metametadataFileSize = - m_FileMetaMetadataManager.GetFileSize(0); + const size_t metametadataFileSize = m_FileMetaMetadataManager.GetFileSize(0); if (metametadataFileSize > m_MetaMetaDataFileAlreadyReadSize) { - const size_t newMMDSize = - metametadataFileSize - m_MetaMetaDataFileAlreadyReadSize; - m_MetaMetadata.Resize(metametadataFileSize, - "(re)allocating meta-meta-data buffer, " - "in call to BP5Reader Open"); - m_FileMetaMetadataManager.ReadFile( - m_MetaMetadata.m_Buffer.data() + - m_MetaMetaDataFileAlreadyReadSize, - newMMDSize, m_MetaMetaDataFileAlreadyReadSize); + const size_t newMMDSize = metametadataFileSize - m_MetaMetaDataFileAlreadyReadSize; + m_MetaMetadata.Resize(metametadataFileSize, "(re)allocating meta-meta-data buffer, " + "in call to BP5Reader Open"); + m_FileMetaMetadataManager.ReadFile(m_MetaMetadata.m_Buffer.data() + + m_MetaMetaDataFileAlreadyReadSize, + newMMDSize, m_MetaMetaDataFileAlreadyReadSize); m_MetaMetaDataFileAlreadyReadSize += newMMDSize; } } @@ -862,16 +813,15 @@ void BP5Reader::UpdateBuffer(const TimePoint &timeoutInstant, { for (size_t Step = 0; Step < m_MetadataIndexTable.size(); Step++) { - m_BP5Deserializer->SetupForStep( - Step, m_WriterMap[m_WriterMapIndex[Step]].WriterCount); + m_BP5Deserializer->SetupForStep(Step, + m_WriterMap[m_WriterMapIndex[Step]].WriterCount); InstallMetadataForTimestep(Step); } } } } -size_t BP5Reader::ParseMetadataIndex(format::BufferSTL &bufferSTL, - const size_t absoluteStartPos, +size_t BP5Reader::ParseMetadataIndex(format::BufferSTL &bufferSTL, const size_t absoluteStartPos, const bool hasHeader) { const auto &buffer = bufferSTL.m_Buffer; @@ -890,12 +840,11 @@ size_t BP5Reader::ParseMetadataIndex(format::BufferSTL &bufferSTL, #ifndef ADIOS2_HAVE_ENDIAN_REVERSE if (helper::IsLittleEndian() != m_Minifooter.IsLittleEndian) { - helper::Throw( - "Engine", "BP5Reader", "ParseMetadataIndex", - "reader found BigEndian bp file, " - "this version of ADIOS2 wasn't compiled " - "with the cmake flag -DADIOS2_USE_Endian_Reverse=ON " - "explicitly, in call to Open"); + helper::Throw("Engine", "BP5Reader", "ParseMetadataIndex", + "reader found BigEndian bp file, " + "this version of ADIOS2 wasn't compiled " + "with the cmake flag -DADIOS2_USE_Endian_Reverse=ON " + "explicitly, in call to Open"); } #endif @@ -904,39 +853,38 @@ size_t BP5Reader::ParseMetadataIndex(format::BufferSTL &bufferSTL, // BP version position = m_BPVersionPosition; - m_Minifooter.Version = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + m_Minifooter.Version = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); if (m_Minifooter.Version != 5) { - helper::Throw( - "Engine", "BP5Reader", "ParseMetadataIndex", - "ADIOS2 BP5 Engine only supports bp format " - "version 5, found " + - std::to_string(m_Minifooter.Version) + " version"); + helper::Throw("Engine", "BP5Reader", "ParseMetadataIndex", + "ADIOS2 BP5 Engine only supports bp format " + "version 5, found " + + std::to_string(m_Minifooter.Version) + + " version"); } // BP minor version, unused position = m_BPMinorVersionPosition; - const uint8_t minorversion = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const uint8_t minorversion = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); if (minorversion != m_BP5MinorVersion) { - helper::Throw( - "Engine", "BP5Reader", "ParseMetadataIndex", - "Current ADIOS2 BP5 Engine only supports version 5." + - std::to_string(m_BP5MinorVersion) + ", found 5." + - std::to_string(minorversion) + " version"); + helper::Throw("Engine", "BP5Reader", "ParseMetadataIndex", + "Current ADIOS2 BP5 Engine only supports version 5." + + std::to_string(m_BP5MinorVersion) + ", found 5." + + std::to_string(minorversion) + " version"); } // Writer active flag position = m_ActiveFlagPosition; - const char activeChar = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const char activeChar = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); m_WriterIsActive = (activeChar == '\1' ? true : false); position = m_ColumnMajorFlagPosition; - const uint8_t val = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const uint8_t val = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); m_WriterIsRowMajor = val == 'n'; // move position to first row position = m_IndexHeaderSize; @@ -959,14 +907,13 @@ size_t BP5Reader::ParseMetadataIndex(format::BufferSTL &bufferSTL, int n = 0; // a loop counter for current run4 int nrec = 0; // number of records in current run - while (position < buffer.size() && - metadataSizeToRead < maxMetadataSizeInMemory) + while (position < buffer.size() && metadataSizeToRead < maxMetadataSizeInMemory) { - const unsigned char recordID = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); - const uint64_t recordLength = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const unsigned char recordID = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t recordLength = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); const size_t dbgRecordStartPosition = position; switch (recordID) @@ -974,18 +921,18 @@ size_t BP5Reader::ParseMetadataIndex(format::BufferSTL &bufferSTL, case IndexRecord::WriterMapRecord: { auto p = m_WriterMap.emplace(m_StepsCount, WriterMapStruct()); auto &s = p.first->second; - s.WriterCount = (uint32_t)helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); - s.AggregatorCount = (uint32_t)helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); - s.SubfileCount = (uint32_t)helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + s.WriterCount = (uint32_t)helper::ReadValue(buffer, position, + m_Minifooter.IsLittleEndian); + s.AggregatorCount = (uint32_t)helper::ReadValue(buffer, position, + m_Minifooter.IsLittleEndian); + s.SubfileCount = (uint32_t)helper::ReadValue(buffer, position, + m_Minifooter.IsLittleEndian); // Get the process -> subfile map s.RankToSubfile.reserve(s.WriterCount); for (uint64_t i = 0; i < s.WriterCount; i++) { - const uint64_t subfileIdx = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t subfileIdx = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); s.RankToSubfile.push_back(subfileIdx); } m_LastMapStep = m_StepsCount; @@ -994,12 +941,12 @@ size_t BP5Reader::ParseMetadataIndex(format::BufferSTL &bufferSTL, } case IndexRecord::StepRecord: { std::vector ptrs; - const uint64_t MetadataPos = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); - const uint64_t MetadataSize = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); - const uint64_t FlushCount = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t MetadataPos = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t MetadataSize = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t FlushCount = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); if (!n) { @@ -1030,8 +977,7 @@ size_t BP5Reader::ParseMetadataIndex(format::BufferSTL &bufferSTL, buffer, DataPosPos, m_Minifooter.IsLittleEndian); const uint64_t DataSize = helper::ReadValue( buffer, DataPosPos, m_Minifooter.IsLittleEndian); - std::cout << "loc:" << DataPos << " siz:" << DataSize - << "; "; + std::cout << "loc:" << DataPos << " siz:" << DataSize << "; "; } const uint64_t DataPos = helper::ReadValue( buffer, DataPosPos, m_Minifooter.IsLittleEndian); @@ -1047,16 +993,14 @@ size_t BP5Reader::ParseMetadataIndex(format::BufferSTL &bufferSTL, MetadataPosTotalSkip += MetadataSize; if (minfo_size > 0) { - m_FilteredMetadataInfo.push_back( - std::make_pair(minfo_pos, minfo_size)); + m_FilteredMetadataInfo.push_back(std::make_pair(minfo_pos, minfo_size)); } minfo_pos = MetadataPos + MetadataSize; minfo_size = 0; } // skip over the writer -> data file offset records - position += - sizeof(uint64_t) * m_LastWriterCount * ((2 * FlushCount) + 1); + position += sizeof(uint64_t) * m_LastWriterCount * ((2 * FlushCount) + 1); ++m_AbsStepsInFile; ++n; break; @@ -1067,11 +1011,9 @@ size_t BP5Reader::ParseMetadataIndex(format::BufferSTL &bufferSTL, { helper::Throw( "Engine", "BP5Reader", "ParseMetadataIndex", - "Record " + std::to_string(nrec) + " (id = " + - std::to_string(recordID) + ") has invalid length " + - std::to_string(recordLength) + ". We parsed " + - std::to_string(position - dbgRecordStartPosition) + - " bytes for this record" + "Record " + std::to_string(nrec) + " (id = " + std::to_string(recordID) + + ") has invalid length " + std::to_string(recordLength) + ". We parsed " + + std::to_string(position - dbgRecordStartPosition) + " bytes for this record" ); } @@ -1089,14 +1031,13 @@ bool BP5Reader::ReadActiveFlag(std::vector &buffer) { if (buffer.size() < m_ActiveFlagPosition) { - helper::Throw( - "Engine", "BP5Reader", "ReadActiveFlag", - "called with a buffer smaller than required"); + helper::Throw("Engine", "BP5Reader", "ReadActiveFlag", + "called with a buffer smaller than required"); } // Writer active flag size_t position = m_ActiveFlagPosition; - const char activeChar = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const char activeChar = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); m_WriterIsActive = (activeChar == '\1' ? true : false); return m_WriterIsActive; } @@ -1110,8 +1051,7 @@ bool BP5Reader::CheckWriterActive() if (fsize >= m_IndexHeaderSize) { std::vector header(m_IndexHeaderSize, '\0'); - m_MDIndexFileManager.ReadFile(header.data(), m_IndexHeaderSize, 0, - 0); + m_MDIndexFileManager.ReadFile(header.data(), m_IndexHeaderSize, 0, 0); bool active = ReadActiveFlag(header); flag = (active ? 1 : 0); } @@ -1179,23 +1119,22 @@ StepStatus BP5Reader::CheckForNewSteps(Seconds timeoutSeconds) return retval; } -void BP5Reader::DoGetAbsoluteSteps(const VariableBase &variable, - std::vector &keys) const +void BP5Reader::DoGetAbsoluteSteps(const VariableBase &variable, std::vector &keys) const { m_BP5Deserializer->GetAbsoluteSteps(variable, keys); return; } -#define declare_type(T) \ - void BP5Reader::DoGetSync(Variable &variable, T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("BP5Reader::Get"); \ - GetSyncCommon(variable, data); \ - } \ - void BP5Reader::DoGetDeferred(Variable &variable, T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("BP5Reader::Get"); \ - GetDeferredCommon(variable, data); \ +#define declare_type(T) \ + void BP5Reader::DoGetSync(Variable &variable, T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("BP5Reader::Get"); \ + GetSyncCommon(variable, data); \ + } \ + void BP5Reader::DoGetDeferred(Variable &variable, T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("BP5Reader::Get"); \ + GetDeferredCommon(variable, data); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/bp5/BP5Reader.h b/source/adios2/engine/bp5/BP5Reader.h index d159ce83d5..a2a8e8c58f 100644 --- a/source/adios2/engine/bp5/BP5Reader.h +++ b/source/adios2/engine/bp5/BP5Reader.h @@ -42,13 +42,11 @@ class BP5Reader : public BP5Engine, public Engine * @param openMode only read * @param comm */ - BP5Reader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + BP5Reader(IO &io, const std::string &name, const Mode mode, helper::Comm comm); ~BP5Reader(); - StepStatus BeginStep(StepMode mode = StepMode::Read, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode = StepMode::Read, const float timeoutSeconds = -1.0) final; size_t CurrentStep() const final; @@ -57,10 +55,8 @@ class BP5Reader : public BP5Engine, public Engine void PerformGets() final; MinVarInfo *MinBlocksInfo(const VariableBase &, const size_t Step) const; - bool VarShape(const VariableBase &Var, const size_t Step, - Dims &Shape) const; - bool VariableMinMax(const VariableBase &, const size_t Step, - MinMaxStruct &MinMax); + bool VarShape(const VariableBase &Var, const size_t Step, Dims &Shape) const; + bool VariableMinMax(const VariableBase &, const size_t Step, MinMaxStruct &MinMax); private: format::BP5Deserializer *m_BP5Deserializer = nullptr; @@ -122,16 +118,14 @@ class BP5Reader : public BP5Engine, public Engine * Return true if slept * return false if sleep was not needed because it was overtime */ - bool SleepOrQuit(const TimePoint &timeoutInstant, - const Seconds &pollSeconds); + bool SleepOrQuit(const TimePoint &timeoutInstant, const Seconds &pollSeconds); /** Open one category of files within timeout. * @return: 0 = OK, 1 = timeout, 2 = error * lasterrmsg contains the error message in case of error */ size_t OpenWithTimeout(transportman::TransportMan &tm, const std::vector &fileNames, - const TimePoint &timeoutInstant, - const Seconds &pollSeconds, + const TimePoint &timeoutInstant, const Seconds &pollSeconds, std::string &lasterrmsg /*INOUT*/); /** Open files within timeout. @@ -147,8 +141,7 @@ class BP5Reader : public BP5Engine, public Engine * track if new steps (after filtering with SelectSteps) are read in * and are ready to be processed. */ - void UpdateBuffer(const TimePoint &timeoutInstant, - const Seconds &pollSeconds, + void UpdateBuffer(const TimePoint &timeoutInstant, const Seconds &pollSeconds, const Seconds &timeoutSeconds); bool ReadActiveFlag(std::vector &buffer); @@ -163,8 +156,7 @@ class BP5Reader : public BP5Engine, public Engine * m_WriterMapIndex * m_FilteredMetadataInfo */ - size_t ParseMetadataIndex(format::BufferSTL &bufferSTL, - const size_t absoluteStartPos, + size_t ParseMetadataIndex(format::BufferSTL &bufferSTL, const size_t absoluteStartPos, const bool hasHeader); /** Process the new metadata coming in (in UpdateBuffer) @@ -198,8 +190,8 @@ class BP5Reader : public BP5Engine, public Engine */ void NotifyEngineNoVarsQuery(); -#define declare_type(T) \ - void DoGetSync(Variable &, T *) final; \ +#define declare_type(T) \ + void DoGetSync(Variable &, T *) final; \ void DoGetDeferred(Variable &, T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -218,8 +210,7 @@ class BP5Reader : public BP5Engine, public Engine size_t DoSteps() const final; - void DoGetAbsoluteSteps(const VariableBase &variable, - std::vector &keys) const final; + void DoGetAbsoluteSteps(const VariableBase &variable, std::vector &keys) const final; uint32_t m_WriterColumnMajor = 0; bool m_ReaderIsRowMajor = true; @@ -231,11 +222,10 @@ class BP5Reader : public BP5Engine, public Engine void InstallMetaMetaData(format::BufferSTL MetaMetadata); void InstallMetadataForTimestep(size_t Step); - std::pair - ReadData(adios2::transportman::TransportMan &FileManager, - const size_t maxOpenFiles, const size_t WriterRank, - const size_t Timestep, const size_t StartOffset, - const size_t Length, char *Destination); + std::pair ReadData(adios2::transportman::TransportMan &FileManager, + const size_t maxOpenFiles, const size_t WriterRank, + const size_t Timestep, const size_t StartOffset, + const size_t Length, char *Destination); struct WriterMapStruct { diff --git a/source/adios2/engine/bp5/BP5Writer.cpp b/source/adios2/engine/bp5/BP5Writer.cpp index 9ba081537f..c0b6462f7a 100644 --- a/source/adios2/engine/bp5/BP5Writer.cpp +++ b/source/adios2/engine/bp5/BP5Writer.cpp @@ -33,12 +33,10 @@ namespace engine using namespace adios2::format; -BP5Writer::BP5Writer(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +BP5Writer::BP5Writer(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("BP5Writer", io, name, mode, std::move(comm)), m_BP5Serializer(), m_FileDataManager(io, m_Comm), m_FileMetadataManager(io, m_Comm), - m_FileMetadataIndexManager(io, m_Comm), m_FileMetaMetadataManager(io, m_Comm), - m_Profiler(m_Comm) + m_FileMetadataIndexManager(io, m_Comm), m_FileMetaMetadataManager(io, m_Comm), m_Profiler(m_Comm) { m_EngineStart = Now(); PERFSTUBS_SCOPED_TIMER("BP5Writer::Open"); @@ -98,15 +96,12 @@ StepStatus BP5Writer::BeginStep(StepMode mode, const float timeoutSeconds) Seconds wait = Now() - wait_start; if (m_Comm.Rank() == 0) { - WriteMetadataFileIndex(m_LatestMetaDataPos, - m_LatestMetaDataSize); + WriteMetadataFileIndex(m_LatestMetaDataPos, m_LatestMetaDataSize); if (m_Parameters.verbose > 0) { - std::cout << "BeginStep, wait on async write was = " - << wait.count() << " time since EndStep was = " - << m_LastTimeBetweenSteps.count() - << " expect next one to be = " - << m_ExpectedTimeBetweenSteps.count() + std::cout << "BeginStep, wait on async write was = " << wait.count() + << " time since EndStep was = " << m_LastTimeBetweenSteps.count() + << " expect next one to be = " << m_ExpectedTimeBetweenSteps.count() << std::endl; } } @@ -117,15 +112,14 @@ StepStatus BP5Writer::BeginStep(StepMode mode, const float timeoutSeconds) if (m_Parameters.BufferVType == (int)BufferVType::MallocVType) { m_BP5Serializer.InitStep(new MallocV( - "BP5Writer", false, m_BP5Serializer.m_BufferAlign, - m_BP5Serializer.m_BufferBlockSize, m_Parameters.InitialBufferSize, - m_Parameters.GrowthFactor)); + "BP5Writer", false, m_BP5Serializer.m_BufferAlign, m_BP5Serializer.m_BufferBlockSize, + m_Parameters.InitialBufferSize, m_Parameters.GrowthFactor)); } else { - m_BP5Serializer.InitStep(new ChunkV( - "BP5Writer", false, m_BP5Serializer.m_BufferAlign, - m_BP5Serializer.m_BufferBlockSize, m_Parameters.BufferChunkSize)); + m_BP5Serializer.InitStep(new ChunkV("BP5Writer", false, m_BP5Serializer.m_BufferAlign, + m_BP5Serializer.m_BufferBlockSize, + m_Parameters.BufferChunkSize)); } m_ThisTimestepDataSize = 0; @@ -140,8 +134,7 @@ void BP5Writer::PerformPuts() { PERFSTUBS_SCOPED_TIMER("BP5Writer::PerformPuts"); m_Profiler.Start("PP"); - m_BP5Serializer.PerformPuts(m_Parameters.AsyncWrite || - m_Parameters.DirectIO); + m_BP5Serializer.PerformPuts(m_Parameters.AsyncWrite || m_Parameters.DirectIO); m_Profiler.Stop("PP"); return; } @@ -151,21 +144,16 @@ void BP5Writer::WriteMetaMetadata( { for (auto &b : MetaMetaBlocks) { - m_FileMetaMetadataManager.WriteFiles((char *)&b.MetaMetaIDLen, - sizeof(size_t)); - m_FileMetaMetadataManager.WriteFiles((char *)&b.MetaMetaInfoLen, - sizeof(size_t)); - m_FileMetaMetadataManager.WriteFiles((char *)b.MetaMetaID, - b.MetaMetaIDLen); - m_FileMetaMetadataManager.WriteFiles((char *)b.MetaMetaInfo, - b.MetaMetaInfoLen); + m_FileMetaMetadataManager.WriteFiles((char *)&b.MetaMetaIDLen, sizeof(size_t)); + m_FileMetaMetadataManager.WriteFiles((char *)&b.MetaMetaInfoLen, sizeof(size_t)); + m_FileMetaMetadataManager.WriteFiles((char *)b.MetaMetaID, b.MetaMetaIDLen); + m_FileMetaMetadataManager.WriteFiles((char *)b.MetaMetaInfo, b.MetaMetaInfoLen); } m_FileMetaMetadataManager.FlushFiles(); } -uint64_t -BP5Writer::WriteMetadata(const std::vector &MetaDataBlocks, - const std::vector &AttributeBlocks) +uint64_t BP5Writer::WriteMetadata(const std::vector &MetaDataBlocks, + const std::vector &AttributeBlocks) { uint64_t MDataTotalSize = 0; uint64_t MetaDataSize = 0; @@ -248,11 +236,10 @@ void BP5Writer::WriteData(format::BufferV *Data) WriteData_TwoLevelShm_Async(Data); break; default: - helper::Throw( - "Engine", "BP5Writer", "WriteData", - "Aggregation method " + - std::to_string(m_Parameters.AggregationType) + - "is not supported in BP5"); + helper::Throw("Engine", "BP5Writer", "WriteData", + "Aggregation method " + + std::to_string(m_Parameters.AggregationType) + + "is not supported in BP5"); } } else @@ -269,22 +256,19 @@ void BP5Writer::WriteData(format::BufferV *Data) WriteData_TwoLevelShm(Data); break; default: - helper::Throw( - "Engine", "BP5Writer", "WriteData", - "Aggregation method " + - std::to_string(m_Parameters.AggregationType) + - "is not supported in BP5"); + helper::Throw("Engine", "BP5Writer", "WriteData", + "Aggregation method " + + std::to_string(m_Parameters.AggregationType) + + "is not supported in BP5"); } m_FileDataManager.FlushFiles(); delete Data; } } -void BP5Writer::WriteData_EveryoneWrites(format::BufferV *Data, - bool SerializedWriters) +void BP5Writer::WriteData_EveryoneWrites(format::BufferV *Data, bool SerializedWriters) { - const aggregator::MPIChain *a = - dynamic_cast(m_Aggregator); + const aggregator::MPIChain *a = dynamic_cast(m_Aggregator); // new step writing starts at offset m_DataPos on aggregator // others will wait for the position to arrive from the rank below @@ -296,8 +280,7 @@ void BP5Writer::WriteData_EveryoneWrites(format::BufferV *Data, } // align to PAGE_SIZE - m_DataPos += - helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); + m_DataPos += helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); m_StartDataPos = m_DataPos; if (!SerializedWriters && a->m_Comm.Rank() < a->m_Comm.Size() - 1) @@ -310,8 +293,7 @@ void BP5Writer::WriteData_EveryoneWrites(format::BufferV *Data, m_DataPos += Data->Size(); std::vector DataVec = Data->DataVec(); - m_FileDataManager.WriteFileAt(DataVec.data(), DataVec.size(), - m_StartDataPos); + m_FileDataManager.WriteFileAt(DataVec.data(), DataVec.size(), m_StartDataPos); if (SerializedWriters && a->m_Comm.Rank() < a->m_Comm.Size() - 1) { @@ -327,8 +309,7 @@ void BP5Writer::WriteData_EveryoneWrites(format::BufferV *Data, // so it can update its data pos if (a->m_Comm.Rank() == a->m_Comm.Size() - 1) { - a->m_Comm.Isend(&m_DataPos, 1, 0, 0, - "Final chain token in BP5Writer::WriteData"); + a->m_Comm.Isend(&m_DataPos, 1, 0, 0, "Final chain token in BP5Writer::WriteData"); } if (a->m_Comm.Rank() == 0) { @@ -338,13 +319,11 @@ void BP5Writer::WriteData_EveryoneWrites(format::BufferV *Data, } } -void BP5Writer::WriteMetadataFileIndex(uint64_t MetaDataPos, - uint64_t MetaDataSize) +void BP5Writer::WriteMetadataFileIndex(uint64_t MetaDataPos, uint64_t MetaDataSize) { // bufsize: Step record size_t bufsize = - 1 + (4 + ((FlushPosSizeInfo.size() * 2) + 1) * m_Comm.Size()) * - sizeof(uint64_t); + 1 + (4 + ((FlushPosSizeInfo.size() * 2) + 1) * m_Comm.Size()) * sizeof(uint64_t); if (MetaDataPos == 0) { // First time, write the headers @@ -380,16 +359,14 @@ void BP5Writer::WriteMetadataFileIndex(uint64_t MetaDataPos, helper::CopyToBuffer(buf, pos, &d, 1); d = static_cast(m_Aggregator->m_SubStreams); helper::CopyToBuffer(buf, pos, &d, 1); - helper::CopyToBuffer(buf, pos, m_WriterSubfileMap.data(), - m_Comm.Size()); + helper::CopyToBuffer(buf, pos, m_WriterSubfileMap.data(), m_Comm.Size()); m_WriterSubfileMap.clear(); } // Step record record = StepRecord; helper::CopyToBuffer(buf, pos, &record, 1); // record type - d = (3 + ((FlushPosSizeInfo.size() * 2) + 1) * m_Comm.Size()) * - sizeof(uint64_t); + d = (3 + ((FlushPosSizeInfo.size() * 2) + 1) * m_Comm.Size()) * sizeof(uint64_t); helper::CopyToBuffer(buf, pos, &d, 1); // record length helper::CopyToBuffer(buf, pos, &MetaDataPos, 1); helper::CopyToBuffer(buf, pos, &MetaDataSize, 1); @@ -398,12 +375,10 @@ void BP5Writer::WriteMetadataFileIndex(uint64_t MetaDataPos, for (int writer = 0; writer < m_Comm.Size(); writer++) { - for (size_t flushNum = 0; flushNum < FlushPosSizeInfo.size(); - flushNum++) + for (size_t flushNum = 0; flushNum < FlushPosSizeInfo.size(); flushNum++) { // add two numbers here - helper::CopyToBuffer(buf, pos, - &FlushPosSizeInfo[flushNum][2 * writer], 2); + helper::CopyToBuffer(buf, pos, &FlushPosSizeInfo[flushNum][2 * writer], 2); } helper::CopyToBuffer(buf, pos, &m_WriterDataPos[writer], 1); } @@ -420,11 +395,9 @@ void BP5Writer::WriteMetadataFileIndex(uint64_t MetaDataPos, for (size_t j = 0; j < FlushPosSizeInfo.size(); ++j) { std::cout << "loc:" << buf[3 + eachWriterSize * i + j * 2] - << " siz:" << buf[3 + eachWriterSize * i + j * 2 + 1] - << std::endl; + << " siz:" << buf[3 + eachWriterSize * i + j * 2 + 1] << std::endl; } - std::cout << "loc:" << buf[3 + eachWriterSize * (i + 1) - 1] - << std::endl; + std::cout << "loc:" << buf[3 + eachWriterSize * (i + 1) - 1] << std::endl; } std::cout << "}" << std::endl; #endif @@ -436,13 +409,11 @@ void BP5Writer::WriteMetadataFileIndex(uint64_t MetaDataPos, void BP5Writer::NotifyEngineAttribute(std::string name, DataType type) noexcept { - helper::Throw( - "BP5Writer", "Engine", "ThrowUp", - "Engine does not support NotifyEngineAttribute"); + helper::Throw("BP5Writer", "Engine", "ThrowUp", + "Engine does not support NotifyEngineAttribute"); } -void BP5Writer::NotifyEngineAttribute(std::string name, AttributeBase *Attr, - void *data) noexcept +void BP5Writer::NotifyEngineAttribute(std::string name, AttributeBase *Attr, void *data) noexcept { if (!m_Parameters.UseOneTimeAttributes) { @@ -483,8 +454,7 @@ void BP5Writer::MarshalAttributes() } else if (type == helper::GetDataType()) { - core::Attribute &attribute = - *m_IO.InquireAttribute(name); + core::Attribute &attribute = *m_IO.InquireAttribute(name); void *data_addr; if (attribute.m_IsSingleValue) { @@ -492,8 +462,7 @@ void BP5Writer::MarshalAttributes() } else { - const char **tmp = - (const char **)malloc(sizeof(char *) * element_count); + const char **tmp = (const char **)malloc(sizeof(char *) * element_count); for (int i = 0; i < element_count; i++) { auto str = &attribute.m_DataArray[i]; @@ -503,22 +472,22 @@ void BP5Writer::MarshalAttributes() data_addr = (void *)tmp; } - m_BP5Serializer.MarshalAttribute(name.c_str(), type, sizeof(char *), - element_count, data_addr); + m_BP5Serializer.MarshalAttribute(name.c_str(), type, sizeof(char *), element_count, + data_addr); } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - core::Attribute &attribute = *m_IO.InquireAttribute(name); \ - int element_count = -1; \ - void *data_addr = &attribute.m_DataSingleValue; \ - if (!attribute.m_IsSingleValue) \ - { \ - element_count = (int)attribute.m_Elements; \ - data_addr = attribute.m_DataArray.data(); \ - } \ - m_BP5Serializer.MarshalAttribute(attribute.m_Name.c_str(), type, \ - sizeof(T), element_count, data_addr); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + core::Attribute &attribute = *m_IO.InquireAttribute(name); \ + int element_count = -1; \ + void *data_addr = &attribute.m_DataSingleValue; \ + if (!attribute.m_IsSingleValue) \ + { \ + element_count = (int)attribute.m_Elements; \ + data_addr = attribute.m_DataArray.data(); \ + } \ + m_BP5Serializer.MarshalAttribute(attribute.m_Name.c_str(), type, sizeof(T), element_count, \ + data_addr); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) @@ -538,8 +507,8 @@ void BP5Writer::EndStep() MarshalAttributes(); // true: advances step - auto TSInfo = m_BP5Serializer.CloseTimestep( - (int)m_WriterStep, m_Parameters.AsyncWrite || m_Parameters.DirectIO); + auto TSInfo = m_BP5Serializer.CloseTimestep((int)m_WriterStep, + m_Parameters.AsyncWrite || m_Parameters.DirectIO); /* TSInfo includes NewMetaMetaBlocks, the MetaEncodeBuffer, the * AttributeEncodeBuffer and the data encode Vector */ @@ -565,24 +534,20 @@ void BP5Writer::EndStep() */ m_Profiler.Start("ES_meta1"); std::vector MetaBuffer; - core::iovec m{TSInfo.MetaEncodeBuffer->Data(), - TSInfo.MetaEncodeBuffer->m_FixedSize}; + core::iovec m{TSInfo.MetaEncodeBuffer->Data(), TSInfo.MetaEncodeBuffer->m_FixedSize}; core::iovec a{nullptr, 0}; if (TSInfo.AttributeEncodeBuffer) { - a = {TSInfo.AttributeEncodeBuffer->Data(), - TSInfo.AttributeEncodeBuffer->m_FixedSize}; + a = {TSInfo.AttributeEncodeBuffer->Data(), TSInfo.AttributeEncodeBuffer->m_FixedSize}; } MetaBuffer = m_BP5Serializer.CopyMetadataToContiguous( - TSInfo.NewMetaMetaBlocks, {m}, {a}, {m_ThisTimestepDataSize}, - {m_StartDataPos}); + TSInfo.NewMetaMetaBlocks, {m}, {a}, {m_ThisTimestepDataSize}, {m_StartDataPos}); if (m_Aggregator->m_Comm.Size() > 1) { // level 1 m_Profiler.Start("ES_meta1_gather"); size_t LocalSize = MetaBuffer.size(); - std::vector RecvCounts = - m_Aggregator->m_Comm.GatherValues(LocalSize, 0); + std::vector RecvCounts = m_Aggregator->m_Comm.GatherValues(LocalSize, 0); std::vector RecvBuffer; if (m_Aggregator->m_Comm.Rank() == 0) { @@ -594,25 +559,22 @@ void BP5Writer::EndStep() << TotalSize << " bytes from aggregator group" << std::endl;*/ } - m_Aggregator->m_Comm.GathervArrays(MetaBuffer.data(), LocalSize, - RecvCounts.data(), RecvCounts.size(), - RecvBuffer.data(), 0); + m_Aggregator->m_Comm.GathervArrays(MetaBuffer.data(), LocalSize, RecvCounts.data(), + RecvCounts.size(), RecvBuffer.data(), 0); m_Profiler.Stop("ES_meta1_gather"); if (m_Aggregator->m_Comm.Rank() == 0) { - std::vector - UniqueMetaMetaBlocks; + std::vector UniqueMetaMetaBlocks; std::vector DataSizes; std::vector WriterDataPositions; std::vector AttributeBlocks; auto Metadata = m_BP5Serializer.BreakoutContiguousMetadata( - RecvBuffer, RecvCounts, UniqueMetaMetaBlocks, AttributeBlocks, - DataSizes, WriterDataPositions); + RecvBuffer, RecvCounts, UniqueMetaMetaBlocks, AttributeBlocks, DataSizes, + WriterDataPositions); MetaBuffer.clear(); MetaBuffer = m_BP5Serializer.CopyMetadataToContiguous( - UniqueMetaMetaBlocks, Metadata, AttributeBlocks, DataSizes, - WriterDataPositions); + UniqueMetaMetaBlocks, Metadata, AttributeBlocks, DataSizes, WriterDataPositions); } } // level 1 m_Profiler.Stop("ES_meta1"); @@ -639,9 +601,8 @@ void BP5Writer::EndStep() << std::endl;*/ } - m_CommAggregators.GathervArrays( - MetaBuffer.data(), LocalSize, RecvCounts.data(), - RecvCounts.size(), RecvBuffer.data(), 0); + m_CommAggregators.GathervArrays(MetaBuffer.data(), LocalSize, RecvCounts.data(), + RecvCounts.size(), RecvBuffer.data(), 0); buf = &RecvBuffer; m_Profiler.Stop("ES_meta2_gather"); } @@ -653,23 +614,20 @@ void BP5Writer::EndStep() if (m_CommAggregators.Rank() == 0) { - std::vector - UniqueMetaMetaBlocks; + std::vector UniqueMetaMetaBlocks; std::vector DataSizes; std::vector AttributeBlocks; m_WriterDataPos.resize(0); auto Metadata = m_BP5Serializer.BreakoutContiguousMetadata( - *buf, RecvCounts, UniqueMetaMetaBlocks, AttributeBlocks, - DataSizes, m_WriterDataPos); - assert(m_WriterDataPos.size() == - static_cast(m_Comm.Size())); + *buf, RecvCounts, UniqueMetaMetaBlocks, AttributeBlocks, DataSizes, + m_WriterDataPos); + assert(m_WriterDataPos.size() == static_cast(m_Comm.Size())); WriteMetaMetadata(UniqueMetaMetaBlocks); m_LatestMetaDataPos = m_MetaDataPos; m_LatestMetaDataSize = WriteMetadata(Metadata, AttributeBlocks); if (!m_Parameters.AsyncWrite) { - WriteMetadataFileIndex(m_LatestMetaDataPos, - m_LatestMetaDataSize); + WriteMetadataFileIndex(m_LatestMetaDataPos, m_LatestMetaDataSize); } } } // level 2 @@ -717,18 +675,15 @@ void BP5Writer::InitParameters() m_DrainBB = m_WriteToBB && m_Parameters.BurstBufferDrain; unsigned int nproc = (unsigned int)m_Comm.Size(); - m_Parameters.NumAggregators = - helper::SetWithinLimit(m_Parameters.NumAggregators, 0U, nproc); - m_Parameters.NumSubFiles = - helper::SetWithinLimit(m_Parameters.NumSubFiles, 0U, nproc); - m_Parameters.AggregatorRatio = - helper::SetWithinLimit(m_Parameters.AggregatorRatio, 0U, nproc); + m_Parameters.NumAggregators = helper::SetWithinLimit(m_Parameters.NumAggregators, 0U, nproc); + m_Parameters.NumSubFiles = helper::SetWithinLimit(m_Parameters.NumSubFiles, 0U, nproc); + m_Parameters.AggregatorRatio = helper::SetWithinLimit(m_Parameters.AggregatorRatio, 0U, nproc); if (m_Parameters.NumAggregators == 0) { if (m_Parameters.AggregatorRatio > 0) { - m_Parameters.NumAggregators = helper::SetWithinLimit( - nproc / m_Parameters.AggregatorRatio, 0U, nproc); + m_Parameters.NumAggregators = + helper::SetWithinLimit(nproc / m_Parameters.AggregatorRatio, 0U, nproc); } else if (m_Parameters.NumSubFiles > 0) { @@ -736,12 +691,11 @@ void BP5Writer::InitParameters() helper::SetWithinLimit(m_Parameters.NumSubFiles, 0U, nproc); } } - m_Parameters.NumSubFiles = helper::SetWithinLimit( - m_Parameters.NumSubFiles, 0U, m_Parameters.NumAggregators); + m_Parameters.NumSubFiles = + helper::SetWithinLimit(m_Parameters.NumSubFiles, 0U, m_Parameters.NumAggregators); // Limiting to max 64MB page size - m_Parameters.StripeSize = - helper::SetWithinLimit(m_Parameters.StripeSize, 0U, 67108864U); + m_Parameters.StripeSize = helper::SetWithinLimit(m_Parameters.StripeSize, 0U, 67108864U); if (m_Parameters.StripeSize == 0) { m_Parameters.StripeSize = 4096; @@ -757,16 +711,12 @@ void BP5Writer::InitParameters() m_BP5Serializer.m_BufferAlign = m_Parameters.DirectIOAlignBuffer; if (m_Parameters.StripeSize % m_Parameters.DirectIOAlignOffset) { - size_t k = - m_Parameters.StripeSize / m_Parameters.DirectIOAlignOffset + 1; - m_Parameters.StripeSize = - (unsigned int)(k * m_Parameters.DirectIOAlignOffset); + size_t k = m_Parameters.StripeSize / m_Parameters.DirectIOAlignOffset + 1; + m_Parameters.StripeSize = (unsigned int)(k * m_Parameters.DirectIOAlignOffset); } if (m_Parameters.BufferChunkSize % m_Parameters.DirectIOAlignOffset) { - size_t k = m_Parameters.BufferChunkSize / - m_Parameters.DirectIOAlignOffset + - 1; + size_t k = m_Parameters.BufferChunkSize / m_Parameters.DirectIOAlignOffset + 1; m_Parameters.BufferChunkSize = k * m_Parameters.DirectIOAlignOffset; } } @@ -797,30 +747,26 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) { std::string m = (IsLittleEndian ? "Little" : "Big"); - helper::Throw( - "Engine", "BP5Writer", "CountStepsInMetadataIndex", - "ADIOS2 BP5 Engine only supports appending with the same " - "endianness. The existing file is " + - m + "Endian"); + helper::Throw("Engine", "BP5Writer", "CountStepsInMetadataIndex", + "ADIOS2 BP5 Engine only supports appending with the same " + "endianness. The existing file is " + + m + "Endian"); } // BP version position = m_BPVersionPosition; - uint8_t Version = - helper::ReadValue(buffer, position, IsLittleEndian); + uint8_t Version = helper::ReadValue(buffer, position, IsLittleEndian); if (Version != 5) { - helper::Throw( - "Engine", "BP5Writer", "CountStepsInMetadataIndex", - "ADIOS2 BP5 Engine only supports bp format " - "version 5, found " + - std::to_string(Version) + " version"); + helper::Throw("Engine", "BP5Writer", "CountStepsInMetadataIndex", + "ADIOS2 BP5 Engine only supports bp format " + "version 5, found " + + std::to_string(Version) + " version"); } // BP minor version position = m_BPMinorVersionPosition; - uint8_t minorVersion = - helper::ReadValue(buffer, position, IsLittleEndian); + uint8_t minorVersion = helper::ReadValue(buffer, position, IsLittleEndian); if (minorVersion != m_BP5MinorVersion) { helper::Throw( @@ -831,19 +777,16 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) } position = m_ColumnMajorFlagPosition; - const uint8_t columnMajor = - helper::ReadValue(buffer, position, IsLittleEndian); - const uint8_t NowColumnMajor = - (m_IO.m_ArrayOrder == ArrayOrdering::ColumnMajor) ? 'y' : 'n'; + const uint8_t columnMajor = helper::ReadValue(buffer, position, IsLittleEndian); + const uint8_t NowColumnMajor = (m_IO.m_ArrayOrder == ArrayOrdering::ColumnMajor) ? 'y' : 'n'; if (columnMajor != NowColumnMajor) { std::string m = (columnMajor == 'y' ? "column" : "row"); - helper::Throw( - "Engine", "BP5Writer", "CountStepsInMetadataIndex", - "ADIOS2 BP5 Engine only supports appending with the same " - "column/row major settings as it was written." - " Existing file is " + - m + " major"); + helper::Throw("Engine", "BP5Writer", "CountStepsInMetadataIndex", + "ADIOS2 BP5 Engine only supports appending with the same " + "column/row major settings as it was written." + " Existing file is " + + m + " major"); } position = m_IndexHeaderSize; // after the header @@ -859,12 +802,12 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) switch (recordID) { case IndexRecord::WriterMapRecord: { - m_AppendWriterCount = (uint32_t)helper::ReadValue( - buffer, position, IsLittleEndian); - m_AppendAggregatorCount = (uint32_t)helper::ReadValue( - buffer, position, IsLittleEndian); - m_AppendSubfileCount = (uint32_t)helper::ReadValue( - buffer, position, IsLittleEndian); + m_AppendWriterCount = + (uint32_t)helper::ReadValue(buffer, position, IsLittleEndian); + m_AppendAggregatorCount = + (uint32_t)helper::ReadValue(buffer, position, IsLittleEndian); + m_AppendSubfileCount = + (uint32_t)helper::ReadValue(buffer, position, IsLittleEndian); if (m_AppendSubfileCount > nDataFiles) { nDataFiles = m_AppendSubfileCount; @@ -878,8 +821,7 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) const uint64_t FlushCount = helper::ReadValue(buffer, position, IsLittleEndian); // jump over the metadata positions - position += - sizeof(uint64_t) * m_AppendWriterCount * ((2 * FlushCount) + 1); + position += sizeof(uint64_t) * m_AppendWriterCount * ((2 * FlushCount) + 1); availableSteps++; break; } @@ -944,26 +886,26 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) switch (recordID) { case IndexRecord::WriterMapRecord: { - m_AppendWriterCount = (uint32_t)helper::ReadValue( - buffer, position, IsLittleEndian); - m_AppendAggregatorCount = (uint32_t)helper::ReadValue( - buffer, position, IsLittleEndian); - m_AppendSubfileCount = (uint32_t)helper::ReadValue( - buffer, position, IsLittleEndian); + m_AppendWriterCount = + (uint32_t)helper::ReadValue(buffer, position, IsLittleEndian); + m_AppendAggregatorCount = + (uint32_t)helper::ReadValue(buffer, position, IsLittleEndian); + m_AppendSubfileCount = + (uint32_t)helper::ReadValue(buffer, position, IsLittleEndian); // Get the process -> subfile map writerToFileMap.clear(); for (uint64_t i = 0; i < m_AppendWriterCount; i++) { - const uint64_t subfileIdx = helper::ReadValue( - buffer, position, IsLittleEndian); + const uint64_t subfileIdx = + helper::ReadValue(buffer, position, IsLittleEndian); writerToFileMap.push_back(subfileIdx); } break; } case IndexRecord::StepRecord: { - m_AppendMetadataIndexPos = position - sizeof(unsigned char) - - sizeof(uint64_t); // pos of RecordID + m_AppendMetadataIndexPos = + position - sizeof(unsigned char) - sizeof(uint64_t); // pos of RecordID const uint64_t MetadataPos = helper::ReadValue(buffer, position, IsLittleEndian); position += sizeof(uint64_t); // MetadataSize @@ -979,11 +921,9 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) for (uint64_t i = 0; i < m_AppendWriterCount; i++) { // first flush/write position will do - const size_t FirstDataPos = - static_cast(helper::ReadValue( - buffer, position, IsLittleEndian)); - position += - sizeof(uint64_t) * 2 * FlushCount; // no need to read + const size_t FirstDataPos = static_cast( + helper::ReadValue(buffer, position, IsLittleEndian)); + position += sizeof(uint64_t) * 2 * FlushCount; // no need to read /* std::cout << "Writer " << i << " subfile " << writerToFileMap[i] << " first data loc:" << FirstDataPos << std::endl; */ @@ -996,8 +936,7 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) else { // jump over all data offsets in this step - position += sizeof(uint64_t) * m_AppendWriterCount * - (1 + 2 * FlushCount); + position += sizeof(uint64_t) * m_AppendWriterCount * (1 + 2 * FlushCount); } currentStep++; break; @@ -1015,24 +954,21 @@ void BP5Writer::InitAggregator() // m_Aggregator.m_SubFileIndex is always set if (m_Parameters.AggregationType == (int)AggregationType::EveryoneWrites || - m_Parameters.AggregationType == - (int)AggregationType::EveryoneWritesSerial) + m_Parameters.AggregationType == (int)AggregationType::EveryoneWritesSerial) { m_Parameters.NumSubFiles = m_Parameters.NumAggregators; - m_AggregatorEveroneWrites.Init(m_Parameters.NumAggregators, - m_Parameters.NumSubFiles, m_Comm); + m_AggregatorEveroneWrites.Init(m_Parameters.NumAggregators, m_Parameters.NumSubFiles, + m_Comm); m_IAmDraining = m_AggregatorEveroneWrites.m_IsAggregator; m_IAmWritingData = true; DataWritingComm = &m_AggregatorEveroneWrites.m_Comm; - m_Aggregator = static_cast( - &m_AggregatorEveroneWrites); + m_Aggregator = static_cast(&m_AggregatorEveroneWrites); } else { size_t numNodes = m_AggregatorTwoLevelShm.PreInit(m_Comm); (void)numNodes; - m_AggregatorTwoLevelShm.Init(m_Parameters.NumAggregators, - m_Parameters.NumSubFiles, m_Comm); + m_AggregatorTwoLevelShm.Init(m_Parameters.NumAggregators, m_Parameters.NumSubFiles, m_Comm); /*std::cout << "Rank " << m_RankMPI << " aggr? " << m_AggregatorTwoLevelShm.m_IsAggregator << " master? " @@ -1045,16 +981,14 @@ void BP5Writer::InitAggregator() m_IAmDraining = m_AggregatorTwoLevelShm.m_IsMasterAggregator; m_IAmWritingData = m_AggregatorTwoLevelShm.m_IsAggregator; DataWritingComm = &m_AggregatorTwoLevelShm.m_AggregatorChainComm; - m_Aggregator = - static_cast(&m_AggregatorTwoLevelShm); + m_Aggregator = static_cast(&m_AggregatorTwoLevelShm); } /* comm for Aggregators only. * We are only interested in the chain of rank 0s */ int color = m_Aggregator->m_Comm.Rank(); - m_CommAggregators = - m_Comm.Split(color, 0, "creating level 2 chain of aggregators at Open"); + m_CommAggregators = m_Comm.Split(color, 0, "creating level 2 chain of aggregators at Open"); } void BP5Writer::InitTransports() @@ -1082,12 +1016,10 @@ void BP5Writer::InitTransports() // Names passed to IO AddTransport option with key "Name" const std::vector transportsNames = - m_FileDataManager.GetFilesBaseNames(m_BBName, - m_IO.m_TransportsParameters); + m_FileDataManager.GetFilesBaseNames(m_BBName, m_IO.m_TransportsParameters); // /path/name.bp.dir/name.bp.rank - m_SubStreamNames = - GetBPSubStreamNames(transportsNames, m_Aggregator->m_SubStreamIndex); + m_SubStreamNames = GetBPSubStreamNames(transportsNames, m_Aggregator->m_SubStreamIndex); if (m_IAmDraining) { @@ -1095,10 +1027,9 @@ void BP5Writer::InitTransports() if (m_DrainBB) { const std::vector drainTransportNames = - m_FileDataManager.GetFilesBaseNames( - m_Name, m_IO.m_TransportsParameters); - m_DrainSubStreamNames = GetBPSubStreamNames( - drainTransportNames, m_Aggregator->m_SubStreamIndex); + m_FileDataManager.GetFilesBaseNames(m_Name, m_IO.m_TransportsParameters); + m_DrainSubStreamNames = + GetBPSubStreamNames(drainTransportNames, m_Aggregator->m_SubStreamIndex); /* start up BB thread */ // m_FileDrainer.SetVerbose( // m_Parameters.BurstBufferVerbose, @@ -1116,15 +1047,13 @@ void BP5Writer::InitTransports() m_MetaMetadataFileNames = GetBPMetaMetadataFileNames(transportsNames); m_MetadataIndexFileNames = GetBPMetadataIndexFileNames(transportsNames); } - m_FileMetadataManager.MkDirsBarrier(m_MetadataFileNames, - m_IO.m_TransportsParameters, + m_FileMetadataManager.MkDirsBarrier(m_MetadataFileNames, m_IO.m_TransportsParameters, m_Parameters.NodeLocal || m_WriteToBB); /* Create the directories on burst buffer if used */ if (m_DrainBB) { /* Create the directories on target anyway by main thread */ - m_FileDataManager.MkDirsBarrier(m_DrainSubStreamNames, - m_IO.m_TransportsParameters, + m_FileDataManager.MkDirsBarrier(m_DrainSubStreamNames, m_IO.m_TransportsParameters, m_Parameters.NodeLocal); } @@ -1150,9 +1079,8 @@ void BP5Writer::InitTransports() if (m_IAmWritingData) { - m_FileDataManager.OpenFiles(m_SubStreamNames, m_OpenMode, - m_IO.m_TransportsParameters, useProfiler, - *DataWritingComm); + m_FileDataManager.OpenFiles(m_SubStreamNames, m_OpenMode, m_IO.m_TransportsParameters, + useProfiler, *DataWritingComm); } if (m_IAmDraining) @@ -1174,26 +1102,20 @@ void BP5Writer::InitTransports() m_IO.m_TransportsParameters[i]["DirectIO"] = "false"; } m_FileMetaMetadataManager.OpenFiles(m_MetaMetadataFileNames, m_OpenMode, - m_IO.m_TransportsParameters, - useProfiler); + m_IO.m_TransportsParameters, useProfiler); m_FileMetadataManager.OpenFiles(m_MetadataFileNames, m_OpenMode, - m_IO.m_TransportsParameters, - useProfiler); + m_IO.m_TransportsParameters, useProfiler); - m_FileMetadataIndexManager.OpenFiles( - m_MetadataIndexFileNames, m_OpenMode, m_IO.m_TransportsParameters, - useProfiler); + m_FileMetadataIndexManager.OpenFiles(m_MetadataIndexFileNames, m_OpenMode, + m_IO.m_TransportsParameters, useProfiler); if (m_DrainBB) { const std::vector drainTransportNames = - m_FileDataManager.GetFilesBaseNames( - m_Name, m_IO.m_TransportsParameters); - m_DrainMetadataFileNames = - GetBPMetadataFileNames(drainTransportNames); - m_DrainMetadataIndexFileNames = - GetBPMetadataIndexFileNames(drainTransportNames); + m_FileDataManager.GetFilesBaseNames(m_Name, m_IO.m_TransportsParameters); + m_DrainMetadataFileNames = GetBPMetadataFileNames(drainTransportNames); + m_DrainMetadataIndexFileNames = GetBPMetadataIndexFileNames(drainTransportNames); for (const auto &name : m_DrainMetadataFileNames) { @@ -1208,11 +1130,11 @@ void BP5Writer::InitTransports() } /*generate the header for the metadata index file*/ -void BP5Writer::MakeHeader(std::vector &buffer, size_t &position, - const std::string fileType, const bool isActive) +void BP5Writer::MakeHeader(std::vector &buffer, size_t &position, const std::string fileType, + const bool isActive) { - auto lf_CopyVersionChar = [](const std::string version, - std::vector &buffer, size_t &position) { + auto lf_CopyVersionChar = [](const std::string version, std::vector &buffer, + size_t &position) { helper::CopyToBuffer(buffer, position, version.c_str()); }; @@ -1225,8 +1147,7 @@ void BP5Writer::MakeHeader(std::vector &buffer, size_t &position, "Engine", "BP5Writer", "MakeHeader", "BP4Serializer::MakeHeader can only be called for an empty " "buffer. This one for " + - fileType + " already has content of " + - std::to_string(position) + " bytes."); + fileType + " already has content of " + std::to_string(position) + " bytes."); } if (buffer.size() < m_IndexHeaderSize) @@ -1246,27 +1167,24 @@ void BP5Writer::MakeHeader(std::vector &buffer, size_t &position, "ADIOS Coding ERROR in BP4Serializer::MakeHeader. Version Tag " "position mismatch"); } - std::string versionLongTag("ADIOS-BP v" + majorVersion + "." + - minorVersion + "." + patchVersion + " "); + std::string versionLongTag("ADIOS-BP v" + majorVersion + "." + minorVersion + "." + + patchVersion + " "); size_t maxTypeLen = m_VersionTagLength - versionLongTag.size(); const std::string fileTypeStr = fileType.substr(0, maxTypeLen); versionLongTag += fileTypeStr; const size_t versionLongTagSize = versionLongTag.size(); if (versionLongTagSize < m_VersionTagLength) { - helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), - versionLongTagSize); + helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), versionLongTagSize); position += m_VersionTagLength - versionLongTagSize; } else if (versionLongTagSize > m_VersionTagLength) { - helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), - m_VersionTagLength); + helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), m_VersionTagLength); } else { - helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), - m_VersionTagLength); + helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), m_VersionTagLength); } // byte 32-35: MAJOR MINOR PATCH Unused @@ -1294,10 +1212,9 @@ void BP5Writer::MakeHeader(std::vector &buffer, size_t &position, // byte 37: BP Version 5 if (position != m_BPVersionPosition) { - helper::Throw( - "Engine", "BP5Writer", "MakeHeader", - "ADIOS Coding ERROR in BP5Writer::MakeHeader. BP Version " - "position mismatch"); + helper::Throw("Engine", "BP5Writer", "MakeHeader", + "ADIOS Coding ERROR in BP5Writer::MakeHeader. BP Version " + "position mismatch"); } const uint8_t version = 5; helper::CopyToBuffer(buffer, position, &version); @@ -1326,8 +1243,7 @@ void BP5Writer::MakeHeader(std::vector &buffer, size_t &position, // byte 40 columnMajor // write if data is column major in metadata and data - const uint8_t columnMajor = - (m_IO.m_ArrayOrder == ArrayOrdering::ColumnMajor) ? 'y' : 'n'; + const uint8_t columnMajor = (m_IO.m_ArrayOrder == ArrayOrdering::ColumnMajor) ? 'y' : 'n'; helper::CopyToBuffer(buffer, position, &columnMajor); // byte 41-63: unused @@ -1338,8 +1254,7 @@ void BP5Writer::MakeHeader(std::vector &buffer, size_t &position, void BP5Writer::UpdateActiveFlag(const bool active) { const char activeChar = (active ? '\1' : '\0'); - m_FileMetadataIndexManager.WriteFileAt(&activeChar, 1, - m_ActiveFlagPosition); + m_FileMetadataIndexManager.WriteFileAt(&activeChar, 1, m_ActiveFlagPosition); m_FileMetadataIndexManager.FlushFiles(); m_FileMetadataIndexManager.SeekToFileEnd(); if (m_DrainBB) @@ -1347,8 +1262,7 @@ void BP5Writer::UpdateActiveFlag(const bool active) for (size_t i = 0; i < m_MetadataIndexFileNames.size(); ++i) { m_FileDrainer.AddOperationWriteAt(m_DrainMetadataIndexFileNames[i], - m_ActiveFlagPosition, 1, - &activeChar); + m_ActiveFlagPosition, 1, &activeChar); m_FileDrainer.AddOperationSeekEnd(m_DrainMetadataIndexFileNames[i]); } } @@ -1363,14 +1277,12 @@ void BP5Writer::InitBPBuffer() if (m_Comm.Rank() == 0) { - preMetadataIndexFileSize = - m_FileMetadataIndexManager.GetFileSize(0); + preMetadataIndexFileSize = m_FileMetadataIndexManager.GetFileSize(0); preMetadataIndex.m_Buffer.resize(preMetadataIndexFileSize); - preMetadataIndex.m_Buffer.assign(preMetadataIndex.m_Buffer.size(), - '\0'); + preMetadataIndex.m_Buffer.assign(preMetadataIndex.m_Buffer.size(), '\0'); preMetadataIndex.m_Position = 0; - m_FileMetadataIndexManager.ReadFile( - preMetadataIndex.m_Buffer.data(), preMetadataIndexFileSize); + m_FileMetadataIndexManager.ReadFile(preMetadataIndex.m_Buffer.data(), + preMetadataIndexFileSize); } m_Comm.BroadcastVector(preMetadataIndex.m_Buffer); m_WriterStep = CountStepsInMetadataIndex(preMetadataIndex); @@ -1463,16 +1375,12 @@ void BP5Writer::InitBPBuffer() m_WriterDataPos.resize(m_Comm.Size()); } - if (!m_WriterStep || - m_AppendWriterCount != static_cast(m_Comm.Size()) || - m_AppendAggregatorCount != - static_cast(m_Aggregator->m_NumAggregators) || - m_AppendSubfileCount != - static_cast(m_Aggregator->m_SubStreams)) + if (!m_WriterStep || m_AppendWriterCount != static_cast(m_Comm.Size()) || + m_AppendAggregatorCount != static_cast(m_Aggregator->m_NumAggregators) || + m_AppendSubfileCount != static_cast(m_Aggregator->m_SubStreams)) { // new Writer Map is needed, generate now, write later - const uint64_t a = - static_cast(m_Aggregator->m_SubStreamIndex); + const uint64_t a = static_cast(m_Aggregator->m_SubStreamIndex); m_WriterSubfileMap = m_Comm.GatherValues(a, 0); } } @@ -1516,8 +1424,7 @@ void BP5Writer::FlushData(const bool isFinal) { DataBuf = m_BP5Serializer.ReinitStepData( new MallocV("BP5Writer", false, m_BP5Serializer.m_BufferAlign, - m_BP5Serializer.m_BufferBlockSize, - m_Parameters.InitialBufferSize, + m_BP5Serializer.m_BufferBlockSize, m_Parameters.InitialBufferSize, m_Parameters.GrowthFactor), m_Parameters.AsyncWrite || m_Parameters.DirectIO); } @@ -1525,8 +1432,7 @@ void BP5Writer::FlushData(const bool isFinal) { DataBuf = m_BP5Serializer.ReinitStepData( new ChunkV("BP5Writer", false, m_BP5Serializer.m_BufferAlign, - m_BP5Serializer.m_BufferBlockSize, - m_Parameters.BufferChunkSize), + m_BP5Serializer.m_BufferBlockSize, m_Parameters.BufferChunkSize), m_Parameters.AsyncWrite || m_Parameters.DirectIO); } @@ -1570,8 +1476,8 @@ void BP5Writer::DestructorClose(bool Verbose) noexcept { if (Verbose) { - std::cerr << "BP5 Writer \"" << m_Name - << "\" Destroyed without a prior Close()." << std::endl; + std::cerr << "BP5 Writer \"" << m_Name << "\" Destroyed without a prior Close()." + << std::endl; std::cerr << "This may result in corrupt output." << std::endl; } // close metadata index file @@ -1637,8 +1543,8 @@ void BP5Writer::DoClose(const int transportIndex) wait += Now() - wait_start; if (m_Comm.Rank() == 0 && m_Parameters.verbose > 0) { - std::cout << "Close waited " << wait.count() - << " seconds on async threads" << std::endl; + std::cout << "Close waited " << wait.count() << " seconds on async threads" + << std::endl; } m_Profiler.Stop("DC_WaitOnAsync2"); } @@ -1676,21 +1582,17 @@ void BP5Writer::FlushProfiler() auto transportTypesMD = m_FileMetadataManager.GetTransportsTypes(); auto transportProfilersMD = m_FileMetadataManager.GetTransportsProfilers(); - transportTypes.insert(transportTypes.end(), transportTypesMD.begin(), - transportTypesMD.end()); + transportTypes.insert(transportTypes.end(), transportTypesMD.begin(), transportTypesMD.end()); - transportProfilers.insert(transportProfilers.end(), - transportProfilersMD.begin(), + transportProfilers.insert(transportProfilers.end(), transportProfilersMD.begin(), transportProfilersMD.end()); // m_Profiler.WriteOut(transportTypes, transportProfilers); - const std::string lineJSON( - m_Profiler.GetRankProfilingJSON(transportTypes, transportProfilers) + - ",\n"); + const std::string lineJSON(m_Profiler.GetRankProfilingJSON(transportTypes, transportProfilers) + + ",\n"); - const std::vector profilingJSON( - m_Profiler.AggregateProfilingJSON(lineJSON)); + const std::vector profilingJSON(m_Profiler.AggregateProfilingJSON(lineJSON)); if (m_RankMPI == 0) { @@ -1703,15 +1605,14 @@ void BP5Writer::FlushProfiler() std::vector bpTargetNames = {m_Name}; if (fileTransportIdx > -1) { - profileFileName = - bpTargetNames[fileTransportIdx] + "/profiling.json"; + profileFileName = bpTargetNames[fileTransportIdx] + "/profiling.json"; } else { profileFileName = bpTargetNames[0] + "_profiling.json"; } - m_FileDrainer.AddOperationWrite( - profileFileName, profilingJSON.size(), profilingJSON.data()); + m_FileDrainer.AddOperationWrite(profileFileName, profilingJSON.size(), + profilingJSON.data()); } else { @@ -1721,16 +1622,14 @@ void BP5Writer::FlushProfiler() std::vector bpBaseNames = {m_Name}; if (fileTransportIdx > -1) { - profileFileName = - bpBaseNames[fileTransportIdx] + "/profiling.json"; + profileFileName = bpBaseNames[fileTransportIdx] + "/profiling.json"; } else { profileFileName = bpBaseNames[0] + "_profiling.json"; } profilingJSONStream.Open(profileFileName, Mode::Write); - profilingJSONStream.Write(profilingJSON.data(), - profilingJSON.size()); + profilingJSONStream.Write(profilingJSON.data(), profilingJSON.size()); profilingJSONStream.Close(); } } @@ -1806,12 +1705,10 @@ void BP5Writer::PutCommon(VariableBase &variable, const void *values, bool sync) // get a temporary span then fill with memselection now format::BufferV::BufferPos bp5span(0, 0, 0); - m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), - variable.m_Type, variable.m_ElementSize, - DimCount, Shape, Count, Start, nullptr, false, - &bp5span); - void *ptr = - m_BP5Serializer.GetPtr(bp5span.bufferIdx, bp5span.posInBuffer); + m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), variable.m_Type, + variable.m_ElementSize, DimCount, Shape, Count, Start, nullptr, + false, &bp5span); + void *ptr = m_BP5Serializer.GetPtr(bp5span.bufferIdx, bp5span.posInBuffer); if (!sourceRowMajor) { @@ -1819,12 +1716,11 @@ void BP5Writer::PutCommon(VariableBase &variable, const void *values, bool sync) std::reverse(MemoryCount.begin(), MemoryCount.end()); std::reverse(varCount.begin(), varCount.end()); } - helper::NdCopy((const char *)values, helper::CoreDims(ZeroDims), - MemoryCount, sourceRowMajor, false, (char *)ptr, - MemoryStart, varCount, sourceRowMajor, false, - (int)ObjSize, helper::CoreDims(), helper::CoreDims(), - helper::CoreDims(), helper::CoreDims(), - false /* safemode */, variable.m_MemSpace); + helper::NdCopy((const char *)values, helper::CoreDims(ZeroDims), MemoryCount, + sourceRowMajor, false, (char *)ptr, MemoryStart, varCount, sourceRowMajor, + false, (int)ObjSize, helper::CoreDims(), helper::CoreDims(), + helper::CoreDims(), helper::CoreDims(), false /* safemode */, + variable.m_MemSpace); } else { @@ -1832,51 +1728,46 @@ void BP5Writer::PutCommon(VariableBase &variable, const void *values, bool sync) { std::string &source = *(std::string *)values; void *p = &(source[0]); - m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), - variable.m_Type, variable.m_ElementSize, - DimCount, Shape, Count, Start, &p, sync, + m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), variable.m_Type, + variable.m_ElementSize, DimCount, Shape, Count, Start, &p, sync, nullptr); } else - m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), - variable.m_Type, variable.m_ElementSize, - DimCount, Shape, Count, Start, values, sync, - nullptr); + m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), variable.m_Type, + variable.m_ElementSize, DimCount, Shape, Count, Start, values, + sync, nullptr); } } -#define declare_type(T) \ - void BP5Writer::DoPut(Variable &variable, \ - typename Variable::Span &span, \ - const bool initialize, const T &value) \ - { \ - PERFSTUBS_SCOPED_TIMER("BP5Writer::Put"); \ - PutCommonSpan(variable, span, initialize, value); \ +#define declare_type(T) \ + void BP5Writer::DoPut(Variable &variable, typename Variable::Span &span, \ + const bool initialize, const T &value) \ + { \ + PERFSTUBS_SCOPED_TIMER("BP5Writer::Put"); \ + PutCommonSpan(variable, span, initialize, value); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type -#define declare_type(T) \ - void BP5Writer::DoPutSync(Variable &variable, const T *data) \ - { \ - PutCommon(variable, data, true); \ - } \ - void BP5Writer::DoPutDeferred(Variable &variable, const T *data) \ - { \ - PutCommon(variable, data, false); \ +#define declare_type(T) \ + void BP5Writer::DoPutSync(Variable &variable, const T *data) \ + { \ + PutCommon(variable, data, true); \ + } \ + void BP5Writer::DoPutDeferred(Variable &variable, const T *data) \ + { \ + PutCommon(variable, data, false); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type -#define declare_type(T, L) \ - T *BP5Writer::DoBufferData_##L(const int bufferIdx, \ - const size_t payloadPosition, \ - const size_t bufferID) noexcept \ - { \ - return reinterpret_cast( \ - m_BP5Serializer.GetPtr(bufferIdx, payloadPosition)); \ +#define declare_type(T, L) \ + T *BP5Writer::DoBufferData_##L(const int bufferIdx, const size_t payloadPosition, \ + const size_t bufferID) noexcept \ + { \ + return reinterpret_cast(m_BP5Serializer.GetPtr(bufferIdx, payloadPosition)); \ } ADIOS2_FOREACH_PRIMITVE_STDTYPE_2ARGS(declare_type) diff --git a/source/adios2/engine/bp5/BP5Writer.h b/source/adios2/engine/bp5/BP5Writer.h index 829138b292..7d6ad47a04 100644 --- a/source/adios2/engine/bp5/BP5Writer.h +++ b/source/adios2/engine/bp5/BP5Writer.h @@ -41,13 +41,11 @@ class BP5Writer : public BP5Engine, public core::Engine * @param openMode w (supported), r, a from OpenMode in ADIOSTypes.h * @param comm multi-process communicator */ - BP5Writer(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + BP5Writer(IO &io, const std::string &name, const Mode mode, helper::Comm comm); ~BP5Writer(); - StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode, const float timeoutSeconds = -1.0) final; size_t CurrentStep() const final; void PerformPuts() final; void PerformDataWrite() final; @@ -115,16 +113,15 @@ class BP5Writer : public BP5Engine, public core::Engine /** Notify the engine when a new attribute is defined or modified. Called * from IO.tcc */ - void NotifyEngineAttribute(std::string name, AttributeBase *Attr, - void *data) noexcept; + void NotifyEngineAttribute(std::string name, AttributeBase *Attr, void *data) noexcept; void EnterComputationBlock() noexcept; /** Inform about computation block through User->ADIOS->IO */ void ExitComputationBlock() noexcept; -#define declare_type(T) \ - void DoPut(Variable &variable, typename Variable::Span &span, \ - const bool initialize, const T &value) final; +#define declare_type(T) \ + void DoPut(Variable &variable, typename Variable::Span &span, const bool initialize, \ + const T &value) final; ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type @@ -133,8 +130,8 @@ class BP5Writer : public BP5Engine, public core::Engine void PutCommonSpan(Variable &variable, typename Variable::Span &span, const bool initialize, const T &value); -#define declare_type(T) \ - void DoPutSync(Variable &, const T *) final; \ +#define declare_type(T) \ + void DoPutSync(Variable &, const T *) final; \ void DoPutDeferred(Variable &, const T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) @@ -142,8 +139,8 @@ class BP5Writer : public BP5Engine, public core::Engine void PutCommon(VariableBase &variable, const void *data, bool sync); -#define declare_type(T, L) \ - T *DoBufferData_##L(const int bufferIdx, const size_t payloadPosition, \ +#define declare_type(T, L) \ + T *DoBufferData_##L(const int bufferIdx, const size_t payloadPosition, \ const size_t bufferID = 0) noexcept final; ADIOS2_FOREACH_PRIMITVE_STDTYPE_2ARGS(declare_type) @@ -162,8 +159,7 @@ class BP5Writer : public BP5Engine, public core::Engine * profilers*/ void WriteProfilingJSONFile(); - void WriteMetaMetadata( - const std::vector MetaMetaBlocks); + void WriteMetaMetadata(const std::vector MetaMetaBlocks); void WriteMetadataFileIndex(uint64_t MetaDataPos, uint64_t MetaDataSize); @@ -172,10 +168,8 @@ class BP5Writer : public BP5Engine, public core::Engine /** Write Data to disk, in an aggregator chain */ void WriteData(format::BufferV *Data); - void WriteData_EveryoneWrites(format::BufferV *Data, - bool SerializedWriters); - void WriteData_EveryoneWrites_Async(format::BufferV *Data, - bool SerializedWriters); + void WriteData_EveryoneWrites(format::BufferV *Data, bool SerializedWriters); + void WriteData_EveryoneWrites_Async(format::BufferV *Data, bool SerializedWriters); void WriteData_TwoLevelShm(format::BufferV *Data); void WriteData_TwoLevelShm_Async(format::BufferV *Data); @@ -238,8 +232,8 @@ class BP5Writer : public BP5Engine, public core::Engine std::vector> FlushPosSizeInfo; - void MakeHeader(std::vector &buffer, size_t &position, - const std::string fileType, const bool isActive); + void MakeHeader(std::vector &buffer, size_t &position, const std::string fileType, + const bool isActive); std::vector m_WriterSubfileMap; // rank => subfile index @@ -270,7 +264,7 @@ class BP5Writer : public BP5Engine, public core::Engine TimePoint m_EndStepEnd; TimePoint m_EngineStart; TimePoint m_BeginStepStart; - bool m_flagRush; // main thread flips this in Close, async thread watches it + bool m_flagRush; // main thread flips this in Close, async thread watches it bool m_InComputationBlock = false; // main thread flips this in Clos TimePoint m_ComputationBlockStart; /* block counter and length in seconds */ @@ -280,8 +274,7 @@ class BP5Writer : public BP5Engine, public core::Engine { size_t blockID; double length; // seconds - ComputationBlockInfo(const size_t id, const double len) - : blockID(id), length(len){}; + ComputationBlockInfo(const size_t id, const double len) : blockID(id), length(len){}; }; std::vector m_ComputationBlockTimes; @@ -308,9 +301,8 @@ class BP5Writer : public BP5Engine, public core::Engine // comm-free time within deadline in seconds double computationBlocksLength; std::vector expectedComputationBlocks; // a copy - std::vector - *currentComputationBlocks; // extended by main thread - size_t *currentComputationBlockID; // increased by main thread + std::vector *currentComputationBlocks; // extended by main thread + size_t *currentComputationBlockID; // increased by main thread shm::Spinlock *lock; // race condition over currentComp* variables }; @@ -330,23 +322,20 @@ class BP5Writer : public BP5Engine, public core::Engine static int AsyncWriteThread_EveryoneWrites(AsyncWriteInfo *info); static int AsyncWriteThread_TwoLevelShm(AsyncWriteInfo *info); static void AsyncWriteThread_TwoLevelShm_Aggregator(AsyncWriteInfo *info); - static void AsyncWriteThread_TwoLevelShm_SendDataToAggregator( - aggregator::MPIShmChain *a, format::BufferV *Data); + static void AsyncWriteThread_TwoLevelShm_SendDataToAggregator(aggregator::MPIShmChain *a, + format::BufferV *Data); /* write own data used by both EveryoneWrites and TwoLevelShm async threads */ - static void AsyncWriteOwnData(AsyncWriteInfo *info, - std::vector &DataVec, - const size_t totalsize, - const bool seekOnFirstWrite); + static void AsyncWriteOwnData(AsyncWriteInfo *info, std::vector &DataVec, + const size_t totalsize, const bool seekOnFirstWrite); enum class ComputationStatus { InComp, NotInComp_ExpectMore, NoMoreComp }; - static ComputationStatus IsInComputationBlock(AsyncWriteInfo *info, - size_t &compBlockIdx); + static ComputationStatus IsInComputationBlock(AsyncWriteInfo *info, size_t &compBlockIdx); void AsyncWriteDataCleanup(); void AsyncWriteDataCleanup_EveryoneWrites(); diff --git a/source/adios2/engine/bp5/BP5Writer.tcc b/source/adios2/engine/bp5/BP5Writer.tcc index 0a4bdec02d..8c9756a03b 100644 --- a/source/adios2/engine/bp5/BP5Writer.tcc +++ b/source/adios2/engine/bp5/BP5Writer.tcc @@ -19,8 +19,7 @@ namespace engine { template -void BP5Writer::PutCommonSpan(Variable &variable, - typename Variable::Span &span, +void BP5Writer::PutCommonSpan(Variable &variable, typename Variable::Span &span, const bool initialize, const T &value) { format::BufferV::BufferPos bp5span(0, 0, 0); @@ -55,16 +54,14 @@ void BP5Writer::PutCommonSpan(Variable &variable, if (std::is_same::value) { - m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), - variable.m_Type, variable.m_ElementSize, - DimCount, Shape, Count, Start, nullptr, false, - &bp5span); + m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), variable.m_Type, + variable.m_ElementSize, DimCount, Shape, Count, Start, nullptr, + false, &bp5span); } else - m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), - variable.m_Type, variable.m_ElementSize, - DimCount, Shape, Count, Start, nullptr, false, - &bp5span); + m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), variable.m_Type, + variable.m_ElementSize, DimCount, Shape, Count, Start, nullptr, + false, &bp5span); span.m_PayloadPosition = bp5span.posInBuffer; span.m_BufferIdx = bp5span.bufferIdx; @@ -74,8 +71,8 @@ void BP5Writer::PutCommonSpan(Variable &variable, if (initialize) { const size_t ElemCount = m_BP5Serializer.CalcSize(DimCount, Count); - T *itBegin = reinterpret_cast( - m_BP5Serializer.GetPtr(span.m_BufferIdx, span.m_PayloadPosition)); + T *itBegin = + reinterpret_cast(m_BP5Serializer.GetPtr(span.m_BufferIdx, span.m_PayloadPosition)); // TODO from BP4: does std::fill_n have a bug in gcc or due to // optimizations this is impossible due to memory alignment? This seg diff --git a/source/adios2/engine/bp5/BP5Writer_EveryoneWrites_Async.cpp b/source/adios2/engine/bp5/BP5Writer_EveryoneWrites_Async.cpp index a8f7827adb..b8daa58023 100644 --- a/source/adios2/engine/bp5/BP5Writer_EveryoneWrites_Async.cpp +++ b/source/adios2/engine/bp5/BP5Writer_EveryoneWrites_Async.cpp @@ -30,8 +30,8 @@ namespace engine using namespace adios2::format; -BP5Writer::ComputationStatus -BP5Writer::IsInComputationBlock(AsyncWriteInfo *info, size_t &compBlockIdx) +BP5Writer::ComputationStatus BP5Writer::IsInComputationBlock(AsyncWriteInfo *info, + size_t &compBlockIdx) { ComputationStatus compStatus = ComputationStatus::NotInComp_ExpectMore; size_t nExpectedBlocks = info->expectedComputationBlocks.size(); @@ -54,13 +54,11 @@ BP5Writer::IsInComputationBlock(AsyncWriteInfo *info, size_t &compBlockIdx) if (inComp) { while (compBlockIdx < nExpectedBlocks && - info->expectedComputationBlocks[compBlockIdx].blockID < - compBlockID) + info->expectedComputationBlocks[compBlockIdx].blockID < compBlockID) { ++compBlockIdx; } - if (info->expectedComputationBlocks[compBlockIdx].blockID > - compBlockID) + if (info->expectedComputationBlocks[compBlockIdx].blockID > compBlockID) { // the current computation block is a short one that was not // recorded @@ -75,10 +73,8 @@ BP5Writer::IsInComputationBlock(AsyncWriteInfo *info, size_t &compBlockIdx) return compStatus; } -void BP5Writer::AsyncWriteOwnData(AsyncWriteInfo *info, - std::vector &DataVec, - const size_t totalsize, - const bool seekOnFirstWrite) +void BP5Writer::AsyncWriteOwnData(AsyncWriteInfo *info, std::vector &DataVec, + const size_t totalsize, const bool seekOnFirstWrite) { /* local variables to track variables modified by main thread */ size_t compBlockIdx = 0; /* position in vector to get length */ @@ -102,8 +98,7 @@ void BP5Writer::AsyncWriteOwnData(AsyncWriteInfo *info, if (!doRush) { - ComputationStatus compStatus = - IsInComputationBlock(info, compBlockIdx); + ComputationStatus compStatus = IsInComputationBlock(info, compBlockIdx); /* Scheduling decisions: Cases: @@ -136,10 +131,8 @@ void BP5Writer::AsyncWriteOwnData(AsyncWriteInfo *info, if (doRush) { - auto vec = std::vector(DataVec.begin() + block, - DataVec.end()); - vec[0].iov_base = - (const char *)DataVec[block].iov_base + temp_offset; + auto vec = std::vector(DataVec.begin() + block, DataVec.end()); + vec[0].iov_base = (const char *)DataVec[block].iov_base + temp_offset; vec[0].iov_len = DataVec[block].iov_len - temp_offset; size_t pos = MaxSizeT; // <==> no seek inside WriteFileAt if (firstWrite) @@ -172,15 +165,13 @@ void BP5Writer::AsyncWriteOwnData(AsyncWriteInfo *info, if (firstWrite) { - info->tm->WriteFileAt((const char *)DataVec[block].iov_base + - temp_offset, - n, info->startPos); + info->tm->WriteFileAt((const char *)DataVec[block].iov_base + temp_offset, n, + info->startPos); firstWrite = false; } else { - info->tm->WriteFiles( - (const char *)DataVec[block].iov_base + temp_offset, n); + info->tm->WriteFiles((const char *)DataVec[block].iov_base + temp_offset, n); } /* Have we processed the entire block or staying with it? */ @@ -224,34 +215,29 @@ int BP5Writer::AsyncWriteThread_EveryoneWrites(AsyncWriteInfo *info) return 1; }; -void BP5Writer::WriteData_EveryoneWrites_Async(format::BufferV *Data, - bool SerializedWriters) +void BP5Writer::WriteData_EveryoneWrites_Async(format::BufferV *Data, bool SerializedWriters) { - const aggregator::MPIChain *a = - dynamic_cast(m_Aggregator); + const aggregator::MPIChain *a = dynamic_cast(m_Aggregator); // new step writing starts at offset m_DataPos on aggregator // others will wait for the position to arrive from the rank below if (a->m_Comm.Rank() > 0) { - a->m_Comm.Recv( - &m_DataPos, 1, a->m_Comm.Rank() - 1, 0, - "Chain token in BP5Writer::WriteData_EveryoneWrites_Async"); + a->m_Comm.Recv(&m_DataPos, 1, a->m_Comm.Rank() - 1, 0, + "Chain token in BP5Writer::WriteData_EveryoneWrites_Async"); } // align to PAGE_SIZE - m_DataPos += - helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); + m_DataPos += helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); m_StartDataPos = m_DataPos; if (a->m_Comm.Rank() < a->m_Comm.Size() - 1) { uint64_t nextWriterPos = m_DataPos + Data->Size(); - a->m_Comm.Isend( - &nextWriterPos, 1, a->m_Comm.Rank() + 1, 0, - "Chain token in BP5Writer::WriteData_EveryoneWrites_Async"); + a->m_Comm.Isend(&nextWriterPos, 1, a->m_Comm.Rank() + 1, 0, + "Chain token in BP5Writer::WriteData_EveryoneWrites_Async"); } m_DataPos += Data->Size(); @@ -266,8 +252,7 @@ void BP5Writer::WriteData_EveryoneWrites_Async(format::BufferV *Data, m_AsyncWriteInfo->comm_chain = a->m_Comm.GroupByShm(); m_AsyncWriteInfo->rank_chain = m_AsyncWriteInfo->comm_chain.Rank(); m_AsyncWriteInfo->nproc_chain = m_AsyncWriteInfo->comm_chain.Size(); - m_AsyncWriteInfo->tokenChain = - new shm::TokenChain(&m_AsyncWriteInfo->comm_chain); + m_AsyncWriteInfo->tokenChain = new shm::TokenChain(&m_AsyncWriteInfo->comm_chain); } else { @@ -285,8 +270,7 @@ void BP5Writer::WriteData_EveryoneWrites_Async(format::BufferV *Data, m_AsyncWriteInfo->flagRush = &m_flagRush; m_AsyncWriteInfo->lock = &m_AsyncWriteLock; - if (m_ComputationBlocksLength > 0.0 && - m_Parameters.AsyncWrite == (int)AsyncWrite::Guided) + if (m_ComputationBlocksLength > 0.0 && m_Parameters.AsyncWrite == (int)AsyncWrite::Guided) { m_AsyncWriteInfo->inComputationBlock = &m_InComputationBlock; m_AsyncWriteInfo->computationBlocksLength = m_ComputationBlocksLength; @@ -294,10 +278,8 @@ void BP5Writer::WriteData_EveryoneWrites_Async(format::BufferV *Data, { m_AsyncWriteInfo->deadline = m_ComputationBlocksLength; } - m_AsyncWriteInfo->expectedComputationBlocks = - m_ComputationBlockTimes; // copy! - m_AsyncWriteInfo->currentComputationBlocks = - &m_ComputationBlockTimes; // ptr! + m_AsyncWriteInfo->expectedComputationBlocks = m_ComputationBlockTimes; // copy! + m_AsyncWriteInfo->currentComputationBlocks = &m_ComputationBlockTimes; // ptr! m_AsyncWriteInfo->currentComputationBlockID = &m_ComputationBlockID; /* Clear current block tracker now so that async thread does not get @@ -318,8 +300,8 @@ void BP5Writer::WriteData_EveryoneWrites_Async(format::BufferV *Data, m_AsyncWriteInfo->currentComputationBlockID = nullptr; } - m_WriteFuture = std::async( - std::launch::async, AsyncWriteThread_EveryoneWrites, m_AsyncWriteInfo); + m_WriteFuture = + std::async(std::launch::async, AsyncWriteThread_EveryoneWrites, m_AsyncWriteInfo); // At this point modifying Data in main thread is prohibited !!! @@ -335,9 +317,8 @@ void BP5Writer::WriteData_EveryoneWrites_Async(format::BufferV *Data, } if (a->m_Comm.Rank() == 0) { - a->m_Comm.Recv( - &m_DataPos, 1, a->m_Comm.Size() - 1, 0, - "Chain token in BP5Writer::WriteData_EveryoneWrites_Async"); + a->m_Comm.Recv(&m_DataPos, 1, a->m_Comm.Size() - 1, 0, + "Chain token in BP5Writer::WriteData_EveryoneWrites_Async"); } } } diff --git a/source/adios2/engine/bp5/BP5Writer_TwoLevelShm.cpp b/source/adios2/engine/bp5/BP5Writer_TwoLevelShm.cpp index 9af5652101..36f833312a 100644 --- a/source/adios2/engine/bp5/BP5Writer_TwoLevelShm.cpp +++ b/source/adios2/engine/bp5/BP5Writer_TwoLevelShm.cpp @@ -32,16 +32,14 @@ using namespace adios2::format; void BP5Writer::WriteData_TwoLevelShm(format::BufferV *Data) { - aggregator::MPIShmChain *a = - dynamic_cast(m_Aggregator); + aggregator::MPIShmChain *a = dynamic_cast(m_Aggregator); // new step writing starts at offset m_DataPos on master aggregator // other aggregators to the same file will need to wait for the position // to arrive from the rank below // align to PAGE_SIZE (only valid on master aggregator at this point) - m_DataPos += - helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); + m_DataPos += helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); // Each aggregator needs to know the total size they write // This calculation is valid on aggregators only @@ -64,8 +62,7 @@ void BP5Writer::WriteData_TwoLevelShm(format::BufferV *Data) { alignment_size = m_Parameters.DirectIOAlignOffset; } - a->CreateShm(static_cast(maxSize), m_Parameters.MaxShmSize, - alignment_size); + a->CreateShm(static_cast(maxSize), m_Parameters.MaxShmSize, alignment_size); } shm::TokenChain tokenChain(&a->m_Comm); @@ -80,25 +77,22 @@ void BP5Writer::WriteData_TwoLevelShm(format::BufferV *Data) &m_DataPos, 1, a->m_AggregatorChainComm.Rank() - 1, 0, "AggregatorChain token in BP5Writer::WriteData_TwoLevelShm"); // align to PAGE_SIZE - m_DataPos += helper::PaddingToAlignOffset(m_DataPos, - m_Parameters.StripeSize); + m_DataPos += helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); } m_StartDataPos = m_DataPos; // metadata needs this info - if (a->m_AggregatorChainComm.Rank() < - a->m_AggregatorChainComm.Size() - 1) + if (a->m_AggregatorChainComm.Rank() < a->m_AggregatorChainComm.Size() - 1) { uint64_t nextWriterPos = m_DataPos + myTotalSize; - a->m_AggregatorChainComm.Isend( - &nextWriterPos, 1, a->m_AggregatorChainComm.Rank() + 1, 0, - "Chain token in BP5Writer::WriteData"); + a->m_AggregatorChainComm.Isend(&nextWriterPos, 1, a->m_AggregatorChainComm.Rank() + 1, + 0, "Chain token in BP5Writer::WriteData"); } else if (a->m_AggregatorChainComm.Size() > 1) { // send back final position from last aggregator in file to master // aggregator uint64_t nextWriterPos = m_DataPos + myTotalSize; - a->m_AggregatorChainComm.Isend( - &nextWriterPos, 1, 0, 0, "Chain token in BP5Writer::WriteData"); + a->m_AggregatorChainComm.Isend(&nextWriterPos, 1, 0, 0, + "Chain token in BP5Writer::WriteData"); } /*std::cout << "Rank " << m_Comm.Rank() @@ -122,12 +116,10 @@ void BP5Writer::WriteData_TwoLevelShm(format::BufferV *Data) // Master aggregator needs to know where the last writing ended by the // last aggregator in the chain, so that it can start from the correct // position at the next output step - if (a->m_AggregatorChainComm.Size() > 1 && - !a->m_AggregatorChainComm.Rank()) + if (a->m_AggregatorChainComm.Size() > 1 && !a->m_AggregatorChainComm.Rank()) { - a->m_AggregatorChainComm.Recv( - &m_DataPos, 1, a->m_AggregatorChainComm.Size() - 1, 0, - "Chain token in BP5Writer::WriteData"); + a->m_AggregatorChainComm.Recv(&m_DataPos, 1, a->m_AggregatorChainComm.Size() - 1, 0, + "Chain token in BP5Writer::WriteData"); } } else @@ -156,8 +148,7 @@ void BP5Writer::WriteMyOwnData(format::BufferV *Data) { std::vector DataVec = Data->DataVec(); m_StartDataPos = m_DataPos; - m_FileDataManager.WriteFileAt(DataVec.data(), DataVec.size(), - m_StartDataPos); + m_FileDataManager.WriteFileAt(DataVec.data(), DataVec.size(), m_StartDataPos); m_DataPos += Data->Size(); } @@ -190,8 +181,7 @@ void BP5Writer::SendDataToAggregator(format::BufferV *Data) between the two segments. */ - aggregator::MPIShmChain *a = - dynamic_cast(m_Aggregator); + aggregator::MPIShmChain *a = dynamic_cast(m_Aggregator); std::vector DataVec = Data->DataVec(); size_t nBlocks = DataVec.size(); @@ -261,8 +251,7 @@ void BP5Writer::SendDataToAggregator(format::BufferV *Data) void BP5Writer::WriteOthersData(size_t TotalSize) { /* Only an Aggregator calls this function */ - aggregator::MPIShmChain *a = - dynamic_cast(m_Aggregator); + aggregator::MPIShmChain *a = dynamic_cast(m_Aggregator); size_t wrote = 0; while (wrote < TotalSize) diff --git a/source/adios2/engine/bp5/BP5Writer_TwoLevelShm_Async.cpp b/source/adios2/engine/bp5/BP5Writer_TwoLevelShm_Async.cpp index 2074222074..7bd14caadd 100644 --- a/source/adios2/engine/bp5/BP5Writer_TwoLevelShm_Async.cpp +++ b/source/adios2/engine/bp5/BP5Writer_TwoLevelShm_Async.cpp @@ -36,8 +36,7 @@ using namespace adios2::format; */ void BP5Writer::AsyncWriteThread_TwoLevelShm_Aggregator(AsyncWriteInfo *info) { - aggregator::MPIShmChain *a = - dynamic_cast(info->aggregator); + aggregator::MPIShmChain *a = dynamic_cast(info->aggregator); uint64_t totalSize = info->totalSize; /* Write own data first */ @@ -71,8 +70,8 @@ void BP5Writer::AsyncWriteThread_TwoLevelShm_Aggregator(AsyncWriteInfo *info) tokenChain in caller ensures only one process (per aggregator chain) is running this function at a time */ -void BP5Writer::AsyncWriteThread_TwoLevelShm_SendDataToAggregator( - aggregator::MPIShmChain *a, format::BufferV *Data) +void BP5Writer::AsyncWriteThread_TwoLevelShm_SendDataToAggregator(aggregator::MPIShmChain *a, + format::BufferV *Data) { /* In a loop, copy the local data into the shared memory, alternating between the two segments. @@ -138,8 +137,7 @@ int BP5Writer::AsyncWriteThread_TwoLevelShm(AsyncWriteInfo *info) Seconds ts = Now() - info->tstart; // std::cout << "ASYNC rank " << info->rank_global // << " starts at: " << ts.count() << std::endl; - aggregator::MPIShmChain *a = - dynamic_cast(info->aggregator); + aggregator::MPIShmChain *a = dynamic_cast(info->aggregator); if (a->m_IsAggregator) { // Send token to first non-aggregator to start filling shm @@ -169,16 +167,14 @@ int BP5Writer::AsyncWriteThread_TwoLevelShm(AsyncWriteInfo *info) void BP5Writer::WriteData_TwoLevelShm_Async(format::BufferV *Data) { - aggregator::MPIShmChain *a = - dynamic_cast(m_Aggregator); + aggregator::MPIShmChain *a = dynamic_cast(m_Aggregator); // new step writing starts at offset m_DataPos on master aggregator // other aggregators to the same file will need to wait for the position // to arrive from the rank below // align to PAGE_SIZE (only valid on master aggregator at this point) - m_DataPos += - helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); + m_DataPos += helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); // Each aggregator needs to know the total size they write // This calculation is valid on aggregators only @@ -201,8 +197,7 @@ void BP5Writer::WriteData_TwoLevelShm_Async(format::BufferV *Data) { alignment_size = m_Parameters.DirectIOAlignOffset; } - a->CreateShm(static_cast(maxSize), m_Parameters.MaxShmSize, - alignment_size); + a->CreateShm(static_cast(maxSize), m_Parameters.MaxShmSize, alignment_size); } if (a->m_IsAggregator) @@ -215,25 +210,22 @@ void BP5Writer::WriteData_TwoLevelShm_Async(format::BufferV *Data) &m_DataPos, 1, a->m_AggregatorChainComm.Rank() - 1, 0, "AggregatorChain token in BP5Writer::WriteData_TwoLevelShm"); // align to PAGE_SIZE - m_DataPos += helper::PaddingToAlignOffset(m_DataPos, - m_Parameters.StripeSize); + m_DataPos += helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); } m_StartDataPos = m_DataPos; // metadata needs this info - if (a->m_AggregatorChainComm.Rank() < - a->m_AggregatorChainComm.Size() - 1) + if (a->m_AggregatorChainComm.Rank() < a->m_AggregatorChainComm.Size() - 1) { uint64_t nextWriterPos = m_DataPos + myTotalSize; - a->m_AggregatorChainComm.Isend( - &nextWriterPos, 1, a->m_AggregatorChainComm.Rank() + 1, 0, - "Chain token in BP5Writer::WriteData"); + a->m_AggregatorChainComm.Isend(&nextWriterPos, 1, a->m_AggregatorChainComm.Rank() + 1, + 0, "Chain token in BP5Writer::WriteData"); } else if (a->m_AggregatorChainComm.Size() > 1) { // send back final position from last aggregator in file to master // aggregator uint64_t nextWriterPos = m_DataPos + myTotalSize; - a->m_AggregatorChainComm.Isend( - &nextWriterPos, 1, 0, 0, "Chain token in BP5Writer::WriteData"); + a->m_AggregatorChainComm.Isend(&nextWriterPos, 1, 0, 0, + "Chain token in BP5Writer::WriteData"); } // Master aggregator needs to know where the last writing ended by the @@ -243,9 +235,8 @@ void BP5Writer::WriteData_TwoLevelShm_Async(format::BufferV *Data) { if (a->m_AggregatorChainComm.Size() > 1) { - a->m_AggregatorChainComm.Recv( - &m_DataPos, 1, a->m_AggregatorChainComm.Size() - 1, 0, - "Chain token in BP5Writer::WriteData"); + a->m_AggregatorChainComm.Recv(&m_DataPos, 1, a->m_AggregatorChainComm.Size() - 1, 0, + "Chain token in BP5Writer::WriteData"); } else { @@ -295,8 +286,7 @@ void BP5Writer::WriteData_TwoLevelShm_Async(format::BufferV *Data) m_AsyncWriteInfo->totalSize = myTotalSize; m_AsyncWriteInfo->deadline = m_ExpectedTimeBetweenSteps.count(); - if (m_ComputationBlocksLength > 0.0 && - m_Parameters.AsyncWrite == (int)AsyncWrite::Guided) + if (m_ComputationBlocksLength > 0.0 && m_Parameters.AsyncWrite == (int)AsyncWrite::Guided) { m_AsyncWriteInfo->inComputationBlock = &m_InComputationBlock; m_AsyncWriteInfo->computationBlocksLength = m_ComputationBlocksLength; @@ -304,10 +294,8 @@ void BP5Writer::WriteData_TwoLevelShm_Async(format::BufferV *Data) { m_AsyncWriteInfo->deadline = m_ComputationBlocksLength; } - m_AsyncWriteInfo->expectedComputationBlocks = - m_ComputationBlockTimes; // copy! - m_AsyncWriteInfo->currentComputationBlocks = - &m_ComputationBlockTimes; // ptr! + m_AsyncWriteInfo->expectedComputationBlocks = m_ComputationBlockTimes; // copy! + m_AsyncWriteInfo->currentComputationBlocks = &m_ComputationBlockTimes; // ptr! m_AsyncWriteInfo->currentComputationBlockID = &m_ComputationBlockID; /* Clear current block tracker now so that async thread does not get @@ -328,8 +316,7 @@ void BP5Writer::WriteData_TwoLevelShm_Async(format::BufferV *Data) m_AsyncWriteInfo->currentComputationBlockID = nullptr; } - m_WriteFuture = std::async(std::launch::async, AsyncWriteThread_TwoLevelShm, - m_AsyncWriteInfo); + m_WriteFuture = std::async(std::launch::async, AsyncWriteThread_TwoLevelShm, m_AsyncWriteInfo); /* At this point it is prohibited in the main thread - to modify Data, which will be deleted in the async thread any tiume diff --git a/source/adios2/engine/daos/BP5Writer_TwoLevelShm.cpp b/source/adios2/engine/daos/BP5Writer_TwoLevelShm.cpp index 9ef11dd74b..e3c23cef26 100644 --- a/source/adios2/engine/daos/BP5Writer_TwoLevelShm.cpp +++ b/source/adios2/engine/daos/BP5Writer_TwoLevelShm.cpp @@ -32,16 +32,14 @@ using namespace adios2::format; void DaosWriter::WriteData_TwoLevelShm(format::BufferV *Data) { - aggregator::MPIShmChain *a = - dynamic_cast(m_Aggregator); + aggregator::MPIShmChain *a = dynamic_cast(m_Aggregator); // new step writing starts at offset m_DataPos on master aggregator // other aggregators to the same file will need to wait for the position // to arrive from the rank below // align to PAGE_SIZE (only valid on master aggregator at this point) - m_DataPos += - helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); + m_DataPos += helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); // Each aggregator needs to know the total size they write // This calculation is valid on aggregators only @@ -64,8 +62,7 @@ void DaosWriter::WriteData_TwoLevelShm(format::BufferV *Data) { alignment_size = m_Parameters.DirectIOAlignOffset; } - a->CreateShm(static_cast(maxSize), m_Parameters.MaxShmSize, - alignment_size); + a->CreateShm(static_cast(maxSize), m_Parameters.MaxShmSize, alignment_size); } shm::TokenChain tokenChain(&a->m_Comm); @@ -80,26 +77,22 @@ void DaosWriter::WriteData_TwoLevelShm(format::BufferV *Data) &m_DataPos, 1, a->m_AggregatorChainComm.Rank() - 1, 0, "AggregatorChain token in DaosWriter::WriteData_TwoLevelShm"); // align to PAGE_SIZE - m_DataPos += helper::PaddingToAlignOffset(m_DataPos, - m_Parameters.StripeSize); + m_DataPos += helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); } m_StartDataPos = m_DataPos; // metadata needs this info - if (a->m_AggregatorChainComm.Rank() < - a->m_AggregatorChainComm.Size() - 1) + if (a->m_AggregatorChainComm.Rank() < a->m_AggregatorChainComm.Size() - 1) { uint64_t nextWriterPos = m_DataPos + myTotalSize; - a->m_AggregatorChainComm.Isend( - &nextWriterPos, 1, a->m_AggregatorChainComm.Rank() + 1, 0, - "Chain token in DaosWriter::WriteData"); + a->m_AggregatorChainComm.Isend(&nextWriterPos, 1, a->m_AggregatorChainComm.Rank() + 1, + 0, "Chain token in DaosWriter::WriteData"); } else if (a->m_AggregatorChainComm.Size() > 1) { // send back final position from last aggregator in file to master // aggregator uint64_t nextWriterPos = m_DataPos + myTotalSize; - a->m_AggregatorChainComm.Isend( - &nextWriterPos, 1, 0, 0, - "Chain token in DaosWriter::WriteData"); + a->m_AggregatorChainComm.Isend(&nextWriterPos, 1, 0, 0, + "Chain token in DaosWriter::WriteData"); } /*std::cout << "Rank " << m_Comm.Rank() @@ -123,12 +116,10 @@ void DaosWriter::WriteData_TwoLevelShm(format::BufferV *Data) // Master aggregator needs to know where the last writing ended by the // last aggregator in the chain, so that it can start from the correct // position at the next output step - if (a->m_AggregatorChainComm.Size() > 1 && - !a->m_AggregatorChainComm.Rank()) + if (a->m_AggregatorChainComm.Size() > 1 && !a->m_AggregatorChainComm.Rank()) { - a->m_AggregatorChainComm.Recv( - &m_DataPos, 1, a->m_AggregatorChainComm.Size() - 1, 0, - "Chain token in DaosWriter::WriteData"); + a->m_AggregatorChainComm.Recv(&m_DataPos, 1, a->m_AggregatorChainComm.Size() - 1, 0, + "Chain token in DaosWriter::WriteData"); } } else @@ -157,8 +148,7 @@ void DaosWriter::WriteMyOwnData(format::BufferV *Data) { std::vector DataVec = Data->DataVec(); m_StartDataPos = m_DataPos; - m_FileDataManager.WriteFileAt(DataVec.data(), DataVec.size(), - m_StartDataPos); + m_FileDataManager.WriteFileAt(DataVec.data(), DataVec.size(), m_StartDataPos); m_DataPos += Data->Size(); } @@ -191,8 +181,7 @@ void DaosWriter::SendDataToAggregator(format::BufferV *Data) between the two segments. */ - aggregator::MPIShmChain *a = - dynamic_cast(m_Aggregator); + aggregator::MPIShmChain *a = dynamic_cast(m_Aggregator); std::vector DataVec = Data->DataVec(); size_t nBlocks = DataVec.size(); @@ -262,8 +251,7 @@ void DaosWriter::SendDataToAggregator(format::BufferV *Data) void DaosWriter::WriteOthersData(size_t TotalSize) { /* Only an Aggregator calls this function */ - aggregator::MPIShmChain *a = - dynamic_cast(m_Aggregator); + aggregator::MPIShmChain *a = dynamic_cast(m_Aggregator); size_t wrote = 0; while (wrote < TotalSize) diff --git a/source/adios2/engine/daos/DaosEngine.cpp b/source/adios2/engine/daos/DaosEngine.cpp index af71d1205b..068d49769e 100644 --- a/source/adios2/engine/daos/DaosEngine.cpp +++ b/source/adios2/engine/daos/DaosEngine.cpp @@ -23,8 +23,8 @@ namespace core namespace engine { -std::vector DaosEngine::GetBPMetadataFileNames( - const std::vector &names) const noexcept +std::vector +DaosEngine::GetBPMetadataFileNames(const std::vector &names) const noexcept { std::vector metadataFileNames; metadataFileNames.reserve(names.size()); @@ -35,8 +35,8 @@ std::vector DaosEngine::GetBPMetadataFileNames( return metadataFileNames; } -std::vector DaosEngine::GetBPMetaMetadataFileNames( - const std::vector &names) const noexcept +std::vector +DaosEngine::GetBPMetaMetadataFileNames(const std::vector &names) const noexcept { std::vector metaMetadataFileNames; metaMetadataFileNames.reserve(names.size()); @@ -47,19 +47,16 @@ std::vector DaosEngine::GetBPMetaMetadataFileNames( return metaMetadataFileNames; } -std::string -DaosEngine::GetBPMetadataFileName(const std::string &name) const noexcept +std::string DaosEngine::GetBPMetadataFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); const size_t index = 0; // global metadata file is generated by rank 0 /* the name of the metadata file is "md.0" */ - const std::string bpMetaDataRankName(bpName + PathSeparator + "md." + - std::to_string(index)); + const std::string bpMetaDataRankName(bpName + PathSeparator + "md." + std::to_string(index)); return bpMetaDataRankName; } -std::string -DaosEngine::GetBPMetaMetadataFileName(const std::string &name) const noexcept +std::string DaosEngine::GetBPMetaMetadataFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); const size_t index = 0; // global metadata file is generated by rank 0 @@ -69,8 +66,8 @@ DaosEngine::GetBPMetaMetadataFileName(const std::string &name) const noexcept return bpMetaMetaDataRankName; } -std::vector DaosEngine::GetBPMetadataIndexFileNames( - const std::vector &names) const noexcept +std::vector +DaosEngine::GetBPMetadataIndexFileNames(const std::vector &names) const noexcept { std::vector metadataIndexFileNames; metadataIndexFileNames.reserve(names.size()); @@ -81,18 +78,16 @@ std::vector DaosEngine::GetBPMetadataIndexFileNames( return metadataIndexFileNames; } -std::string -DaosEngine::GetBPMetadataIndexFileName(const std::string &name) const noexcept +std::string DaosEngine::GetBPMetadataIndexFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); /* the name of the metadata index file is "md.idx" */ - const std::string bpMetaDataIndexRankName(bpName + PathSeparator + - "md.idx"); + const std::string bpMetaDataIndexRankName(bpName + PathSeparator + "md.idx"); return bpMetaDataIndexRankName; } -std::vector DaosEngine::GetBPVersionFileNames( - const std::vector &names) const noexcept +std::vector +DaosEngine::GetBPVersionFileNames(const std::vector &names) const noexcept { std::vector versionFileNames; versionFileNames.reserve(names.size()); @@ -103,8 +98,7 @@ std::vector DaosEngine::GetBPVersionFileNames( return versionFileNames; } -std::string -DaosEngine::GetBPVersionFileName(const std::string &name) const noexcept +std::string DaosEngine::GetBPVersionFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); /* the name of the version file is ".bpversion" */ @@ -112,8 +106,7 @@ DaosEngine::GetBPVersionFileName(const std::string &name) const noexcept return bpVersionFileName; } -std::string DaosEngine::GetBPSubStreamName(const std::string &name, - const size_t id, +std::string DaosEngine::GetBPSubStreamName(const std::string &name, const size_t id, const bool hasSubFiles, const bool isReader) const noexcept { @@ -124,14 +117,12 @@ std::string DaosEngine::GetBPSubStreamName(const std::string &name, const std::string bpName = helper::RemoveTrailingSlash(name); /* the name of a data file starts with "data." */ - const std::string bpRankName(bpName + PathSeparator + "data." + - std::to_string(id)); + const std::string bpRankName(bpName + PathSeparator + "data." + std::to_string(id)); return bpRankName; } -std::vector -DaosEngine::GetBPSubStreamNames(const std::vector &names, - size_t subFileIndex) const noexcept +std::vector DaosEngine::GetBPSubStreamNames(const std::vector &names, + size_t subFileIndex) const noexcept { std::vector bpNames; bpNames.reserve(names.size()); @@ -152,16 +143,14 @@ void DaosEngine::ParseParams(IO &io, struct DAOSParams &Params) params_lowercase[key] = value; } - auto lf_SetBoolParameter = [&](const std::string key, bool ¶meter, - bool def) { + auto lf_SetBoolParameter = [&](const std::string key, bool ¶meter, bool def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; if (itKey != params_lowercase.end()) { std::string value = itKey->second; - std::transform(value.begin(), value.end(), value.begin(), - ::tolower); + std::transform(value.begin(), value.end(), value.begin(), ::tolower); if (value == "yes" || value == "true" || value == "on") { parameter = true; @@ -172,41 +161,37 @@ void DaosEngine::ParseParams(IO &io, struct DAOSParams &Params) } else { - helper::Throw( - "Engine", "DaosEngine", "ParseParams", - "Unknown BP5 Boolean parameter '" + value + "'"); + helper::Throw("Engine", "DaosEngine", "ParseParams", + "Unknown BP5 Boolean parameter '" + value + + "'"); } } }; - auto lf_SetFloatParameter = [&](const std::string key, float ¶meter, - float def) { + auto lf_SetFloatParameter = [&](const std::string key, float ¶meter, float def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; if (itKey != params_lowercase.end()) { std::string value = itKey->second; - parameter = - helper::StringTo(value, " in Parameter key=" + key); + parameter = helper::StringTo(value, " in Parameter key=" + key); } }; - auto lf_SetSizeBytesParameter = [&](const std::string key, - size_t ¶meter, size_t def) { + auto lf_SetSizeBytesParameter = [&](const std::string key, size_t ¶meter, size_t def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; if (itKey != params_lowercase.end()) { std::string value = itKey->second; - parameter = helper::StringToByteUnits( - value, "for Parameter key=" + key + "in call to Open"); + parameter = + helper::StringToByteUnits(value, "for Parameter key=" + key + "in call to Open"); } }; - auto lf_SetIntParameter = [&](const std::string key, int ¶meter, - int def) { + auto lf_SetIntParameter = [&](const std::string key, int ¶meter, int def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; @@ -218,8 +203,8 @@ void DaosEngine::ParseParams(IO &io, struct DAOSParams &Params) return false; }; - auto lf_SetUIntParameter = [&](const std::string key, - unsigned int ¶meter, unsigned int def) { + auto lf_SetUIntParameter = [&](const std::string key, unsigned int ¶meter, + unsigned int def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; @@ -236,8 +221,8 @@ void DaosEngine::ParseParams(IO &io, struct DAOSParams &Params) return false; }; - auto lf_SetStringParameter = [&](const std::string key, - std::string ¶meter, const char *def) { + auto lf_SetStringParameter = [&](const std::string key, std::string ¶meter, + const char *def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; @@ -249,16 +234,14 @@ void DaosEngine::ParseParams(IO &io, struct DAOSParams &Params) return false; }; - auto lf_SetBufferVTypeParameter = [&](const std::string key, int ¶meter, - int def) { + auto lf_SetBufferVTypeParameter = [&](const std::string key, int ¶meter, int def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; if (itKey != params_lowercase.end()) { std::string value = itKey->second; - std::transform(value.begin(), value.end(), value.begin(), - ::tolower); + std::transform(value.begin(), value.end(), value.begin(), ::tolower); if (value == "malloc") { parameter = (int)BufferVType::MallocVType; @@ -269,24 +252,22 @@ void DaosEngine::ParseParams(IO &io, struct DAOSParams &Params) } else { - helper::Throw( - "Engine", "DaosEngine", "ParseParams", - "Unknown BP5 BufferVType parameter \"" + value + - "\" (must be \"malloc\" or \"chunk\""); + helper::Throw("Engine", "DaosEngine", "ParseParams", + "Unknown BP5 BufferVType parameter \"" + + value + + "\" (must be \"malloc\" or \"chunk\""); } } }; - auto lf_SetAggregationTypeParameter = [&](const std::string key, - int ¶meter, int def) { + auto lf_SetAggregationTypeParameter = [&](const std::string key, int ¶meter, int def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; if (itKey != params_lowercase.end()) { std::string value = itKey->second; - std::transform(value.begin(), value.end(), value.begin(), - ::tolower); + std::transform(value.begin(), value.end(), value.begin(), ::tolower); if (value == "everyonewrites" || value == "auto") { parameter = (int)AggregationType::EveryoneWrites; @@ -310,18 +291,15 @@ void DaosEngine::ParseParams(IO &io, struct DAOSParams &Params) } }; - auto lf_SetAsyncWriteParameter = [&](const std::string key, int ¶meter, - int def) { + auto lf_SetAsyncWriteParameter = [&](const std::string key, int ¶meter, int def) { const std::string lkey = helper::LowerCase(std::string(key)); auto itKey = params_lowercase.find(lkey); parameter = def; if (itKey != params_lowercase.end()) { std::string value = itKey->second; - std::transform(value.begin(), value.end(), value.begin(), - ::tolower); - if (value == "guided" || value == "auto" || value == "on" || - value == "true") + std::transform(value.begin(), value.end(), value.begin(), ::tolower); + if (value == "guided" || value == "auto" || value == "on" || value == "true") { parameter = (int)AsyncWrite::Guided; } @@ -345,7 +323,7 @@ void DaosEngine::ParseParams(IO &io, struct DAOSParams &Params) } }; -#define get_params(Param, Type, Typedecl, Default) \ +#define get_params(Param, Type, Typedecl, Default) \ lf_Set##Type##Parameter(#Param, Params.Param, Default); DAOS_FOREACH_PARAMETER_TYPE_4ARGS(get_params); @@ -355,18 +333,17 @@ void DaosEngine::ParseParams(IO &io, struct DAOSParams &Params) { std::cout << "---------------- " << io.m_EngineType << " engine parameters --------------\n"; -#define print_params(Param, Type, Typedecl, Default) \ - lf_Set##Type##Parameter(#Param, Params.Param, Default); \ - if (!m_RankMPI) \ - { \ - std::cout << " " << std::string(#Param) << " = " << Params.Param \ - << " default = " << Default << std::endl; \ +#define print_params(Param, Type, Typedecl, Default) \ + lf_Set##Type##Parameter(#Param, Params.Param, Default); \ + if (!m_RankMPI) \ + { \ + std::cout << " " << std::string(#Param) << " = " << Params.Param \ + << " default = " << Default << std::endl; \ } DAOS_FOREACH_PARAMETER_TYPE_4ARGS(print_params); #undef print_params - std::cout << "-----------------------------------------------------" - << std::endl; + std::cout << "-----------------------------------------------------" << std::endl; } }; diff --git a/source/adios2/engine/daos/DaosEngine.h b/source/adios2/engine/daos/DaosEngine.h index ffe9bd0bcb..47404ffd38 100644 --- a/source/adios2/engine/daos/DaosEngine.h +++ b/source/adios2/engine/daos/DaosEngine.h @@ -68,22 +68,19 @@ class DaosEngine WriterMapRecord = 'w', }; - std::vector - GetBPSubStreamNames(const std::vector &names, - size_t subFileIndex) const noexcept; + std::vector GetBPSubStreamNames(const std::vector &names, + size_t subFileIndex) const noexcept; - std::vector GetBPMetadataFileNames( - const std::vector &names) const noexcept; - std::vector GetBPMetaMetadataFileNames( - const std::vector &names) const noexcept; + std::vector + GetBPMetadataFileNames(const std::vector &names) const noexcept; + std::vector + GetBPMetaMetadataFileNames(const std::vector &names) const noexcept; std::string GetBPMetadataFileName(const std::string &name) const noexcept; - std::string - GetBPMetaMetadataFileName(const std::string &name) const noexcept; - std::vector GetBPMetadataIndexFileNames( - const std::vector &names) const noexcept; + std::string GetBPMetaMetadataFileName(const std::string &name) const noexcept; + std::vector + GetBPMetadataIndexFileNames(const std::vector &names) const noexcept; - std::string - GetBPMetadataIndexFileName(const std::string &name) const noexcept; + std::string GetBPMetadataIndexFileName(const std::string &name) const noexcept; std::string GetBPSubStreamName(const std::string &name, const size_t id, const bool hasSubFiles = true, @@ -125,39 +122,38 @@ class DaosEngine */ const size_t DefaultStatsBlockSize = 1125899906842624ULL; -#define DAOS_FOREACH_PARAMETER_TYPE_4ARGS(MACRO) \ - MACRO(OpenTimeoutSecs, Float, float, -1.0f) \ - MACRO(BeginStepPollingFrequencySecs, Float, float, 1.0f) \ - MACRO(StreamReader, Bool, bool, false) \ - MACRO(BurstBufferDrain, Bool, bool, true) \ - MACRO(BurstBufferPath, String, std::string, "") \ - MACRO(NodeLocal, Bool, bool, false) \ - MACRO(verbose, Int, int, 0) \ - MACRO(CollectiveMetadata, Bool, bool, true) \ - MACRO(NumAggregators, UInt, unsigned int, 0) \ - MACRO(AggregatorRatio, UInt, unsigned int, 0) \ - MACRO(NumSubFiles, UInt, unsigned int, 0) \ - MACRO(StripeSize, UInt, unsigned int, 4096) \ - MACRO(DirectIO, Bool, bool, false) \ - MACRO(DirectIOAlignOffset, UInt, unsigned int, 512) \ - MACRO(DirectIOAlignBuffer, UInt, unsigned int, 0) \ - MACRO(AggregationType, AggregationType, int, \ - (int)AggregationType::TwoLevelShm) \ - MACRO(AsyncOpen, Bool, bool, true) \ - MACRO(AsyncWrite, AsyncWrite, int, (int)AsyncWrite::Sync) \ - MACRO(GrowthFactor, Float, float, DefaultBufferGrowthFactor) \ - MACRO(InitialBufferSize, SizeBytes, size_t, DefaultInitialBufferSize) \ - MACRO(MinDeferredSize, SizeBytes, size_t, DefaultMinDeferredSize) \ - MACRO(BufferChunkSize, SizeBytes, size_t, DefaultBufferChunkSize) \ - MACRO(MaxShmSize, SizeBytes, size_t, DefaultMaxShmSize) \ - MACRO(BufferVType, BufferVType, int, (int)BufferVType::ChunkVType) \ - MACRO(AppendAfterSteps, Int, int, INT_MAX) \ - MACRO(SelectSteps, String, std::string, "") \ - MACRO(ReaderShortCircuitReads, Bool, bool, false) \ - MACRO(StatsLevel, UInt, unsigned int, 1) \ - MACRO(StatsBlockSize, SizeBytes, size_t, DefaultStatsBlockSize) \ - MACRO(Threads, UInt, unsigned int, 0) \ - MACRO(UseOneTimeAttributes, Bool, bool, true) \ +#define DAOS_FOREACH_PARAMETER_TYPE_4ARGS(MACRO) \ + MACRO(OpenTimeoutSecs, Float, float, -1.0f) \ + MACRO(BeginStepPollingFrequencySecs, Float, float, 1.0f) \ + MACRO(StreamReader, Bool, bool, false) \ + MACRO(BurstBufferDrain, Bool, bool, true) \ + MACRO(BurstBufferPath, String, std::string, "") \ + MACRO(NodeLocal, Bool, bool, false) \ + MACRO(verbose, Int, int, 0) \ + MACRO(CollectiveMetadata, Bool, bool, true) \ + MACRO(NumAggregators, UInt, unsigned int, 0) \ + MACRO(AggregatorRatio, UInt, unsigned int, 0) \ + MACRO(NumSubFiles, UInt, unsigned int, 0) \ + MACRO(StripeSize, UInt, unsigned int, 4096) \ + MACRO(DirectIO, Bool, bool, false) \ + MACRO(DirectIOAlignOffset, UInt, unsigned int, 512) \ + MACRO(DirectIOAlignBuffer, UInt, unsigned int, 0) \ + MACRO(AggregationType, AggregationType, int, (int)AggregationType::TwoLevelShm) \ + MACRO(AsyncOpen, Bool, bool, true) \ + MACRO(AsyncWrite, AsyncWrite, int, (int)AsyncWrite::Sync) \ + MACRO(GrowthFactor, Float, float, DefaultBufferGrowthFactor) \ + MACRO(InitialBufferSize, SizeBytes, size_t, DefaultInitialBufferSize) \ + MACRO(MinDeferredSize, SizeBytes, size_t, DefaultMinDeferredSize) \ + MACRO(BufferChunkSize, SizeBytes, size_t, DefaultBufferChunkSize) \ + MACRO(MaxShmSize, SizeBytes, size_t, DefaultMaxShmSize) \ + MACRO(BufferVType, BufferVType, int, (int)BufferVType::ChunkVType) \ + MACRO(AppendAfterSteps, Int, int, INT_MAX) \ + MACRO(SelectSteps, String, std::string, "") \ + MACRO(ReaderShortCircuitReads, Bool, bool, false) \ + MACRO(StatsLevel, UInt, unsigned int, 1) \ + MACRO(StatsBlockSize, SizeBytes, size_t, DefaultStatsBlockSize) \ + MACRO(Threads, UInt, unsigned int, 0) \ + MACRO(UseOneTimeAttributes, Bool, bool, true) \ MACRO(MaxOpenFilesAtOnce, UInt, unsigned int, UINT_MAX) struct DAOSParams diff --git a/source/adios2/engine/daos/DaosReader.cpp b/source/adios2/engine/daos/DaosReader.cpp index a182f87d51..1410d93832 100644 --- a/source/adios2/engine/daos/DaosReader.cpp +++ b/source/adios2/engine/daos/DaosReader.cpp @@ -29,12 +29,10 @@ namespace core namespace engine { -DaosReader::DaosReader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) -: Engine("DaosReader", io, name, mode, std::move(comm)), - m_MDFileManager(io, m_Comm), m_DataFileManager(io, m_Comm), - m_MDIndexFileManager(io, m_Comm), m_FileMetaMetadataManager(io, m_Comm), - m_ActiveFlagFileManager(io, m_Comm) +DaosReader::DaosReader(IO &io, const std::string &name, const Mode mode, helper::Comm comm) +: Engine("DaosReader", io, name, mode, std::move(comm)), m_MDFileManager(io, m_Comm), + m_DataFileManager(io, m_Comm), m_MDIndexFileManager(io, m_Comm), + m_FileMetaMetadataManager(io, m_Comm), m_ActiveFlagFileManager(io, m_Comm) { PERFSTUBS_SCOPED_TIMER("DaosReader::Open"); Init(); @@ -63,8 +61,7 @@ void DaosReader::InstallMetadataForTimestep(size_t Step) { size_t pgstart = m_MetadataIndexTable[Step][0]; size_t Position = pgstart + sizeof(uint64_t); // skip total data size - const uint64_t WriterCount = - m_WriterMap[m_WriterMapIndex[Step]].WriterCount; + const uint64_t WriterCount = m_WriterMap[m_WriterMapIndex[Step]].WriterCount; size_t MDPosition = Position + 2 * sizeof(uint64_t) * WriterCount; for (size_t WriterRank = 0; WriterRank < WriterCount; WriterRank++) { @@ -81,13 +78,11 @@ void DaosReader::InstallMetadataForTimestep(size_t Step) // Query size of a writer rank's metadata sprintf(key, "step%d-rank%d", Step, WriterRank); - std::cout << __FILE__ << "::" << __func__ << "(), step: " << Step - << std::endl; + std::cout << __FILE__ << "::" << __func__ << "(), step: " << Step << std::endl; std::cout << "key = " << key << std::endl; rc = daos_kv_get(oh, DAOS_TX_NONE, 0, key, &ThisMDSize, NULL, NULL); ASSERT(rc == 0, "daos_kv_get() failed to get size with %d", rc); - std::cout << "WriterRank = " << WriterRank - << ", ThisMDSize = " << ThisMDSize << std::endl; + std::cout << "WriterRank = " << WriterRank << ", ThisMDSize = " << ThisMDSize << std::endl; // Allocate memory ThisMD = new char[ThisMDSize]; @@ -108,8 +103,7 @@ void DaosReader::InstallMetadataForTimestep(size_t Step) if (m_OpenMode == Mode::ReadRandomAccess) { - m_BP5Deserializer->InstallMetaData(ThisMD, ThisMDSize, WriterRank, - Step); + m_BP5Deserializer->InstallMetaData(ThisMD, ThisMDSize, WriterRank, Step); } else { @@ -137,9 +131,8 @@ StepStatus DaosReader::BeginStep(StepMode mode, const float timeoutSeconds) if (m_OpenMode == Mode::ReadRandomAccess) { - helper::Throw( - "Engine", "DaosReader", "BeginStep", - "BeginStep called in random access mode"); + helper::Throw("Engine", "DaosReader", "BeginStep", + "BeginStep called in random access mode"); } if (m_BetweenStepPairs) { @@ -199,17 +192,15 @@ StepStatus DaosReader::BeginStep(StepMode mode, const float timeoutSeconds) // i++; // } - m_BP5Deserializer->SetupForStep( - m_CurrentStep, - m_WriterMap[m_WriterMapIndex[m_CurrentStep]].WriterCount); + m_BP5Deserializer->SetupForStep(m_CurrentStep, + m_WriterMap[m_WriterMapIndex[m_CurrentStep]].WriterCount); /* Remove all existing variables from previous steps It seems easier than trying to update them */ // m_IO.RemoveAllVariables(); InstallMetadataForTimestep(m_CurrentStep); - m_IO.ResetVariablesStepSelection(false, - "in call to BP5 Reader BeginStep"); + m_IO.ResetVariablesStepSelection(false, "in call to BP5 Reader BeginStep"); // caches attributes for each step // if a variable name is a prefix @@ -231,42 +222,39 @@ void DaosReader::EndStep() } if (!m_BetweenStepPairs) { - helper::Throw( - "Engine", "DaosReader", "EndStep", - "EndStep() is called without a successful BeginStep()"); + helper::Throw("Engine", "DaosReader", "EndStep", + "EndStep() is called without a successful BeginStep()"); } m_BetweenStepPairs = false; PERFSTUBS_SCOPED_TIMER("DaosReader::EndStep"); PerformGets(); } -std::pair -DaosReader::ReadData(adios2::transportman::TransportMan &FileManager, - const size_t maxOpenFiles, const size_t WriterRank, - const size_t Timestep, const size_t StartOffset, - const size_t Length, char *Destination) +std::pair DaosReader::ReadData(adios2::transportman::TransportMan &FileManager, + const size_t maxOpenFiles, const size_t WriterRank, + const size_t Timestep, const size_t StartOffset, + const size_t Length, char *Destination) { /* * Warning: this function is called by multiple threads */ size_t FlushCount = m_MetadataIndexTable[Timestep][2]; size_t DataPosPos = m_MetadataIndexTable[Timestep][3]; - size_t SubfileNum = static_cast( - m_WriterMap[m_WriterMapIndex[Timestep]].RankToSubfile[WriterRank]); + size_t SubfileNum = + static_cast(m_WriterMap[m_WriterMapIndex[Timestep]].RankToSubfile[WriterRank]); // check if subfile is already opened TP startSubfile = NOW(); if (FileManager.m_Transports.count(SubfileNum) == 0) { - const std::string subFileName = GetBPSubStreamName( - m_Name, SubfileNum, m_Minifooter.HasSubFiles, true); + const std::string subFileName = + GetBPSubStreamName(m_Name, SubfileNum, m_Minifooter.HasSubFiles, true); if (FileManager.m_Transports.size() >= maxOpenFiles) { auto m = FileManager.m_Transports.begin(); FileManager.CloseFiles((int)m->first); } - FileManager.OpenFileID(subFileName, SubfileNum, Mode::Read, - m_IO.m_TransportsParameters[0], + FileManager.OpenFileID(subFileName, SubfileNum, Mode::Read, m_IO.m_TransportsParameters[0], /*{{"transport", "File"}},*/ false); } TP endSubfile = NOW(); @@ -276,24 +264,20 @@ DaosReader::ReadData(adios2::transportman::TransportMan &FileManager, as if all the flushes were in a single contiguous block in file. */ TP startRead = NOW(); - size_t InfoStartPos = - DataPosPos + (WriterRank * (2 * FlushCount + 1) * sizeof(uint64_t)); + size_t InfoStartPos = DataPosPos + (WriterRank * (2 * FlushCount + 1) * sizeof(uint64_t)); size_t SumDataSize = 0; // count in contiguous space for (size_t flush = 0; flush < FlushCount; flush++) { - size_t ThisDataPos = - helper::ReadValue(m_MetadataIndex.m_Buffer, InfoStartPos, - m_Minifooter.IsLittleEndian); - size_t ThisDataSize = - helper::ReadValue(m_MetadataIndex.m_Buffer, InfoStartPos, - m_Minifooter.IsLittleEndian); + size_t ThisDataPos = helper::ReadValue(m_MetadataIndex.m_Buffer, InfoStartPos, + m_Minifooter.IsLittleEndian); + size_t ThisDataSize = helper::ReadValue(m_MetadataIndex.m_Buffer, InfoStartPos, + m_Minifooter.IsLittleEndian); if (StartOffset < SumDataSize + ThisDataSize) { // discount offsets of skipped flushes size_t Offset = StartOffset - SumDataSize; - FileManager.ReadFile(Destination, Length, ThisDataPos + Offset, - SubfileNum); + FileManager.ReadFile(Destination, Length, ThisDataPos + Offset, SubfileNum); TP endRead = NOW(); double timeRead = DURATION(startRead, endRead); return std::make_pair(timeSubfile, timeRead); @@ -301,8 +285,8 @@ DaosReader::ReadData(adios2::transportman::TransportMan &FileManager, SumDataSize += ThisDataSize; } - size_t ThisDataPos = helper::ReadValue( - m_MetadataIndex.m_Buffer, InfoStartPos, m_Minifooter.IsLittleEndian); + size_t ThisDataPos = helper::ReadValue(m_MetadataIndex.m_Buffer, InfoStartPos, + m_Minifooter.IsLittleEndian); size_t Offset = StartOffset - SumDataSize; FileManager.ReadFile(Destination, Length, ThisDataPos + Offset, SubfileNum); @@ -313,13 +297,10 @@ DaosReader::ReadData(adios2::transportman::TransportMan &FileManager, void DaosReader::PerformGets() { - auto lf_CompareReqSubfile = - [&](adios2::format::BP5Deserializer::ReadRequest &r1, - adios2::format::BP5Deserializer::ReadRequest &r2) -> bool { - return (m_WriterMap[m_WriterMapIndex[r1.Timestep]] - .RankToSubfile[r1.WriterRank] < - m_WriterMap[m_WriterMapIndex[r2.Timestep]] - .RankToSubfile[r2.WriterRank]); + auto lf_CompareReqSubfile = [&](adios2::format::BP5Deserializer::ReadRequest &r1, + adios2::format::BP5Deserializer::ReadRequest &r2) -> bool { + return (m_WriterMap[m_WriterMapIndex[r1.Timestep]].RankToSubfile[r1.WriterRank] < + m_WriterMap[m_WriterMapIndex[r2.Timestep]].RankToSubfile[r2.WriterRank]); }; // TP start = NOW(); @@ -327,8 +308,7 @@ void DaosReader::PerformGets() size_t maxReadSize; // TP startGenerate = NOW(); - auto ReadRequests = - m_BP5Deserializer->GenerateReadRequests(false, &maxReadSize); + auto ReadRequests = m_BP5Deserializer->GenerateReadRequests(false, &maxReadSize); size_t nRequest = ReadRequests.size(); // TP endGenerate = NOW(); // double generateTime = DURATION(startGenerate, endGenerate); @@ -347,8 +327,8 @@ void DaosReader::PerformGets() return reqidx; }; - auto lf_Reader = [&](const int FileManagerID, const size_t maxOpenFiles) - -> std::tuple { + auto lf_Reader = [&](const int FileManagerID, + const size_t maxOpenFiles) -> std::tuple { double copyTotal = 0.0; double readTotal = 0.0; double subfileTotal = 0.0; @@ -368,9 +348,8 @@ void DaosReader::PerformGets() Req.DestinationAddr = buf.data(); } std::pair t = - ReadData(fileManagers[FileManagerID], maxOpenFiles, - Req.WriterRank, Req.Timestep, Req.StartOffset, - Req.ReadLength, Req.DestinationAddr); + ReadData(fileManagers[FileManagerID], maxOpenFiles, Req.WriterRank, Req.Timestep, + Req.StartOffset, Req.ReadLength, Req.DestinationAddr); TP startCopy = NOW(); m_BP5Deserializer->FinalizeGet(Req, false); @@ -388,25 +367,21 @@ void DaosReader::PerformGets() if (m_Threads > 1 && nRequest > 1) { // TP startSort = NOW(); - std::sort(ReadRequests.begin(), ReadRequests.end(), - lf_CompareReqSubfile); + std::sort(ReadRequests.begin(), ReadRequests.end(), lf_CompareReqSubfile); // TP endSort = NOW(); // sortTime = DURATION(startSort, endSort); size_t nThreads = (m_Threads < nRequest ? m_Threads : nRequest); size_t maxOpenFiles = helper::SetWithinLimit( - (size_t)m_Parameters.MaxOpenFilesAtOnce / nThreads, (size_t)1, - MaxSizeT); + (size_t)m_Parameters.MaxOpenFilesAtOnce / nThreads, (size_t)1, MaxSizeT); - std::vector>> - futures(nThreads - 1); + std::vector>> futures(nThreads - 1); // launch Threads-1 threads to process subsets of requests, // then main thread process the last subset for (size_t tid = 0; tid < nThreads - 1; ++tid) { - futures[tid] = std::async(std::launch::async, lf_Reader, tid + 1, - maxOpenFiles); + futures[tid] = std::async(std::launch::async, lf_Reader, tid + 1, maxOpenFiles); } // main thread runs last subset of reads /*auto tMain = */ lf_Reader(0, maxOpenFiles); @@ -440,8 +415,8 @@ void DaosReader::PerformGets() } else { - size_t maxOpenFiles = helper::SetWithinLimit( - (size_t)m_Parameters.MaxOpenFilesAtOnce, (size_t)1, MaxSizeT); + size_t maxOpenFiles = + helper::SetWithinLimit((size_t)m_Parameters.MaxOpenFilesAtOnce, (size_t)1, MaxSizeT); std::vector buf(maxReadSize); for (auto &Req : ReadRequests) { @@ -449,9 +424,8 @@ void DaosReader::PerformGets() { Req.DestinationAddr = buf.data(); } - ReadData(m_DataFileManager, maxOpenFiles, Req.WriterRank, - Req.Timestep, Req.StartOffset, Req.ReadLength, - Req.DestinationAddr); + ReadData(m_DataFileManager, maxOpenFiles, Req.WriterRank, Req.Timestep, Req.StartOffset, + Req.ReadLength, Req.DestinationAddr); m_BP5Deserializer->FinalizeGet(Req, false); } } @@ -475,11 +449,10 @@ void DaosReader::Init() { if ((m_OpenMode != Mode::Read) && (m_OpenMode != Mode::ReadRandomAccess)) { - helper::Throw( - "Engine", "DaosReader", "Init", - "BPFileReader only supports OpenMode::Read or " - "OpenMode::ReadRandomAccess from" + - m_Name); + helper::Throw("Engine", "DaosReader", "Init", + "BPFileReader only supports OpenMode::Read or " + "OpenMode::ReadRandomAccess from" + + m_Name); } // if IO was involved in reading before this flag may be true now @@ -526,14 +499,12 @@ void DaosReader::InitParameters() m_Threads = m_Parameters.Threads; if (m_Threads == 0) { - helper::Comm m_NodeComm = - m_Comm.GroupByShm("creating per-node comm at BP5 Open(read)"); + helper::Comm m_NodeComm = m_Comm.GroupByShm("creating per-node comm at BP5 Open(read)"); unsigned int NodeSize = static_cast(m_NodeComm.Size()); unsigned int NodeThreadSize = helper::NumHardwareThreadsPerNode(); if (NodeThreadSize > 0) { - m_Threads = - helper::SetWithinLimit(NodeThreadSize / NodeSize, 1U, 16U); + m_Threads = helper::SetWithinLimit(NodeThreadSize / NodeSize, 1U, 16U); } else { @@ -546,8 +517,8 @@ void DaosReader::InitParameters() fileManagers.push_back(m_DataFileManager); for (unsigned int i = 0; i < m_Threads - 1; ++i) { - fileManagers.push_back(transportman::TransportMan( - transportman::TransportMan(m_IO, singleComm))); + fileManagers.push_back( + transportman::TransportMan(transportman::TransportMan(m_IO, singleComm))); } size_t limit = helper::RaiseLimitNoFile(); @@ -557,8 +528,7 @@ void DaosReader::InitParameters() } } -bool DaosReader::SleepOrQuit(const TimePoint &timeoutInstant, - const Seconds &pollSeconds) +bool DaosReader::SleepOrQuit(const TimePoint &timeoutInstant, const Seconds &pollSeconds) { auto now = Now(); if (now >= timeoutInstant) @@ -577,8 +547,7 @@ bool DaosReader::SleepOrQuit(const TimePoint &timeoutInstant, size_t DaosReader::OpenWithTimeout(transportman::TransportMan &tm, const std::vector &fileNames, - const TimePoint &timeoutInstant, - const Seconds &pollSeconds, + const TimePoint &timeoutInstant, const Seconds &pollSeconds, std::string &lasterrmsg /*INOUT*/) { size_t flag = 1; // 0 = OK, opened file, 1 = timeout, 2 = error @@ -587,17 +556,14 @@ size_t DaosReader::OpenWithTimeout(transportman::TransportMan &tm, try { errno = 0; - const bool profile = - false; // m_BP4Deserializer.m_Profiler.m_IsActive; - tm.OpenFiles(fileNames, adios2::Mode::Read, - m_IO.m_TransportsParameters, profile); + const bool profile = false; // m_BP4Deserializer.m_Profiler.m_IsActive; + tm.OpenFiles(fileNames, adios2::Mode::Read, m_IO.m_TransportsParameters, profile); flag = 0; // found file break; } catch (std::ios_base::failure &e) { - lasterrmsg = - std::string("errno=" + std::to_string(errno) + ": " + e.what()); + lasterrmsg = std::string("errno=" + std::to_string(errno) + ": " + e.what()); if (errno == ENOENT) { flag = 1; // timeout @@ -612,8 +578,7 @@ size_t DaosReader::OpenWithTimeout(transportman::TransportMan &tm, return flag; } -void DaosReader::OpenFiles(TimePoint &timeoutInstant, - const Seconds &pollSeconds, +void DaosReader::OpenFiles(TimePoint &timeoutInstant, const Seconds &pollSeconds, const Seconds &timeoutSeconds) { /* Poll */ @@ -624,8 +589,8 @@ void DaosReader::OpenFiles(TimePoint &timeoutInstant, /* Open the metadata index table */ const std::string metadataIndexFile(GetBPMetadataIndexFileName(m_Name)); - flag = OpenWithTimeout(m_MDIndexFileManager, {metadataIndexFile}, - timeoutInstant, pollSeconds, lasterrmsg); + flag = OpenWithTimeout(m_MDIndexFileManager, {metadataIndexFile}, timeoutInstant, + pollSeconds, lasterrmsg); if (flag == 0) { /* Open the metadata file */ @@ -641,8 +606,8 @@ void DaosReader::OpenFiles(TimePoint &timeoutInstant, timeoutInstant += Seconds(5.0); } - flag = OpenWithTimeout(m_MDFileManager, {metadataFile}, - timeoutInstant, pollSeconds, lasterrmsg); + flag = OpenWithTimeout(m_MDFileManager, {metadataFile}, timeoutInstant, pollSeconds, + lasterrmsg); if (flag != 0) { /* Close the metadata index table */ @@ -651,8 +616,7 @@ void DaosReader::OpenFiles(TimePoint &timeoutInstant, else { /* Open the metametadata file */ - const std::string metametadataFile( - GetBPMetaMetadataFileName(m_Name)); + const std::string metametadataFile(GetBPMetaMetadataFileName(m_Name)); /* We found md.idx. If we don't find md.0 immediately we should * wait a little bit hoping for the file system to catch up. @@ -664,9 +628,8 @@ void DaosReader::OpenFiles(TimePoint &timeoutInstant, timeoutInstant += Seconds(5.0); } - flag = OpenWithTimeout(m_FileMetaMetadataManager, - {metametadataFile}, timeoutInstant, - pollSeconds, lasterrmsg); + flag = OpenWithTimeout(m_FileMetaMetadataManager, {metametadataFile}, + timeoutInstant, pollSeconds, lasterrmsg); if (flag != 0) { /* Close the metametadata index table */ @@ -682,15 +645,14 @@ void DaosReader::OpenFiles(TimePoint &timeoutInstant, { if (m_Comm.Rank() == 0 && !lasterrmsg.empty()) { - helper::Throw( - "Engine", "DaosReader", "OpenFiles", - "File " + m_Name + " cannot be opened: " + lasterrmsg); + helper::Throw("Engine", "DaosReader", "OpenFiles", + "File " + m_Name + + " cannot be opened: " + lasterrmsg); } else { - helper::Throw( - "Engine", "DaosReader", "OpenFiles", - "File " + m_Name + " cannot be opened"); + helper::Throw("Engine", "DaosReader", "OpenFiles", + "File " + m_Name + " cannot be opened"); } } else if (flag == 1) @@ -700,8 +662,7 @@ void DaosReader::OpenFiles(TimePoint &timeoutInstant, helper::Throw( "Engine", "DaosReader", "OpenFiles", "File " + m_Name + " could not be found within the " + - std::to_string(timeoutSeconds.count()) + - "s timeout: " + lasterrmsg); + std::to_string(timeoutSeconds.count()) + "s timeout: " + lasterrmsg); } else { @@ -717,20 +678,17 @@ void DaosReader::OpenFiles(TimePoint &timeoutInstant, */ } -MinVarInfo *DaosReader::MinBlocksInfo(const VariableBase &Var, - const size_t Step) const +MinVarInfo *DaosReader::MinBlocksInfo(const VariableBase &Var, const size_t Step) const { return m_BP5Deserializer->MinBlocksInfo(Var, Step); } -bool DaosReader::VarShape(const VariableBase &Var, const size_t Step, - Dims &Shape) const +bool DaosReader::VarShape(const VariableBase &Var, const size_t Step, Dims &Shape) const { return m_BP5Deserializer->VarShape(Var, Step, Shape); } -bool DaosReader::VariableMinMax(const VariableBase &Var, const size_t Step, - MinMaxStruct &MinMax) +bool DaosReader::VariableMinMax(const VariableBase &Var, const size_t Step, MinMaxStruct &MinMax) { return m_BP5Deserializer->VariableMinMax(Var, Step, MinMax); } @@ -761,8 +719,7 @@ void DaosReader::InitDAOS() /** connect to the just created DAOS pool */ rc = daos_pool_connect(pool_label, DSS_PSETID, // DAOS_PC_EX , - DAOS_PC_RW /* read write access */, - &poh /* returned pool handle */, + DAOS_PC_RW /* read write access */, &poh /* returned pool handle */, NULL /* returned pool info */, NULL /* event */); ASSERT(rc == 0, "pool connect failed with %d", rc); } @@ -812,10 +769,10 @@ void DaosReader::InstallMetaMetaData(format::BufferSTL buffer) { format::BP5Base::MetaMetaInfoBlock MMI; - MMI.MetaMetaIDLen = helper::ReadValue( - buffer.m_Buffer, Position, m_Minifooter.IsLittleEndian); - MMI.MetaMetaInfoLen = helper::ReadValue( - buffer.m_Buffer, Position, m_Minifooter.IsLittleEndian); + MMI.MetaMetaIDLen = + helper::ReadValue(buffer.m_Buffer, Position, m_Minifooter.IsLittleEndian); + MMI.MetaMetaInfoLen = + helper::ReadValue(buffer.m_Buffer, Position, m_Minifooter.IsLittleEndian); MMI.MetaMetaID = buffer.Data() + Position; MMI.MetaMetaInfo = buffer.Data() + Position + MMI.MetaMetaIDLen; m_BP5Deserializer->InstallMetaMetaData(MMI); @@ -824,8 +781,7 @@ void DaosReader::InstallMetaMetaData(format::BufferSTL buffer) m_MetaMetaDataFileAlreadyProcessedSize = Position; } -void DaosReader::UpdateBuffer(const TimePoint &timeoutInstant, - const Seconds &pollSeconds, +void DaosReader::UpdateBuffer(const TimePoint &timeoutInstant, const Seconds &pollSeconds, const Seconds &timeoutSeconds) { size_t newIdxSize = 0; @@ -833,14 +789,12 @@ void DaosReader::UpdateBuffer(const TimePoint &timeoutInstant, if (m_Comm.Rank() == 0) { /* Read metadata index table into memory */ - const size_t metadataIndexFileSize = - m_MDIndexFileManager.GetFileSize(0); + const size_t metadataIndexFileSize = m_MDIndexFileManager.GetFileSize(0); newIdxSize = metadataIndexFileSize - m_MDIndexFileAlreadyReadSize; if (metadataIndexFileSize > m_MDIndexFileAlreadyReadSize) { m_MetadataIndex.m_Buffer.resize(newIdxSize); - m_MDIndexFileManager.ReadFile(m_MetadataIndex.m_Buffer.data(), - newIdxSize, + m_MDIndexFileManager.ReadFile(m_MetadataIndex.m_Buffer.data(), newIdxSize, m_MDIndexFileAlreadyReadSize); } else @@ -874,9 +828,8 @@ void DaosReader::UpdateBuffer(const TimePoint &timeoutInstant, // create the serializer object if (!m_BP5Deserializer) { - m_BP5Deserializer = new format::BP5Deserializer( - m_WriterIsRowMajor, m_ReaderIsRowMajor, - (m_OpenMode == Mode::ReadRandomAccess)); + m_BP5Deserializer = new format::BP5Deserializer(m_WriterIsRowMajor, m_ReaderIsRowMajor, + (m_OpenMode == Mode::ReadRandomAccess)); m_BP5Deserializer->m_Engine = this; } } @@ -945,19 +898,15 @@ void DaosReader::UpdateBuffer(const TimePoint &timeoutInstant, /* Read new meta-meta-data into memory and append to existing one in * memory */ - const size_t metametadataFileSize = - m_FileMetaMetadataManager.GetFileSize(0); + const size_t metametadataFileSize = m_FileMetaMetadataManager.GetFileSize(0); if (metametadataFileSize > m_MetaMetaDataFileAlreadyReadSize) { - const size_t newMMDSize = - metametadataFileSize - m_MetaMetaDataFileAlreadyReadSize; - m_MetaMetadata.Resize(metametadataFileSize, - "(re)allocating meta-meta-data buffer, " - "in call to DaosReader Open"); - m_FileMetaMetadataManager.ReadFile( - m_MetaMetadata.m_Buffer.data() + - m_MetaMetaDataFileAlreadyReadSize, - newMMDSize, m_MetaMetaDataFileAlreadyReadSize); + const size_t newMMDSize = metametadataFileSize - m_MetaMetaDataFileAlreadyReadSize; + m_MetaMetadata.Resize(metametadataFileSize, "(re)allocating meta-meta-data buffer, " + "in call to DaosReader Open"); + m_FileMetaMetadataManager.ReadFile(m_MetaMetadata.m_Buffer.data() + + m_MetaMetaDataFileAlreadyReadSize, + newMMDSize, m_MetaMetaDataFileAlreadyReadSize); m_MetaMetaDataFileAlreadyReadSize += newMMDSize; } } @@ -974,16 +923,15 @@ void DaosReader::UpdateBuffer(const TimePoint &timeoutInstant, { for (size_t Step = 0; Step < m_MetadataIndexTable.size(); Step++) { - m_BP5Deserializer->SetupForStep( - Step, m_WriterMap[m_WriterMapIndex[Step]].WriterCount); + m_BP5Deserializer->SetupForStep(Step, + m_WriterMap[m_WriterMapIndex[Step]].WriterCount); InstallMetadataForTimestep(Step); } } } } -size_t DaosReader::ParseMetadataIndex(format::BufferSTL &bufferSTL, - const size_t absoluteStartPos, +size_t DaosReader::ParseMetadataIndex(format::BufferSTL &bufferSTL, const size_t absoluteStartPos, const bool hasHeader) { const auto &buffer = bufferSTL.m_Buffer; @@ -1002,12 +950,11 @@ size_t DaosReader::ParseMetadataIndex(format::BufferSTL &bufferSTL, #ifndef ADIOS2_HAVE_ENDIAN_REVERSE if (helper::IsLittleEndian() != m_Minifooter.IsLittleEndian) { - helper::Throw( - "Engine", "DaosReader", "ParseMetadataIndex", - "reader found BigEndian bp file, " - "this version of ADIOS2 wasn't compiled " - "with the cmake flag -DADIOS2_USE_Endian_Reverse=ON " - "explicitly, in call to Open"); + helper::Throw("Engine", "DaosReader", "ParseMetadataIndex", + "reader found BigEndian bp file, " + "this version of ADIOS2 wasn't compiled " + "with the cmake flag -DADIOS2_USE_Endian_Reverse=ON " + "explicitly, in call to Open"); } #endif @@ -1016,39 +963,38 @@ size_t DaosReader::ParseMetadataIndex(format::BufferSTL &bufferSTL, // BP version position = m_BPVersionPosition; - m_Minifooter.Version = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + m_Minifooter.Version = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); if (m_Minifooter.Version != 5) { - helper::Throw( - "Engine", "DaosReader", "ParseMetadataIndex", - "ADIOS2 BP5 Engine only supports bp format " - "version 5, found " + - std::to_string(m_Minifooter.Version) + " version"); + helper::Throw("Engine", "DaosReader", "ParseMetadataIndex", + "ADIOS2 BP5 Engine only supports bp format " + "version 5, found " + + std::to_string(m_Minifooter.Version) + + " version"); } // BP minor version, unused position = m_BPMinorVersionPosition; - const uint8_t minorversion = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const uint8_t minorversion = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); if (minorversion != m_BP5MinorVersion) { - helper::Throw( - "Engine", "DaosReader", "ParseMetadataIndex", - "Current ADIOS2 BP5 Engine only supports version 5." + - std::to_string(m_BP5MinorVersion) + ", found 5." + - std::to_string(minorversion) + " version"); + helper::Throw("Engine", "DaosReader", "ParseMetadataIndex", + "Current ADIOS2 BP5 Engine only supports version 5." + + std::to_string(m_BP5MinorVersion) + ", found 5." + + std::to_string(minorversion) + " version"); } // Writer active flag position = m_ActiveFlagPosition; - const char activeChar = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const char activeChar = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); m_WriterIsActive = (activeChar == '\1' ? true : false); position = m_ColumnMajorFlagPosition; - const uint8_t val = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const uint8_t val = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); m_WriterIsRowMajor = val == 'n'; // move position to first row position = m_IndexHeaderSize; @@ -1071,14 +1017,13 @@ size_t DaosReader::ParseMetadataIndex(format::BufferSTL &bufferSTL, int n = 0; // a loop counter for current run4 int nrec = 0; // number of records in current run - while (position < buffer.size() && - metadataSizeToRead < maxMetadataSizeInMemory) + while (position < buffer.size() && metadataSizeToRead < maxMetadataSizeInMemory) { - const unsigned char recordID = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); - const uint64_t recordLength = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const unsigned char recordID = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t recordLength = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); const size_t dbgRecordStartPosition = position; switch (recordID) @@ -1086,18 +1031,18 @@ size_t DaosReader::ParseMetadataIndex(format::BufferSTL &bufferSTL, case IndexRecord::WriterMapRecord: { auto p = m_WriterMap.emplace(m_StepsCount, WriterMapStruct()); auto &s = p.first->second; - s.WriterCount = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); - s.AggregatorCount = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); - s.SubfileCount = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + s.WriterCount = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); + s.AggregatorCount = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); + s.SubfileCount = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); // Get the process -> subfile map s.RankToSubfile.reserve(s.WriterCount); for (uint64_t i = 0; i < s.WriterCount; i++) { - const uint64_t subfileIdx = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t subfileIdx = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); s.RankToSubfile.push_back(subfileIdx); } m_LastMapStep = m_StepsCount; @@ -1106,12 +1051,12 @@ size_t DaosReader::ParseMetadataIndex(format::BufferSTL &bufferSTL, } case IndexRecord::StepRecord: { std::vector ptrs; - const uint64_t MetadataPos = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); - const uint64_t MetadataSize = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); - const uint64_t FlushCount = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t MetadataPos = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t MetadataSize = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t FlushCount = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); if (!n) { @@ -1142,8 +1087,7 @@ size_t DaosReader::ParseMetadataIndex(format::BufferSTL &bufferSTL, buffer, DataPosPos, m_Minifooter.IsLittleEndian); const uint64_t DataSize = helper::ReadValue( buffer, DataPosPos, m_Minifooter.IsLittleEndian); - std::cout << "loc:" << DataPos << " siz:" << DataSize - << "; "; + std::cout << "loc:" << DataPos << " siz:" << DataSize << "; "; } const uint64_t DataPos = helper::ReadValue( buffer, DataPosPos, m_Minifooter.IsLittleEndian); @@ -1159,16 +1103,14 @@ size_t DaosReader::ParseMetadataIndex(format::BufferSTL &bufferSTL, MetadataPosTotalSkip += MetadataSize; if (minfo_size > 0) { - m_FilteredMetadataInfo.push_back( - std::make_pair(minfo_pos, minfo_size)); + m_FilteredMetadataInfo.push_back(std::make_pair(minfo_pos, minfo_size)); } minfo_pos = MetadataPos + MetadataSize; minfo_size = 0; } // skip over the writer -> data file offset records - position += - sizeof(uint64_t) * m_LastWriterCount * ((2 * FlushCount) + 1); + position += sizeof(uint64_t) * m_LastWriterCount * ((2 * FlushCount) + 1); ++m_AbsStepsInFile; ++n; break; @@ -1179,11 +1121,9 @@ size_t DaosReader::ParseMetadataIndex(format::BufferSTL &bufferSTL, { helper::Throw( "Engine", "DaosReader", "ParseMetadataIndex", - "Record " + std::to_string(nrec) + " (id = " + - std::to_string(recordID) + ") has invalid length " + - std::to_string(recordLength) + ". We parsed " + - std::to_string(position - dbgRecordStartPosition) + - " bytes for this record" + "Record " + std::to_string(nrec) + " (id = " + std::to_string(recordID) + + ") has invalid length " + std::to_string(recordLength) + ". We parsed " + + std::to_string(position - dbgRecordStartPosition) + " bytes for this record" ); } @@ -1201,14 +1141,13 @@ bool DaosReader::ReadActiveFlag(std::vector &buffer) { if (buffer.size() < m_ActiveFlagPosition) { - helper::Throw( - "Engine", "DaosReader", "ReadActiveFlag", - "called with a buffer smaller than required"); + helper::Throw("Engine", "DaosReader", "ReadActiveFlag", + "called with a buffer smaller than required"); } // Writer active flag size_t position = m_ActiveFlagPosition; - const char activeChar = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const char activeChar = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); m_WriterIsActive = (activeChar == '\1' ? true : false); return m_WriterIsActive; } @@ -1222,8 +1161,7 @@ bool DaosReader::CheckWriterActive() if (fsize >= m_IndexHeaderSize) { std::vector header(m_IndexHeaderSize, '\0'); - m_MDIndexFileManager.ReadFile(header.data(), m_IndexHeaderSize, 0, - 0); + m_MDIndexFileManager.ReadFile(header.data(), m_IndexHeaderSize, 0, 0); bool active = ReadActiveFlag(header); flag = (active ? 1 : 0); } @@ -1291,23 +1229,22 @@ StepStatus DaosReader::CheckForNewSteps(Seconds timeoutSeconds) return retval; } -void DaosReader::DoGetAbsoluteSteps(const VariableBase &variable, - std::vector &keys) const +void DaosReader::DoGetAbsoluteSteps(const VariableBase &variable, std::vector &keys) const { m_BP5Deserializer->GetAbsoluteSteps(variable, keys); return; } -#define declare_type(T) \ - void DaosReader::DoGetSync(Variable &variable, T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("DaosReader::Get"); \ - GetSyncCommon(variable, data); \ - } \ - void DaosReader::DoGetDeferred(Variable &variable, T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("DaosReader::Get"); \ - GetDeferredCommon(variable, data); \ +#define declare_type(T) \ + void DaosReader::DoGetSync(Variable &variable, T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("DaosReader::Get"); \ + GetSyncCommon(variable, data); \ + } \ + void DaosReader::DoGetDeferred(Variable &variable, T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("DaosReader::Get"); \ + GetDeferredCommon(variable, data); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/daos/DaosReader.h b/source/adios2/engine/daos/DaosReader.h index 57e955e8ae..a17ea69a87 100644 --- a/source/adios2/engine/daos/DaosReader.h +++ b/source/adios2/engine/daos/DaosReader.h @@ -26,18 +26,17 @@ #include #include -#define FAIL(fmt, ...) \ - do \ - { \ - fprintf(stderr, "Process %d(%s): " fmt " aborting\n", m_Comm.Rank(), \ - node, ##__VA_ARGS__); \ - MPI_Abort(MPI_COMM_WORLD, 1); \ +#define FAIL(fmt, ...) \ + do \ + { \ + fprintf(stderr, "Process %d(%s): " fmt " aborting\n", m_Comm.Rank(), node, ##__VA_ARGS__); \ + MPI_Abort(MPI_COMM_WORLD, 1); \ } while (0) -#define ASSERT(cond, ...) \ - do \ - { \ - if (!(cond)) \ - FAIL(__VA_ARGS__); \ +#define ASSERT(cond, ...) \ + do \ + { \ + if (!(cond)) \ + FAIL(__VA_ARGS__); \ } while (0) namespace adios2 @@ -58,13 +57,11 @@ class DaosReader : public DaosEngine, public Engine * @param openMode only read * @param comm */ - DaosReader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + DaosReader(IO &io, const std::string &name, const Mode mode, helper::Comm comm); ~DaosReader(); - StepStatus BeginStep(StepMode mode = StepMode::Read, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode = StepMode::Read, const float timeoutSeconds = -1.0) final; size_t CurrentStep() const final; @@ -73,10 +70,8 @@ class DaosReader : public DaosEngine, public Engine void PerformGets() final; MinVarInfo *MinBlocksInfo(const VariableBase &, const size_t Step) const; - bool VarShape(const VariableBase &Var, const size_t Step, - Dims &Shape) const; - bool VariableMinMax(const VariableBase &, const size_t Step, - MinMaxStruct &MinMax); + bool VarShape(const VariableBase &Var, const size_t Step, Dims &Shape) const; + bool VariableMinMax(const VariableBase &, const size_t Step, MinMaxStruct &MinMax); private: format::BP5Deserializer *m_BP5Deserializer = nullptr; @@ -162,16 +157,14 @@ class DaosReader : public DaosEngine, public Engine * Return true if slept * return false if sleep was not needed because it was overtime */ - bool SleepOrQuit(const TimePoint &timeoutInstant, - const Seconds &pollSeconds); + bool SleepOrQuit(const TimePoint &timeoutInstant, const Seconds &pollSeconds); /** Open one category of files within timeout. * @return: 0 = OK, 1 = timeout, 2 = error * lasterrmsg contains the error message in case of error */ size_t OpenWithTimeout(transportman::TransportMan &tm, const std::vector &fileNames, - const TimePoint &timeoutInstant, - const Seconds &pollSeconds, + const TimePoint &timeoutInstant, const Seconds &pollSeconds, std::string &lasterrmsg /*INOUT*/); /** Open files within timeout. @@ -187,8 +180,7 @@ class DaosReader : public DaosEngine, public Engine * track if new steps (after filtering with SelectSteps) are read in * and are ready to be processed. */ - void UpdateBuffer(const TimePoint &timeoutInstant, - const Seconds &pollSeconds, + void UpdateBuffer(const TimePoint &timeoutInstant, const Seconds &pollSeconds, const Seconds &timeoutSeconds); bool ReadActiveFlag(std::vector &buffer); @@ -203,8 +195,7 @@ class DaosReader : public DaosEngine, public Engine * m_WriterMapIndex * m_FilteredMetadataInfo */ - size_t ParseMetadataIndex(format::BufferSTL &bufferSTL, - const size_t absoluteStartPos, + size_t ParseMetadataIndex(format::BufferSTL &bufferSTL, const size_t absoluteStartPos, const bool hasHeader); /** Process the new metadata coming in (in UpdateBuffer) @@ -238,8 +229,8 @@ class DaosReader : public DaosEngine, public Engine */ void NotifyEngineNoVarsQuery(); -#define declare_type(T) \ - void DoGetSync(Variable &, T *) final; \ +#define declare_type(T) \ + void DoGetSync(Variable &, T *) final; \ void DoGetDeferred(Variable &, T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -258,8 +249,7 @@ class DaosReader : public DaosEngine, public Engine size_t DoSteps() const final; - void DoGetAbsoluteSteps(const VariableBase &variable, - std::vector &keys) const final; + void DoGetAbsoluteSteps(const VariableBase &variable, std::vector &keys) const final; uint32_t m_WriterColumnMajor = 0; bool m_ReaderIsRowMajor = true; @@ -271,11 +261,10 @@ class DaosReader : public DaosEngine, public Engine void InstallMetaMetaData(format::BufferSTL MetaMetadata); void InstallMetadataForTimestep(size_t Step); - std::pair - ReadData(adios2::transportman::TransportMan &FileManager, - const size_t maxOpenFiles, const size_t WriterRank, - const size_t Timestep, const size_t StartOffset, - const size_t Length, char *Destination); + std::pair ReadData(adios2::transportman::TransportMan &FileManager, + const size_t maxOpenFiles, const size_t WriterRank, + const size_t Timestep, const size_t StartOffset, + const size_t Length, char *Destination); struct WriterMapStruct { diff --git a/source/adios2/engine/daos/DaosWriter.cpp b/source/adios2/engine/daos/DaosWriter.cpp index e3e8f82abf..7c9e2100bf 100644 --- a/source/adios2/engine/daos/DaosWriter.cpp +++ b/source/adios2/engine/daos/DaosWriter.cpp @@ -33,12 +33,10 @@ namespace engine using namespace adios2::format; -DaosWriter::DaosWriter(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +DaosWriter::DaosWriter(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("DaosWriter", io, name, mode, std::move(comm)), m_BP5Serializer(), m_FileDataManager(io, m_Comm), m_FileMetadataManager(io, m_Comm), - m_FileMetadataIndexManager(io, m_Comm), m_FileMetaMetadataManager(io, m_Comm), - m_Profiler(m_Comm) + m_FileMetadataIndexManager(io, m_Comm), m_FileMetaMetadataManager(io, m_Comm), m_Profiler(m_Comm) { m_EngineStart = Now(); PERFSTUBS_SCOPED_TIMER("DaosWriter::Open"); @@ -98,15 +96,12 @@ StepStatus DaosWriter::BeginStep(StepMode mode, const float timeoutSeconds) Seconds wait = Now() - wait_start; if (m_Comm.Rank() == 0) { - WriteMetadataFileIndex(m_LatestMetaDataPos, - m_LatestMetaDataSize); + WriteMetadataFileIndex(m_LatestMetaDataPos, m_LatestMetaDataSize); if (m_Parameters.verbose > 0) { - std::cout << "BeginStep, wait on async write was = " - << wait.count() << " time since EndStep was = " - << m_LastTimeBetweenSteps.count() - << " expect next one to be = " - << m_ExpectedTimeBetweenSteps.count() + std::cout << "BeginStep, wait on async write was = " << wait.count() + << " time since EndStep was = " << m_LastTimeBetweenSteps.count() + << " expect next one to be = " << m_ExpectedTimeBetweenSteps.count() << std::endl; } } @@ -117,15 +112,14 @@ StepStatus DaosWriter::BeginStep(StepMode mode, const float timeoutSeconds) if (m_Parameters.BufferVType == (int)BufferVType::MallocVType) { m_BP5Serializer.InitStep(new MallocV( - "DaosWriter", false, m_BP5Serializer.m_BufferAlign, - m_BP5Serializer.m_BufferBlockSize, m_Parameters.InitialBufferSize, - m_Parameters.GrowthFactor)); + "DaosWriter", false, m_BP5Serializer.m_BufferAlign, m_BP5Serializer.m_BufferBlockSize, + m_Parameters.InitialBufferSize, m_Parameters.GrowthFactor)); } else { - m_BP5Serializer.InitStep(new ChunkV( - "DaosWriter", false, m_BP5Serializer.m_BufferAlign, - m_BP5Serializer.m_BufferBlockSize, m_Parameters.BufferChunkSize)); + m_BP5Serializer.InitStep(new ChunkV("DaosWriter", false, m_BP5Serializer.m_BufferAlign, + m_BP5Serializer.m_BufferBlockSize, + m_Parameters.BufferChunkSize)); } m_ThisTimestepDataSize = 0; @@ -140,8 +134,7 @@ void DaosWriter::PerformPuts() { PERFSTUBS_SCOPED_TIMER("DaosWriter::PerformPuts"); m_Profiler.Start("PP"); - m_BP5Serializer.PerformPuts(m_Parameters.AsyncWrite || - m_Parameters.DirectIO); + m_BP5Serializer.PerformPuts(m_Parameters.AsyncWrite || m_Parameters.DirectIO); m_Profiler.Stop("PP"); return; } @@ -151,20 +144,15 @@ void DaosWriter::WriteMetaMetadata( { for (auto &b : MetaMetaBlocks) { - m_FileMetaMetadataManager.WriteFiles((char *)&b.MetaMetaIDLen, - sizeof(size_t)); - m_FileMetaMetadataManager.WriteFiles((char *)&b.MetaMetaInfoLen, - sizeof(size_t)); - m_FileMetaMetadataManager.WriteFiles((char *)b.MetaMetaID, - b.MetaMetaIDLen); - m_FileMetaMetadataManager.WriteFiles((char *)b.MetaMetaInfo, - b.MetaMetaInfoLen); + m_FileMetaMetadataManager.WriteFiles((char *)&b.MetaMetaIDLen, sizeof(size_t)); + m_FileMetaMetadataManager.WriteFiles((char *)&b.MetaMetaInfoLen, sizeof(size_t)); + m_FileMetaMetadataManager.WriteFiles((char *)b.MetaMetaID, b.MetaMetaIDLen); + m_FileMetaMetadataManager.WriteFiles((char *)b.MetaMetaInfo, b.MetaMetaInfoLen); } } -uint64_t -DaosWriter::WriteMetadata(const std::vector &MetaDataBlocks, - const std::vector &AttributeBlocks) +uint64_t DaosWriter::WriteMetadata(const std::vector &MetaDataBlocks, + const std::vector &AttributeBlocks) { uint64_t MDataTotalSize = 0; uint64_t MetaDataSize = 0; @@ -245,11 +233,10 @@ void DaosWriter::WriteData(format::BufferV *Data) WriteData_TwoLevelShm_Async(Data); break; default: - helper::Throw( - "Engine", "DaosWriter", "WriteData", - "Aggregation method " + - std::to_string(m_Parameters.AggregationType) + - "is not supported in BP5"); + helper::Throw("Engine", "DaosWriter", "WriteData", + "Aggregation method " + + std::to_string(m_Parameters.AggregationType) + + "is not supported in BP5"); } } else @@ -266,21 +253,18 @@ void DaosWriter::WriteData(format::BufferV *Data) WriteData_TwoLevelShm(Data); break; default: - helper::Throw( - "Engine", "DaosWriter", "WriteData", - "Aggregation method " + - std::to_string(m_Parameters.AggregationType) + - "is not supported in BP5"); + helper::Throw("Engine", "DaosWriter", "WriteData", + "Aggregation method " + + std::to_string(m_Parameters.AggregationType) + + "is not supported in BP5"); } delete Data; } } -void DaosWriter::WriteData_EveryoneWrites(format::BufferV *Data, - bool SerializedWriters) +void DaosWriter::WriteData_EveryoneWrites(format::BufferV *Data, bool SerializedWriters) { - const aggregator::MPIChain *a = - dynamic_cast(m_Aggregator); + const aggregator::MPIChain *a = dynamic_cast(m_Aggregator); // new step writing starts at offset m_DataPos on aggregator // others will wait for the position to arrive from the rank below @@ -292,8 +276,7 @@ void DaosWriter::WriteData_EveryoneWrites(format::BufferV *Data, } // align to PAGE_SIZE - m_DataPos += - helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); + m_DataPos += helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); m_StartDataPos = m_DataPos; if (!SerializedWriters && a->m_Comm.Rank() < a->m_Comm.Size() - 1) @@ -306,8 +289,7 @@ void DaosWriter::WriteData_EveryoneWrites(format::BufferV *Data, m_DataPos += Data->Size(); std::vector DataVec = Data->DataVec(); - m_FileDataManager.WriteFileAt(DataVec.data(), DataVec.size(), - m_StartDataPos); + m_FileDataManager.WriteFileAt(DataVec.data(), DataVec.size(), m_StartDataPos); if (SerializedWriters && a->m_Comm.Rank() < a->m_Comm.Size() - 1) { @@ -323,8 +305,7 @@ void DaosWriter::WriteData_EveryoneWrites(format::BufferV *Data, // so it can update its data pos if (a->m_Comm.Rank() == a->m_Comm.Size() - 1) { - a->m_Comm.Isend(&m_DataPos, 1, 0, 0, - "Final chain token in DaosWriter::WriteData"); + a->m_Comm.Isend(&m_DataPos, 1, 0, 0, "Final chain token in DaosWriter::WriteData"); } if (a->m_Comm.Rank() == 0) { @@ -334,15 +315,13 @@ void DaosWriter::WriteData_EveryoneWrites(format::BufferV *Data, } } -void DaosWriter::WriteMetadataFileIndex(uint64_t MetaDataPos, - uint64_t MetaDataSize) +void DaosWriter::WriteMetadataFileIndex(uint64_t MetaDataPos, uint64_t MetaDataSize) { m_FileMetadataManager.FlushFiles(); // bufsize: Step record size_t bufsize = - 1 + (4 + ((FlushPosSizeInfo.size() * 2) + 1) * m_Comm.Size()) * - sizeof(uint64_t); + 1 + (4 + ((FlushPosSizeInfo.size() * 2) + 1) * m_Comm.Size()) * sizeof(uint64_t); if (MetaDataPos == 0) { // First time, write the headers @@ -378,16 +357,14 @@ void DaosWriter::WriteMetadataFileIndex(uint64_t MetaDataPos, helper::CopyToBuffer(buf, pos, &d, 1); d = static_cast(m_Aggregator->m_SubStreams); helper::CopyToBuffer(buf, pos, &d, 1); - helper::CopyToBuffer(buf, pos, m_WriterSubfileMap.data(), - m_Comm.Size()); + helper::CopyToBuffer(buf, pos, m_WriterSubfileMap.data(), m_Comm.Size()); m_WriterSubfileMap.clear(); } // Step record record = StepRecord; helper::CopyToBuffer(buf, pos, &record, 1); // record type - d = (3 + ((FlushPosSizeInfo.size() * 2) + 1) * m_Comm.Size()) * - sizeof(uint64_t); + d = (3 + ((FlushPosSizeInfo.size() * 2) + 1) * m_Comm.Size()) * sizeof(uint64_t); helper::CopyToBuffer(buf, pos, &d, 1); // record length helper::CopyToBuffer(buf, pos, &MetaDataPos, 1); helper::CopyToBuffer(buf, pos, &MetaDataSize, 1); @@ -396,12 +373,10 @@ void DaosWriter::WriteMetadataFileIndex(uint64_t MetaDataPos, for (int writer = 0; writer < m_Comm.Size(); writer++) { - for (size_t flushNum = 0; flushNum < FlushPosSizeInfo.size(); - flushNum++) + for (size_t flushNum = 0; flushNum < FlushPosSizeInfo.size(); flushNum++) { // add two numbers here - helper::CopyToBuffer(buf, pos, - &FlushPosSizeInfo[flushNum][2 * writer], 2); + helper::CopyToBuffer(buf, pos, &FlushPosSizeInfo[flushNum][2 * writer], 2); } helper::CopyToBuffer(buf, pos, &m_WriterDataPos[writer], 1); } @@ -419,11 +394,9 @@ void DaosWriter::WriteMetadataFileIndex(uint64_t MetaDataPos, for (size_t j = 0; j < FlushPosSizeInfo.size(); ++j) { std::cout << "loc:" << buf[3 + eachWriterSize * i + j * 2] - << " siz:" << buf[3 + eachWriterSize * i + j * 2 + 1] - << std::endl; + << " siz:" << buf[3 + eachWriterSize * i + j * 2 + 1] << std::endl; } - std::cout << "loc:" << buf[3 + eachWriterSize * (i + 1) - 1] - << std::endl; + std::cout << "loc:" << buf[3 + eachWriterSize * (i + 1) - 1] << std::endl; } std::cout << "}" << std::endl; #endif @@ -433,13 +406,11 @@ void DaosWriter::WriteMetadataFileIndex(uint64_t MetaDataPos, void DaosWriter::NotifyEngineAttribute(std::string name, DataType type) noexcept { - helper::Throw( - "DaosWriter", "Engine", "ThrowUp", - "Engine does not support NotifyEngineAttribute"); + helper::Throw("DaosWriter", "Engine", "ThrowUp", + "Engine does not support NotifyEngineAttribute"); } -void DaosWriter::NotifyEngineAttribute(std::string name, AttributeBase *Attr, - void *data) noexcept +void DaosWriter::NotifyEngineAttribute(std::string name, AttributeBase *Attr, void *data) noexcept { if (!m_Parameters.UseOneTimeAttributes) { @@ -480,8 +451,7 @@ void DaosWriter::MarshalAttributes() } else if (type == helper::GetDataType()) { - core::Attribute &attribute = - *m_IO.InquireAttribute(name); + core::Attribute &attribute = *m_IO.InquireAttribute(name); void *data_addr; if (attribute.m_IsSingleValue) { @@ -489,8 +459,7 @@ void DaosWriter::MarshalAttributes() } else { - const char **tmp = - (const char **)malloc(sizeof(char *) * element_count); + const char **tmp = (const char **)malloc(sizeof(char *) * element_count); for (int i = 0; i < element_count; i++) { auto str = &attribute.m_DataArray[i]; @@ -500,22 +469,22 @@ void DaosWriter::MarshalAttributes() data_addr = (void *)tmp; } - m_BP5Serializer.MarshalAttribute(name.c_str(), type, sizeof(char *), - element_count, data_addr); + m_BP5Serializer.MarshalAttribute(name.c_str(), type, sizeof(char *), element_count, + data_addr); } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - core::Attribute &attribute = *m_IO.InquireAttribute(name); \ - int element_count = -1; \ - void *data_addr = &attribute.m_DataSingleValue; \ - if (!attribute.m_IsSingleValue) \ - { \ - element_count = attribute.m_Elements; \ - data_addr = attribute.m_DataArray.data(); \ - } \ - m_BP5Serializer.MarshalAttribute(attribute.m_Name.c_str(), type, \ - sizeof(T), element_count, data_addr); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + core::Attribute &attribute = *m_IO.InquireAttribute(name); \ + int element_count = -1; \ + void *data_addr = &attribute.m_DataSingleValue; \ + if (!attribute.m_IsSingleValue) \ + { \ + element_count = attribute.m_Elements; \ + data_addr = attribute.m_DataArray.data(); \ + } \ + m_BP5Serializer.MarshalAttribute(attribute.m_Name.c_str(), type, sizeof(T), element_count, \ + data_addr); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) @@ -535,8 +504,8 @@ void DaosWriter::EndStep() MarshalAttributes(); // true: advances step - auto TSInfo = m_BP5Serializer.CloseTimestep( - m_WriterStep, m_Parameters.AsyncWrite || m_Parameters.DirectIO); + auto TSInfo = m_BP5Serializer.CloseTimestep(m_WriterStep, + m_Parameters.AsyncWrite || m_Parameters.DirectIO); /* TSInfo includes NewMetaMetaBlocks, the MetaEncodeBuffer, the * AttributeEncodeBuffer and the data encode Vector */ @@ -566,19 +535,16 @@ void DaosWriter::EndStep() core::iovec a{nullptr, 0}; if (TSInfo.AttributeEncodeBuffer) { - a = {TSInfo.AttributeEncodeBuffer->Data(), - TSInfo.AttributeEncodeBuffer->m_FixedSize}; + a = {TSInfo.AttributeEncodeBuffer->Data(), TSInfo.AttributeEncodeBuffer->m_FixedSize}; } MetaBuffer = m_BP5Serializer.CopyMetadataToContiguous( - TSInfo.NewMetaMetaBlocks, {m}, {a}, {m_ThisTimestepDataSize}, - {m_StartDataPos}); + TSInfo.NewMetaMetaBlocks, {m}, {a}, {m_ThisTimestepDataSize}, {m_StartDataPos}); if (m_Aggregator->m_Comm.Size() > 1) { // level 1 m_Profiler.Start("meta_gather1"); size_t LocalSize = MetaBuffer.size(); - std::vector RecvCounts = - m_Aggregator->m_Comm.GatherValues(LocalSize, 0); + std::vector RecvCounts = m_Aggregator->m_Comm.GatherValues(LocalSize, 0); std::vector RecvBuffer; if (m_Aggregator->m_Comm.Rank() == 0) { @@ -590,25 +556,22 @@ void DaosWriter::EndStep() << TotalSize << " bytes from aggregator group" << std::endl;*/ } - m_Aggregator->m_Comm.GathervArrays(MetaBuffer.data(), LocalSize, - RecvCounts.data(), RecvCounts.size(), - RecvBuffer.data(), 0); + m_Aggregator->m_Comm.GathervArrays(MetaBuffer.data(), LocalSize, RecvCounts.data(), + RecvCounts.size(), RecvBuffer.data(), 0); m_Profiler.Stop("meta_gather1"); if (m_Aggregator->m_Comm.Rank() == 0) { - std::vector - UniqueMetaMetaBlocks; + std::vector UniqueMetaMetaBlocks; std::vector DataSizes; std::vector WriterDataPositions; std::vector AttributeBlocks; auto Metadata = m_BP5Serializer.BreakoutContiguousMetadata( - RecvBuffer, RecvCounts, UniqueMetaMetaBlocks, AttributeBlocks, - DataSizes, WriterDataPositions); + RecvBuffer, RecvCounts, UniqueMetaMetaBlocks, AttributeBlocks, DataSizes, + WriterDataPositions); MetaBuffer.clear(); MetaBuffer = m_BP5Serializer.CopyMetadataToContiguous( - UniqueMetaMetaBlocks, Metadata, AttributeBlocks, DataSizes, - WriterDataPositions); + UniqueMetaMetaBlocks, Metadata, AttributeBlocks, DataSizes, WriterDataPositions); } } // level 1 m_Profiler.Stop("meta_lvl1"); @@ -635,9 +598,8 @@ void DaosWriter::EndStep() << std::endl;*/ } - m_CommAggregators.GathervArrays( - MetaBuffer.data(), LocalSize, RecvCounts.data(), - RecvCounts.size(), RecvBuffer.data(), 0); + m_CommAggregators.GathervArrays(MetaBuffer.data(), LocalSize, RecvCounts.data(), + RecvCounts.size(), RecvBuffer.data(), 0); buf = &RecvBuffer; m_Profiler.Stop("meta_gather2"); } @@ -649,16 +611,14 @@ void DaosWriter::EndStep() if (m_CommAggregators.Rank() == 0) { - std::vector - UniqueMetaMetaBlocks; + std::vector UniqueMetaMetaBlocks; std::vector DataSizes; std::vector AttributeBlocks; m_WriterDataPos.resize(0); auto Metadata = m_BP5Serializer.BreakoutContiguousMetadata( - *buf, RecvCounts, UniqueMetaMetaBlocks, AttributeBlocks, - DataSizes, m_WriterDataPos); - assert(m_WriterDataPos.size() == - static_cast(m_Comm.Size())); + *buf, RecvCounts, UniqueMetaMetaBlocks, AttributeBlocks, DataSizes, + m_WriterDataPos); + assert(m_WriterDataPos.size() == static_cast(m_Comm.Size())); WriteMetaMetadata(UniqueMetaMetaBlocks); m_LatestMetaDataPos = m_MetaDataPos; m_LatestMetaDataSize = WriteMetadata(Metadata, AttributeBlocks); @@ -666,8 +626,7 @@ void DaosWriter::EndStep() // m_LatestMetaDataSize = 0; if (!m_Parameters.AsyncWrite) { - WriteMetadataFileIndex(m_LatestMetaDataPos, - m_LatestMetaDataSize); + WriteMetadataFileIndex(m_LatestMetaDataPos, m_LatestMetaDataSize); } } } // level 2 @@ -677,11 +636,9 @@ void DaosWriter::EndStep() int rc; sprintf(key, "step%d-rank%d", m_WriterStep, m_Comm.Rank()); - std::cout << __FILE__ << "::" << __func__ << "(), step: " << m_WriterStep - << std::endl; + std::cout << __FILE__ << "::" << __func__ << "(), step: " << m_WriterStep << std::endl; std::cout << "Rank = " << m_Comm.Rank() - << ", Metadata size = " << TSInfo.MetaEncodeBuffer->m_FixedSize - << std::endl; + << ", Metadata size = " << TSInfo.MetaEncodeBuffer->m_FixedSize << std::endl; std::cout << "key = " << key << std::endl; std::cout << "Printing the first 10 bytes of Metadata" << std::endl; char *data = reinterpret_cast(TSInfo.MetaEncodeBuffer->Data()); @@ -692,8 +649,7 @@ void DaosWriter::EndStep() std::cout << static_cast(data[i]) << " "; } std::cout << std::endl; - rc = daos_kv_put(oh, DAOS_TX_NONE, 0, key, - TSInfo.MetaEncodeBuffer->m_FixedSize, + rc = daos_kv_put(oh, DAOS_TX_NONE, 0, key, TSInfo.MetaEncodeBuffer->m_FixedSize, TSInfo.MetaEncodeBuffer->Data(), NULL); ASSERT(rc == 0, "daos_kv_put() failed with %d", rc); @@ -736,18 +692,15 @@ void DaosWriter::InitParameters() m_DrainBB = m_WriteToBB && m_Parameters.BurstBufferDrain; unsigned int nproc = (unsigned int)m_Comm.Size(); - m_Parameters.NumAggregators = - helper::SetWithinLimit(m_Parameters.NumAggregators, 0U, nproc); - m_Parameters.NumSubFiles = - helper::SetWithinLimit(m_Parameters.NumSubFiles, 0U, nproc); - m_Parameters.AggregatorRatio = - helper::SetWithinLimit(m_Parameters.AggregatorRatio, 0U, nproc); + m_Parameters.NumAggregators = helper::SetWithinLimit(m_Parameters.NumAggregators, 0U, nproc); + m_Parameters.NumSubFiles = helper::SetWithinLimit(m_Parameters.NumSubFiles, 0U, nproc); + m_Parameters.AggregatorRatio = helper::SetWithinLimit(m_Parameters.AggregatorRatio, 0U, nproc); if (m_Parameters.NumAggregators == 0) { if (m_Parameters.AggregatorRatio > 0) { - m_Parameters.NumAggregators = helper::SetWithinLimit( - nproc / m_Parameters.AggregatorRatio, 0U, nproc); + m_Parameters.NumAggregators = + helper::SetWithinLimit(nproc / m_Parameters.AggregatorRatio, 0U, nproc); } else if (m_Parameters.NumSubFiles > 0) { @@ -755,12 +708,11 @@ void DaosWriter::InitParameters() helper::SetWithinLimit(m_Parameters.NumSubFiles, 0U, nproc); } } - m_Parameters.NumSubFiles = helper::SetWithinLimit( - m_Parameters.NumSubFiles, 0U, m_Parameters.NumAggregators); + m_Parameters.NumSubFiles = + helper::SetWithinLimit(m_Parameters.NumSubFiles, 0U, m_Parameters.NumAggregators); // Limiting to max 64MB page size - m_Parameters.StripeSize = - helper::SetWithinLimit(m_Parameters.StripeSize, 0U, 67108864U); + m_Parameters.StripeSize = helper::SetWithinLimit(m_Parameters.StripeSize, 0U, 67108864U); if (m_Parameters.StripeSize == 0) { m_Parameters.StripeSize = 4096; @@ -776,15 +728,12 @@ void DaosWriter::InitParameters() m_BP5Serializer.m_BufferAlign = m_Parameters.DirectIOAlignBuffer; if (m_Parameters.StripeSize % m_Parameters.DirectIOAlignOffset) { - size_t k = - m_Parameters.StripeSize / m_Parameters.DirectIOAlignOffset + 1; + size_t k = m_Parameters.StripeSize / m_Parameters.DirectIOAlignOffset + 1; m_Parameters.StripeSize = k * m_Parameters.DirectIOAlignOffset; } if (m_Parameters.BufferChunkSize % m_Parameters.DirectIOAlignOffset) { - size_t k = m_Parameters.BufferChunkSize / - m_Parameters.DirectIOAlignOffset + - 1; + size_t k = m_Parameters.BufferChunkSize / m_Parameters.DirectIOAlignOffset + 1; m_Parameters.BufferChunkSize = k * m_Parameters.DirectIOAlignOffset; } } @@ -815,30 +764,26 @@ uint64_t DaosWriter::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) { std::string m = (IsLittleEndian ? "Little" : "Big"); - helper::Throw( - "Engine", "DaosWriter", "CountStepsInMetadataIndex", - "ADIOS2 BP5 Engine only supports appending with the same " - "endianness. The existing file is " + - m + "Endian"); + helper::Throw("Engine", "DaosWriter", "CountStepsInMetadataIndex", + "ADIOS2 BP5 Engine only supports appending with the same " + "endianness. The existing file is " + + m + "Endian"); } // BP version position = m_BPVersionPosition; - uint8_t Version = - helper::ReadValue(buffer, position, IsLittleEndian); + uint8_t Version = helper::ReadValue(buffer, position, IsLittleEndian); if (Version != 5) { - helper::Throw( - "Engine", "DaosWriter", "CountStepsInMetadataIndex", - "ADIOS2 BP5 Engine only supports bp format " - "version 5, found " + - std::to_string(Version) + " version"); + helper::Throw("Engine", "DaosWriter", "CountStepsInMetadataIndex", + "ADIOS2 BP5 Engine only supports bp format " + "version 5, found " + + std::to_string(Version) + " version"); } // BP minor version position = m_BPMinorVersionPosition; - uint8_t minorVersion = - helper::ReadValue(buffer, position, IsLittleEndian); + uint8_t minorVersion = helper::ReadValue(buffer, position, IsLittleEndian); if (minorVersion != m_BP5MinorVersion) { helper::Throw( @@ -849,19 +794,16 @@ uint64_t DaosWriter::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) } position = m_ColumnMajorFlagPosition; - const uint8_t columnMajor = - helper::ReadValue(buffer, position, IsLittleEndian); - const uint8_t NowColumnMajor = - (m_IO.m_ArrayOrder == ArrayOrdering::ColumnMajor) ? 'y' : 'n'; + const uint8_t columnMajor = helper::ReadValue(buffer, position, IsLittleEndian); + const uint8_t NowColumnMajor = (m_IO.m_ArrayOrder == ArrayOrdering::ColumnMajor) ? 'y' : 'n'; if (columnMajor != NowColumnMajor) { std::string m = (columnMajor == 'y' ? "column" : "row"); - helper::Throw( - "Engine", "DaosWriter", "CountStepsInMetadataIndex", - "ADIOS2 BP5 Engine only supports appending with the same " - "column/row major settings as it was written." - " Existing file is " + - m + " major"); + helper::Throw("Engine", "DaosWriter", "CountStepsInMetadataIndex", + "ADIOS2 BP5 Engine only supports appending with the same " + "column/row major settings as it was written." + " Existing file is " + + m + " major"); } position = m_IndexHeaderSize; // after the header @@ -877,12 +819,9 @@ uint64_t DaosWriter::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) switch (recordID) { case IndexRecord::WriterMapRecord: { - m_AppendWriterCount = - helper::ReadValue(buffer, position, IsLittleEndian); - m_AppendAggregatorCount = - helper::ReadValue(buffer, position, IsLittleEndian); - m_AppendSubfileCount = - helper::ReadValue(buffer, position, IsLittleEndian); + m_AppendWriterCount = helper::ReadValue(buffer, position, IsLittleEndian); + m_AppendAggregatorCount = helper::ReadValue(buffer, position, IsLittleEndian); + m_AppendSubfileCount = helper::ReadValue(buffer, position, IsLittleEndian); if (m_AppendSubfileCount > nDataFiles) { nDataFiles = m_AppendSubfileCount; @@ -896,8 +835,7 @@ uint64_t DaosWriter::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) const uint64_t FlushCount = helper::ReadValue(buffer, position, IsLittleEndian); // jump over the metadata positions - position += - sizeof(uint64_t) * m_AppendWriterCount * ((2 * FlushCount) + 1); + position += sizeof(uint64_t) * m_AppendWriterCount * ((2 * FlushCount) + 1); availableSteps++; break; } @@ -962,26 +900,23 @@ uint64_t DaosWriter::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) switch (recordID) { case IndexRecord::WriterMapRecord: { - m_AppendWriterCount = - helper::ReadValue(buffer, position, IsLittleEndian); - m_AppendAggregatorCount = - helper::ReadValue(buffer, position, IsLittleEndian); - m_AppendSubfileCount = - helper::ReadValue(buffer, position, IsLittleEndian); + m_AppendWriterCount = helper::ReadValue(buffer, position, IsLittleEndian); + m_AppendAggregatorCount = helper::ReadValue(buffer, position, IsLittleEndian); + m_AppendSubfileCount = helper::ReadValue(buffer, position, IsLittleEndian); // Get the process -> subfile map writerToFileMap.clear(); for (uint64_t i = 0; i < m_AppendWriterCount; i++) { - const uint64_t subfileIdx = helper::ReadValue( - buffer, position, IsLittleEndian); + const uint64_t subfileIdx = + helper::ReadValue(buffer, position, IsLittleEndian); writerToFileMap.push_back(subfileIdx); } break; } case IndexRecord::StepRecord: { - m_AppendMetadataIndexPos = position - sizeof(unsigned char) - - sizeof(uint64_t); // pos of RecordID + m_AppendMetadataIndexPos = + position - sizeof(unsigned char) - sizeof(uint64_t); // pos of RecordID const uint64_t MetadataPos = helper::ReadValue(buffer, position, IsLittleEndian); position += sizeof(uint64_t); // MetadataSize @@ -997,11 +932,9 @@ uint64_t DaosWriter::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) for (uint64_t i = 0; i < m_AppendWriterCount; i++) { // first flush/write position will do - const size_t FirstDataPos = - static_cast(helper::ReadValue( - buffer, position, IsLittleEndian)); - position += - sizeof(uint64_t) * 2 * FlushCount; // no need to read + const size_t FirstDataPos = static_cast( + helper::ReadValue(buffer, position, IsLittleEndian)); + position += sizeof(uint64_t) * 2 * FlushCount; // no need to read /* std::cout << "Writer " << i << " subfile " << writerToFileMap[i] << " first data loc:" << FirstDataPos << std::endl; */ @@ -1014,8 +947,7 @@ uint64_t DaosWriter::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) else { // jump over all data offsets in this step - position += sizeof(uint64_t) * m_AppendWriterCount * - (1 + 2 * FlushCount); + position += sizeof(uint64_t) * m_AppendWriterCount * (1 + 2 * FlushCount); } currentStep++; break; @@ -1033,24 +965,21 @@ void DaosWriter::InitAggregator() // m_Aggregator.m_SubFileIndex is always set if (m_Parameters.AggregationType == (int)AggregationType::EveryoneWrites || - m_Parameters.AggregationType == - (int)AggregationType::EveryoneWritesSerial) + m_Parameters.AggregationType == (int)AggregationType::EveryoneWritesSerial) { m_Parameters.NumSubFiles = m_Parameters.NumAggregators; - m_AggregatorEveroneWrites.Init(m_Parameters.NumAggregators, - m_Parameters.NumSubFiles, m_Comm); + m_AggregatorEveroneWrites.Init(m_Parameters.NumAggregators, m_Parameters.NumSubFiles, + m_Comm); m_IAmDraining = m_AggregatorEveroneWrites.m_IsAggregator; m_IAmWritingData = true; DataWritingComm = &m_AggregatorEveroneWrites.m_Comm; - m_Aggregator = static_cast( - &m_AggregatorEveroneWrites); + m_Aggregator = static_cast(&m_AggregatorEveroneWrites); } else { size_t numNodes = m_AggregatorTwoLevelShm.PreInit(m_Comm); (void)numNodes; - m_AggregatorTwoLevelShm.Init(m_Parameters.NumAggregators, - m_Parameters.NumSubFiles, m_Comm); + m_AggregatorTwoLevelShm.Init(m_Parameters.NumAggregators, m_Parameters.NumSubFiles, m_Comm); /*std::cout << "Rank " << m_RankMPI << " aggr? " << m_AggregatorTwoLevelShm.m_IsAggregator << " master? " @@ -1063,16 +992,14 @@ void DaosWriter::InitAggregator() m_IAmDraining = m_AggregatorTwoLevelShm.m_IsMasterAggregator; m_IAmWritingData = m_AggregatorTwoLevelShm.m_IsAggregator; DataWritingComm = &m_AggregatorTwoLevelShm.m_AggregatorChainComm; - m_Aggregator = - static_cast(&m_AggregatorTwoLevelShm); + m_Aggregator = static_cast(&m_AggregatorTwoLevelShm); } /* comm for Aggregators only. * We are only interested in the chain of rank 0s */ int color = m_Aggregator->m_Comm.Rank(); - m_CommAggregators = - m_Comm.Split(color, 0, "creating level 2 chain of aggregators at Open"); + m_CommAggregators = m_Comm.Split(color, 0, "creating level 2 chain of aggregators at Open"); } void DaosWriter::InitTransports() @@ -1100,12 +1027,10 @@ void DaosWriter::InitTransports() // Names passed to IO AddTransport option with key "Name" const std::vector transportsNames = - m_FileDataManager.GetFilesBaseNames(m_BBName, - m_IO.m_TransportsParameters); + m_FileDataManager.GetFilesBaseNames(m_BBName, m_IO.m_TransportsParameters); // /path/name.bp.dir/name.bp.rank - m_SubStreamNames = - GetBPSubStreamNames(transportsNames, m_Aggregator->m_SubStreamIndex); + m_SubStreamNames = GetBPSubStreamNames(transportsNames, m_Aggregator->m_SubStreamIndex); if (m_IAmDraining) { @@ -1113,10 +1038,9 @@ void DaosWriter::InitTransports() if (m_DrainBB) { const std::vector drainTransportNames = - m_FileDataManager.GetFilesBaseNames( - m_Name, m_IO.m_TransportsParameters); - m_DrainSubStreamNames = GetBPSubStreamNames( - drainTransportNames, m_Aggregator->m_SubStreamIndex); + m_FileDataManager.GetFilesBaseNames(m_Name, m_IO.m_TransportsParameters); + m_DrainSubStreamNames = + GetBPSubStreamNames(drainTransportNames, m_Aggregator->m_SubStreamIndex); /* start up BB thread */ // m_FileDrainer.SetVerbose( // m_Parameters.BurstBufferVerbose, @@ -1134,15 +1058,13 @@ void DaosWriter::InitTransports() m_MetaMetadataFileNames = GetBPMetaMetadataFileNames(transportsNames); m_MetadataIndexFileNames = GetBPMetadataIndexFileNames(transportsNames); } - m_FileMetadataManager.MkDirsBarrier(m_MetadataFileNames, - m_IO.m_TransportsParameters, + m_FileMetadataManager.MkDirsBarrier(m_MetadataFileNames, m_IO.m_TransportsParameters, m_Parameters.NodeLocal || m_WriteToBB); /* Create the directories on burst buffer if used */ if (m_DrainBB) { /* Create the directories on target anyway by main thread */ - m_FileDataManager.MkDirsBarrier(m_DrainSubStreamNames, - m_IO.m_TransportsParameters, + m_FileDataManager.MkDirsBarrier(m_DrainSubStreamNames, m_IO.m_TransportsParameters, m_Parameters.NodeLocal); } @@ -1168,9 +1090,8 @@ void DaosWriter::InitTransports() if (m_IAmWritingData) { - m_FileDataManager.OpenFiles(m_SubStreamNames, m_OpenMode, - m_IO.m_TransportsParameters, useProfiler, - *DataWritingComm); + m_FileDataManager.OpenFiles(m_SubStreamNames, m_OpenMode, m_IO.m_TransportsParameters, + useProfiler, *DataWritingComm); } if (m_IAmDraining) @@ -1192,26 +1113,20 @@ void DaosWriter::InitTransports() m_IO.m_TransportsParameters[i]["DirectIO"] = "false"; } m_FileMetaMetadataManager.OpenFiles(m_MetaMetadataFileNames, m_OpenMode, - m_IO.m_TransportsParameters, - useProfiler); + m_IO.m_TransportsParameters, useProfiler); m_FileMetadataManager.OpenFiles(m_MetadataFileNames, m_OpenMode, - m_IO.m_TransportsParameters, - useProfiler); + m_IO.m_TransportsParameters, useProfiler); - m_FileMetadataIndexManager.OpenFiles( - m_MetadataIndexFileNames, m_OpenMode, m_IO.m_TransportsParameters, - useProfiler); + m_FileMetadataIndexManager.OpenFiles(m_MetadataIndexFileNames, m_OpenMode, + m_IO.m_TransportsParameters, useProfiler); if (m_DrainBB) { const std::vector drainTransportNames = - m_FileDataManager.GetFilesBaseNames( - m_Name, m_IO.m_TransportsParameters); - m_DrainMetadataFileNames = - GetBPMetadataFileNames(drainTransportNames); - m_DrainMetadataIndexFileNames = - GetBPMetadataIndexFileNames(drainTransportNames); + m_FileDataManager.GetFilesBaseNames(m_Name, m_IO.m_TransportsParameters); + m_DrainMetadataFileNames = GetBPMetadataFileNames(drainTransportNames); + m_DrainMetadataIndexFileNames = GetBPMetadataIndexFileNames(drainTransportNames); for (const auto &name : m_DrainMetadataFileNames) { @@ -1236,8 +1151,7 @@ void DaosWriter::InitDAOS() /** connect to the just created DAOS pool */ rc = daos_pool_connect(pool_label, DSS_PSETID, // DAOS_PC_EX , - DAOS_PC_RW /* read write access */, - &poh /* returned pool handle */, + DAOS_PC_RW /* read write access */, &poh /* returned pool handle */, NULL /* returned pool info */, NULL /* event */); ASSERT(rc == 0, "pool connect failed with %d", rc); } @@ -1280,11 +1194,11 @@ void DaosWriter::InitDAOS() } /*generate the header for the metadata index file*/ -void DaosWriter::MakeHeader(std::vector &buffer, size_t &position, - const std::string fileType, const bool isActive) +void DaosWriter::MakeHeader(std::vector &buffer, size_t &position, const std::string fileType, + const bool isActive) { - auto lf_CopyVersionChar = [](const std::string version, - std::vector &buffer, size_t &position) { + auto lf_CopyVersionChar = [](const std::string version, std::vector &buffer, + size_t &position) { helper::CopyToBuffer(buffer, position, version.c_str()); }; @@ -1297,8 +1211,7 @@ void DaosWriter::MakeHeader(std::vector &buffer, size_t &position, "Engine", "DaosWriter", "MakeHeader", "BP4Serializer::MakeHeader can only be called for an empty " "buffer. This one for " + - fileType + " already has content of " + - std::to_string(position) + " bytes."); + fileType + " already has content of " + std::to_string(position) + " bytes."); } if (buffer.size() < m_IndexHeaderSize) @@ -1318,27 +1231,24 @@ void DaosWriter::MakeHeader(std::vector &buffer, size_t &position, "ADIOS Coding ERROR in BP4Serializer::MakeHeader. Version Tag " "position mismatch"); } - std::string versionLongTag("ADIOS-BP v" + majorVersion + "." + - minorVersion + "." + patchVersion + " "); + std::string versionLongTag("ADIOS-BP v" + majorVersion + "." + minorVersion + "." + + patchVersion + " "); size_t maxTypeLen = m_VersionTagLength - versionLongTag.size(); const std::string fileTypeStr = fileType.substr(0, maxTypeLen); versionLongTag += fileTypeStr; const size_t versionLongTagSize = versionLongTag.size(); if (versionLongTagSize < m_VersionTagLength) { - helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), - versionLongTagSize); + helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), versionLongTagSize); position += m_VersionTagLength - versionLongTagSize; } else if (versionLongTagSize > m_VersionTagLength) { - helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), - m_VersionTagLength); + helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), m_VersionTagLength); } else { - helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), - m_VersionTagLength); + helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), m_VersionTagLength); } // byte 32-35: MAJOR MINOR PATCH Unused @@ -1398,8 +1308,7 @@ void DaosWriter::MakeHeader(std::vector &buffer, size_t &position, // byte 40 columnMajor // write if data is column major in metadata and data - const uint8_t columnMajor = - (m_IO.m_ArrayOrder == ArrayOrdering::ColumnMajor) ? 'y' : 'n'; + const uint8_t columnMajor = (m_IO.m_ArrayOrder == ArrayOrdering::ColumnMajor) ? 'y' : 'n'; helper::CopyToBuffer(buffer, position, &columnMajor); // byte 41-63: unused @@ -1410,8 +1319,7 @@ void DaosWriter::MakeHeader(std::vector &buffer, size_t &position, void DaosWriter::UpdateActiveFlag(const bool active) { const char activeChar = (active ? '\1' : '\0'); - m_FileMetadataIndexManager.WriteFileAt(&activeChar, 1, - m_ActiveFlagPosition); + m_FileMetadataIndexManager.WriteFileAt(&activeChar, 1, m_ActiveFlagPosition); m_FileMetadataIndexManager.FlushFiles(); m_FileMetadataIndexManager.SeekToFileEnd(); if (m_DrainBB) @@ -1419,8 +1327,7 @@ void DaosWriter::UpdateActiveFlag(const bool active) for (size_t i = 0; i < m_MetadataIndexFileNames.size(); ++i) { m_FileDrainer.AddOperationWriteAt(m_DrainMetadataIndexFileNames[i], - m_ActiveFlagPosition, 1, - &activeChar); + m_ActiveFlagPosition, 1, &activeChar); m_FileDrainer.AddOperationSeekEnd(m_DrainMetadataIndexFileNames[i]); } } @@ -1435,14 +1342,12 @@ void DaosWriter::InitBPBuffer() if (m_Comm.Rank() == 0) { - preMetadataIndexFileSize = - m_FileMetadataIndexManager.GetFileSize(0); + preMetadataIndexFileSize = m_FileMetadataIndexManager.GetFileSize(0); preMetadataIndex.m_Buffer.resize(preMetadataIndexFileSize); - preMetadataIndex.m_Buffer.assign(preMetadataIndex.m_Buffer.size(), - '\0'); + preMetadataIndex.m_Buffer.assign(preMetadataIndex.m_Buffer.size(), '\0'); preMetadataIndex.m_Position = 0; - m_FileMetadataIndexManager.ReadFile( - preMetadataIndex.m_Buffer.data(), preMetadataIndexFileSize); + m_FileMetadataIndexManager.ReadFile(preMetadataIndex.m_Buffer.data(), + preMetadataIndexFileSize); } m_Comm.BroadcastVector(preMetadataIndex.m_Buffer); m_WriterStep = CountStepsInMetadataIndex(preMetadataIndex); @@ -1535,16 +1440,12 @@ void DaosWriter::InitBPBuffer() m_WriterDataPos.resize(m_Comm.Size()); } - if (!m_WriterStep || - m_AppendWriterCount != static_cast(m_Comm.Size()) || - m_AppendAggregatorCount != - static_cast(m_Aggregator->m_NumAggregators) || - m_AppendSubfileCount != - static_cast(m_Aggregator->m_SubStreams)) + if (!m_WriterStep || m_AppendWriterCount != static_cast(m_Comm.Size()) || + m_AppendAggregatorCount != static_cast(m_Aggregator->m_NumAggregators) || + m_AppendSubfileCount != static_cast(m_Aggregator->m_SubStreams)) { // new Writer Map is needed, generate now, write later - const uint64_t a = - static_cast(m_Aggregator->m_SubStreamIndex); + const uint64_t a = static_cast(m_Aggregator->m_SubStreamIndex); m_WriterSubfileMap = m_Comm.GatherValues(a, 0); } } @@ -1588,8 +1489,7 @@ void DaosWriter::FlushData(const bool isFinal) { DataBuf = m_BP5Serializer.ReinitStepData( new MallocV("DaosWriter", false, m_BP5Serializer.m_BufferAlign, - m_BP5Serializer.m_BufferBlockSize, - m_Parameters.InitialBufferSize, + m_BP5Serializer.m_BufferBlockSize, m_Parameters.InitialBufferSize, m_Parameters.GrowthFactor), m_Parameters.AsyncWrite || m_Parameters.DirectIO); } @@ -1597,8 +1497,7 @@ void DaosWriter::FlushData(const bool isFinal) { DataBuf = m_BP5Serializer.ReinitStepData( new ChunkV("DaosWriter", false, m_BP5Serializer.m_BufferAlign, - m_BP5Serializer.m_BufferBlockSize, - m_Parameters.BufferChunkSize), + m_BP5Serializer.m_BufferBlockSize, m_Parameters.BufferChunkSize), m_Parameters.AsyncWrite || m_Parameters.DirectIO); } @@ -1637,8 +1536,8 @@ void DaosWriter::DestructorClose(bool Verbose) noexcept { if (Verbose) { - std::cerr << "BP5 Writer \"" << m_Name - << "\" Destroyed without a prior Close()." << std::endl; + std::cerr << "BP5 Writer \"" << m_Name << "\" Destroyed without a prior Close()." + << std::endl; std::cerr << "This may result in corrupt output." << std::endl; } // close metadata index file @@ -1704,8 +1603,8 @@ void DaosWriter::DoClose(const int transportIndex) wait += Now() - wait_start; if (m_Comm.Rank() == 0 && m_Parameters.verbose > 0) { - std::cout << "Close waited " << wait.count() - << " seconds on async threads" << std::endl; + std::cout << "Close waited " << wait.count() << " seconds on async threads" + << std::endl; } m_Profiler.Stop("WaitOnAsync"); } @@ -1743,21 +1642,17 @@ void DaosWriter::FlushProfiler() auto transportTypesMD = m_FileMetadataManager.GetTransportsTypes(); auto transportProfilersMD = m_FileMetadataManager.GetTransportsProfilers(); - transportTypes.insert(transportTypes.end(), transportTypesMD.begin(), - transportTypesMD.end()); + transportTypes.insert(transportTypes.end(), transportTypesMD.begin(), transportTypesMD.end()); - transportProfilers.insert(transportProfilers.end(), - transportProfilersMD.begin(), + transportProfilers.insert(transportProfilers.end(), transportProfilersMD.begin(), transportProfilersMD.end()); // m_Profiler.WriteOut(transportTypes, transportProfilers); - const std::string lineJSON( - m_Profiler.GetRankProfilingJSON(transportTypes, transportProfilers) + - ",\n"); + const std::string lineJSON(m_Profiler.GetRankProfilingJSON(transportTypes, transportProfilers) + + ",\n"); - const std::vector profilingJSON( - m_Profiler.AggregateProfilingJSON(lineJSON)); + const std::vector profilingJSON(m_Profiler.AggregateProfilingJSON(lineJSON)); if (m_RankMPI == 0) { @@ -1770,15 +1665,14 @@ void DaosWriter::FlushProfiler() std::vector bpTargetNames = {m_Name}; if (fileTransportIdx > -1) { - profileFileName = - bpTargetNames[fileTransportIdx] + "/profiling.json"; + profileFileName = bpTargetNames[fileTransportIdx] + "/profiling.json"; } else { profileFileName = bpTargetNames[0] + "_profiling.json"; } - m_FileDrainer.AddOperationWrite( - profileFileName, profilingJSON.size(), profilingJSON.data()); + m_FileDrainer.AddOperationWrite(profileFileName, profilingJSON.size(), + profilingJSON.data()); } else { @@ -1788,16 +1682,14 @@ void DaosWriter::FlushProfiler() std::vector bpBaseNames = {m_Name}; if (fileTransportIdx > -1) { - profileFileName = - bpBaseNames[fileTransportIdx] + "/profiling.json"; + profileFileName = bpBaseNames[fileTransportIdx] + "/profiling.json"; } else { profileFileName = bpBaseNames[0] + "_profiling.json"; } profilingJSONStream.Open(profileFileName, Mode::Write); - profilingJSONStream.Write(profilingJSON.data(), - profilingJSON.size()); + profilingJSONStream.Write(profilingJSON.data(), profilingJSON.size()); profilingJSONStream.Close(); } } @@ -1808,8 +1700,7 @@ size_t DaosWriter::DebugGetDataBufferSize() const return m_BP5Serializer.DebugGetDataBufferSize(); } -void DaosWriter::PutCommon(VariableBase &variable, const void *values, - bool sync) +void DaosWriter::PutCommon(VariableBase &variable, const void *values, bool sync) { if (!m_BetweenStepPairs) { @@ -1868,21 +1759,18 @@ void DaosWriter::PutCommon(VariableBase &variable, const void *values, std::vector ZeroDims(DimCount); // get a temporary span then fill with memselection now format::BufferV::BufferPos bp5span(0, 0, 0); - m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), - variable.m_Type, variable.m_ElementSize, - DimCount, Shape, Count, Start, nullptr, false, - &bp5span); - void *ptr = - m_BP5Serializer.GetPtr(bp5span.bufferIdx, bp5span.posInBuffer); + m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), variable.m_Type, + variable.m_ElementSize, DimCount, Shape, Count, Start, nullptr, + false, &bp5span); + void *ptr = m_BP5Serializer.GetPtr(bp5span.bufferIdx, bp5span.posInBuffer); const bool sourceRowMajor = helper::IsRowMajor(m_IO.m_HostLanguage); - helper::NdCopy( - (const char *)values, helper::CoreDims(ZeroDims), - variable.m_MemoryCount, sourceRowMajor, false, (char *)ptr, - variable.m_MemoryStart, variable.m_Count, sourceRowMajor, false, - ObjSize, helper::CoreDims(), helper::CoreDims(), helper::CoreDims(), - helper::CoreDims(), false /* safemode */, variable.m_MemSpace); + helper::NdCopy((const char *)values, helper::CoreDims(ZeroDims), variable.m_MemoryCount, + sourceRowMajor, false, (char *)ptr, variable.m_MemoryStart, variable.m_Count, + sourceRowMajor, false, ObjSize, helper::CoreDims(), helper::CoreDims(), + helper::CoreDims(), helper::CoreDims(), false /* safemode */, + variable.m_MemSpace); } else { @@ -1890,51 +1778,46 @@ void DaosWriter::PutCommon(VariableBase &variable, const void *values, { std::string &source = *(std::string *)values; void *p = &(source[0]); - m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), - variable.m_Type, variable.m_ElementSize, - DimCount, Shape, Count, Start, &p, sync, + m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), variable.m_Type, + variable.m_ElementSize, DimCount, Shape, Count, Start, &p, sync, nullptr); } else - m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), - variable.m_Type, variable.m_ElementSize, - DimCount, Shape, Count, Start, values, sync, - nullptr); + m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), variable.m_Type, + variable.m_ElementSize, DimCount, Shape, Count, Start, values, + sync, nullptr); } } -#define declare_type(T) \ - void DaosWriter::DoPut(Variable &variable, \ - typename Variable::Span &span, \ - const bool initialize, const T &value) \ - { \ - PERFSTUBS_SCOPED_TIMER("DaosWriter::Put"); \ - PutCommonSpan(variable, span, initialize, value); \ +#define declare_type(T) \ + void DaosWriter::DoPut(Variable &variable, typename Variable::Span &span, \ + const bool initialize, const T &value) \ + { \ + PERFSTUBS_SCOPED_TIMER("DaosWriter::Put"); \ + PutCommonSpan(variable, span, initialize, value); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type -#define declare_type(T) \ - void DaosWriter::DoPutSync(Variable &variable, const T *data) \ - { \ - PutCommon(variable, data, true); \ - } \ - void DaosWriter::DoPutDeferred(Variable &variable, const T *data) \ - { \ - PutCommon(variable, data, false); \ +#define declare_type(T) \ + void DaosWriter::DoPutSync(Variable &variable, const T *data) \ + { \ + PutCommon(variable, data, true); \ + } \ + void DaosWriter::DoPutDeferred(Variable &variable, const T *data) \ + { \ + PutCommon(variable, data, false); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type -#define declare_type(T, L) \ - T *DaosWriter::DoBufferData_##L(const int bufferIdx, \ - const size_t payloadPosition, \ - const size_t bufferID) noexcept \ - { \ - return reinterpret_cast( \ - m_BP5Serializer.GetPtr(bufferIdx, payloadPosition)); \ +#define declare_type(T, L) \ + T *DaosWriter::DoBufferData_##L(const int bufferIdx, const size_t payloadPosition, \ + const size_t bufferID) noexcept \ + { \ + return reinterpret_cast(m_BP5Serializer.GetPtr(bufferIdx, payloadPosition)); \ } ADIOS2_FOREACH_PRIMITVE_STDTYPE_2ARGS(declare_type) diff --git a/source/adios2/engine/daos/DaosWriter.h b/source/adios2/engine/daos/DaosWriter.h index 3b1acbf2eb..963e98559e 100644 --- a/source/adios2/engine/daos/DaosWriter.h +++ b/source/adios2/engine/daos/DaosWriter.h @@ -28,18 +28,17 @@ #include #include -#define FAIL(fmt, ...) \ - do \ - { \ - fprintf(stderr, "Process %d(%s): " fmt " aborting\n", m_Comm.Rank(), \ - node, ##__VA_ARGS__); \ - MPI_Abort(MPI_COMM_WORLD, 1); \ +#define FAIL(fmt, ...) \ + do \ + { \ + fprintf(stderr, "Process %d(%s): " fmt " aborting\n", m_Comm.Rank(), node, ##__VA_ARGS__); \ + MPI_Abort(MPI_COMM_WORLD, 1); \ } while (0) -#define ASSERT(cond, ...) \ - do \ - { \ - if (!(cond)) \ - FAIL(__VA_ARGS__); \ +#define ASSERT(cond, ...) \ + do \ + { \ + if (!(cond)) \ + FAIL(__VA_ARGS__); \ } while (0) namespace adios2 @@ -59,13 +58,11 @@ class DaosWriter : public DaosEngine, public core::Engine * @param openMode w (supported), r, a from OpenMode in ADIOSTypes.h * @param comm multi-process communicator */ - DaosWriter(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + DaosWriter(IO &io, const std::string &name, const Mode mode, helper::Comm comm); ~DaosWriter(); - StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode, const float timeoutSeconds = -1.0) final; size_t CurrentStep() const final; void PerformPuts() final; void PerformDataWrite() final; @@ -156,16 +153,15 @@ class DaosWriter : public DaosEngine, public core::Engine /** Notify the engine when a new attribute is defined or modified. Called * from IO.tcc */ - void NotifyEngineAttribute(std::string name, AttributeBase *Attr, - void *data) noexcept; + void NotifyEngineAttribute(std::string name, AttributeBase *Attr, void *data) noexcept; void EnterComputationBlock() noexcept; /** Inform about computation block through User->ADIOS->IO */ void ExitComputationBlock() noexcept; -#define declare_type(T) \ - void DoPut(Variable &variable, typename Variable::Span &span, \ - const bool initialize, const T &value) final; +#define declare_type(T) \ + void DoPut(Variable &variable, typename Variable::Span &span, const bool initialize, \ + const T &value) final; ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type @@ -174,8 +170,8 @@ class DaosWriter : public DaosEngine, public core::Engine void PutCommonSpan(Variable &variable, typename Variable::Span &span, const bool initialize, const T &value); -#define declare_type(T) \ - void DoPutSync(Variable &, const T *) final; \ +#define declare_type(T) \ + void DoPutSync(Variable &, const T *) final; \ void DoPutDeferred(Variable &, const T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) @@ -183,8 +179,8 @@ class DaosWriter : public DaosEngine, public core::Engine void PutCommon(VariableBase &variable, const void *data, bool sync); -#define declare_type(T, L) \ - T *DoBufferData_##L(const int bufferIdx, const size_t payloadPosition, \ +#define declare_type(T, L) \ + T *DoBufferData_##L(const int bufferIdx, const size_t payloadPosition, \ const size_t bufferID = 0) noexcept final; ADIOS2_FOREACH_PRIMITVE_STDTYPE_2ARGS(declare_type) @@ -203,8 +199,7 @@ class DaosWriter : public DaosEngine, public core::Engine * profilers*/ void WriteProfilingJSONFile(); - void WriteMetaMetadata( - const std::vector MetaMetaBlocks); + void WriteMetaMetadata(const std::vector MetaMetaBlocks); void WriteMetadataFileIndex(uint64_t MetaDataPos, uint64_t MetaDataSize); @@ -213,10 +208,8 @@ class DaosWriter : public DaosEngine, public core::Engine /** Write Data to disk, in an aggregator chain */ void WriteData(format::BufferV *Data); - void WriteData_EveryoneWrites(format::BufferV *Data, - bool SerializedWriters); - void WriteData_EveryoneWrites_Async(format::BufferV *Data, - bool SerializedWriters); + void WriteData_EveryoneWrites(format::BufferV *Data, bool SerializedWriters); + void WriteData_EveryoneWrites_Async(format::BufferV *Data, bool SerializedWriters); void WriteData_TwoLevelShm(format::BufferV *Data); void WriteData_TwoLevelShm_Async(format::BufferV *Data); @@ -279,8 +272,8 @@ class DaosWriter : public DaosEngine, public core::Engine std::vector> FlushPosSizeInfo; - void MakeHeader(std::vector &buffer, size_t &position, - const std::string fileType, const bool isActive); + void MakeHeader(std::vector &buffer, size_t &position, const std::string fileType, + const bool isActive); std::vector m_WriterSubfileMap; // rank => subfile index @@ -311,7 +304,7 @@ class DaosWriter : public DaosEngine, public core::Engine TimePoint m_EndStepEnd; TimePoint m_EngineStart; TimePoint m_BeginStepStart; - bool m_flagRush; // main thread flips this in Close, async thread watches it + bool m_flagRush; // main thread flips this in Close, async thread watches it bool m_InComputationBlock = false; // main thread flips this in Clos TimePoint m_ComputationBlockStart; /* block counter and length in seconds */ @@ -321,8 +314,7 @@ class DaosWriter : public DaosEngine, public core::Engine { size_t blockID; double length; // seconds - ComputationBlockInfo(const size_t id, const double len) - : blockID(id), length(len){}; + ComputationBlockInfo(const size_t id, const double len) : blockID(id), length(len){}; }; std::vector m_ComputationBlockTimes; @@ -349,9 +341,8 @@ class DaosWriter : public DaosEngine, public core::Engine // comm-free time within deadline in seconds double computationBlocksLength; std::vector expectedComputationBlocks; // a copy - std::vector - *currentComputationBlocks; // extended by main thread - size_t *currentComputationBlockID; // increased by main thread + std::vector *currentComputationBlocks; // extended by main thread + size_t *currentComputationBlockID; // increased by main thread shm::Spinlock *lock; // race condition over currentComp* variables }; @@ -371,23 +362,20 @@ class DaosWriter : public DaosEngine, public core::Engine static int AsyncWriteThread_EveryoneWrites(AsyncWriteInfo *info); static int AsyncWriteThread_TwoLevelShm(AsyncWriteInfo *info); static void AsyncWriteThread_TwoLevelShm_Aggregator(AsyncWriteInfo *info); - static void AsyncWriteThread_TwoLevelShm_SendDataToAggregator( - aggregator::MPIShmChain *a, format::BufferV *Data); + static void AsyncWriteThread_TwoLevelShm_SendDataToAggregator(aggregator::MPIShmChain *a, + format::BufferV *Data); /* write own data used by both EveryoneWrites and TwoLevelShm async threads */ - static void AsyncWriteOwnData(AsyncWriteInfo *info, - std::vector &DataVec, - const size_t totalsize, - const bool seekOnFirstWrite); + static void AsyncWriteOwnData(AsyncWriteInfo *info, std::vector &DataVec, + const size_t totalsize, const bool seekOnFirstWrite); enum class ComputationStatus { InComp, NotInComp_ExpectMore, NoMoreComp }; - static ComputationStatus IsInComputationBlock(AsyncWriteInfo *info, - size_t &compBlockIdx); + static ComputationStatus IsInComputationBlock(AsyncWriteInfo *info, size_t &compBlockIdx); void AsyncWriteDataCleanup(); void AsyncWriteDataCleanup_EveryoneWrites(); diff --git a/source/adios2/engine/daos/DaosWriter.tcc b/source/adios2/engine/daos/DaosWriter.tcc index 9b72a65f5b..3f3cb8e80d 100644 --- a/source/adios2/engine/daos/DaosWriter.tcc +++ b/source/adios2/engine/daos/DaosWriter.tcc @@ -19,8 +19,7 @@ namespace engine { template -void DaosWriter::PutCommonSpan(Variable &variable, - typename Variable::Span &span, +void DaosWriter::PutCommonSpan(Variable &variable, typename Variable::Span &span, const bool initialize, const T &value) { format::BufferV::BufferPos bp5span(0, 0, 0); @@ -55,16 +54,14 @@ void DaosWriter::PutCommonSpan(Variable &variable, if (std::is_same::value) { - m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), - variable.m_Type, variable.m_ElementSize, - DimCount, Shape, Count, Start, nullptr, false, - &bp5span); + m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), variable.m_Type, + variable.m_ElementSize, DimCount, Shape, Count, Start, nullptr, + false, &bp5span); } else - m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), - variable.m_Type, variable.m_ElementSize, - DimCount, Shape, Count, Start, nullptr, false, - &bp5span); + m_BP5Serializer.Marshal((void *)&variable, variable.m_Name.c_str(), variable.m_Type, + variable.m_ElementSize, DimCount, Shape, Count, Start, nullptr, + false, &bp5span); span.m_PayloadPosition = bp5span.posInBuffer; span.m_BufferIdx = bp5span.bufferIdx; @@ -74,8 +71,8 @@ void DaosWriter::PutCommonSpan(Variable &variable, if (initialize) { const size_t ElemCount = m_BP5Serializer.CalcSize(DimCount, Count); - T *itBegin = reinterpret_cast( - m_BP5Serializer.GetPtr(span.m_BufferIdx, span.m_PayloadPosition)); + T *itBegin = + reinterpret_cast(m_BP5Serializer.GetPtr(span.m_BufferIdx, span.m_PayloadPosition)); // TODO from BP4: does std::fill_n have a bug in gcc or due to // optimizations this is impossible due to memory alignment? This seg diff --git a/source/adios2/engine/daos/DaosWriter_EveryoneWrites_Async.cpp b/source/adios2/engine/daos/DaosWriter_EveryoneWrites_Async.cpp index 4549ed9dc8..810eec03c8 100644 --- a/source/adios2/engine/daos/DaosWriter_EveryoneWrites_Async.cpp +++ b/source/adios2/engine/daos/DaosWriter_EveryoneWrites_Async.cpp @@ -30,8 +30,8 @@ namespace engine using namespace adios2::format; -DaosWriter::ComputationStatus -DaosWriter::IsInComputationBlock(AsyncWriteInfo *info, size_t &compBlockIdx) +DaosWriter::ComputationStatus DaosWriter::IsInComputationBlock(AsyncWriteInfo *info, + size_t &compBlockIdx) { ComputationStatus compStatus = ComputationStatus::NotInComp_ExpectMore; size_t nExpectedBlocks = info->expectedComputationBlocks.size(); @@ -54,13 +54,11 @@ DaosWriter::IsInComputationBlock(AsyncWriteInfo *info, size_t &compBlockIdx) if (inComp) { while (compBlockIdx < nExpectedBlocks && - info->expectedComputationBlocks[compBlockIdx].blockID < - compBlockID) + info->expectedComputationBlocks[compBlockIdx].blockID < compBlockID) { ++compBlockIdx; } - if (info->expectedComputationBlocks[compBlockIdx].blockID > - compBlockID) + if (info->expectedComputationBlocks[compBlockIdx].blockID > compBlockID) { // the current computation block is a short one that was not // recorded @@ -75,10 +73,8 @@ DaosWriter::IsInComputationBlock(AsyncWriteInfo *info, size_t &compBlockIdx) return compStatus; } -void DaosWriter::AsyncWriteOwnData(AsyncWriteInfo *info, - std::vector &DataVec, - const size_t totalsize, - const bool seekOnFirstWrite) +void DaosWriter::AsyncWriteOwnData(AsyncWriteInfo *info, std::vector &DataVec, + const size_t totalsize, const bool seekOnFirstWrite) { /* local variables to track variables modified by main thread */ size_t compBlockIdx = 0; /* position in vector to get length */ @@ -102,8 +98,7 @@ void DaosWriter::AsyncWriteOwnData(AsyncWriteInfo *info, if (!doRush) { - ComputationStatus compStatus = - IsInComputationBlock(info, compBlockIdx); + ComputationStatus compStatus = IsInComputationBlock(info, compBlockIdx); /* Scheduling decisions: Cases: @@ -136,10 +131,8 @@ void DaosWriter::AsyncWriteOwnData(AsyncWriteInfo *info, if (doRush) { - auto vec = std::vector(DataVec.begin() + block, - DataVec.end()); - vec[0].iov_base = - (const char *)DataVec[block].iov_base + temp_offset; + auto vec = std::vector(DataVec.begin() + block, DataVec.end()); + vec[0].iov_base = (const char *)DataVec[block].iov_base + temp_offset; vec[0].iov_len = DataVec[block].iov_len - temp_offset; size_t pos = MaxSizeT; // <==> no seek inside WriteFileAt if (firstWrite) @@ -172,15 +165,13 @@ void DaosWriter::AsyncWriteOwnData(AsyncWriteInfo *info, if (firstWrite) { - info->tm->WriteFileAt((const char *)DataVec[block].iov_base + - temp_offset, - n, info->startPos); + info->tm->WriteFileAt((const char *)DataVec[block].iov_base + temp_offset, n, + info->startPos); firstWrite = false; } else { - info->tm->WriteFiles( - (const char *)DataVec[block].iov_base + temp_offset, n); + info->tm->WriteFiles((const char *)DataVec[block].iov_base + temp_offset, n); } /* Have we processed the entire block or staying with it? */ @@ -224,34 +215,29 @@ int DaosWriter::AsyncWriteThread_EveryoneWrites(AsyncWriteInfo *info) return 1; }; -void DaosWriter::WriteData_EveryoneWrites_Async(format::BufferV *Data, - bool SerializedWriters) +void DaosWriter::WriteData_EveryoneWrites_Async(format::BufferV *Data, bool SerializedWriters) { - const aggregator::MPIChain *a = - dynamic_cast(m_Aggregator); + const aggregator::MPIChain *a = dynamic_cast(m_Aggregator); // new step writing starts at offset m_DataPos on aggregator // others will wait for the position to arrive from the rank below if (a->m_Comm.Rank() > 0) { - a->m_Comm.Recv( - &m_DataPos, 1, a->m_Comm.Rank() - 1, 0, - "Chain token in DaosWriter::WriteData_EveryoneWrites_Async"); + a->m_Comm.Recv(&m_DataPos, 1, a->m_Comm.Rank() - 1, 0, + "Chain token in DaosWriter::WriteData_EveryoneWrites_Async"); } // align to PAGE_SIZE - m_DataPos += - helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); + m_DataPos += helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); m_StartDataPos = m_DataPos; if (a->m_Comm.Rank() < a->m_Comm.Size() - 1) { uint64_t nextWriterPos = m_DataPos + Data->Size(); - a->m_Comm.Isend( - &nextWriterPos, 1, a->m_Comm.Rank() + 1, 0, - "Chain token in DaosWriter::WriteData_EveryoneWrites_Async"); + a->m_Comm.Isend(&nextWriterPos, 1, a->m_Comm.Rank() + 1, 0, + "Chain token in DaosWriter::WriteData_EveryoneWrites_Async"); } m_DataPos += Data->Size(); @@ -266,8 +252,7 @@ void DaosWriter::WriteData_EveryoneWrites_Async(format::BufferV *Data, m_AsyncWriteInfo->comm_chain = a->m_Comm.GroupByShm(); m_AsyncWriteInfo->rank_chain = m_AsyncWriteInfo->comm_chain.Rank(); m_AsyncWriteInfo->nproc_chain = m_AsyncWriteInfo->comm_chain.Size(); - m_AsyncWriteInfo->tokenChain = - new shm::TokenChain(&m_AsyncWriteInfo->comm_chain); + m_AsyncWriteInfo->tokenChain = new shm::TokenChain(&m_AsyncWriteInfo->comm_chain); } else { @@ -285,8 +270,7 @@ void DaosWriter::WriteData_EveryoneWrites_Async(format::BufferV *Data, m_AsyncWriteInfo->flagRush = &m_flagRush; m_AsyncWriteInfo->lock = &m_AsyncWriteLock; - if (m_ComputationBlocksLength > 0.0 && - m_Parameters.AsyncWrite == (int)AsyncWrite::Guided) + if (m_ComputationBlocksLength > 0.0 && m_Parameters.AsyncWrite == (int)AsyncWrite::Guided) { m_AsyncWriteInfo->inComputationBlock = &m_InComputationBlock; m_AsyncWriteInfo->computationBlocksLength = m_ComputationBlocksLength; @@ -294,10 +278,8 @@ void DaosWriter::WriteData_EveryoneWrites_Async(format::BufferV *Data, { m_AsyncWriteInfo->deadline = m_ComputationBlocksLength; } - m_AsyncWriteInfo->expectedComputationBlocks = - m_ComputationBlockTimes; // copy! - m_AsyncWriteInfo->currentComputationBlocks = - &m_ComputationBlockTimes; // ptr! + m_AsyncWriteInfo->expectedComputationBlocks = m_ComputationBlockTimes; // copy! + m_AsyncWriteInfo->currentComputationBlocks = &m_ComputationBlockTimes; // ptr! m_AsyncWriteInfo->currentComputationBlockID = &m_ComputationBlockID; /* Clear current block tracker now so that async thread does not get @@ -318,8 +300,8 @@ void DaosWriter::WriteData_EveryoneWrites_Async(format::BufferV *Data, m_AsyncWriteInfo->currentComputationBlockID = nullptr; } - m_WriteFuture = std::async( - std::launch::async, AsyncWriteThread_EveryoneWrites, m_AsyncWriteInfo); + m_WriteFuture = + std::async(std::launch::async, AsyncWriteThread_EveryoneWrites, m_AsyncWriteInfo); // At this point modifying Data in main thread is prohibited !!! @@ -335,9 +317,8 @@ void DaosWriter::WriteData_EveryoneWrites_Async(format::BufferV *Data, } if (a->m_Comm.Rank() == 0) { - a->m_Comm.Recv( - &m_DataPos, 1, a->m_Comm.Size() - 1, 0, - "Chain token in DaosWriter::WriteData_EveryoneWrites_Async"); + a->m_Comm.Recv(&m_DataPos, 1, a->m_Comm.Size() - 1, 0, + "Chain token in DaosWriter::WriteData_EveryoneWrites_Async"); } } } diff --git a/source/adios2/engine/daos/DaosWriter_TwoLevelShm.cpp b/source/adios2/engine/daos/DaosWriter_TwoLevelShm.cpp index 9ef11dd74b..e3c23cef26 100644 --- a/source/adios2/engine/daos/DaosWriter_TwoLevelShm.cpp +++ b/source/adios2/engine/daos/DaosWriter_TwoLevelShm.cpp @@ -32,16 +32,14 @@ using namespace adios2::format; void DaosWriter::WriteData_TwoLevelShm(format::BufferV *Data) { - aggregator::MPIShmChain *a = - dynamic_cast(m_Aggregator); + aggregator::MPIShmChain *a = dynamic_cast(m_Aggregator); // new step writing starts at offset m_DataPos on master aggregator // other aggregators to the same file will need to wait for the position // to arrive from the rank below // align to PAGE_SIZE (only valid on master aggregator at this point) - m_DataPos += - helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); + m_DataPos += helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); // Each aggregator needs to know the total size they write // This calculation is valid on aggregators only @@ -64,8 +62,7 @@ void DaosWriter::WriteData_TwoLevelShm(format::BufferV *Data) { alignment_size = m_Parameters.DirectIOAlignOffset; } - a->CreateShm(static_cast(maxSize), m_Parameters.MaxShmSize, - alignment_size); + a->CreateShm(static_cast(maxSize), m_Parameters.MaxShmSize, alignment_size); } shm::TokenChain tokenChain(&a->m_Comm); @@ -80,26 +77,22 @@ void DaosWriter::WriteData_TwoLevelShm(format::BufferV *Data) &m_DataPos, 1, a->m_AggregatorChainComm.Rank() - 1, 0, "AggregatorChain token in DaosWriter::WriteData_TwoLevelShm"); // align to PAGE_SIZE - m_DataPos += helper::PaddingToAlignOffset(m_DataPos, - m_Parameters.StripeSize); + m_DataPos += helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); } m_StartDataPos = m_DataPos; // metadata needs this info - if (a->m_AggregatorChainComm.Rank() < - a->m_AggregatorChainComm.Size() - 1) + if (a->m_AggregatorChainComm.Rank() < a->m_AggregatorChainComm.Size() - 1) { uint64_t nextWriterPos = m_DataPos + myTotalSize; - a->m_AggregatorChainComm.Isend( - &nextWriterPos, 1, a->m_AggregatorChainComm.Rank() + 1, 0, - "Chain token in DaosWriter::WriteData"); + a->m_AggregatorChainComm.Isend(&nextWriterPos, 1, a->m_AggregatorChainComm.Rank() + 1, + 0, "Chain token in DaosWriter::WriteData"); } else if (a->m_AggregatorChainComm.Size() > 1) { // send back final position from last aggregator in file to master // aggregator uint64_t nextWriterPos = m_DataPos + myTotalSize; - a->m_AggregatorChainComm.Isend( - &nextWriterPos, 1, 0, 0, - "Chain token in DaosWriter::WriteData"); + a->m_AggregatorChainComm.Isend(&nextWriterPos, 1, 0, 0, + "Chain token in DaosWriter::WriteData"); } /*std::cout << "Rank " << m_Comm.Rank() @@ -123,12 +116,10 @@ void DaosWriter::WriteData_TwoLevelShm(format::BufferV *Data) // Master aggregator needs to know where the last writing ended by the // last aggregator in the chain, so that it can start from the correct // position at the next output step - if (a->m_AggregatorChainComm.Size() > 1 && - !a->m_AggregatorChainComm.Rank()) + if (a->m_AggregatorChainComm.Size() > 1 && !a->m_AggregatorChainComm.Rank()) { - a->m_AggregatorChainComm.Recv( - &m_DataPos, 1, a->m_AggregatorChainComm.Size() - 1, 0, - "Chain token in DaosWriter::WriteData"); + a->m_AggregatorChainComm.Recv(&m_DataPos, 1, a->m_AggregatorChainComm.Size() - 1, 0, + "Chain token in DaosWriter::WriteData"); } } else @@ -157,8 +148,7 @@ void DaosWriter::WriteMyOwnData(format::BufferV *Data) { std::vector DataVec = Data->DataVec(); m_StartDataPos = m_DataPos; - m_FileDataManager.WriteFileAt(DataVec.data(), DataVec.size(), - m_StartDataPos); + m_FileDataManager.WriteFileAt(DataVec.data(), DataVec.size(), m_StartDataPos); m_DataPos += Data->Size(); } @@ -191,8 +181,7 @@ void DaosWriter::SendDataToAggregator(format::BufferV *Data) between the two segments. */ - aggregator::MPIShmChain *a = - dynamic_cast(m_Aggregator); + aggregator::MPIShmChain *a = dynamic_cast(m_Aggregator); std::vector DataVec = Data->DataVec(); size_t nBlocks = DataVec.size(); @@ -262,8 +251,7 @@ void DaosWriter::SendDataToAggregator(format::BufferV *Data) void DaosWriter::WriteOthersData(size_t TotalSize) { /* Only an Aggregator calls this function */ - aggregator::MPIShmChain *a = - dynamic_cast(m_Aggregator); + aggregator::MPIShmChain *a = dynamic_cast(m_Aggregator); size_t wrote = 0; while (wrote < TotalSize) diff --git a/source/adios2/engine/daos/DaosWriter_TwoLevelShm_Async.cpp b/source/adios2/engine/daos/DaosWriter_TwoLevelShm_Async.cpp index 4c632ff3ff..34a88d9ba0 100644 --- a/source/adios2/engine/daos/DaosWriter_TwoLevelShm_Async.cpp +++ b/source/adios2/engine/daos/DaosWriter_TwoLevelShm_Async.cpp @@ -36,8 +36,7 @@ using namespace adios2::format; */ void DaosWriter::AsyncWriteThread_TwoLevelShm_Aggregator(AsyncWriteInfo *info) { - aggregator::MPIShmChain *a = - dynamic_cast(info->aggregator); + aggregator::MPIShmChain *a = dynamic_cast(info->aggregator); uint64_t totalSize = info->totalSize; /* Write own data first */ @@ -71,8 +70,8 @@ void DaosWriter::AsyncWriteThread_TwoLevelShm_Aggregator(AsyncWriteInfo *info) tokenChain in caller ensures only one process (per aggregator chain) is running this function at a time */ -void DaosWriter::AsyncWriteThread_TwoLevelShm_SendDataToAggregator( - aggregator::MPIShmChain *a, format::BufferV *Data) +void DaosWriter::AsyncWriteThread_TwoLevelShm_SendDataToAggregator(aggregator::MPIShmChain *a, + format::BufferV *Data) { /* In a loop, copy the local data into the shared memory, alternating between the two segments. @@ -138,8 +137,7 @@ int DaosWriter::AsyncWriteThread_TwoLevelShm(AsyncWriteInfo *info) Seconds ts = Now() - info->tstart; // std::cout << "ASYNC rank " << info->rank_global // << " starts at: " << ts.count() << std::endl; - aggregator::MPIShmChain *a = - dynamic_cast(info->aggregator); + aggregator::MPIShmChain *a = dynamic_cast(info->aggregator); if (a->m_IsAggregator) { // Send token to first non-aggregator to start filling shm @@ -169,16 +167,14 @@ int DaosWriter::AsyncWriteThread_TwoLevelShm(AsyncWriteInfo *info) void DaosWriter::WriteData_TwoLevelShm_Async(format::BufferV *Data) { - aggregator::MPIShmChain *a = - dynamic_cast(m_Aggregator); + aggregator::MPIShmChain *a = dynamic_cast(m_Aggregator); // new step writing starts at offset m_DataPos on master aggregator // other aggregators to the same file will need to wait for the position // to arrive from the rank below // align to PAGE_SIZE (only valid on master aggregator at this point) - m_DataPos += - helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); + m_DataPos += helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); // Each aggregator needs to know the total size they write // This calculation is valid on aggregators only @@ -201,8 +197,7 @@ void DaosWriter::WriteData_TwoLevelShm_Async(format::BufferV *Data) { alignment_size = m_Parameters.DirectIOAlignOffset; } - a->CreateShm(static_cast(maxSize), m_Parameters.MaxShmSize, - alignment_size); + a->CreateShm(static_cast(maxSize), m_Parameters.MaxShmSize, alignment_size); } if (a->m_IsAggregator) @@ -215,26 +210,22 @@ void DaosWriter::WriteData_TwoLevelShm_Async(format::BufferV *Data) &m_DataPos, 1, a->m_AggregatorChainComm.Rank() - 1, 0, "AggregatorChain token in DaosWriter::WriteData_TwoLevelShm"); // align to PAGE_SIZE - m_DataPos += helper::PaddingToAlignOffset(m_DataPos, - m_Parameters.StripeSize); + m_DataPos += helper::PaddingToAlignOffset(m_DataPos, m_Parameters.StripeSize); } m_StartDataPos = m_DataPos; // metadata needs this info - if (a->m_AggregatorChainComm.Rank() < - a->m_AggregatorChainComm.Size() - 1) + if (a->m_AggregatorChainComm.Rank() < a->m_AggregatorChainComm.Size() - 1) { uint64_t nextWriterPos = m_DataPos + myTotalSize; - a->m_AggregatorChainComm.Isend( - &nextWriterPos, 1, a->m_AggregatorChainComm.Rank() + 1, 0, - "Chain token in DaosWriter::WriteData"); + a->m_AggregatorChainComm.Isend(&nextWriterPos, 1, a->m_AggregatorChainComm.Rank() + 1, + 0, "Chain token in DaosWriter::WriteData"); } else if (a->m_AggregatorChainComm.Size() > 1) { // send back final position from last aggregator in file to master // aggregator uint64_t nextWriterPos = m_DataPos + myTotalSize; - a->m_AggregatorChainComm.Isend( - &nextWriterPos, 1, 0, 0, - "Chain token in DaosWriter::WriteData"); + a->m_AggregatorChainComm.Isend(&nextWriterPos, 1, 0, 0, + "Chain token in DaosWriter::WriteData"); } // Master aggregator needs to know where the last writing ended by the @@ -244,9 +235,8 @@ void DaosWriter::WriteData_TwoLevelShm_Async(format::BufferV *Data) { if (a->m_AggregatorChainComm.Size() > 1) { - a->m_AggregatorChainComm.Recv( - &m_DataPos, 1, a->m_AggregatorChainComm.Size() - 1, 0, - "Chain token in DaosWriter::WriteData"); + a->m_AggregatorChainComm.Recv(&m_DataPos, 1, a->m_AggregatorChainComm.Size() - 1, 0, + "Chain token in DaosWriter::WriteData"); } else { @@ -296,8 +286,7 @@ void DaosWriter::WriteData_TwoLevelShm_Async(format::BufferV *Data) m_AsyncWriteInfo->totalSize = myTotalSize; m_AsyncWriteInfo->deadline = m_ExpectedTimeBetweenSteps.count(); - if (m_ComputationBlocksLength > 0.0 && - m_Parameters.AsyncWrite == (int)AsyncWrite::Guided) + if (m_ComputationBlocksLength > 0.0 && m_Parameters.AsyncWrite == (int)AsyncWrite::Guided) { m_AsyncWriteInfo->inComputationBlock = &m_InComputationBlock; m_AsyncWriteInfo->computationBlocksLength = m_ComputationBlocksLength; @@ -305,10 +294,8 @@ void DaosWriter::WriteData_TwoLevelShm_Async(format::BufferV *Data) { m_AsyncWriteInfo->deadline = m_ComputationBlocksLength; } - m_AsyncWriteInfo->expectedComputationBlocks = - m_ComputationBlockTimes; // copy! - m_AsyncWriteInfo->currentComputationBlocks = - &m_ComputationBlockTimes; // ptr! + m_AsyncWriteInfo->expectedComputationBlocks = m_ComputationBlockTimes; // copy! + m_AsyncWriteInfo->currentComputationBlocks = &m_ComputationBlockTimes; // ptr! m_AsyncWriteInfo->currentComputationBlockID = &m_ComputationBlockID; /* Clear current block tracker now so that async thread does not get @@ -329,8 +316,7 @@ void DaosWriter::WriteData_TwoLevelShm_Async(format::BufferV *Data) m_AsyncWriteInfo->currentComputationBlockID = nullptr; } - m_WriteFuture = std::async(std::launch::async, AsyncWriteThread_TwoLevelShm, - m_AsyncWriteInfo); + m_WriteFuture = std::async(std::launch::async, AsyncWriteThread_TwoLevelShm, m_AsyncWriteInfo); /* At this point it is prohibited in the main thread - to modify Data, which will be deleted in the async thread any tiume diff --git a/source/adios2/engine/dataman/DataManMonitor.cpp b/source/adios2/engine/dataman/DataManMonitor.cpp index cbcc178bd8..69273cdc2e 100644 --- a/source/adios2/engine/dataman/DataManMonitor.cpp +++ b/source/adios2/engine/dataman/DataManMonitor.cpp @@ -21,25 +21,16 @@ namespace core namespace engine { -void DataManMonitor::SetAverageSteps(const size_t step) -{ - m_AverageSteps = step; -} +void DataManMonitor::SetAverageSteps(const size_t step) { m_AverageSteps = step; } -void DataManMonitor::SetCombiningSteps(const size_t step) -{ - m_CombiningSteps = step; -} +void DataManMonitor::SetCombiningSteps(const size_t step) { m_CombiningSteps = step; } -void DataManMonitor::SetClockError(const uint64_t roundLatency, - const uint64_t remoteTimeBase) +void DataManMonitor::SetClockError(const uint64_t roundLatency, const uint64_t remoteTimeBase) { - uint64_t localTimeBase = - std::chrono::duration_cast( - std::chrono::system_clock::now().time_since_epoch()) - .count(); - m_ClockError = localTimeBase - remoteTimeBase - - static_cast(roundLatency) / 2.0; + uint64_t localTimeBase = std::chrono::duration_cast( + std::chrono::system_clock::now().time_since_epoch()) + .count(); + m_ClockError = localTimeBase - remoteTimeBase - static_cast(roundLatency) / 2.0; m_RoundLatency = roundLatency; } @@ -70,10 +61,9 @@ void DataManMonitor::BeginStep(const size_t step) void DataManMonitor::AddLatencyMilliseconds(const uint64_t remoteStamp) { - uint64_t localStamp = - std::chrono::duration_cast( - std::chrono::system_clock::now().time_since_epoch()) - .count(); + uint64_t localStamp = std::chrono::duration_cast( + std::chrono::system_clock::now().time_since_epoch()) + .count(); uint64_t latency = localStamp - remoteStamp - m_ClockError; m_LatencyMilliseconds.push_back(latency); m_AccumulatedLatency += latency; @@ -102,11 +92,9 @@ void DataManMonitor::EndStep(const size_t step) m_AverageTime = std::chrono::duration_cast( (m_StepTimers.back() - m_StepTimers.front())) .count(); - m_TotalRate = static_cast(m_TotalBytes.back()) / - static_cast(m_TotalTime); - m_AverageRate = - static_cast(m_TotalBytes.back() - m_TotalBytes.front()) / - static_cast(m_AverageTime); + m_TotalRate = static_cast(m_TotalBytes.back()) / static_cast(m_TotalTime); + m_AverageRate = static_cast(m_TotalBytes.back() - m_TotalBytes.front()) / + static_cast(m_AverageTime); if (step > 0) { m_DropRate = static_cast((step - m_CurrentStep)) / step; @@ -127,23 +115,17 @@ void DataManMonitor::EndStep(const size_t step) { std::lock_guard l(m_PrintMutex); std::cout << "Step " << step << ", Total MBs " - << static_cast(m_TotalBytes.back()) / 1000000.0 - << ", Step MBs " - << static_cast(m_StepBytes) / 1000000.0 - << ", Total seconds " - << static_cast(m_TotalTime) / 1000000.0 << ", " - << m_StepTimers.size() << " step seconds " - << static_cast(m_AverageTime) / 1000000.0 - << ", Total MB/s " << m_TotalRate << ", " - << m_StepTimers.size() << " step average MB/s " - << m_AverageRate << ", Drop rate " << m_DropRate * 100 << "%" - << ", Steps per second " << m_StepsPerSecond << ", " - << m_StepTimers.size() + << static_cast(m_TotalBytes.back()) / 1000000.0 << ", Step MBs " + << static_cast(m_StepBytes) / 1000000.0 << ", Total seconds " + << static_cast(m_TotalTime) / 1000000.0 << ", " << m_StepTimers.size() + << " step seconds " << static_cast(m_AverageTime) / 1000000.0 + << ", Total MB/s " << m_TotalRate << ", " << m_StepTimers.size() + << " step average MB/s " << m_AverageRate << ", Drop rate " << m_DropRate * 100 + << "%" + << ", Steps per second " << m_StepsPerSecond << ", " << m_StepTimers.size() << " step average latency milliseconds " << averageLatency << ", Average latency milliseconds " - << m_AccumulatedLatency / - static_cast(m_CurrentStep + 1) - << std::endl; + << m_AccumulatedLatency / static_cast(m_CurrentStep + 1) << std::endl; } } @@ -161,8 +143,7 @@ void DataManMonitor::SetRequiredAccuracy(const std::string &accuracyRequired) } } -void DataManMonitor::AddCompression(const std::string &method, - const std::string &accuracyUsed) +void DataManMonitor::AddCompression(const std::string &method, const std::string &accuracyUsed) { m_CompressionMethod = method; @@ -172,10 +153,7 @@ void DataManMonitor::AddCompression(const std::string &method, } } -void DataManMonitor::AddTransport(const std::string &method) -{ - m_TransportMethod = method; -} +void DataManMonitor::AddTransport(const std::string &method) { m_TransportMethod = method; } void DataManMonitor::SetReaderThreading() { m_ReaderThreading = true; } @@ -207,8 +185,7 @@ void DataManMonitor::OutputJson(const std::string &filename) bool fileExists = FileExisted(filename + ".json"); - std::ofstream file((filename + ".json").c_str(), - std::fstream::out | std::fstream::app); + std::ofstream file((filename + ".json").c_str(), std::fstream::out | std::fstream::app); if (!fileExists) { file << "ADOPS2 DataMan performance measurements" << std::endl; @@ -220,8 +197,7 @@ void DataManMonitor::OutputJson(const std::string &filename) void DataManMonitor::OutputCsv(const std::string &filename) { bool fileExists = FileExisted(filename + ".csv"); - std::ofstream file((filename + ".csv").c_str(), - std::fstream::out | std::fstream::app); + std::ofstream file((filename + ".csv").c_str(), std::fstream::out | std::fstream::app); if (!fileExists) { file << "bandwidth, latency, precision, completeness, size, " @@ -229,10 +205,7 @@ void DataManMonitor::OutputCsv(const std::string &filename) << std::endl; } file << floor(log2(m_TotalRate)) << ", "; - file << floor(log2(m_AccumulatedLatency / - static_cast(m_CurrentStep + 1))) - - 8 - << ", "; + file << floor(log2(m_AccumulatedLatency / static_cast(m_CurrentStep + 1))) - 8 << ", "; if (m_RequiredAccuracy == 0) { file << 0 << ", "; @@ -260,8 +233,7 @@ void DataManMonitor::OutputCsv(const std::string &filename) { file << round(log10(m_CompressionAccuracy)) + 6 << ", "; } - file << static_cast(m_WriterThreading) * 2 + - static_cast(m_ReaderThreading) + file << static_cast(m_WriterThreading) * 2 + static_cast(m_ReaderThreading) << std::endl; file.close(); } diff --git a/source/adios2/engine/dataman/DataManMonitor.h b/source/adios2/engine/dataman/DataManMonitor.h index 9a95cf496d..1c2ad250d5 100644 --- a/source/adios2/engine/dataman/DataManMonitor.h +++ b/source/adios2/engine/dataman/DataManMonitor.h @@ -34,10 +34,8 @@ class DataManMonitor void SetCombiningSteps(const size_t steps); void SetWriterThreading(); void SetReaderThreading(); - void SetClockError(const uint64_t roundLatency, - const uint64_t remoteTimeBase); - void AddCompression(const std::string &method, - const std::string &accuracyUsed); + void SetClockError(const uint64_t roundLatency, const uint64_t remoteTimeBase); + void AddCompression(const std::string &method, const std::string &accuracyUsed); void SetRequiredAccuracy(const std::string &accuracyRequired); void AddTransport(const std::string &method); void OutputJson(const std::string &filename); diff --git a/source/adios2/engine/dataman/DataManReader.cpp b/source/adios2/engine/dataman/DataManReader.cpp index c268a128aa..eea2542a6a 100644 --- a/source/adios2/engine/dataman/DataManReader.cpp +++ b/source/adios2/engine/dataman/DataManReader.cpp @@ -18,12 +18,12 @@ namespace core namespace engine { -DataManReader::DataManReader(IO &io, const std::string &name, - const Mode openMode, helper::Comm comm) +DataManReader::DataManReader(IO &io, const std::string &name, const Mode openMode, + helper::Comm comm) : Engine("DataManReader", io, name, openMode, std::move(comm)), m_FinalStep(std::numeric_limits::max()), - m_Serializer(m_Comm, (io.m_ArrayOrder == ArrayOrdering::RowMajor)), - m_RequesterThreadActive(true), m_SubscriberThreadActive(true) + m_Serializer(m_Comm, (io.m_ArrayOrder == ArrayOrdering::RowMajor)), m_RequesterThreadActive(true), + m_SubscriberThreadActive(true) { m_MpiRank = m_Comm.Rank(); m_MpiSize = m_Comm.Size(); @@ -33,11 +33,10 @@ DataManReader::DataManReader(IO &io, const std::string &name, helper::GetParameter(m_IO.m_Parameters, "Verbose", m_Verbosity); helper::GetParameter(m_IO.m_Parameters, "Threading", m_Threading); helper::GetParameter(m_IO.m_Parameters, "Monitor", m_MonitorActive); - helper::GetParameter(m_IO.m_Parameters, "MaxStepBufferSize", - m_ReceiverBufferSize); + helper::GetParameter(m_IO.m_Parameters, "MaxStepBufferSize", m_ReceiverBufferSize); - helper::Log("Engine", "DataManReader", "Open", m_Name, 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "DataManReader", "Open", m_Name, 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); if (m_IPAddress.empty()) { @@ -45,27 +44,24 @@ DataManReader::DataManReader(IO &io, const std::string &name, "IP address not specified"); } - std::string requesterAddress = - "tcp://" + m_IPAddress + ":" + std::to_string(m_Port); - std::string subscriberAddress = - "tcp://" + m_IPAddress + ":" + std::to_string(m_Port + 1); - m_Requester.OpenRequester(requesterAddress, m_Timeout, - m_ReceiverBufferSize); + std::string requesterAddress = "tcp://" + m_IPAddress + ":" + std::to_string(m_Port); + std::string subscriberAddress = "tcp://" + m_IPAddress + ":" + std::to_string(m_Port + 1); + m_Requester.OpenRequester(requesterAddress, m_Timeout, m_ReceiverBufferSize); auto timeBeforeRequest = std::chrono::system_clock::now(); auto reply = m_Requester.Request("Handshake", 9); auto timeAfterRequest = std::chrono::system_clock::now(); - auto roundLatency = std::chrono::duration_cast( - timeAfterRequest - timeBeforeRequest) - .count(); + auto roundLatency = + std::chrono::duration_cast(timeAfterRequest - timeBeforeRequest) + .count(); while (reply == nullptr or reply->empty()) { timeBeforeRequest = std::chrono::system_clock::now(); reply = m_Requester.Request("Handshake", 9); timeAfterRequest = std::chrono::system_clock::now(); - roundLatency = std::chrono::duration_cast( - timeAfterRequest - timeBeforeRequest) + roundLatency = std::chrono::duration_cast(timeAfterRequest - + timeBeforeRequest) .count(); } @@ -123,12 +119,10 @@ DataManReader::~DataManReader() } } -StepStatus DataManReader::BeginStep(StepMode stepMode, - const float timeoutSeconds) +StepStatus DataManReader::BeginStep(StepMode stepMode, const float timeoutSeconds) { - helper::Log("Engine", "DataManReader", "BeginStep", - std::to_string(CurrentStep()), 0, m_Comm.Rank(), 5, m_Verbosity, - helper::LogMode::INFO); + helper::Log("Engine", "DataManReader", "BeginStep", std::to_string(CurrentStep()), 0, + m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); float timeout = timeoutSeconds; @@ -140,20 +134,18 @@ StepStatus DataManReader::BeginStep(StepMode stepMode, if (m_CurrentStep >= m_FinalStep and m_CurrentStep >= 0) { helper::Log("Engine", "DataManReader", "BeginStep", - "EndOfStream, final step is " + std::to_string(m_FinalStep), - 0, m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); + "EndOfStream, final step is " + std::to_string(m_FinalStep), 0, m_Comm.Rank(), + 5, m_Verbosity, helper::LogMode::INFO); return StepStatus::EndOfStream; } - m_CurrentStepMetadata = - m_Serializer.GetEarliestLatestStep(m_CurrentStep, 1, timeout, false); + m_CurrentStepMetadata = m_Serializer.GetEarliestLatestStep(m_CurrentStep, 1, timeout, false); if (m_CurrentStepMetadata == nullptr) { - helper::Log("Engine", "DataManReader", "BeginStep", - "EndOfStream due to timeout", 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "DataManReader", "BeginStep", "EndOfStream due to timeout", 0, + m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); return StepStatus::EndOfStream; } @@ -167,21 +159,19 @@ StepStatus DataManReader::BeginStep(StepMode stepMode, { if (i.type == DataType::None) { - helper::Throw("Engine", "DataManReader", - "BeginStep", + helper::Throw("Engine", "DataManReader", "BeginStep", "invalid data type"); } -#define declare_type(T) \ - else if (i.type == helper::GetDataType()) \ - { \ - CheckIOVariable(i.name, i.shape, i.start, i.count); \ +#define declare_type(T) \ + else if (i.type == helper::GetDataType()) \ + { \ + CheckIOVariable(i.name, i.shape, i.start, i.count); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type else { - helper::Throw("Engine", "DataManReader", - "BeginStep", + helper::Throw("Engine", "DataManReader", "BeginStep", "invalid data type"); } } @@ -315,28 +305,28 @@ void DataManReader::SubscribeThread() } } -#define declare_type(T) \ - void DataManReader::DoGetSync(Variable &variable, T *data) \ - { \ - helper::Log("Engine", "DataManReader", "GetSync", variable.m_Name, 0, \ - m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); \ - GetSyncCommon(variable, data); \ - } \ - void DataManReader::DoGetDeferred(Variable &variable, T *data) \ - { \ - helper::Log("Engine", "DataManReader", "GetDeferred", variable.m_Name, \ - 0, m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); \ - GetDeferredCommon(variable, data); \ - } \ - std::map::BPInfo>> \ - DataManReader::DoAllStepsBlocksInfo(const Variable &variable) const \ - { \ - return AllStepsBlocksInfoCommon(variable); \ - } \ - std::vector::BPInfo> DataManReader::DoBlocksInfo( \ - const Variable &variable, const size_t step) const \ - { \ - return BlocksInfoCommon(variable, step); \ +#define declare_type(T) \ + void DataManReader::DoGetSync(Variable &variable, T *data) \ + { \ + helper::Log("Engine", "DataManReader", "GetSync", variable.m_Name, 0, m_Comm.Rank(), 5, \ + m_Verbosity, helper::LogMode::INFO); \ + GetSyncCommon(variable, data); \ + } \ + void DataManReader::DoGetDeferred(Variable &variable, T *data) \ + { \ + helper::Log("Engine", "DataManReader", "GetDeferred", variable.m_Name, 0, m_Comm.Rank(), \ + 5, m_Verbosity, helper::LogMode::INFO); \ + GetDeferredCommon(variable, data); \ + } \ + std::map::BPInfo>> \ + DataManReader::DoAllStepsBlocksInfo(const Variable &variable) const \ + { \ + return AllStepsBlocksInfoCommon(variable); \ + } \ + std::vector::BPInfo> DataManReader::DoBlocksInfo( \ + const Variable &variable, const size_t step) const \ + { \ + return BlocksInfoCommon(variable, step); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/dataman/DataManReader.h b/source/adios2/engine/dataman/DataManReader.h index f99e3b5181..299a0bc7a4 100644 --- a/source/adios2/engine/dataman/DataManReader.h +++ b/source/adios2/engine/dataman/DataManReader.h @@ -30,8 +30,7 @@ class DataManReader : public Engine { public: - DataManReader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + DataManReader(IO &io, const std::string &name, const Mode mode, helper::Comm comm); virtual ~DataManReader(); StepStatus BeginStep(StepMode stepMode, const float timeoutSeconds) final; size_t CurrentStep() const final; @@ -79,13 +78,13 @@ class DataManReader : public Engine */ void DestructorClose(bool Verbose) noexcept final{}; -#define declare_type(T) \ - void DoGetSync(Variable &, T *) final; \ - void DoGetDeferred(Variable &, T *) final; \ - std::map::BPInfo>> \ - DoAllStepsBlocksInfo(const Variable &variable) const final; \ - std::vector::BPInfo> DoBlocksInfo( \ - const Variable &variable, const size_t step) const final; +#define declare_type(T) \ + void DoGetSync(Variable &, T *) final; \ + void DoGetDeferred(Variable &, T *) final; \ + std::map::BPInfo>> DoAllStepsBlocksInfo( \ + const Variable &variable) const final; \ + std::vector::BPInfo> DoBlocksInfo(const Variable &variable, \ + const size_t step) const final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -104,12 +103,12 @@ class DataManReader : public Engine AllStepsBlocksInfoCommon(const Variable &variable) const; template - std::vector::BPInfo> - BlocksInfoCommon(const Variable &variable, const size_t step) const; + std::vector::BPInfo> BlocksInfoCommon(const Variable &variable, + const size_t step) const; template - void CheckIOVariable(const std::string &name, const Dims &shape, - const Dims &start, const Dims &count); + void CheckIOVariable(const std::string &name, const Dims &shape, const Dims &start, + const Dims &count); }; } // end namespace engine diff --git a/source/adios2/engine/dataman/DataManReader.tcc b/source/adios2/engine/dataman/DataManReader.tcc index cf176209da..7b44c8cbbd 100644 --- a/source/adios2/engine/dataman/DataManReader.tcc +++ b/source/adios2/engine/dataman/DataManReader.tcc @@ -35,9 +35,9 @@ void DataManReader::GetDeferredCommon(Variable &variable, T *data) { while (true) { - int ret = m_Serializer.GetData( - data, variable.m_Name, variable.m_Start, variable.m_Count, - m_CurrentStep, variable.m_MemoryStart, variable.m_MemoryCount); + int ret = + m_Serializer.GetData(data, variable.m_Name, variable.m_Start, variable.m_Count, + m_CurrentStep, variable.m_MemoryStart, variable.m_MemoryCount); if (ret == 0) { break; @@ -56,8 +56,8 @@ void DataManReader::GetDeferredCommon(Variable &variable, T *data) std::reverse(memcount.begin(), memcount.end()); while (true) { - int ret = m_Serializer.GetData(data, variable.m_Name, start, count, - m_CurrentStep, memstart, memcount); + int ret = m_Serializer.GetData(data, variable.m_Name, start, count, m_CurrentStep, + memstart, memcount); if (ret == 0) { break; @@ -67,9 +67,8 @@ void DataManReader::GetDeferredCommon(Variable &variable, T *data) if (m_MonitorActive) { - m_Monitor.AddBytes(std::accumulate(variable.m_Count.begin(), - variable.m_Count.end(), sizeof(T), - std::multiplies())); + m_Monitor.AddBytes(std::accumulate(variable.m_Count.begin(), variable.m_Count.end(), + sizeof(T), std::multiplies())); } } @@ -82,8 +81,7 @@ DataManReader::AllStepsBlocksInfoCommon(const Variable &variable) const template std::vector::BPInfo> -DataManReader::BlocksInfoCommon(const Variable &variable, - const size_t step) const +DataManReader::BlocksInfoCommon(const Variable &variable, const size_t step) const { std::vector::BPInfo> v; T max = std::numeric_limits::min(); @@ -120,8 +118,8 @@ DataManReader::BlocksInfoCommon(const Variable &variable, } template -void DataManReader::CheckIOVariable(const std::string &name, const Dims &shape, - const Dims &start, const Dims &count) +void DataManReader::CheckIOVariable(const std::string &name, const Dims &shape, const Dims &start, + const Dims &count) { bool singleValue = false; if (shape.size() == 1 and start.size() == 1 and count.size() == 1) @@ -164,21 +162,20 @@ void DataManReader::CheckIOVariable(const std::string &name, const Dims &shape, template <> inline void DataManReader::AccumulateMinMax>( - std::complex &min, std::complex &max, - const std::vector &minVec, const std::vector &maxVec) const + std::complex &min, std::complex &max, const std::vector &minVec, + const std::vector &maxVec) const { } template <> inline void DataManReader::AccumulateMinMax>( - std::complex &min, std::complex &max, - const std::vector &minVec, const std::vector &maxVec) const + std::complex &min, std::complex &max, const std::vector &minVec, + const std::vector &maxVec) const { } template -void DataManReader::AccumulateMinMax(T &min, T &max, - const std::vector &minVec, +void DataManReader::AccumulateMinMax(T &min, T &max, const std::vector &minVec, const std::vector &maxVec) const { T maxInMetadata = reinterpret_cast(maxVec.data())[0]; diff --git a/source/adios2/engine/dataman/DataManWriter.cpp b/source/adios2/engine/dataman/DataManWriter.cpp index 5cc95578c6..b4f122b133 100644 --- a/source/adios2/engine/dataman/DataManWriter.cpp +++ b/source/adios2/engine/dataman/DataManWriter.cpp @@ -17,11 +17,11 @@ namespace core namespace engine { -DataManWriter::DataManWriter(IO &io, const std::string &name, - const Mode openMode, helper::Comm comm) +DataManWriter::DataManWriter(IO &io, const std::string &name, const Mode openMode, + helper::Comm comm) : Engine("DataManWriter", io, name, openMode, std::move(comm)), m_SentSteps(0), - m_Serializer(m_Comm, (io.m_ArrayOrder == ArrayOrdering::RowMajor)), - m_ReplyThreadActive(true), m_PublishThreadActive(true) + m_Serializer(m_Comm, (io.m_ArrayOrder == ArrayOrdering::RowMajor)), m_ReplyThreadActive(true), + m_PublishThreadActive(true) { m_MpiRank = m_Comm.Rank(); @@ -29,24 +29,22 @@ DataManWriter::DataManWriter(IO &io, const std::string &name, if (m_MpiSize > 1) { - helper::Throw("Engine", "DataManWriter", "Open", - m_Name, m_Comm.Rank()); + helper::Throw("Engine", "DataManWriter", "Open", m_Name, m_Comm.Rank()); } helper::GetParameter(m_IO.m_Parameters, "IPAddress", m_IPAddress); helper::GetParameter(m_IO.m_Parameters, "Port", m_Port); helper::GetParameter(m_IO.m_Parameters, "Timeout", m_Timeout); helper::GetParameter(m_IO.m_Parameters, "Verbose", m_Verbosity); - helper::GetParameter(m_IO.m_Parameters, "RendezvousReaderCount", - m_RendezvousReaderCount); + helper::GetParameter(m_IO.m_Parameters, "RendezvousReaderCount", m_RendezvousReaderCount); helper::GetParameter(m_IO.m_Parameters, "Threading", m_Threading); helper::GetParameter(m_IO.m_Parameters, "TransportMode", m_TransportMode); helper::GetParameter(m_IO.m_Parameters, "Monitor", m_MonitorActive); helper::GetParameter(m_IO.m_Parameters, "CombiningSteps", m_CombiningSteps); helper::GetParameter(m_IO.m_Parameters, "FloatAccuracy", m_FloatAccuracy); - helper::Log("Engine", "DataManWriter", "Open", m_Name, 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "DataManWriter", "Open", m_Name, 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); m_HandshakeJson["Threading"] = m_Threading; m_HandshakeJson["Transport"] = m_TransportMode; @@ -70,10 +68,8 @@ DataManWriter::DataManWriter(IO &io, const std::string &name, } } - std::string replierAddress = - "tcp://" + m_IPAddress + ":" + std::to_string(m_Port); - std::string publisherAddress = - "tcp://" + m_IPAddress + ":" + std::to_string(m_Port + 1); + std::string replierAddress = "tcp://" + m_IPAddress + ":" + std::to_string(m_Port); + std::string publisherAddress = "tcp://" + m_IPAddress + ":" + std::to_string(m_Port + 1); if (m_TransportMode == "fast") { @@ -132,14 +128,12 @@ StepStatus DataManWriter::BeginStep(StepMode mode, const float timeout_sec) m_Monitor.BeginStep(m_CurrentStep); } - helper::Log("Engine", "DataManWriter", "BeginStep", - std::to_string(CurrentStep()), 0, m_Comm.Rank(), 5, m_Verbosity, - helper::LogMode::INFO); + helper::Log("Engine", "DataManWriter", "BeginStep", std::to_string(CurrentStep()), 0, + m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); - m_Serializer.AttachTimeStamp( - std::chrono::duration_cast( - std::chrono::system_clock::now().time_since_epoch()) - .count()); + m_Serializer.AttachTimeStamp(std::chrono::duration_cast( + std::chrono::system_clock::now().time_since_epoch()) + .count()); return StepStatus::OK; } @@ -150,9 +144,8 @@ void DataManWriter::PerformPuts() {} void DataManWriter::EndStep() { - helper::Log("Engine", "DataManWriter", "EndStep", - std::to_string(CurrentStep()), 0, m_Comm.Rank(), 5, m_Verbosity, - helper::LogMode::INFO); + helper::Log("Engine", "DataManWriter", "EndStep", std::to_string(CurrentStep()), 0, + m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); if (m_CurrentStep == 0) { @@ -191,26 +184,26 @@ void DataManWriter::Flush(const int transportIndex) {} // PRIVATE functions below -#define declare_type(T) \ - void DataManWriter::DoPutSync(Variable &variable, const T *values) \ - { \ - helper::Log("Engine", "DataManWriter", "PutSync", variable.m_Name, 0, \ - m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); \ - PutSyncCommon(variable, values); \ - } \ - void DataManWriter::DoPutDeferred(Variable &variable, const T *values) \ - { \ - helper::Log("Engine", "DataManWriter", "PutDeferred", variable.m_Name, \ - 0, m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); \ - PutDeferredCommon(variable, values); \ +#define declare_type(T) \ + void DataManWriter::DoPutSync(Variable &variable, const T *values) \ + { \ + helper::Log("Engine", "DataManWriter", "PutSync", variable.m_Name, 0, m_Comm.Rank(), 5, \ + m_Verbosity, helper::LogMode::INFO); \ + PutSyncCommon(variable, values); \ + } \ + void DataManWriter::DoPutDeferred(Variable &variable, const T *values) \ + { \ + helper::Log("Engine", "DataManWriter", "PutDeferred", variable.m_Name, 0, m_Comm.Rank(), \ + 5, m_Verbosity, helper::LogMode::INFO); \ + PutDeferredCommon(variable, values); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type void DataManWriter::DoClose(const int transportIndex) { - helper::Log("Engine", "DataManWriter", "Close", m_Name, 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "DataManWriter", "Close", m_Name, 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); if (m_CombinedSteps < m_CombiningSteps && m_CombinedSteps > 0) { diff --git a/source/adios2/engine/dataman/DataManWriter.h b/source/adios2/engine/dataman/DataManWriter.h index 5638a81806..2bd704e5b7 100644 --- a/source/adios2/engine/dataman/DataManWriter.h +++ b/source/adios2/engine/dataman/DataManWriter.h @@ -29,12 +29,10 @@ class DataManWriter : public Engine { public: - DataManWriter(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + DataManWriter(IO &io, const std::string &name, const Mode mode, helper::Comm comm); virtual ~DataManWriter(); - StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode, const float timeoutSeconds = -1.0) final; size_t CurrentStep() const; void PerformPuts() final; void EndStep() final; @@ -83,8 +81,8 @@ class DataManWriter : public Engine void ReplyThread(); void PublishThread(); -#define declare_type(T) \ - void DoPutSync(Variable &, const T *) final; \ +#define declare_type(T) \ + void DoPutSync(Variable &, const T *) final; \ void DoPutDeferred(Variable &, const T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/dataman/DataManWriter.tcc b/source/adios2/engine/dataman/DataManWriter.tcc index 02c1e39aea..fb96f948ef 100644 --- a/source/adios2/engine/dataman/DataManWriter.tcc +++ b/source/adios2/engine/dataman/DataManWriter.tcc @@ -48,16 +48,14 @@ void DataManWriter::PutDeferredCommon(Variable &variable, const T *values) std::reverse(shape.begin(), shape.end()); std::reverse(memstart.begin(), memstart.end()); std::reverse(memcount.begin(), memcount.end()); - m_Serializer.PutData(variable.m_Data, variable.m_Name, shape, start, - count, memstart, memcount, m_Name, CurrentStep(), - m_MpiRank, "", variable.m_Operations); + m_Serializer.PutData(variable.m_Data, variable.m_Name, shape, start, count, memstart, + memcount, m_Name, CurrentStep(), m_MpiRank, "", variable.m_Operations); } if (m_MonitorActive) { - m_Monitor.AddBytes(std::accumulate(variable.m_Count.begin(), - variable.m_Count.end(), sizeof(T), - std::multiplies())); + m_Monitor.AddBytes(std::accumulate(variable.m_Count.begin(), variable.m_Count.end(), + sizeof(T), std::multiplies())); } } diff --git a/source/adios2/engine/dataspaces/DataSpacesReader.cpp b/source/adios2/engine/dataspaces/DataSpacesReader.cpp index 30e49f9543..eb1ca0a8de 100644 --- a/source/adios2/engine/dataspaces/DataSpacesReader.cpp +++ b/source/adios2/engine/dataspaces/DataSpacesReader.cpp @@ -29,8 +29,8 @@ namespace core namespace engine { -DataSpacesReader::DataSpacesReader(IO &io, const std::string &name, - const Mode mode, helper::Comm comm) +DataSpacesReader::DataSpacesReader(IO &io, const std::string &name, const Mode mode, + helper::Comm comm) : Engine("DataSpacesReader", io, name, mode, std::move(comm)) { @@ -49,8 +49,7 @@ DataSpacesReader::DataSpacesReader(IO &io, const std::string &name, m_data.appid = 0; } auto latest = m_IO.m_Parameters.find("AlwaysProvideLatestTimestep"); - if (latest != m_IO.m_Parameters.end() && - (latest->second == "yes" || latest->second == "true")) + if (latest != m_IO.m_Parameters.end() && (latest->second == "yes" || latest->second == "true")) { m_ProvideLatest = true; } @@ -113,13 +112,11 @@ StepStatus DataSpacesReader::BeginStep(StepMode mode, const float timeout_sec) char meta_str[256]; unsigned int metalen; snprintf(meta_str, sizeof(meta_str), "VARMETA@%s", fstr); - int err = dspaces_get_meta(*client, meta_str, META_MODE_NEXT, - m_CurrentStep, &bcast_array[1], - (void **)&buffer, &metalen); + int err = dspaces_get_meta(*client, meta_str, META_MODE_NEXT, m_CurrentStep, + &bcast_array[1], (void **)&buffer, &metalen); bcast_array[0] = metalen; #else - buffer = dspaces_get_next_meta(m_CurrentStep, fstr, &bcast_array[0], - &bcast_array[1]); + buffer = dspaces_get_next_meta(m_CurrentStep, fstr, &bcast_array[0], &bcast_array[1]); #endif /* HAVE_DSPACES2 */ } } @@ -132,21 +129,19 @@ StepStatus DataSpacesReader::BeginStep(StepMode mode, const float timeout_sec) char meta_str[256]; unsigned int metalen; snprintf(meta_str, sizeof(meta_str), "VARMETA@%s", fstr); - int err = dspaces_get_meta(*client, meta_str, META_MODE_LAST, - m_CurrentStep, &bcast_array[1], - (void **)&buffer, &metalen); + int err = dspaces_get_meta(*client, meta_str, META_MODE_LAST, m_CurrentStep, + &bcast_array[1], (void **)&buffer, &metalen); bcast_array[0] = metalen; #else - buffer = dspaces_get_latest_meta(m_CurrentStep, fstr, - &bcast_array[0], &bcast_array[1]); + buffer = dspaces_get_latest_meta(m_CurrentStep, fstr, &bcast_array[0], &bcast_array[1]); #endif /* HAVE_DSPACES2 */ } } MPI_Bcast(bcast_array, 2, MPI_INT, 0, m_data.mpi_comm); int buf_len = bcast_array[0]; int var_name_max_length = 128; - nVars = (buf_len) / (2 * sizeof(int) + MAX_DS_NDIM * sizeof(uint64_t) + - var_name_max_length * sizeof(char)); + nVars = (buf_len) / + (2 * sizeof(int) + MAX_DS_NDIM * sizeof(uint64_t) + var_name_max_length * sizeof(char)); m_CurrentStep = bcast_array[1]; if (nVars == 0) return StepStatus::EndOfStream; @@ -167,8 +162,7 @@ StepStatus DataSpacesReader::BeginStep(StepMode mode, const float timeout_sec) memcpy(dim_meta, buffer, nVars * sizeof(int)); memcpy(elemSize_meta, &buffer[nVars * sizeof(int)], nVars * sizeof(int)); - memcpy(gdim_meta, &buffer[2 * nVars * sizeof(int)], - MAX_DS_NDIM * nVars * sizeof(uint64_t)); + memcpy(gdim_meta, &buffer[2 * nVars * sizeof(int)], MAX_DS_NDIM * nVars * sizeof(uint64_t)); for (int var = 0; var < nVars; ++var) { @@ -180,8 +174,7 @@ StepStatus DataSpacesReader::BeginStep(StepMode mode, const float timeout_sec) char *val = (char *)(calloc(var_name_max_length, sizeof(char))); memcpy(val, &buffer[nVars * sizeof(int) + nVars * sizeof(int) + - nVars * MAX_DS_NDIM * sizeof(uint64_t) + - var * var_name_max_length], + nVars * MAX_DS_NDIM * sizeof(uint64_t) + var * var_name_max_length], var_name_max_length * sizeof(char)); adiosName.assign(val); free(val); @@ -190,8 +183,7 @@ StepStatus DataSpacesReader::BeginStep(StepMode mode, const float timeout_sec) shape.resize(var_dim_size); if (var_dim_size > 0) { - bool isOrderC = - m_IO.m_ArrayOrder == adios2::ArrayOrdering::RowMajor; + bool isOrderC = m_IO.m_ArrayOrder == adios2::ArrayOrdering::RowMajor; for (int i = 0; i < var_dim_size; i++) { if (isOrderC) @@ -201,8 +193,7 @@ StepStatus DataSpacesReader::BeginStep(StepMode mode, const float timeout_sec) } else { - shape[i] = - static_cast(gdim_meta[var * MAX_DS_NDIM + i]); + shape[i] = static_cast(gdim_meta[var * MAX_DS_NDIM + i]); ; } } @@ -211,8 +202,7 @@ StepStatus DataSpacesReader::BeginStep(StepMode mode, const float timeout_sec) auto itType = ds_to_varType.find(varType); if (itType == ds_to_varType.end()) { - fprintf(stderr, - "Wrong value in the serialized meta buffer for varType\n"); + fprintf(stderr, "Wrong value in the serialized meta buffer for varType\n"); } else { @@ -285,14 +275,14 @@ void DataSpacesReader::PerformGets() { if (m_DeferredStack.size() > 0) { -#define declare_type(T) \ - for (std::string variableName : m_DeferredStack) \ - { \ - Variable *var = m_IO.InquireVariable(variableName); \ - if (var != nullptr) \ - { \ - ReadDsData(*var, var->GetData(), m_CurrentStep); \ - } \ +#define declare_type(T) \ + for (std::string variableName : m_DeferredStack) \ + { \ + Variable *var = m_IO.InquireVariable(variableName); \ + if (var != nullptr) \ + { \ + ReadDsData(*var, var->GetData(), m_CurrentStep); \ + } \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -300,14 +290,14 @@ void DataSpacesReader::PerformGets() } } -#define declare_type(T) \ - void DataSpacesReader::DoGetSync(Variable &variable, T *data) \ - { \ - GetSyncCommon(variable, data); \ - } \ - void DataSpacesReader::DoGetDeferred(Variable &variable, T *data) \ - { \ - GetDeferredCommon(variable, data); \ +#define declare_type(T) \ + void DataSpacesReader::DoGetSync(Variable &variable, T *data) \ + { \ + GetSyncCommon(variable, data); \ + } \ + void DataSpacesReader::DoGetDeferred(Variable &variable, T *data) \ + { \ + GetDeferredCommon(variable, data); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) diff --git a/source/adios2/engine/dataspaces/DataSpacesReader.h b/source/adios2/engine/dataspaces/DataSpacesReader.h index c4315ea91e..5479b5151c 100644 --- a/source/adios2/engine/dataspaces/DataSpacesReader.h +++ b/source/adios2/engine/dataspaces/DataSpacesReader.h @@ -30,14 +30,12 @@ class DataSpacesReader : public Engine { public: - DataSpacesReader(IO &adios, const std::string &name, const Mode openMode, - helper::Comm comm); + DataSpacesReader(IO &adios, const std::string &name, const Mode openMode, helper::Comm comm); ~DataSpacesReader(); StepStatus BeginStep(); - StepStatus BeginStep( - StepMode mode, - const float timeoutSeconds = std::numeric_limits::max()) final; + StepStatus BeginStep(StepMode mode, + const float timeoutSeconds = std::numeric_limits::max()) final; size_t CurrentStep() const final; void EndStep() final; @@ -73,15 +71,14 @@ class DataSpacesReader : public Engine }; */ const std::map ds_to_varType = { - {1, "int8_t"}, {2, "uint8_t"}, {3, "int16_t"}, - {4, "uint16_t"}, {5, "int32_t"}, {6, "uint32_t"}, - {7, "int64_t"}, {8, "uint64_t"}, {9, "float"}, - {10, "double"}, {11, "long double"}, {12, "complex float"}, + {1, "int8_t"}, {2, "uint8_t"}, {3, "int16_t"}, {4, "uint16_t"}, + {5, "int32_t"}, {6, "uint32_t"}, {7, "int64_t"}, {8, "uint64_t"}, + {9, "float"}, {10, "double"}, {11, "long double"}, {12, "complex float"}, {13, "complex double"}, {14, "string"}, }; -#define declare_type(T) \ - void DoGetSync(Variable &, T *) final; \ +#define declare_type(T) \ + void DoGetSync(Variable &, T *) final; \ void DoGetDeferred(Variable &, T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/dataspaces/DataSpacesReader.tcc b/source/adios2/engine/dataspaces/DataSpacesReader.tcc index 4d0846d657..00b844135f 100644 --- a/source/adios2/engine/dataspaces/DataSpacesReader.tcc +++ b/source/adios2/engine/dataspaces/DataSpacesReader.tcc @@ -87,13 +87,10 @@ void DataSpacesReader::ReadDsData(Variable &variable, T *data, int version) { for (int i = 0; i < ndims; i++) { - gdims_in[i] = - static_cast(variable.m_Shape[ndims - i - 1]); - lb_in[i] = - static_cast(variable.m_Start[ndims - i - 1]); - ub_in[i] = - static_cast(variable.m_Start[ndims - i - 1] + - variable.m_Count[ndims - i - 1] - 1); + gdims_in[i] = static_cast(variable.m_Shape[ndims - i - 1]); + lb_in[i] = static_cast(variable.m_Start[ndims - i - 1]); + ub_in[i] = static_cast(variable.m_Start[ndims - i - 1] + + variable.m_Count[ndims - i - 1] - 1); } } else @@ -103,8 +100,7 @@ void DataSpacesReader::ReadDsData(Variable &variable, T *data, int version) { gdims_in[i] = static_cast(variable.m_Shape[i]); lb_in[i] = static_cast(variable.m_Start[i]); - ub_in[i] = static_cast(variable.m_Start[i] + - variable.m_Count[i] - 1); + ub_in[i] = static_cast(variable.m_Start[i] + variable.m_Count[i] - 1); } } } @@ -120,12 +116,11 @@ void DataSpacesReader::ReadDsData(Variable &variable, T *data, int version) #ifdef HAVE_DSPACES2 dspaces_client_t *client = get_client_handle(); dspaces_define_gdim(*client, var_str, ndims, gdims_in); - dspaces_get(*client, var_str, version, variable.m_ElementSize, ndims, lb_in, - ub_in, (void *)data, -1); + dspaces_get(*client, var_str, version, variable.m_ElementSize, ndims, lb_in, ub_in, + (void *)data, -1); #else dspaces_define_gdim(var_str, ndims, gdims_in); - dspaces_get(var_str, version, variable.m_ElementSize, ndims, lb_in, ub_in, - (void *)data); + dspaces_get(var_str, version, variable.m_ElementSize, ndims, lb_in, ub_in, (void *)data); #endif /* HAVE_DSPACES2 */ delete[] cstr; delete[] var_str; diff --git a/source/adios2/engine/dataspaces/DataSpacesWriter.cpp b/source/adios2/engine/dataspaces/DataSpacesWriter.cpp index ebef50fc76..f45fe823ec 100644 --- a/source/adios2/engine/dataspaces/DataSpacesWriter.cpp +++ b/source/adios2/engine/dataspaces/DataSpacesWriter.cpp @@ -30,8 +30,8 @@ namespace core namespace engine { -DataSpacesWriter::DataSpacesWriter(IO &io, const std::string &name, - const Mode mode, helper::Comm comm) +DataSpacesWriter::DataSpacesWriter(IO &io, const std::string &name, const Mode mode, + helper::Comm comm) : Engine("DataSpacesWriter", io, name, mode, std::move(comm)) { @@ -128,15 +128,14 @@ void DataSpacesWriter::DoClose(const int transportIndex) void DataSpacesWriter::PerformPuts() {} -#define declare_type(T) \ - void DataSpacesWriter::DoPutSync(Variable &variable, const T *values) \ - { \ - DoPutSyncCommon(variable, values); \ - } \ - void DataSpacesWriter::DoPutDeferred(Variable &variable, \ - const T *values) \ - { \ - DoPutSyncCommon(variable, values); \ +#define declare_type(T) \ + void DataSpacesWriter::DoPutSync(Variable &variable, const T *values) \ + { \ + DoPutSyncCommon(variable, values); \ + } \ + void DataSpacesWriter::DoPutDeferred(Variable &variable, const T *values) \ + { \ + DoPutSyncCommon(variable, values); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -157,19 +156,16 @@ void DataSpacesWriter::WriteVarInfo() std::string ds_file_var; int var_num = ndim_vector.size(); int var_name_max_length = 128; - int buf_len = - var_num * (2 * sizeof(int) + MAX_DS_NDIM * sizeof(uint64_t) + - var_name_max_length * sizeof(char)); + int buf_len = var_num * (2 * sizeof(int) + MAX_DS_NDIM * sizeof(uint64_t) + + var_name_max_length * sizeof(char)); int *dim_meta, *elemSize_meta; uint64_t *gdim_meta; dim_meta = (int *)malloc(var_num * sizeof(int)); elemSize_meta = (int *)malloc(var_num * sizeof(int)); - gdim_meta = - (uint64_t *)malloc(MAX_DS_NDIM * var_num * sizeof(uint64_t)); + gdim_meta = (uint64_t *)malloc(MAX_DS_NDIM * var_num * sizeof(uint64_t)); memset(gdim_meta, 0, MAX_DS_NDIM * var_num * sizeof(uint64_t)); buffer = (char *)malloc(buf_len); - name_string = - (char *)malloc(var_num * var_name_max_length * sizeof(char)); + name_string = (char *)malloc(var_num * var_name_max_length * sizeof(char)); for (nvars = 0; nvars < var_num; ++nvars) { char *cstr = new char[v_name_vector.at(nvars).length() + 1]; @@ -188,12 +184,10 @@ void DataSpacesWriter::WriteVarInfo() } // copy all the data into payload buffer memcpy(buffer, dim_meta, var_num * sizeof(int)); - memcpy(&buffer[var_num * sizeof(int)], elemSize_meta, - var_num * sizeof(int)); + memcpy(&buffer[var_num * sizeof(int)], elemSize_meta, var_num * sizeof(int)); memcpy(&buffer[2 * var_num * sizeof(int)], gdim_meta, MAX_DS_NDIM * var_num * sizeof(uint64_t)); - memcpy(&buffer[2 * var_num * sizeof(int) + - MAX_DS_NDIM * var_num * sizeof(uint64_t)], + memcpy(&buffer[2 * var_num * sizeof(int) + MAX_DS_NDIM * var_num * sizeof(uint64_t)], name_string, var_num * var_name_max_length * sizeof(char)); // store metadata in DataSoaces diff --git a/source/adios2/engine/dataspaces/DataSpacesWriter.h b/source/adios2/engine/dataspaces/DataSpacesWriter.h index 370ba87102..a60bf2d805 100644 --- a/source/adios2/engine/dataspaces/DataSpacesWriter.h +++ b/source/adios2/engine/dataspaces/DataSpacesWriter.h @@ -37,14 +37,12 @@ class DataSpacesWriter : public Engine * @param comm * @param method */ - DataSpacesWriter(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + DataSpacesWriter(IO &io, const std::string &name, const Mode mode, helper::Comm comm); ~DataSpacesWriter(); - StepStatus BeginStep( - StepMode mode, - const float timeoutSeconds = std::numeric_limits::max()) final; + StepStatus BeginStep(StepMode mode, + const float timeoutSeconds = std::numeric_limits::max()) final; size_t CurrentStep() const final; void EndStep() final; @@ -60,10 +58,9 @@ class DataSpacesWriter : public Engine std::vector v_name_vector; std::vector elemSize_vector; const std::map varType_to_ds = { - {"int8_t", 1}, {"uint8_t", 2}, {"int16_t", 3}, - {"uint16_t", 4}, {"int32_t", 5}, {"uint32_t", 6}, - {"int64_t", 7}, {"uint64_t", 8}, {"float", 9}, - {"double", 10}, {"long double", 11}, {"complex float", 12}, + {"int8_t", 1}, {"uint8_t", 2}, {"int16_t", 3}, {"uint16_t", 4}, + {"int32_t", 5}, {"uint32_t", 6}, {"int64_t", 7}, {"uint64_t", 8}, + {"float", 9}, {"double", 10}, {"long double", 11}, {"complex float", 12}, {"complex double", 13}, {"string", 14}, }; /* @@ -88,8 +85,8 @@ class DataSpacesWriter : public Engine }; */ -#define declare_type(T) \ - void DoPutSync(Variable &variable, const T *values) final; \ +#define declare_type(T) \ + void DoPutSync(Variable &variable, const T *values) final; \ void DoPutDeferred(Variable &variable, const T *values) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/dataspaces/DataSpacesWriter.tcc b/source/adios2/engine/dataspaces/DataSpacesWriter.tcc index 3c460164db..a4c4079e30 100644 --- a/source/adios2/engine/dataspaces/DataSpacesWriter.tcc +++ b/source/adios2/engine/dataspaces/DataSpacesWriter.tcc @@ -72,14 +72,11 @@ void DataSpacesWriter::DoPutSyncCommon(Variable &variable, const T *values) { for (int i = 0; i < ndims; i++) { - gdims_in[i] = - static_cast(variable.m_Shape[ndims - i - 1]); + gdims_in[i] = static_cast(variable.m_Shape[ndims - i - 1]); dims_vec.push_back(gdims_in[i]); - lb_in[i] = - static_cast(variable.m_Start[ndims - i - 1]); - ub_in[i] = - static_cast(variable.m_Start[ndims - i - 1] + - variable.m_Count[ndims - i - 1] - 1); + lb_in[i] = static_cast(variable.m_Start[ndims - i - 1]); + ub_in[i] = static_cast(variable.m_Start[ndims - i - 1] + + variable.m_Count[ndims - i - 1] - 1); } } else @@ -90,8 +87,7 @@ void DataSpacesWriter::DoPutSyncCommon(Variable &variable, const T *values) gdims_in[i] = static_cast(variable.m_Shape[i]); dims_vec.push_back(gdims_in[i]); lb_in[i] = static_cast(variable.m_Start[i]); - ub_in[i] = static_cast(variable.m_Start[i] + - variable.m_Count[i] - 1); + ub_in[i] = static_cast(variable.m_Start[i] + variable.m_Count[i] - 1); } } } @@ -123,12 +119,10 @@ void DataSpacesWriter::DoPutSyncCommon(Variable &variable, const T *values) #ifdef HAVE_DSPACES2 dspaces_client_t *client = get_client_handle(); dspaces_define_gdim(*client, var_str, ndims, gdims_in); - dspaces_put(*client, var_str, version, variable.m_ElementSize, ndims, lb_in, - ub_in, values); + dspaces_put(*client, var_str, version, variable.m_ElementSize, ndims, lb_in, ub_in, values); #else dspaces_define_gdim(var_str, ndims, gdims_in); - dspaces_put(var_str, version, variable.m_ElementSize, ndims, lb_in, ub_in, - values); + dspaces_put(var_str, version, variable.m_ElementSize, ndims, lb_in, ub_in, values); dspaces_put_sync(); dspaces_put_sync(); #endif /* HAVE_DSPACES2 */ diff --git a/source/adios2/engine/hdf5/HDF5ReaderP.cpp b/source/adios2/engine/hdf5/HDF5ReaderP.cpp index 17149c9ac8..cd39481fdf 100644 --- a/source/adios2/engine/hdf5/HDF5ReaderP.cpp +++ b/source/adios2/engine/hdf5/HDF5ReaderP.cpp @@ -22,23 +22,21 @@ namespace core namespace engine { -#define CHECK_H5_RETURN(returnCode, reason) \ - { \ - if (returnCode < 0) \ - { \ - helper::Throw("Engine", "HDF5ReaderP", \ - "CHECK_H5_RETURN", reason); \ - } \ +#define CHECK_H5_RETURN(returnCode, reason) \ + { \ + if (returnCode < 0) \ + { \ + helper::Throw("Engine", "HDF5ReaderP", "CHECK_H5_RETURN", reason); \ + } \ } -HDF5ReaderP::HDF5ReaderP(IO &io, const std::string &name, const Mode openMode, - helper::Comm comm) +HDF5ReaderP::HDF5ReaderP(IO &io, const std::string &name, const Mode openMode, helper::Comm comm) : Engine("HDF5Reader", io, name, openMode, std::move(comm)) { if (!helper::IsHDF5File(name, io, m_Comm, {})) { - helper::Throw( - "Engine", "HDF5ReaderP", "HDF5ReaderP", "Invalid HDF5 file found"); + helper::Throw("Engine", "HDF5ReaderP", "HDF5ReaderP", + "Invalid HDF5 file found"); } Init(); @@ -70,10 +68,9 @@ void HDF5ReaderP::Init() { if (m_OpenMode != Mode::Read) { - helper::Throw( - "Engine", "HDF5ReaderP", "Init", - "HDF5Reader only supports OpenMode::Read " - ", in call to Open"); + helper::Throw("Engine", "HDF5ReaderP", "Init", + "HDF5Reader only supports OpenMode::Read " + ", in call to Open"); } m_H5File.Init(m_Name, m_Comm, false); @@ -104,8 +101,7 @@ void HDF5ReaderP::Init() // returns slab size (>0) (datasize read in) // returns -1 to advise do not continue template -size_t HDF5ReaderP::ReadDataset(hid_t dataSetId, hid_t h5Type, - Variable &variable, T *values) +size_t HDF5ReaderP::ReadDataset(hid_t dataSetId, hid_t h5Type, Variable &variable, T *values) { /* size_t variableStart = variable.m_StepsStart; @@ -158,8 +154,7 @@ size_t HDF5ReaderP::ReadDataset(hid_t dataSetId, hid_t h5Type, } else { - hid_t ret = H5Dread(dataSetId, h5Type, H5S_ALL, H5S_ALL, - H5P_DEFAULT, values); + hid_t ret = H5Dread(dataSetId, h5Type, H5S_ALL, H5S_ALL, H5P_DEFAULT, values); CHECK_H5_RETURN(ret, "ReadDataset, H5Dread"); } } @@ -183,8 +178,8 @@ size_t HDF5ReaderP::ReadDataset(hid_t dataSetId, hid_t h5Type, slabsize *= count[i]; stride[i] = 1; } - hid_t ret = H5Sselect_hyperslab(fileSpace, H5S_SELECT_SET, start.data(), - stride.data(), count.data(), NULL); + hid_t ret = H5Sselect_hyperslab(fileSpace, H5S_SELECT_SET, start.data(), stride.data(), + count.data(), NULL); if (ret < 0) return 0; @@ -199,8 +194,7 @@ size_t HDF5ReaderP::ReadDataset(hid_t dataSetId, hid_t h5Type, if (H5Tget_class(h5Type) != H5T_STRING) { - ret = H5Dread(dataSetId, h5Type, memDataSpace, fileSpace, - H5P_DEFAULT, values); + ret = H5Dread(dataSetId, h5Type, memDataSpace, fileSpace, H5P_DEFAULT, values); // H5Sclose(memDataSpace); } else if (1 == elementsRead) @@ -209,8 +203,7 @@ size_t HDF5ReaderP::ReadDataset(hid_t dataSetId, hid_t h5Type, size_t typesize = H5Tget_size(h5Type); char *val = (char *)(calloc(typesize, sizeof(char))); - H5Dread(dataSetId, h5Type, memDataSpace, fileSpace, H5P_DEFAULT, - val); + H5Dread(dataSetId, h5Type, memDataSpace, fileSpace, H5P_DEFAULT, val); ((std::string *)values)->assign(val, typesize); free(val); @@ -232,8 +225,7 @@ void HDF5ReaderP::UseHDFRead(Variable &variable, T *data, hid_t h5Type) if (found != std::string::npos) { std::string h5name = variable.m_Name.substr(0, found); - hid_t dataSetId = - H5Dopen(m_H5File.m_FileId, h5name.c_str(), H5P_DEFAULT); + hid_t dataSetId = H5Dopen(m_H5File.m_FileId, h5name.c_str(), H5P_DEFAULT); if (dataSetId < 0) return; interop::HDF5TypeGuard g_ds(dataSetId, interop::E_H5_DATASET); @@ -243,8 +235,7 @@ void HDF5ReaderP::UseHDFRead(Variable &variable, T *data, hid_t h5Type) else { // UseHDFReadNativeFile(variable, data, h5Type); - hid_t dataSetId = H5Dopen(m_H5File.m_FileId, - variable.m_Name.c_str(), H5P_DEFAULT); + hid_t dataSetId = H5Dopen(m_H5File.m_FileId, variable.m_Name.c_str(), H5P_DEFAULT); if (dataSetId < 0) { return; @@ -357,24 +348,24 @@ void HDF5ReaderP::EndStep() void HDF5ReaderP::PerformGets() { -#define declare_type(T) \ - for (std::string variableName : m_DeferredStack) \ - { \ - const DataType type = m_IO.InquireVariableType(variableName); \ - if (type == helper::GetDataType()) \ - { \ - Variable *var = m_IO.InquireVariable(variableName); \ - if (var != nullptr) \ - { \ - if (m_InStreamMode) \ - { \ - var->m_StepsStart = m_StreamAt; \ - var->m_StepsCount = 1; \ - } \ - hid_t h5Type = m_H5File.GetHDF5Type(); \ - UseHDFRead(*var, var->GetData(), h5Type); \ - } \ - } \ +#define declare_type(T) \ + for (std::string variableName : m_DeferredStack) \ + { \ + const DataType type = m_IO.InquireVariableType(variableName); \ + if (type == helper::GetDataType()) \ + { \ + Variable *var = m_IO.InquireVariable(variableName); \ + if (var != nullptr) \ + { \ + if (m_InStreamMode) \ + { \ + var->m_StepsStart = m_StreamAt; \ + var->m_StepsCount = 1; \ + } \ + hid_t h5Type = m_H5File.GetHDF5Type(); \ + UseHDFRead(*var, var->GetData(), h5Type); \ + } \ + } \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -386,27 +377,24 @@ void HDF5ReaderP::PerformGets() m_DeferredStack.clear(); } -#define declare_type(T) \ - void HDF5ReaderP::DoGetSync(Variable &variable, T *data) \ - { \ - GetSyncCommon(variable, data); \ - } \ - \ - void HDF5ReaderP::DoGetDeferred(Variable &variable, T *data) \ - { \ - GetDeferredCommon(variable, data); \ - } \ - \ - std::map::BPInfo>> \ - HDF5ReaderP::DoAllStepsBlocksInfo(const Variable &variable) const \ - { \ - return GetAllStepsBlocksInfo(variable); \ - } \ - \ - std::vector::BPInfo> HDF5ReaderP::DoBlocksInfo( \ - const Variable &variable, const size_t step) const \ - { \ - return GetBlocksInfo(variable, step); \ +#define declare_type(T) \ + void HDF5ReaderP::DoGetSync(Variable &variable, T *data) { GetSyncCommon(variable, data); } \ + \ + void HDF5ReaderP::DoGetDeferred(Variable &variable, T *data) \ + { \ + GetDeferredCommon(variable, data); \ + } \ + \ + std::map::BPInfo>> HDF5ReaderP::DoAllStepsBlocksInfo( \ + const Variable &variable) const \ + { \ + return GetAllStepsBlocksInfo(variable); \ + } \ + \ + std::vector::BPInfo> HDF5ReaderP::DoBlocksInfo( \ + const Variable &variable, const size_t step) const \ + { \ + return GetBlocksInfo(variable, step); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) diff --git a/source/adios2/engine/hdf5/HDF5ReaderP.h b/source/adios2/engine/hdf5/HDF5ReaderP.h index 560916206b..67941c72f6 100644 --- a/source/adios2/engine/hdf5/HDF5ReaderP.h +++ b/source/adios2/engine/hdf5/HDF5ReaderP.h @@ -37,15 +37,13 @@ class HDF5ReaderP : public Engine * @param comm * @param method */ - HDF5ReaderP(IO &adios, const std::string &name, const Mode openMode, - helper::Comm comm); + HDF5ReaderP(IO &adios, const std::string &name, const Mode openMode, helper::Comm comm); ~HDF5ReaderP(); bool IsValid(); - StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode, const float timeoutSeconds = -1.0) final; size_t CurrentStep() const final; void EndStep() final; @@ -55,25 +53,23 @@ class HDF5ReaderP : public Engine interop::HDF5Common m_H5File; void Init() final; - bool m_InStreamMode = - false; // default is not streaming, i.e. set var timestep range + bool m_InStreamMode = false; // default is not streaming, i.e. set var timestep range unsigned int m_StreamAt = 0; // stream step counter -#define declare_type(T) \ - void DoGetSync(Variable &, T *) final; \ - void DoGetDeferred(Variable &, T *) final; \ - std::map::BPInfo>> \ - DoAllStepsBlocksInfo(const Variable &variable) const final; \ - \ - std::vector::BPInfo> DoBlocksInfo( \ - const Variable &variable, const size_t step) const final; +#define declare_type(T) \ + void DoGetSync(Variable &, T *) final; \ + void DoGetDeferred(Variable &, T *) final; \ + std::map::BPInfo>> DoAllStepsBlocksInfo( \ + const Variable &variable) const final; \ + \ + std::vector::BPInfo> DoBlocksInfo(const Variable &variable, \ + const size_t step) const final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type void DoClose(const int transportIndex = -1) final; template - size_t ReadDataset(hid_t dataSetId, hid_t h5Type, Variable &variable, - T *values); + size_t ReadDataset(hid_t dataSetId, hid_t h5Type, Variable &variable, T *values); template void GetSyncCommon(Variable &variable, T *data); @@ -86,8 +82,8 @@ class HDF5ReaderP : public Engine GetAllStepsBlocksInfo(const Variable &variable) const; template - std::vector::BPInfo> - GetBlocksInfo(const Variable &variable, const size_t step) const; + std::vector::BPInfo> GetBlocksInfo(const Variable &variable, + const size_t step) const; template std::vector::BPInfo> diff --git a/source/adios2/engine/hdf5/HDF5ReaderP.tcc b/source/adios2/engine/hdf5/HDF5ReaderP.tcc index d820f941c8..40fd17c3fa 100644 --- a/source/adios2/engine/hdf5/HDF5ReaderP.tcc +++ b/source/adios2/engine/hdf5/HDF5ReaderP.tcc @@ -68,8 +68,7 @@ HDF5ReaderP::BlocksInfoCommon(const core::Variable &variable) const typename core::Variable::BPInfo blockInfo; blockInfo.Start = variable.m_Start; blockInfo.Count = variable.m_Shape; - if (variable.m_ShapeID == ShapeID::GlobalValue || - variable.m_ShapeID == ShapeID::LocalValue) + if (variable.m_ShapeID == ShapeID::GlobalValue || variable.m_ShapeID == ShapeID::LocalValue) { blockInfo.IsValue = true; } @@ -86,21 +85,19 @@ template std::map::BPInfo>> HDF5ReaderP::GetAllStepsBlocksInfo(const Variable &variable) const { - std::map::BPInfo>> - allStepsBlocksInfo; + std::map::BPInfo>> allStepsBlocksInfo; - for (size_t step = variable.m_AvailableStepsStart; - step < variable.m_AvailableStepsCount; ++step) + for (size_t step = variable.m_AvailableStepsStart; step < variable.m_AvailableStepsCount; + ++step) { - allStepsBlocksInfo[step - variable.m_AvailableStepsStart] = - BlocksInfoCommon(variable); + allStepsBlocksInfo[step - variable.m_AvailableStepsStart] = BlocksInfoCommon(variable); } return allStepsBlocksInfo; } template -std::vector::BPInfo> -HDF5ReaderP::GetBlocksInfo(const Variable &variable, const size_t step) const +std::vector::BPInfo> HDF5ReaderP::GetBlocksInfo(const Variable &variable, + const size_t step) const { return BlocksInfoCommon(variable); } diff --git a/source/adios2/engine/hdf5/HDF5WriterP.cpp b/source/adios2/engine/hdf5/HDF5WriterP.cpp index 9007961f51..14c6503566 100644 --- a/source/adios2/engine/hdf5/HDF5WriterP.cpp +++ b/source/adios2/engine/hdf5/HDF5WriterP.cpp @@ -19,8 +19,7 @@ namespace core namespace engine { -HDF5WriterP::HDF5WriterP(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +HDF5WriterP::HDF5WriterP(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("HDF5Writer", io, name, mode, std::move(comm)) { m_IO.m_ReadStreaming = false; @@ -56,11 +55,10 @@ void HDF5WriterP::Init() { if (m_OpenMode != Mode::Write && m_OpenMode != Mode::Append) { - helper::Throw( - "Engine", "HDF5WriterP", "Init", - "HDF5Writer only support OpenMode::Write or " - "OpenMode::Append " - ", in call to ADIOS Open or HDF5Writer constructor"); + helper::Throw("Engine", "HDF5WriterP", "Init", + "HDF5Writer only support OpenMode::Write or " + "OpenMode::Append " + ", in call to ADIOS Open or HDF5Writer constructor"); } if (m_OpenMode == Mode::Append) @@ -107,14 +105,14 @@ void HDF5WriterP::Init() */ } -#define declare_type(T) \ - void HDF5WriterP::DoPutSync(Variable &variable, const T *values) \ - { \ - DoPutSyncCommon(variable, values); \ - } \ - void HDF5WriterP::DoPutDeferred(Variable &variable, const T *values) \ - { \ - DoPutSyncCommon(variable, values); \ +#define declare_type(T) \ + void HDF5WriterP::DoPutSync(Variable &variable, const T *values) \ + { \ + DoPutSyncCommon(variable, values); \ + } \ + void HDF5WriterP::DoPutDeferred(Variable &variable, const T *values) \ + { \ + DoPutSyncCommon(variable, values); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/hdf5/HDF5WriterP.h b/source/adios2/engine/hdf5/HDF5WriterP.h index bd74202f22..178b3ad98e 100644 --- a/source/adios2/engine/hdf5/HDF5WriterP.h +++ b/source/adios2/engine/hdf5/HDF5WriterP.h @@ -37,13 +37,11 @@ class HDF5WriterP : public Engine * @param comm * @param method */ - HDF5WriterP(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + HDF5WriterP(IO &io, const std::string &name, const Mode mode, helper::Comm comm); ~HDF5WriterP(); - StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode, const float timeoutSeconds = -1.0) final; void EndStep() final; void PerformPuts() final; @@ -54,8 +52,8 @@ class HDF5WriterP : public Engine void Init(); -#define declare_type(T) \ - void DoPutSync(Variable &variable, const T *values) final; \ +#define declare_type(T) \ + void DoPutSync(Variable &variable, const T *values) final; \ void DoPutDeferred(Variable &variable, const T *values) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/inline/InlineReader.cpp b/source/adios2/engine/inline/InlineReader.cpp index 401956a709..339db17421 100644 --- a/source/adios2/engine/inline/InlineReader.cpp +++ b/source/adios2/engine/inline/InlineReader.cpp @@ -23,8 +23,7 @@ namespace core namespace engine { -InlineReader::InlineReader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +InlineReader::InlineReader(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("InlineReader", io, name, mode, std::move(comm)) { PERFSTUBS_SCOPED_TIMER("InlineReader::Open"); @@ -32,8 +31,8 @@ InlineReader::InlineReader(IO &io, const std::string &name, const Mode mode, Init(); if (m_Verbosity == 5) { - std::cout << "Inline Reader " << m_ReaderRank << " Open(" << m_Name - << ") in constructor" << std::endl; + std::cout << "Inline Reader " << m_ReaderRank << " Open(" << m_Name << ") in constructor" + << std::endl; } m_IsOpen = true; } @@ -52,10 +51,9 @@ const InlineWriter *InlineReader::GetWriter() const const auto &engine_map = m_IO.GetEngines(); if (engine_map.size() != 2) { - helper::Throw( - "Engine", "InlineReader", "GetWriter", - "There must be exactly one reader and one " - "writer for the inline engine."); + helper::Throw("Engine", "InlineReader", "GetWriter", + "There must be exactly one reader and one " + "writer for the inline engine."); } std::shared_ptr e = engine_map.begin()->second; @@ -74,16 +72,14 @@ const InlineWriter *InlineReader::GetWriter() const return writer; } -StepStatus InlineReader::BeginStep(const StepMode mode, - const float timeoutSeconds) +StepStatus InlineReader::BeginStep(const StepMode mode, const float timeoutSeconds) { PERFSTUBS_SCOPED_TIMER("InlineReader::BeginStep"); if (m_InsideStep) { - helper::Throw( - "Engine", "InlineReader", "BeginStep", - "InlineReader::BeginStep was called but the " - "reader is already inside a step"); + helper::Throw("Engine", "InlineReader", "BeginStep", + "InlineReader::BeginStep was called but the " + "reader is already inside a step"); } // Reader should be on step that writer just completed auto writer = GetWriter(); @@ -102,8 +98,8 @@ StepStatus InlineReader::BeginStep(const StepMode mode, if (m_Verbosity == 5) { - std::cout << "Inline Reader " << m_ReaderRank - << " BeginStep() new step " << m_CurrentStep << "\n"; + std::cout << "Inline Reader " << m_ReaderRank << " BeginStep() new step " << m_CurrentStep + << "\n"; } return StepStatus::OK; @@ -133,15 +129,14 @@ void InlineReader::EndStep() PERFSTUBS_SCOPED_TIMER("InlineReader::EndStep"); if (!m_InsideStep) { - helper::Throw( - "Engine", "InlineReader", "EndStep", - "InlineReader::EndStep() cannot be called " - "without a call to BeginStep() first"); + helper::Throw("Engine", "InlineReader", "EndStep", + "InlineReader::EndStep() cannot be called " + "without a call to BeginStep() first"); } if (m_Verbosity == 5) { - std::cout << "Inline Reader " << m_ReaderRank << " EndStep() Step " - << m_CurrentStep << std::endl; + std::cout << "Inline Reader " << m_ReaderRank << " EndStep() Step " << m_CurrentStep + << std::endl; } if (!m_DeferredVariables.empty()) { @@ -154,28 +149,26 @@ bool InlineReader::IsInsideStep() const { return m_InsideStep; } // PRIVATE -#define declare_type(T) \ - void InlineReader::DoGetSync(Variable &variable, T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("InlineReader::DoGetSync"); \ - GetSyncCommon(variable, data); \ - } \ - void InlineReader::DoGetDeferred(Variable &variable, T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("InlineReader::DoGetDeferred"); \ - GetDeferredCommon(variable, data); \ - } \ - typename Variable::BPInfo *InlineReader::DoGetBlockSync( \ - Variable &variable) \ - { \ - PERFSTUBS_SCOPED_TIMER("InlineReader::DoGetBlockSync"); \ - return GetBlockSyncCommon(variable); \ - } \ - typename Variable::BPInfo *InlineReader::DoGetBlockDeferred( \ - Variable &variable) \ - { \ - PERFSTUBS_SCOPED_TIMER("InlineReader::DoGetBlockDeferred"); \ - return GetBlockDeferredCommon(variable); \ +#define declare_type(T) \ + void InlineReader::DoGetSync(Variable &variable, T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("InlineReader::DoGetSync"); \ + GetSyncCommon(variable, data); \ + } \ + void InlineReader::DoGetDeferred(Variable &variable, T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("InlineReader::DoGetDeferred"); \ + GetDeferredCommon(variable, data); \ + } \ + typename Variable::BPInfo *InlineReader::DoGetBlockSync(Variable &variable) \ + { \ + PERFSTUBS_SCOPED_TIMER("InlineReader::DoGetBlockSync"); \ + return GetBlockSyncCommon(variable); \ + } \ + typename Variable::BPInfo *InlineReader::DoGetBlockDeferred(Variable &variable) \ + { \ + PERFSTUBS_SCOPED_TIMER("InlineReader::DoGetBlockDeferred"); \ + return GetBlockDeferredCommon(variable); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) @@ -185,19 +178,19 @@ ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) // Engine::Get() would not need an Info parameter passed in - binding could // retrieve the current Core Info object at a later time. // See note on binding Engine::BlocksInfo -#define declare_type(T) \ - std::map::BPInfo>> \ - InlineReader::DoAllStepsBlocksInfo(const Variable &variable) const \ - { \ - PERFSTUBS_SCOPED_TIMER("InlineReader::AllStepsBlockInfo"); \ - return std::map::BPInfo>>(); \ - } \ - \ - std::vector::BPInfo> InlineReader::DoBlocksInfo( \ - const Variable &variable, const size_t step) const \ - { \ - PERFSTUBS_SCOPED_TIMER("InlineReader::DoBlocksInfo"); \ - return variable.m_BlocksInfo; \ +#define declare_type(T) \ + std::map::BPInfo>> \ + InlineReader::DoAllStepsBlocksInfo(const Variable &variable) const \ + { \ + PERFSTUBS_SCOPED_TIMER("InlineReader::AllStepsBlockInfo"); \ + return std::map::BPInfo>>(); \ + } \ + \ + std::vector::BPInfo> InlineReader::DoBlocksInfo( \ + const Variable &variable, const size_t step) const \ + { \ + PERFSTUBS_SCOPED_TIMER("InlineReader::DoBlocksInfo"); \ + return variable.m_BlocksInfo; \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) @@ -222,11 +215,10 @@ void InlineReader::InitParameters() { m_Verbosity = std::stoi(value); if (m_Verbosity < 0 || m_Verbosity > 5) - helper::Throw( - "Engine", "InlineReader", "InitParameters", - "Method verbose argument must be an " - "integer in the range [0,5], in call to " - "Open or Engine constructor"); + helper::Throw("Engine", "InlineReader", "InitParameters", + "Method verbose argument must be an " + "integer in the range [0,5], in call to " + "Open or Engine constructor"); } } } @@ -241,8 +233,7 @@ void InlineReader::DoClose(const int transportIndex) PERFSTUBS_SCOPED_TIMER("InlineReader::DoClose"); if (m_Verbosity == 5) { - std::cout << "Inline Reader " << m_ReaderRank << " Close(" << m_Name - << ")\n"; + std::cout << "Inline Reader " << m_ReaderRank << " Close(" << m_Name << ")\n"; } } @@ -257,15 +248,14 @@ void InlineReader::SetDeferredVariablePointers() if (type == DataType::Struct) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - Variable &variable = \ - FindVariable(varName, "in call to EndStep"); \ - for (auto &info : variable.m_BlocksInfo) \ - { \ - info.BufferP = info.Data; \ - } \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + Variable &variable = FindVariable(varName, "in call to EndStep"); \ + for (auto &info : variable.m_BlocksInfo) \ + { \ + info.BufferP = info.Data; \ + } \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -273,8 +263,7 @@ void InlineReader::SetDeferredVariablePointers() m_DeferredVariables.clear(); } -#define declare_type(T) \ - template void InlineReader::Get(Variable &, T **) const; +#define declare_type(T) template void InlineReader::Get(Variable &, T **) const; ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/inline/InlineReader.h b/source/adios2/engine/inline/InlineReader.h index 6850614b5f..ef57cc4c5c 100644 --- a/source/adios2/engine/inline/InlineReader.h +++ b/source/adios2/engine/inline/InlineReader.h @@ -42,12 +42,10 @@ class InlineReader : public Engine * @param method * @param hostLanguage */ - InlineReader(IO &adios, const std::string &name, const Mode mode, - helper::Comm comm); + InlineReader(IO &adios, const std::string &name, const Mode mode, helper::Comm comm); ~InlineReader(); - StepStatus BeginStep(StepMode mode = StepMode::Read, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode = StepMode::Read, const float timeoutSeconds = -1.0) final; void PerformGets() final; size_t CurrentStep() const final; void EndStep() final; @@ -74,10 +72,10 @@ class InlineReader : public Engine void InitParameters() final; void InitTransports() final; -#define declare_type(T) \ - void DoGetSync(Variable &, T *) final; \ - void DoGetDeferred(Variable &, T *) final; \ - typename Variable::BPInfo *DoGetBlockSync(Variable &) final; \ +#define declare_type(T) \ + void DoGetSync(Variable &, T *) final; \ + void DoGetDeferred(Variable &, T *) final; \ + typename Variable::BPInfo *DoGetBlockSync(Variable &) final; \ typename Variable::BPInfo *DoGetBlockDeferred(Variable &) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -96,12 +94,12 @@ class InlineReader : public Engine template typename Variable::BPInfo *GetBlockDeferredCommon(Variable &variable); -#define declare_type(T) \ - std::map::BPInfo>> \ - DoAllStepsBlocksInfo(const Variable &variable) const final; \ - \ - std::vector::BPInfo> DoBlocksInfo( \ - const Variable &variable, const size_t step) const final; +#define declare_type(T) \ + std::map::BPInfo>> DoAllStepsBlocksInfo( \ + const Variable &variable) const final; \ + \ + std::vector::BPInfo> DoBlocksInfo(const Variable &variable, \ + const size_t step) const final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/inline/InlineReader.tcc b/source/adios2/engine/inline/InlineReader.tcc index b009fbceb3..547be8c6a8 100644 --- a/source/adios2/engine/inline/InlineReader.tcc +++ b/source/adios2/engine/inline/InlineReader.tcc @@ -28,8 +28,8 @@ inline void InlineReader::GetSyncCommon(Variable &variable, T *data) { if (m_Verbosity == 5) { - std::cout << "Inline Reader " << m_ReaderRank << " GetSync(" - << variable.m_Name << ")\n"; + std::cout << "Inline Reader " << m_ReaderRank << " GetSync(" << variable.m_Name + << ")\n"; } variable.m_Data = data; auto blockInfo = variable.m_BlocksInfo.back(); @@ -48,8 +48,7 @@ void InlineReader::Get(core::Variable &variable, T **data) const { if (m_Verbosity == 5) { - std::cout << "Inline Reader " << m_ReaderRank << " Get(" - << variable.m_Name << ")\n"; + std::cout << "Inline Reader " << m_ReaderRank << " Get(" << variable.m_Name << ")\n"; } auto blockInfo = variable.m_BlocksInfo.back(); *data = blockInfo.Data; @@ -64,8 +63,7 @@ void InlineReader::GetDeferredCommon(Variable &variable, T *data) } template -inline typename Variable::BPInfo * -InlineReader::GetBlockSyncCommon(Variable &variable) +inline typename Variable::BPInfo *InlineReader::GetBlockSyncCommon(Variable &variable) { if (variable.m_BlockID >= variable.m_BlocksInfo.size()) { @@ -76,8 +74,8 @@ InlineReader::GetBlockSyncCommon(Variable &variable) } if (m_Verbosity == 5) { - std::cout << "Inline Reader " << m_ReaderRank << " GetBlockSync(" - << variable.m_Name << ")\n"; + std::cout << "Inline Reader " << m_ReaderRank << " GetBlockSync(" << variable.m_Name + << ")\n"; } // Sync is okay when reading. Just need to make sure the pointer is // available now. @@ -87,8 +85,7 @@ InlineReader::GetBlockSyncCommon(Variable &variable) } template -inline typename Variable::BPInfo * -InlineReader::GetBlockDeferredCommon(Variable &variable) +inline typename Variable::BPInfo *InlineReader::GetBlockDeferredCommon(Variable &variable) { if (variable.m_BlockID >= variable.m_BlocksInfo.size()) { @@ -99,8 +96,8 @@ InlineReader::GetBlockDeferredCommon(Variable &variable) } if (m_Verbosity == 5) { - std::cout << "Inline Reader " << m_ReaderRank - << " GetBlockDeferred(" << variable.m_Name << ")\n"; + std::cout << "Inline Reader " << m_ReaderRank << " GetBlockDeferred(" << variable.m_Name + << ")\n"; } m_DeferredVariables.push_back(variable.m_Name); return &variable.m_BlocksInfo[variable.m_BlockID]; diff --git a/source/adios2/engine/inline/InlineWriter.cpp b/source/adios2/engine/inline/InlineWriter.cpp index 1b4a1c634a..c8c6864d79 100644 --- a/source/adios2/engine/inline/InlineWriter.cpp +++ b/source/adios2/engine/inline/InlineWriter.cpp @@ -24,8 +24,7 @@ namespace core namespace engine { -InlineWriter::InlineWriter(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +InlineWriter::InlineWriter(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("InlineWriter", io, name, mode, std::move(comm)) { PERFSTUBS_SCOPED_TIMER("InlineWriter::Open"); @@ -33,8 +32,7 @@ InlineWriter::InlineWriter(IO &io, const std::string &name, const Mode mode, Init(); if (m_Verbosity == 5) { - std::cout << "Inline Writer " << m_WriterRank << " Open(" << m_Name - << ")." << std::endl; + std::cout << "Inline Writer " << m_WriterRank << " Open(" << m_Name << ")." << std::endl; } m_IsOpen = true; } @@ -60,10 +58,9 @@ const InlineReader *InlineWriter::GetReader() const } else if (engine_map.size() > 2) { - helper::Throw( - "Engine", "InlineWriter", "GetReader", - "There must be only one inline writer and at most " - "one inline reader."); + helper::Throw("Engine", "InlineWriter", "GetReader", + "There must be only one inline writer and at most " + "one inline reader."); } std::shared_ptr e = engine_map.begin()->second; @@ -87,10 +84,9 @@ StepStatus InlineWriter::BeginStep(StepMode mode, const float timeoutSeconds) PERFSTUBS_SCOPED_TIMER("InlineWriter::BeginStep"); if (m_InsideStep) { - helper::Throw( - "Engine", "InlineWriter", "BeginStep", - "InlineWriter::BeginStep was called but the " - "writer is already inside a step"); + helper::Throw("Engine", "InlineWriter", "BeginStep", + "InlineWriter::BeginStep was called but the " + "writer is already inside a step"); } auto reader = GetReader(); @@ -110,8 +106,8 @@ StepStatus InlineWriter::BeginStep(StepMode mode, const float timeoutSeconds) } if (m_Verbosity == 5) { - std::cout << "Inline Writer " << m_WriterRank - << " BeginStep() new step " << m_CurrentStep << "\n"; + std::cout << "Inline Writer " << m_WriterRank << " BeginStep() new step " << m_CurrentStep + << "\n"; } // m_BlocksInfo for all variables should be cleared at this point, @@ -132,11 +128,11 @@ void InlineWriter::ResetVariables() if (type == DataType::Struct) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - Variable &variable = FindVariable(name, "in call to BeginStep"); \ - variable.m_BlocksInfo.clear(); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + Variable &variable = FindVariable(name, "in call to BeginStep"); \ + variable.m_BlocksInfo.clear(); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -161,15 +157,14 @@ void InlineWriter::EndStep() PERFSTUBS_SCOPED_TIMER("InlineWriter::EndStep"); if (!m_InsideStep) { - helper::Throw( - "Engine", "InlineWriter", "EndStep", - "InlineWriter::EndStep() cannot be called " - "without a call to BeginStep() first"); + helper::Throw("Engine", "InlineWriter", "EndStep", + "InlineWriter::EndStep() cannot be called " + "without a call to BeginStep() first"); } if (m_Verbosity == 5) { - std::cout << "Inline Writer " << m_WriterRank << " EndStep() Step " - << m_CurrentStep << std::endl; + std::cout << "Inline Writer " << m_WriterRank << " EndStep() Step " << m_CurrentStep + << std::endl; } m_InsideStep = false; } @@ -187,16 +182,16 @@ bool InlineWriter::IsInsideStep() const { return m_InsideStep; } // PRIVATE -#define declare_type(T) \ - void InlineWriter::DoPutSync(Variable &variable, const T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("InlineWriter::DoPutSync"); \ - PutSyncCommon(variable, data); \ - } \ - void InlineWriter::DoPutDeferred(Variable &variable, const T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER("InlineWriter::DoPutDeferred"); \ - PutDeferredCommon(variable, data); \ +#define declare_type(T) \ + void InlineWriter::DoPutSync(Variable &variable, const T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("InlineWriter::DoPutSync"); \ + PutSyncCommon(variable, data); \ + } \ + void InlineWriter::DoPutDeferred(Variable &variable, const T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER("InlineWriter::DoPutDeferred"); \ + PutDeferredCommon(variable, data); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -220,11 +215,10 @@ void InlineWriter::InitParameters() { m_Verbosity = std::stoi(value); if (m_Verbosity < 0 || m_Verbosity > 5) - helper::Throw( - "Engine", "InlineWriter", "InitParameters", - "Method verbose argument must be an " - "integer in the range [0,5], in call to " - "Open or Engine constructor"); + helper::Throw("Engine", "InlineWriter", "InitParameters", + "Method verbose argument must be an " + "integer in the range [0,5], in call to " + "Open or Engine constructor"); } } } @@ -239,8 +233,7 @@ void InlineWriter::DoClose(const int transportIndex) PERFSTUBS_SCOPED_TIMER("InlineWriter::DoClose"); if (m_Verbosity == 5) { - std::cout << "Inline Writer " << m_WriterRank << " Close(" << m_Name - << ")\n"; + std::cout << "Inline Writer " << m_WriterRank << " Close(" << m_Name << ")\n"; } // end of stream m_CurrentStep = static_cast(-1); diff --git a/source/adios2/engine/inline/InlineWriter.h b/source/adios2/engine/inline/InlineWriter.h index 3af5c88c35..af88283985 100644 --- a/source/adios2/engine/inline/InlineWriter.h +++ b/source/adios2/engine/inline/InlineWriter.h @@ -38,13 +38,11 @@ class InlineWriter : public Engine * @param comm * @param method */ - InlineWriter(IO &adios, const std::string &name, const Mode mode, - helper::Comm comm); + InlineWriter(IO &adios, const std::string &name, const Mode mode, helper::Comm comm); ~InlineWriter(); - StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode, const float timeoutSeconds = -1.0) final; size_t CurrentStep() const final; void PerformPuts() final; void EndStep() final; @@ -56,7 +54,7 @@ class InlineWriter : public Engine private: int m_Verbosity = 0; - int m_WriterRank; // my rank in the writers' comm + int m_WriterRank; // my rank in the writers' comm size_t m_CurrentStep = static_cast(-1); // steps start from 0 bool m_InsideStep = false; bool m_ResetVariables = false; // used when PerformPuts is being used @@ -66,8 +64,8 @@ class InlineWriter : public Engine void InitTransports() final; const InlineReader *GetReader() const; -#define declare_type(T) \ - void DoPutSync(Variable &, const T *) final; \ +#define declare_type(T) \ + void DoPutSync(Variable &, const T *) final; \ void DoPutDeferred(Variable &, const T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/inline/InlineWriter.tcc b/source/adios2/engine/inline/InlineWriter.tcc index 3fd05abd0d..9396beadb0 100644 --- a/source/adios2/engine/inline/InlineWriter.tcc +++ b/source/adios2/engine/inline/InlineWriter.tcc @@ -26,8 +26,8 @@ void InlineWriter::PutSyncCommon(Variable &variable, const T *data) { if (m_Verbosity == 5) { - std::cout << "Inline Writer " << m_WriterRank << " PutSync(" - << variable.m_Name << ")\n"; + std::cout << "Inline Writer " << m_WriterRank << " PutSync(" << variable.m_Name + << ")\n"; } // PutSync really shouldn't be supported for any variable, but single value @@ -38,8 +38,7 @@ void InlineWriter::PutSyncCommon(Variable &variable, const T *data) } else { - helper::Throw("Engine", "InlineWriter", - "PutSyncCommon", + helper::Throw("Engine", "InlineWriter", "PutSyncCommon", "Put Sync is not supported."); } } @@ -49,8 +48,8 @@ void InlineWriter::PutDeferredCommon(Variable &variable, const T *data) { if (m_Verbosity == 5) { - std::cout << "Inline Writer " << m_WriterRank << " PutDeferred(" - << variable.m_Name << ")\n"; + std::cout << "Inline Writer " << m_WriterRank << " PutDeferred(" << variable.m_Name + << ")\n"; } if (m_ResetVariables) @@ -58,8 +57,7 @@ void InlineWriter::PutDeferredCommon(Variable &variable, const T *data) ResetVariables(); } auto &blockInfo = variable.SetBlockInfo(data, CurrentStep()); - if (variable.m_ShapeID == ShapeID::GlobalValue || - variable.m_ShapeID == ShapeID::LocalValue) + if (variable.m_ShapeID == ShapeID::GlobalValue || variable.m_ShapeID == ShapeID::LocalValue) { blockInfo.IsValue = true; blockInfo.Value = blockInfo.Data[0]; diff --git a/source/adios2/engine/mhs/MhsReader.cpp b/source/adios2/engine/mhs/MhsReader.cpp index ef0a40535f..193c934275 100644 --- a/source/adios2/engine/mhs/MhsReader.cpp +++ b/source/adios2/engine/mhs/MhsReader.cpp @@ -18,8 +18,7 @@ namespace core namespace engine { -MhsReader::MhsReader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +MhsReader::MhsReader(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("MhsReader", io, name, mode, std::move(comm)) { helper::GetParameter(io.m_Parameters, "Tiers", m_Tiers); @@ -31,10 +30,9 @@ MhsReader::MhsReader(IO &io, const std::string &name, const Mode mode, for (int i = 1; i < m_Tiers; ++i) { - m_SubIOs.emplace_back( - &io.m_ADIOS.DeclareIO("SubIO" + std::to_string(i))); - m_SubEngines.emplace_back(&m_SubIOs.back()->Open( - m_Name + ".tier" + std::to_string(i), adios2::Mode::Read)); + m_SubIOs.emplace_back(&io.m_ADIOS.DeclareIO("SubIO" + std::to_string(i))); + m_SubEngines.emplace_back( + &m_SubIOs.back()->Open(m_Name + ".tier" + std::to_string(i), adios2::Mode::Read)); } m_IsOpen = true; } @@ -90,14 +88,11 @@ void MhsReader::EndStep() // PRIVATE -#define declare_type(T) \ - void MhsReader::DoGetSync(Variable &variable, T *data) \ - { \ - GetSyncCommon(variable, data); \ - } \ - void MhsReader::DoGetDeferred(Variable &variable, T *data) \ - { \ - GetDeferredCommon(variable, data); \ +#define declare_type(T) \ + void MhsReader::DoGetSync(Variable &variable, T *data) { GetSyncCommon(variable, data); } \ + void MhsReader::DoGetDeferred(Variable &variable, T *data) \ + { \ + GetDeferredCommon(variable, data); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) diff --git a/source/adios2/engine/mhs/MhsReader.h b/source/adios2/engine/mhs/MhsReader.h index ebd41901ac..e29de7abaf 100644 --- a/source/adios2/engine/mhs/MhsReader.h +++ b/source/adios2/engine/mhs/MhsReader.h @@ -24,12 +24,10 @@ namespace engine class MhsReader : public Engine { public: - MhsReader(IO &adios, const std::string &name, const Mode mode, - helper::Comm comm); + MhsReader(IO &adios, const std::string &name, const Mode mode, helper::Comm comm); virtual ~MhsReader(); - StepStatus BeginStep(StepMode mode = StepMode::Read, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode = StepMode::Read, const float timeoutSeconds = -1.0) final; size_t CurrentStep() const final; void PerformGets() final; void EndStep() final; @@ -40,8 +38,8 @@ class MhsReader : public Engine std::shared_ptr m_SiriusCompressor; int m_Tiers; -#define declare_type(T) \ - void DoGetSync(Variable &, T *) final; \ +#define declare_type(T) \ + void DoGetSync(Variable &, T *) final; \ void DoGetDeferred(Variable &, T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/mhs/MhsReader.tcc b/source/adios2/engine/mhs/MhsReader.tcc index 4c3928bfc7..739486ba11 100644 --- a/source/adios2/engine/mhs/MhsReader.tcc +++ b/source/adios2/engine/mhs/MhsReader.tcc @@ -28,8 +28,7 @@ inline void MhsReader::GetSyncCommon(Variable &variable, T *data) } template <> -inline void MhsReader::GetDeferredCommon(Variable &variable, - std::string *data) +inline void MhsReader::GetDeferredCommon(Variable &variable, std::string *data) { m_SubEngines[0]->Get(variable, data, Mode::Sync); } diff --git a/source/adios2/engine/mhs/MhsWriter.cpp b/source/adios2/engine/mhs/MhsWriter.cpp index 48fbff2749..11421d43d2 100644 --- a/source/adios2/engine/mhs/MhsWriter.cpp +++ b/source/adios2/engine/mhs/MhsWriter.cpp @@ -19,8 +19,7 @@ namespace core namespace engine { -MhsWriter::MhsWriter(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +MhsWriter::MhsWriter(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("MhsWriter", io, name, mode, std::move(comm)) { helper::GetParameter(io.m_Parameters, "Tiers", m_Tiers); @@ -39,22 +38,20 @@ MhsWriter::MhsWriter(IO &io, const std::string &name, const Mode mode, if (itTransport->second == "sirius") { - m_TransportMap.emplace( - itVar->second, - std::make_shared(io.m_Parameters)); + m_TransportMap.emplace(itVar->second, + std::make_shared(io.m_Parameters)); } else { - helper::Throw( - "Engine", "MhsWriter", "MhsWriter", "invalid operator"); + helper::Throw("Engine", "MhsWriter", "MhsWriter", + "invalid operator"); } } for (int i = 0; i < m_Tiers; ++i) { - m_SubIOs.emplace_back( - &io.m_ADIOS.DeclareIO("SubIO" + std::to_string(i))); - m_SubEngines.emplace_back(&m_SubIOs.back()->Open( - m_Name + ".tier" + std::to_string(i), adios2::Mode::Write)); + m_SubIOs.emplace_back(&io.m_ADIOS.DeclareIO("SubIO" + std::to_string(i))); + m_SubEngines.emplace_back( + &m_SubIOs.back()->Open(m_Name + ".tier" + std::to_string(i), adios2::Mode::Write)); } m_IsOpen = true; } @@ -109,14 +106,14 @@ void MhsWriter::Flush(const int transportIndex) // PRIVATE -#define declare_type(T) \ - void MhsWriter::DoPutSync(Variable &variable, const T *data) \ - { \ - PutSyncCommon(variable, data); \ - } \ - void MhsWriter::DoPutDeferred(Variable &variable, const T *data) \ - { \ - PutDeferredCommon(variable, data); \ +#define declare_type(T) \ + void MhsWriter::DoPutSync(Variable &variable, const T *data) \ + { \ + PutSyncCommon(variable, data); \ + } \ + void MhsWriter::DoPutDeferred(Variable &variable, const T *data) \ + { \ + PutDeferredCommon(variable, data); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/mhs/MhsWriter.h b/source/adios2/engine/mhs/MhsWriter.h index 7f4797a4a8..ec7e7625ca 100644 --- a/source/adios2/engine/mhs/MhsWriter.h +++ b/source/adios2/engine/mhs/MhsWriter.h @@ -24,12 +24,10 @@ class MhsWriter : public Engine { public: - MhsWriter(IO &adios, const std::string &name, const Mode mode, - helper::Comm comm); + MhsWriter(IO &adios, const std::string &name, const Mode mode, helper::Comm comm); virtual ~MhsWriter(); - StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode, const float timeoutSeconds = -1.0) final; size_t CurrentStep() const final; void PerformPuts() final; void EndStep() final; @@ -43,8 +41,8 @@ class MhsWriter : public Engine void PutSubEngine(bool finalPut = false); -#define declare_type(T) \ - void DoPutSync(Variable &, const T *) final; \ +#define declare_type(T) \ + void DoPutSync(Variable &, const T *) final; \ void DoPutDeferred(Variable &, const T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/mhs/MhsWriter.tcc b/source/adios2/engine/mhs/MhsWriter.tcc index 3a3f488cd3..736f8e37e1 100644 --- a/source/adios2/engine/mhs/MhsWriter.tcc +++ b/source/adios2/engine/mhs/MhsWriter.tcc @@ -27,8 +27,7 @@ void MhsWriter::PutDeferredCommon(Variable &variable, auto var = m_SubIOs[0]->InquireVariable(variable.m_Name); if (!var) { - var = &m_SubIOs[0]->DefineVariable(variable.m_Name, - {LocalValueDim}); + var = &m_SubIOs[0]->DefineVariable(variable.m_Name, {LocalValueDim}); } m_SubEngines[0]->Put(variable, data, Mode::Sync); } @@ -56,8 +55,7 @@ void MhsWriter::PutDeferredCommon(Variable &variable, const T *data) auto var0 = m_SubIOs[0]->InquireVariable(variable.m_Name); if (!var0) { - var0 = - &m_SubIOs[0]->DefineVariable(variable.m_Name, variable.m_Shape); + var0 = &m_SubIOs[0]->DefineVariable(variable.m_Name, variable.m_Shape); itVar = m_TransportMap.find(variable.m_Name); if (itVar != m_TransportMap.end()) { @@ -75,8 +73,7 @@ void MhsWriter::PutDeferredCommon(Variable &variable, const T *data) auto var = m_SubIOs[i]->InquireVariable(variable.m_Name); if (!var) { - var = &m_SubIOs[i]->DefineVariable(variable.m_Name, - variable.m_Shape); + var = &m_SubIOs[i]->DefineVariable(variable.m_Name, variable.m_Shape); var->AddOperation(itVar->second); } var->SetSelection({variable.m_Start, variable.m_Count}); diff --git a/source/adios2/engine/null/NullReader.cpp b/source/adios2/engine/null/NullReader.cpp index 27ba3b6c25..722ec10acd 100644 --- a/source/adios2/engine/null/NullReader.cpp +++ b/source/adios2/engine/null/NullReader.cpp @@ -17,10 +17,8 @@ struct NullReader::NullReaderImpl bool IsOpen = true; }; -NullReader::NullReader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) -: Engine("NullReader", io, name, mode, std::move(comm)), - Impl(new NullReader::NullReaderImpl) +NullReader::NullReader(IO &io, const std::string &name, const Mode mode, helper::Comm comm) +: Engine("NullReader", io, name, mode, std::move(comm)), Impl(new NullReader::NullReaderImpl) { m_IsOpen = true; } @@ -38,16 +36,14 @@ StepStatus NullReader::BeginStep(StepMode mode, const float timeoutSeconds) { if (!Impl->IsOpen) { - helper::Throw( - "Engine", "NullReader", "BeginStep", - "NullReader::BeginStep: Engine already closed"); + helper::Throw("Engine", "NullReader", "BeginStep", + "NullReader::BeginStep: Engine already closed"); } if (Impl->IsInStep) { - helper::Throw( - "Engine", "NullReader", "BeginStep", - "NullReader::BeginStep: Step already active"); + helper::Throw("Engine", "NullReader", "BeginStep", + "NullReader::BeginStep: Step already active"); } Impl->IsInStep = true; @@ -59,9 +55,8 @@ size_t NullReader::CurrentStep() const { if (!Impl->IsOpen) { - helper::Throw( - "Engine", "NullReader", "CurrentStep", - "NullReader::CurrentStep: Engine already closed"); + helper::Throw("Engine", "NullReader", "CurrentStep", + "NullReader::CurrentStep: Engine already closed"); } return static_cast(Impl->CurrentStep); @@ -71,16 +66,14 @@ void NullReader::EndStep() { if (!Impl->IsOpen) { - helper::Throw( - "Engine", "NullReader", "EndStep", - "NullReader::EndStep: Engine already closed"); + helper::Throw("Engine", "NullReader", "EndStep", + "NullReader::EndStep: Engine already closed"); } if (!Impl->IsInStep) { - helper::Throw( - "Engine", "NullReader", "EndStep", - "NullReader::EndStep: No active step"); + helper::Throw("Engine", "NullReader", "EndStep", + "NullReader::EndStep: No active step"); } Impl->IsInStep = false; @@ -90,9 +83,8 @@ void NullReader::PerformGets() { if (!Impl->IsOpen) { - helper::Throw( - "Engine", "NullReader", "PerformGets", - "NullReader::PerformPuts: Engine already closed"); + helper::Throw("Engine", "NullReader", "PerformGets", + "NullReader::PerformPuts: Engine already closed"); } return; @@ -104,21 +96,17 @@ void NullReader::DoClose(const int) { if (!Impl->IsOpen) { - helper::Throw("Engine", "NullReader", "DoClose", - "already closed"); + helper::Throw("Engine", "NullReader", "DoClose", "already closed"); } Impl->IsOpen = false; } -#define declare_type(T) \ - void NullReader::DoGetSync(Variable &variable, T *data) \ - { \ - GetSyncCommon(variable, data); \ - } \ - void NullReader::DoGetDeferred(Variable &variable, T *data) \ - { \ - GetDeferredCommon(variable, data); \ +#define declare_type(T) \ + void NullReader::DoGetSync(Variable &variable, T *data) { GetSyncCommon(variable, data); } \ + void NullReader::DoGetDeferred(Variable &variable, T *data) \ + { \ + GetDeferredCommon(variable, data); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) diff --git a/source/adios2/engine/null/NullReader.h b/source/adios2/engine/null/NullReader.h index 8f8938d043..8c4cb3e78f 100644 --- a/source/adios2/engine/null/NullReader.h +++ b/source/adios2/engine/null/NullReader.h @@ -28,20 +28,18 @@ class NullReader : public core::Engine { public: - NullReader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + NullReader(IO &io, const std::string &name, const Mode mode, helper::Comm comm); virtual ~NullReader(); - StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = -1.0) override; + StepStatus BeginStep(StepMode mode, const float timeoutSeconds = -1.0) override; size_t CurrentStep() const override; void EndStep() override; void PerformGets() override; protected: -#define declare_type(T) \ - void DoGetSync(Variable &, T *) override; \ +#define declare_type(T) \ + void DoGetSync(Variable &, T *) override; \ void DoGetDeferred(Variable &, T *) override; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/null/NullReader.tcc b/source/adios2/engine/null/NullReader.tcc index e1399e73a6..d46ef632f6 100644 --- a/source/adios2/engine/null/NullReader.tcc +++ b/source/adios2/engine/null/NullReader.tcc @@ -18,8 +18,7 @@ namespace engine { template <> -inline void NullReader::GetSyncCommon(Variable &variable, - std::string *data) +inline void NullReader::GetSyncCommon(Variable &variable, std::string *data) { variable.m_Data = data; } diff --git a/source/adios2/engine/null/NullWriter.cpp b/source/adios2/engine/null/NullWriter.cpp index 873b105b49..0802124d06 100644 --- a/source/adios2/engine/null/NullWriter.cpp +++ b/source/adios2/engine/null/NullWriter.cpp @@ -17,10 +17,8 @@ struct NullWriter::NullWriterImpl bool IsOpen = true; }; -NullWriter::NullWriter(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) -: Engine("NullWriter", io, name, mode, std::move(comm)), - Impl(new NullWriter::NullWriterImpl) +NullWriter::NullWriter(IO &io, const std::string &name, const Mode mode, helper::Comm comm) +: Engine("NullWriter", io, name, mode, std::move(comm)), Impl(new NullWriter::NullWriterImpl) { m_IsOpen = true; } @@ -38,16 +36,14 @@ StepStatus NullWriter::BeginStep(StepMode mode, const float timeoutSeconds) { if (!Impl->IsOpen) { - helper::Throw( - "Engine", "NullWriter", "BeginStep", - "NullWriter::BeginStep: Engine already closed"); + helper::Throw("Engine", "NullWriter", "BeginStep", + "NullWriter::BeginStep: Engine already closed"); } if (Impl->IsInStep) { - helper::Throw( - "Engine", "NullWriter", "BeginStep", - "NullWriter::BeginStep: Step already active"); + helper::Throw("Engine", "NullWriter", "BeginStep", + "NullWriter::BeginStep: Step already active"); } Impl->IsInStep = true; @@ -59,9 +55,8 @@ size_t NullWriter::CurrentStep() const { if (!Impl->IsOpen) { - helper::Throw( - "Engine", "NullWriter", "CurrentStep", - "NullWriter::CurrentStep: Engine already closed"); + helper::Throw("Engine", "NullWriter", "CurrentStep", + "NullWriter::CurrentStep: Engine already closed"); } return Impl->CurrentStep; @@ -71,16 +66,14 @@ void NullWriter::EndStep() { if (!Impl->IsOpen) { - helper::Throw( - "Engine", "NullWriter", "EndStep", - "NullWriter::EndStep: Engine already closed"); + helper::Throw("Engine", "NullWriter", "EndStep", + "NullWriter::EndStep: Engine already closed"); } if (!Impl->IsInStep) { - helper::Throw( - "Engine", "NullWriter", "EndStep", - "NullWriter::EndStep: No active step"); + helper::Throw("Engine", "NullWriter", "EndStep", + "NullWriter::EndStep: No active step"); } Impl->IsInStep = false; @@ -90,9 +83,8 @@ void NullWriter::PerformPuts() { if (!Impl->IsOpen) { - helper::Throw( - "Engine", "NullWriter", "PerformPuts", - "NullWriter::PerformPuts: Engine already closed"); + helper::Throw("Engine", "NullWriter", "PerformPuts", + "NullWriter::PerformPuts: Engine already closed"); } return; @@ -102,9 +94,8 @@ void NullWriter::Flush(const int) { if (!Impl->IsOpen) { - helper::Throw( - "Engine", "NullWriter", "Flush", - "NullWriter::Flush: Engine already closed"); + helper::Throw("Engine", "NullWriter", "Flush", + "NullWriter::Flush: Engine already closed"); } return; @@ -114,8 +105,7 @@ void NullWriter::DoClose(const int) { if (!Impl->IsOpen) { - helper::Throw("Engine", "NullWriter", "DoClose", - "already closed"); + helper::Throw("Engine", "NullWriter", "DoClose", "already closed"); } Impl->IsOpen = false; diff --git a/source/adios2/engine/null/NullWriter.h b/source/adios2/engine/null/NullWriter.h index ceb56ab04a..23f8321c8c 100644 --- a/source/adios2/engine/null/NullWriter.h +++ b/source/adios2/engine/null/NullWriter.h @@ -28,13 +28,11 @@ class NullWriter : public core::Engine { public: - NullWriter(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + NullWriter(IO &io, const std::string &name, const Mode mode, helper::Comm comm); virtual ~NullWriter(); - StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = -1.0) override; + StepStatus BeginStep(StepMode mode, const float timeoutSeconds = -1.0) override; size_t CurrentStep() const override; void EndStep() override; void PerformPuts() override; @@ -42,15 +40,15 @@ class NullWriter : public core::Engine protected: // Put -#define declare_type(T) \ - void DoPut(Variable &variable, typename Variable::Span &span, \ - const bool initialize, const T &value) override; +#define declare_type(T) \ + void DoPut(Variable &variable, typename Variable::Span &span, const bool initialize, \ + const T &value) override; ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type -#define declare_type(T) \ - void DoPutSync(Variable &, const T *) override; \ +#define declare_type(T) \ + void DoPutSync(Variable &, const T *) override; \ void DoPutDeferred(Variable &, const T *) override; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/null/NullWriter.tcc b/source/adios2/engine/null/NullWriter.tcc index d0023248ca..7accc78b6f 100644 --- a/source/adios2/engine/null/NullWriter.tcc +++ b/source/adios2/engine/null/NullWriter.tcc @@ -19,18 +19,17 @@ namespace core namespace engine { -#define instantiate_type(T) \ - void NullWriter::DoPut(Variable &variable, \ - typename Variable::Span &span, \ - const bool initialize, const T &value) \ - { \ +#define instantiate_type(T) \ + void NullWriter::DoPut(Variable &variable, typename Variable::Span &span, \ + const bool initialize, const T &value) \ + { \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(instantiate_type) #undef instantiate_type -#define instantiate_type(T) \ - void NullWriter::DoPutSync(Variable &, const T *) {} \ +#define instantiate_type(T) \ + void NullWriter::DoPutSync(Variable &, const T *) {} \ void NullWriter::DoPutDeferred(Variable &, const T *) {} ADIOS2_FOREACH_STDTYPE_1ARG(instantiate_type) diff --git a/source/adios2/engine/plugin/PluginEngine.cpp b/source/adios2/engine/plugin/PluginEngine.cpp index 951f566229..9dbfcc69d9 100644 --- a/source/adios2/engine/plugin/PluginEngine.cpp +++ b/source/adios2/engine/plugin/PluginEngine.cpp @@ -36,16 +36,15 @@ struct PluginEngine::Impl /******************************************************************************/ -PluginEngine::PluginEngine(core::IO &io, const std::string &name, - const Mode mode, helper::Comm comm) +PluginEngine::PluginEngine(core::IO &io, const std::string &name, const Mode mode, + helper::Comm comm) : Engine("Plugin", io, name, mode, comm.Duplicate()), m_Impl(new Impl) { auto pluginNameIt = m_IO.m_Parameters.find("PluginName"); if (pluginNameIt == m_IO.m_Parameters.end()) { - helper::Throw( - "Plugins", "PluginEngine", "PluginEngine", - "PluginName must be specified in the engine parameters"); + helper::Throw("Plugins", "PluginEngine", "PluginEngine", + "PluginName must be specified in the engine parameters"); } auto pluginLibIt = m_IO.m_Parameters.find("PluginLibrary"); @@ -59,12 +58,9 @@ PluginEngine::PluginEngine(core::IO &io, const std::string &name, auto &pluginManager = PluginManager::GetInstance(); pluginManager.SetParameters(m_IO.m_Parameters); pluginManager.LoadPlugin(pluginNameIt->second, pluginLibIt->second); - m_Impl->m_HandleCreate = - pluginManager.GetEngineCreateFun(pluginNameIt->second); - m_Impl->m_HandleDestroy = - pluginManager.GetEngineDestroyFun(pluginNameIt->second); - m_Impl->m_Plugin = m_Impl->m_HandleCreate(io, pluginNameIt->second, mode, - comm.Duplicate()); + m_Impl->m_HandleCreate = pluginManager.GetEngineCreateFun(pluginNameIt->second); + m_Impl->m_HandleDestroy = pluginManager.GetEngineDestroyFun(pluginNameIt->second); + m_Impl->m_Plugin = m_Impl->m_HandleCreate(io, pluginNameIt->second, mode, comm.Duplicate()); m_IsOpen = true; } @@ -81,32 +77,28 @@ void PluginEngine::PerformGets() { m_Impl->m_Plugin->PerformGets(); } void PluginEngine::EndStep() { m_Impl->m_Plugin->EndStep(); } -#define declare(T) \ - void PluginEngine::DoPutSync(core::Variable &variable, const T *values) \ - { \ - m_Impl->m_Plugin->DoPutSync(variable, values); \ - } \ - void PluginEngine::DoPutDeferred(core::Variable &variable, \ - const T *values) \ - { \ - m_Impl->m_Plugin->DoPutDeferred(variable, values); \ - } \ - void PluginEngine::DoGetSync(core::Variable &variable, T *values) \ - { \ - m_Impl->m_Plugin->DoGetSync(variable, values); \ - } \ - void PluginEngine::DoGetDeferred(core::Variable &variable, T *values) \ - { \ - m_Impl->m_Plugin->DoGetDeferred(variable, values); \ +#define declare(T) \ + void PluginEngine::DoPutSync(core::Variable &variable, const T *values) \ + { \ + m_Impl->m_Plugin->DoPutSync(variable, values); \ + } \ + void PluginEngine::DoPutDeferred(core::Variable &variable, const T *values) \ + { \ + m_Impl->m_Plugin->DoPutDeferred(variable, values); \ + } \ + void PluginEngine::DoGetSync(core::Variable &variable, T *values) \ + { \ + m_Impl->m_Plugin->DoGetSync(variable, values); \ + } \ + void PluginEngine::DoGetDeferred(core::Variable &variable, T *values) \ + { \ + m_Impl->m_Plugin->DoGetDeferred(variable, values); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare) #undef declare -void PluginEngine::DoClose(const int transportIndex) -{ - m_Impl->m_Plugin->Close(transportIndex); -} +void PluginEngine::DoClose(const int transportIndex) { m_Impl->m_Plugin->Close(transportIndex); } } // end namespace plugin } // end namespace adios2 diff --git a/source/adios2/engine/plugin/PluginEngine.h b/source/adios2/engine/plugin/PluginEngine.h index b5a53e4f72..fa0fe48662 100644 --- a/source/adios2/engine/plugin/PluginEngine.h +++ b/source/adios2/engine/plugin/PluginEngine.h @@ -33,21 +33,19 @@ namespace plugin class PluginEngine : public core::Engine { public: - PluginEngine(core::IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + PluginEngine(core::IO &io, const std::string &name, const Mode mode, helper::Comm comm); virtual ~PluginEngine(); - StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = 0.f) override; + StepStatus BeginStep(StepMode mode, const float timeoutSeconds = 0.f) override; void PerformPuts() override; void PerformGets() override; void EndStep() override; protected: -#define declare(T) \ - void DoPutSync(core::Variable &, const T *) override; \ - void DoPutDeferred(core::Variable &, const T *) override; \ - void DoGetSync(core::Variable &, T *) override; \ +#define declare(T) \ + void DoPutSync(core::Variable &, const T *) override; \ + void DoPutDeferred(core::Variable &, const T *) override; \ + void DoGetSync(core::Variable &, T *) override; \ void DoGetDeferred(core::Variable &, T *) override; ADIOS2_FOREACH_STDTYPE_1ARG(declare) diff --git a/source/adios2/engine/plugin/PluginEngineInterface.cpp b/source/adios2/engine/plugin/PluginEngineInterface.cpp index e0ebd3d28f..f5ecc1c3ac 100644 --- a/source/adios2/engine/plugin/PluginEngineInterface.cpp +++ b/source/adios2/engine/plugin/PluginEngineInterface.cpp @@ -16,9 +16,8 @@ namespace adios2 namespace plugin { -PluginEngineInterface::PluginEngineInterface(core::IO &io, - const std::string &name, - const Mode mode, helper::Comm comm) +PluginEngineInterface::PluginEngineInterface(core::IO &io, const std::string &name, const Mode mode, + helper::Comm comm) : Engine("PluginInterface", io, name, mode, std::move(comm)) { } diff --git a/source/adios2/engine/plugin/PluginEngineInterface.h b/source/adios2/engine/plugin/PluginEngineInterface.h index b5688391cc..4623c0cf2f 100644 --- a/source/adios2/engine/plugin/PluginEngineInterface.h +++ b/source/adios2/engine/plugin/PluginEngineInterface.h @@ -34,8 +34,8 @@ class PluginEngineInterface : public core::Engine friend class PluginEngine; public: - PluginEngineInterface(core::IO &io, const std::string &name, - const Mode mode, helper::Comm comm); + PluginEngineInterface(core::IO &io, const std::string &name, const Mode mode, + helper::Comm comm); virtual ~PluginEngineInterface() = default; }; diff --git a/source/adios2/engine/skeleton/SkeletonReader.cpp b/source/adios2/engine/skeleton/SkeletonReader.cpp index 8db9a8b79b..0c65cdd913 100644 --- a/source/adios2/engine/skeleton/SkeletonReader.cpp +++ b/source/adios2/engine/skeleton/SkeletonReader.cpp @@ -22,16 +22,15 @@ namespace core namespace engine { -SkeletonReader::SkeletonReader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +SkeletonReader::SkeletonReader(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("SkeletonReader", io, name, mode, std::move(comm)) { m_ReaderRank = m_Comm.Rank(); Init(); if (m_Verbosity == 5) { - std::cout << "Skeleton Reader " << m_ReaderRank << " Open(" << m_Name - << ") in constructor." << std::endl; + std::cout << "Skeleton Reader " << m_ReaderRank << " Open(" << m_Name << ") in constructor." + << std::endl; } m_IsOpen = true; } @@ -41,8 +40,7 @@ SkeletonReader::~SkeletonReader() /* m_Skeleton deconstructor does close and finalize */ if (m_Verbosity == 5) { - std::cout << "Skeleton Reader " << m_ReaderRank << " deconstructor on " - << m_Name << "\n"; + std::cout << "Skeleton Reader " << m_ReaderRank << " deconstructor on " << m_Name << "\n"; } if (m_IsOpen) { @@ -51,8 +49,7 @@ SkeletonReader::~SkeletonReader() m_IsOpen = false; } -StepStatus SkeletonReader::BeginStep(const StepMode mode, - const float timeoutSeconds) +StepStatus SkeletonReader::BeginStep(const StepMode mode, const float timeoutSeconds) { // step info should be received from the writer side in BeginStep() // so this forced increase should not be here @@ -60,8 +57,8 @@ StepStatus SkeletonReader::BeginStep(const StepMode mode, if (m_Verbosity == 5) { - std::cout << "Skeleton Reader " << m_ReaderRank - << " BeginStep() new step " << m_CurrentStep << "\n"; + std::cout << "Skeleton Reader " << m_ReaderRank << " BeginStep() new step " + << m_CurrentStep << "\n"; } // If we reach the end of stream (writer is gone or explicitly tells the @@ -87,8 +84,7 @@ void SkeletonReader::PerformGets() { if (m_Verbosity == 5) { - std::cout << "Skeleton Reader " << m_ReaderRank - << " PerformGets()\n"; + std::cout << "Skeleton Reader " << m_ReaderRank << " PerformGets()\n"; } m_NeedPerformGets = false; } @@ -112,14 +108,14 @@ void SkeletonReader::EndStep() // PRIVATE -#define declare_type(T) \ - void SkeletonReader::DoGetSync(Variable &variable, T *data) \ - { \ - GetSyncCommon(variable, data); \ - } \ - void SkeletonReader::DoGetDeferred(Variable &variable, T *data) \ - { \ - GetDeferredCommon(variable, data); \ +#define declare_type(T) \ + void SkeletonReader::DoGetSync(Variable &variable, T *data) \ + { \ + GetSyncCommon(variable, data); \ + } \ + void SkeletonReader::DoGetDeferred(Variable &variable, T *data) \ + { \ + GetDeferredCommon(variable, data); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) @@ -145,11 +141,10 @@ void SkeletonReader::InitParameters() { m_Verbosity = std::stoi(value); if (m_Verbosity < 0 || m_Verbosity > 5) - helper::Throw( - "Engine", "SkeletonReader", "InitParameters", - "Method verbose argument must be an " - "integer in the range [0,5], in call to " - "Open or Engine constructor"); + helper::Throw("Engine", "SkeletonReader", "InitParameters", + "Method verbose argument must be an " + "integer in the range [0,5], in call to " + "Open or Engine constructor"); } } } @@ -163,8 +158,7 @@ void SkeletonReader::DoClose(const int transportIndex) { if (m_Verbosity == 5) { - std::cout << "Skeleton Reader " << m_ReaderRank << " Close(" << m_Name - << ")\n"; + std::cout << "Skeleton Reader " << m_ReaderRank << " Close(" << m_Name << ")\n"; } } diff --git a/source/adios2/engine/skeleton/SkeletonReader.h b/source/adios2/engine/skeleton/SkeletonReader.h index 315aff1d03..afa250cf62 100644 --- a/source/adios2/engine/skeleton/SkeletonReader.h +++ b/source/adios2/engine/skeleton/SkeletonReader.h @@ -38,12 +38,10 @@ class SkeletonReader : public Engine * @param method * @param hostLanguage */ - SkeletonReader(IO &adios, const std::string &name, const Mode mode, - helper::Comm comm); + SkeletonReader(IO &adios, const std::string &name, const Mode mode, helper::Comm comm); ~SkeletonReader(); - StepStatus BeginStep(StepMode mode = StepMode::Read, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode = StepMode::Read, const float timeoutSeconds = -1.0) final; void PerformGets() final; size_t CurrentStep() const final; void EndStep() final; @@ -63,8 +61,8 @@ class SkeletonReader : public Engine void InitParameters() final; void InitTransports() final; -#define declare_type(T) \ - void DoGetSync(Variable &, T *) final; \ +#define declare_type(T) \ + void DoGetSync(Variable &, T *) final; \ void DoGetDeferred(Variable &, T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/skeleton/SkeletonReader.tcc b/source/adios2/engine/skeleton/SkeletonReader.tcc index 9b43d11722..cb300aaae0 100644 --- a/source/adios2/engine/skeleton/SkeletonReader.tcc +++ b/source/adios2/engine/skeleton/SkeletonReader.tcc @@ -23,14 +23,13 @@ namespace engine { template <> -inline void SkeletonReader::GetSyncCommon(Variable &variable, - std::string *data) +inline void SkeletonReader::GetSyncCommon(Variable &variable, std::string *data) { variable.m_Data = data; if (m_Verbosity == 5) { - std::cout << "Skeleton Reader " << m_ReaderRank << " GetSync(" - << variable.m_Name << ")\n"; + std::cout << "Skeleton Reader " << m_ReaderRank << " GetSync(" << variable.m_Name + << ")\n"; } } @@ -40,8 +39,8 @@ inline void SkeletonReader::GetSyncCommon(Variable &variable, T *data) variable.m_Data = data; if (m_Verbosity == 5) { - std::cout << "Skeleton Reader " << m_ReaderRank << " GetSync(" - << variable.m_Name << ")\n"; + std::cout << "Skeleton Reader " << m_ReaderRank << " GetSync(" << variable.m_Name + << ")\n"; } } @@ -51,8 +50,8 @@ void SkeletonReader::GetDeferredCommon(Variable &variable, T *data) // returns immediately if (m_Verbosity == 5) { - std::cout << "Skeleton Reader " << m_ReaderRank << " GetDeferred(" - << variable.m_Name << ")\n"; + std::cout << "Skeleton Reader " << m_ReaderRank << " GetDeferred(" << variable.m_Name + << ")\n"; } m_NeedPerformGets = true; } diff --git a/source/adios2/engine/skeleton/SkeletonWriter.cpp b/source/adios2/engine/skeleton/SkeletonWriter.cpp index 51cceb9d10..cb5d8ea7e7 100644 --- a/source/adios2/engine/skeleton/SkeletonWriter.cpp +++ b/source/adios2/engine/skeleton/SkeletonWriter.cpp @@ -23,16 +23,14 @@ namespace core namespace engine { -SkeletonWriter::SkeletonWriter(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +SkeletonWriter::SkeletonWriter(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("SkeletonWriter", io, name, mode, std::move(comm)) { m_WriterRank = m_Comm.Rank(); Init(); if (m_Verbosity == 5) { - std::cout << "Skeleton Writer " << m_WriterRank << " Open(" << m_Name - << ")." << std::endl; + std::cout << "Skeleton Writer " << m_WriterRank << " Open(" << m_Name << ")." << std::endl; } m_IsOpen = true; } @@ -51,8 +49,8 @@ StepStatus SkeletonWriter::BeginStep(StepMode mode, const float timeoutSeconds) m_CurrentStep++; // 0 is the first step if (m_Verbosity == 5) { - std::cout << "Skeleton Writer " << m_WriterRank - << " BeginStep() new step " << m_CurrentStep << "\n"; + std::cout << "Skeleton Writer " << m_WriterRank << " BeginStep() new step " + << m_CurrentStep << "\n"; } return StepStatus::OK; } @@ -61,8 +59,8 @@ size_t SkeletonWriter::CurrentStep() const { if (m_Verbosity == 5) { - std::cout << "Skeleton Writer " << m_WriterRank - << " CurrentStep() returns " << m_CurrentStep << "\n"; + std::cout << "Skeleton Writer " << m_WriterRank << " CurrentStep() returns " + << m_CurrentStep << "\n"; } return m_CurrentStep; } @@ -72,8 +70,7 @@ void SkeletonWriter::PerformPuts() { if (m_Verbosity == 5) { - std::cout << "Skeleton Writer " << m_WriterRank - << " PerformPuts()\n"; + std::cout << "Skeleton Writer " << m_WriterRank << " PerformPuts()\n"; } m_NeedPerformPuts = false; } @@ -99,15 +96,15 @@ void SkeletonWriter::Flush(const int transportIndex) // PRIVATE -#define declare_type(T) \ - void SkeletonWriter::DoPutSync(Variable &variable, const T *data) \ - { \ - PutSyncCommon(variable, variable.SetBlockInfo(data, CurrentStep())); \ - variable.m_BlocksInfo.clear(); \ - } \ - void SkeletonWriter::DoPutDeferred(Variable &variable, const T *data) \ - { \ - PutDeferredCommon(variable, data); \ +#define declare_type(T) \ + void SkeletonWriter::DoPutSync(Variable &variable, const T *data) \ + { \ + PutSyncCommon(variable, variable.SetBlockInfo(data, CurrentStep())); \ + variable.m_BlocksInfo.clear(); \ + } \ + void SkeletonWriter::DoPutDeferred(Variable &variable, const T *data) \ + { \ + PutDeferredCommon(variable, data); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -132,11 +129,10 @@ void SkeletonWriter::InitParameters() { m_Verbosity = std::stoi(value); if (m_Verbosity < 0 || m_Verbosity > 5) - helper::Throw( - "Engine", "SkeletonWriter", "InitParameters", - "Method verbose argument must be an " - "integer in the range [0,5], in call to " - "Open or Engine constructor"); + helper::Throw("Engine", "SkeletonWriter", "InitParameters", + "Method verbose argument must be an " + "integer in the range [0,5], in call to " + "Open or Engine constructor"); } } } @@ -150,8 +146,7 @@ void SkeletonWriter::DoClose(const int transportIndex) { if (m_Verbosity == 5) { - std::cout << "Skeleton Writer " << m_WriterRank << " Close(" << m_Name - << ")\n"; + std::cout << "Skeleton Writer " << m_WriterRank << " Close(" << m_Name << ")\n"; } } diff --git a/source/adios2/engine/skeleton/SkeletonWriter.h b/source/adios2/engine/skeleton/SkeletonWriter.h index d26485d002..243c88f189 100644 --- a/source/adios2/engine/skeleton/SkeletonWriter.h +++ b/source/adios2/engine/skeleton/SkeletonWriter.h @@ -34,13 +34,11 @@ class SkeletonWriter : public Engine * @param comm * @param method */ - SkeletonWriter(IO &adios, const std::string &name, const Mode mode, - helper::Comm comm); + SkeletonWriter(IO &adios, const std::string &name, const Mode mode, helper::Comm comm); ~SkeletonWriter(); - StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode, const float timeoutSeconds = -1.0) final; size_t CurrentStep() const final; void PerformPuts() final; void EndStep() final; @@ -58,8 +56,8 @@ class SkeletonWriter : public Engine void InitParameters() final; void InitTransports() final; -#define declare_type(T) \ - void DoPutSync(Variable &, const T *) final; \ +#define declare_type(T) \ + void DoPutSync(Variable &, const T *) final; \ void DoPutDeferred(Variable &, const T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -84,8 +82,7 @@ class SkeletonWriter : public Engine * @param values */ template - void PutSyncCommon(Variable &variable, - const typename Variable::BPInfo &blockInfo); + void PutSyncCommon(Variable &variable, const typename Variable::BPInfo &blockInfo); template void PutDeferredCommon(Variable &variable, const T *values); diff --git a/source/adios2/engine/skeleton/SkeletonWriter.tcc b/source/adios2/engine/skeleton/SkeletonWriter.tcc index f4335c6788..d59c23b344 100644 --- a/source/adios2/engine/skeleton/SkeletonWriter.tcc +++ b/source/adios2/engine/skeleton/SkeletonWriter.tcc @@ -22,13 +22,13 @@ namespace engine { template -void SkeletonWriter::PutSyncCommon( - Variable &variable, const typename Variable::BPInfo &blockInfo) +void SkeletonWriter::PutSyncCommon(Variable &variable, + const typename Variable::BPInfo &blockInfo) { if (m_Verbosity == 5) { - std::cout << "Skeleton Writer " << m_WriterRank << " PutSync(" - << variable.m_Name << ")\n"; + std::cout << "Skeleton Writer " << m_WriterRank << " PutSync(" << variable.m_Name + << ")\n"; } } @@ -39,8 +39,8 @@ void SkeletonWriter::PutDeferredCommon(Variable &variable, const T *data) if (m_Verbosity == 5) { - std::cout << "Skeleton Writer " << m_WriterRank << " PutDeferred(" - << variable.m_Name << ")\n"; + std::cout << "Skeleton Writer " << m_WriterRank << " PutDeferred(" << variable.m_Name + << ")\n"; } m_NeedPerformPuts = true; } diff --git a/source/adios2/engine/ssc/SscHelper.cpp b/source/adios2/engine/ssc/SscHelper.cpp index e20a83106e..6601ee0ee3 100644 --- a/source/adios2/engine/ssc/SscHelper.cpp +++ b/source/adios2/engine/ssc/SscHelper.cpp @@ -19,13 +19,11 @@ namespace engine namespace ssc { -size_t TotalDataSize(const Dims &dims, const size_t elementSize, - const ShapeID &shapeId) +size_t TotalDataSize(const Dims &dims, const size_t elementSize, const ShapeID &shapeId) { if (shapeId == ShapeID::GlobalArray || shapeId == ShapeID::LocalArray) { - return std::accumulate(dims.begin(), dims.end(), elementSize, - std::multiplies()); + return std::accumulate(dims.begin(), dims.end(), elementSize, std::multiplies()); } else if (shapeId == ShapeID::GlobalValue || shapeId == ShapeID::LocalValue) { @@ -74,10 +72,8 @@ RankPosMap CalculateOverlap(BlockVecVec &globalVecVec, const BlockVec &localVec) bool hasOverlap = true; for (size_t i = 0; i < gBlock.start.size(); ++i) { - if (gBlock.start[i] + gBlock.count[i] <= - lBlock.start[i] || - lBlock.start[i] + lBlock.count[i] <= - gBlock.start[i]) + if (gBlock.start[i] + gBlock.count[i] <= lBlock.start[i] || + lBlock.start[i] + lBlock.count[i] <= gBlock.start[i]) { hasOverlap = false; break; @@ -128,8 +124,7 @@ void SerializeVariables(const BlockVec &input, Buffer &output, const int rank) { output.value(pos) = static_cast(b.structDef.size()); ++pos; - std::memcpy(output.data(pos), b.structDef.data(), - b.structDef.size()); + std::memcpy(output.data(pos), b.structDef.data(), b.structDef.size()); pos += b.structDef.size(); } @@ -173,10 +168,9 @@ void SerializeVariables(const BlockVec &input, Buffer &output, const int rank) } } -void DeserializeVariable( - const Buffer &input, const ShapeID shapeId, uint64_t &pos, BlockInfo &b, - IO &io, const bool regIO, - std::unordered_map &StructDefs) +void DeserializeVariable(const Buffer &input, const ShapeID shapeId, uint64_t &pos, BlockInfo &b, + IO &io, const bool regIO, + std::unordered_map &StructDefs) { b.shapeId = static_cast(shapeId); @@ -264,49 +258,47 @@ void DeserializeVariable( } else { - io.DefineStructVariable(b.name, *def, vShape, vStart, - vShape); + io.DefineStructVariable(b.name, *def, vShape, vStart, vShape); } } } } -#define declare_type(T) \ - else if (b.type == helper::GetDataType()) \ - { \ - auto v = io.InquireVariable(b.name); \ - if (!v) \ - { \ - Dims vStart = b.start; \ - Dims vShape = b.shape; \ - if (io.m_ArrayOrder != ArrayOrdering::RowMajor) \ - { \ - std::reverse(vStart.begin(), vStart.end()); \ - std::reverse(vShape.begin(), vShape.end()); \ - } \ - if (b.shapeId == ShapeID::GlobalValue) \ - { \ - io.DefineVariable(b.name); \ - } \ - else if (b.shapeId == ShapeID::GlobalArray) \ - { \ - io.DefineVariable(b.name, vShape, vStart, vShape); \ - } \ - else if (b.shapeId == ShapeID::LocalValue) \ - { \ - io.DefineVariable(b.name, {adios2::LocalValueDim}); \ - } \ - else if (b.shapeId == ShapeID::LocalArray) \ - { \ - io.DefineVariable(b.name, {}, {}, vShape); \ - } \ - } \ +#define declare_type(T) \ + else if (b.type == helper::GetDataType()) \ + { \ + auto v = io.InquireVariable(b.name); \ + if (!v) \ + { \ + Dims vStart = b.start; \ + Dims vShape = b.shape; \ + if (io.m_ArrayOrder != ArrayOrdering::RowMajor) \ + { \ + std::reverse(vStart.begin(), vStart.end()); \ + std::reverse(vShape.begin(), vShape.end()); \ + } \ + if (b.shapeId == ShapeID::GlobalValue) \ + { \ + io.DefineVariable(b.name); \ + } \ + else if (b.shapeId == ShapeID::GlobalArray) \ + { \ + io.DefineVariable(b.name, vShape, vStart, vShape); \ + } \ + else if (b.shapeId == ShapeID::LocalValue) \ + { \ + io.DefineVariable(b.name, {adios2::LocalValueDim}); \ + } \ + else if (b.shapeId == ShapeID::LocalArray) \ + { \ + io.DefineVariable(b.name, {}, {}, vShape); \ + } \ + } \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type else { - helper::Throw("Engine", "SscHelper", - "DeserializeVariable", + helper::Throw("Engine", "SscHelper", "DeserializeVariable", "unknown variable data type"); } } @@ -322,16 +314,14 @@ void SerializeAttributes(IO &input, Buffer &output) if (attributePair.second->m_Type == DataType::String) { - const auto &attribute = - input.InquireAttribute(attributePair.first); + const auto &attribute = input.InquireAttribute(attributePair.first); output[pos] = 66; ++pos; output[pos] = static_cast(attribute->m_Type); ++pos; output[pos] = static_cast(attribute->m_Name.size()); ++pos; - std::memcpy(output.data(pos), attribute->m_Name.data(), - attribute->m_Name.size()); + std::memcpy(output.data(pos), attribute->m_Name.data(), attribute->m_Name.size()); pos += attribute->m_Name.size(); output.value(pos) = attribute->m_DataSingleValue.size(); pos += 8; @@ -339,36 +329,33 @@ void SerializeAttributes(IO &input, Buffer &output) attribute->m_DataSingleValue.size()); pos += attribute->m_DataSingleValue.size(); } -#define declare_type(T) \ - else if (attributePair.second->m_Type == helper::GetDataType()) \ - { \ - const auto &attribute = \ - input.InquireAttribute(attributePair.first); \ - output[pos] = 66; \ - ++pos; \ - output[pos] = static_cast(attribute->m_Type); \ - ++pos; \ - output[pos] = static_cast(attribute->m_Name.size()); \ - ++pos; \ - std::memcpy(output.data(pos), attribute->m_Name.data(), \ - attribute->m_Name.size()); \ - pos += attribute->m_Name.size(); \ - if (attribute->m_IsSingleValue) \ - { \ - output.value(pos) = sizeof(T); \ - pos += 8; \ - output.value(pos) = attribute->m_DataSingleValue; \ - pos += sizeof(T); \ - } \ - else \ - { \ - uint64_t size = sizeof(T) * attribute->m_DataArray.size(); \ - output.value(pos) = size; \ - pos += 8; \ - std::memcpy(output.data(pos), attribute->m_DataArray.data(), \ - size); \ - pos += size; \ - } \ +#define declare_type(T) \ + else if (attributePair.second->m_Type == helper::GetDataType()) \ + { \ + const auto &attribute = input.InquireAttribute(attributePair.first); \ + output[pos] = 66; \ + ++pos; \ + output[pos] = static_cast(attribute->m_Type); \ + ++pos; \ + output[pos] = static_cast(attribute->m_Name.size()); \ + ++pos; \ + std::memcpy(output.data(pos), attribute->m_Name.data(), attribute->m_Name.size()); \ + pos += attribute->m_Name.size(); \ + if (attribute->m_IsSingleValue) \ + { \ + output.value(pos) = sizeof(T); \ + pos += 8; \ + output.value(pos) = attribute->m_DataSingleValue; \ + pos += sizeof(T); \ + } \ + else \ + { \ + uint64_t size = sizeof(T) * attribute->m_DataArray.size(); \ + output.value(pos) = size; \ + pos += 8; \ + std::memcpy(output.data(pos), attribute->m_DataArray.data(), size); \ + pos += size; \ + } \ } ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_type) #undef declare_type @@ -376,8 +363,7 @@ void SerializeAttributes(IO &input, Buffer &output) } } -void DeserializeAttribute(const Buffer &input, uint64_t &pos, IO &io, - const bool regIO) +void DeserializeAttribute(const Buffer &input, uint64_t &pos, IO &io, const bool regIO) { const DataType type = static_cast(input[pos]); ++pos; @@ -403,28 +389,26 @@ void DeserializeAttribute(const Buffer &input, uint64_t &pos, IO &io, MPI_Comm_rank(MPI_COMM_WORLD, &rank); if (type == DataType::String) { - io.DefineAttribute( - name, std::string(input.data(pos), size)); + io.DefineAttribute(name, std::string(input.data(pos), size)); } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - if (size == sizeof(T)) \ - { \ - io.DefineAttribute(name, input.value(pos)); \ - } \ - else \ - { \ - io.DefineAttribute(name, input.data(pos), size / sizeof(T)); \ - } \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + if (size == sizeof(T)) \ + { \ + io.DefineAttribute(name, input.value(pos)); \ + } \ + else \ + { \ + io.DefineAttribute(name, input.data(pos), size / sizeof(T)); \ + } \ } ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_type) #undef declare_type else { - helper::Throw( - "Engine", "SscHelper", "DeserializeAttribute", - "unknown attribute data type"); + helper::Throw("Engine", "SscHelper", "DeserializeAttribute", + "unknown attribute data type"); } } } @@ -432,8 +416,7 @@ void DeserializeAttribute(const Buffer &input, uint64_t &pos, IO &io, } void SerializeStructDefinitions( - const std::unordered_multimap &definitions, - Buffer &output) + const std::unordered_multimap &definitions, Buffer &output) { if (definitions.empty()) { @@ -459,8 +442,7 @@ void SerializeStructDefinitions( { output[pos] = static_cast(p.second.Name(i).size()); ++pos; - std::memcpy(output.data(pos), p.second.Name(i).data(), - p.second.Name(i).size()); + std::memcpy(output.data(pos), p.second.Name(i).data(), p.second.Name(i).size()); pos += p.second.Name(i).size(); output.value(pos) = p.second.Offset(i); pos += 8; @@ -473,9 +455,8 @@ void SerializeStructDefinitions( output.value() = pos; } -void DeserializeStructDefinitions( - const Buffer &input, uint64_t &pos, IO &io, const bool regIO, - std::unordered_map &StructDefs) +void DeserializeStructDefinitions(const Buffer &input, uint64_t &pos, IO &io, const bool regIO, + std::unordered_map &StructDefs) { uint8_t defs = input.value(pos); ++pos; @@ -485,8 +466,7 @@ void DeserializeStructDefinitions( ++pos; std::vector defNameChar(nameSize); std::memcpy(defNameChar.data(), input.data(pos), nameSize); - std::string defName = - std::string(defNameChar.begin(), defNameChar.end()); + std::string defName = std::string(defNameChar.begin(), defNameChar.end()); pos += nameSize; size_t structSize = input.value(pos); pos += 8; @@ -496,9 +476,7 @@ void DeserializeStructDefinitions( if (StructDefs.find(defName) == StructDefs.end()) { structDefinition = - &StructDefs - .emplace(defName, StructDefinition(defName, structSize)) - .first->second; + &StructDefs.emplace(defName, StructDefinition(defName, structSize)).first->second; } for (uint8_t j = 0; j < items; ++j) { @@ -506,8 +484,7 @@ void DeserializeStructDefinitions( ++pos; defNameChar.resize(nameSize); std::memcpy(defNameChar.data(), input.data(pos), nameSize); - std::string itemName = - std::string(defNameChar.begin(), defNameChar.end()); + std::string itemName = std::string(defNameChar.begin(), defNameChar.end()); pos += nameSize; size_t itemOffset = input.value(pos); pos += 8; @@ -517,15 +494,14 @@ void DeserializeStructDefinitions( pos += 8; if (structDefinition != nullptr) { - structDefinition->AddField(itemName, itemOffset, itemType, - itemSize); + structDefinition->AddField(itemName, itemOffset, itemType, itemSize); } } } } -void Deserialize(const Buffer &input, BlockVecVec &output, IO &io, - const bool regVars, const bool regAttrs, const bool regDefs, +void Deserialize(const Buffer &input, BlockVecVec &output, IO &io, const bool regVars, + const bool regAttrs, const bool regDefs, std::unordered_map &StructDefs) { for (auto &i : output) @@ -560,14 +536,14 @@ void Deserialize(const Buffer &input, BlockVecVec &output, IO &io, output[rank].emplace_back(); auto &b = output[rank].back(); - DeserializeVariable(input, static_cast(shapeId), pos, b, - io, regVars, StructDefs); + DeserializeVariable(input, static_cast(shapeId), pos, b, io, regVars, + StructDefs); } } } -void AggregateMetadata(const Buffer &localBuffer, Buffer &globalBuffer, - MPI_Comm comm, const bool finalStep, const bool locked) +void AggregateMetadata(const Buffer &localBuffer, Buffer &globalBuffer, MPI_Comm comm, + const bool finalStep, const bool locked) { int mpiSize; MPI_Comm_size(comm, &mpiSize); @@ -583,9 +559,8 @@ void AggregateMetadata(const Buffer &localBuffer, Buffer &globalBuffer, displs[i] = displs[i - 1] + localSizes[i - 1]; } - MPI_Gatherv(localBuffer.data() + 8, localSize, MPI_CHAR, - globalBuffer.data() + 10, localSizes.data(), displs.data(), - MPI_CHAR, 0, comm); + MPI_Gatherv(localBuffer.data() + 8, localSize, MPI_CHAR, globalBuffer.data() + 10, + localSizes.data(), displs.data(), MPI_CHAR, 0, comm); globalBuffer[0] = finalStep; globalBuffer[1] = locked; globalBuffer.value(2) = globalSize; @@ -618,11 +593,9 @@ bool AreSameDims(const Dims &a, const Dims &b) return true; } -void MPI_Gatherv64(const void *sendbuf, uint64_t sendcount, - MPI_Datatype sendtype, void *recvbuf, - const uint64_t *recvcounts, const uint64_t *displs, - MPI_Datatype recvtype, int root, MPI_Comm comm, - const int chunksize) +void MPI_Gatherv64(const void *sendbuf, uint64_t sendcount, MPI_Datatype sendtype, void *recvbuf, + const uint64_t *recvcounts, const uint64_t *displs, MPI_Datatype recvtype, + int root, MPI_Comm comm, const int chunksize) { int mpiSize; @@ -648,19 +621,15 @@ void MPI_Gatherv64(const void *sendbuf, uint64_t sendcount, if (recvcount > static_cast(chunksize)) { MPI_Irecv(reinterpret_cast(recvbuf) + - (displs[i] + recvcounts[i] - recvcount) * - recvTypeSize, - chunksize, recvtype, i, 0, comm, - &requests.back()); + (displs[i] + recvcounts[i] - recvcount) * recvTypeSize, + chunksize, recvtype, i, 0, comm, &requests.back()); recvcount -= static_cast(chunksize); } else { MPI_Irecv(reinterpret_cast(recvbuf) + - (displs[i] + recvcounts[i] - recvcount) * - recvTypeSize, - static_cast(recvcount), recvtype, i, 0, comm, - &requests.back()); + (displs[i] + recvcounts[i] - recvcount) * recvTypeSize, + static_cast(recvcount), recvtype, i, 0, comm, &requests.back()); recvcount = 0; } } @@ -683,21 +652,17 @@ void MPI_Gatherv64(const void *sendbuf, uint64_t sendcount, { MPI_Isend(reinterpret_cast(sendbuf) + (sendcount - sendcountvar) * sendTypeSize, - static_cast(sendcountvar), sendtype, root, 0, comm, - &requests.back()); + static_cast(sendcountvar), sendtype, root, 0, comm, &requests.back()); sendcountvar = 0; } } - MPI_Waitall(static_cast(requests.size()), requests.data(), - MPI_STATUSES_IGNORE); + MPI_Waitall(static_cast(requests.size()), requests.data(), MPI_STATUSES_IGNORE); } -void MPI_Gatherv64OneSidedPull(const void *sendbuf, uint64_t sendcount, - MPI_Datatype sendtype, void *recvbuf, - const uint64_t *recvcounts, - const uint64_t *displs, MPI_Datatype recvtype, - int root, MPI_Comm comm, const int chunksize) +void MPI_Gatherv64OneSidedPull(const void *sendbuf, uint64_t sendcount, MPI_Datatype sendtype, + void *recvbuf, const uint64_t *recvcounts, const uint64_t *displs, + MPI_Datatype recvtype, int root, MPI_Comm comm, const int chunksize) { int mpiSize; @@ -712,8 +677,8 @@ void MPI_Gatherv64OneSidedPull(const void *sendbuf, uint64_t sendcount, MPI_Type_size(sendtype, &sendTypeSize); MPI_Win win; - MPI_Win_create(const_cast(sendbuf), sendcount * sendTypeSize, - sendTypeSize, MPI_INFO_NULL, comm, &win); + MPI_Win_create(const_cast(sendbuf), sendcount * sendTypeSize, sendTypeSize, + MPI_INFO_NULL, comm, &win); if (mpiRank == root) { @@ -725,19 +690,16 @@ void MPI_Gatherv64OneSidedPull(const void *sendbuf, uint64_t sendcount, if (recvcount > static_cast(chunksize)) { MPI_Get(reinterpret_cast(recvbuf) + - (displs[i] + recvcounts[i] - recvcount) * - recvTypeSize, - chunksize, recvtype, i, recvcounts[i] - recvcount, - chunksize, recvtype, win); + (displs[i] + recvcounts[i] - recvcount) * recvTypeSize, + chunksize, recvtype, i, recvcounts[i] - recvcount, chunksize, recvtype, + win); recvcount -= static_cast(chunksize); } else { MPI_Get(reinterpret_cast(recvbuf) + - (displs[i] + recvcounts[i] - recvcount) * - recvTypeSize, - static_cast(recvcount), recvtype, i, - recvcounts[i] - recvcount, + (displs[i] + recvcounts[i] - recvcount) * recvTypeSize, + static_cast(recvcount), recvtype, i, recvcounts[i] - recvcount, static_cast(recvcount), recvtype, win); recvcount = 0; } @@ -748,11 +710,9 @@ void MPI_Gatherv64OneSidedPull(const void *sendbuf, uint64_t sendcount, MPI_Win_free(&win); } -void MPI_Gatherv64OneSidedPush(const void *sendbuf, uint64_t sendcount, - MPI_Datatype sendtype, void *recvbuf, - const uint64_t *recvcounts, - const uint64_t *displs, MPI_Datatype recvtype, - int root, MPI_Comm comm, const int chunksize) +void MPI_Gatherv64OneSidedPush(const void *sendbuf, uint64_t sendcount, MPI_Datatype sendtype, + void *recvbuf, const uint64_t *recvcounts, const uint64_t *displs, + MPI_Datatype recvtype, int root, MPI_Comm comm, const int chunksize) { int mpiSize; @@ -769,8 +729,7 @@ void MPI_Gatherv64OneSidedPush(const void *sendbuf, uint64_t sendcount, uint64_t recvsize = displs[mpiSize - 1] + recvcounts[mpiSize - 1]; MPI_Win win; - MPI_Win_create(recvbuf, recvsize * recvTypeSize, recvTypeSize, - MPI_INFO_NULL, comm, &win); + MPI_Win_create(recvbuf, recvsize * recvTypeSize, recvTypeSize, MPI_INFO_NULL, comm, &win); uint64_t sendcountvar = sendcount; @@ -780,9 +739,8 @@ void MPI_Gatherv64OneSidedPush(const void *sendbuf, uint64_t sendcount, { MPI_Put(reinterpret_cast(sendbuf) + (sendcount - sendcountvar) * sendTypeSize, - chunksize, sendtype, root, - displs[mpiRank] + sendcount - sendcountvar, chunksize, - sendtype, win); + chunksize, sendtype, root, displs[mpiRank] + sendcount - sendcountvar, + chunksize, sendtype, win); sendcountvar -= static_cast(chunksize); } else @@ -790,8 +748,8 @@ void MPI_Gatherv64OneSidedPush(const void *sendbuf, uint64_t sendcount, MPI_Put(reinterpret_cast(sendbuf) + (sendcount - sendcountvar) * sendTypeSize, static_cast(sendcountvar), sendtype, root, - displs[mpiRank] + sendcount - sendcountvar, - static_cast(sendcountvar), sendtype, win); + displs[mpiRank] + sendcount - sendcountvar, static_cast(sendcountvar), + sendtype, win); sendcountvar = 0; } } @@ -853,10 +811,8 @@ void PrintBlockVecVec(const BlockVecVec &bvv, const std::string &label) PrintDims(i.shape, " Shape : "); PrintDims(i.start, " Start : "); PrintDims(i.count, " Count : "); - std::cout << " Position Start : " << i.bufferStart - << std::endl; - std::cout << " Position Count : " << i.bufferCount - << std::endl; + std::cout << " Position Start : " << i.bufferStart << std::endl; + std::cout << " Position Count : " << i.bufferCount << std::endl; } ++rank; } @@ -867,8 +823,7 @@ void PrintRankPosMap(const RankPosMap &m, const std::string &label) std::cout << label << std::endl; for (const auto &rank : m) { - std::cout << "Rank = " << rank.first - << ", bufferStart = " << rank.second.first + std::cout << "Rank = " << rank.first << ", bufferStart = " << rank.second.first << ", bufferCount = " << rank.second.second << std::endl; } } diff --git a/source/adios2/engine/ssc/SscHelper.h b/source/adios2/engine/ssc/SscHelper.h index 1fb2f6340f..84f396f84d 100644 --- a/source/adios2/engine/ssc/SscHelper.h +++ b/source/adios2/engine/ssc/SscHelper.h @@ -51,8 +51,7 @@ class Buffer if (size > m_Capacity) { m_Capacity = size * 2; - m_Buffer = - reinterpret_cast(realloc(m_Buffer, m_Capacity)); + m_Buffer = reinterpret_cast(realloc(m_Buffer, m_Capacity)); } if (m_Buffer == nullptr) { @@ -65,10 +64,7 @@ class Buffer { return *reinterpret_cast(m_Buffer + pos); } - uint8_t &value(const size_t pos = 0) - { - return *reinterpret_cast(m_Buffer + pos); - } + uint8_t &value(const size_t pos = 0) { return *reinterpret_cast(m_Buffer + pos); } template T value(const size_t pos = 0) const { @@ -88,20 +84,14 @@ class Buffer { return reinterpret_cast(m_Buffer + pos); } - uint8_t *data(const size_t pos = 0) - { - return reinterpret_cast(m_Buffer + pos); - } + uint8_t *data(const size_t pos = 0) { return reinterpret_cast(m_Buffer + pos); } const uint8_t *data(const size_t pos = 0) const { return reinterpret_cast(m_Buffer + pos); } size_t size() const { return m_Size; } uint8_t &operator[](const size_t pos) { return *(m_Buffer + pos); } - const uint8_t &operator[](const size_t pos) const - { - return *(m_Buffer + pos); - } + const uint8_t &operator[](const size_t pos) const { return *(m_Buffer + pos); } private: size_t m_Capacity = 0; @@ -134,57 +124,44 @@ using MpiInfo = std::vector>; void PrintDims(const Dims &dims, const std::string &label = std::string()); void PrintBlock(const BlockInfo &b, const std::string &label = std::string()); -void PrintBlockVec(const BlockVec &bv, - const std::string &label = std::string()); -void PrintBlockVecVec(const BlockVecVec &bvv, - const std::string &label = std::string()); -void PrintRankPosMap(const RankPosMap &m, - const std::string &label = std::string()); +void PrintBlockVec(const BlockVec &bv, const std::string &label = std::string()); +void PrintBlockVecVec(const BlockVecVec &bvv, const std::string &label = std::string()); +void PrintRankPosMap(const RankPosMap &m, const std::string &label = std::string()); void PrintMpiInfo(const MpiInfo &writersInfo, const MpiInfo &readersInfo); -size_t TotalDataSize(const Dims &dims, const size_t elementSize, - const ShapeID &shapeId); +size_t TotalDataSize(const Dims &dims, const size_t elementSize, const ShapeID &shapeId); size_t TotalDataSize(const BlockVec &bv); -RankPosMap CalculateOverlap(BlockVecVec &globalPattern, - const BlockVec &localPattern); +RankPosMap CalculateOverlap(BlockVecVec &globalPattern, const BlockVec &localPattern); void SerializeVariables(const BlockVec &input, Buffer &output, const int rank); void SerializeAttributes(IO &input, Buffer &output); void SerializeStructDefinitions( - const std::unordered_multimap &definitions, - Buffer &output); -void DeserializeVariable( - const Buffer &input, const ShapeID shapeId, uint64_t &pos, BlockInfo &b, - IO &io, const bool regIO, - std::unordered_map &StructDefs); -void DeserializeAttribute(const Buffer &input, uint64_t &pos, IO &io, - const bool regIO); -void DeserializeStructDefinitions( - const Buffer &input, uint64_t &pos, IO &io, const bool regIO, - std::unordered_map &StructDefs); -void Deserialize(const Buffer &input, BlockVecVec &output, IO &io, - const bool regVars, const bool regAttrs, const bool regDefs, + const std::unordered_multimap &definitions, Buffer &output); +void DeserializeVariable(const Buffer &input, const ShapeID shapeId, uint64_t &pos, BlockInfo &b, + IO &io, const bool regIO, + std::unordered_map &StructDefs); +void DeserializeAttribute(const Buffer &input, uint64_t &pos, IO &io, const bool regIO); +void DeserializeStructDefinitions(const Buffer &input, uint64_t &pos, IO &io, const bool regIO, + std::unordered_map &StructDefs); +void Deserialize(const Buffer &input, BlockVecVec &output, IO &io, const bool regVars, + const bool regAttrs, const bool regDefs, std::unordered_map &StructDefs); -void AggregateMetadata(const Buffer &localBuffer, Buffer &globalBuffer, - MPI_Comm comm, const bool finalStep, const bool locked); +void AggregateMetadata(const Buffer &localBuffer, Buffer &globalBuffer, MPI_Comm comm, + const bool finalStep, const bool locked); void BroadcastMetadata(Buffer &globalBuffer, const int root, MPI_Comm comm); -void MPI_Gatherv64OneSidedPush( - const void *sendbuf, uint64_t sendcount, MPI_Datatype sendtype, - void *recvbuf, const uint64_t *recvcounts, const uint64_t *displs, - MPI_Datatype recvtype, int root, MPI_Comm comm, - const int chunksize = std::numeric_limits::max()); -void MPI_Gatherv64OneSidedPull( - const void *sendbuf, uint64_t sendcount, MPI_Datatype sendtype, - void *recvbuf, const uint64_t *recvcounts, const uint64_t *displs, - MPI_Datatype recvtype, int root, MPI_Comm comm, - const int chunksize = std::numeric_limits::max()); -void MPI_Gatherv64(const void *sendbuf, uint64_t sendcount, - MPI_Datatype sendtype, void *recvbuf, - const uint64_t *recvcounts, const uint64_t *displs, - MPI_Datatype recvtype, int root, MPI_Comm comm, - const int chunksize = std::numeric_limits::max()); +void MPI_Gatherv64OneSidedPush(const void *sendbuf, uint64_t sendcount, MPI_Datatype sendtype, + void *recvbuf, const uint64_t *recvcounts, const uint64_t *displs, + MPI_Datatype recvtype, int root, MPI_Comm comm, + const int chunksize = std::numeric_limits::max()); +void MPI_Gatherv64OneSidedPull(const void *sendbuf, uint64_t sendcount, MPI_Datatype sendtype, + void *recvbuf, const uint64_t *recvcounts, const uint64_t *displs, + MPI_Datatype recvtype, int root, MPI_Comm comm, + const int chunksize = std::numeric_limits::max()); +void MPI_Gatherv64(const void *sendbuf, uint64_t sendcount, MPI_Datatype sendtype, void *recvbuf, + const uint64_t *recvcounts, const uint64_t *displs, MPI_Datatype recvtype, + int root, MPI_Comm comm, const int chunksize = std::numeric_limits::max()); bool AreSameDims(const Dims &a, const Dims &b); diff --git a/source/adios2/engine/ssc/SscReader.cpp b/source/adios2/engine/ssc/SscReader.cpp index 84c7d4ebec..bab2fe32e0 100644 --- a/source/adios2/engine/ssc/SscReader.cpp +++ b/source/adios2/engine/ssc/SscReader.cpp @@ -22,8 +22,7 @@ namespace core namespace engine { -SscReader::SscReader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +SscReader::SscReader(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("SscReader", io, name, mode, std::move(comm)) { PERFSTUBS_SCOPED_TIMER_FUNC(); @@ -32,18 +31,17 @@ SscReader::SscReader(IO &io, const std::string &name, const Mode mode, helper::GetParameter(m_IO.m_Parameters, "EngineMode", m_EngineMode); helper::Log("Engine", "SscReader", "SscReader", m_EngineMode, - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); if (m_EngineMode == "generic") { - m_EngineInstance = std::make_shared( - io, name, mode, CommAsMPI(m_Comm)); + m_EngineInstance = + std::make_shared(io, name, mode, CommAsMPI(m_Comm)); } else if (m_EngineMode == "naive") { - m_EngineInstance = std::make_shared( - io, name, mode, CommAsMPI(m_Comm)); + m_EngineInstance = std::make_shared(io, name, mode, CommAsMPI(m_Comm)); } m_IsOpen = true; } @@ -61,21 +59,16 @@ StepStatus SscReader::BeginStep(StepMode stepMode, const float timeoutSeconds) { PERFSTUBS_SCOPED_TIMER_FUNC(); - auto ret = m_EngineInstance->BeginStep(stepMode, timeoutSeconds, - m_ReaderSelectionsLocked); + auto ret = m_EngineInstance->BeginStep(stepMode, timeoutSeconds, m_ReaderSelectionsLocked); - helper::Log("Engine", "SscReader", "BeginStep", - std::to_string(CurrentStep()), - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "SscReader", "BeginStep", std::to_string(CurrentStep()), + m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); return ret; } -size_t SscReader::CurrentStep() const -{ - return m_EngineInstance->CurrentStep(); -} +size_t SscReader::CurrentStep() const { return m_EngineInstance->CurrentStep(); } void SscReader::PerformGets() { @@ -88,8 +81,8 @@ void SscReader::EndStep() PERFSTUBS_SCOPED_TIMER_FUNC(); helper::Log("Engine", "SscReader", "EndStep", std::to_string(CurrentStep()), - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); return m_EngineInstance->EndStep(m_ReaderSelectionsLocked); } @@ -98,42 +91,40 @@ void SscReader::DoClose(const int transportIndex) { PERFSTUBS_SCOPED_TIMER_FUNC(); - helper::Log("Engine", "SscReader", "Close", m_Name, - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "SscReader", "Close", m_Name, m_Verbosity >= 10 ? m_Comm.Rank() : 0, + m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); m_EngineInstance->Close(transportIndex); } -#define declare_type(T) \ - void SscReader::DoGetSync(Variable &variable, T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER_FUNC(); \ - helper::Log("Engine", "SscReader", "GetSync", variable.m_Name, \ - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, \ - m_Verbosity, helper::LogMode::INFO); \ - m_EngineInstance->GetDeferred(variable, data); \ - m_EngineInstance->PerformGets(); \ - } \ - void SscReader::DoGetDeferred(Variable &variable, T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER_FUNC(); \ - helper::Log("Engine", "SscReader", "GetDeferred", variable.m_Name, \ - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, \ - m_Verbosity, helper::LogMode::INFO); \ - m_EngineInstance->GetDeferred(variable, data); \ - } \ - std::vector::BPInfo> SscReader::DoBlocksInfo( \ - const Variable &variable, const size_t step) const \ - { \ - return m_EngineInstance->BlocksInfo(variable, step); \ +#define declare_type(T) \ + void SscReader::DoGetSync(Variable &variable, T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER_FUNC(); \ + helper::Log("Engine", "SscReader", "GetSync", variable.m_Name, \ + m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, m_Verbosity, \ + helper::LogMode::INFO); \ + m_EngineInstance->GetDeferred(variable, data); \ + m_EngineInstance->PerformGets(); \ + } \ + void SscReader::DoGetDeferred(Variable &variable, T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER_FUNC(); \ + helper::Log("Engine", "SscReader", "GetDeferred", variable.m_Name, \ + m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, m_Verbosity, \ + helper::LogMode::INFO); \ + m_EngineInstance->GetDeferred(variable, data); \ + } \ + std::vector::BPInfo> SscReader::DoBlocksInfo(const Variable &variable, \ + const size_t step) const \ + { \ + return m_EngineInstance->BlocksInfo(variable, step); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type -std::vector -SscReader::DoBlocksInfoStruct(const VariableStruct &variable, - const size_t step) const +std::vector SscReader::DoBlocksInfoStruct(const VariableStruct &variable, + const size_t step) const { return m_EngineInstance->BlocksInfo(variable, step); } @@ -142,8 +133,8 @@ void SscReader::DoGetStructSync(VariableStruct &variable, void *data) { PERFSTUBS_SCOPED_TIMER_FUNC(); helper::Log("Engine", "SscReader", "GetSync", variable.m_Name, - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); m_EngineInstance->GetDeferred(variable, data); m_EngineInstance->PerformGets(); } @@ -151,8 +142,8 @@ void SscReader::DoGetStructDeferred(VariableStruct &variable, void *data) { PERFSTUBS_SCOPED_TIMER_FUNC(); helper::Log("Engine", "SscReader", "GetDeferred", variable.m_Name, - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); m_EngineInstance->GetDeferred(variable, data); } diff --git a/source/adios2/engine/ssc/SscReader.h b/source/adios2/engine/ssc/SscReader.h index 2369f592ca..4049cb2484 100644 --- a/source/adios2/engine/ssc/SscReader.h +++ b/source/adios2/engine/ssc/SscReader.h @@ -24,30 +24,27 @@ namespace engine class SscReader : public Engine { public: - SscReader(IO &adios, const std::string &name, const Mode mode, - helper::Comm comm); + SscReader(IO &adios, const std::string &name, const Mode mode, helper::Comm comm); ~SscReader(); - StepStatus BeginStep( - StepMode stepMode = StepMode::Read, - const float timeoutSeconds = std::numeric_limits::max()) final; + StepStatus BeginStep(StepMode stepMode = StepMode::Read, + const float timeoutSeconds = std::numeric_limits::max()) final; void PerformGets() final; size_t CurrentStep() const final; void EndStep() final; private: -#define declare_type(T) \ - void DoGetSync(Variable &, T *) final; \ - void DoGetDeferred(Variable &, T *) final; \ - std::vector::BPInfo> DoBlocksInfo( \ - const Variable &variable, const size_t step) const final; +#define declare_type(T) \ + void DoGetSync(Variable &, T *) final; \ + void DoGetDeferred(Variable &, T *) final; \ + std::vector::BPInfo> DoBlocksInfo(const Variable &variable, \ + const size_t step) const final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type void DoGetStructSync(VariableStruct &, void *) final; void DoGetStructDeferred(VariableStruct &, void *) final; - std::vector - DoBlocksInfoStruct(const VariableStruct &variable, - const size_t step) const final; + std::vector DoBlocksInfoStruct(const VariableStruct &variable, + const size_t step) const final; void DoClose(const int transportIndex = -1) final; diff --git a/source/adios2/engine/ssc/SscReaderBase.cpp b/source/adios2/engine/ssc/SscReaderBase.cpp index 1314b04d4f..952e8aef86 100644 --- a/source/adios2/engine/ssc/SscReaderBase.cpp +++ b/source/adios2/engine/ssc/SscReaderBase.cpp @@ -21,8 +21,7 @@ namespace engine namespace ssc { -SscReaderBase::SscReaderBase(IO &io, const std::string &name, const Mode mode, - MPI_Comm comm) +SscReaderBase::SscReaderBase(IO &io, const std::string &name, const Mode mode, MPI_Comm comm) : m_Name(name), m_IO(io) { helper::GetParameter(io.m_Parameters, "Verbose", m_Verbosity); @@ -41,9 +40,8 @@ void SscReaderBase::SyncMpiPattern(MPI_Comm comm) MPI_Group readerGroup; MPI_Comm writerComm; - helper::HandshakeComm(m_Name, 'r', m_OpenTimeoutSecs, comm, streamGroup, - m_WriterGroup, readerGroup, m_StreamComm, writerComm, - m_ReaderComm); + helper::HandshakeComm(m_Name, 'r', m_OpenTimeoutSecs, comm, streamGroup, m_WriterGroup, + readerGroup, m_StreamComm, writerComm, m_ReaderComm); MPI_Comm_rank(comm, &m_ReaderRank); MPI_Comm_size(comm, &m_ReaderSize); @@ -51,16 +49,16 @@ void SscReaderBase::SyncMpiPattern(MPI_Comm comm) MPI_Comm_size(m_StreamComm, &m_StreamSize); int writerMasterStreamRank = -1; - MPI_Allreduce(&writerMasterStreamRank, &m_WriterMasterStreamRank, 1, - MPI_INT, MPI_MAX, m_StreamComm); + MPI_Allreduce(&writerMasterStreamRank, &m_WriterMasterStreamRank, 1, MPI_INT, MPI_MAX, + m_StreamComm); int readerMasterStreamRank = -1; if (m_ReaderRank == 0) { readerMasterStreamRank = m_StreamRank; } - MPI_Allreduce(&readerMasterStreamRank, &m_ReaderMasterStreamRank, 1, - MPI_INT, MPI_MAX, m_StreamComm); + MPI_Allreduce(&readerMasterStreamRank, &m_ReaderMasterStreamRank, 1, MPI_INT, MPI_MAX, + m_StreamComm); } } diff --git a/source/adios2/engine/ssc/SscReaderBase.h b/source/adios2/engine/ssc/SscReaderBase.h index 564cab4bb7..8acfc86963 100644 --- a/source/adios2/engine/ssc/SscReaderBase.h +++ b/source/adios2/engine/ssc/SscReaderBase.h @@ -28,26 +28,24 @@ class SscReaderBase { public: - SscReaderBase(IO &io, const std::string &name, const Mode mode, - MPI_Comm comm); + SscReaderBase(IO &io, const std::string &name, const Mode mode, MPI_Comm comm); virtual ~SscReaderBase(); - virtual StepStatus BeginStep(const StepMode mode, - const float timeoutSeconds, + virtual StepStatus BeginStep(const StepMode mode, const float timeoutSeconds, const bool readerLocked) = 0; virtual size_t CurrentStep() = 0; virtual void PerformGets() = 0; virtual void EndStep(const bool readerLocked) = 0; virtual void Close(const int transportIndex) = 0; -#define declare_type(T) \ - virtual std::vector::BPInfo> BlocksInfo( \ - const Variable &variable, const size_t step) const = 0; +#define declare_type(T) \ + virtual std::vector::BPInfo> BlocksInfo(const Variable &variable, \ + const size_t step) const = 0; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type - virtual std::vector - BlocksInfo(const VariableStruct &variable, const size_t step) const = 0; + virtual std::vector BlocksInfo(const VariableStruct &variable, + const size_t step) const = 0; virtual void GetDeferred(VariableBase &, void *) = 0; diff --git a/source/adios2/engine/ssc/SscReaderGeneric.cpp b/source/adios2/engine/ssc/SscReaderGeneric.cpp index 06fe249108..380e6feddd 100644 --- a/source/adios2/engine/ssc/SscReaderGeneric.cpp +++ b/source/adios2/engine/ssc/SscReaderGeneric.cpp @@ -19,16 +19,14 @@ namespace engine namespace ssc { -SscReaderGeneric::SscReaderGeneric(IO &io, const std::string &name, - const Mode mode, MPI_Comm comm) +SscReaderGeneric::SscReaderGeneric(IO &io, const std::string &name, const Mode mode, MPI_Comm comm) : SscReaderBase(io, name, mode, comm) { } void SscReaderGeneric::BeginStepConsequentFixed() { - MPI_Waitall(static_cast(m_MpiRequests.size()), m_MpiRequests.data(), - MPI_STATUS_IGNORE); + MPI_Waitall(static_cast(m_MpiRequests.size()), m_MpiRequests.data(), MPI_STATUS_IGNORE); m_MpiRequests.clear(); } @@ -50,8 +48,7 @@ void SscReaderGeneric::BeginStepFlexible(StepStatus &status) MPI_Win_create(NULL, 0, 1, MPI_INFO_NULL, m_StreamComm, &m_MpiWin); } -StepStatus SscReaderGeneric::BeginStep(const StepMode stepMode, - const float timeoutSeconds, +StepStatus SscReaderGeneric::BeginStep(const StepMode stepMode, const float timeoutSeconds, const bool readerLocked) { @@ -86,8 +83,7 @@ StepStatus SscReaderGeneric::BeginStep(const StepMode stepMode, { for (auto &v : r) { - if (v.shapeId == ShapeID::GlobalValue || - v.shapeId == ShapeID::LocalValue) + if (v.shapeId == ShapeID::GlobalValue || v.shapeId == ShapeID::LocalValue) { std::vector value(v.bufferCount); if (m_CurrentStep == 0 || m_WriterDefinitionsLocked == false || @@ -97,43 +93,35 @@ StepStatus SscReaderGeneric::BeginStep(const StepMode stepMode, } else { - std::memcpy(value.data(), m_Buffer.data() + v.bufferStart, - v.bufferCount); + std::memcpy(value.data(), m_Buffer.data() + v.bufferStart, v.bufferCount); } if (v.type == DataType::String) { auto variable = m_IO.InquireVariable(v.name); if (variable) { - variable->m_Value = - std::string(value.begin(), value.end()); - variable->m_Min = - std::string(value.begin(), value.end()); - variable->m_Max = - std::string(value.begin(), value.end()); + variable->m_Value = std::string(value.begin(), value.end()); + variable->m_Min = std::string(value.begin(), value.end()); + variable->m_Max = std::string(value.begin(), value.end()); } } -#define declare_type(T) \ - else if (v.type == helper::GetDataType()) \ - { \ - auto variable = m_IO.InquireVariable(v.name); \ - if (variable) \ - { \ - std::memcpy(reinterpret_cast(&variable->m_Min), \ - value.data(), value.size()); \ - std::memcpy(reinterpret_cast(&variable->m_Max), \ - value.data(), value.size()); \ - std::memcpy(reinterpret_cast(&variable->m_Value), \ - value.data(), value.size()); \ - } \ +#define declare_type(T) \ + else if (v.type == helper::GetDataType()) \ + { \ + auto variable = m_IO.InquireVariable(v.name); \ + if (variable) \ + { \ + std::memcpy(reinterpret_cast(&variable->m_Min), value.data(), value.size()); \ + std::memcpy(reinterpret_cast(&variable->m_Max), value.data(), value.size()); \ + std::memcpy(reinterpret_cast(&variable->m_Value), value.data(), value.size()); \ + } \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type else { - helper::Log("Engine", "SscReaderGeneric", "BeginStep", - "unknown data type", m_ReaderRank, m_ReaderRank, - 0, m_Verbosity, helper::FATALERROR); + helper::Log("Engine", "SscReaderGeneric", "BeginStep", "unknown data type", + m_ReaderRank, m_ReaderRank, 0, m_Verbosity, helper::FATALERROR); } } } @@ -159,9 +147,8 @@ void SscReaderGeneric::EndStepFixed() for (const auto &i : m_AllReceivingWriterRanks) { m_MpiRequests.emplace_back(); - MPI_Irecv(m_Buffer.data() + i.second.first, - static_cast(i.second.second), MPI_CHAR, i.first, 0, - m_StreamComm, &m_MpiRequests.back()); + MPI_Irecv(m_Buffer.data() + i.second.first, static_cast(i.second.second), MPI_CHAR, + i.first, 0, m_StreamComm, &m_MpiRequests.back()); } } @@ -193,8 +180,7 @@ void SscReaderGeneric::EndStep(const bool readerLocked) { if (m_Threading) { - m_EndStepThread = - std::thread(&SscReaderGeneric::EndStepFirstFlexible, this); + m_EndStepThread = std::thread(&SscReaderGeneric::EndStepFirstFlexible, this); } else { @@ -206,8 +192,7 @@ void SscReaderGeneric::EndStep(const bool readerLocked) { if (m_Threading) { - m_EndStepThread = std::thread( - &SscReaderGeneric::EndStepConsequentFlexible, this); + m_EndStepThread = std::thread(&SscReaderGeneric::EndStepConsequentFlexible, this); } else { @@ -225,11 +210,10 @@ void SscReaderGeneric::PerformGets() if (m_CurrentStep == 0 || m_WriterDefinitionsLocked == false || m_ReaderSelectionsLocked == false) { - ssc::Deserialize(m_GlobalWritePatternBuffer, m_GlobalWritePattern, m_IO, - false, false, false, m_StructDefinitions); + ssc::Deserialize(m_GlobalWritePatternBuffer, m_GlobalWritePattern, m_IO, false, false, + false, m_StructDefinitions); size_t oldSize = m_AllReceivingWriterRanks.size(); - m_AllReceivingWriterRanks = - ssc::CalculateOverlap(m_GlobalWritePattern, m_LocalReadPattern); + m_AllReceivingWriterRanks = ssc::CalculateOverlap(m_GlobalWritePattern, m_LocalReadPattern); CalculatePosition(m_GlobalWritePattern, m_AllReceivingWriterRanks); size_t newSize = m_AllReceivingWriterRanks.size(); if (oldSize != newSize) @@ -243,9 +227,9 @@ void SscReaderGeneric::PerformGets() for (const auto &i : m_AllReceivingWriterRanks) { MPI_Win_lock(MPI_LOCK_SHARED, i.first, 0, m_MpiWin); - MPI_Get(m_Buffer.data() + i.second.first, - static_cast(i.second.second), MPI_CHAR, i.first, 0, - static_cast(i.second.second), MPI_CHAR, m_MpiWin); + MPI_Get(m_Buffer.data() + i.second.first, static_cast(i.second.second), + MPI_CHAR, i.first, 0, static_cast(i.second.second), MPI_CHAR, + m_MpiWin); MPI_Win_unlock(i.first, m_MpiWin); } } @@ -265,9 +249,8 @@ void SscReaderGeneric::PerformGets() { if (b.type == DataType::None) { - helper::Log("Engine", "SscReaderGeneric", - "PerformGets", "unknown data type", - m_ReaderRank, m_ReaderRank, 0, + helper::Log("Engine", "SscReaderGeneric", "PerformGets", + "unknown data type", m_ReaderRank, m_ReaderRank, 0, m_Verbosity, helper::FATALERROR); } else if (b.type == DataType::String) @@ -294,22 +277,17 @@ void SscReaderGeneric::PerformGets() } helper::NdCopy( m_Buffer.data() + b.bufferStart, - helper::CoreDims(b.start), - helper::CoreDims(b.count), true, true, - reinterpret_cast(br.data), - helper::CoreDims(br.start), - helper::CoreDims(br.count), true, true, - static_cast(b.elementSize), - helper::CoreDims(b.start), - helper::CoreDims(b.count), - helper::CoreDims(br.memStart), - helper::CoreDims(br.memCount)); + helper::CoreDims(b.start), helper::CoreDims(b.count), true, + true, reinterpret_cast(br.data), + helper::CoreDims(br.start), helper::CoreDims(br.count), true, + true, static_cast(b.elementSize), + helper::CoreDims(b.start), helper::CoreDims(b.count), + helper::CoreDims(br.memStart), helper::CoreDims(br.memCount)); } else if (b.shapeId == ShapeID::GlobalValue || b.shapeId == ShapeID::LocalValue) { - std::memcpy(br.data, - m_Buffer.data() + b.bufferStart, + std::memcpy(br.data, m_Buffer.data() + b.bufferStart, b.bufferCount); } } @@ -324,8 +302,7 @@ void SscReaderGeneric::PerformGets() bool SscReaderGeneric::SyncWritePattern() { - ssc::BroadcastMetadata(m_GlobalWritePatternBuffer, m_WriterMasterStreamRank, - m_StreamComm); + ssc::BroadcastMetadata(m_GlobalWritePatternBuffer, m_WriterMasterStreamRank, m_StreamComm); if (m_GlobalWritePatternBuffer[0] == 1) { @@ -334,8 +311,8 @@ bool SscReaderGeneric::SyncWritePattern() m_WriterDefinitionsLocked = m_GlobalWritePatternBuffer[1]; - ssc::Deserialize(m_GlobalWritePatternBuffer, m_GlobalWritePattern, m_IO, - true, true, true, m_StructDefinitions); + ssc::Deserialize(m_GlobalWritePatternBuffer, m_GlobalWritePattern, m_IO, true, true, true, + m_StructDefinitions); if (m_Verbosity >= 10 && m_ReaderRank == 0) { @@ -357,14 +334,12 @@ void SscReaderGeneric::SyncReadPattern() ssc::AggregateMetadata(localBuffer, globalBuffer, m_ReaderComm, false, m_ReaderSelectionsLocked); - ssc::BroadcastMetadata(globalBuffer, m_ReaderMasterStreamRank, - m_StreamComm); + ssc::BroadcastMetadata(globalBuffer, m_ReaderMasterStreamRank, m_StreamComm); - ssc::Deserialize(m_GlobalWritePatternBuffer, m_GlobalWritePattern, m_IO, - true, true, true, m_StructDefinitions); + ssc::Deserialize(m_GlobalWritePatternBuffer, m_GlobalWritePattern, m_IO, true, true, true, + m_StructDefinitions); - m_AllReceivingWriterRanks = - ssc::CalculateOverlap(m_GlobalWritePattern, m_LocalReadPattern); + m_AllReceivingWriterRanks = ssc::CalculateOverlap(m_GlobalWritePattern, m_LocalReadPattern); CalculatePosition(m_GlobalWritePattern, m_AllReceivingWriterRanks); size_t totalDataSize = 0; @@ -381,17 +356,15 @@ void SscReaderGeneric::SyncReadPattern() MPI_Barrier(m_ReaderComm); if (i == m_ReaderRank) { - ssc::PrintBlockVec(m_LocalReadPattern, - "\n\nGlobal Read Pattern on Rank " + - std::to_string(m_ReaderRank)); + ssc::PrintBlockVec(m_LocalReadPattern, "\n\nGlobal Read Pattern on Rank " + + std::to_string(m_ReaderRank)); } } MPI_Barrier(m_ReaderComm); } } -void SscReaderGeneric::CalculatePosition(ssc::BlockVecVec &bvv, - ssc::RankPosMap &allRanks) +void SscReaderGeneric::CalculatePosition(ssc::BlockVecVec &bvv, ssc::RankPosMap &allRanks) { size_t bufferPosition = 0; @@ -430,17 +403,16 @@ void SscReaderGeneric::Close(const int transportIndex) } } -#define declare_type(T) \ - std::vector::BPInfo> SscReaderGeneric::BlocksInfo( \ - const Variable &variable, const size_t step) const \ - { \ - return BlocksInfoCommon(variable, step); \ +#define declare_type(T) \ + std::vector::BPInfo> SscReaderGeneric::BlocksInfo( \ + const Variable &variable, const size_t step) const \ + { \ + return BlocksInfoCommon(variable, step); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type -void SscReaderGeneric::GetDeferredDeltaCommon(VariableBase &variable, - void *data) +void SscReaderGeneric::GetDeferredDeltaCommon(VariableBase &variable, void *data) { Dims vStart = variable.m_Start; @@ -478,9 +450,8 @@ void SscReaderGeneric::GetDeferredDeltaCommon(VariableBase &variable, { if (d == 0) { - helper::Throw( - "Engine", "SscReader", "GetDeferredDeltaCommon", - "SetSelection count dimensions cannot be 0"); + helper::Throw("Engine", "SscReader", "GetDeferredDeltaCommon", + "SetSelection count dimensions cannot be 0"); } } } @@ -505,8 +476,7 @@ void SscReaderGeneric::GetDeferred(VariableBase &variable, void *data) { if (b.name == variable.m_Name) { - *dataString = - std::string(b.value.begin(), b.value.end()); + *dataString = std::string(b.value.begin(), b.value.end()); } } } @@ -557,30 +527,23 @@ void SscReaderGeneric::GetDeferred(VariableBase &variable, void *data) continue; } - if (b.shapeId == ShapeID::GlobalArray || - b.shapeId == ShapeID::LocalArray) + if (b.shapeId == ShapeID::GlobalArray || b.shapeId == ShapeID::LocalArray) { helper::NdCopy(m_Buffer.data() + b.bufferStart, - helper::CoreDims(b.start), - helper::CoreDims(b.count), true, true, - reinterpret_cast(data), vStart, - vCount, true, true, - static_cast(variable.m_ElementSize), - helper::CoreDims(b.start), - helper::CoreDims(b.count), vMemStart, - vMemCount); + helper::CoreDims(b.start), helper::CoreDims(b.count), true, + true, reinterpret_cast(data), vStart, vCount, true, + true, static_cast(variable.m_ElementSize), + helper::CoreDims(b.start), helper::CoreDims(b.count), + vMemStart, vMemCount); } - else if (b.shapeId == ShapeID::GlobalValue || - b.shapeId == ShapeID::LocalValue) + else if (b.shapeId == ShapeID::GlobalValue || b.shapeId == ShapeID::LocalValue) { - std::memcpy(data, m_Buffer.data() + b.bufferStart, - b.bufferCount); + std::memcpy(data, m_Buffer.data() + b.bufferStart, b.bufferCount); } else { - helper::Log("Engine", "SscReaderGeneric", - "GetDeferredCommon", "unknown ShapeID", - m_ReaderRank, m_ReaderRank, 0, m_Verbosity, + helper::Log("Engine", "SscReaderGeneric", "GetDeferredCommon", + "unknown ShapeID", m_ReaderRank, m_ReaderRank, 0, m_Verbosity, helper::LogMode::FATALERROR); } } @@ -589,9 +552,8 @@ void SscReaderGeneric::GetDeferred(VariableBase &variable, void *data) } } -std::vector -SscReaderGeneric::BlocksInfo(const VariableStruct &variable, - const size_t step) const +std::vector SscReaderGeneric::BlocksInfo(const VariableStruct &variable, + const size_t step) const { std::vector ret; size_t blockID = 0; diff --git a/source/adios2/engine/ssc/SscReaderGeneric.h b/source/adios2/engine/ssc/SscReaderGeneric.h index f4c82adea0..12c8a69943 100644 --- a/source/adios2/engine/ssc/SscReaderGeneric.h +++ b/source/adios2/engine/ssc/SscReaderGeneric.h @@ -28,8 +28,7 @@ class SscReaderGeneric : public SscReaderBase { public: - SscReaderGeneric(IO &io, const std::string &name, const Mode mode, - MPI_Comm comm); + SscReaderGeneric(IO &io, const std::string &name, const Mode mode, MPI_Comm comm); ~SscReaderGeneric() = default; StepStatus BeginStep(const StepMode mode, const float timeoutSeconds, @@ -39,14 +38,14 @@ class SscReaderGeneric : public SscReaderBase void EndStep(const bool readerLocked) final; void Close(const int transportIndex) final; -#define declare_type(T) \ - std::vector::BPInfo> BlocksInfo( \ - const Variable &variable, const size_t step) const final; +#define declare_type(T) \ + std::vector::BPInfo> BlocksInfo(const Variable &variable, \ + const size_t step) const final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type - std::vector - BlocksInfo(const VariableStruct &variable, const size_t step) const final; + std::vector BlocksInfo(const VariableStruct &variable, + const size_t step) const final; void GetDeferred(VariableBase &, void *) final; @@ -70,12 +69,11 @@ class SscReaderGeneric : public SscReaderBase void EndStepFixed(); void EndStepFirstFlexible(); void EndStepConsequentFlexible(); - void CalculatePosition(ssc::BlockVecVec &mapVec, - ssc::RankPosMap &allOverlapRanks); + void CalculatePosition(ssc::BlockVecVec &mapVec, ssc::RankPosMap &allOverlapRanks); template - std::vector::BPInfo> - BlocksInfoCommon(const Variable &variable, const size_t step) const; + std::vector::BPInfo> BlocksInfoCommon(const Variable &variable, + const size_t step) const; template void GetDeferredCommon(Variable &variable, T *data); diff --git a/source/adios2/engine/ssc/SscReaderGeneric.tcc b/source/adios2/engine/ssc/SscReaderGeneric.tcc index cdaae5a54c..451fa4fbc3 100644 --- a/source/adios2/engine/ssc/SscReaderGeneric.tcc +++ b/source/adios2/engine/ssc/SscReaderGeneric.tcc @@ -25,8 +25,7 @@ namespace ssc template std::vector::BPInfo> -SscReaderGeneric::BlocksInfoCommon(const Variable &variable, - const size_t step) const +SscReaderGeneric::BlocksInfoCommon(const Variable &variable, const size_t step) const { std::vector::BPInfo> ret; size_t blockID = 0; @@ -50,22 +49,19 @@ SscReaderGeneric::BlocksInfoCommon(const Variable &variable, { b.IsReverseDims = true; } - if (v.shapeId == ShapeID::GlobalValue || - v.shapeId == ShapeID::LocalValue) + if (v.shapeId == ShapeID::GlobalValue || v.shapeId == ShapeID::LocalValue) { b.IsValue = true; - if (m_CurrentStep == 0 || - m_WriterDefinitionsLocked == false || + if (m_CurrentStep == 0 || m_WriterDefinitionsLocked == false || m_ReaderSelectionsLocked == false) { - std::memcpy(reinterpret_cast(&b.Value), - v.value.data(), v.value.size()); + std::memcpy(reinterpret_cast(&b.Value), v.value.data(), + v.value.size()); } else { std::memcpy(reinterpret_cast(&b.Value), - m_Buffer.data() + v.bufferStart, - v.bufferCount); + m_Buffer.data() + v.bufferStart, v.bufferCount); } } ++blockID; diff --git a/source/adios2/engine/ssc/SscReaderNaive.cpp b/source/adios2/engine/ssc/SscReaderNaive.cpp index 79c5ffa4cc..fc78c16e9d 100644 --- a/source/adios2/engine/ssc/SscReaderNaive.cpp +++ b/source/adios2/engine/ssc/SscReaderNaive.cpp @@ -19,14 +19,12 @@ namespace engine namespace ssc { -SscReaderNaive::SscReaderNaive(IO &io, const std::string &name, const Mode mode, - MPI_Comm comm) +SscReaderNaive::SscReaderNaive(IO &io, const std::string &name, const Mode mode, MPI_Comm comm) : SscReaderBase(io, name, mode, comm) { } -StepStatus SscReaderNaive::BeginStep(const StepMode stepMode, - const float timeoutSeconds, +StepStatus SscReaderNaive::BeginStep(const StepMode stepMode, const float timeoutSeconds, const bool readerLocked) { @@ -39,15 +37,15 @@ StepStatus SscReaderNaive::BeginStep(const StepMode stepMode, if (m_ReaderRank == 0) { - MPI_Recv(&globalSize, 1, MPI_INT, m_WriterMasterStreamRank, 0, - m_StreamComm, MPI_STATUS_IGNORE); + MPI_Recv(&globalSize, 1, MPI_INT, m_WriterMasterStreamRank, 0, m_StreamComm, + MPI_STATUS_IGNORE); m_Buffer.resize(globalSize); // MPI_Recv(m_Buffer.data(), globalSize, MPI_CHAR, // m_WriterMasterStreamRank, 0, m_StreamComm, MPI_STATUS_IGNORE); // TODO: revert when the crusher MPI bug is fixed ssc::Buffer tmp(globalSize); - MPI_Recv(tmp.data(), globalSize, MPI_CHAR, m_WriterMasterStreamRank, 0, - m_StreamComm, MPI_STATUS_IGNORE); + MPI_Recv(tmp.data(), globalSize, MPI_CHAR, m_WriterMasterStreamRank, 0, m_StreamComm, + MPI_STATUS_IGNORE); std::memcpy(m_Buffer.data(), tmp.data(), globalSize); } @@ -76,8 +74,7 @@ StepStatus SscReaderNaive::BeginStep(const StepMode stepMode, if (shapeId == 65) { - DeserializeStructDefinitions(m_Buffer, pos, m_IO, true, - m_StructDefinitions); + DeserializeStructDefinitions(m_Buffer, pos, m_IO, true, m_StructDefinitions); } else if (shapeId == 66) { @@ -87,52 +84,42 @@ StepStatus SscReaderNaive::BeginStep(const StepMode stepMode, { pos += 4; ssc::BlockInfo b; - DeserializeVariable(m_Buffer, static_cast(shapeId), - pos, b, m_IO, true, m_StructDefinitions); + DeserializeVariable(m_Buffer, static_cast(shapeId), pos, b, m_IO, true, + m_StructDefinitions); b.bufferStart += start; m_BlockMap[b.name].push_back(b); - if (b.shapeId == ShapeID::GlobalValue || - b.shapeId == ShapeID::LocalValue) + if (b.shapeId == ShapeID::GlobalValue || b.shapeId == ShapeID::LocalValue) { std::vector value(b.bufferCount); std::memcpy(value.data(), b.value.data(), b.value.size()); if (b.type == DataType::String) { - auto variable = - m_IO.InquireVariable(b.name); + auto variable = m_IO.InquireVariable(b.name); if (variable) { - variable->m_Value = - std::string(value.begin(), value.end()); - variable->m_Min = - std::string(value.begin(), value.end()); - variable->m_Max = - std::string(value.begin(), value.end()); + variable->m_Value = std::string(value.begin(), value.end()); + variable->m_Min = std::string(value.begin(), value.end()); + variable->m_Max = std::string(value.begin(), value.end()); } } -#define declare_type(T) \ - else if (b.type == helper::GetDataType()) \ - { \ - auto variable = m_IO.InquireVariable(b.name); \ - if (variable) \ - { \ - std::memcpy(reinterpret_cast(&variable->m_Min), \ - value.data(), value.size()); \ - std::memcpy(reinterpret_cast(&variable->m_Max), \ - value.data(), value.size()); \ - std::memcpy(reinterpret_cast(&variable->m_Value), \ - value.data(), value.size()); \ - } \ +#define declare_type(T) \ + else if (b.type == helper::GetDataType()) \ + { \ + auto variable = m_IO.InquireVariable(b.name); \ + if (variable) \ + { \ + std::memcpy(reinterpret_cast(&variable->m_Min), value.data(), value.size()); \ + std::memcpy(reinterpret_cast(&variable->m_Max), value.data(), value.size()); \ + std::memcpy(reinterpret_cast(&variable->m_Value), value.data(), value.size()); \ + } \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type else { - helper::Log("Engine", "SscReaderNaive", "BeginStep", - "unknown data type", m_ReaderRank, - m_ReaderRank, 0, m_Verbosity, - helper::FATALERROR); + helper::Log("Engine", "SscReaderNaive", "BeginStep", "unknown data type", + m_ReaderRank, m_ReaderRank, 0, m_Verbosity, helper::FATALERROR); } } } @@ -150,11 +137,11 @@ void SscReaderNaive::PerformGets() {} void SscReaderNaive::Close(const int transportIndex) {} -#define declare_type(T) \ - std::vector::BPInfo> SscReaderNaive::BlocksInfo( \ - const Variable &variable, const size_t step) const \ - { \ - return BlocksInfoCommon(variable, step); \ +#define declare_type(T) \ + std::vector::BPInfo> SscReaderNaive::BlocksInfo( \ + const Variable &variable, const size_t step) const \ + { \ + return BlocksInfoCommon(variable, step); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -171,8 +158,7 @@ void SscReaderNaive::GetDeferred(VariableBase &variable, void *data) if (b.name == variable.m_Name) { *dataString = std::string(m_Buffer.data() + b.bufferStart, - m_Buffer.data() + b.bufferStart + - b.bufferCount); + m_Buffer.data() + b.bufferStart + b.bufferCount); variableString->m_Value = *dataString; variableString->m_Min = *dataString; variableString->m_Max = *dataString; @@ -196,28 +182,23 @@ void SscReaderNaive::GetDeferred(VariableBase &variable, void *data) for (const auto &b : m_BlockMap[variable.m_Name]) { - if (b.shapeId == ShapeID::GlobalArray || - b.shapeId == ShapeID::LocalArray) + if (b.shapeId == ShapeID::GlobalArray || b.shapeId == ShapeID::LocalArray) { - helper::NdCopy(m_Buffer.data() + b.bufferStart, - helper::CoreDims(b.start), helper::CoreDims(b.count), - true, true, reinterpret_cast(data), vStart, - vCount, true, true, - static_cast(variable.m_ElementSize), - helper::CoreDims(b.start), helper::CoreDims(b.count), - vMemStart, vMemCount); + helper::NdCopy(m_Buffer.data() + b.bufferStart, helper::CoreDims(b.start), + helper::CoreDims(b.count), true, true, reinterpret_cast(data), + vStart, vCount, true, true, static_cast(variable.m_ElementSize), + helper::CoreDims(b.start), helper::CoreDims(b.count), vMemStart, + vMemCount); } - else if (b.shapeId == ShapeID::GlobalValue || - b.shapeId == ShapeID::LocalValue) + else if (b.shapeId == ShapeID::GlobalValue || b.shapeId == ShapeID::LocalValue) { std::memcpy(data, m_Buffer.data() + b.bufferStart, b.bufferCount); } } } -std::vector -SscReaderNaive::BlocksInfo(const VariableStruct &variable, - const size_t step) const +std::vector SscReaderNaive::BlocksInfo(const VariableStruct &variable, + const size_t step) const { std::vector ret; size_t blockID = 0; diff --git a/source/adios2/engine/ssc/SscReaderNaive.h b/source/adios2/engine/ssc/SscReaderNaive.h index 409f2acd03..5e815a5823 100644 --- a/source/adios2/engine/ssc/SscReaderNaive.h +++ b/source/adios2/engine/ssc/SscReaderNaive.h @@ -28,8 +28,7 @@ class SscReaderNaive : public SscReaderBase { public: - SscReaderNaive(IO &io, const std::string &name, const Mode mode, - MPI_Comm comm); + SscReaderNaive(IO &io, const std::string &name, const Mode mode, MPI_Comm comm); ~SscReaderNaive() = default; StepStatus BeginStep(const StepMode mode, const float timeoutSeconds, @@ -39,21 +38,21 @@ class SscReaderNaive : public SscReaderBase void EndStep(const bool readerLocked) final; void Close(const int transportIndex) final; -#define declare_type(T) \ - std::vector::BPInfo> BlocksInfo( \ - const Variable &variable, const size_t step) const final; +#define declare_type(T) \ + std::vector::BPInfo> BlocksInfo(const Variable &variable, \ + const size_t step) const final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type - std::vector - BlocksInfo(const VariableStruct &variable, const size_t step) const final; + std::vector BlocksInfo(const VariableStruct &variable, + const size_t step) const final; void GetDeferred(VariableBase &, void *) final; private: template - std::vector::BPInfo> - BlocksInfoCommon(const Variable &variable, const size_t step) const; + std::vector::BPInfo> BlocksInfoCommon(const Variable &variable, + const size_t step) const; template void GetDeferredCommon(Variable &variable, T *data); diff --git a/source/adios2/engine/ssc/SscReaderNaive.tcc b/source/adios2/engine/ssc/SscReaderNaive.tcc index e24f69098c..f73b079eaf 100644 --- a/source/adios2/engine/ssc/SscReaderNaive.tcc +++ b/source/adios2/engine/ssc/SscReaderNaive.tcc @@ -25,8 +25,7 @@ namespace ssc template std::vector::BPInfo> -SscReaderNaive::BlocksInfoCommon(const Variable &variable, - const size_t step) const +SscReaderNaive::BlocksInfoCommon(const Variable &variable, const size_t step) const { std::vector::BPInfo> ret; size_t blockID = 0; @@ -48,12 +47,10 @@ SscReaderNaive::BlocksInfoCommon(const Variable &variable, { b.IsReverseDims = true; } - if (v.shapeId == ShapeID::GlobalValue || - v.shapeId == ShapeID::LocalValue) + if (v.shapeId == ShapeID::GlobalValue || v.shapeId == ShapeID::LocalValue) { b.IsValue = true; - std::memcpy(reinterpret_cast(&b.Value), v.value.data(), - v.value.size()); + std::memcpy(reinterpret_cast(&b.Value), v.value.data(), v.value.size()); } ++blockID; } diff --git a/source/adios2/engine/ssc/SscWriter.cpp b/source/adios2/engine/ssc/SscWriter.cpp index 36253ce89d..b407332fd0 100644 --- a/source/adios2/engine/ssc/SscWriter.cpp +++ b/source/adios2/engine/ssc/SscWriter.cpp @@ -22,8 +22,7 @@ namespace core namespace engine { -SscWriter::SscWriter(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +SscWriter::SscWriter(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("SscWriter", io, name, mode, std::move(comm)) { PERFSTUBS_SCOPED_TIMER_FUNC(); @@ -32,18 +31,17 @@ SscWriter::SscWriter(IO &io, const std::string &name, const Mode mode, helper::GetParameter(m_IO.m_Parameters, "Verbose", m_Verbosity); helper::Log("Engine", "SscWriter", "SscWriter", m_EngineMode, - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); if (m_EngineMode == "generic") { - m_EngineInstance = std::make_shared( - io, name, mode, CommAsMPI(m_Comm)); + m_EngineInstance = + std::make_shared(io, name, mode, CommAsMPI(m_Comm)); } else if (m_EngineMode == "naive") { - m_EngineInstance = std::make_shared( - io, name, mode, CommAsMPI(m_Comm)); + m_EngineInstance = std::make_shared(io, name, mode, CommAsMPI(m_Comm)); } m_IsOpen = true; } @@ -61,21 +59,16 @@ StepStatus SscWriter::BeginStep(StepMode mode, const float timeoutSeconds) { PERFSTUBS_SCOPED_TIMER_FUNC(); - auto ret = m_EngineInstance->BeginStep(mode, timeoutSeconds, - m_WriterDefinitionsLocked); + auto ret = m_EngineInstance->BeginStep(mode, timeoutSeconds, m_WriterDefinitionsLocked); - helper::Log("Engine", "SscWriter", "BeginStep", - std::to_string(CurrentStep()), - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "SscWriter", "BeginStep", std::to_string(CurrentStep()), + m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); return ret; } -size_t SscWriter::CurrentStep() const -{ - return m_EngineInstance->CurrentStep(); -} +size_t SscWriter::CurrentStep() const { return m_EngineInstance->CurrentStep(); } void SscWriter::PerformPuts() { @@ -88,8 +81,8 @@ void SscWriter::EndStep() PERFSTUBS_SCOPED_TIMER_FUNC(); helper::Log("Engine", "SscWriter", "EndStep", std::to_string(CurrentStep()), - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); m_EngineInstance->EndStep(m_WriterDefinitionsLocked); } @@ -98,30 +91,29 @@ void SscWriter::DoClose(const int transportIndex) { PERFSTUBS_SCOPED_TIMER_FUNC(); - helper::Log("Engine", "SscWriter", "Close", m_Name, - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "SscWriter", "Close", m_Name, m_Verbosity >= 10 ? m_Comm.Rank() : 0, + m_Comm.Rank(), 5, m_Verbosity, helper::LogMode::INFO); m_EngineInstance->Close(transportIndex); } -#define declare_type(T) \ - void SscWriter::DoPutSync(Variable &variable, const T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER_FUNC(); \ - helper::Log("Engine", "SscWriter", "DoPutSync", variable.m_Name, \ - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, \ - m_Verbosity, helper::LogMode::INFO); \ - m_EngineInstance->PutDeferred(variable, data); \ - m_EngineInstance->PerformPuts(); \ - } \ - void SscWriter::DoPutDeferred(Variable &variable, const T *data) \ - { \ - PERFSTUBS_SCOPED_TIMER_FUNC(); \ - helper::Log("Engine", "SscWriter", "DoPutDeferred", variable.m_Name, \ - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, \ - m_Verbosity, helper::LogMode::INFO); \ - m_EngineInstance->PutDeferred(variable, data); \ +#define declare_type(T) \ + void SscWriter::DoPutSync(Variable &variable, const T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER_FUNC(); \ + helper::Log("Engine", "SscWriter", "DoPutSync", variable.m_Name, \ + m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, m_Verbosity, \ + helper::LogMode::INFO); \ + m_EngineInstance->PutDeferred(variable, data); \ + m_EngineInstance->PerformPuts(); \ + } \ + void SscWriter::DoPutDeferred(Variable &variable, const T *data) \ + { \ + PERFSTUBS_SCOPED_TIMER_FUNC(); \ + helper::Log("Engine", "SscWriter", "DoPutDeferred", variable.m_Name, \ + m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, m_Verbosity, \ + helper::LogMode::INFO); \ + m_EngineInstance->PutDeferred(variable, data); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -130,8 +122,8 @@ void SscWriter::DoPutStructSync(VariableStruct &variable, const void *data) { PERFSTUBS_SCOPED_TIMER_FUNC(); helper::Log("Engine", "SscWriter", "DoPutSync", variable.m_Name, - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); m_EngineInstance->PutDeferred(variable, data); m_EngineInstance->PerformPuts(); } @@ -139,8 +131,8 @@ void SscWriter::DoPutStructDeferred(VariableStruct &variable, const void *data) { PERFSTUBS_SCOPED_TIMER_FUNC(); helper::Log("Engine", "SscWriter", "DoPutDeferred", variable.m_Name, - m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, - m_Verbosity, helper::LogMode::INFO); + m_Verbosity >= 10 ? m_Comm.Rank() : 0, m_Comm.Rank(), 5, m_Verbosity, + helper::LogMode::INFO); m_EngineInstance->PutDeferred(variable, data); } diff --git a/source/adios2/engine/ssc/SscWriter.h b/source/adios2/engine/ssc/SscWriter.h index 155726511d..564bb8b4d2 100644 --- a/source/adios2/engine/ssc/SscWriter.h +++ b/source/adios2/engine/ssc/SscWriter.h @@ -25,21 +25,19 @@ class SscWriter : public Engine { public: - SscWriter(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + SscWriter(IO &io, const std::string &name, const Mode mode, helper::Comm comm); ~SscWriter(); - StepStatus BeginStep( - StepMode mode, - const float timeoutSeconds = std::numeric_limits::max()) final; + StepStatus BeginStep(StepMode mode, + const float timeoutSeconds = std::numeric_limits::max()) final; size_t CurrentStep() const final; void PerformPuts() final; void EndStep() final; void Flush(const int transportIndex = -1) final; private: -#define declare_type(T) \ - void DoPutSync(Variable &, const T *) final; \ +#define declare_type(T) \ + void DoPutSync(Variable &, const T *) final; \ void DoPutDeferred(Variable &, const T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/ssc/SscWriterBase.cpp b/source/adios2/engine/ssc/SscWriterBase.cpp index 2e8a35b328..9c319df280 100644 --- a/source/adios2/engine/ssc/SscWriterBase.cpp +++ b/source/adios2/engine/ssc/SscWriterBase.cpp @@ -21,8 +21,7 @@ namespace engine namespace ssc { -SscWriterBase::SscWriterBase(IO &io, const std::string &name, const Mode mode, - MPI_Comm comm) +SscWriterBase::SscWriterBase(IO &io, const std::string &name, const Mode mode, MPI_Comm comm) : m_Name(name), m_IO(io) { @@ -48,9 +47,8 @@ void SscWriterBase::SyncMpiPattern(MPI_Comm comm) MPI_Group writerGroup; MPI_Comm readerComm; - helper::HandshakeComm(m_Name, 'w', m_OpenTimeoutSecs, comm, streamGroup, - writerGroup, m_ReaderGroup, m_StreamComm, - m_WriterComm, readerComm, m_Verbosity); + helper::HandshakeComm(m_Name, 'w', m_OpenTimeoutSecs, comm, streamGroup, writerGroup, + m_ReaderGroup, m_StreamComm, m_WriterComm, readerComm, m_Verbosity); MPI_Comm_rank(comm, &m_WriterRank); MPI_Comm_size(comm, &m_WriterSize); @@ -63,12 +61,12 @@ void SscWriterBase::SyncMpiPattern(MPI_Comm comm) { writerMasterStreamRank = m_StreamRank; } - MPI_Allreduce(&writerMasterStreamRank, &m_WriterMasterStreamRank, 1, - MPI_INT, MPI_MAX, m_StreamComm); + MPI_Allreduce(&writerMasterStreamRank, &m_WriterMasterStreamRank, 1, MPI_INT, MPI_MAX, + m_StreamComm); int readerMasterStreamRank = -1; - MPI_Allreduce(&readerMasterStreamRank, &m_ReaderMasterStreamRank, 1, - MPI_INT, MPI_MAX, m_StreamComm); + MPI_Allreduce(&readerMasterStreamRank, &m_ReaderMasterStreamRank, 1, MPI_INT, MPI_MAX, + m_StreamComm); } } diff --git a/source/adios2/engine/ssc/SscWriterBase.h b/source/adios2/engine/ssc/SscWriterBase.h index a481d2f282..6258de4523 100644 --- a/source/adios2/engine/ssc/SscWriterBase.h +++ b/source/adios2/engine/ssc/SscWriterBase.h @@ -28,12 +28,10 @@ class SscWriterBase { public: - SscWriterBase(IO &io, const std::string &name, const Mode mode, - MPI_Comm comm); + SscWriterBase(IO &io, const std::string &name, const Mode mode, MPI_Comm comm); virtual ~SscWriterBase(); - virtual StepStatus BeginStep(const StepMode mode, - const float timeoutSeconds, + virtual StepStatus BeginStep(const StepMode mode, const float timeoutSeconds, const bool writerLocked) = 0; virtual size_t CurrentStep() = 0; virtual void PerformPuts() = 0; diff --git a/source/adios2/engine/ssc/SscWriterGeneric.cpp b/source/adios2/engine/ssc/SscWriterGeneric.cpp index f11c4ee940..2d43f4c688 100644 --- a/source/adios2/engine/ssc/SscWriterGeneric.cpp +++ b/source/adios2/engine/ssc/SscWriterGeneric.cpp @@ -19,14 +19,12 @@ namespace engine namespace ssc { -SscWriterGeneric::SscWriterGeneric(IO &io, const std::string &name, - const Mode mode, MPI_Comm comm) +SscWriterGeneric::SscWriterGeneric(IO &io, const std::string &name, const Mode mode, MPI_Comm comm) : SscWriterBase(io, name, mode, comm) { } -StepStatus SscWriterGeneric::BeginStep(const StepMode mode, - const float timeoutSeconds, +StepStatus SscWriterGeneric::BeginStep(const StepMode mode, const float timeoutSeconds, const bool writerLocked) { @@ -54,8 +52,8 @@ StepStatus SscWriterGeneric::BeginStep(const StepMode mode, { if (m_WriterDefinitionsLocked && m_ReaderSelectionsLocked) { - MPI_Waitall(static_cast(m_MpiRequests.size()), - m_MpiRequests.data(), MPI_STATUSES_IGNORE); + MPI_Waitall(static_cast(m_MpiRequests.size()), m_MpiRequests.data(), + MPI_STATUSES_IGNORE); m_MpiRequests.clear(); } else @@ -80,8 +78,7 @@ void SscWriterGeneric::EndStep(const bool writerLocked) { if (m_Threading) { - m_EndStepThread = - std::thread(&SscWriterGeneric::EndStepFirst, this); + m_EndStepThread = std::thread(&SscWriterGeneric::EndStepFirst, this); } else { @@ -98,8 +95,7 @@ void SscWriterGeneric::EndStep(const bool writerLocked) { if (m_Threading) { - m_EndStepThread = std::thread( - &SscWriterGeneric::EndStepConsequentFlexible, this); + m_EndStepThread = std::thread(&SscWriterGeneric::EndStepConsequentFlexible, this); } else { @@ -120,8 +116,8 @@ void SscWriterGeneric::Close(const int transportIndex) { if (m_CurrentStep > 0) { - MPI_Waitall(static_cast(m_MpiRequests.size()), - m_MpiRequests.data(), MPI_STATUSES_IGNORE); + MPI_Waitall(static_cast(m_MpiRequests.size()), m_MpiRequests.data(), + MPI_STATUSES_IGNORE); m_MpiRequests.clear(); } @@ -131,11 +127,9 @@ void SscWriterGeneric::Close(const int transportIndex) for (const auto &i : m_AllSendingReaderRanks) { requests.emplace_back(); - MPI_Isend(m_Buffer.data(), 1, MPI_CHAR, i.first, 0, m_StreamComm, - &requests.back()); + MPI_Isend(m_Buffer.data(), 1, MPI_CHAR, i.first, 0, m_StreamComm, &requests.back()); } - MPI_Waitall(static_cast(requests.size()), requests.data(), - MPI_STATUS_IGNORE); + MPI_Waitall(static_cast(requests.size()), requests.data(), MPI_STATUS_IGNORE); } else { @@ -185,21 +179,18 @@ void SscWriterGeneric::PutDeferred(VariableBase &variable, const void *data) std::memcpy(m_Buffer.data() + b.bufferStart, dataString->data(), dataString->size()); b.value.resize(dataString->size()); - std::memcpy(b.value.data(), dataString->data(), - dataString->size()); + std::memcpy(b.value.data(), dataString->data(), dataString->size()); } else { - helper::Throw( - "Engine", "SSCWriter", "PutDeferredCommon", - "IO pattern changed after locking"); + helper::Throw("Engine", "SSCWriter", "PutDeferredCommon", + "IO pattern changed after locking"); } } return; } - if ((variable.m_ShapeID == ShapeID::GlobalValue || - variable.m_ShapeID == ShapeID::LocalValue || + if ((variable.m_ShapeID == ShapeID::GlobalValue || variable.m_ShapeID == ShapeID::LocalValue || variable.m_Type == DataType::String) && m_WriterRank != 0) { @@ -221,8 +212,7 @@ void SscWriterGeneric::PutDeferred(VariableBase &variable, const void *data) for (const auto &b : m_GlobalWritePattern[m_StreamRank]) { if (b.name == variable.m_Name && ssc::AreSameDims(vStart, b.start) && - ssc::AreSameDims(vCount, b.count) && - ssc::AreSameDims(vShape, b.shape)) + ssc::AreSameDims(vCount, b.count) && ssc::AreSameDims(vShape, b.shape)) { std::memcpy(m_Buffer.data() + b.bufferStart, data, b.bufferCount); found = true; @@ -244,12 +234,10 @@ void SscWriterGeneric::PutDeferred(VariableBase &variable, const void *data) b.count = vCount; b.elementSize = variable.m_ElementSize; b.bufferStart = m_Buffer.size(); - b.bufferCount = - ssc::TotalDataSize(b.count, b.elementSize, b.shapeId); + b.bufferCount = ssc::TotalDataSize(b.count, b.elementSize, b.shapeId); m_Buffer.resize(b.bufferStart + b.bufferCount); std::memcpy(m_Buffer.data() + b.bufferStart, data, b.bufferCount); - if (b.shapeId == ShapeID::GlobalValue || - b.shapeId == ShapeID::LocalValue) + if (b.shapeId == ShapeID::GlobalValue || b.shapeId == ShapeID::LocalValue) { b.value.resize(variable.m_ElementSize); std::memcpy(b.value.data(), data, b.bufferCount); @@ -262,9 +250,8 @@ void SscWriterGeneric::PutDeferred(VariableBase &variable, const void *data) } else { - helper::Throw( - "Engine", "SSCWriter", "PutDeferredCommon", - "IO pattern changed after locking"); + helper::Throw("Engine", "SSCWriter", "PutDeferredCommon", + "IO pattern changed after locking"); } } } @@ -272,8 +259,7 @@ void SscWriterGeneric::PutDeferred(VariableBase &variable, const void *data) void SscWriterGeneric::EndStepFirst() { SyncWritePattern(); - MPI_Win_create(m_Buffer.data(), m_Buffer.size(), 1, MPI_INFO_NULL, - m_StreamComm, &m_MpiWin); + MPI_Win_create(m_Buffer.data(), m_Buffer.size(), 1, MPI_INFO_NULL, m_StreamComm, &m_MpiWin); MPI_Win_free(&m_MpiWin); SyncReadPattern(); } @@ -283,32 +269,29 @@ void SscWriterGeneric::EndStepConsequentFixed() for (const auto &i : m_AllSendingReaderRanks) { m_MpiRequests.emplace_back(); - MPI_Isend(m_Buffer.data(), static_cast(m_Buffer.size()), MPI_CHAR, - i.first, 0, m_StreamComm, &m_MpiRequests.back()); + MPI_Isend(m_Buffer.data(), static_cast(m_Buffer.size()), MPI_CHAR, i.first, 0, + m_StreamComm, &m_MpiRequests.back()); } } void SscWriterGeneric::EndStepConsequentFlexible() { SyncWritePattern(); - MPI_Win_create(m_Buffer.data(), m_Buffer.size(), 1, MPI_INFO_NULL, - m_StreamComm, &m_MpiWin); + MPI_Win_create(m_Buffer.data(), m_Buffer.size(), 1, MPI_INFO_NULL, m_StreamComm, &m_MpiWin); } void SscWriterGeneric::SyncWritePattern(bool finalStep) { - helper::Log("Engine", "SscWriter", "SyncWritePattern", "", - m_Verbosity >= 10 ? m_WriterRank : 0, m_WriterRank, 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "SscWriter", "SyncWritePattern", "", m_Verbosity >= 10 ? m_WriterRank : 0, + m_WriterRank, 5, m_Verbosity, helper::LogMode::INFO); ssc::Buffer localBuffer(8); localBuffer.value() = 8; if (m_WriterRank == 0) { - ssc::SerializeStructDefinitions(m_IO.m_ADIOS.m_StructDefinitions, - localBuffer); + ssc::SerializeStructDefinitions(m_IO.m_ADIOS.m_StructDefinitions, localBuffer); } if (m_WriterRank == m_WriterSize - 1) @@ -316,19 +299,17 @@ void SscWriterGeneric::SyncWritePattern(bool finalStep) ssc::SerializeAttributes(m_IO, localBuffer); } - ssc::SerializeVariables(m_GlobalWritePattern[m_StreamRank], localBuffer, - m_StreamRank); + ssc::SerializeVariables(m_GlobalWritePattern[m_StreamRank], localBuffer, m_StreamRank); ssc::Buffer globalBuffer; ssc::AggregateMetadata(localBuffer, globalBuffer, m_WriterComm, finalStep, m_WriterDefinitionsLocked); - ssc::BroadcastMetadata(globalBuffer, m_WriterMasterStreamRank, - m_StreamComm); + ssc::BroadcastMetadata(globalBuffer, m_WriterMasterStreamRank, m_StreamComm); - ssc::Deserialize(globalBuffer, m_GlobalWritePattern, m_IO, false, false, - false, m_StructDefinitions); + ssc::Deserialize(globalBuffer, m_GlobalWritePattern, m_IO, false, false, false, + m_StructDefinitions); if (m_Verbosity >= 20 && m_WriterRank == 0) { @@ -339,21 +320,19 @@ void SscWriterGeneric::SyncWritePattern(bool finalStep) void SscWriterGeneric::SyncReadPattern() { - helper::Log("Engine", "SscWriter", "SyncReadPattern", "", - m_Verbosity >= 10 ? m_WriterRank : 0, m_WriterRank, 5, - m_Verbosity, helper::LogMode::INFO); + helper::Log("Engine", "SscWriter", "SyncReadPattern", "", m_Verbosity >= 10 ? m_WriterRank : 0, + m_WriterRank, 5, m_Verbosity, helper::LogMode::INFO); ssc::Buffer globalBuffer; - ssc::BroadcastMetadata(globalBuffer, m_ReaderMasterStreamRank, - m_StreamComm); + ssc::BroadcastMetadata(globalBuffer, m_ReaderMasterStreamRank, m_StreamComm); m_ReaderSelectionsLocked = globalBuffer[1]; - ssc::Deserialize(globalBuffer, m_GlobalReadPattern, m_IO, false, false, - false, m_StructDefinitions); - m_AllSendingReaderRanks = ssc::CalculateOverlap( - m_GlobalReadPattern, m_GlobalWritePattern[m_StreamRank]); + ssc::Deserialize(globalBuffer, m_GlobalReadPattern, m_IO, false, false, false, + m_StructDefinitions); + m_AllSendingReaderRanks = + ssc::CalculateOverlap(m_GlobalReadPattern, m_GlobalWritePattern[m_StreamRank]); CalculatePosition(m_GlobalWritePattern, m_GlobalReadPattern, m_WriterRank, m_AllSendingReaderRanks); @@ -365,8 +344,7 @@ void SscWriterGeneric::SyncReadPattern() if (i == m_WriterRank) { ssc::PrintRankPosMap(m_AllSendingReaderRanks, - "Rank Pos Map for Writer " + - std::to_string(m_WriterRank)); + "Rank Pos Map for Writer " + std::to_string(m_WriterRank)); } } MPI_Barrier(m_WriterComm); @@ -374,15 +352,13 @@ void SscWriterGeneric::SyncReadPattern() } void SscWriterGeneric::CalculatePosition(ssc::BlockVecVec &writerVecVec, - ssc::BlockVecVec &readerVecVec, - const int writerRank, + ssc::BlockVecVec &readerVecVec, const int writerRank, ssc::RankPosMap &allOverlapRanks) { for (auto &overlapRank : allOverlapRanks) { auto &readerRankMap = readerVecVec[overlapRank.first]; - auto currentReaderOverlapWriterRanks = - CalculateOverlap(writerVecVec, readerRankMap); + auto currentReaderOverlapWriterRanks = CalculateOverlap(writerVecVec, readerRankMap); size_t bufferPosition = 0; for (int rank = 0; rank < static_cast(writerVecVec.size()); ++rank) { @@ -400,13 +376,11 @@ void SscWriterGeneric::CalculatePosition(ssc::BlockVecVec &writerVecVec, currentReaderOverlapWriterRanks[rank].first = bufferPosition; auto &bv = writerVecVec[rank]; size_t currentRankTotalSize = TotalDataSize(bv) + 1; - currentReaderOverlapWriterRanks[rank].second = - currentRankTotalSize; + currentReaderOverlapWriterRanks[rank].second = currentRankTotalSize; bufferPosition += currentRankTotalSize; } } - allOverlapRanks[overlapRank.first] = - currentReaderOverlapWriterRanks[writerRank]; + allOverlapRanks[overlapRank.first] = currentReaderOverlapWriterRanks[writerRank]; } } diff --git a/source/adios2/engine/ssc/SscWriterGeneric.h b/source/adios2/engine/ssc/SscWriterGeneric.h index fa057551e9..85b1e28813 100644 --- a/source/adios2/engine/ssc/SscWriterGeneric.h +++ b/source/adios2/engine/ssc/SscWriterGeneric.h @@ -28,8 +28,7 @@ class SscWriterGeneric : public SscWriterBase { public: - SscWriterGeneric(IO &io, const std::string &name, const Mode mode, - MPI_Comm comm); + SscWriterGeneric(IO &io, const std::string &name, const Mode mode, MPI_Comm comm); ~SscWriterGeneric() = default; StepStatus BeginStep(const StepMode mode, const float timeoutSeconds, @@ -61,9 +60,8 @@ class SscWriterGeneric : public SscWriterBase void EndStepFirst(); void EndStepConsequentFixed(); void EndStepConsequentFlexible(); - void CalculatePosition(ssc::BlockVecVec &writerMapVec, - ssc::BlockVecVec &readerMapVec, const int writerRank, - ssc::RankPosMap &allOverlapRanks); + void CalculatePosition(ssc::BlockVecVec &writerMapVec, ssc::BlockVecVec &readerMapVec, + const int writerRank, ssc::RankPosMap &allOverlapRanks); }; } diff --git a/source/adios2/engine/ssc/SscWriterNaive.cpp b/source/adios2/engine/ssc/SscWriterNaive.cpp index 282d94c69a..00804ef754 100644 --- a/source/adios2/engine/ssc/SscWriterNaive.cpp +++ b/source/adios2/engine/ssc/SscWriterNaive.cpp @@ -19,14 +19,12 @@ namespace engine namespace ssc { -SscWriterNaive::SscWriterNaive(IO &io, const std::string &name, const Mode mode, - MPI_Comm comm) +SscWriterNaive::SscWriterNaive(IO &io, const std::string &name, const Mode mode, MPI_Comm comm) : SscWriterBase(io, name, mode, comm) { } -StepStatus SscWriterNaive::BeginStep(const StepMode mode, - const float timeoutSeconds, +StepStatus SscWriterNaive::BeginStep(const StepMode mode, const float timeoutSeconds, const bool writerLocked) { ++m_CurrentStep; @@ -49,8 +47,7 @@ void SscWriterNaive::EndStep(const bool writerLocked) if (m_WriterRank == 0) { - ssc::SerializeStructDefinitions(m_IO.m_ADIOS.m_StructDefinitions, - m_Buffer); + ssc::SerializeStructDefinitions(m_IO.m_ADIOS.m_StructDefinitions, m_Buffer); } if (m_WriterRank == m_WriterSize - 1) @@ -62,8 +59,7 @@ void SscWriterNaive::EndStep(const bool writerLocked) int localSize = static_cast(m_Buffer.value()); std::vector localSizes(m_WriterSize); - MPI_Gather(&localSize, 1, MPI_INT, localSizes.data(), 1, MPI_INT, 0, - m_WriterComm); + MPI_Gather(&localSize, 1, MPI_INT, localSizes.data(), 1, MPI_INT, 0, m_WriterComm); int globalSize = std::accumulate(localSizes.begin(), localSizes.end(), 0); ssc::Buffer globalBuffer(globalSize); @@ -73,15 +69,14 @@ void SscWriterNaive::EndStep(const bool writerLocked) displs[i] = displs[i - 1] + localSizes[i - 1]; } - MPI_Gatherv(m_Buffer.data(), localSize, MPI_CHAR, globalBuffer.data(), - localSizes.data(), displs.data(), MPI_CHAR, 0, m_WriterComm); + MPI_Gatherv(m_Buffer.data(), localSize, MPI_CHAR, globalBuffer.data(), localSizes.data(), + displs.data(), MPI_CHAR, 0, m_WriterComm); if (m_WriterRank == 0) { - MPI_Send(&globalSize, 1, MPI_INT, m_ReaderMasterStreamRank, 0, + MPI_Send(&globalSize, 1, MPI_INT, m_ReaderMasterStreamRank, 0, m_StreamComm); + MPI_Send(globalBuffer.data(), globalSize, MPI_CHAR, m_ReaderMasterStreamRank, 0, m_StreamComm); - MPI_Send(globalBuffer.data(), globalSize, MPI_CHAR, - m_ReaderMasterStreamRank, 0, m_StreamComm); } } @@ -92,10 +87,9 @@ void SscWriterNaive::Close(const int transportIndex) ssc::Buffer globalBuffer(globalSize); if (m_WriterRank == 0) { - MPI_Send(&globalSize, 1, MPI_INT, m_ReaderMasterStreamRank, 0, + MPI_Send(&globalSize, 1, MPI_INT, m_ReaderMasterStreamRank, 0, m_StreamComm); + MPI_Send(globalBuffer.data(), globalSize, MPI_CHAR, m_ReaderMasterStreamRank, 0, m_StreamComm); - MPI_Send(globalBuffer.data(), globalSize, MPI_CHAR, - m_ReaderMasterStreamRank, 0, m_StreamComm); } } @@ -116,15 +110,13 @@ void SscWriterNaive::PutDeferred(VariableBase &variable, const void *data) b.bufferStart = m_Buffer.size(); b.bufferCount = dataString->size(); m_Buffer.resize(b.bufferStart + b.bufferCount); - std::memcpy(m_Buffer.data() + b.bufferStart, dataString->data(), - dataString->size()); + std::memcpy(m_Buffer.data() + b.bufferStart, dataString->data(), dataString->size()); b.value.resize(dataString->size()); std::memcpy(b.value.data(), dataString->data(), dataString->size()); return; } - if ((variable.m_ShapeID == ShapeID::GlobalValue || - variable.m_ShapeID == ShapeID::LocalValue || + if ((variable.m_ShapeID == ShapeID::GlobalValue || variable.m_ShapeID == ShapeID::LocalValue || variable.m_Type == DataType::String) && m_WriterRank != 0) { @@ -146,8 +138,7 @@ void SscWriterNaive::PutDeferred(VariableBase &variable, const void *data) for (const auto &b : m_Metadata) { if (b.name == variable.m_Name && ssc::AreSameDims(vStart, b.start) && - ssc::AreSameDims(vCount, b.count) && - ssc::AreSameDims(vShape, b.shape)) + ssc::AreSameDims(vCount, b.count) && ssc::AreSameDims(vShape, b.shape)) { std::memcpy(m_Buffer.data() + b.bufferStart, data, b.bufferCount); found = true; @@ -169,8 +160,7 @@ void SscWriterNaive::PutDeferred(VariableBase &variable, const void *data) b.bufferCount = ssc::TotalDataSize(b.count, b.elementSize, b.shapeId); m_Buffer.resize(b.bufferStart + b.bufferCount); std::memcpy(m_Buffer.data() + b.bufferStart, data, b.bufferCount); - if (b.shapeId == ShapeID::GlobalValue || - b.shapeId == ShapeID::LocalValue) + if (b.shapeId == ShapeID::GlobalValue || b.shapeId == ShapeID::LocalValue) { b.value.resize(variable.m_ElementSize); std::memcpy(b.value.data(), data, b.bufferCount); diff --git a/source/adios2/engine/ssc/SscWriterNaive.h b/source/adios2/engine/ssc/SscWriterNaive.h index a5deb56487..cb01d491cb 100644 --- a/source/adios2/engine/ssc/SscWriterNaive.h +++ b/source/adios2/engine/ssc/SscWriterNaive.h @@ -28,8 +28,7 @@ class SscWriterNaive : public SscWriterBase { public: - SscWriterNaive(IO &io, const std::string &name, const Mode mode, - MPI_Comm comm); + SscWriterNaive(IO &io, const std::string &name, const Mode mode, MPI_Comm comm); ~SscWriterNaive() = default; StepStatus BeginStep(const StepMode mode, const float timeoutSeconds, diff --git a/source/adios2/engine/sst/SstParamParser.cpp b/source/adios2/engine/sst/SstParamParser.cpp index 190551ad3a..ee8bd9a8cc 100644 --- a/source/adios2/engine/sst/SstParamParser.cpp +++ b/source/adios2/engine/sst/SstParamParser.cpp @@ -18,8 +18,7 @@ void SstParamParser::ParseParams(IO &io, struct _SstParams &Params) if (itKey != io.m_Parameters.end()) { std::string value = itKey->second; - std::transform(value.begin(), value.end(), value.begin(), - ::tolower); + std::transform(value.begin(), value.end(), value.begin(), ::tolower); if (value == "yes" || value == "true" || value == "on") { parameter = 1; @@ -30,9 +29,9 @@ void SstParamParser::ParseParams(IO &io, struct _SstParams &Params) } else { - helper::Throw( - "Engine", "SstParamParser", "ParseParams", - "Unknown Sst Boolean parameter \"" + value + "\""); + helper::Throw("Engine", "SstParamParser", "ParseParams", + "Unknown Sst Boolean parameter \"" + value + + "\""); } } }; @@ -56,14 +55,12 @@ void SstParamParser::ParseParams(IO &io, struct _SstParams &Params) return false; }; - auto lf_SetRegMethodParameter = [&](const std::string key, - size_t ¶meter) { + auto lf_SetRegMethodParameter = [&](const std::string key, size_t ¶meter) { auto itKey = io.m_Parameters.find(key); if (itKey != io.m_Parameters.end()) { std::string method = itKey->second; - std::transform(method.begin(), method.end(), method.begin(), - ::tolower); + std::transform(method.begin(), method.end(), method.begin(), ::tolower); if (method == "file") { parameter = SstRegisterFile; @@ -75,31 +72,27 @@ void SstParamParser::ParseParams(IO &io, struct _SstParams &Params) else if (method == "cloud") { parameter = SstRegisterCloud; - helper::Throw( - "Engine", "SstParamParser", "ParseParams", - "Sst RegistrationMethod " - "\"cloud\" not yet implemented"); + helper::Throw("Engine", "SstParamParser", "ParseParams", + "Sst RegistrationMethod " + "\"cloud\" not yet implemented"); } else { - helper::Throw( - "Engine", "SstParamParser", "ParseParams", - "Unknown Sst RegistrationMethod parameter \"" + method + - "\""); + helper::Throw("Engine", "SstParamParser", "ParseParams", + "Unknown Sst RegistrationMethod parameter \"" + + method + "\""); } return true; } return false; }; - auto lf_SetCompressionMethodParameter = [&](const std::string key, - size_t ¶meter) { + auto lf_SetCompressionMethodParameter = [&](const std::string key, size_t ¶meter) { auto itKey = io.m_Parameters.find(key); if (itKey != io.m_Parameters.end()) { std::string method = itKey->second; - std::transform(method.begin(), method.end(), method.begin(), - ::tolower); + std::transform(method.begin(), method.end(), method.begin(), ::tolower); if (method == "zfp") { parameter = SstCompressZFP; @@ -110,10 +103,9 @@ void SstParamParser::ParseParams(IO &io, struct _SstParams &Params) } else { - helper::Throw( - "Engine", "SstParamParser", "ParseParams", - "Unknown Sst CompressionMethod parameter \"" + method + - "\""); + helper::Throw("Engine", "SstParamParser", "ParseParams", + "Unknown Sst CompressionMethod parameter \"" + + method + "\""); } return true; } @@ -121,20 +113,17 @@ void SstParamParser::ParseParams(IO &io, struct _SstParams &Params) }; // not really a parameter, but a convenient way to pass this around - auto lf_SetIsRowMajorParameter = [&](const std::string key, - int ¶meter) { + auto lf_SetIsRowMajorParameter = [&](const std::string key, int ¶meter) { parameter = (io.m_ArrayOrder == adios2::ArrayOrdering::RowMajor); return true; }; - auto lf_SetMarshalMethodParameter = [&](const std::string key, - size_t ¶meter) { + auto lf_SetMarshalMethodParameter = [&](const std::string key, size_t ¶meter) { auto itKey = io.m_Parameters.find(key); if (itKey != io.m_Parameters.end()) { std::string method = itKey->second; - std::transform(method.begin(), method.end(), method.begin(), - ::tolower); + std::transform(method.begin(), method.end(), method.begin(), ::tolower); if (method == "ffs") { parameter = SstMarshalFFS; @@ -149,23 +138,21 @@ void SstParamParser::ParseParams(IO &io, struct _SstParams &Params) } else { - helper::Throw( - "Engine", "SstParamParser", "ParseParams", - "Unknown Sst MarshalMethod parameter \"" + method + "\""); + helper::Throw("Engine", "SstParamParser", "ParseParams", + "Unknown Sst MarshalMethod parameter \"" + + method + "\""); } return true; } return false; }; - auto lf_SetCPCommPatternParameter = [&](const std::string key, - size_t ¶meter) { + auto lf_SetCPCommPatternParameter = [&](const std::string key, size_t ¶meter) { auto itKey = io.m_Parameters.find(key); if (itKey != io.m_Parameters.end()) { std::string method = itKey->second; - std::transform(method.begin(), method.end(), method.begin(), - ::tolower); + std::transform(method.begin(), method.end(), method.begin(), ::tolower); if (method == "min") { parameter = SstCPCommMin; @@ -176,23 +163,21 @@ void SstParamParser::ParseParams(IO &io, struct _SstParams &Params) } else { - helper::Throw( - "Engine", "SstParamParser", "ParseParams", - "Unknown Sst CPCommPattern parameter \"" + method + "\""); + helper::Throw("Engine", "SstParamParser", "ParseParams", + "Unknown Sst CPCommPattern parameter \"" + + method + "\""); } return true; } return false; }; - auto lf_SetQueueFullPolicyParameter = [&](const std::string key, - size_t ¶meter) { + auto lf_SetQueueFullPolicyParameter = [&](const std::string key, size_t ¶meter) { auto itKey = io.m_Parameters.find(key); if (itKey != io.m_Parameters.end()) { std::string method = itKey->second; - std::transform(method.begin(), method.end(), method.begin(), - ::tolower); + std::transform(method.begin(), method.end(), method.begin(), ::tolower); if (method == "block") { parameter = SstQueueFullBlock; @@ -203,23 +188,21 @@ void SstParamParser::ParseParams(IO &io, struct _SstParams &Params) } else { - helper::Throw( - "Engine", "SstParamParser", "ParseParams", - "Unknown Sst QueueFullPolicy parameter \"" + method + "\""); + helper::Throw("Engine", "SstParamParser", "ParseParams", + "Unknown Sst QueueFullPolicy parameter \"" + + method + "\""); } return true; } return false; }; - auto lf_SetStepDistributionModeParameter = [&](const std::string key, - size_t ¶meter) { + auto lf_SetStepDistributionModeParameter = [&](const std::string key, size_t ¶meter) { auto itKey = io.m_Parameters.find(key); if (itKey != io.m_Parameters.end()) { std::string method = itKey->second; - std::transform(method.begin(), method.end(), method.begin(), - ::tolower); + std::transform(method.begin(), method.end(), method.begin(), ::tolower); if (method == "alltoall") { parameter = StepsAllToAll; @@ -236,21 +219,18 @@ void SstParamParser::ParseParams(IO &io, struct _SstParams &Params) { helper::Throw( "Engine", "SstParamParser", "ParseParams", - "Unknown Sst StepDistributionMode parameter \"" + method + - "\""); + "Unknown Sst StepDistributionMode parameter \"" + method + "\""); } return true; } return false; }; - auto lf_SetSpecPreloadModeParameter = [&](const std::string key, - int ¶meter) { + auto lf_SetSpecPreloadModeParameter = [&](const std::string key, int ¶meter) { auto itKey = io.m_Parameters.find(key); if (itKey != io.m_Parameters.end()) { std::string method = itKey->second; - std::transform(method.begin(), method.end(), method.begin(), - ::tolower); + std::transform(method.begin(), method.end(), method.begin(), ::tolower); if (method == "off") { parameter = SpecPreloadOff; @@ -267,16 +247,15 @@ void SstParamParser::ParseParams(IO &io, struct _SstParams &Params) { helper::Throw( "Engine", "SstParamParser", "ParseParams", - "Unknown Sst SpeculativePreloadMode parameter \"" + method + - "\""); + "Unknown Sst SpeculativePreloadMode parameter \"" + method + "\""); } return true; } return false; }; -#define get_params(Param, Type, Typedecl, Default) \ - Params.Param = Default; \ +#define get_params(Param, Type, Typedecl, Default) \ + Params.Param = Default; \ lf_Set##Type##Parameter(#Param, Params.Param); SST_FOREACH_PARAMETER_TYPE_4ARGS(get_params); #undef get_params diff --git a/source/adios2/engine/sst/SstReader.cpp b/source/adios2/engine/sst/SstReader.cpp index 7628fd2b2f..2754e75f6e 100644 --- a/source/adios2/engine/sst/SstReader.cpp +++ b/source/adios2/engine/sst/SstReader.cpp @@ -26,8 +26,7 @@ namespace core namespace engine { -SstReader::SstReader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +SstReader::SstReader(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("SstReader", io, name, mode, std::move(comm)) { char *cstr = new char[name.length() + 1]; @@ -39,37 +38,33 @@ SstReader::SstReader(IO &io, const std::string &name, const Mode mode, if (!m_Input) { delete[] cstr; - helper::Throw( - "Engine", "SstReader", "SstReader", - "SstReader did not find active " - "Writer contact info in file \"" + - m_Name + SST_POSTFIX + - "\". Timeout or non-current SST contact file?"); + helper::Throw("Engine", "SstReader", "SstReader", + "SstReader did not find active " + "Writer contact info in file \"" + + m_Name + SST_POSTFIX + + "\". Timeout or non-current SST contact file?"); } // Maybe need other writer-side params in the future, but for now only // marshal method, and if the writer is row major. SstReaderGetParams(m_Input, &m_WriterMarshalMethod, &m_WriterIsRowMajor); - auto varFFSCallback = [](void *reader, const char *variableName, - const int type, void *data) { + auto varFFSCallback = [](void *reader, const char *variableName, const int type, void *data) { adios2::DataType Type = (adios2::DataType)type; - class SstReader::SstReader *Reader = - reinterpret_cast(reader); + class SstReader::SstReader *Reader = reinterpret_cast(reader); if (Type == adios2::DataType::Struct) { return (void *)NULL; } -#define declare_type(T) \ - else if (Type == helper::GetDataType()) \ - { \ - Variable *variable = \ - &(Reader->m_IO.DefineVariable(variableName)); \ - variable->SetData((T *)data); \ - variable->m_AvailableStepsCount = 1; \ - Reader->RegisterCreatedVariable(variable); \ - return (void *)variable; \ +#define declare_type(T) \ + else if (Type == helper::GetDataType()) \ + { \ + Variable *variable = &(Reader->m_IO.DefineVariable(variableName)); \ + variable->SetData((T *)data); \ + variable->m_AvailableStepsCount = 1; \ + Reader->RegisterCreatedVariable(variable); \ + return (void *)variable; \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) @@ -78,10 +73,8 @@ SstReader::SstReader(IO &io, const std::string &name, const Mode mode, return (void *)NULL; }; - auto attrFFSCallback = [](void *reader, const char *attrName, - const int type, void *data) { - class SstReader::SstReader *Reader = - reinterpret_cast(reader); + auto attrFFSCallback = [](void *reader, const char *attrName, const int type, void *data) { + class SstReader::SstReader *Reader = reinterpret_cast(reader); adios2::DataType Type = (adios2::DataType)type; if (attrName == NULL) { @@ -97,21 +90,19 @@ SstReader::SstReader(IO &io, const std::string &name, const Mode mode, } else if (Type == helper::GetDataType()) { - Reader->m_IO.DefineAttribute( - attrName, *(char **)data, "", "/", true); + Reader->m_IO.DefineAttribute(attrName, *(char **)data, "", "/", true); } -#define declare_type(T) \ - else if (Type == helper::GetDataType()) \ - { \ - Reader->m_IO.DefineAttribute(attrName, *(T *)data, "", "/", true); \ +#define declare_type(T) \ + else if (Type == helper::GetDataType()) \ + { \ + Reader->m_IO.DefineAttribute(attrName, *(T *)data, "", "/", true); \ } ADIOS2_FOREACH_ATTRIBUTE_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type else { - std::cout << "Loading attribute matched no type " - << ToString(Type) << std::endl; + std::cout << "Loading attribute matched no type " << ToString(Type) << std::endl; } } catch (...) @@ -122,15 +113,13 @@ SstReader::SstReader(IO &io, const std::string &name, const Mode mode, return; }; - auto arrayFFSCallback = [](void *reader, const char *variableName, - const int type, int DimCount, size_t *Shape, - size_t *Start, size_t *Count) { + auto arrayFFSCallback = [](void *reader, const char *variableName, const int type, int DimCount, + size_t *Shape, size_t *Start, size_t *Count) { std::vector VecShape; std::vector VecStart; std::vector VecCount; adios2::DataType Type = (adios2::DataType)type; - class SstReader::SstReader *Reader = - reinterpret_cast(reader); + class SstReader::SstReader *Reader = reinterpret_cast(reader); /* * setup shape of array variable as global (I.E. Count == Shape, * Start == 0) @@ -158,96 +147,94 @@ SstReader::SstReader(IO &io, const std::string &name, const Mode mode, { return (void *)NULL; } -#define declare_type(T) \ - else if (Type == helper::GetDataType()) \ - { \ - Variable *variable = &(Reader->m_IO.DefineVariable( \ - variableName, VecShape, VecStart, VecCount)); \ - variable->m_AvailableStepsCount = 1; \ - Reader->RegisterCreatedVariable(variable); \ - return (void *)variable; \ +#define declare_type(T) \ + else if (Type == helper::GetDataType()) \ + { \ + Variable *variable = \ + &(Reader->m_IO.DefineVariable(variableName, VecShape, VecStart, VecCount)); \ + variable->m_AvailableStepsCount = 1; \ + Reader->RegisterCreatedVariable(variable); \ + return (void *)variable; \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type return (void *)NULL; }; - auto arrayBlocksInfoCallback = - [](void *reader, void *variable, const int type, int WriterRank, - int DimCount, size_t *Shape, size_t *Start, size_t *Count) { - std::vector VecShape; - std::vector VecStart; - std::vector VecCount; - adios2::DataType Type = (adios2::DataType)type; - class SstReader::SstReader *Reader = - reinterpret_cast(reader); - size_t currentStep = SstCurrentStep(Reader->m_Input); - - /* - * setup shape of array variable as global (I.E. Count == Shape, - * Start == 0) - */ - if (Shape) + auto arrayBlocksInfoCallback = [](void *reader, void *variable, const int type, int WriterRank, + int DimCount, size_t *Shape, size_t *Start, size_t *Count) { + std::vector VecShape; + std::vector VecStart; + std::vector VecCount; + adios2::DataType Type = (adios2::DataType)type; + class SstReader::SstReader *Reader = reinterpret_cast(reader); + size_t currentStep = SstCurrentStep(Reader->m_Input); + + /* + * setup shape of array variable as global (I.E. Count == Shape, + * Start == 0) + */ + if (Shape) + { + for (int i = 0; i < DimCount; i++) { - for (int i = 0; i < DimCount; i++) - { - VecShape.push_back(Shape[i]); - VecStart.push_back(Start[i]); - VecCount.push_back(Count[i]); - } + VecShape.push_back(Shape[i]); + VecStart.push_back(Start[i]); + VecCount.push_back(Count[i]); } - else + } + else + { + VecShape = {}; + VecStart = {}; + for (int i = 0; i < DimCount; i++) { - VecShape = {}; - VecStart = {}; - for (int i = 0; i < DimCount; i++) - { - VecCount.push_back(Count[i]); - } + VecCount.push_back(Count[i]); } + } - if (Type == adios2::DataType::Struct) - { - return; - } -#define declare_type(T) \ - else if (Type == helper::GetDataType()) \ - { \ - Variable *Var = reinterpret_cast *>(variable); \ - auto savedShape = Var->m_Shape; \ - auto savedCount = Var->m_Count; \ - auto savedStart = Var->m_Start; \ - Var->m_Shape = VecShape; \ - Var->m_Count = VecCount; \ - Var->m_Start = VecStart; \ - Var->SetBlockInfo((T *)NULL, currentStep); \ - Var->m_Shape = savedShape; \ - Var->m_Count = savedCount; \ - Var->m_Start = savedStart; \ + if (Type == adios2::DataType::Struct) + { + return; + } +#define declare_type(T) \ + else if (Type == helper::GetDataType()) \ + { \ + Variable *Var = reinterpret_cast *>(variable); \ + auto savedShape = Var->m_Shape; \ + auto savedCount = Var->m_Count; \ + auto savedStart = Var->m_Start; \ + Var->m_Shape = VecShape; \ + Var->m_Count = VecCount; \ + Var->m_Start = VecStart; \ + Var->SetBlockInfo((T *)NULL, currentStep); \ + Var->m_Shape = savedShape; \ + Var->m_Count = savedCount; \ + Var->m_Start = savedStart; \ } - ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) + ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type - return; - }; + return; + }; auto MinArraySetupUpcall = [](void *reader, int DimCount, size_t *Shape) { MinVarInfo *MV = new MinVarInfo(DimCount, Shape); return (void *)MV; }; - auto arrayMinBlocksInfoCallback = - [](void *reader, void *MV, const int type, int WriterRank, int DimCount, - size_t *Shape, size_t *Start, size_t *Count) { - MinBlockInfo MBI; - MinVarInfo *MinVar = (MinVarInfo *)MV; - - MBI.WriterID = WriterRank; - MBI.BlockID = 0; - MBI.Start = Start; - MBI.Count = Count; - - MinVar->BlocksInfo.push_back(MBI); - return; - }; + auto arrayMinBlocksInfoCallback = [](void *reader, void *MV, const int type, int WriterRank, + int DimCount, size_t *Shape, size_t *Start, + size_t *Count) { + MinBlockInfo MBI; + MinVarInfo *MinVar = (MinVarInfo *)MV; + + MBI.WriterID = WriterRank; + MBI.BlockID = 0; + MBI.Start = Start; + MBI.Count = Count; + + MinVar->BlocksInfo.push_back(MBI); + return; + }; static int UseMin = 1; if (UseMin == -1) @@ -262,13 +249,11 @@ SstReader::SstReader(IO &io, const std::string &name, const Mode mode, } } if (UseMin) - SstReaderInitFFSCallback(m_Input, this, varFFSCallback, - arrayFFSCallback, MinArraySetupUpcall, - attrFFSCallback, arrayMinBlocksInfoCallback); + SstReaderInitFFSCallback(m_Input, this, varFFSCallback, arrayFFSCallback, + MinArraySetupUpcall, attrFFSCallback, arrayMinBlocksInfoCallback); else - SstReaderInitFFSCallback(m_Input, this, varFFSCallback, - arrayFFSCallback, NULL, attrFFSCallback, - arrayBlocksInfoCallback); + SstReaderInitFFSCallback(m_Input, this, varFFSCallback, arrayFFSCallback, NULL, + attrFFSCallback, arrayBlocksInfoCallback); delete[] cstr; m_IsOpen = true; @@ -294,8 +279,8 @@ void SstReader::DestructorClose(bool Verbose) noexcept { if (Verbose) { - std::cerr << "SST Reader \"" << m_Name - << "\" Destroyed without a prior Close()." << std::endl; + std::cerr << "SST Reader \"" << m_Name << "\" Destroyed without a prior Close()." + << std::endl; std::cerr << "This may result in \"unexpected close\" or \"failed to " "send\" warning from a connected SST Writer." << std::endl; @@ -348,12 +333,10 @@ StepStatus SstReader::BeginStep(StepMode Mode, const float timeout_sec) m_CurrentStepMetaData = SstGetCurMetadata(m_Input); if (!m_BP5Deserializer) { - m_BP5Deserializer = new format::BP5Deserializer(m_WriterIsRowMajor, - Params.IsRowMajor); + m_BP5Deserializer = new format::BP5Deserializer(m_WriterIsRowMajor, Params.IsRowMajor); m_BP5Deserializer->m_Engine = this; } - SstMetaMetaList MMList = - SstGetNewMetaMetaData(m_Input, SstCurrentStep(m_Input)); + SstMetaMetaList MMList = SstGetNewMetaMetaData(m_Input, SstCurrentStep(m_Input)); // m_BP5Deserializer->StepInit(m_IO.m_Parameters, // "in call to BP5::BeginStep", "bp5"); int i = 0; @@ -369,22 +352,19 @@ StepStatus SstReader::BeginStep(StepMode Mode, const float timeout_sec) } free(MMList); - SstBlock AttributeBlockList = - SstGetAttributeData(m_Input, SstCurrentStep(m_Input)); + SstBlock AttributeBlockList = SstGetAttributeData(m_Input, SstCurrentStep(m_Input)); i = 0; while (AttributeBlockList && AttributeBlockList[i].BlockData) { m_IO.RemoveAllAttributes(); - m_BP5Deserializer->InstallAttributeData( - AttributeBlockList[i].BlockData, - AttributeBlockList[i].BlockSize); + m_BP5Deserializer->InstallAttributeData(AttributeBlockList[i].BlockData, + AttributeBlockList[i].BlockSize); i++; } RemoveCreatedVars(); m_BP5Deserializer->SetupForStep( - SstCurrentStep(m_Input), - static_cast(m_CurrentStepMetaData->WriterCohortSize)); + SstCurrentStep(m_Input), static_cast(m_CurrentStepMetaData->WriterCohortSize)); for (int i = 0; i < m_CurrentStepMetaData->WriterCohortSize; i++) { @@ -392,13 +372,11 @@ StepStatus SstReader::BeginStep(StepMode Mode, const float timeout_sec) m_BP5Deserializer->InstallMetaData(tmp->block, tmp->DataSize, i); } - m_IO.ResetVariablesStepSelection(true, - "in call to SST Reader BeginStep"); + m_IO.ResetVariablesStepSelection(true, "in call to SST Reader BeginStep"); } else if (m_WriterMarshalMethod == SstMarshalBP) { - PERFSTUBS_SCOPED_TIMER( - "BP Marshaling Case - deserialize and install metadata"); + PERFSTUBS_SCOPED_TIMER("BP Marshaling Case - deserialize and install metadata"); m_CurrentStepMetaData = SstGetCurMetadata(m_Input); // At begin step, you get metadata from the writers. You need to // use this for two things: First, you need to create the @@ -435,12 +413,10 @@ StepStatus SstReader::BeginStep(StepMode Mode, const float timeout_sec) // (and to the control plane).) m_BP3Deserializer = new format::BP3Deserializer(m_Comm); - m_BP3Deserializer->Init(m_IO.m_Parameters, - "in call to BP3::Open for reading", "sst"); + m_BP3Deserializer->Init(m_IO.m_Parameters, "in call to BP3::Open for reading", "sst"); - m_BP3Deserializer->m_Metadata.Resize( - (*m_CurrentStepMetaData->WriterMetadata)->DataSize, - "in SST Streaming Listener"); + m_BP3Deserializer->m_Metadata.Resize((*m_CurrentStepMetaData->WriterMetadata)->DataSize, + "in SST Streaming Listener"); std::memcpy(m_BP3Deserializer->m_Metadata.m_Buffer.data(), (*m_CurrentStepMetaData->WriterMetadata)->block, @@ -448,8 +424,7 @@ StepStatus SstReader::BeginStep(StepMode Mode, const float timeout_sec) RemoveCreatedVars(); m_BP3Deserializer->ParseMetadata(m_BP3Deserializer->m_Metadata, *this); - m_IO.ResetVariablesStepSelection(true, - "in call to SST Reader BeginStep"); + m_IO.ResetVariablesStepSelection(true, "in call to SST Reader BeginStep"); } else if (m_WriterMarshalMethod == SstMarshalFFS) { @@ -472,9 +447,8 @@ void SstReader::EndStep() { if (!m_BetweenStepPairs) { - helper::Throw( - "Engine", "SstReader", "EndStep", - "EndStep() is called without a successful BeginStep()"); + helper::Throw("Engine", "SstReader", "EndStep", + "EndStep() is called without a successful BeginStep()"); } m_BetweenStepPairs = false; PERFSTUBS_SCOPED_TIMER_FUNC(); @@ -491,9 +465,8 @@ void SstReader::EndStep() if (Result != SstSuccess) { // tentative, until we change EndStep so that it has a return value - helper::Throw( - "Engine", "SstReader", "EndStep", - "Writer failed before returning data"); + helper::Throw("Engine", "SstReader", "EndStep", + "Writer failed before returning data"); } } else if (m_WriterMarshalMethod == SstMarshalBP) @@ -539,126 +512,115 @@ void SstReader::Init() Parser.ParseParams(m_IO, Params); } -#define declare_gets(T) \ - void SstReader::DoGetSync(Variable &variable, T *data) \ - { \ - if (m_BetweenStepPairs == false) \ - { \ - helper::Throw( \ - "Engine", "SstReader", "DoGetSync", \ - "When using the SST engine in ADIOS2, " \ - "Get() calls must appear between " \ - "BeginStep/EndStep pairs"); \ - } \ - \ - if (m_WriterMarshalMethod == SstMarshalFFS) \ - { \ - size_t *Start = NULL; \ - size_t *Count = NULL; \ - size_t DimCount = 0; \ - int NeedSync = 0; \ - \ - if (variable.m_SelectionType == \ - adios2::SelectionType::BoundingBox) \ - { \ - DimCount = variable.m_Shape.size(); \ - Start = variable.m_Start.data(); \ - Count = variable.m_Count.data(); \ - NeedSync = SstFFSGetDeferred(m_Input, (void *)&variable, \ - variable.m_Name.c_str(), \ - DimCount, Start, Count, data); \ - } \ - else if (variable.m_SelectionType == \ - adios2::SelectionType::WriteBlock) \ - { \ - DimCount = variable.m_Count.size(); \ - Count = variable.m_Count.data(); \ - NeedSync = SstFFSGetLocalDeferred( \ - m_Input, (void *)&variable, variable.m_Name.c_str(), \ - DimCount, variable.m_BlockID, Count, data); \ - } \ - if (NeedSync) \ - { \ - SstFFSPerformGets(m_Input); \ - } \ - } \ - if ((m_WriterMarshalMethod == SstMarshalBP) || \ - (m_WriterMarshalMethod == SstMarshalBP5)) \ - { \ - /* DoGetSync() is going to have terrible performance 'cause */ \ - /* it's a bad idea in an SST-like environment. But do */ \ - /* whatever you do forDoGetDeferred() and then PerformGets() */ \ - DoGetDeferred(variable, data); \ - if (!variable.m_SingleValue) \ - { \ - /* Don't need to do gets if this was a SingleValue (in \ - * metadata) */ \ - PerformGets(); \ - } \ - } \ - } \ - \ - void SstReader::DoGetDeferred(Variable &variable, T *data) \ - { \ - if (m_BetweenStepPairs == false) \ - { \ - helper::Throw( \ - "Engine", "SstReader", "DoGetDeferred", \ - "When using the SST engine in ADIOS2, " \ - "Get() calls must appear between " \ - "BeginStep/EndStep pairs"); \ - } \ - \ - if (m_WriterMarshalMethod == SstMarshalFFS) \ - { \ - size_t *Start = NULL; \ - size_t *Count = NULL; \ - size_t DimCount = 0; \ - \ - if (variable.m_SelectionType == \ - adios2::SelectionType::BoundingBox) \ - { \ - DimCount = variable.m_Shape.size(); \ - Start = variable.m_Start.data(); \ - Count = variable.m_Count.data(); \ - SstFFSGetDeferred(m_Input, (void *)&variable, \ - variable.m_Name.c_str(), DimCount, Start, \ - Count, data); \ - } \ - else if (variable.m_SelectionType == \ - adios2::SelectionType::WriteBlock) \ - { \ - DimCount = variable.m_Count.size(); \ - Count = variable.m_Count.data(); \ - SstFFSGetLocalDeferred(m_Input, (void *)&variable, \ - variable.m_Name.c_str(), DimCount, \ - variable.m_BlockID, Count, data); \ - } \ - } \ - if (m_WriterMarshalMethod == SstMarshalBP) \ - { \ - /* Look at the data requested and examine the metadata to see */ \ - /* what writer has what you need. Build up a set of read */ \ - /* requests (maybe just get all the data from every writer */ \ - /* that has *something* you need). You'll use this in EndStep,*/ \ - /* when you have to get all the array data and put it where */ \ - /* it's supposed to go. */ \ - /* m_BP3Deserializer->GetDeferredVariable(variable, data); */ \ - if (variable.m_SingleValue) \ - { \ - *data = variable.m_Value; \ - } \ - else \ - { \ - m_BP3Deserializer->InitVariableBlockInfo(variable, data); \ - m_BP3Deserializer->m_DeferredVariables.insert( \ - variable.m_Name); \ - } \ - } \ - if (m_WriterMarshalMethod == SstMarshalBP5) \ - { \ - m_BP5Deserializer->QueueGet(variable, data); \ - } \ +#define declare_gets(T) \ + void SstReader::DoGetSync(Variable &variable, T *data) \ + { \ + if (m_BetweenStepPairs == false) \ + { \ + helper::Throw("Engine", "SstReader", "DoGetSync", \ + "When using the SST engine in ADIOS2, " \ + "Get() calls must appear between " \ + "BeginStep/EndStep pairs"); \ + } \ + \ + if (m_WriterMarshalMethod == SstMarshalFFS) \ + { \ + size_t *Start = NULL; \ + size_t *Count = NULL; \ + size_t DimCount = 0; \ + int NeedSync = 0; \ + \ + if (variable.m_SelectionType == adios2::SelectionType::BoundingBox) \ + { \ + DimCount = variable.m_Shape.size(); \ + Start = variable.m_Start.data(); \ + Count = variable.m_Count.data(); \ + NeedSync = SstFFSGetDeferred(m_Input, (void *)&variable, variable.m_Name.c_str(), \ + DimCount, Start, Count, data); \ + } \ + else if (variable.m_SelectionType == adios2::SelectionType::WriteBlock) \ + { \ + DimCount = variable.m_Count.size(); \ + Count = variable.m_Count.data(); \ + NeedSync = \ + SstFFSGetLocalDeferred(m_Input, (void *)&variable, variable.m_Name.c_str(), \ + DimCount, variable.m_BlockID, Count, data); \ + } \ + if (NeedSync) \ + { \ + SstFFSPerformGets(m_Input); \ + } \ + } \ + if ((m_WriterMarshalMethod == SstMarshalBP) || (m_WriterMarshalMethod == SstMarshalBP5)) \ + { \ + /* DoGetSync() is going to have terrible performance 'cause */ \ + /* it's a bad idea in an SST-like environment. But do */ \ + /* whatever you do forDoGetDeferred() and then PerformGets() */ \ + DoGetDeferred(variable, data); \ + if (!variable.m_SingleValue) \ + { \ + /* Don't need to do gets if this was a SingleValue (in \ + * metadata) */ \ + PerformGets(); \ + } \ + } \ + } \ + \ + void SstReader::DoGetDeferred(Variable &variable, T *data) \ + { \ + if (m_BetweenStepPairs == false) \ + { \ + helper::Throw("Engine", "SstReader", "DoGetDeferred", \ + "When using the SST engine in ADIOS2, " \ + "Get() calls must appear between " \ + "BeginStep/EndStep pairs"); \ + } \ + \ + if (m_WriterMarshalMethod == SstMarshalFFS) \ + { \ + size_t *Start = NULL; \ + size_t *Count = NULL; \ + size_t DimCount = 0; \ + \ + if (variable.m_SelectionType == adios2::SelectionType::BoundingBox) \ + { \ + DimCount = variable.m_Shape.size(); \ + Start = variable.m_Start.data(); \ + Count = variable.m_Count.data(); \ + SstFFSGetDeferred(m_Input, (void *)&variable, variable.m_Name.c_str(), DimCount, \ + Start, Count, data); \ + } \ + else if (variable.m_SelectionType == adios2::SelectionType::WriteBlock) \ + { \ + DimCount = variable.m_Count.size(); \ + Count = variable.m_Count.data(); \ + SstFFSGetLocalDeferred(m_Input, (void *)&variable, variable.m_Name.c_str(), \ + DimCount, variable.m_BlockID, Count, data); \ + } \ + } \ + if (m_WriterMarshalMethod == SstMarshalBP) \ + { \ + /* Look at the data requested and examine the metadata to see */ \ + /* what writer has what you need. Build up a set of read */ \ + /* requests (maybe just get all the data from every writer */ \ + /* that has *something* you need). You'll use this in EndStep,*/ \ + /* when you have to get all the array data and put it where */ \ + /* it's supposed to go. */ \ + /* m_BP3Deserializer->GetDeferredVariable(variable, data); */ \ + if (variable.m_SingleValue) \ + { \ + *data = variable.m_Value; \ + } \ + else \ + { \ + m_BP3Deserializer->InitVariableBlockInfo(variable, data); \ + m_BP3Deserializer->m_DeferredVariables.insert(variable.m_Name); \ + } \ + } \ + if (m_WriterMarshalMethod == SstMarshalBP5) \ + { \ + m_BP5Deserializer->QueueGet(variable, data); \ + } \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_gets) #undef declare_gets @@ -691,8 +653,7 @@ void SstReader::DoGetStructDeferred(VariableStruct &variable, void *data) m_BP5Deserializer->QueueGet(variable, data); } -bool SstReader::VarShape(const VariableBase &Var, const size_t Step, - Dims &Shape) const +bool SstReader::VarShape(const VariableBase &Var, const size_t Step, Dims &Shape) const { if (m_WriterMarshalMethod != SstMarshalBP5) return false; @@ -700,8 +661,7 @@ bool SstReader::VarShape(const VariableBase &Var, const size_t Step, return m_BP5Deserializer->VarShape(Var, Step, Shape); } -bool SstReader::VariableMinMax(const VariableBase &Var, const size_t Step, - MinMaxStruct &MinMax) +bool SstReader::VariableMinMax(const VariableBase &Var, const size_t Step, MinMaxStruct &MinMax) { if (m_WriterMarshalMethod != SstMarshalBP5) return false; @@ -712,8 +672,7 @@ bool SstReader::VariableMinMax(const VariableBase &Var, const size_t Step, void SstReader::BP5PerformGets() { size_t maxReadSize; - auto ReadRequests = - m_BP5Deserializer->GenerateReadRequests(true, &maxReadSize); + auto ReadRequests = m_BP5Deserializer->GenerateReadRequests(true, &maxReadSize); std::vector sstReadHandlers; for (const auto &Req : ReadRequests) { @@ -722,18 +681,16 @@ void SstReader::BP5PerformGets() { dp_info = m_CurrentStepMetaData->DP_TimestepInfo[Req.WriterRank]; } - auto ret = SstReadRemoteMemory(m_Input, Req.WriterRank, Req.Timestep, - Req.StartOffset, Req.ReadLength, - Req.DestinationAddr, dp_info); + auto ret = SstReadRemoteMemory(m_Input, Req.WriterRank, Req.Timestep, Req.StartOffset, + Req.ReadLength, Req.DestinationAddr, dp_info); sstReadHandlers.push_back(ret); } for (const auto &i : sstReadHandlers) { if (SstWaitForCompletion(m_Input, i) != SstSuccess) { - helper::Throw( - "Engine", "SstReader", "BP5PerformGets", - "Writer failed before returning data"); + helper::Throw("Engine", "SstReader", "BP5PerformGets", + "Writer failed before returning data"); } } @@ -768,16 +725,15 @@ void SstReader::PerformGets() if (type == DataType::Struct) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - Variable &variable = \ - FindVariable(name, "in call to PerformGets, EndStep or Close"); \ - for (auto &blockInfo : variable.m_BlocksInfo) \ - { \ - m_BP3Deserializer->SetVariableBlockInfo(variable, blockInfo); \ - } \ - ReadVariableBlocksRequests(variable, sstReadHandlers, buffers); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + Variable &variable = FindVariable(name, "in call to PerformGets, EndStep or Close"); \ + for (auto &blockInfo : variable.m_BlocksInfo) \ + { \ + m_BP3Deserializer->SetVariableBlockInfo(variable, blockInfo); \ + } \ + ReadVariableBlocksRequests(variable, sstReadHandlers, buffers); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -787,9 +743,8 @@ void SstReader::PerformGets() { if (SstWaitForCompletion(m_Input, i) != SstSuccess) { - helper::Throw( - "Engine", "SstReader", "PerformGets", - "Writer failed before returning data"); + helper::Throw("Engine", "SstReader", "PerformGets", + "Writer failed before returning data"); } } @@ -800,13 +755,12 @@ void SstReader::PerformGets() if (type == DataType::Struct) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - Variable &variable = \ - FindVariable(name, "in call to PerformGets, EndStep or Close"); \ - ReadVariableBlocksFill(variable, buffers, iter); \ - variable.m_BlocksInfo.clear(); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + Variable &variable = FindVariable(name, "in call to PerformGets, EndStep or Close"); \ + ReadVariableBlocksFill(variable, buffers, iter); \ + variable.m_BlocksInfo.clear(); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -822,8 +776,7 @@ void SstReader::PerformGets() void SstReader::DoClose(const int transportIndex) { SstReaderClose(m_Input); } -MinVarInfo *SstReader::MinBlocksInfo(const VariableBase &Var, - const size_t Step) const +MinVarInfo *SstReader::MinBlocksInfo(const VariableBase &Var, const size_t Step) const { if (m_WriterMarshalMethod == SstMarshalBP) { @@ -837,53 +790,49 @@ MinVarInfo *SstReader::MinBlocksInfo(const VariableBase &Var, { return (MinVarInfo *)m_BP5Deserializer->MinBlocksInfo(Var, Step); } - helper::Throw( - "Engine", "SstReader", "MinBlocksInfo", - "Unknown marshal mechanism in MinBlocksInfo"); + helper::Throw("Engine", "SstReader", "MinBlocksInfo", + "Unknown marshal mechanism in MinBlocksInfo"); return nullptr; } -#define declare_type(T) \ - std::map::BPInfo>> \ - SstReader::DoAllStepsBlocksInfo(const Variable &variable) const \ - { \ - if (m_WriterMarshalMethod == SstMarshalFFS) \ - { \ - helper::Throw( \ - "Engine", "SstReader", "DoAllStepsBlocksInfo", \ - "SST Engine doesn't implement " \ - "function DoAllStepsBlocksInfo"); \ - } \ - else if (m_WriterMarshalMethod == SstMarshalBP) \ - { \ - return m_BP3Deserializer->AllStepsBlocksInfo(variable); \ - } \ - helper::Throw( \ - "Engine", "SstReader", "DoAllStepsBlocksInfo", \ - "Unknown marshal mechanism in DoAllStepsBlocksInfo"); \ - return std::map::BPInfo>>(); \ - } \ - \ - std::vector::BPInfo> SstReader::DoBlocksInfo( \ - const Variable &variable, const size_t step) const \ - { \ - if (m_WriterMarshalMethod == SstMarshalFFS) \ - { \ - return variable.m_BlocksInfo; \ - } \ - else if (m_WriterMarshalMethod == SstMarshalBP) \ - { \ - return m_BP3Deserializer->BlocksInfo(variable, 0); \ - } \ - else if (m_WriterMarshalMethod == SstMarshalBP5) \ - { \ - std::vector::BPInfo> tmp; \ - return tmp; \ - } \ - helper::Throw( \ - "Engine", "SstReader", "DoBlocksInfo", \ - "Unknown marshal mechanism in DoBlocksInfo"); \ - return std::vector::BPInfo>(); \ +#define declare_type(T) \ + std::map::BPInfo>> SstReader::DoAllStepsBlocksInfo( \ + const Variable &variable) const \ + { \ + if (m_WriterMarshalMethod == SstMarshalFFS) \ + { \ + helper::Throw("Engine", "SstReader", "DoAllStepsBlocksInfo", \ + "SST Engine doesn't implement " \ + "function DoAllStepsBlocksInfo"); \ + } \ + else if (m_WriterMarshalMethod == SstMarshalBP) \ + { \ + return m_BP3Deserializer->AllStepsBlocksInfo(variable); \ + } \ + helper::Throw("Engine", "SstReader", "DoAllStepsBlocksInfo", \ + "Unknown marshal mechanism in DoAllStepsBlocksInfo"); \ + return std::map::BPInfo>>(); \ + } \ + \ + std::vector::BPInfo> SstReader::DoBlocksInfo(const Variable &variable, \ + const size_t step) const \ + { \ + if (m_WriterMarshalMethod == SstMarshalFFS) \ + { \ + return variable.m_BlocksInfo; \ + } \ + else if (m_WriterMarshalMethod == SstMarshalBP) \ + { \ + return m_BP3Deserializer->BlocksInfo(variable, 0); \ + } \ + else if (m_WriterMarshalMethod == SstMarshalBP5) \ + { \ + std::vector::BPInfo> tmp; \ + return tmp; \ + } \ + helper::Throw("Engine", "SstReader", "DoBlocksInfo", \ + "Unknown marshal mechanism in DoBlocksInfo"); \ + return std::vector::BPInfo>(); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) diff --git a/source/adios2/engine/sst/SstReader.h b/source/adios2/engine/sst/SstReader.h index e612a12c6f..fa0aeca8b2 100644 --- a/source/adios2/engine/sst/SstReader.h +++ b/source/adios2/engine/sst/SstReader.h @@ -39,8 +39,7 @@ class SstReader : public Engine * @param method * @param nthreads */ - SstReader(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + SstReader(IO &io, const std::string &name, const Mode mode, helper::Comm comm); virtual ~SstReader(); @@ -51,20 +50,16 @@ class SstReader : public Engine void PerformGets(); void Flush(const int transportIndex = -1) final; MinVarInfo *MinBlocksInfo(const VariableBase &, const size_t Step) const; - bool VarShape(const VariableBase &Var, const size_t Step, - Dims &Shape) const; - bool VariableMinMax(const VariableBase &, const size_t Step, - MinMaxStruct &MinMax); + bool VarShape(const VariableBase &Var, const size_t Step, Dims &Shape) const; + bool VariableMinMax(const VariableBase &, const size_t Step, MinMaxStruct &MinMax); private: template - void ReadVariableBlocksRequests(Variable &variable, - std::vector &sstReadHandlers, + void ReadVariableBlocksRequests(Variable &variable, std::vector &sstReadHandlers, std::vector> &buffers); template - void ReadVariableBlocksFill(Variable &variable, - std::vector> &buffers, + void ReadVariableBlocksFill(Variable &variable, std::vector> &buffers, size_t &iter); template @@ -84,17 +79,16 @@ class SstReader : public Engine struct _SstParams Params; - std::unordered_map> - m_InfoMap; -#define declare_type(T) \ - void DoGetSync(Variable &, T *) final; \ - void DoGetDeferred(Variable &, T *) final; \ - \ - std::map::BPInfo>> \ - DoAllStepsBlocksInfo(const Variable &variable) const final; \ - \ - std::vector::BPInfo> DoBlocksInfo( \ - const Variable &variable, const size_t step) const final; + std::unordered_map> m_InfoMap; +#define declare_type(T) \ + void DoGetSync(Variable &, T *) final; \ + void DoGetDeferred(Variable &, T *) final; \ + \ + std::map::BPInfo>> DoAllStepsBlocksInfo( \ + const Variable &variable) const final; \ + \ + std::vector::BPInfo> DoBlocksInfo(const Variable &variable, \ + const size_t step) const final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/sst/SstReader.tcc b/source/adios2/engine/sst/SstReader.tcc index 7f0bde51b8..05b4334fcd 100644 --- a/source/adios2/engine/sst/SstReader.tcc +++ b/source/adios2/engine/sst/SstReader.tcc @@ -24,15 +24,15 @@ namespace engine { template -void SstReader::ReadVariableBlocksRequests( - Variable &variable, std::vector &sstReadHandlers, - std::vector> &buffers) +void SstReader::ReadVariableBlocksRequests(Variable &variable, + std::vector &sstReadHandlers, + std::vector> &buffers) { PERFSTUBS_SCOPED_TIMER_FUNC(); #ifdef ADIOS2_HAVE_ENDIAN_REVERSE - const bool endianReverse = helper::IsLittleEndian() != - m_BP3Deserializer->m_Minifooter.IsLittleEndian; + const bool endianReverse = + helper::IsLittleEndian() != m_BP3Deserializer->m_Minifooter.IsLittleEndian; #else constexpr bool endianReverse = false; #endif @@ -43,8 +43,7 @@ void SstReader::ReadVariableBlocksRequests( T *originalBlockData = blockInfo.Data; for (const auto &stepPair : blockInfo.StepBlockSubStreamsInfo) { - const std::vector &subStreamsInfo = - stepPair.second; + const std::vector &subStreamsInfo = stepPair.second; for (const helper::SubStreamBoxInfo &subStreamInfo : subStreamsInfo) { const size_t rank = subStreamInfo.SubStreamID; @@ -60,16 +59,14 @@ void SstReader::ReadVariableBlocksRequests( char *buffer = nullptr; size_t payloadSize = 0, payloadStart = 0; - m_BP3Deserializer->PreDataRead( - variable, blockInfo, subStreamInfo, buffer, payloadSize, - payloadStart, threadID); + m_BP3Deserializer->PreDataRead(variable, blockInfo, subStreamInfo, buffer, + payloadSize, payloadStart, threadID); std::stringstream ss; ss << "SST Bytes Read from remote rank " << rank; PERFSTUBS_SAMPLE_COUNTER(ss.str().c_str(), payloadSize); - auto ret = SstReadRemoteMemory(m_Input, rank, CurrentStep(), - payloadStart, payloadSize, - buffer, dp_info); + auto ret = SstReadRemoteMemory(m_Input, rank, CurrentStep(), payloadStart, + payloadSize, buffer, dp_info); sstReadHandlers.push_back(ret); } // if remote data buffer is not compressed @@ -82,20 +79,17 @@ void SstReader::ReadVariableBlocksRequests( // if both input and output are contiguous memory then // directly issue SstRead and put data in place if (helper::IsIntersectionContiguousSubarray( - subStreamInfo.BlockBox, - subStreamInfo.IntersectionBox, + subStreamInfo.BlockBox, subStreamInfo.IntersectionBox, m_BP3Deserializer->m_IsRowMajor, dummy) && helper::IsIntersectionContiguousSubarray( - helper::StartEndBox( - blockInfo.Start, blockInfo.Count, - m_BP3Deserializer->m_ReverseDimensions), - subStreamInfo.IntersectionBox, - m_BP3Deserializer->m_IsRowMajor, elementOffset)) + helper::StartEndBox(blockInfo.Start, blockInfo.Count, + m_BP3Deserializer->m_ReverseDimensions), + subStreamInfo.IntersectionBox, m_BP3Deserializer->m_IsRowMajor, + elementOffset)) { - auto ret = SstReadRemoteMemory( - m_Input, rank, CurrentStep(), writerBlockStart, - writerBlockSize, blockInfo.Data + elementOffset, - dp_info); + auto ret = SstReadRemoteMemory(m_Input, rank, CurrentStep(), + writerBlockStart, writerBlockSize, + blockInfo.Data + elementOffset, dp_info); sstReadHandlers.push_back(ret); } // if either input or output is not contiguous memory then @@ -105,9 +99,9 @@ void SstReader::ReadVariableBlocksRequests( // batch all read requests buffers.emplace_back(); buffers.back().resize(writerBlockSize); - auto ret = SstReadRemoteMemory( - m_Input, rank, CurrentStep(), writerBlockStart, - writerBlockSize, buffers.back().data(), dp_info); + auto ret = + SstReadRemoteMemory(m_Input, rank, CurrentStep(), writerBlockStart, + writerBlockSize, buffers.back().data(), dp_info); sstReadHandlers.push_back(ret); } } @@ -123,14 +117,13 @@ void SstReader::ReadVariableBlocksRequests( template void SstReader::ReadVariableBlocksFill(Variable &variable, - std::vector> &buffers, - size_t &iter) + std::vector> &buffers, size_t &iter) { PERFSTUBS_SCOPED_TIMER_FUNC(); #ifdef ADIOS2_HAVE_ENDIAN_REVERSE - const bool endianReverse = helper::IsLittleEndian() != - m_BP3Deserializer->m_Minifooter.IsLittleEndian; + const bool endianReverse = + helper::IsLittleEndian() != m_BP3Deserializer->m_Minifooter.IsLittleEndian; #else constexpr bool endianReverse = false; #endif @@ -142,8 +135,7 @@ void SstReader::ReadVariableBlocksFill(Variable &variable, T *originalBlockData = blockInfo.Data; for (const auto &stepPair : blockInfo.StepBlockSubStreamsInfo) { - const std::vector &subStreamsInfo = - stepPair.second; + const std::vector &subStreamsInfo = stepPair.second; for (const helper::SubStreamBoxInfo &subStreamInfo : subStreamsInfo) { // if remote data buffer is compressed @@ -170,10 +162,9 @@ void SstReader::ReadVariableBlocksFill(Variable &variable, // subStreamInfo.BlockBox, // subStreamInfo.IntersectionBox); - m_BP3Deserializer->PostDataRead( - variable, blockInfo, subStreamInfo, - (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor), - threadID); + m_BP3Deserializer->PostDataRead(variable, blockInfo, subStreamInfo, + (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor), + threadID); ++iter; } // if remote data buffer is not compressed @@ -183,21 +174,18 @@ void SstReader::ReadVariableBlocksFill(Variable &variable, // if both input and output are contiguous memory then // directly issue SstRead and put data in place if (helper::IsIntersectionContiguousSubarray( - subStreamInfo.BlockBox, - subStreamInfo.IntersectionBox, + subStreamInfo.BlockBox, subStreamInfo.IntersectionBox, m_BP3Deserializer->m_IsRowMajor, dummy) == false || helper::IsIntersectionContiguousSubarray( - helper::StartEndBox( - blockInfo.Start, blockInfo.Count, - m_BP3Deserializer->m_ReverseDimensions), - subStreamInfo.IntersectionBox, - m_BP3Deserializer->m_IsRowMajor, dummy) == false) + helper::StartEndBox(blockInfo.Start, blockInfo.Count, + m_BP3Deserializer->m_ReverseDimensions), + subStreamInfo.IntersectionBox, m_BP3Deserializer->m_IsRowMajor, + dummy) == false) { size_t blockID = 0; m_BP3Deserializer->ClipContiguousMemory( variable.m_BlocksInfo.at(blockID), buffers[iter], - subStreamInfo.BlockBox, - subStreamInfo.IntersectionBox); + subStreamInfo.BlockBox, subStreamInfo.IntersectionBox); ++iter; } } diff --git a/source/adios2/engine/sst/SstWriter.cpp b/source/adios2/engine/sst/SstWriter.cpp index 66039de421..58421c6fbf 100644 --- a/source/adios2/engine/sst/SstWriter.cpp +++ b/source/adios2/engine/sst/SstWriter.cpp @@ -24,12 +24,10 @@ namespace core namespace engine { -SstWriter::SstWriter(IO &io, const std::string &name, const Mode mode, - helper::Comm comm) +SstWriter::SstWriter(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("SstWriter", io, name, mode, std::move(comm)) { - auto AssembleMetadata = [](void *writer, int CohortSize, - struct _SstData * /*PerRankMetadata*/, + auto AssembleMetadata = [](void *writer, int CohortSize, struct _SstData * /*PerRankMetadata*/, struct _SstData * /*PerRankAttributeData*/) { for (int i = 0; i < CohortSize; i++) { @@ -99,14 +97,13 @@ SstWriter::SstWriter(IO &io, const std::string &name, const Mode mode, to registered Free routine */ }; - auto FreeAssembledMetadata = - [](void * /*writer*/, struct _SstData * /*PerRankMetadata*/, - struct _SstData * /*PerRankAttributeData*/, void *ClientData) { - // std::cout << "Free called with client data " << ClientData - // << std::endl; - free(ClientData); - return; - }; + auto FreeAssembledMetadata = [](void * /*writer*/, struct _SstData * /*PerRankMetadata*/, + struct _SstData * /*PerRankAttributeData*/, void *ClientData) { + // std::cout << "Free called with client data " << ClientData + // << std::endl; + free(ClientData); + return; + }; Init(); @@ -114,8 +111,7 @@ SstWriter::SstWriter(IO &io, const std::string &name, const Mode mode, if (Params.MarshalMethod == SstMarshalBP) { - SstWriterInitMetadataCallback(m_Output, this, AssembleMetadata, - FreeAssembledMetadata); + SstWriterInitMetadataCallback(m_Output, this, AssembleMetadata, FreeAssembledMetadata); } m_IsOpen = true; } @@ -143,20 +139,16 @@ StepStatus SstWriter::BeginStep(StepMode mode, const float timeout_sec) m_BetweenStepPairs = true; if (Params.MarshalMethod == SstMarshalFFS) { - return (StepStatus)SstFFSWriterBeginStep(m_Output, (int)mode, - timeout_sec); + return (StepStatus)SstFFSWriterBeginStep(m_Output, (int)mode, timeout_sec); } else if (Params.MarshalMethod == SstMarshalBP) { // initialize BP serializer, deleted in // SstWriter::EndStep()::lf_FreeBlocks() - m_BP3Serializer = std::unique_ptr( - new format::BP3Serializer(m_Comm)); - m_BP3Serializer->Init(m_IO.m_Parameters, - "in call to BP3::Open for writing", "sst"); - m_BP3Serializer->ResizeBuffer( - m_BP3Serializer->m_Parameters.InitialBufferSize, - "in call to BP3::Open for writing by SST engine"); + m_BP3Serializer = std::unique_ptr(new format::BP3Serializer(m_Comm)); + m_BP3Serializer->Init(m_IO.m_Parameters, "in call to BP3::Open for writing", "sst"); + m_BP3Serializer->ResizeBuffer(m_BP3Serializer->m_Parameters.InitialBufferSize, + "in call to BP3::Open for writing by SST engine"); m_BP3Serializer->m_MetadataSet.TimeStep = 1; m_BP3Serializer->m_MetadataSet.CurrentStep = m_WriterStep; } @@ -164,8 +156,7 @@ StepStatus SstWriter::BeginStep(StepMode mode, const float timeout_sec) { if (!m_BP5Serializer) { - m_BP5Serializer = std::unique_ptr( - new format::BP5Serializer()); + m_BP5Serializer = std::unique_ptr(new format::BP5Serializer()); m_BP5Serializer->m_StatsLevel = Params.StatsLevel; } m_BP5Serializer->InitStep(new format::MallocV("SstWriter", true)); @@ -212,8 +203,7 @@ void SstWriter::MarshalAttributes() } else if (type == helper::GetDataType()) { - core::Attribute &attribute = - *m_IO.InquireAttribute(name); + core::Attribute &attribute = *m_IO.InquireAttribute(name); int element_count = -1; const char *data_addr = attribute.m_DataSingleValue.c_str(); if (!attribute.m_IsSingleValue) @@ -222,33 +212,29 @@ void SstWriter::MarshalAttributes() } if (Params.MarshalMethod == SstMarshalFFS) - SstFFSMarshalAttribute(m_Output, name.c_str(), (int)type, - sizeof(char *), element_count, - data_addr); + SstFFSMarshalAttribute(m_Output, name.c_str(), (int)type, sizeof(char *), + element_count, data_addr); else if (Params.MarshalMethod == SstMarshalBP5) - m_BP5Serializer->MarshalAttribute(name.c_str(), type, - sizeof(char *), element_count, + m_BP5Serializer->MarshalAttribute(name.c_str(), type, sizeof(char *), element_count, data_addr); } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - core::Attribute &attribute = *m_IO.InquireAttribute(name); \ - int element_count = -1; \ - void *data_addr = &attribute.m_DataSingleValue; \ - if (!attribute.m_IsSingleValue) \ - { \ - element_count = attribute.m_Elements; \ - data_addr = attribute.m_DataArray.data(); \ - } \ - if (Params.MarshalMethod == SstMarshalFFS) \ - SstFFSMarshalAttribute(m_Output, attribute.m_Name.c_str(), \ - (int)type, sizeof(T), element_count, \ - data_addr); \ - else if (Params.MarshalMethod == SstMarshalBP5) \ - m_BP5Serializer->MarshalAttribute(attribute.m_Name.c_str(), type, \ - sizeof(T), element_count, \ - data_addr); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + core::Attribute &attribute = *m_IO.InquireAttribute(name); \ + int element_count = -1; \ + void *data_addr = &attribute.m_DataSingleValue; \ + if (!attribute.m_IsSingleValue) \ + { \ + element_count = attribute.m_Elements; \ + data_addr = attribute.m_DataArray.data(); \ + } \ + if (Params.MarshalMethod == SstMarshalFFS) \ + SstFFSMarshalAttribute(m_Output, attribute.m_Name.c_str(), (int)type, sizeof(T), \ + element_count, data_addr); \ + else if (Params.MarshalMethod == SstMarshalBP5) \ + m_BP5Serializer->MarshalAttribute(attribute.m_Name.c_str(), type, sizeof(T), \ + element_count, data_addr); \ } ADIOS2_FOREACH_ATTRIBUTE_PRIMITIVE_STDTYPE_1ARG(declare_type) @@ -259,13 +245,11 @@ void SstWriter::MarshalAttributes() void SstWriter::NotifyEngineAttribute(std::string name, DataType type) noexcept { - helper::Throw( - "SstWriter", "Engine", "ThrowUp", - "Engine does not support NotifyEngineAttribute"); + helper::Throw("SstWriter", "Engine", "ThrowUp", + "Engine does not support NotifyEngineAttribute"); } -void SstWriter::NotifyEngineAttribute(std::string name, AttributeBase *Attr, - void *data) noexcept +void SstWriter::NotifyEngineAttribute(std::string name, AttributeBase *Attr, void *data) noexcept { if (!Params.UseOneTimeAttributes) { @@ -282,9 +266,8 @@ void SstWriter::EndStep() PERFSTUBS_SCOPED_TIMER_FUNC(); if (!m_BetweenStepPairs) { - helper::Throw( - "Engine", "SstWriter", "EndStep", - "EndStep() is called without a successful BeginStep()"); + helper::Throw("Engine", "SstWriter", "EndStep", + "EndStep() is called without a successful BeginStep()"); } m_BetweenStepPairs = false; if (m_WriterDefinitionsLocked && !m_DefinitionsNotified) @@ -304,11 +287,9 @@ void SstWriter::EndStep() { MarshalAttributes(); format::BP5Serializer::TimestepInfo *TSInfo = - new format::BP5Serializer::TimestepInfo( - m_BP5Serializer->CloseTimestep(m_WriterStep)); + new format::BP5Serializer::TimestepInfo(m_BP5Serializer->CloseTimestep(m_WriterStep)); auto lf_FreeBlocks = [](void *vBlock) { - BP5DataBlock *BlockToFree = - reinterpret_cast(vBlock); + BP5DataBlock *BlockToFree = reinterpret_cast(vBlock); // Free data and metadata blocks here. BlockToFree is the newblock // value in the enclosing function. free(BlockToFree->MetaMetaBlocks); @@ -346,19 +327,16 @@ void SstWriter::EndStep() newblock->TSInfo = TSInfo; if (TSInfo->AttributeEncodeBuffer) { - newblock->attribute_data.DataSize = - TSInfo->AttributeEncodeBuffer->m_FixedSize; - newblock->attribute_data.block = - TSInfo->AttributeEncodeBuffer->Data(); + newblock->attribute_data.DataSize = TSInfo->AttributeEncodeBuffer->m_FixedSize; + newblock->attribute_data.block = TSInfo->AttributeEncodeBuffer->Data(); } else { newblock->attribute_data.DataSize = 0; newblock->attribute_data.block = NULL; } - SstProvideTimestepMM(m_Output, &newblock->metadata, &newblock->data, - m_WriterStep, lf_FreeBlocks, newblock, - &newblock->attribute_data, NULL, newblock, + SstProvideTimestepMM(m_Output, &newblock->metadata, &newblock->data, m_WriterStep, + lf_FreeBlocks, newblock, &newblock->attribute_data, NULL, newblock, MetaMetaBlocks); } else if (Params.MarshalMethod == SstMarshalBP) @@ -376,8 +354,7 @@ void SstWriter::EndStep() // (explicit deallocation callback). PERFSTUBS_TIMER_START(timer, "Marshaling overhead"); auto lf_FreeBlocks = [](void *vBlock) { - BP3DataBlock *BlockToFree = - reinterpret_cast(vBlock); + BP3DataBlock *BlockToFree = reinterpret_cast(vBlock); // Free data and metadata blocks here. BlockToFree is the newblock // value in the enclosing function. delete BlockToFree->serializer; @@ -385,8 +362,7 @@ void SstWriter::EndStep() }; m_BP3Serializer->CloseStream(m_IO, true); - m_BP3Serializer->AggregateCollectiveMetadata( - m_Comm, m_BP3Serializer->m_Metadata, true); + m_BP3Serializer->AggregateCollectiveMetadata(m_Comm, m_BP3Serializer->m_Metadata, true); BP3DataBlock *newblock = new BP3DataBlock; newblock->metadata.DataSize = m_BP3Serializer->m_Metadata.m_Position; newblock->metadata.block = m_BP3Serializer->m_Metadata.m_Buffer.data(); @@ -394,9 +370,8 @@ void SstWriter::EndStep() newblock->data.block = m_BP3Serializer->m_Data.m_Buffer.data(); newblock->serializer = m_BP3Serializer.release(); PERFSTUBS_TIMER_STOP(timer); - SstProvideTimestep(m_Output, &newblock->metadata, &newblock->data, - m_WriterStep, lf_FreeBlocks, newblock, NULL, NULL, - NULL); + SstProvideTimestep(m_Output, &newblock->metadata, &newblock->data, m_WriterStep, + lf_FreeBlocks, newblock, NULL, NULL, NULL); } else { @@ -417,22 +392,21 @@ void SstWriter::Init() if (Params.verbose < 0 || Params.verbose > 5) { - helper::Throw( - "Engine", "SstWriter", "Init", - "ERROR: Method verbose argument must be an " - "integer in the range [0,5], in call to " - "Open or Engine constructor\n"); + helper::Throw("Engine", "SstWriter", "Init", + "ERROR: Method verbose argument must be an " + "integer in the range [0,5], in call to " + "Open or Engine constructor\n"); } } -#define declare_type(T) \ - void SstWriter::DoPutSync(Variable &variable, const T *values) \ - { \ - PutSyncCommon(variable, values); \ - } \ - void SstWriter::DoPutDeferred(Variable &variable, const T *values) \ - { \ - PutSyncCommon(variable, values); \ +#define declare_type(T) \ + void SstWriter::DoPutSync(Variable &variable, const T *values) \ + { \ + PutSyncCommon(variable, values); \ + } \ + void SstWriter::DoPutDeferred(Variable &variable, const T *values) \ + { \ + PutSyncCommon(variable, values); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) @@ -472,9 +446,9 @@ void SstWriter::PutStructCommon(VariableBase &variable, const void *data) DimCount = variable.m_Count.size(); Count = variable.m_Count.data(); } - m_BP5Serializer->Marshal((void *)&variable, variable.m_Name.c_str(), - variable.m_Type, variable.m_ElementSize, DimCount, - Shape, Count, Start, data, true, nullptr); + m_BP5Serializer->Marshal((void *)&variable, variable.m_Name.c_str(), variable.m_Type, + variable.m_ElementSize, DimCount, Shape, Count, Start, data, true, + nullptr); } void SstWriter::DoPutStructSync(VariableStruct &variable, const void *data) @@ -499,8 +473,8 @@ void SstWriter::DestructorClose(bool Verbose) noexcept { if (Verbose) { - std::cerr << "SST Writer \"" << m_Name - << "\" Destroyed without a prior Close()." << std::endl; + std::cerr << "SST Writer \"" << m_Name << "\" Destroyed without a prior Close()." + << std::endl; std::cerr << "This may result in loss of data and/or disconnect " "warnings for a connected SST Reader." << std::endl; diff --git a/source/adios2/engine/sst/SstWriter.h b/source/adios2/engine/sst/SstWriter.h index 5f0d5cfce1..78118aa18c 100644 --- a/source/adios2/engine/sst/SstWriter.h +++ b/source/adios2/engine/sst/SstWriter.h @@ -31,20 +31,17 @@ class SstWriter : public Engine { public: - SstWriter(IO &io, const std::string &name, const Mode mode, - helper::Comm comm); + SstWriter(IO &io, const std::string &name, const Mode mode, helper::Comm comm); virtual ~SstWriter(); - StepStatus BeginStep(StepMode mode, - const float timeoutSeconds = -1.0) final; + StepStatus BeginStep(StepMode mode, const float timeoutSeconds = -1.0) final; size_t CurrentStep() const final; void PerformPuts() final; void EndStep() final; void Flush(const int transportIndex = -1) final; void NotifyEngineAttribute(std::string name, DataType type) noexcept; - void NotifyEngineAttribute(std::string name, AttributeBase *Attr, - void *data) noexcept; + void NotifyEngineAttribute(std::string name, AttributeBase *Attr, void *data) noexcept; /** * Called if destructor is called on an open engine. Should warn or take @@ -56,8 +53,8 @@ class SstWriter : public Engine void Init(); ///< calls InitCapsules and InitTransports based on Method, /// called from constructor -#define declare_type(T) \ - void DoPutSync(Variable &variable, const T *values) final; \ +#define declare_type(T) \ + void DoPutSync(Variable &variable, const T *values) final; \ void DoPutDeferred(Variable &, const T *) final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/engine/sst/SstWriter.tcc b/source/adios2/engine/sst/SstWriter.tcc index f97f4d8879..b2e850500f 100644 --- a/source/adios2/engine/sst/SstWriter.tcc +++ b/source/adios2/engine/sst/SstWriter.tcc @@ -37,8 +37,7 @@ void SstWriter::PutSyncCommon(Variable &variable, const T *values) "BeginStep/EndStep pairs"); } - if ((Params.MarshalMethod == SstMarshalFFS) || - (Params.MarshalMethod == SstMarshalBP5)) + if ((Params.MarshalMethod == SstMarshalFFS) || (Params.MarshalMethod == SstMarshalBP5)) { size_t *Shape = NULL; size_t *Start = NULL; @@ -66,8 +65,8 @@ void SstWriter::PutSyncCommon(Variable &variable, const T *values) if (Params.MarshalMethod == SstMarshalFFS) { SstFFSMarshal(m_Output, (void *)&variable, variable.m_Name.c_str(), - (int)variable.m_Type, variable.m_ElementSize, - DimCount, Shape, Count, Start, values); + (int)variable.m_Type, variable.m_ElementSize, DimCount, Shape, Count, + Start, values); } else { @@ -75,60 +74,47 @@ void SstWriter::PutSyncCommon(Variable &variable, const T *values) { std::string &source = *(std::string *)values; void *p = &(source[0]); - m_BP5Serializer->Marshal( - (void *)&variable, variable.m_Name.c_str(), variable.m_Type, - variable.m_ElementSize, DimCount, Shape, Count, Start, &p, - true, nullptr); + m_BP5Serializer->Marshal((void *)&variable, variable.m_Name.c_str(), + variable.m_Type, variable.m_ElementSize, DimCount, Shape, + Count, Start, &p, true, nullptr); } else { - m_BP5Serializer->Marshal( - (void *)&variable, variable.m_Name.c_str(), variable.m_Type, - variable.m_ElementSize, DimCount, Shape, Count, Start, - values, true, nullptr); + m_BP5Serializer->Marshal((void *)&variable, variable.m_Name.c_str(), + variable.m_Type, variable.m_ElementSize, DimCount, Shape, + Count, Start, values, true, nullptr); } } } else if (Params.MarshalMethod == SstMarshalBP) { - auto &blockInfo = variable.SetBlockInfo( - values, m_BP3Serializer->m_MetadataSet.CurrentStep); + auto &blockInfo = variable.SetBlockInfo(values, m_BP3Serializer->m_MetadataSet.CurrentStep); if (!m_BP3Serializer->m_MetadataSet.DataPGIsOpen) { m_BP3Serializer->PutProcessGroupIndex( - m_IO.m_Name, - (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" - : "Fortran", + m_IO.m_Name, (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran", {"SST"}); } const size_t dataSize = helper::PayloadSize(blockInfo.Data, blockInfo.Count) + - m_BP3Serializer->GetBPIndexSizeInData(variable.m_Name, - blockInfo.Count); - format::BP3Base::ResizeResult resizeResult = - m_BP3Serializer->ResizeBuffer( - dataSize, "in call to variable " + variable.m_Name + - " Put adios2::Mode::Sync"); + m_BP3Serializer->GetBPIndexSizeInData(variable.m_Name, blockInfo.Count); + format::BP3Base::ResizeResult resizeResult = m_BP3Serializer->ResizeBuffer( + dataSize, "in call to variable " + variable.m_Name + " Put adios2::Mode::Sync"); if (resizeResult == format::BP3Base::ResizeResult::Failure) { - helper::Throw( - "Engine", "SstWriter", "PutSyncCommon", - "Failed to resize BP3 serializer buffer"); + helper::Throw("Engine", "SstWriter", "PutSyncCommon", + "Failed to resize BP3 serializer buffer"); } - const bool sourceRowMajor = - (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor); - m_BP3Serializer->PutVariableMetadata(variable, blockInfo, - sourceRowMajor); - m_BP3Serializer->PutVariablePayload(variable, blockInfo, - sourceRowMajor); + const bool sourceRowMajor = (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor); + m_BP3Serializer->PutVariableMetadata(variable, blockInfo, sourceRowMajor); + m_BP3Serializer->PutVariablePayload(variable, blockInfo, sourceRowMajor); variable.m_BlocksInfo.clear(); } else { - helper::Throw("Engine", "SstWriter", - "PutSyncCommon", + helper::Throw("Engine", "SstWriter", "PutSyncCommon", "unknown marshaling method"); } } diff --git a/source/adios2/helper/adiosCUDA.cu b/source/adios2/helper/adiosCUDA.cu index 4654450abb..603968e2b0 100644 --- a/source/adios2/helper/adiosCUDA.cu +++ b/source/adios2/helper/adiosCUDA.cu @@ -13,14 +13,12 @@ #include "adiosCUDA.h" -void adios2::helper::MemcpyGPUToBuffer(char *dst, const char *GPUbuffer, - size_t byteCount) +void adios2::helper::MemcpyGPUToBuffer(char *dst, const char *GPUbuffer, size_t byteCount) { cudaMemcpy(dst, GPUbuffer, byteCount, cudaMemcpyDeviceToHost); } -void adios2::helper::MemcpyBufferToGPU(char *GPUbuffer, const char *src, - size_t byteCount) +void adios2::helper::MemcpyBufferToGPU(char *GPUbuffer, const char *src, size_t byteCount) { cudaMemcpy(GPUbuffer, src, byteCount, cudaMemcpyHostToDevice); } @@ -32,24 +30,20 @@ void CUDAMinMaxImpl(const T *values, const size_t size, T &min, T &max) { thrust::device_ptr dev_ptr(values); auto res = thrust::minmax_element(dev_ptr, dev_ptr + size); - cudaMemcpy(&min, thrust::raw_pointer_cast(res.first), sizeof(T), - cudaMemcpyDeviceToHost); - cudaMemcpy(&max, thrust::raw_pointer_cast(res.second), sizeof(T), - cudaMemcpyDeviceToHost); + cudaMemcpy(&min, thrust::raw_pointer_cast(res.first), sizeof(T), cudaMemcpyDeviceToHost); + cudaMemcpy(&max, thrust::raw_pointer_cast(res.second), sizeof(T), cudaMemcpyDeviceToHost); } // types non supported on the device -void CUDAMinMaxImpl(const long double * /*values*/, const size_t /*size*/, - long double & /*min*/, long double & /*max*/) +void CUDAMinMaxImpl(const long double * /*values*/, const size_t /*size*/, long double & /*min*/, + long double & /*max*/) { } -void CUDAMinMaxImpl(const std::complex * /*values*/, - const size_t /*size*/, std::complex & /*min*/, - std::complex & /*max*/) +void CUDAMinMaxImpl(const std::complex * /*values*/, const size_t /*size*/, + std::complex & /*min*/, std::complex & /*max*/) { } -void CUDAMinMaxImpl(const std::complex * /*values*/, - const size_t /*size*/, std::complex & /*min*/, - std::complex & /*max*/) +void CUDAMinMaxImpl(const std::complex * /*values*/, const size_t /*size*/, + std::complex & /*min*/, std::complex & /*max*/) { } } @@ -66,15 +60,13 @@ bool adios2::helper::IsGPUbuffer(const void *ptr) } template -void adios2::helper::GPUMinMax(const T *values, const size_t size, T &min, - T &max) +void adios2::helper::GPUMinMax(const T *values, const size_t size, T &min, T &max) { CUDAMinMaxImpl(values, size, min, max); } -#define declare_type(T) \ - template void adios2::helper::GPUMinMax( \ - const T *values, const size_t size, T &min, T &max); +#define declare_type(T) \ + template void adios2::helper::GPUMinMax(const T *values, const size_t size, T &min, T &max); ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/helper/adiosCUDA.h b/source/adios2/helper/adiosCUDA.h index 26c158dc5c..7140de2afe 100644 --- a/source/adios2/helper/adiosCUDA.h +++ b/source/adios2/helper/adiosCUDA.h @@ -20,16 +20,13 @@ namespace helper * CUDA kernel for computing the min and max from a GPU buffer */ template -ADIOS2_EXPORT void GPUMinMax(const T *values, const size_t size, T &min, - T &max); +ADIOS2_EXPORT void GPUMinMax(const T *values, const size_t size, T &min, T &max); /** * Wrapper around cudaMemcpy needed for isolating CUDA interface dependency */ -ADIOS2_EXPORT void MemcpyGPUToBuffer(char *dst, const char *GPUbuffer, - size_t byteCount); -ADIOS2_EXPORT void MemcpyBufferToGPU(char *GPUbuffer, const char *src, - size_t byteCount); +ADIOS2_EXPORT void MemcpyGPUToBuffer(char *dst, const char *GPUbuffer, size_t byteCount); +ADIOS2_EXPORT void MemcpyBufferToGPU(char *GPUbuffer, const char *src, size_t byteCount); ADIOS2_EXPORT bool IsGPUbuffer(const void *ptr); diff --git a/source/adios2/helper/adiosComm.cpp b/source/adios2/helper/adiosComm.cpp index 679ead0b8a..9109a35212 100644 --- a/source/adios2/helper/adiosComm.cpp +++ b/source/adios2/helper/adiosComm.cpp @@ -55,25 +55,16 @@ Comm &Comm::operator=(Comm &&comm) = default; void Comm::Free(const std::string &hint) { m_Impl->Free(hint); } -Comm Comm::Duplicate(const std::string &hint) const -{ - return Comm(m_Impl->Duplicate(hint)); -} +Comm Comm::Duplicate(const std::string &hint) const { return Comm(m_Impl->Duplicate(hint)); } Comm Comm::Split(int color, int key, const std::string &hint) const { return Comm(m_Impl->Split(color, key, hint)); } -Comm Comm::World(const std::string &hint) const -{ - return Comm(m_Impl->World(hint)); -} +Comm Comm::World(const std::string &hint) const { return Comm(m_Impl->World(hint)); } -Comm Comm::GroupByShm(const std::string &hint) const -{ - return Comm(m_Impl->GroupByShm(hint)); -} +Comm Comm::GroupByShm(const std::string &hint) const { return Comm(m_Impl->GroupByShm(hint)); } int Comm::Rank() const { return m_Impl->Rank(); } @@ -83,8 +74,7 @@ bool Comm::IsMPI() const { return m_Impl->IsMPI(); } void Comm::Barrier(const std::string &hint) const { m_Impl->Barrier(hint); } -std::string Comm::BroadcastFile(const std::string &fileName, - const std::string hint, +std::string Comm::BroadcastFile(const std::string &fileName, const std::string hint, const int rankSource) const { int rank = this->Rank(); @@ -101,8 +91,7 @@ std::string Comm::BroadcastFile(const std::string &fileName, return fileContents; } -std::vector Comm::GetGathervDisplacements(const size_t *counts, - const size_t countsSize) +std::vector Comm::GetGathervDisplacements(const size_t *counts, const size_t countsSize) { std::vector displacements(countsSize); displacements[0] = 0; @@ -119,18 +108,13 @@ Comm::Win Comm::Win_allocate_shared(size_t size, int disp_unit, void *baseptr, { return m_Impl->Win_allocate_shared(size, disp_unit, baseptr, hint); } -int Comm::Win_shared_query(Comm::Win &win, int rank, size_t *size, - int *disp_unit, void *baseptr, +int Comm::Win_shared_query(Comm::Win &win, int rank, size_t *size, int *disp_unit, void *baseptr, const std::string &hint) { return m_Impl->Win_shared_query(win, rank, size, disp_unit, baseptr, hint); } -int Comm::Win_free(Win &win, const std::string &hint) -{ - return m_Impl->Win_free(win, hint); -} -int Comm::Win_lock(LockType lock_type, int rank, int assert, Win &win, - const std::string &hint) +int Comm::Win_free(Win &win, const std::string &hint) { return m_Impl->Win_free(win, hint); } +int Comm::Win_lock(LockType lock_type, int rank, int assert, Win &win, const std::string &hint) { return m_Impl->Win_lock(lock_type, rank, assert, win, hint); } @@ -194,10 +178,7 @@ CommImpl::~CommImpl() = default; size_t CommImpl::SizeOf(Datatype datatype) { return ToSize(datatype); } -Comm CommImpl::MakeComm(std::unique_ptr impl) -{ - return Comm(std::move(impl)); -} +Comm CommImpl::MakeComm(std::unique_ptr impl) { return Comm(std::move(impl)); } Comm::Req CommImpl::MakeReq(std::unique_ptr impl) { diff --git a/source/adios2/helper/adiosComm.h b/source/adios2/helper/adiosComm.h index ac9293a56f..a7e35e20d0 100644 --- a/source/adios2/helper/adiosComm.h +++ b/source/adios2/helper/adiosComm.h @@ -120,8 +120,7 @@ class Comm * Creates a new communicator covering the subset of the original * processes that pass the same 'color'. Ranks assigned by 'key' order. */ - Comm Split(int color, int key, - const std::string &hint = std::string()) const; + Comm Split(int color, int key, const std::string &hint = std::string()) const; /** * @brief Create a communicator covering all processes. @@ -177,13 +176,12 @@ class Comm * @param rankDestination rank in which arrays are gathered (root) */ template - void GathervArrays(const T *source, size_t sourceCount, - const size_t *counts, size_t countsSize, T *destination, - int rankDestination = 0) const; + void GathervArrays(const T *source, size_t sourceCount, const size_t *counts, size_t countsSize, + T *destination, int rankDestination = 0) const; template - void GathervVectors(const std::vector &in, std::vector &out, - size_t &position, int rankDestination = 0) const; + void GathervVectors(const std::vector &in, std::vector &out, size_t &position, + int rankDestination = 0) const; /** * Perform AllGather for source value * @param source input @@ -194,23 +192,19 @@ class Comm std::vector AllGatherValues(const T source) const; template - T ReduceValues(const T source, Op op = Op::Sum, - const int rankDestination = 0) const; + T ReduceValues(const T source, Op op = Op::Sum, const int rankDestination = 0) const; template T BroadcastValue(const T &input, const int rankSource = 0) const; template - void BroadcastVector(std::vector &vector, - const int rankSource = 0) const; + void BroadcastVector(std::vector &vector, const int rankSource = 0) const; - std::string BroadcastFile(const std::string &fileName, - const std::string hint = "", + std::string BroadcastFile(const std::string &fileName, const std::string hint = "", const int rankSource = 0) const; template - void Allgather(const TSend *sendbuf, size_t sendcount, TRecv *recvbuf, - size_t recvcount, + void Allgather(const TSend *sendbuf, size_t sendcount, TRecv *recvbuf, size_t recvcount, const std::string &hint = std::string()) const; template @@ -223,18 +217,15 @@ class Comm const std::string &hint = std::string()) const; template - void Bcast(T *buffer, size_t count, int root, - const std::string &hint = std::string()) const; + void Bcast(T *buffer, size_t count, int root, const std::string &hint = std::string()) const; template - void Gather(const TSend *sendbuf, size_t sendcount, TRecv *recvbuf, - size_t recvcount, int root, + void Gather(const TSend *sendbuf, size_t sendcount, TRecv *recvbuf, size_t recvcount, int root, const std::string &hint = std::string()) const; template - void Gatherv(const TSend *sendbuf, size_t sendcount, TRecv *recvbuf, - const size_t *recvcounts, const size_t *displs, int root, - const std::string &hint = std::string()) const; + void Gatherv(const TSend *sendbuf, size_t sendcount, TRecv *recvbuf, const size_t *recvcounts, + const size_t *displs, int root, const std::string &hint = std::string()) const; template void Reduce(const T *sendbuf, T *recvbuf, size_t count, Op op, int root, @@ -253,8 +244,7 @@ class Comm const std::string &hint = std::string()) const; template - void Scatter(const TSend *sendbuf, size_t sendcount, TRecv *recvbuf, - size_t recvcount, int root, + void Scatter(const TSend *sendbuf, size_t sendcount, TRecv *recvbuf, size_t recvcount, int root, const std::string &hint = std::string()) const; template @@ -267,15 +257,13 @@ class Comm Win Win_allocate_shared(size_t size, int disp_unit, void *baseptr, const std::string &hint = std::string()); - int Win_shared_query(Win &win, int rank, size_t *size, int *disp_unit, - void *baseptr, + int Win_shared_query(Win &win, int rank, size_t *size, int *disp_unit, void *baseptr, const std::string &hint = std::string()); int Win_free(Win &win, const std::string &hint = std::string()); int Win_lock(LockType lock_type, int rank, int assert, Win &win, const std::string &hint = std::string()); int Win_unlock(int rank, Win &win, const std::string &hint = std::string()); - int Win_lock_all(int assert, Win &win, - const std::string &hint = std::string()); + int Win_lock_all(int assert, Win &win, const std::string &hint = std::string()); int Win_unlock_all(Win &win, const std::string &hint = std::string()); private: @@ -447,88 +435,66 @@ class CommImpl virtual ~CommImpl() = 0; virtual void Free(const std::string &hint) = 0; - virtual std::unique_ptr - Duplicate(const std::string &hint) const = 0; - virtual std::unique_ptr Split(int color, int key, - const std::string &hint) const = 0; + virtual std::unique_ptr Duplicate(const std::string &hint) const = 0; + virtual std::unique_ptr Split(int color, int key, const std::string &hint) const = 0; virtual std::unique_ptr World(const std::string &hint) const = 0; - virtual std::unique_ptr - GroupByShm(const std::string &hint) const = 0; + virtual std::unique_ptr GroupByShm(const std::string &hint) const = 0; virtual int Rank() const = 0; virtual int Size() const = 0; virtual bool IsMPI() const = 0; virtual void Barrier(const std::string &hint) const = 0; - virtual void Allgather(const void *sendbuf, size_t sendcount, - Datatype sendtype, void *recvbuf, size_t recvcount, - Datatype recvtype, - const std::string &hint) const = 0; - virtual void Allgatherv(const void *sendbuf, size_t sendcount, - Datatype sendtype, void *recvbuf, - const size_t *recvcounts, const size_t *displs, - Datatype recvtype, + virtual void Allgather(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + size_t recvcount, Datatype recvtype, const std::string &hint) const = 0; + virtual void Allgatherv(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + const size_t *recvcounts, const size_t *displs, Datatype recvtype, const std::string &hint) const = 0; - virtual void Allreduce(const void *sendbuf, void *recvbuf, size_t count, - Datatype datatype, Comm::Op op, - const std::string &hint) const = 0; + virtual void Allreduce(const void *sendbuf, void *recvbuf, size_t count, Datatype datatype, + Comm::Op op, const std::string &hint) const = 0; virtual void Bcast(void *buffer, size_t count, Datatype datatype, int root, const std::string &hint) const = 0; - virtual void Gather(const void *sendbuf, size_t sendcount, - Datatype sendtype, void *recvbuf, size_t recvcount, - Datatype recvtype, int root, + virtual void Gather(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + size_t recvcount, Datatype recvtype, int root, const std::string &hint) const = 0; - virtual void Gatherv(const void *sendbuf, size_t sendcount, - Datatype sendtype, void *recvbuf, - const size_t *recvcounts, const size_t *displs, - Datatype recvtype, int root, - const std::string &hint) const = 0; + virtual void Gatherv(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + const size_t *recvcounts, const size_t *displs, Datatype recvtype, + int root, const std::string &hint) const = 0; - virtual void Reduce(const void *sendbuf, void *recvbuf, size_t count, - Datatype datatype, Comm::Op op, int root, - const std::string &hint) const = 0; + virtual void Reduce(const void *sendbuf, void *recvbuf, size_t count, Datatype datatype, + Comm::Op op, int root, const std::string &hint) const = 0; - virtual void ReduceInPlace(void *buf, size_t count, Datatype datatype, - Comm::Op op, int root, + virtual void ReduceInPlace(void *buf, size_t count, Datatype datatype, Comm::Op op, int root, const std::string &hint) const = 0; - virtual void Send(const void *buf, size_t count, Datatype datatype, - int dest, int tag, const std::string &hint) const = 0; + virtual void Send(const void *buf, size_t count, Datatype datatype, int dest, int tag, + const std::string &hint) const = 0; - virtual Comm::Status Recv(void *buf, size_t count, Datatype datatype, - int source, int tag, + virtual Comm::Status Recv(void *buf, size_t count, Datatype datatype, int source, int tag, const std::string &hint) const = 0; - virtual void Scatter(const void *sendbuf, size_t sendcount, - Datatype sendtype, void *recvbuf, size_t recvcount, - Datatype recvtype, int root, + virtual void Scatter(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + size_t recvcount, Datatype recvtype, int root, const std::string &hint) const = 0; - virtual Comm::Req Isend(const void *buffer, size_t count, Datatype datatype, - int dest, int tag, + virtual Comm::Req Isend(const void *buffer, size_t count, Datatype datatype, int dest, int tag, const std::string &hint) const = 0; - virtual Comm::Req Irecv(void *buffer, size_t count, Datatype datatype, - int source, int tag, + virtual Comm::Req Irecv(void *buffer, size_t count, Datatype datatype, int source, int tag, const std::string &hint) const = 0; - virtual Comm::Win Win_allocate_shared(size_t size, int disp_unit, - void *baseptr, + virtual Comm::Win Win_allocate_shared(size_t size, int disp_unit, void *baseptr, const std::string &hint) const = 0; - virtual int Win_shared_query(Comm::Win &win, int rank, size_t *size, - int *disp_unit, void *baseptr, - const std::string &hint) const = 0; + virtual int Win_shared_query(Comm::Win &win, int rank, size_t *size, int *disp_unit, + void *baseptr, const std::string &hint) const = 0; virtual int Win_free(Comm::Win &win, const std::string &hint) const = 0; - virtual int Win_lock(Comm::LockType lock_type, int rank, int assert, - Comm::Win &win, const std::string &hint) const = 0; - virtual int Win_unlock(int rank, Comm::Win &win, - const std::string &hint) const = 0; - virtual int Win_lock_all(int assert, Comm::Win &win, - const std::string &hint) const = 0; - virtual int Win_unlock_all(Comm::Win &win, - const std::string &hint) const = 0; + virtual int Win_lock(Comm::LockType lock_type, int rank, int assert, Comm::Win &win, + const std::string &hint) const = 0; + virtual int Win_unlock(int rank, Comm::Win &win, const std::string &hint) const = 0; + virtual int Win_lock_all(int assert, Comm::Win &win, const std::string &hint) const = 0; + virtual int Win_unlock_all(Comm::Win &win, const std::string &hint) const = 0; static size_t SizeOf(Datatype datatype); static Comm MakeComm(std::unique_ptr impl); diff --git a/source/adios2/helper/adiosComm.tcc b/source/adios2/helper/adiosComm.tcc index ca2d769163..4a1b8d43f5 100644 --- a/source/adios2/helper/adiosComm.tcc +++ b/source/adios2/helper/adiosComm.tcc @@ -18,8 +18,7 @@ namespace helper // BroadcastValue full specializations forward-declared in 'adiosComm.inl'. template <> -std::string Comm::BroadcastValue(const std::string &input, - const int rankSource) const +std::string Comm::BroadcastValue(const std::string &input, const int rankSource) const { const size_t inputSize = input.size(); const size_t length = this->BroadcastValue(inputSize, rankSource); diff --git a/source/adios2/helper/adiosCommDummy.cpp b/source/adios2/helper/adiosCommDummy.cpp index c9d4eae7fe..f7453ca5a7 100644 --- a/source/adios2/helper/adiosCommDummy.cpp +++ b/source/adios2/helper/adiosCommDummy.cpp @@ -23,8 +23,7 @@ namespace void CommDummyError(const std::string &msg) { helper::Log("Helper", "adiosCommDummy", "CommDummyError", - "CommDummy: a function returned error code '" + msg + - "'. Aborting!", + "CommDummy: a function returned error code '" + msg + "'. Aborting!", helper::FATALERROR); std::abort(); } @@ -60,76 +59,67 @@ class CommImplDummy : public CommImpl void Free(const std::string &hint) override; std::unique_ptr Duplicate(const std::string &hint) const override; - std::unique_ptr Split(int color, int key, - const std::string &hint) const override; + std::unique_ptr Split(int color, int key, const std::string &hint) const override; std::unique_ptr World(const std::string &hint) const override; - virtual std::unique_ptr - GroupByShm(const std::string &hint) const override; + virtual std::unique_ptr GroupByShm(const std::string &hint) const override; int Rank() const override; int Size() const override; bool IsMPI() const override; void Barrier(const std::string &hint) const override; - void Allgather(const void *sendbuf, size_t sendcount, Datatype sendtype, - void *recvbuf, size_t recvcount, Datatype recvtype, - const std::string &hint) const override; + void Allgather(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + size_t recvcount, Datatype recvtype, const std::string &hint) const override; - void Allgatherv(const void *sendbuf, size_t sendcount, Datatype sendtype, - void *recvbuf, const size_t *recvcounts, - const size_t *displs, Datatype recvtype, + void Allgatherv(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + const size_t *recvcounts, const size_t *displs, Datatype recvtype, const std::string &hint) const override; - void Allreduce(const void *sendbuf, void *recvbuf, size_t count, - Datatype datatype, Comm::Op op, + void Allreduce(const void *sendbuf, void *recvbuf, size_t count, Datatype datatype, Comm::Op op, const std::string &hint) const override; void Bcast(void *buffer, size_t count, Datatype datatype, int root, const std::string &hint) const override; - void Gather(const void *sendbuf, size_t sendcount, Datatype sendtype, - void *recvbuf, size_t recvcount, Datatype recvtype, int root, + void Gather(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + size_t recvcount, Datatype recvtype, int root, const std::string &hint) const override; - void Gatherv(const void *sendbuf, size_t sendcount, Datatype sendtype, - void *recvbuf, const size_t *recvcounts, const size_t *displs, - Datatype recvtype, int root, + void Gatherv(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + const size_t *recvcounts, const size_t *displs, Datatype recvtype, int root, const std::string &hint) const override; - void Reduce(const void *sendbuf, void *recvbuf, size_t count, - Datatype datatype, Comm::Op op, int root, - const std::string &hint) const override; + void Reduce(const void *sendbuf, void *recvbuf, size_t count, Datatype datatype, Comm::Op op, + int root, const std::string &hint) const override; - void ReduceInPlace(void *buf, size_t count, Datatype datatype, Comm::Op op, - int root, const std::string &hint) const override; + void ReduceInPlace(void *buf, size_t count, Datatype datatype, Comm::Op op, int root, + const std::string &hint) const override; - void Send(const void *buf, size_t count, Datatype datatype, int dest, - int tag, const std::string &hint) const override; + void Send(const void *buf, size_t count, Datatype datatype, int dest, int tag, + const std::string &hint) const override; - Comm::Status Recv(void *buf, size_t count, Datatype datatype, int source, - int tag, const std::string &hint) const override; + Comm::Status Recv(void *buf, size_t count, Datatype datatype, int source, int tag, + const std::string &hint) const override; - void Scatter(const void *sendbuf, size_t sendcount, Datatype sendtype, - void *recvbuf, size_t recvcount, Datatype recvtype, int root, + void Scatter(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + size_t recvcount, Datatype recvtype, int root, const std::string &hint) const override; - Comm::Req Isend(const void *buffer, size_t count, Datatype datatype, - int dest, int tag, const std::string &hint) const override; + Comm::Req Isend(const void *buffer, size_t count, Datatype datatype, int dest, int tag, + const std::string &hint) const override; - Comm::Req Irecv(void *buffer, size_t count, Datatype datatype, int source, - int tag, const std::string &hint) const override; + Comm::Req Irecv(void *buffer, size_t count, Datatype datatype, int source, int tag, + const std::string &hint) const override; Comm::Win Win_allocate_shared(size_t size, int disp_unit, void *baseptr, const std::string &hint) const override; - int Win_shared_query(Comm::Win &win, int rank, size_t *size, int *disp_unit, - void *baseptr, const std::string &hint) const override; + int Win_shared_query(Comm::Win &win, int rank, size_t *size, int *disp_unit, void *baseptr, + const std::string &hint) const override; int Win_free(Comm::Win &win, const std::string &hint) const override; int Win_lock(Comm::LockType lock_type, int rank, int assert, Comm::Win &win, const std::string &hint) const override; - int Win_unlock(int rank, Comm::Win &win, - const std::string &hint) const override; - int Win_lock_all(int assert, Comm::Win &win, - const std::string &hint) const override; + int Win_unlock(int rank, Comm::Win &win, const std::string &hint) const override; + int Win_lock_all(int assert, Comm::Win &win, const std::string &hint) const override; int Win_unlock_all(Comm::Win &win, const std::string &hint) const override; }; @@ -142,8 +132,7 @@ std::unique_ptr CommImplDummy::Duplicate(const std::string &) const return std::unique_ptr(new CommImplDummy()); } -std::unique_ptr CommImplDummy::Split(int, int, - const std::string &) const +std::unique_ptr CommImplDummy::Split(int, int, const std::string &) const { return std::unique_ptr(new CommImplDummy()); } @@ -166,18 +155,15 @@ bool CommImplDummy::IsMPI() const { return false; } void CommImplDummy::Barrier(const std::string &) const {} -void CommImplDummy::Allgather(const void *sendbuf, size_t sendcount, - Datatype sendtype, void *recvbuf, - size_t recvcount, Datatype recvtype, +void CommImplDummy::Allgather(const void *sendbuf, size_t sendcount, Datatype sendtype, + void *recvbuf, size_t recvcount, Datatype recvtype, const std::string &hint) const { - CommImplDummy::Gather(sendbuf, sendcount, sendtype, recvbuf, recvcount, - recvtype, 0, hint); + CommImplDummy::Gather(sendbuf, sendcount, sendtype, recvbuf, recvcount, recvtype, 0, hint); } -void CommImplDummy::Allgatherv(const void *sendbuf, size_t sendcount, - Datatype sendtype, void *recvbuf, - const size_t *recvcounts, const size_t *displs, +void CommImplDummy::Allgatherv(const void *sendbuf, size_t sendcount, Datatype sendtype, + void *recvbuf, const size_t *recvcounts, const size_t *displs, Datatype recvtype, const std::string &hint) const { const size_t recvcount = recvcounts[0]; @@ -185,26 +171,19 @@ void CommImplDummy::Allgatherv(const void *sendbuf, size_t sendcount, { return CommDummyError("send and recv counts differ"); } - CommImplDummy::Gather(sendbuf, sendcount, sendtype, recvbuf, recvcount, - recvtype, 0, hint); + CommImplDummy::Gather(sendbuf, sendcount, sendtype, recvbuf, recvcount, recvtype, 0, hint); } -void CommImplDummy::Allreduce(const void *sendbuf, void *recvbuf, size_t count, - Datatype datatype, Comm::Op op, - const std::string &hint) const +void CommImplDummy::Allreduce(const void *sendbuf, void *recvbuf, size_t count, Datatype datatype, + Comm::Op op, const std::string &hint) const { CommImplDummy::Reduce(sendbuf, recvbuf, count, datatype, op, 0, hint); } -void CommImplDummy::Bcast(void *, size_t, Datatype, int, - const std::string &) const -{ -} +void CommImplDummy::Bcast(void *, size_t, Datatype, int, const std::string &) const {} -void CommImplDummy::Gather(const void *sendbuf, size_t sendcount, - Datatype sendtype, void *recvbuf, size_t recvcount, - Datatype recvtype, int root, - const std::string &) const +void CommImplDummy::Gather(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + size_t recvcount, Datatype recvtype, int root, const std::string &) const { if (sendcount > 0 && !sendbuf) { @@ -230,24 +209,20 @@ void CommImplDummy::Gather(const void *sendbuf, size_t sendcount, std::memcpy(recvbuf, sendbuf, nsent); } -void CommImplDummy::Gatherv(const void *sendbuf, size_t sendcount, - Datatype sendtype, void *recvbuf, - const size_t *recvcounts, const size_t *displs, - Datatype recvtype, int root, - const std::string &hint) const +void CommImplDummy::Gatherv(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + const size_t *recvcounts, const size_t *displs, Datatype recvtype, + int root, const std::string &hint) const { const size_t recvcount = recvcounts[0]; if (recvcount != sendcount) { return CommDummyError("send and recv counts differ"); } - CommImplDummy::Gather(sendbuf, sendcount, sendtype, recvbuf, recvcount, - recvtype, root, hint); + CommImplDummy::Gather(sendbuf, sendcount, sendtype, recvbuf, recvcount, recvtype, root, hint); } -void CommImplDummy::Reduce(const void *sendbuf, void *recvbuf, size_t count, - Datatype datatype, Comm::Op, int, - const std::string &) const +void CommImplDummy::Reduce(const void *sendbuf, void *recvbuf, size_t count, Datatype datatype, + Comm::Op, int, const std::string &) const { std::memcpy(recvbuf, sendbuf, count * CommImpl::SizeOf(datatype)); } @@ -257,21 +232,16 @@ void CommImplDummy::ReduceInPlace(void *, size_t, Datatype, Comm::Op, int, { } -void CommImplDummy::Send(const void *, size_t, Datatype, int, int, - const std::string &) const -{ -} +void CommImplDummy::Send(const void *, size_t, Datatype, int, int, const std::string &) const {} -Comm::Status CommImplDummy::Recv(void *, size_t, Datatype, int, int, - const std::string &) const +Comm::Status CommImplDummy::Recv(void *, size_t, Datatype, int, int, const std::string &) const { Comm::Status status; return status; } -void CommImplDummy::Scatter(const void *sendbuf, size_t sendcount, - Datatype sendtype, void *recvbuf, size_t recvcount, - Datatype recvtype, int root, +void CommImplDummy::Scatter(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + size_t recvcount, Datatype recvtype, int root, const std::string &) const { if (sendcount > 0 && !sendbuf) @@ -298,22 +268,19 @@ void CommImplDummy::Scatter(const void *sendbuf, size_t sendcount, std::memcpy(recvbuf, sendbuf, nsent); } -Comm::Req CommImplDummy::Isend(const void *, size_t, Datatype, int, int, - const std::string &) const +Comm::Req CommImplDummy::Isend(const void *, size_t, Datatype, int, int, const std::string &) const { auto req = std::unique_ptr(new CommReqImplDummy()); return MakeReq(std::move(req)); } -Comm::Req CommImplDummy::Irecv(void *, size_t, Datatype, int, int, - const std::string &) const +Comm::Req CommImplDummy::Irecv(void *, size_t, Datatype, int, int, const std::string &) const { auto req = std::unique_ptr(new CommReqImplDummy()); return MakeReq(std::move(req)); } -Comm::Win CommImplDummy::Win_allocate_shared(size_t size, int disp_unit, - void *baseptr, +Comm::Win CommImplDummy::Win_allocate_shared(size_t size, int disp_unit, void *baseptr, const std::string &) const { auto win = std::unique_ptr(new CommWinImplDummy()); @@ -321,9 +288,8 @@ Comm::Win CommImplDummy::Win_allocate_shared(size_t size, int disp_unit, return MakeWin(std::move(win)); } -int CommImplDummy::Win_shared_query(Comm::Win &win, int rank, size_t *size, - int *disp_unit, void *baseptr, - const std::string &) const +int CommImplDummy::Win_shared_query(Comm::Win &win, int rank, size_t *size, int *disp_unit, + void *baseptr, const std::string &) const { *size = 0; *disp_unit = 1; @@ -337,26 +303,15 @@ int CommImplDummy::Win_free(Comm::Win &win, const std::string &) const return 0; } -int CommImplDummy::Win_lock(Comm::LockType lock_type, int rank, int assert, - Comm::Win &win, const std::string &) const -{ - return 0; -} -int CommImplDummy::Win_unlock(int rank, Comm::Win &win, - const std::string &) const +int CommImplDummy::Win_lock(Comm::LockType lock_type, int rank, int assert, Comm::Win &win, + const std::string &) const { return 0; } +int CommImplDummy::Win_unlock(int rank, Comm::Win &win, const std::string &) const { return 0; } -int CommImplDummy::Win_lock_all(int assert, Comm::Win &win, - const std::string &) const -{ - return 0; -} -int CommImplDummy::Win_unlock_all(Comm::Win &win, const std::string &) const -{ - return 0; -} +int CommImplDummy::Win_lock_all(int assert, Comm::Win &win, const std::string &) const { return 0; } +int CommImplDummy::Win_unlock_all(Comm::Win &win, const std::string &) const { return 0; } Comm::Status CommReqImplDummy::Wait(const std::string &hint) { diff --git a/source/adios2/helper/adiosCommMPI.cpp b/source/adios2/helper/adiosCommMPI.cpp index 4da90642e7..bf1f309b8b 100644 --- a/source/adios2/helper/adiosCommMPI.cpp +++ b/source/adios2/helper/adiosCommMPI.cpp @@ -37,9 +37,8 @@ struct InitMPI }; const MPI_Op OpToMPI[] = { - MPI_OP_NULL, MPI_MAX, MPI_MIN, MPI_SUM, MPI_PROD, - MPI_LAND, MPI_BAND, MPI_LOR, MPI_BOR, MPI_LXOR, - MPI_BXOR, MPI_MAXLOC, MPI_MINLOC, MPI_REPLACE, MPI_NO_OP, + MPI_OP_NULL, MPI_MAX, MPI_MIN, MPI_SUM, MPI_PROD, MPI_LAND, MPI_BAND, MPI_LOR, + MPI_BOR, MPI_LXOR, MPI_BXOR, MPI_MAXLOC, MPI_MINLOC, MPI_REPLACE, MPI_NO_OP, }; MPI_Op ToMPI(Comm::Op op) { return OpToMPI[int(op)]; } @@ -92,8 +91,7 @@ void CheckMPIReturn(const int value, const std::string &hint) error = "MPI_ERR number: " + std::to_string(value); } - helper::Throw("Helper", "AdiosCommMPI", - "CheckMPIReturn", + helper::Throw("Helper", "AdiosCommMPI", "CheckMPIReturn", "ADIOS2 detected " + error + ", " + hint); } } @@ -140,76 +138,67 @@ class CommImplMPI : public CommImpl void Free(const std::string &hint) override; std::unique_ptr Duplicate(const std::string &hint) const override; - std::unique_ptr Split(int color, int key, - const std::string &hint) const override; + std::unique_ptr Split(int color, int key, const std::string &hint) const override; std::unique_ptr World(const std::string &hint) const override; - virtual std::unique_ptr - GroupByShm(const std::string &hint) const override; + virtual std::unique_ptr GroupByShm(const std::string &hint) const override; int Rank() const override; int Size() const override; bool IsMPI() const override; void Barrier(const std::string &hint) const override; - void Allgather(const void *sendbuf, size_t sendcount, Datatype sendtype, - void *recvbuf, size_t recvcount, Datatype recvtype, - const std::string &hint) const override; + void Allgather(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + size_t recvcount, Datatype recvtype, const std::string &hint) const override; - void Allgatherv(const void *sendbuf, size_t sendcount, Datatype sendtype, - void *recvbuf, const size_t *recvcounts, - const size_t *displs, Datatype recvtype, + void Allgatherv(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + const size_t *recvcounts, const size_t *displs, Datatype recvtype, const std::string &hint) const override; - void Allreduce(const void *sendbuf, void *recvbuf, size_t count, - Datatype datatype, Comm::Op op, + void Allreduce(const void *sendbuf, void *recvbuf, size_t count, Datatype datatype, Comm::Op op, const std::string &hint) const override; void Bcast(void *buffer, size_t count, Datatype datatype, int root, const std::string &hint) const override; - void Gather(const void *sendbuf, size_t sendcount, Datatype sendtype, - void *recvbuf, size_t recvcount, Datatype recvtype, int root, + void Gather(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + size_t recvcount, Datatype recvtype, int root, const std::string &hint) const override; - void Gatherv(const void *sendbuf, size_t sendcount, Datatype sendtype, - void *recvbuf, const size_t *recvcounts, const size_t *displs, - Datatype recvtype, int root, + void Gatherv(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + const size_t *recvcounts, const size_t *displs, Datatype recvtype, int root, const std::string &hint) const override; - void Reduce(const void *sendbuf, void *recvbuf, size_t count, - Datatype datatype, Comm::Op op, int root, - const std::string &hint) const override; + void Reduce(const void *sendbuf, void *recvbuf, size_t count, Datatype datatype, Comm::Op op, + int root, const std::string &hint) const override; - void ReduceInPlace(void *buf, size_t count, Datatype datatype, Comm::Op op, - int root, const std::string &hint) const override; + void ReduceInPlace(void *buf, size_t count, Datatype datatype, Comm::Op op, int root, + const std::string &hint) const override; - void Send(const void *buf, size_t count, Datatype datatype, int dest, - int tag, const std::string &hint) const override; + void Send(const void *buf, size_t count, Datatype datatype, int dest, int tag, + const std::string &hint) const override; - Comm::Status Recv(void *buf, size_t count, Datatype datatype, int source, - int tag, const std::string &hint) const override; + Comm::Status Recv(void *buf, size_t count, Datatype datatype, int source, int tag, + const std::string &hint) const override; - void Scatter(const void *sendbuf, size_t sendcount, Datatype sendtype, - void *recvbuf, size_t recvcount, Datatype recvtype, int root, + void Scatter(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + size_t recvcount, Datatype recvtype, int root, const std::string &hint) const override; - Comm::Req Isend(const void *buffer, size_t count, Datatype datatype, - int dest, int tag, const std::string &hint) const override; + Comm::Req Isend(const void *buffer, size_t count, Datatype datatype, int dest, int tag, + const std::string &hint) const override; - Comm::Req Irecv(void *buffer, size_t count, Datatype datatype, int source, - int tag, const std::string &hint) const override; + Comm::Req Irecv(void *buffer, size_t count, Datatype datatype, int source, int tag, + const std::string &hint) const override; Comm::Win Win_allocate_shared(size_t size, int disp_unit, void *baseptr, const std::string &hint) const override; - int Win_shared_query(Comm::Win &win, int rank, size_t *size, int *disp_unit, - void *baseptr, const std::string &hint) const override; + int Win_shared_query(Comm::Win &win, int rank, size_t *size, int *disp_unit, void *baseptr, + const std::string &hint) const override; int Win_free(Comm::Win &win, const std::string &hint) const override; int Win_lock(Comm::LockType lock_type, int rank, int assert, Comm::Win &win, const std::string &hint) const override; - int Win_unlock(int rank, Comm::Win &win, - const std::string &hint) const override; - int Win_lock_all(int assert, Comm::Win &win, - const std::string &hint) const override; + int Win_unlock(int rank, Comm::Win &win, const std::string &hint) const override; + int Win_lock_all(int assert, Comm::Win &win, const std::string &hint) const override; int Win_unlock_all(Comm::Win &win, const std::string &hint) const override; }; @@ -221,8 +210,7 @@ CommImplMPI::~CommImplMPI() MPI_Finalized(&flag); if (!flag) { - if (m_MPIComm != MPI_COMM_NULL && m_MPIComm != MPI_COMM_WORLD && - m_MPIComm != MPI_COMM_SELF) + if (m_MPIComm != MPI_COMM_NULL && m_MPIComm != MPI_COMM_WORLD && m_MPIComm != MPI_COMM_SELF) { MPI_Comm_free(&m_MPIComm); } @@ -231,8 +219,7 @@ CommImplMPI::~CommImplMPI() void CommImplMPI::Free(const std::string &hint) { - if (m_MPIComm != MPI_COMM_NULL && m_MPIComm != MPI_COMM_WORLD && - m_MPIComm != MPI_COMM_SELF) + if (m_MPIComm != MPI_COMM_NULL && m_MPIComm != MPI_COMM_WORLD && m_MPIComm != MPI_COMM_SELF) { MPI_Comm mpiComm = m_MPIComm; m_MPIComm = MPI_COMM_NULL; // prevent freeing a second time @@ -247,8 +234,7 @@ std::unique_ptr CommImplMPI::Duplicate(const std::string &hint) const return std::unique_ptr(new CommImplMPI(newComm)); } -std::unique_ptr CommImplMPI::Split(int color, int key, - const std::string &hint) const +std::unique_ptr CommImplMPI::Split(int color, int key, const std::string &hint) const { MPI_Comm newComm; CheckMPIReturn(MPI_Comm_split(m_MPIComm, color, key, &newComm), hint); @@ -265,9 +251,7 @@ std::unique_ptr CommImplMPI::GroupByShm(const std::string &hint) const MPI_Comm nodeComm; MPI_Info info; MPI_Info_create(&info); - CheckMPIReturn(MPI_Comm_split_type(m_MPIComm, MPI_COMM_TYPE_SHARED, 0, info, - &nodeComm), - hint); + CheckMPIReturn(MPI_Comm_split_type(m_MPIComm, MPI_COMM_TYPE_SHARED, 0, info, &nodeComm), hint); return std::unique_ptr(new CommImplMPI(nodeComm)); } @@ -292,20 +276,16 @@ void CommImplMPI::Barrier(const std::string &hint) const CheckMPIReturn(MPI_Barrier(m_MPIComm), hint); } -void CommImplMPI::Allgather(const void *sendbuf, size_t sendcount, - Datatype sendtype, void *recvbuf, size_t recvcount, - Datatype recvtype, const std::string &hint) const +void CommImplMPI::Allgather(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + size_t recvcount, Datatype recvtype, const std::string &hint) const { - CheckMPIReturn(MPI_Allgather(sendbuf, static_cast(sendcount), - ToMPI(sendtype), recvbuf, - static_cast(recvcount), ToMPI(recvtype), - m_MPIComm), + CheckMPIReturn(MPI_Allgather(sendbuf, static_cast(sendcount), ToMPI(sendtype), recvbuf, + static_cast(recvcount), ToMPI(recvtype), m_MPIComm), hint); } -void CommImplMPI::Allgatherv(const void *sendbuf, size_t sendcount, - Datatype sendtype, void *recvbuf, - const size_t *recvcounts, const size_t *displs, +void CommImplMPI::Allgatherv(const void *sendbuf, size_t sendcount, Datatype sendtype, + void *recvbuf, const size_t *recvcounts, const size_t *displs, Datatype recvtype, const std::string &hint) const { std::vector countsInt; @@ -314,24 +294,20 @@ void CommImplMPI::Allgatherv(const void *sendbuf, size_t sendcount, auto cast = [](size_t sz) -> int { return int(sz); }; const int size = this->Size(); countsInt.reserve(size); - std::transform(recvcounts, recvcounts + size, - std::back_inserter(countsInt), cast); + std::transform(recvcounts, recvcounts + size, std::back_inserter(countsInt), cast); displsInt.reserve(size); - std::transform(displs, displs + size, std::back_inserter(displsInt), - cast); + std::transform(displs, displs + size, std::back_inserter(displsInt), cast); } - CheckMPIReturn(MPI_Allgatherv(sendbuf, static_cast(sendcount), - ToMPI(sendtype), recvbuf, countsInt.data(), - displsInt.data(), ToMPI(recvtype), m_MPIComm), + CheckMPIReturn(MPI_Allgatherv(sendbuf, static_cast(sendcount), ToMPI(sendtype), recvbuf, + countsInt.data(), displsInt.data(), ToMPI(recvtype), m_MPIComm), hint); } -void CommImplMPI::Allreduce(const void *sendbuf, void *recvbuf, size_t count, - Datatype datatype, Comm::Op op, - const std::string &hint) const +void CommImplMPI::Allreduce(const void *sendbuf, void *recvbuf, size_t count, Datatype datatype, + Comm::Op op, const std::string &hint) const { - CheckMPIReturn(MPI_Allreduce(sendbuf, recvbuf, static_cast(count), - ToMPI(datatype), ToMPI(op), m_MPIComm), + CheckMPIReturn(MPI_Allreduce(sendbuf, recvbuf, static_cast(count), ToMPI(datatype), + ToMPI(op), m_MPIComm), hint); } @@ -344,32 +320,27 @@ void CommImplMPI::Bcast(void *buffer, size_t count, Datatype datatype, int root, unsigned char *blockBuf = static_cast(buffer); while (inputSize > 0) { - CheckMPIReturn(MPI_Bcast(blockBuf, static_cast(blockSize), - ToMPI(datatype), root, m_MPIComm), - hint); + CheckMPIReturn( + MPI_Bcast(blockBuf, static_cast(blockSize), ToMPI(datatype), root, m_MPIComm), + hint); blockBuf += blockSize * CommImpl::SizeOf(datatype); inputSize -= blockSize; blockSize = (inputSize > MAXBCASTSIZE ? MAXBCASTSIZE : inputSize); } } -void CommImplMPI::Gather(const void *sendbuf, size_t sendcount, - Datatype sendtype, void *recvbuf, size_t recvcount, - Datatype recvtype, int root, +void CommImplMPI::Gather(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + size_t recvcount, Datatype recvtype, int root, const std::string &hint) const { - CheckMPIReturn(MPI_Gather(sendbuf, static_cast(sendcount), - ToMPI(sendtype), recvbuf, - static_cast(recvcount), ToMPI(recvtype), - root, m_MPIComm), + CheckMPIReturn(MPI_Gather(sendbuf, static_cast(sendcount), ToMPI(sendtype), recvbuf, + static_cast(recvcount), ToMPI(recvtype), root, m_MPIComm), hint); } -void CommImplMPI::Gatherv(const void *sendbuf, size_t sendcount, - Datatype sendtype, void *recvbuf, - const size_t *recvcounts, const size_t *displs, - Datatype recvtype, int root, - const std::string &hint) const +void CommImplMPI::Gatherv(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + const size_t *recvcounts, const size_t *displs, Datatype recvtype, + int root, const std::string &hint) const { std::vector countsInt; std::vector displsInt; @@ -378,84 +349,71 @@ void CommImplMPI::Gatherv(const void *sendbuf, size_t sendcount, auto cast = [](size_t sz) -> int { return int(sz); }; const int size = this->Size(); countsInt.reserve(size); - std::transform(recvcounts, recvcounts + size, - std::back_inserter(countsInt), cast); + std::transform(recvcounts, recvcounts + size, std::back_inserter(countsInt), cast); displsInt.reserve(size); - std::transform(displs, displs + size, std::back_inserter(displsInt), - cast); + std::transform(displs, displs + size, std::back_inserter(displsInt), cast); } - CheckMPIReturn(MPI_Gatherv(sendbuf, static_cast(sendcount), - ToMPI(sendtype), recvbuf, countsInt.data(), - displsInt.data(), ToMPI(recvtype), root, + CheckMPIReturn(MPI_Gatherv(sendbuf, static_cast(sendcount), ToMPI(sendtype), recvbuf, + countsInt.data(), displsInt.data(), ToMPI(recvtype), root, m_MPIComm), hint); } -void CommImplMPI::Reduce(const void *sendbuf, void *recvbuf, size_t count, - Datatype datatype, Comm::Op op, int root, - const std::string &hint) const +void CommImplMPI::Reduce(const void *sendbuf, void *recvbuf, size_t count, Datatype datatype, + Comm::Op op, int root, const std::string &hint) const { - CheckMPIReturn(MPI_Reduce(sendbuf, recvbuf, static_cast(count), - ToMPI(datatype), ToMPI(op), root, m_MPIComm), + CheckMPIReturn(MPI_Reduce(sendbuf, recvbuf, static_cast(count), ToMPI(datatype), ToMPI(op), + root, m_MPIComm), hint); } -void CommImplMPI::ReduceInPlace(void *buf, size_t count, Datatype datatype, - Comm::Op op, int root, +void CommImplMPI::ReduceInPlace(void *buf, size_t count, Datatype datatype, Comm::Op op, int root, const std::string &hint) const { - CheckMPIReturn(MPI_Reduce(MPI_IN_PLACE, buf, static_cast(count), - ToMPI(datatype), ToMPI(op), root, m_MPIComm), + CheckMPIReturn(MPI_Reduce(MPI_IN_PLACE, buf, static_cast(count), ToMPI(datatype), + ToMPI(op), root, m_MPIComm), hint); } -void CommImplMPI::Send(const void *buf, size_t count, Datatype datatype, - int dest, int tag, const std::string &hint) const +void CommImplMPI::Send(const void *buf, size_t count, Datatype datatype, int dest, int tag, + const std::string &hint) const { - CheckMPIReturn(MPI_Send(buf, static_cast(count), ToMPI(datatype), dest, - tag, m_MPIComm), + CheckMPIReturn(MPI_Send(buf, static_cast(count), ToMPI(datatype), dest, tag, m_MPIComm), hint); } -Comm::Status CommImplMPI::Recv(void *buf, size_t count, Datatype datatype, - int source, int tag, +Comm::Status CommImplMPI::Recv(void *buf, size_t count, Datatype datatype, int source, int tag, const std::string &hint) const { MPI_Status mpiStatus; - CheckMPIReturn(MPI_Recv(buf, static_cast(count), ToMPI(datatype), - source, tag, m_MPIComm, &mpiStatus), - hint); + CheckMPIReturn( + MPI_Recv(buf, static_cast(count), ToMPI(datatype), source, tag, m_MPIComm, &mpiStatus), + hint); Comm::Status status; status.Source = mpiStatus.MPI_SOURCE; status.Tag = mpiStatus.MPI_TAG; { int mpiCount = 0; - CheckMPIReturn(MPI_Get_count(&mpiStatus, ToMPI(datatype), &mpiCount), - hint); + CheckMPIReturn(MPI_Get_count(&mpiStatus, ToMPI(datatype), &mpiCount), hint); status.Count = mpiCount; } return status; } -void CommImplMPI::Scatter(const void *sendbuf, size_t sendcount, - Datatype sendtype, void *recvbuf, size_t recvcount, - Datatype recvtype, int root, +void CommImplMPI::Scatter(const void *sendbuf, size_t sendcount, Datatype sendtype, void *recvbuf, + size_t recvcount, Datatype recvtype, int root, const std::string &hint) const { - CheckMPIReturn(MPI_Scatter(sendbuf, static_cast(sendcount), - ToMPI(sendtype), recvbuf, - static_cast(recvcount), ToMPI(recvtype), - root, m_MPIComm), + CheckMPIReturn(MPI_Scatter(sendbuf, static_cast(sendcount), ToMPI(sendtype), recvbuf, + static_cast(recvcount), ToMPI(recvtype), root, m_MPIComm), hint); } -Comm::Req CommImplMPI::Isend(const void *buffer, size_t count, - Datatype datatype, int dest, int tag, +Comm::Req CommImplMPI::Isend(const void *buffer, size_t count, Datatype datatype, int dest, int tag, const std::string &hint) const { - auto req = - std::unique_ptr(new CommReqImplMPI(ToMPI(datatype))); + auto req = std::unique_ptr(new CommReqImplMPI(ToMPI(datatype))); if (count > DefaultMaxFileBatchSize) { @@ -466,12 +424,9 @@ Comm::Req CommImplMPI::Isend(const void *buffer, size_t count, { int batchSize = static_cast(DefaultMaxFileBatchSize); MPI_Request mpiReq; - CheckMPIReturn( - MPI_Isend( - static_cast(const_cast(buffer)) + position, - batchSize, ToMPI(datatype), dest, tag, m_MPIComm, &mpiReq), - "in call to Isend batch " + std::to_string(b) + " " + hint + - "\n"); + CheckMPIReturn(MPI_Isend(static_cast(const_cast(buffer)) + position, + batchSize, ToMPI(datatype), dest, tag, m_MPIComm, &mpiReq), + "in call to Isend batch " + std::to_string(b) + " " + hint + "\n"); req->m_MPIReqs.emplace_back(mpiReq); position += DefaultMaxFileBatchSize; @@ -481,11 +436,9 @@ Comm::Req CommImplMPI::Isend(const void *buffer, size_t count, { int batchSize = static_cast(remainder); MPI_Request mpiReq; - CheckMPIReturn( - MPI_Isend( - static_cast(const_cast(buffer)) + position, - batchSize, ToMPI(datatype), dest, tag, m_MPIComm, &mpiReq), - "in call to Isend remainder batch " + hint + "\n"); + CheckMPIReturn(MPI_Isend(static_cast(const_cast(buffer)) + position, + batchSize, ToMPI(datatype), dest, tag, m_MPIComm, &mpiReq), + "in call to Isend remainder batch " + hint + "\n"); req->m_MPIReqs.emplace_back(mpiReq); } } @@ -493,22 +446,19 @@ Comm::Req CommImplMPI::Isend(const void *buffer, size_t count, { int batchSize = static_cast(count); MPI_Request mpiReq; - CheckMPIReturn( - MPI_Isend(static_cast(const_cast(buffer)), - batchSize, ToMPI(datatype), dest, tag, m_MPIComm, - &mpiReq), - " in call to Isend with single batch " + hint + "\n"); + CheckMPIReturn(MPI_Isend(static_cast(const_cast(buffer)), batchSize, + ToMPI(datatype), dest, tag, m_MPIComm, &mpiReq), + " in call to Isend with single batch " + hint + "\n"); req->m_MPIReqs.emplace_back(mpiReq); } return MakeReq(std::move(req)); } -Comm::Req CommImplMPI::Irecv(void *buffer, size_t count, Datatype datatype, - int source, int tag, const std::string &hint) const +Comm::Req CommImplMPI::Irecv(void *buffer, size_t count, Datatype datatype, int source, int tag, + const std::string &hint) const { - auto req = - std::unique_ptr(new CommReqImplMPI(ToMPI(datatype))); + auto req = std::unique_ptr(new CommReqImplMPI(ToMPI(datatype))); if (count > DefaultMaxFileBatchSize) { @@ -518,11 +468,9 @@ Comm::Req CommImplMPI::Irecv(void *buffer, size_t count, Datatype datatype, { int batchSize = static_cast(DefaultMaxFileBatchSize); MPI_Request mpiReq; - CheckMPIReturn(MPI_Irecv(static_cast(buffer) + position, - batchSize, ToMPI(datatype), source, tag, - m_MPIComm, &mpiReq), - "in call to Irecv batch " + std::to_string(b) + " " + - hint + "\n"); + CheckMPIReturn(MPI_Irecv(static_cast(buffer) + position, batchSize, + ToMPI(datatype), source, tag, m_MPIComm, &mpiReq), + "in call to Irecv batch " + std::to_string(b) + " " + hint + "\n"); req->m_MPIReqs.emplace_back(mpiReq); position += DefaultMaxFileBatchSize; @@ -533,9 +481,8 @@ Comm::Req CommImplMPI::Irecv(void *buffer, size_t count, Datatype datatype, { int batchSize = static_cast(remainder); MPI_Request mpiReq; - CheckMPIReturn(MPI_Irecv(static_cast(buffer) + position, - batchSize, ToMPI(datatype), source, tag, - m_MPIComm, &mpiReq), + CheckMPIReturn(MPI_Irecv(static_cast(buffer) + position, batchSize, + ToMPI(datatype), source, tag, m_MPIComm, &mpiReq), "in call to Irecv remainder batch " + hint + "\n"); req->m_MPIReqs.emplace_back(mpiReq); } @@ -544,30 +491,28 @@ Comm::Req CommImplMPI::Irecv(void *buffer, size_t count, Datatype datatype, { int batchSize = static_cast(count); MPI_Request mpiReq; - CheckMPIReturn(MPI_Irecv(buffer, batchSize, ToMPI(datatype), source, - tag, m_MPIComm, &mpiReq), - " in call to Isend with single batch " + hint + "\n"); + CheckMPIReturn( + MPI_Irecv(buffer, batchSize, ToMPI(datatype), source, tag, m_MPIComm, &mpiReq), + " in call to Isend with single batch " + hint + "\n"); req->m_MPIReqs.emplace_back(mpiReq); } return MakeReq(std::move(req)); } -Comm::Win CommImplMPI::Win_allocate_shared(size_t size, int disp_unit, - void *baseptr, +Comm::Win CommImplMPI::Win_allocate_shared(size_t size, int disp_unit, void *baseptr, const std::string &hint) const { auto w = std::unique_ptr(new CommWinImplMPI()); MPI_Aint asize = static_cast(size); - CheckMPIReturn(MPI_Win_allocate_shared(asize, disp_unit, MPI_INFO_NULL, - m_MPIComm, baseptr, &w->m_Win), - "in call to Win_allocate_shared " + hint + "\n"); + CheckMPIReturn( + MPI_Win_allocate_shared(asize, disp_unit, MPI_INFO_NULL, m_MPIComm, baseptr, &w->m_Win), + "in call to Win_allocate_shared " + hint + "\n"); return MakeWin(std::move(w)); } -int CommImplMPI::Win_shared_query(Comm::Win &win, int rank, size_t *size, - int *disp_unit, void *baseptr, - const std::string &hint) const +int CommImplMPI::Win_shared_query(Comm::Win &win, int rank, size_t *size, int *disp_unit, + void *baseptr, const std::string &hint) const { CommWinImplMPI *w = dynamic_cast(CommWinImpl::Get(win)); MPI_Aint asize; @@ -585,8 +530,8 @@ int CommImplMPI::Win_free(Comm::Win &win, const std::string &hint) const return ret; } -int CommImplMPI::Win_lock(Comm::LockType lock_type, int rank, int assert, - Comm::Win &win, const std::string &hint) const +int CommImplMPI::Win_lock(Comm::LockType lock_type, int rank, int assert, Comm::Win &win, + const std::string &hint) const { CommWinImplMPI *w = dynamic_cast(CommWinImpl::Get(win)); int mpi_lock_type = ToMPI(lock_type); @@ -594,8 +539,7 @@ int CommImplMPI::Win_lock(Comm::LockType lock_type, int rank, int assert, CheckMPIReturn(ret, "in call to Win_Lock " + hint + "\n"); return ret; } -int CommImplMPI::Win_unlock(int rank, Comm::Win &win, - const std::string &hint) const +int CommImplMPI::Win_unlock(int rank, Comm::Win &win, const std::string &hint) const { CommWinImplMPI *w = dynamic_cast(CommWinImpl::Get(win)); int ret = MPI_Win_unlock(rank, w->m_Win); @@ -603,8 +547,7 @@ int CommImplMPI::Win_unlock(int rank, Comm::Win &win, return ret; } -int CommImplMPI::Win_lock_all(int assert, Comm::Win &win, - const std::string &hint) const +int CommImplMPI::Win_lock_all(int assert, Comm::Win &win, const std::string &hint) const { CommWinImplMPI *w = dynamic_cast(CommWinImpl::Get(win)); int ret = MPI_Win_lock_all(assert, w->m_Win); @@ -632,8 +575,8 @@ Comm::Status CommReqImplMPI::Wait(const std::string &hint) if (mpiRequests.size() > 1) { - int mpiReturn = MPI_Waitall(static_cast(mpiRequests.size()), - mpiRequests.data(), mpiStatuses.data()); + int mpiReturn = MPI_Waitall(static_cast(mpiRequests.size()), mpiRequests.data(), + mpiStatuses.data()); if (mpiReturn == MPI_ERR_IN_STATUS) { for (auto &mpiStatus : mpiStatuses) @@ -660,8 +603,7 @@ Comm::Status CommReqImplMPI::Wait(const std::string &hint) for (auto &mpiStatus : mpiStatuses) { int mpiCount = 0; - CheckMPIReturn(MPI_Get_count(&mpiStatus, m_MPIDatatype, &mpiCount), - hint); + CheckMPIReturn(MPI_Get_count(&mpiStatus, m_MPIDatatype, &mpiCount), hint); status.Count += mpiCount; } @@ -680,10 +622,7 @@ Comm::Status CommReqImplMPI::Wait(const std::string &hint) return status; } -int CommWinImplMPI::Free(const std::string &hint) -{ - return MPI_Win_free(&m_Win); -} +int CommWinImplMPI::Free(const std::string &hint) { return MPI_Win_free(&m_Win); } Comm CommWithMPI(MPI_Comm mpiComm) { diff --git a/source/adios2/helper/adiosDynamicBinder.cpp b/source/adios2/helper/adiosDynamicBinder.cpp index bc500b0122..34e068bf1a 100644 --- a/source/adios2/helper/adiosDynamicBinder.cpp +++ b/source/adios2/helper/adiosDynamicBinder.cpp @@ -31,12 +31,9 @@ struct DynamicBinder::Impl adios2sys::DynamicLoader::LibraryHandle m_LibraryHandle; }; -DynamicBinder::DynamicBinder(std::string libName) : DynamicBinder(libName, "") -{ -} +DynamicBinder::DynamicBinder(std::string libName) : DynamicBinder(libName, "") {} -DynamicBinder::DynamicBinder(std::string libName, std::string libPath) -: m_Impl(new Impl) +DynamicBinder::DynamicBinder(std::string libName, std::string libPath) : m_Impl(new Impl) { std::vector libPrefixes; libPrefixes.emplace_back(""); @@ -75,15 +72,13 @@ DynamicBinder::DynamicBinder(std::string libName, std::string libPath) // Slashes in fileName is correct for unix-like systems // ConvertToOutputPath() will change slashes if we're running on // a Windows system - fileName = - adios2sys::SystemTools::ConvertToOutputPath(fileName); + fileName = adios2sys::SystemTools::ConvertToOutputPath(fileName); } else { fileName = prefix + libName + suffix; } - m_Impl->m_LibraryHandle = - adios2sys::DynamicLoader::OpenLibrary(fileName); + m_Impl->m_LibraryHandle = adios2sys::DynamicLoader::OpenLibrary(fileName); searchedLibs.push_back(fileName); if (m_Impl->m_LibraryHandle) { @@ -98,26 +93,20 @@ DynamicBinder::DynamicBinder(std::string libName, std::string libPath) if (!m_Impl->m_LibraryHandle) { std::stringstream errString; - errString << "Unable to locate the " << libName - << " library; searched for "; + errString << "Unable to locate the " << libName << " library; searched for "; std::copy(searchedLibs.begin(), searchedLibs.end(), std::ostream_iterator(errString, " ")); - helper::Throw("Helper", "adiosDynamicBinder", - "DynamicBinder", errString.str()); + helper::Throw("Helper", "adiosDynamicBinder", "DynamicBinder", + errString.str()); } } -DynamicBinder::~DynamicBinder() -{ - adios2sys::DynamicLoader::CloseLibrary(m_Impl->m_LibraryHandle); -} +DynamicBinder::~DynamicBinder() { adios2sys::DynamicLoader::CloseLibrary(m_Impl->m_LibraryHandle); } -DynamicBinder::VoidSymbolPointer -DynamicBinder::GetSymbol(std::string symbolName) +DynamicBinder::VoidSymbolPointer DynamicBinder::GetSymbol(std::string symbolName) { - return adios2sys::DynamicLoader::GetSymbolAddress(m_Impl->m_LibraryHandle, - symbolName); + return adios2sys::DynamicLoader::GetSymbolAddress(m_Impl->m_LibraryHandle, symbolName); } } // end namespace helper diff --git a/source/adios2/helper/adiosFunctions.h b/source/adios2/helper/adiosFunctions.h index 0495f7d234..dd1d14447d 100644 --- a/source/adios2/helper/adiosFunctions.h +++ b/source/adios2/helper/adiosFunctions.h @@ -18,9 +18,9 @@ #include "adios2/helper/adiosMemory.h" //memcpy, std::copy, insert, resize #include "adios2/helper/adiosNetwork.h" //network and staging functions #include "adios2/helper/adiosString.h" //std::string manipulation -#include "adios2/helper/adiosSystem.h" //OS functionality, POSIX, filesystem -#include "adios2/helper/adiosType.h" //Type casting, conversion, checks, etc. -#include "adios2/helper/adiosXML.h" //XML parsing -#include "adios2/helper/adiosYAML.h" //YAML parsing +#include "adios2/helper/adiosSystem.h" //OS functionality, POSIX, filesystem +#include "adios2/helper/adiosType.h" //Type casting, conversion, checks, etc. +#include "adios2/helper/adiosXML.h" //XML parsing +#include "adios2/helper/adiosYAML.h" //YAML parsing #endif /* ADIOS2_HELPER_ADIOSFUNCTIONS_H_ */ diff --git a/source/adios2/helper/adiosLog.cpp b/source/adios2/helper/adiosLog.cpp index 927094274e..18628a6831 100644 --- a/source/adios2/helper/adiosLog.cpp +++ b/source/adios2/helper/adiosLog.cpp @@ -30,13 +30,12 @@ std::string defaultColor = "\033[0m"; std::unordered_set messages; std::string MakeMessage(const std::string &component, const std::string &source, - const std::string &activity, const std::string &message, - const int commRank, const LogMode mode) + const std::string &activity, const std::string &message, const int commRank, + const LogMode mode) { std::stringstream m; - auto timeNow = - std::chrono::system_clock::to_time_t(std::chrono::system_clock::now()); + auto timeNow = std::chrono::system_clock::to_time_t(std::chrono::system_clock::now()); char buf[30]; struct tm now_tm; @@ -71,30 +70,26 @@ std::string MakeMessage(const std::string &component, const std::string &source, m << " [Rank " << commRank << "]"; } - m << " <" << component << "> <" << source << "> <" << activity - << "> : " << message << defaultColor << std::endl; + m << " <" << component << "> <" << source << "> <" << activity << "> : " << message + << defaultColor << std::endl; return m.str(); } -void Log(const std::string &component, const std::string &source, - const std::string &activity, const std::string &message, - const LogMode mode) +void Log(const std::string &component, const std::string &source, const std::string &activity, + const std::string &message, const LogMode mode) { Log(component, source, activity, message, -1, -1, 0, 0, mode); } -void Log(const std::string &component, const std::string &source, - const std::string &activity, const std::string &message, - const int priority, const int verbosity, const LogMode mode) +void Log(const std::string &component, const std::string &source, const std::string &activity, + const std::string &message, const int priority, const int verbosity, const LogMode mode) { - Log(component, source, activity, message, -1, -1, priority, verbosity, - mode); + Log(component, source, activity, message, -1, -1, priority, verbosity, mode); } -void Log(const std::string &component, const std::string &source, - const std::string &activity, const std::string &message, - const int logRank, const int commRank, const int priority, +void Log(const std::string &component, const std::string &source, const std::string &activity, + const std::string &message, const int logRank, const int commRank, const int priority, const int verbosity, const LogMode mode) { @@ -102,8 +97,7 @@ void Log(const std::string &component, const std::string &source, // 1. logRank does not meet commRank, or // 2. priority does not meet verbosity, or // 3. the error or warning has been already printed - if ((logRank >= 0 && commRank >= 0 && logRank != commRank) || - priority > verbosity || + if ((logRank >= 0 && commRank >= 0 && logRank != commRank) || priority > verbosity || (messages.find(message) != messages.end() && (mode == LogMode::FATALERROR || mode == LogMode::WARNING))) { diff --git a/source/adios2/helper/adiosLog.h b/source/adios2/helper/adiosLog.h index bac5847320..5c3f8117ba 100644 --- a/source/adios2/helper/adiosLog.h +++ b/source/adios2/helper/adiosLog.h @@ -27,8 +27,8 @@ enum LogMode : char }; std::string MakeMessage(const std::string &component, const std::string &source, - const std::string &activity, const std::string &message, - const int commRank, const LogMode mode); + const std::string &activity, const std::string &message, const int commRank, + const LogMode mode); /** * Print outputs, warnings, errors, and exceptions @@ -38,9 +38,8 @@ std::string MakeMessage(const std::string &component, const std::string &source, * @param message: text message * @param mode: INFO, WARNING or ERROR */ -void Log(const std::string &component, const std::string &source, - const std::string &activity, const std::string &message, - const LogMode mode); +void Log(const std::string &component, const std::string &source, const std::string &activity, + const std::string &message, const LogMode mode); /** * Print outputs, warnings, errors, and exceptions @@ -52,9 +51,8 @@ void Log(const std::string &component, const std::string &source, * @param verbosity: engine parameter for engine wide verbosity level * @param mode: INFO, WARNING or ERROR */ -void Log(const std::string &component, const std::string &source, - const std::string &activity, const std::string &message, - const int priority, const int verbosity, const LogMode mode); +void Log(const std::string &component, const std::string &source, const std::string &activity, + const std::string &message, const int priority, const int verbosity, const LogMode mode); /** * Print outputs, warnings, errors, and exceptions @@ -68,28 +66,23 @@ void Log(const std::string &component, const std::string &source, * @param verbosity: engine parameter for engine wide verbosity level * @param mode: INFO, WARNING or ERROR */ -void Log(const std::string &component, const std::string &source, - const std::string &activity, const std::string &message, - const int logRank, const int commRank, const int priority, +void Log(const std::string &component, const std::string &source, const std::string &activity, + const std::string &message, const int logRank, const int commRank, const int priority, const int verbosity, const LogMode mode); template -void Throw(const std::string &component, const std::string &source, - const std::string &activity, const std::string &message, - const int commRank = -1) +void Throw(const std::string &component, const std::string &source, const std::string &activity, + const std::string &message, const int commRank = -1) { - auto m = MakeMessage(component, source, activity, message, commRank, - LogMode::EXCEPTION); + auto m = MakeMessage(component, source, activity, message, commRank, LogMode::EXCEPTION); throw(T(m)); } template void ThrowNested(const std::string &component, const std::string &source, - const std::string &activity, const std::string &message, - const int commRank = -1) + const std::string &activity, const std::string &message, const int commRank = -1) { - auto m = MakeMessage(component, source, activity, message, commRank, - LogMode::EXCEPTION); + auto m = MakeMessage(component, source, activity, message, commRank, LogMode::EXCEPTION); throw_with_nested(T(m)); } diff --git a/source/adios2/helper/adiosMath.cpp b/source/adios2/helper/adiosMath.cpp index f7dcbd8e09..bcf73b6a0e 100644 --- a/source/adios2/helper/adiosMath.cpp +++ b/source/adios2/helper/adiosMath.cpp @@ -28,9 +28,8 @@ namespace helper { #ifdef ADIOS2_HAVE_GPU_SUPPORT -#define declare_type(T) \ - template void GetGPUMinMax(const T *values, const size_t size, T &min, \ - T &max); +#define declare_type(T) \ + template void GetGPUMinMax(const T *values, const size_t size, T &min, T &max); ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type @@ -48,8 +47,7 @@ size_t GetTotalSize(const Dims &dimensions, const size_t elementSize) noexcept std::multiplies()); } -bool CheckIndexRange(const int index, const int upperLimit, - const int lowerLimit) noexcept +bool CheckIndexRange(const int index, const int upperLimit, const int lowerLimit) noexcept { bool inRange = false; if (index <= upperLimit && index >= lowerLimit) @@ -73,19 +71,18 @@ size_t NextExponentialSize(const size_t requiredSize, const size_t currentSize, const double growthFactorDouble = static_cast(growthFactor); - const double numerator = std::log(static_cast(requiredSize) / - static_cast(currentSize)); + const double numerator = + std::log(static_cast(requiredSize) / static_cast(currentSize)); const double denominator = std::log(growthFactorDouble); const double n = std::ceil(numerator / denominator); - const size_t nextExponentialSize = static_cast( - std::ceil(std::pow(growthFactorDouble, n) * currentSize)); + const size_t nextExponentialSize = + static_cast(std::ceil(std::pow(growthFactorDouble, n) * currentSize)); return nextExponentialSize; } -Box StartEndBox(const Dims &start, const Dims &count, - const bool reverse) noexcept +Box StartEndBox(const Dims &start, const Dims &count, const bool reverse) noexcept { Box box; box.first = start; @@ -165,8 +162,7 @@ Box IntersectionBox(const Box &box1, const Box &box2) noexcept return intersectionBox; } -Box IntersectionStartCount(const Dims &start1, const Dims &count1, - const Dims &start2, +Box IntersectionStartCount(const Dims &start1, const Dims &count1, const Dims &start2, const Dims &count2) noexcept { Box intersectionStartCount; @@ -189,8 +185,7 @@ Box IntersectionStartCount(const Dims &start1, const Dims &count1, for (size_t d = 0; d < dimensionsSize; ++d) { - const size_t intersectionStart = - (start1[d] < start2[d]) ? start2[d] : start1[d]; + const size_t intersectionStart = (start1[d] < start2[d]) ? start2[d] : start1[d]; // end, must be inclusive const size_t end1 = start1[d] + count1[d] - 1; @@ -198,8 +193,7 @@ Box IntersectionStartCount(const Dims &start1, const Dims &count1, const size_t intersectionEnd = (end1 > end2) ? end2 : end1; intersectionStartCount.first.push_back(intersectionStart); - intersectionStartCount.second.push_back(intersectionEnd - - intersectionStart + 1); + intersectionStartCount.second.push_back(intersectionEnd - intersectionStart + 1); } return intersectionStartCount; @@ -218,10 +212,8 @@ bool IdenticalBoxes(const Box &box1, const Box &box2) noexcept return true; } -bool IsIntersectionContiguousSubarray(const Box &blockBox, - const Box &intersectionBox, - const bool isRowMajor, - size_t &startOffset) noexcept +bool IsIntersectionContiguousSubarray(const Box &blockBox, const Box &intersectionBox, + const bool isRowMajor, size_t &startOffset) noexcept { const size_t dimensionsSize = blockBox.first.size(); size_t nElements = 1; // number of elements in dim 1..n-1 @@ -257,17 +249,14 @@ bool IsIntersectionContiguousSubarray(const Box &blockBox, } nElements *= (blockBox.second[d] - blockBox.first[d] + 1); } - startOffset = (intersectionBox.first[dSlowest] - blockBox.first[dSlowest]) * - nElements; + startOffset = (intersectionBox.first[dSlowest] - blockBox.first[dSlowest]) * nElements; return true; } -size_t LinearIndexWithStartCount(const Dims &start, const Dims &count, - const Dims &point, +size_t LinearIndexWithStartCount(const Dims &start, const Dims &count, const Dims &point, const bool isRowMajor) noexcept { - auto lf_RowMajor = [](const Dims &start, const Dims &count, - const Dims &point) -> size_t { + auto lf_RowMajor = [](const Dims &start, const Dims &count, const Dims &point) -> size_t { auto sit = start.rbegin(); auto cit = count.rbegin(); auto pit = point.rbegin(); @@ -283,8 +272,7 @@ size_t LinearIndexWithStartCount(const Dims &start, const Dims &count, return linearIndex; }; - auto lf_ColumnMajor = [](const Dims &start, const Dims &count, - const Dims &point) -> size_t { + auto lf_ColumnMajor = [](const Dims &start, const Dims &count, const Dims &point) -> size_t { auto sit = start.begin(); auto cit = count.begin(); auto pit = point.begin(); @@ -317,8 +305,7 @@ size_t LinearIndexWithStartCount(const Dims &start, const Dims &count, size_t LinearIndexWithEnd(const Dims &start, const Dims &end, const Dims &point, const bool isRowMajor) noexcept { - auto lf_RowMajor = [](const Dims &start, const Dims &end, - const Dims &point) -> size_t { + auto lf_RowMajor = [](const Dims &start, const Dims &end, const Dims &point) -> size_t { auto sit = start.rbegin(); auto eit = end.rbegin(); auto pit = point.rbegin(); @@ -335,8 +322,7 @@ size_t LinearIndexWithEnd(const Dims &start, const Dims &end, const Dims &point, return linearIndex; }; - auto lf_ColumnMajor = [](const Dims &start, const Dims &end, - const Dims &point) -> size_t { + auto lf_ColumnMajor = [](const Dims &start, const Dims &end, const Dims &point) -> size_t { auto sit = start.begin(); auto eit = end.begin(); auto pit = point.begin(); @@ -373,23 +359,19 @@ size_t LinearIndex(const Dims &start, const Dims &count, const Dims &point, return LinearIndexWithStartCount(start, count, point, isRowMajor); } -size_t LinearIndex(const Box &startEndBox, const Dims &point, - const bool isRowMajor) noexcept +size_t LinearIndex(const Box &startEndBox, const Dims &point, const bool isRowMajor) noexcept { - return LinearIndexWithEnd(startEndBox.first, startEndBox.second, point, - isRowMajor); + return LinearIndexWithEnd(startEndBox.first, startEndBox.second, point, isRowMajor); } -size_t GetDistance(const size_t end, const size_t start, - const std::string &hint) +size_t GetDistance(const size_t end, const size_t start, const std::string &hint) { if (end < start) { - helper::Throw( - "Helper", "adiosMath", "GetDistance", - "end position: " + std::to_string(end) + - " is smaller than start position " + std::to_string(start) + - ", " + hint); + helper::Throw("Helper", "adiosMath", "GetDistance", + "end position: " + std::to_string(end) + + " is smaller than start position " + + std::to_string(start) + ", " + hint); } return end - start; @@ -423,10 +405,9 @@ BlockDivisionInfo DivideBlock(const Dims &count, const size_t subblockSize, { if (divisionMethod != BlockDivisionMethod::Contiguous) { - helper::Throw( - "Helper", "adiosMath", "DivideBlock", - "adios2::helper::DivideBlock() only " - "works with Contiguous division method"); + helper::Throw("Helper", "adiosMath", "DivideBlock", + "adios2::helper::DivideBlock() only " + "works with Contiguous division method"); } const size_t ndim = count.size(); const size_t nElems = helper::GetTotalSize(count); @@ -437,11 +418,10 @@ BlockDivisionInfo DivideBlock(const Dims &count, const size_t subblockSize, } if (nBlocks64 > 4096) { - std::cerr - << "ADIOS WARNING: The StatsBlockSize parameter is causing a " - "data block to be divided up to more than 4096 sub-blocks. " - " This is an artificial limit to avoid metadata explosion." - << std::endl; + std::cerr << "ADIOS WARNING: The StatsBlockSize parameter is causing a " + "data block to be divided up to more than 4096 sub-blocks. " + " This is an artificial limit to avoid metadata explosion." + << std::endl; nBlocks64 = 4096; } diff --git a/source/adios2/helper/adiosMath.h b/source/adios2/helper/adiosMath.h index 4147f62209..5c55d2eddc 100644 --- a/source/adios2/helper/adiosMath.h +++ b/source/adios2/helper/adiosMath.h @@ -29,8 +29,7 @@ namespace helper * @param dimensions input containing size on each dimension {Nx, Ny, Nz} * @return product of all dimensions Nx * Ny * Nz */ -size_t GetTotalSize(const Dims &dimensions, - const size_t elementSize = 1) noexcept; +size_t GetTotalSize(const Dims &dimensions, const size_t elementSize = 1) noexcept; /** * Populates min and max for a selection region inside @@ -42,10 +41,9 @@ size_t GetTotalSize(const Dims &dimensions, * @param max */ template -void GetMinMaxSelection( - const T *values, const Dims &shape, const Dims &start, const Dims &count, - const bool isRowMajor, T &min, T &max, - const MemorySpace memSpace = MemorySpace::Host) noexcept; +void GetMinMaxSelection(const T *values, const Dims &shape, const Dims &start, const Dims &count, + const bool isRowMajor, T &min, T &max, + const MemorySpace memSpace = MemorySpace::Host) noexcept; /** * Gets the min and max from a values array of primitive types (not including @@ -74,8 +72,8 @@ void GetGPUMinMax(const T *values, const size_t size, T &min, T &max) noexcept; * @param max modulus from values */ template -void GetMinMaxComplex(const std::complex *values, const size_t size, - std::complex &min, std::complex &max) noexcept; +void GetMinMaxComplex(const std::complex *values, const size_t size, std::complex &min, + std::complex &max) noexcept; /** * Threaded version of GetMinMax. @@ -101,8 +99,8 @@ void GetMinMaxThreads(const T *values, const size_t size, T &min, T &max, * @param threads used for parallel computation */ template -void GetMinMaxThreads(const std::complex *values, const size_t size, T &min, - T &max, const unsigned int threads = 1) noexcept; +void GetMinMaxThreads(const std::complex *values, const size_t size, T &min, T &max, + const unsigned int threads = 1) noexcept; /** * Check if index is within (inclusive) limits @@ -112,8 +110,7 @@ void GetMinMaxThreads(const std::complex *values, const size_t size, T &min, * @param lowerLimit * @return true index is within limits */ -bool CheckIndexRange(const int index, const int upperLimit, - const int lowerLimit = 0) noexcept; +bool CheckIndexRange(const int index, const int upperLimit, const int lowerLimit = 0) noexcept; /** * Returns the appropriate size larger than requiredSize @@ -134,8 +131,7 @@ size_t NextExponentialSize(const size_t requiredSize, const size_t currentSize, * Row-Major interoperability * @return [start, end[ box */ -Box StartEndBox(const Dims &start, const Dims &count, - const bool reverse = false) noexcept; +Box StartEndBox(const Dims &start, const Dims &count, const bool reverse = false) noexcept; Box StartCountBox(const Dims &start, const Dims &end) noexcept; @@ -146,11 +142,9 @@ Box StartCountBox(const Dims &start, const Dims &end) noexcept; * @param box2 {start, end} input (end is exclusive) * @return empty if not interception, otherwise intersection box */ -Box IntersectionBox(const Box &box1, - const Box &box2) noexcept; +Box IntersectionBox(const Box &box1, const Box &box2) noexcept; -Box IntersectionStartCount(const Dims &start1, const Dims &count1, - const Dims &start2, +Box IntersectionStartCount(const Dims &start1, const Dims &count1, const Dims &start2, const Dims &count2) noexcept; /** @@ -173,10 +167,8 @@ bool IdenticalBoxes(const Box &box1, const Box &box2) noexcept; * @return true if intersection box is a contiguous subarray * of the block box, false otherwise */ -bool IsIntersectionContiguousSubarray(const Box &blockBox, - const Box &intersectionBox, - const bool isRowMajor, - size_t &startOffset) noexcept; +bool IsIntersectionContiguousSubarray(const Box &blockBox, const Box &intersectionBox, + const bool isRowMajor, size_t &startOffset) noexcept; /** * Get a linear index for a point inside a localBox depending on data layout @@ -198,8 +190,7 @@ size_t LinearIndex(const Dims &start, const Dims &count, const Dims &point, * @param isZeroIndex * @return linear index for contiguous memory */ -size_t LinearIndex(const Box &startEndBox, const Dims &point, - const bool isRowMajor) noexcept; +size_t LinearIndex(const Box &startEndBox, const Dims &point, const bool isRowMajor) noexcept; /** * Specialized for std::complex to do a comparison by std::norm. @@ -252,8 +243,7 @@ std::vector VectorsOp(BinaryOperation op, const std::vector &vector1, * @param hint added debug information, can be larger than 15 characters * @return end - start */ -size_t GetDistance(const size_t end, const size_t start, - const std::string &hint = ""); +size_t GetDistance(const size_t end, const size_t start, const std::string &hint = ""); /** A flag to indicate how a block is divided up. * At this time, only the contiguous method is supported @@ -318,10 +308,9 @@ Box GetSubBlock(const Dims &count, const BlockDivisionInfo &info, * pairs) */ template -void GetMinMaxSubblocks( - const T *values, const Dims &count, const BlockDivisionInfo &info, - std::vector &MinMaxs, T &bmin, T &bmax, const unsigned int threads, - const MemorySpace memSpace = MemorySpace::Host) noexcept; +void GetMinMaxSubblocks(const T *values, const Dims &count, const BlockDivisionInfo &info, + std::vector &MinMaxs, T &bmin, T &bmax, const unsigned int threads, + const MemorySpace memSpace = MemorySpace::Host) noexcept; /** * @brief Return a value within the min/max limits diff --git a/source/adios2/helper/adiosMemory.cpp b/source/adios2/helper/adiosMemory.cpp index 779cd68cef..211f109674 100644 --- a/source/adios2/helper/adiosMemory.cpp +++ b/source/adios2/helper/adiosMemory.cpp @@ -20,9 +20,8 @@ namespace adios2 namespace helper { -size_t CopyMemoryWithOpHeader(const char *src, const Dims &blockCount, - const DataType type, char *dest, - size_t destOffset, const MemorySpace memSpace) +size_t CopyMemoryWithOpHeader(const char *src, const Dims &blockCount, const DataType type, + char *dest, size_t destOffset, const MemorySpace memSpace) { const size_t sizeIn = GetTotalSize(blockCount, GetDataTypeSize(type)); CopyContiguousMemory(src, sizeIn, dest + destOffset, @@ -42,10 +41,10 @@ void CopyPayloadStride(const char *src, const size_t payloadStride, char *dest, if (destType == DataType::None) { } -#define declare_type(T) \ - else if (destType == GetDataType()) \ - { \ - CopyEndianReverse(src, payloadStride, reinterpret_cast(dest)); \ +#define declare_type(T) \ + else if (destType == GetDataType()) \ + { \ + CopyEndianReverse(src, payloadStride, reinterpret_cast(dest)); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) @@ -62,8 +61,7 @@ void CopyPayloadStride(const char *src, const size_t payloadStride, char *dest, #endif } -Dims DestDimsFinal(const Dims &destDims, const bool destRowMajor, - const bool srcRowMajor) +Dims DestDimsFinal(const Dims &destDims, const bool destRowMajor, const bool srcRowMajor) { Dims destDimsFinal = destDims; if (srcRowMajor != destRowMajor) @@ -73,17 +71,16 @@ Dims DestDimsFinal(const Dims &destDims, const bool destRowMajor, return destDimsFinal; } -void ClipRowMajor(char *dest, const Dims &destStart, const Dims &destCount, - const bool destRowMajor, const char *src, - const Dims &srcStart, const Dims &srcCount, +void ClipRowMajor(char *dest, const Dims &destStart, const Dims &destCount, const bool destRowMajor, + const char *src, const Dims &srcStart, const Dims &srcCount, const Dims & /*destMemStart*/, const Dims & /*destMemCount*/, - const Dims &srcMemStart, const Dims &srcMemCount, - const bool endianReverse, const DataType destType) + const Dims &srcMemStart, const Dims &srcMemCount, const bool endianReverse, + const DataType destType) { const Dims destStartFinal = DestDimsFinal(destStart, destRowMajor, true); const Dims destCountFinal = DestDimsFinal(destCount, destRowMajor, true); - const Box intersectionBox = IntersectionStartCount( - destStartFinal, destCountFinal, srcStart, srcCount); + const Box intersectionBox = + IntersectionStartCount(destStartFinal, destCountFinal, srcStart, srcCount); const Dims &interStart = intersectionBox.first; const Dims &interCount = intersectionBox.second; @@ -118,8 +115,7 @@ void ClipRowMajor(char *dest, const Dims &destStart, const Dims &destCount, /// start iteration Dims currentPoint(interStart); // current point for memory copy - const size_t interOffset = - LinearIndex(srcStart, srcCount, interStart, true); + const size_t interOffset = LinearIndex(srcStart, srcCount, interStart, true); bool run = true; @@ -129,20 +125,18 @@ void ClipRowMajor(char *dest, const Dims &destStart, const Dims &destCount, // here copy current linear memory between currentPoint and end const size_t srcBeginOffset = srcMemStart.empty() - ? LinearIndex(srcStart, srcCount, currentPoint, true) - - interOffset + ? LinearIndex(srcStart, srcCount, currentPoint, true) - interOffset : LinearIndex(Dims(srcMemCount.size(), 0), srcMemCount, VectorsOp(std::plus(), - VectorsOp(std::minus(), - currentPoint, interStart), + VectorsOp(std::minus(), currentPoint, interStart), srcMemStart), true); - const size_t destBeginOffset = helper::LinearIndex( - destStartFinal, destCountFinal, currentPoint, true); + const size_t destBeginOffset = + helper::LinearIndex(destStartFinal, destCountFinal, currentPoint, true); - CopyPayloadStride(src + srcBeginOffset, stride, dest + destBeginOffset, - endianReverse, destType); + CopyPayloadStride(src + srcBeginOffset, stride, dest + destBeginOffset, endianReverse, + destType); size_t p = startCoord; while (true) @@ -170,17 +164,15 @@ void ClipRowMajor(char *dest, const Dims &destStart, const Dims &destCount, } void ClipColumnMajor(char *dest, const Dims &destStart, const Dims &destCount, - const bool destRowMajor, const char *src, - const Dims &srcStart, const Dims &srcCount, - const Dims & /*destMemStart*/, + const bool destRowMajor, const char *src, const Dims &srcStart, + const Dims &srcCount, const Dims & /*destMemStart*/, const Dims & /*destMemCount*/, const Dims &srcMemStart, - const Dims &srcMemCount, const bool endianReverse, - const DataType destType) + const Dims &srcMemCount, const bool endianReverse, const DataType destType) { const Dims destStartFinal = DestDimsFinal(destStart, destRowMajor, false); const Dims destCountFinal = DestDimsFinal(destCount, destRowMajor, false); - const Box intersectionBox = IntersectionStartCount( - destStartFinal, destCountFinal, srcStart, srcCount); + const Box intersectionBox = + IntersectionStartCount(destStartFinal, destCountFinal, srcStart, srcCount); const Dims &interStart = intersectionBox.first; const Dims &interCount = intersectionBox.second; @@ -205,8 +197,7 @@ void ClipColumnMajor(char *dest, const Dims &destStart, const Dims &destCount, /// start iteration Dims currentPoint(interStart); // current point for memory copy - const size_t interOffset = - LinearIndex(srcStart, srcCount, interStart, false); + const size_t interOffset = LinearIndex(srcStart, srcCount, interStart, false); bool run = true; @@ -215,20 +206,18 @@ void ClipColumnMajor(char *dest, const Dims &destStart, const Dims &destCount, // here copy current linear memory between currentPoint and end const size_t srcBeginOffset = srcMemStart.empty() - ? LinearIndex(srcStart, srcCount, currentPoint, false) - - interOffset + ? LinearIndex(srcStart, srcCount, currentPoint, false) - interOffset : LinearIndex(Dims(srcMemCount.size(), 0), srcMemCount, VectorsOp(std::plus(), - VectorsOp(std::minus(), - currentPoint, interStart), + VectorsOp(std::minus(), currentPoint, interStart), srcMemStart), false); - const size_t destBeginOffset = helper::LinearIndex( - destStartFinal, destCountFinal, currentPoint, false); + const size_t destBeginOffset = + helper::LinearIndex(destStartFinal, destCountFinal, currentPoint, false); - CopyPayloadStride(src + srcBeginOffset, stride, dest + destBeginOffset, - endianReverse, destType); + CopyPayloadStride(src + srcBeginOffset, stride, dest + destBeginOffset, endianReverse, + destType); size_t p = startCoord; while (true) @@ -259,12 +248,10 @@ void ClipColumnMajor(char *dest, const Dims &destStart, const Dims &destCount, int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, const bool inIsRowMajor, const bool inIsLittleEndian, char *out, - const CoreDims &outStart, const CoreDims &outCount, - const bool outIsRowMajor, const bool outIsLittleEndian, - const int typeSize, const CoreDims &inMemStart, - const CoreDims &inMemCount, const CoreDims &outMemStart, - const CoreDims &outMemCount, const bool safeMode, - MemorySpace MemSpace) + const CoreDims &outStart, const CoreDims &outCount, const bool outIsRowMajor, + const bool outIsLittleEndian, const int typeSize, const CoreDims &inMemStart, + const CoreDims &inMemCount, const CoreDims &outMemStart, const CoreDims &outMemCount, + const bool safeMode, MemorySpace MemSpace) { @@ -289,22 +276,19 @@ int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, size_t minContDim, blockSize; const char *inOvlpBase = nullptr; char *outOvlpBase = nullptr; - auto GetInEnd = [](CoreDims &inEnd, const CoreDims &inStart, - const CoreDims &inCount) { + auto GetInEnd = [](CoreDims &inEnd, const CoreDims &inStart, const CoreDims &inCount) { for (size_t i = 0; i < inStart.size(); i++) { inEnd[i] = inStart[i] + inCount[i] - 1; } }; - auto GetOutEnd = [](CoreDims &outEnd, const CoreDims &outStart, - const CoreDims &output_count) { + auto GetOutEnd = [](CoreDims &outEnd, const CoreDims &outStart, const CoreDims &output_count) { for (size_t i = 0; i < outStart.size(); i++) { outEnd[i] = outStart[i] + output_count[i] - 1; } }; - auto GetOvlpStart = [](CoreDims &ovlpStart, const CoreDims &inStart, - const CoreDims &outStart) { + auto GetOvlpStart = [](CoreDims &ovlpStart, const CoreDims &inStart, const CoreDims &outStart) { for (size_t i = 0; i < ovlpStart.size(); i++) { ovlpStart[i] = inStart[i] > outStart[i] ? inStart[i] : outStart[i]; @@ -316,8 +300,7 @@ int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, ovlpEnd[i] = inEnd[i] < outEnd[i] ? inEnd[i] : outEnd[i]; } }; - auto GetOvlpCount = [](CoreDims &ovlpCount, CoreDims &ovlpStart, - CoreDims &ovlpEnd) { + auto GetOvlpCount = [](CoreDims &ovlpCount, CoreDims &ovlpStart, CoreDims &ovlpEnd) { for (size_t i = 0; i < ovlpCount.size(); i++) { ovlpCount[i] = ovlpEnd[i] - ovlpStart[i] + 1; @@ -334,15 +317,13 @@ int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, return true; }; - auto GetIoStrides = [](CoreDims &ioStride, const CoreDims &ioCount, - size_t elmSize) { + auto GetIoStrides = [](CoreDims &ioStride, const CoreDims &ioCount, size_t elmSize) { // ioStride[i] holds the total number of elements under each element // of the i'th dimension ioStride[ioStride.size() - 1] = elmSize; if (ioStride.size() > 1) { - ioStride[ioStride.size() - 2] = - ioCount[ioStride.size() - 1] * elmSize; + ioStride[ioStride.size() - 2] = ioCount[ioStride.size() - 1] * elmSize; } if (ioStride.size() > 2) { @@ -362,27 +343,24 @@ int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, } }; - auto GetInOvlpBase = [](const char *&inOvlpBase, const char *in, - const CoreDims &inStart, CoreDims &inStride, - CoreDims &ovlpStart) { + auto GetInOvlpBase = [](const char *&inOvlpBase, const char *in, const CoreDims &inStart, + CoreDims &inStride, CoreDims &ovlpStart) { inOvlpBase = in; for (size_t i = 0; i < inStart.size(); i++) { inOvlpBase = inOvlpBase + (ovlpStart[i] - inStart[i]) * inStride[i]; } }; - auto GetOutOvlpBase = [](char *&outOvlpBase, char *out, - const CoreDims &outStart, CoreDims &outStride, - CoreDims &ovlpStart) { + auto GetOutOvlpBase = [](char *&outOvlpBase, char *out, const CoreDims &outStart, + CoreDims &outStride, CoreDims &ovlpStart) { outOvlpBase = out; for (size_t i = 0; i < outStart.size(); i++) { - outOvlpBase = - outOvlpBase + (ovlpStart[i] - outStart[i]) * outStride[i]; + outOvlpBase = outOvlpBase + (ovlpStart[i] - outStart[i]) * outStride[i]; } }; - auto GetIoOvlpGapSize = [](CoreDims &ioOvlpGapSize, CoreDims &ioStride, - const CoreDims &ioCount, CoreDims &ovlpCount) { + auto GetIoOvlpGapSize = [](CoreDims &ioOvlpGapSize, CoreDims &ioStride, const CoreDims &ioCount, + CoreDims &ovlpCount) { for (size_t i = 0; i < ioOvlpGapSize.size(); i++) { ioOvlpGapSize[i] = (ioCount[i] - ovlpCount[i]) * ioStride[i]; @@ -412,8 +390,7 @@ int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, } return i; }; - auto GetBlockSize = [](CoreDims &ovlpCount, size_t minContDim, - size_t elmSize) { + auto GetBlockSize = [](CoreDims &ovlpCount, size_t minContDim, size_t elmSize) { size_t res = elmSize; for (size_t i = minContDim; i < ovlpCount.size(); i++) { @@ -422,8 +399,7 @@ int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, return res; }; - auto GetRltvOvlpStartPos = [](CoreDims &ioRltvOvlpStart, - const CoreDims &ioStart, + auto GetRltvOvlpStartPos = [](CoreDims &ioRltvOvlpStart, const CoreDims &ioStart, CoreDims &ovlpStart) { for (size_t i = 0; i < ioStart.size(); i++) { @@ -462,9 +438,8 @@ int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, #ifdef ADIOS2_HAVE_GPU_SUPPORT if (MemSpace == MemorySpace::GPU) { - helper::NdCopyGPU(inOvlpBase, outOvlpBase, inOvlpGapSize, - outOvlpGapSize, ovlpCount, minContDim, - blockSize, MemSpace); + helper::NdCopyGPU(inOvlpBase, outOvlpBase, inOvlpGapSize, outOvlpGapSize, ovlpCount, + minContDim, blockSize, MemSpace); return 0; } #endif @@ -473,8 +448,7 @@ int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, // of data. if (!safeMode) { - NdCopyRecurDFSeqPadding(0, inOvlpBase, outOvlpBase, - inOvlpGapSize, outOvlpGapSize, + NdCopyRecurDFSeqPadding(0, inOvlpBase, outOvlpBase, inOvlpGapSize, outOvlpGapSize, ovlpCount, minContDim, blockSize); } else // safeMode @@ -482,9 +456,8 @@ int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, // //alternative iterative version, 10% slower then // recursive // //use it when very high demension is used. - NdCopyIterDFSeqPadding(inOvlpBase, outOvlpBase, inOvlpGapSize, - outOvlpGapSize, ovlpCount, minContDim, - blockSize); + NdCopyIterDFSeqPadding(inOvlpBase, outOvlpBase, inOvlpGapSize, outOvlpGapSize, + ovlpCount, minContDim, blockSize); } } // different endianess mode @@ -500,17 +473,15 @@ int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, #endif if (!safeMode) { - NdCopyRecurDFSeqPaddingRevEndian( - 0, inOvlpBase, outOvlpBase, inOvlpGapSize, outOvlpGapSize, - ovlpCount, minContDim, blockSize, typeSize, - blockSize / typeSize); + NdCopyRecurDFSeqPaddingRevEndian(0, inOvlpBase, outOvlpBase, inOvlpGapSize, + outOvlpGapSize, ovlpCount, minContDim, blockSize, + typeSize, blockSize / typeSize); } else { - NdCopyIterDFSeqPaddingRevEndian( - inOvlpBase, outOvlpBase, inOvlpGapSize, outOvlpGapSize, - ovlpCount, minContDim, blockSize, typeSize, - blockSize / typeSize); + NdCopyIterDFSeqPaddingRevEndian(inOvlpBase, outOvlpBase, inOvlpGapSize, + outOvlpGapSize, ovlpCount, minContDim, blockSize, + typeSize, blockSize / typeSize); } } } @@ -585,8 +556,7 @@ int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, // get reversed order outOvlpStart DimsArray revOvlpStart(ovlpStart); std::reverse(revOvlpStart.begin(), revOvlpStart.end()); - GetRltvOvlpStartPos(outRltvOvlpStartPos, outMemStartNC, - revOvlpStart); + GetRltvOvlpStartPos(outRltvOvlpStartPos, outMemStartNC, revOvlpStart); } // col-major ==> row-major mode else if (!inIsRowMajor && outIsRowMajor) @@ -629,16 +599,14 @@ int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, { if (!safeMode) { - NdCopyRecurDFNonSeqDynamic(0, inOvlpBase, outOvlpBase, - inRltvOvlpStartPos, - outRltvOvlpStartPos, inStride, - outStride, ovlpCount, typeSize); + NdCopyRecurDFNonSeqDynamic(0, inOvlpBase, outOvlpBase, inRltvOvlpStartPos, + outRltvOvlpStartPos, inStride, outStride, ovlpCount, + typeSize); } else { NdCopyIterDFDynamic(inOvlpBase, outOvlpBase, inRltvOvlpStartPos, - outRltvOvlpStartPos, inStride, outStride, - ovlpCount, typeSize); + outRltvOvlpStartPos, inStride, outStride, ovlpCount, typeSize); } } // different Endian" @@ -646,17 +614,15 @@ int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, { if (!safeMode) { - NdCopyRecurDFNonSeqDynamicRevEndian( - 0, inOvlpBase, outOvlpBase, inRltvOvlpStartPos, - outRltvOvlpStartPos, inStride, outStride, ovlpCount, - typeSize); + NdCopyRecurDFNonSeqDynamicRevEndian(0, inOvlpBase, outOvlpBase, inRltvOvlpStartPos, + outRltvOvlpStartPos, inStride, outStride, + ovlpCount, typeSize); } else { - NdCopyIterDFDynamicRevEndian(inOvlpBase, outOvlpBase, - inRltvOvlpStartPos, - outRltvOvlpStartPos, inStride, - outStride, ovlpCount, typeSize); + NdCopyIterDFDynamicRevEndian(inOvlpBase, outOvlpBase, inRltvOvlpStartPos, + outRltvOvlpStartPos, inStride, outStride, ovlpCount, + typeSize); } } } @@ -664,12 +630,11 @@ int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, } //*************** End of NdCopy() and its 8 helpers *************** -void CopyPayload(char *dest, const Dims &destStart, const Dims &destCount, - const bool destRowMajor, const char *src, const Dims &srcStart, - const Dims &srcCount, const bool srcRowMajor, - const Dims &destMemStart, const Dims &destMemCount, - const Dims &srcMemStart, const Dims &srcMemCount, - const bool endianReverse, const DataType destType) noexcept +void CopyPayload(char *dest, const Dims &destStart, const Dims &destCount, const bool destRowMajor, + const char *src, const Dims &srcStart, const Dims &srcCount, + const bool srcRowMajor, const Dims &destMemStart, const Dims &destMemCount, + const Dims &srcMemStart, const Dims &srcMemCount, const bool endianReverse, + const DataType destType) noexcept { if (srcStart.size() == 1) // 1D copy memory { @@ -679,29 +644,27 @@ void CopyPayload(char *dest, const Dims &destStart, const Dims &destCount, const Dims &interCount = intersectionBox.second; const size_t srcBeginOffset = - srcMemStart.empty() - ? interStart.front() - srcStart.front() - : interStart.front() - srcStart.front() + srcMemStart.front(); + srcMemStart.empty() ? interStart.front() - srcStart.front() + : interStart.front() - srcStart.front() + srcMemStart.front(); const size_t stride = interCount.front(); const size_t destBeginOffset = interStart.front() - destStart.front(); - CopyPayloadStride(src + srcBeginOffset, stride, dest + destBeginOffset, - endianReverse, destType); + CopyPayloadStride(src + srcBeginOffset, stride, dest + destBeginOffset, endianReverse, + destType); return; } if (srcRowMajor) // stored with C, C++, Python { - ClipRowMajor(dest, destStart, destCount, destRowMajor, src, srcStart, - srcCount, destMemStart, destMemCount, srcMemStart, - srcMemCount, endianReverse, destType); + ClipRowMajor(dest, destStart, destCount, destRowMajor, src, srcStart, srcCount, + destMemStart, destMemCount, srcMemStart, srcMemCount, endianReverse, destType); } else // stored with Fortran, R { - ClipColumnMajor(dest, destStart, destCount, destRowMajor, src, srcStart, - srcCount, destMemStart, destMemCount, srcMemStart, - srcMemCount, endianReverse, destType); + ClipColumnMajor(dest, destStart, destCount, destRowMajor, src, srcStart, srcCount, + destMemStart, destMemCount, srcMemStart, srcMemCount, endianReverse, + destType); } } diff --git a/source/adios2/helper/adiosMemory.h b/source/adios2/helper/adiosMemory.h index 02a1248825..10076fd8c7 100644 --- a/source/adios2/helper/adiosMemory.h +++ b/source/adios2/helper/adiosMemory.h @@ -37,26 +37,24 @@ void CopyEndianReverse(const char *src, const size_t payloadStride, T *dest); * @param elements number of elements of source type */ template -void InsertToBuffer(std::vector &buffer, const T *source, - const size_t elements = 1) noexcept; +void InsertToBuffer(std::vector &buffer, const T *source, const size_t elements = 1) noexcept; /* * Copies data from a GPU buffer to a specific location in the adios buffer */ template -void CopyFromGPUToBuffer(std::vector &dest, size_t &position, - const T *source, MemorySpace memSpace, - const size_t elements = 1) noexcept; +void CopyFromGPUToBuffer(std::vector &dest, size_t &position, const T *source, + MemorySpace memSpace, const size_t elements = 1) noexcept; template -void CopyFromGPUToBuffer(char *dest, size_t position, const T *GPUbuffer, - MemorySpace memSpace, const size_t size) noexcept; +void CopyFromGPUToBuffer(char *dest, size_t position, const T *GPUbuffer, MemorySpace memSpace, + const size_t size) noexcept; /* * Copies data from a specific location in the adios buffer to a GPU buffer */ template -void CopyFromBufferToGPU(T *GPUbuffer, size_t position, const char *source, - MemorySpace memSpace, const size_t size) noexcept; +void CopyFromBufferToGPU(T *GPUbuffer, size_t position, const char *source, MemorySpace memSpace, + const size_t size) noexcept; /** * Copies data to a specific location in the buffer updating position @@ -81,13 +79,12 @@ void CopyToBuffer(std::vector &buffer, size_t &position, const T *source, * @param threads number of threads sharing the copy load */ template -void CopyToBufferThreads(std::vector &buffer, size_t &position, - const T *source, const size_t elements = 1, - const unsigned int threads = 1) noexcept; +void CopyToBufferThreads(std::vector &buffer, size_t &position, const T *source, + const size_t elements = 1, const unsigned int threads = 1) noexcept; template -void ReverseCopyFromBuffer(const std::vector &buffer, size_t &position, - T *destination, const size_t elements = 1) noexcept; +void ReverseCopyFromBuffer(const std::vector &buffer, size_t &position, T *destination, + const size_t elements = 1) noexcept; /** * Copy memory from a buffer at a certain input position @@ -98,8 +95,8 @@ void ReverseCopyFromBuffer(const std::vector &buffer, size_t &position, * @param elements number of elements of destination type */ template -void CopyFromBuffer(const std::vector &buffer, size_t &position, - T *destination, const size_t elements = 1) noexcept; +void CopyFromBuffer(const std::vector &buffer, size_t &position, T *destination, + const size_t elements = 1) noexcept; /** * Cast an element to uint64 and insert to a buffer @@ -117,8 +114,8 @@ T ReadValue(const std::vector &buffer, size_t &position, * output must be pre-allocated. */ template -void ReadArray(const std::vector &buffer, size_t &position, T *output, - const size_t nElems, const bool isLittleEndian = true) noexcept; +void ReadArray(const std::vector &buffer, size_t &position, T *output, const size_t nElems, + const bool isLittleEndian = true) noexcept; /** * General function to copy memory between blocks of different type and start @@ -137,23 +134,17 @@ void ReadArray(const std::vector &buffer, size_t &position, T *output, * @param srcMemCount */ template -void CopyMemoryBlock(T *dest, const Dims &destStart, const Dims &destCount, - const bool destRowMajor, const U *src, - const Dims &srcStart, const Dims &srcCount, +void CopyMemoryBlock(T *dest, const Dims &destStart, const Dims &destCount, const bool destRowMajor, + const U *src, const Dims &srcStart, const Dims &srcCount, const bool srcRowMajor, const bool endianReverse = false, - const Dims &destMemStart = Dims(), - const Dims &destMemCount = Dims(), - const Dims &srcMemStart = Dims(), - const Dims &srcMemCount = Dims()) noexcept; + const Dims &destMemStart = Dims(), const Dims &destMemCount = Dims(), + const Dims &srcMemStart = Dims(), const Dims &srcMemCount = Dims()) noexcept; -void CopyPayload(char *dest, const Dims &destStart, const Dims &destCount, - const bool destRowMajor, const char *src, const Dims &srcStart, - const Dims &srcCount, const bool srcRowMajor, - const Dims &destMemStart = Dims(), - const Dims &destMemCount = Dims(), - const Dims &srcMemStart = Dims(), - const Dims &srcMemCount = Dims(), - const bool endianReverse = false, +void CopyPayload(char *dest, const Dims &destStart, const Dims &destCount, const bool destRowMajor, + const char *src, const Dims &srcStart, const Dims &srcCount, + const bool srcRowMajor, const Dims &destMemStart = Dims(), + const Dims &destMemCount = Dims(), const Dims &srcMemStart = Dims(), + const Dims &srcMemCount = Dims(), const bool endianReverse = false, const DataType destType = DataType::None) noexcept; /** @@ -173,27 +164,20 @@ void CopyPayload(char *dest, const Dims &destStart, const Dims &destCount, */ template void ClipContiguousMemory(T *dest, const Dims &destStart, const Dims &destCount, - const char *contiguousMemory, - const Box &blockBox, - const Box &intersectionBox, - const bool isRowMajor = true, - const bool reverseDimensions = false, - const bool endianReverse = false, + const char *contiguousMemory, const Box &blockBox, + const Box &intersectionBox, const bool isRowMajor = true, + const bool reverseDimensions = false, const bool endianReverse = false, const MemorySpace memSpace = MemorySpace::Host); template void ClipContiguousMemory(T *dest, const Dims &destStart, const Dims &destCount, - const std::vector &contiguousMemory, - const Box &blockBox, - const Box &intersectionBox, - const bool isRowMajor = true, - const bool reverseDimensions = false, - const bool endianReverse = false, + const std::vector &contiguousMemory, const Box &blockBox, + const Box &intersectionBox, const bool isRowMajor = true, + const bool reverseDimensions = false, const bool endianReverse = false, const MemorySpace memSpace = MemorySpace::Host); -size_t CopyMemoryWithOpHeader(const char *src, const Dims &blockCount, - const DataType type, char *dest, - size_t headerSize, const MemorySpace memSpace); +size_t CopyMemoryWithOpHeader(const char *src, const Dims &blockCount, const DataType type, + char *dest, size_t headerSize, const MemorySpace memSpace); template void CopyContiguousMemory(const char *src, const size_t stride, T *dest, @@ -208,12 +192,10 @@ void CopyContiguousMemory(const char *src, const size_t stride, T *dest, * @param end */ template -void ClipVector(std::vector &vec, const size_t start, - const size_t end) noexcept; +void ClipVector(std::vector &vec, const size_t start, const size_t end) noexcept; template -void Resize(std::vector &vec, const size_t dataSize, const std::string hint, - T value = T()); +void Resize(std::vector &vec, const size_t dataSize, const std::string hint, T value = T()); /** * Author:Shawn Yang, shawnyang610@gmail.com @@ -253,14 +235,11 @@ void Resize(std::vector &vec, const size_t dataSize, const std::string hint, int NdCopy(const char *in, const CoreDims &inStart, const CoreDims &inCount, const bool inIsRowMajor, const bool inIsLittleEndian, char *out, - const CoreDims &outStart, const CoreDims &outCount, - const bool outIsRowMajor, const bool outIsLittleEndian, - const int typeSize, const CoreDims &inMemStart = CoreDims(), - const CoreDims &inMemCount = CoreDims(), - const CoreDims &outMemStart = CoreDims(), - const CoreDims &outMemCount = CoreDims(), - const bool safeMode = false, - MemorySpace MemSpace = MemorySpace::Host); + const CoreDims &outStart, const CoreDims &outCount, const bool outIsRowMajor, + const bool outIsLittleEndian, const int typeSize, + const CoreDims &inMemStart = CoreDims(), const CoreDims &inMemCount = CoreDims(), + const CoreDims &outMemStart = CoreDims(), const CoreDims &outMemCount = CoreDims(), + const bool safeMode = false, MemorySpace MemSpace = MemorySpace::Host); template size_t PayloadSize(const T *data, const Dims &count) noexcept; diff --git a/source/adios2/helper/adiosMpiHandshake.cpp b/source/adios2/helper/adiosMpiHandshake.cpp index 3d996dc446..44df5c50d6 100644 --- a/source/adios2/helper/adiosMpiHandshake.cpp +++ b/source/adios2/helper/adiosMpiHandshake.cpp @@ -24,22 +24,20 @@ namespace adios2 namespace helper { -void HandshakeComm(const std::string &filename, const char mode, - const int timeoutSeconds, MPI_Comm localComm, - MPI_Group &streamGroup, MPI_Group &writerGroup, - MPI_Group &readerGroup, MPI_Comm &streamComm, - MPI_Comm &writerComm, MPI_Comm &readerComm, int verbosity) +void HandshakeComm(const std::string &filename, const char mode, const int timeoutSeconds, + MPI_Comm localComm, MPI_Group &streamGroup, MPI_Group &writerGroup, + MPI_Group &readerGroup, MPI_Comm &streamComm, MPI_Comm &writerComm, + MPI_Comm &readerComm, int verbosity) { - auto appRankMaps = - HandshakeRank(filename, mode, timeoutSeconds, localComm, verbosity); + auto appRankMaps = HandshakeRank(filename, mode, timeoutSeconds, localComm, verbosity); MPI_Group worldGroup; MPI_Comm_group(MPI_COMM_WORLD, &worldGroup); - MPI_Group_incl(worldGroup, static_cast(appRankMaps[0].size()), - appRankMaps[0].data(), &streamGroup); - MPI_Group_incl(worldGroup, static_cast(appRankMaps[1].size()), - appRankMaps[1].data(), &writerGroup); - MPI_Group_incl(worldGroup, static_cast(appRankMaps[2].size()), - appRankMaps[2].data(), &readerGroup); + MPI_Group_incl(worldGroup, static_cast(appRankMaps[0].size()), appRankMaps[0].data(), + &streamGroup); + MPI_Group_incl(worldGroup, static_cast(appRankMaps[1].size()), appRankMaps[1].data(), + &writerGroup); + MPI_Group_incl(worldGroup, static_cast(appRankMaps[2].size()), appRankMaps[2].data(), + &readerGroup); #ifdef _WIN32 MPI_Comm_create(MPI_COMM_WORLD, streamGroup, &streamComm); MPI_Comm_create(MPI_COMM_WORLD, writerGroup, &writerComm); @@ -51,9 +49,9 @@ void HandshakeComm(const std::string &filename, const char mode, #endif } -const std::vector> -HandshakeRank(const std::string &filename, const char mode, - const int timeoutSeconds, MPI_Comm localComm, int verbosity) +const std::vector> HandshakeRank(const std::string &filename, const char mode, + const int timeoutSeconds, MPI_Comm localComm, + int verbosity) { std::vector> ret(3); @@ -70,8 +68,7 @@ HandshakeRank(const std::string &filename, const char mode, std::vector allLocalRanks(localSize); - MPI_Gather(&worldRank, 1, MPI_INT, allLocalRanks.data(), 1, MPI_INT, 0, - localComm); + MPI_Gather(&worldRank, 1, MPI_INT, allLocalRanks.data(), 1, MPI_INT, 0, localComm); if (localRank == 0) { @@ -105,8 +102,7 @@ HandshakeRank(const std::string &filename, const char mode, { auto nowTime = std::chrono::system_clock::now(); auto duration = - std::chrono::duration_cast( - nowTime - startTime); + std::chrono::duration_cast(nowTime - startTime); if (duration.count() > timeoutSeconds) { helper::Throw( @@ -211,8 +207,7 @@ HandshakeRank(const std::string &filename, const char mode, for (int i = 0; i < 3; ++i) { - MPI_Bcast(ret[i].data(), static_cast(ret[i].size()), MPI_INT, 0, - localComm); + MPI_Bcast(ret[i].data(), static_cast(ret[i].size()), MPI_INT, 0, localComm); } if (verbosity >= 5) diff --git a/source/adios2/helper/adiosMpiHandshake.h b/source/adios2/helper/adiosMpiHandshake.h index 2b89167a01..01cd400764 100644 --- a/source/adios2/helper/adiosMpiHandshake.h +++ b/source/adios2/helper/adiosMpiHandshake.h @@ -48,16 +48,14 @@ namespace helper * for stream *filename*. [1] is the vector of all writer ranks for stream * *filename*. [2] is the vector of all reader ranks for stream *filename*. */ -const std::vector> -HandshakeRank(const std::string &filename, const char mode, - const int timeoutSeconds, MPI_Comm localComm, int verbosity = 0); - -void HandshakeComm(const std::string &filename, const char mode, - const int timeoutSeconds, MPI_Comm localComm, - MPI_Group &streamGroup, MPI_Group &writerGroup, - MPI_Group &readerGroup, MPI_Comm &streamComm, - MPI_Comm &writerComm, MPI_Comm &readerComm, - int verbosity = 0); +const std::vector> HandshakeRank(const std::string &filename, const char mode, + const int timeoutSeconds, MPI_Comm localComm, + int verbosity = 0); + +void HandshakeComm(const std::string &filename, const char mode, const int timeoutSeconds, + MPI_Comm localComm, MPI_Group &streamGroup, MPI_Group &writerGroup, + MPI_Group &readerGroup, MPI_Comm &streamComm, MPI_Comm &writerComm, + MPI_Comm &readerComm, int verbosity = 0); } // end namespace helper } // end namespace adios2 diff --git a/source/adios2/helper/adiosNetwork.cpp b/source/adios2/helper/adiosNetwork.cpp index b35a19c0ed..dce2872b02 100644 --- a/source/adios2/helper/adiosNetwork.cpp +++ b/source/adios2/helper/adiosNetwork.cpp @@ -54,8 +54,7 @@ AvailableIpAddresses() noexcept close(socket_handler); return ips; } - for (struct if_nameindex *p = head; - !(p->if_index == 0 && p->if_name == NULL); ++p) + for (struct if_nameindex *p = head; !(p->if_index == 0 && p->if_name == NULL); ++p) { struct ifreq req; strncpy(req.ifr_name, p->if_name, IFNAMSIZ); @@ -69,8 +68,7 @@ AvailableIpAddresses() noexcept close(socket_handler); return ips; } - const std::string ip = - inet_ntoa(((struct sockaddr_in *)&req.ifr_addr)->sin_addr); + const std::string ip = inet_ntoa(((struct sockaddr_in *)&req.ifr_addr)->sin_addr); if (ip != "127.0.0.1") { ips.emplace_back(ip); @@ -81,11 +79,9 @@ AvailableIpAddresses() noexcept return ips; } -void HandshakeWriter(Comm const &comm, size_t &appID, - std::vector &fullAddresses, - const std::string &name, const std::string &engineName, - const int basePort, const int channelsPerRank, - const int maxRanksPerNode, const int maxAppsPerNode) +void HandshakeWriter(Comm const &comm, size_t &appID, std::vector &fullAddresses, + const std::string &name, const std::string &engineName, const int basePort, + const int channelsPerRank, const int maxRanksPerNode, const int maxAppsPerNode) { int mpiRank = comm.Rank(); @@ -131,8 +127,7 @@ void HandshakeWriter(Comm const &comm, size_t &appID, auto size = numRead.GetSize(); std::vector numAppsChar(size); numRead.Read(numAppsChar.data(), numAppsChar.size()); - appID = - 1 + stoi(std::string(numAppsChar.begin(), numAppsChar.end())); + appID = 1 + stoi(std::string(numAppsChar.begin(), numAppsChar.end())); numRead.Close(); } catch (...) @@ -155,19 +150,16 @@ void HandshakeWriter(Comm const &comm, size_t &appID, { std::string addr = "tcp://" + ip + ":" + - std::to_string(basePort + (100 * appID) + - (mpiRank % 1000) * channelsPerRank + i) + + std::to_string(basePort + (100 * appID) + (mpiRank % 1000) * channelsPerRank + i) + "\0"; fullAddresses.push_back(addr); } nlohmann::json localAddressesJson = fullAddresses; std::string localAddressesStr = localAddressesJson.dump(); std::vector localAddressesChar(64 * channelsPerRank, '\0'); - std::memcpy(localAddressesChar.data(), localAddressesStr.c_str(), - localAddressesStr.size()); + std::memcpy(localAddressesChar.data(), localAddressesStr.c_str(), localAddressesStr.size()); std::vector globalAddressesChar(64 * channelsPerRank * mpiSize, '\0'); - comm.GatherArrays(localAddressesChar.data(), 64 * channelsPerRank, - globalAddressesChar.data()); + comm.GatherArrays(localAddressesChar.data(), 64 * channelsPerRank, globalAddressesChar.data()); // Writing handshake file if (mpiRank == 0) @@ -175,8 +167,7 @@ void HandshakeWriter(Comm const &comm, size_t &appID, nlohmann::json globalAddressesJson; for (int i = 0; i < mpiSize; ++i) { - auto j = nlohmann::json::parse( - &globalAddressesChar[i * 64 * channelsPerRank]); + auto j = nlohmann::json::parse(&globalAddressesChar[i * 64 * channelsPerRank]); for (auto &i : j) { globalAddressesJson.push_back(i); @@ -194,8 +185,7 @@ void HandshakeWriter(Comm const &comm, size_t &appID, } } -void HandshakeReader(Comm const &comm, size_t &appID, - std::vector &fullAddresses, +void HandshakeReader(Comm const &comm, size_t &appID, std::vector &fullAddresses, const std::string &name, const std::string &engineName) { const std::string engineLockFilename = name + "." + engineName + ".lock"; diff --git a/source/adios2/helper/adiosNetwork.h b/source/adios2/helper/adiosNetwork.h index 1f5fcb9f03..d8e15db854 100644 --- a/source/adios2/helper/adiosNetwork.h +++ b/source/adios2/helper/adiosNetwork.h @@ -36,15 +36,12 @@ class Comm; */ std::vector AvailableIpAddresses() noexcept; -void HandshakeWriter(Comm const &comm, size_t &appID, - std::vector &fullAddresses, - const std::string &name, const std::string &engineName, - const int basePort, const int channelsPerRank, - const int maxRanksPerNode = 100, +void HandshakeWriter(Comm const &comm, size_t &appID, std::vector &fullAddresses, + const std::string &name, const std::string &engineName, const int basePort, + const int channelsPerRank, const int maxRanksPerNode = 100, const int maxAppsPerNode = 10); -void HandshakeReader(Comm const &comm, size_t &appID, - std::vector &fullAddresses, +void HandshakeReader(Comm const &comm, size_t &appID, std::vector &fullAddresses, const std::string &name, const std::string &engineName); } // end namespace helper diff --git a/source/adios2/helper/adiosPluginManager.cpp b/source/adios2/helper/adiosPluginManager.cpp index e48cb63a82..95a2d8d80c 100644 --- a/source/adios2/helper/adiosPluginManager.cpp +++ b/source/adios2/helper/adiosPluginManager.cpp @@ -76,8 +76,7 @@ PluginManager &PluginManager::GetInstance() { if (m_Destroyed) { - throw std::runtime_error( - "Dead reference to PluginManager singleton"); + throw std::runtime_error("Dead reference to PluginManager singleton"); } else { @@ -98,13 +97,10 @@ void PluginManager::SetParameters(const Params ¶ms) helper::GetParameter(params, "verbose", m_Impl->m_Verbosity); } -bool PluginManager::LoadPlugin(const std::string &pluginName, - const std::string &pluginLibrary) +bool PluginManager::LoadPlugin(const std::string &pluginName, const std::string &pluginLibrary) { - if (m_Impl->m_EngineRegistry.find(pluginName) != - m_Impl->m_EngineRegistry.end() || - m_Impl->m_OperatorRegistry.find(pluginName) != - m_Impl->m_OperatorRegistry.end()) + if (m_Impl->m_EngineRegistry.find(pluginName) != m_Impl->m_EngineRegistry.end() || + m_Impl->m_OperatorRegistry.find(pluginName) != m_Impl->m_OperatorRegistry.end()) { return true; } @@ -122,8 +118,8 @@ bool PluginManager::LoadPlugin(const std::string &pluginName, char platform_separator = ':'; #endif - auto pathsSplit = adios2sys::SystemTools::SplitString( - allPluginPaths, platform_separator, false); + auto pathsSplit = + adios2sys::SystemTools::SplitString(allPluginPaths, platform_separator, false); bool loaded = false; auto pathIt = pathsSplit.begin(); @@ -138,8 +134,8 @@ bool PluginManager::LoadPlugin(const std::string &pluginName, // this is not necessarily an error, because you could have // multiple paths in ADIOS2_PLUGIN_PATH variable helper::Log("Plugins", "PluginManager", "LoadPlugin", - std::string("OpenPlugin failed: ") + e.what(), 5, - m_Impl->m_Verbosity, helper::LogMode::INFO); + std::string("OpenPlugin failed: ") + e.what(), 5, m_Impl->m_Verbosity, + helper::LogMode::INFO); loaded = false; } ++pathIt; @@ -160,14 +156,12 @@ bool PluginManager::LoadPlugin(const std::string &pluginName, return loaded; } -bool PluginManager::OpenPlugin(const std::string &pluginName, - const std::string &pluginLibrary, +bool PluginManager::OpenPlugin(const std::string &pluginName, const std::string &pluginLibrary, const std::string &pluginPath) { helper::Log("Plugins", "PluginManager", "OpenPlugin", - "Attempting to open plugin " + pluginLibrary + " at path " + - pluginPath, - 5, m_Impl->m_Verbosity, helper::LogMode::INFO); + "Attempting to open plugin " + pluginLibrary + " at path " + pluginPath, 5, + m_Impl->m_Verbosity, helper::LogMode::INFO); std::unique_ptr binder( new helper::DynamicBinder(pluginLibrary, pluginPath)); if (auto createHandle = binder->GetSymbol("EngineCreate")) @@ -178,19 +172,17 @@ bool PluginManager::OpenPlugin(const std::string &pluginName, plugin.m_HandleCreate = reinterpret_cast(createHandle); if (!plugin.m_HandleCreate) { - helper::Throw("Plugins", "PluginManager", - "OpenPlugin", + helper::Throw("Plugins", "PluginManager", "OpenPlugin", "Unable to locate EngineCreate" " symbol in library " + pluginLibrary); } - plugin.m_HandleDestroy = reinterpret_cast( - binder->GetSymbol("EngineDestroy")); + plugin.m_HandleDestroy = + reinterpret_cast(binder->GetSymbol("EngineDestroy")); if (!plugin.m_HandleDestroy) { - helper::Throw("Plugins", "PluginManager", - "OpenPlugin", + helper::Throw("Plugins", "PluginManager", "OpenPlugin", "Unable to locate EngineDestroy" " symbol in library " + pluginLibrary); @@ -198,8 +190,8 @@ bool PluginManager::OpenPlugin(const std::string &pluginName, plugin.m_Binder = std::move(binder); m_Impl->m_EngineRegistry[pluginName] = std::move(plugin); helper::Log("Plugins", "PluginManager", "OpenPlugin", - "Engine Plugin " + pluginName + " successfully opened", 5, - m_Impl->m_Verbosity, helper::LogMode::INFO); + "Engine Plugin " + pluginName + " successfully opened", 5, m_Impl->m_Verbosity, + helper::LogMode::INFO); return true; } else if (auto createHandle = binder->GetSymbol("OperatorCreate")) @@ -207,23 +199,20 @@ bool PluginManager::OpenPlugin(const std::string &pluginName, // should be an operator plugin OperatorPluginInfo plugin; plugin.m_LibraryName = pluginLibrary; - plugin.m_HandleCreate = - reinterpret_cast(createHandle); + plugin.m_HandleCreate = reinterpret_cast(createHandle); if (!plugin.m_HandleCreate) { - helper::Throw("Plugins", "PluginManager", - "OpenPlugin", + helper::Throw("Plugins", "PluginManager", "OpenPlugin", "Unable to locate OperatorCreate" " symbol in library " + pluginLibrary); } - plugin.m_HandleDestroy = reinterpret_cast( - binder->GetSymbol("OperatorDestroy")); + plugin.m_HandleDestroy = + reinterpret_cast(binder->GetSymbol("OperatorDestroy")); if (!plugin.m_HandleDestroy) { - helper::Throw("Plugins", "PluginManager", - "OpenPlugin", + helper::Throw("Plugins", "PluginManager", "OpenPlugin", "Unable to locate OperatorDestroy" " symbol in library " + pluginLibrary); @@ -235,63 +224,55 @@ bool PluginManager::OpenPlugin(const std::string &pluginName, m_Impl->m_Verbosity, helper::LogMode::INFO); return true; } - helper::Throw( - "Plugins", "PluginManager", "OpenPlugin", - "Unable to locate Create/Destroy symbols in library " + pluginLibrary); + helper::Throw("Plugins", "PluginManager", "OpenPlugin", + "Unable to locate Create/Destroy symbols in library " + + pluginLibrary); return false; } -PluginManager::EngineCreateFun -PluginManager::GetEngineCreateFun(const std::string &name) +PluginManager::EngineCreateFun PluginManager::GetEngineCreateFun(const std::string &name) { auto pluginIt = m_Impl->m_EngineRegistry.find(name); if (pluginIt == m_Impl->m_EngineRegistry.end()) { - helper::Throw( - "Plugins", "PluginManager", "GetEngineCreateFun", - "Couldn't find engine plugin named " + name); + helper::Throw("Plugins", "PluginManager", "GetEngineCreateFun", + "Couldn't find engine plugin named " + name); } return pluginIt->second.m_HandleCreate; } -PluginManager::EngineDestroyFun -PluginManager::GetEngineDestroyFun(const std::string &name) +PluginManager::EngineDestroyFun PluginManager::GetEngineDestroyFun(const std::string &name) { auto pluginIt = m_Impl->m_EngineRegistry.find(name); if (pluginIt == m_Impl->m_EngineRegistry.end()) { - helper::Throw( - "Plugins", "PluginManager", "GetEngineDestroyFun", - "Couldn't find engine plugin named " + name); + helper::Throw("Plugins", "PluginManager", "GetEngineDestroyFun", + "Couldn't find engine plugin named " + name); } return pluginIt->second.m_HandleDestroy; } -PluginManager::OperatorCreateFun -PluginManager::GetOperatorCreateFun(const std::string &name) +PluginManager::OperatorCreateFun PluginManager::GetOperatorCreateFun(const std::string &name) { auto pluginIt = m_Impl->m_OperatorRegistry.find(name); if (pluginIt == m_Impl->m_OperatorRegistry.end()) { - helper::Throw( - "Plugins", "PluginManager", "GetOperatorCreateFun", - "Couldn't find operator plugin named " + name); + helper::Throw("Plugins", "PluginManager", "GetOperatorCreateFun", + "Couldn't find operator plugin named " + name); } return pluginIt->second.m_HandleCreate; } -PluginManager::OperatorDestroyFun -PluginManager::GetOperatorDestroyFun(const std::string &name) +PluginManager::OperatorDestroyFun PluginManager::GetOperatorDestroyFun(const std::string &name) { auto pluginIt = m_Impl->m_OperatorRegistry.find(name); if (pluginIt == m_Impl->m_OperatorRegistry.end()) { - helper::Throw( - "Plugins", "PluginManager", "GetOperatorDestroyFun", - "Couldn't find operator plugin named " + name); + helper::Throw("Plugins", "PluginManager", "GetOperatorDestroyFun", + "Couldn't find operator plugin named " + name); } return pluginIt->second.m_HandleDestroy; diff --git a/source/adios2/helper/adiosPluginManager.h b/source/adios2/helper/adiosPluginManager.h index d503d30e77..cb30e7de83 100644 --- a/source/adios2/helper/adiosPluginManager.h +++ b/source/adios2/helper/adiosPluginManager.h @@ -29,21 +29,14 @@ class PluginManager public: using EngineCreatePtr = std::add_pointer::type; - using EngineDestroyPtr = - std::add_pointer::type; - using EngineCreateFun = - std::function::type>; - using EngineDestroyFun = - std::function::type>; - - using OperatorCreatePtr = - std::add_pointer::type; - using OperatorDestroyPtr = - std::add_pointer::type; - using OperatorCreateFun = - std::function::type>; - using OperatorDestroyFun = - std::function::type>; + using EngineDestroyPtr = std::add_pointer::type; + using EngineCreateFun = std::function::type>; + using EngineDestroyFun = std::function::type>; + + using OperatorCreatePtr = std::add_pointer::type; + using OperatorDestroyPtr = std::add_pointer::type; + using OperatorCreateFun = std::function::type>; + using OperatorDestroyFun = std::function::type>; static PluginManager &GetInstance(); @@ -53,8 +46,7 @@ class PluginManager * Attempts to load a single plugin specified by pluginName and * pluginLibrary. */ - bool LoadPlugin(const std::string &pluginName, - const std::string &pluginLibrary); + bool LoadPlugin(const std::string &pluginName, const std::string &pluginLibrary); EngineCreateFun GetEngineCreateFun(const std::string &name); EngineDestroyFun GetEngineDestroyFun(const std::string &name); @@ -70,8 +62,7 @@ class PluginManager static void CreateInstance(); - bool OpenPlugin(const std::string &pluginName, - const std::string &pluginLibrary, + bool OpenPlugin(const std::string &pluginName, const std::string &pluginLibrary, const std::string &pluginPath); static PluginManager *m_Instance; diff --git a/source/adios2/helper/adiosRangeFilter.cpp b/source/adios2/helper/adiosRangeFilter.cpp index 2cf89f3e43..f2c46e9c5f 100644 --- a/source/adios2/helper/adiosRangeFilter.cpp +++ b/source/adios2/helper/adiosRangeFilter.cpp @@ -121,8 +121,7 @@ bool RangeFilter::IsSelected(size_t n) { for (auto u : m_UnlimitedRules) { - size_t k = - n - u.first; // > 0 beacuse u.first was placed in m_Selection + size_t k = n - u.first; // > 0 beacuse u.first was placed in m_Selection if (k % u.second == 0) { return true; @@ -142,16 +141,15 @@ size_t RangeFilter::ToSizeT(const std::string &input) } catch (...) { - helper::ThrowNested( - "Helper", "adiosRangeFilter", "ToSizeT", - "could not cast string '" + input + "' to number "); + helper::ThrowNested("Helper", "adiosRangeFilter", "ToSizeT", + "could not cast string '" + input + + "' to number "); } if (value < 0L) { - helper::ThrowNested( - "Helper", "adiosRangeFilter", "ToSizeT", - "Negative number '" + input + - "' not supported in range selections!"); + helper::ThrowNested("Helper", "adiosRangeFilter", "ToSizeT", + "Negative number '" + input + + "' not supported in range selections!"); } if (pos < input.size()) { diff --git a/source/adios2/helper/adiosString.cpp b/source/adios2/helper/adiosString.cpp index 51e05b2853..e160899404 100644 --- a/source/adios2/helper/adiosString.cpp +++ b/source/adios2/helper/adiosString.cpp @@ -31,9 +31,8 @@ std::string FileToString(const std::string &fileName, const std::string hint) if (!fileStream) { - helper::Throw( - "Helper", "adiosString", "FileToString", - "file " + fileName + " not found, " + hint); + helper::Throw("Helper", "adiosString", "FileToString", + "file " + fileName + " not found, " + hint); } std::ostringstream fileSS; @@ -42,25 +41,23 @@ std::string FileToString(const std::string &fileName, const std::string hint) return fileSS.str(); } -Params BuildParametersMap(const std::vector ¶meters, - const char delimKeyValue) +Params BuildParametersMap(const std::vector ¶meters, const char delimKeyValue) { auto lf_Trim = [](std::string &input) { input.erase(0, input.find_first_not_of(" \n\r\t")); // prefixing spaces input.erase(input.find_last_not_of(" \n\r\t") + 1); // suffixing spaces }; - auto lf_GetFieldValue = [](const std::string parameter, std::string &field, - std::string &value, const char delimKeyValue) { + auto lf_GetFieldValue = [](const std::string parameter, std::string &field, std::string &value, + const char delimKeyValue) { auto equalPosition = parameter.find(delimKeyValue); if (equalPosition == parameter.npos) { - helper::Throw( - "Helper", "adiosString", "BuildParametersMap", - "wrong format for IO parameter " + parameter + - ", format must be key" + delimKeyValue + - "value for each entry"); + helper::Throw("Helper", "adiosString", "BuildParametersMap", + "wrong format for IO parameter " + parameter + + ", format must be key" + delimKeyValue + + "value for each entry"); } field = parameter.substr(0, equalPosition); @@ -79,16 +76,16 @@ Params BuildParametersMap(const std::vector ¶meters, if (value.length() == 0) { - helper::Throw( - "Helper", "adiosString", "BuildParametersMap", - "empty value in IO parameter " + parameter + - ", format must be key" + delimKeyValue + "value"); + helper::Throw("Helper", "adiosString", "BuildParametersMap", + "empty value in IO parameter " + parameter + + ", format must be key" + delimKeyValue + + "value"); } if (parametersOutput.count(field) == 1) { - helper::Throw( - "Helper", "adiosString", "BuildParametersMap", - "parameter " + field + " already exists, must be unique"); + helper::Throw("Helper", "adiosString", "BuildParametersMap", + "parameter " + field + + " already exists, must be unique"); } parametersOutput[field] = value; @@ -97,8 +94,7 @@ Params BuildParametersMap(const std::vector ¶meters, return parametersOutput; } -Params BuildParametersMap(const std::string &input, const char delimKeyValue, - const char delimItem) +Params BuildParametersMap(const std::string &input, const char delimKeyValue, const char delimItem) { auto lf_Trim = [](std::string &input) { input.erase(0, input.find_first_not_of(" \n\r\t")); // prefixing spaces @@ -114,11 +110,10 @@ Params BuildParametersMap(const std::string &input, const char delimKeyValue, const size_t position = parameter.find(delimKeyValue); if (position == parameter.npos) { - helper::Throw( - "Helper", "adiosString", "BuildParametersMap", - "wrong format for IO parameter " + parameter + - ", format must be key" + delimKeyValue + - "value for each entry"); + helper::Throw("Helper", "adiosString", "BuildParametersMap", + "wrong format for IO parameter " + parameter + + ", format must be key" + delimKeyValue + + "value for each entry"); } std::string key = parameter.substr(0, position); @@ -127,17 +122,16 @@ Params BuildParametersMap(const std::string &input, const char delimKeyValue, lf_Trim(value); if (value.length() == 0) { - helper::Throw( - "Helper", "adiosString", "BuildParametersMap", - "empty value in IO parameter " + parameter + - ", format must be key" + delimKeyValue + "value"); + helper::Throw("Helper", "adiosString", "BuildParametersMap", + "empty value in IO parameter " + parameter + + ", format must be key" + delimKeyValue + + "value"); } if (parametersOutput.count(key) == 1) { helper::Throw( "Helper", "adiosString", "BuildParametersMap", - "key " + key + - " appears multiple times in the parameters string"); + "key " + key + " appears multiple times in the parameters string"); } parametersOutput[key] = value; @@ -146,8 +140,7 @@ Params BuildParametersMap(const std::string &input, const char delimKeyValue, return parametersOutput; } -std::string AddExtension(const std::string &name, - const std::string extension) noexcept +std::string AddExtension(const std::string &name, const std::string extension) noexcept { std::string result(name); if (name.find(extension) != name.size() - 3) @@ -157,23 +150,20 @@ std::string AddExtension(const std::string &name, return result; } -bool EndsWith(const std::string &str, const std::string &ending, - const bool caseSensitive) +bool EndsWith(const std::string &str, const std::string &ending, const bool caseSensitive) { if (str.length() >= ending.length()) { if (caseSensitive) { - return (!str.compare(str.length() - ending.length(), - ending.length(), ending)); + return (!str.compare(str.length() - ending.length(), ending.length(), ending)); } else { const std::string strLC = LowerCase(str); const std::string endLC = LowerCase(ending); - return (!strLC.compare(strLC.length() - endLC.length(), - endLC.length(), endLC)); + return (!strLC.compare(strLC.length() - endLC.length(), endLC.length(), endLC)); } } else @@ -182,9 +172,8 @@ bool EndsWith(const std::string &str, const std::string &ending, } } -std::vector -GetParametersValues(const std::string &key, - const std::vector ¶metersVector) noexcept +std::vector GetParametersValues(const std::string &key, + const std::vector ¶metersVector) noexcept { std::vector values; values.reserve(parametersVector.size()); @@ -203,8 +192,7 @@ GetParametersValues(const std::string &key, return values; } -void SetParameterValue(const std::string key, const Params ¶meters, - std::string &value) noexcept +void SetParameterValue(const std::string key, const Params ¶meters, std::string &value) noexcept { auto itKey = parameters.find(key); if (itKey != parameters.end()) @@ -213,8 +201,8 @@ void SetParameterValue(const std::string key, const Params ¶meters, } } -std::string GetParameter(const std::string key, const Params ¶ms, - const bool isMandatory, const std::string hint) +std::string GetParameter(const std::string key, const Params ¶ms, const bool isMandatory, + const std::string hint) { std::string value; auto itParameter = params.find(key); @@ -222,9 +210,9 @@ std::string GetParameter(const std::string key, const Params ¶ms, { if (isMandatory) { - helper::Throw( - "Helper", "adiosString", "GetParameter", - "mandatory parameter " + key + " not found, " + hint); + helper::Throw("Helper", "adiosString", "GetParameter", + "mandatory parameter " + key + " not found, " + + hint); } } else @@ -235,8 +223,7 @@ std::string GetParameter(const std::string key, const Params ¶ms, } template <> -bool GetParameter(const Params ¶ms, const std::string &key, - std::string &value) +bool GetParameter(const Params ¶ms, const std::string &key, std::string &value) { auto it = params.find(key); if (it != params.end()) @@ -264,9 +251,9 @@ bool GetParameter(const Params ¶ms, const std::string &key, int &value) } catch (...) { - helper::Throw( - "Helper", "adiosString", "GetParameter", - "Engine parameter " + key + " can only be integer numbers"); + helper::Throw("Helper", "adiosString", "GetParameter", + "Engine parameter " + key + + " can only be integer numbers"); } } return true; @@ -288,9 +275,9 @@ bool GetParameter(const Params ¶ms, const std::string &key, uint64_t &value) } catch (...) { - helper::Throw( - "Helper", "adiosString", "GetParameter", - "Engine parameter " + key + " can only be integer numbers"); + helper::Throw("Helper", "adiosString", "GetParameter", + "Engine parameter " + key + + " can only be integer numbers"); } } return true; @@ -312,9 +299,9 @@ bool GetParameter(const Params ¶ms, const std::string &key, float &value) } catch (...) { - helper::Throw( - "Helper", "adiosString", "GetParameter", - "Engine parameter " + key + " can only be float numbers"); + helper::Throw("Helper", "adiosString", "GetParameter", + "Engine parameter " + key + + " can only be float numbers"); } } return true; @@ -327,8 +314,7 @@ bool GetParameter(const Params ¶ms, const std::string &key, bool &value) if (it != params.end()) { std::string valueStr = it->second; - std::transform(valueStr.begin(), valueStr.end(), valueStr.begin(), - ::tolower); + std::transform(valueStr.begin(), valueStr.end(), valueStr.begin(), ::tolower); if (valueStr == "yes" || valueStr == "true") { value = true; @@ -342,8 +328,8 @@ bool GetParameter(const Params ¶ms, const std::string &key, bool &value) return false; } -void SetParameterValueInt(const std::string key, const Params ¶meters, - int &value, const std::string &hint) +void SetParameterValueInt(const std::string key, const Params ¶meters, int &value, + const std::string &hint) { auto itKey = parameters.find(key); if (itKey == parameters.end()) @@ -363,8 +349,7 @@ void SetParameterValueInt(const std::string key, const Params ¶meters, std::string DimsToString(const Dims &dimensions) { - std::string dimensionsString("Dims(" + std::to_string(dimensions.size()) + - "):["); + std::string dimensionsString("Dims(" + std::to_string(dimensions.size()) + "):["); for (const auto dimension : dimensions) { @@ -466,9 +451,8 @@ Params LowerCaseParams(const Params ¶ms) return lower_case_params; } -std::set -PrefixMatches(const std::string &prefix, - const std::set &inputs) noexcept +std::set PrefixMatches(const std::string &prefix, + const std::set &inputs) noexcept { std::set outputs; auto itPrefix = inputs.lower_bound(prefix); diff --git a/source/adios2/helper/adiosString.h b/source/adios2/helper/adiosString.h index 08850e590d..cba94dd2b1 100644 --- a/source/adios2/helper/adiosString.h +++ b/source/adios2/helper/adiosString.h @@ -55,8 +55,7 @@ Params BuildParametersMap(const std::vector ¶meters, * key2=value2, ..." * @return a map with unique key/value pairs */ -Params BuildParametersMap(const std::string &input, - const char delimKeyValue = '=', +Params BuildParametersMap(const std::string &input, const char delimKeyValue = '=', const char delimItem = ','); /** @@ -66,8 +65,7 @@ Params BuildParametersMap(const std::string &input, * @return if name already has extension returns name (name.bp), otherwise * returns name.extension (name.bp) */ -std::string AddExtension(const std::string &name, - const std::string extension) noexcept; +std::string AddExtension(const std::string &name, const std::string extension) noexcept; /** * Check if a string ends with another substring @@ -76,8 +74,7 @@ std::string AddExtension(const std::string &name, * @param caseSensitive input flag * @return true if the 'str' string ends with the string 'ending' */ -bool EndsWith(const std::string &str, const std::string &ending, - const bool caseSensitive = true); +bool EndsWith(const std::string &str, const std::string &ending, const bool caseSensitive = true); /** * Get values for each param entry of a certain key in a vector. @@ -86,9 +83,8 @@ bool EndsWith(const std::string &str, const std::string &ending, * @param parametersVector * @return vector of values, from key,value in parametersVector */ -std::vector -GetParametersValues(const std::string &key, - const std::vector ¶metersVector) noexcept; +std::vector GetParametersValues(const std::string &key, + const std::vector ¶metersVector) noexcept; /** * Searches key and assign value from parameters map @@ -119,12 +115,12 @@ bool GetParameter(const Params ¶ms, const std::string &key, T &value); * @param value to be modified if key is found in parameters * @param hint passed for extra debugging info if exception is thrown */ -void SetParameterValueInt(const std::string key, const Params ¶meters, - int &value, const std::string &hint); +void SetParameterValueInt(const std::string key, const Params ¶meters, int &value, + const std::string &hint); template -void SetParameterValue(const std::string key, const Params ¶meters, - T &value, const std::string &hint); +void SetParameterValue(const std::string key, const Params ¶meters, T &value, + const std::string &hint); /** * Returns a single string with dimension values @@ -188,9 +184,8 @@ Params LowerCaseParams(const Params ¶ms); * @param inputs input names * @return all names with prefix "pre": pre1, pre2, ..., preXYZ, */ -std::set -PrefixMatches(const std::string &prefix, - const std::set &inputs) noexcept; +std::set PrefixMatches(const std::string &prefix, + const std::set &inputs) noexcept; /** * Remove a trailing path separator character at the end of the string. diff --git a/source/adios2/helper/adiosString.tcc b/source/adios2/helper/adiosString.tcc index 0e25e9171d..abdb7ab63b 100644 --- a/source/adios2/helper/adiosString.tcc +++ b/source/adios2/helper/adiosString.tcc @@ -35,8 +35,7 @@ template <> std::set LowerCase(const std::set &input) { std::set output; - std::transform(input.begin(), input.end(), - std::inserter(output, output.begin()), + std::transform(input.begin(), input.end(), std::inserter(output, output.begin()), [](const std::string &in) { return LowerCase(in); }); return output; } @@ -59,8 +58,7 @@ bool StringTo(const std::string &input, const std::string &hint) { helper::Throw( "Helper", "adiosString", "StringTo", - "invalid input value: " + input + - " for on/off or true/false bool conversion " + hint); + "invalid input value: " + input + " for on/off or true/false bool conversion " + hint); } return result; } @@ -76,8 +74,7 @@ int32_t StringTo(const std::string &input, const std::string &hint) catch (...) { helper::ThrowNested( - "Helper", "adiosString", "StringTo", - "could not cast " + input + " to int32_t " + hint); + "Helper", "adiosString", "StringTo", "could not cast " + input + " to int32_t " + hint); } return 0; } @@ -92,9 +89,9 @@ uint32_t StringTo(const std::string &input, const std::string &hint) } catch (...) { - helper::ThrowNested( - "Helper", "adiosString", "StringTo", - "could not cast " + input + " to uint32_t " + hint); + helper::ThrowNested("Helper", "adiosString", "StringTo", + "could not cast " + input + " to uint32_t " + + hint); } return 0; } @@ -110,8 +107,7 @@ int64_t StringTo(const std::string &input, const std::string &hint) catch (...) { helper::ThrowNested( - "Helper", "adiosString", "StringTo", - "could not cast " + input + " to int64_t " + hint); + "Helper", "adiosString", "StringTo", "could not cast " + input + " to int64_t " + hint); } return 0; } @@ -126,9 +122,9 @@ uint64_t StringTo(const std::string &input, const std::string &hint) } catch (...) { - helper::ThrowNested( - "Helper", "adiosString", "StringTo", - "could not cast " + input + " to uint64_t " + hint); + helper::ThrowNested("Helper", "adiosString", "StringTo", + "could not cast " + input + " to uint64_t " + + hint); } return 0; } @@ -143,9 +139,8 @@ float StringTo(const std::string &input, const std::string &hint) } catch (...) { - helper::ThrowNested( - "Helper", "adiosString", "StringTo", - "could not cast " + input + " to float " + hint); + helper::ThrowNested("Helper", "adiosString", "StringTo", + "could not cast " + input + " to float " + hint); } return 0; } @@ -161,8 +156,7 @@ double StringTo(const std::string &input, const std::string &hint) catch (...) { helper::ThrowNested( - "Helper", "adiosString", "StringTo", - "could not cast " + input + " to double " + hint); + "Helper", "adiosString", "StringTo", "could not cast " + input + " to double " + hint); } return 0; } diff --git a/source/adios2/helper/adiosSystem.cpp b/source/adios2/helper/adiosSystem.cpp index e3e5d79a01..fe6008b2a3 100644 --- a/source/adios2/helper/adiosSystem.cpp +++ b/source/adios2/helper/adiosSystem.cpp @@ -57,8 +57,7 @@ std::string LocalTimeDate() noexcept struct tm now_tm; char buf[30]; - std::time_t now = - std::chrono::system_clock::to_time_t(std::chrono::system_clock::now()); + std::time_t now = std::chrono::system_clock::to_time_t(std::chrono::system_clock::now()); #ifdef _WIN32 localtime_s(&now_tm, &now); @@ -74,8 +73,7 @@ bool IsRowMajor(const std::string hostLanguage) noexcept { bool isRowMajor = true; - if (hostLanguage == "Fortran" || hostLanguage == "R" || - hostLanguage == "Matlab") + if (hostLanguage == "Fortran" || hostLanguage == "R" || hostLanguage == "Matlab") { isRowMajor = false; } @@ -102,26 +100,26 @@ int ExceptionToError(const std::string &function) } catch (std::invalid_argument &e) { - helper::Log("Helper", "adiosSystem", "ExceptionToError", - function + ": " + e.what(), helper::FATALERROR); + helper::Log("Helper", "adiosSystem", "ExceptionToError", function + ": " + e.what(), + helper::FATALERROR); return 1; } catch (std::system_error &e) { - helper::Log("Helper", "adiosSystem", "ExceptionToError", - function + ": " + e.what(), helper::FATALERROR); + helper::Log("Helper", "adiosSystem", "ExceptionToError", function + ": " + e.what(), + helper::FATALERROR); return 2; } catch (std::runtime_error &e) { - helper::Log("Helper", "adiosSystem", "ExceptionToError", - function + ": " + e.what(), helper::FATALERROR); + helper::Log("Helper", "adiosSystem", "ExceptionToError", function + ": " + e.what(), + helper::FATALERROR); return 3; } catch (std::exception &e) { - helper::Log("Helper", "adiosSystem", "ExceptionToError", - function + ": " + e.what(), helper::FATALERROR); + helper::Log("Helper", "adiosSystem", "ExceptionToError", function + ": " + e.what(), + helper::FATALERROR); return 4; } } @@ -139,16 +137,13 @@ bool IsHDF5File(const std::string &name, core::IO &io, helper::Comm &comm, { std::vector defaultTransportParameters(1); defaultTransportParameters[0]["transport"] = "File"; - tm.OpenFiles({name}, adios2::Mode::Read, - defaultTransportParameters, false); + tm.OpenFiles({name}, adios2::Mode::Read, defaultTransportParameters, false); } else { - tm.OpenFiles({name}, adios2::Mode::Read, transportsParameters, - false); + tm.OpenFiles({name}, adios2::Mode::Read, transportsParameters, false); } - const unsigned char HDF5Header[8] = {137, 72, 68, 70, - 13, 10, 26, 10}; + const unsigned char HDF5Header[8] = {137, 72, 68, 70, 13, 10, 26, 10}; if (tm.GetFileSize(0) >= 8) { char header[8]; @@ -187,10 +182,7 @@ char BPVersion(const std::string &name, helper::Comm &comm, return version; } -unsigned int NumHardwareThreadsPerNode() -{ - return std::thread::hardware_concurrency(); -} +unsigned int NumHardwareThreadsPerNode() { return std::thread::hardware_concurrency(); } size_t RaiseLimitNoFile() { @@ -230,9 +222,8 @@ size_t RaiseLimitNoFile() if (err) { - std::cerr << "adios2::helper::RaiseLimitNoFile(soft=" - << limit.rlim_cur << ", hard=" << limit.rlim_max - << ") failed with error code " << errno << ": " + std::cerr << "adios2::helper::RaiseLimitNoFile(soft=" << limit.rlim_cur + << ", hard=" << limit.rlim_max << ") failed with error code " << errno << ": " << strerror(errno) << std::endl; } firstCallRaiseLimit = false; diff --git a/source/adios2/helper/adiosType.cpp b/source/adios2/helper/adiosType.cpp index bd14b44dc2..0a2817734e 100644 --- a/source/adios2/helper/adiosType.cpp +++ b/source/adios2/helper/adiosType.cpp @@ -93,10 +93,10 @@ DataType GetDataTypeFromString(std::string const &type) noexcept size_t GetDataTypeSize(DataType type) { -#define declare_type(T) \ - if (type == helper::GetDataType()) \ - { \ - return sizeof(T); \ +#define declare_type(T) \ + if (type == helper::GetDataType()) \ + { \ + return sizeof(T); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -178,8 +178,7 @@ std::vector Uint64ArrayToSizetVector(const size_t nElements, return out; } -std::vector -Uint64VectorToSizetVector(const std::vector &in) noexcept +std::vector Uint64VectorToSizetVector(const std::vector &in) noexcept { std::vector out(in.size()); std::transform(in.begin(), in.end(), out.begin(), @@ -187,8 +186,7 @@ Uint64VectorToSizetVector(const std::vector &in) noexcept return out; } -TimeUnit StringToTimeUnit(const std::string timeUnitString, - const std::string hint) +TimeUnit StringToTimeUnit(const std::string timeUnitString, const std::string hint) { TimeUnit timeUnit = TimeUnit::Microseconds; // default @@ -196,8 +194,7 @@ TimeUnit StringToTimeUnit(const std::string timeUnitString, { timeUnit = TimeUnit::Microseconds; } - else if (timeUnitString == "Milliseconds" || - timeUnitString == "milliseconds") + else if (timeUnitString == "Milliseconds" || timeUnitString == "milliseconds") { timeUnit = TimeUnit::Milliseconds; } @@ -215,13 +212,12 @@ TimeUnit StringToTimeUnit(const std::string timeUnitString, } else { - helper::Throw( - "Helper", "adiosType", "StringToTimeUnit", - "invalid value " + timeUnitString + - " in Parameter key=ProfileUnits, " - " must be Microseconds, Milliseconds, " - "Seconds, Minutes or Hours " + - hint); + helper::Throw("Helper", "adiosType", "StringToTimeUnit", + "invalid value " + timeUnitString + + " in Parameter key=ProfileUnits, " + " must be Microseconds, Milliseconds, " + "Seconds, Minutes or Hours " + + hint); } return timeUnit; } @@ -247,9 +243,9 @@ size_t BytesFactor(const std::string units) } else { - helper::Throw( - "Helper", "adiosType", "BytesFactor", - "units " + units + " not supported in call to BytesFactor"); + helper::Throw("Helper", "adiosType", "BytesFactor", + "units " + units + + " not supported in call to BytesFactor"); } return factor; } diff --git a/source/adios2/helper/adiosType.h b/source/adios2/helper/adiosType.h index c7828e3098..24f360d524 100644 --- a/source/adios2/helper/adiosType.h +++ b/source/adios2/helper/adiosType.h @@ -49,8 +49,7 @@ struct SubFileInfo * value : file seek box: first = seekStart, second = seekCount * */ -using SubFileInfoMap = - std::map>>; +using SubFileInfoMap = std::map>>; struct BlockOperationInfo { @@ -116,14 +115,8 @@ class CoreDims // memory remains valid as long as it is necessary. If you don't // know the memory will be valid the entire time, use the // DimsArray class which copies the dimension data. - CoreDims(std::vector vec) - : DimCount(vec.size()), DimensSpan(vec.data()) - { - } - CoreDims(size_t count, size_t *span_val) - : DimCount(count), DimensSpan(span_val) - { - } + CoreDims(std::vector vec) : DimCount(vec.size()), DimensSpan(vec.data()) {} + CoreDims(size_t count, size_t *span_val) : DimCount(count), DimensSpan(span_val) {} size_t size() const { return DimCount; } bool empty() const { return DimCount == 0; } @@ -157,8 +150,7 @@ class DimsArray : public CoreDims DimsArray(const size_t count) : CoreDims(count, &Dimensions[0]) {} // constructor with single init value - DimsArray(const size_t count, const size_t init) - : CoreDims(count, &Dimensions[0]) + DimsArray(const size_t count, const size_t init) : CoreDims(count, &Dimensions[0]) { for (size_t i = 0; i < count; i++) { @@ -166,8 +158,7 @@ class DimsArray : public CoreDims } } // constructor from vector - DimsArray(const std::vector vec) - : CoreDims(vec.size(), &Dimensions[0]) + DimsArray(const std::vector vec) : CoreDims(vec.size(), &Dimensions[0]) { for (size_t i = 0; i < vec.size(); i++) { @@ -175,8 +166,7 @@ class DimsArray : public CoreDims } } // constructor from address - DimsArray(const size_t count, const size_t *arr) - : CoreDims(count, &Dimensions[0]) + DimsArray(const size_t count, const size_t *arr) : CoreDims(count, &Dimensions[0]) { for (size_t i = 0; i < count; i++) { @@ -239,16 +229,14 @@ void Uint64ArrayToSizetVector(const size_t nElements, const uint64_t *in, * @param input array of uint64_t elements * @return vector of std::size_t elements */ -std::vector Uint64ArrayToSizetVector(const size_t nElements, - const uint64_t *in) noexcept; +std::vector Uint64ArrayToSizetVector(const size_t nElements, const uint64_t *in) noexcept; /** * Converts a recognized time unit string to TimeUnit enum * @param timeUnit string with acceptable time unit * @return TimeUnit enum (int) TimeUnit::s, TimeUnit::ms, etc. */ -TimeUnit StringToTimeUnit(const std::string timeUnitString, - const std::string hint = ""); +TimeUnit StringToTimeUnit(const std::string timeUnitString, const std::string hint = ""); /** * Returns the conversion factor from input units Tb, Gb, Mb, Kb, to bytes as a @@ -264,8 +252,7 @@ size_t BytesFactor(const std::string units); * @param oneLetter if true returns a one letter version ("w", "a" or "r") * @return string with open mode */ -std::string OpenModeToString(const Mode openMode, - const bool oneLetter = false) noexcept; +std::string OpenModeToString(const Mode openMode, const bool oneLetter = false) noexcept; template std::vector NewVectorType(const std::vector &in); diff --git a/source/adios2/helper/adiosXML.cpp b/source/adios2/helper/adiosXML.cpp index 440dd27611..a1595fcefb 100644 --- a/source/adios2/helper/adiosXML.cpp +++ b/source/adios2/helper/adiosXML.cpp @@ -30,23 +30,19 @@ namespace adios2 namespace helper { -void ParseConfigXML( - core::ADIOS &adios, const std::string &configFileXML, - std::map &ios, - std::unordered_map> &operators) +void ParseConfigXML(core::ADIOS &adios, const std::string &configFileXML, + std::map &ios, + std::unordered_map> &operators) { - const std::string hint("for config file " + configFileXML + - " in call to ADIOS constructor"); + const std::string hint("for config file " + configFileXML + " in call to ADIOS constructor"); auto lf_FileContents = [&](const std::string &configXML) -> std::string { const std::string fileContents(adios.GetComm().BroadcastFile( - configXML, - "when parsing configXML file, in call to the ADIOS constructor")); + configXML, "when parsing configXML file, in call to the ADIOS constructor")); if (fileContents.empty()) { - helper::Throw("Helper", "AdiosXML", - "ParseConfigXML", + helper::Throw("Helper", "AdiosXML", "ParseConfigXML", "empty config xml file"); } return fileContents; @@ -60,8 +56,8 @@ void ParseConfigXML( helper::XMLAttribute("type", operatorNode, hint); std::string typeLowerCase = std::string(type->value()); - std::transform(typeLowerCase.begin(), typeLowerCase.end(), - typeLowerCase.begin(), ::tolower); + std::transform(typeLowerCase.begin(), typeLowerCase.end(), typeLowerCase.begin(), + ::tolower); const Params parameters = helper::XMLGetParameters(operatorNode, hint); @@ -69,8 +65,7 @@ void ParseConfigXML( }; // node is the variable node - auto lf_IOVariableXML = [&](const pugi::xml_node &node, - core::IO ¤tIO) { + auto lf_IOVariableXML = [&](const pugi::xml_node &node, core::IO ¤tIO) { const std::string variableName = std::string(helper::XMLAttribute("name", node, hint)->value()); @@ -86,8 +81,8 @@ void ParseConfigXML( { helper::Throw( "Helper", "AdiosXML", "ParseConfigXML", - "operator (" + std::string(opName->value()) + - ") and type (" + std::string(opType->value()) + + "operator (" + std::string(opName->value()) + ") and type (" + + std::string(opType->value()) + ") attributes can't coexist in element " "inside element"); @@ -115,8 +110,8 @@ void ParseConfigXML( helper::Throw( "Helper", "AdiosXML", "ParseConfigXML", "operator " + std::string(opName->value()) + - " not previously defined, from variable " + - variableName + " inside io " + currentIO.m_Name); + " not previously defined, from variable " + variableName + + " inside io " + currentIO.m_Name); } type = itOperator->second.first; params = itOperator->second.second; @@ -132,20 +127,17 @@ void ParseConfigXML( params[p.first] = p.second; } - currentIO.m_VarOpsPlaceholder[variableName].push_back( - {type, params}); + currentIO.m_VarOpsPlaceholder[variableName].push_back({type, params}); } }; auto lf_IOXML = [&](const pugi::xml_node &io) { - const std::unique_ptr ioName = - helper::XMLAttribute("name", io, hint); + const std::unique_ptr ioName = helper::XMLAttribute("name", io, hint); // Build the IO object - auto itCurrentIO = ios.emplace( - std::piecewise_construct, std::forward_as_tuple(ioName->value()), - std::forward_as_tuple(adios, ioName->value(), true, - adios.m_HostLanguage)); + auto itCurrentIO = + ios.emplace(std::piecewise_construct, std::forward_as_tuple(ioName->value()), + std::forward_as_tuple(adios, ioName->value(), true, adios.m_HostLanguage)); core::IO ¤tIO = itCurrentIO.first->second; // must be unique per io @@ -179,8 +171,7 @@ void ParseConfigXML( // BODY OF FUNCTION const std::string fileContents = lf_FileContents(configFileXML); - const std::unique_ptr document = - helper::XMLDocument(fileContents, hint); + const std::unique_ptr document = helper::XMLDocument(fileContents, hint); // must be unique const std::unique_ptr config = diff --git a/source/adios2/helper/adiosXML.h b/source/adios2/helper/adiosXML.h index b97ad85c44..2c7aff26fe 100644 --- a/source/adios2/helper/adiosXML.h +++ b/source/adios2/helper/adiosXML.h @@ -26,10 +26,9 @@ namespace adios2 namespace helper { -void ParseConfigXML( - core::ADIOS &adios, const std::string &configFile, - std::map &ios, - std::unordered_map> &operators); +void ParseConfigXML(core::ADIOS &adios, const std::string &configFile, + std::map &ios, + std::unordered_map> &operators); } // end namespace helper } // end namespace adios2 diff --git a/source/adios2/helper/adiosXMLUtil.cpp b/source/adios2/helper/adiosXMLUtil.cpp index 80d31dd3b0..c15e60333c 100644 --- a/source/adios2/helper/adiosXMLUtil.cpp +++ b/source/adios2/helper/adiosXMLUtil.cpp @@ -26,70 +26,65 @@ std::unique_ptr XMLDocument(const std::string &xmlContents, const std::string hint) { std::unique_ptr document(new pugi::xml_document); - auto parse_result = document->load_buffer_inplace( - const_cast(xmlContents.data()), xmlContents.size()); + auto parse_result = + document->load_buffer_inplace(const_cast(xmlContents.data()), xmlContents.size()); if (!parse_result) { helper::Throw( "Helper", "adiosXMLUtil", "XMLDocument", - "parse error in XML string, description: " + - std::string(parse_result.description()) + + "parse error in XML string, description: " + std::string(parse_result.description()) + ", check with any XML editor if format is ill-formed, " + hint); } return document; } -std::unique_ptr -XMLNode(const std::string nodeName, const pugi::xml_document &xmlDocument, - const std::string hint, const bool isMandatory, const bool isUnique) +std::unique_ptr XMLNode(const std::string nodeName, + const pugi::xml_document &xmlDocument, + const std::string hint, const bool isMandatory, + const bool isUnique) { - std::unique_ptr node( - new pugi::xml_node(xmlDocument.child(nodeName.c_str()))); + std::unique_ptr node(new pugi::xml_node(xmlDocument.child(nodeName.c_str()))); if (isMandatory && !node) { - helper::Throw( - "Helper", "adiosXMLUtil", "XMLNode", - "no <" + nodeName + "> element found, " + hint); + helper::Throw("Helper", "adiosXMLUtil", "XMLNode", + "no <" + nodeName + "> element found, " + hint); } if (isUnique) { - const size_t nodes = - std::distance(xmlDocument.children(nodeName.c_str()).begin(), - xmlDocument.children(nodeName.c_str()).end()); + const size_t nodes = std::distance(xmlDocument.children(nodeName.c_str()).begin(), + xmlDocument.children(nodeName.c_str()).end()); if (nodes > 1) { - helper::Throw( - "Helper", "adiosXMLUtil", "XMLNode", - "XML only one <" + nodeName + "> element can exist inside " + - std::string(xmlDocument.name()) + ", " + hint); + helper::Throw("Helper", "adiosXMLUtil", "XMLNode", + "XML only one <" + nodeName + + "> element can exist inside " + + std::string(xmlDocument.name()) + ", " + hint); } } return node; } -std::unique_ptr -XMLNode(const std::string nodeName, const pugi::xml_node &upperNode, - const std::string hint, const bool isMandatory, const bool isUnique) +std::unique_ptr XMLNode(const std::string nodeName, const pugi::xml_node &upperNode, + const std::string hint, const bool isMandatory, + const bool isUnique) { - std::unique_ptr node( - new pugi::xml_node(upperNode.child(nodeName.c_str()))); + std::unique_ptr node(new pugi::xml_node(upperNode.child(nodeName.c_str()))); if (isMandatory && !node) { - helper::Throw( - "Helper", "adiosXMLUtil", "XMLNode", - "no <" + nodeName + "> element found, inside <" + - std::string(upperNode.name()) + "> element " + hint); + helper::Throw("Helper", "adiosXMLUtil", "XMLNode", + "no <" + nodeName + "> element found, inside <" + + std::string(upperNode.name()) + "> element " + + hint); } if (isUnique) { - const size_t nodes = - std::distance(upperNode.children(nodeName.c_str()).begin(), - upperNode.children(nodeName.c_str()).end()); + const size_t nodes = std::distance(upperNode.children(nodeName.c_str()).begin(), + upperNode.children(nodeName.c_str()).end()); if (nodes > 1) { helper::Throw( @@ -101,9 +96,9 @@ XMLNode(const std::string nodeName, const pugi::xml_node &upperNode, return node; } -std::unique_ptr -XMLAttribute(const std::string attributeName, const pugi::xml_node &node, - const std::string hint, const bool isMandatory) +std::unique_ptr XMLAttribute(const std::string attributeName, + const pugi::xml_node &node, + const std::string hint, const bool isMandatory) { std::unique_ptr attribute( new pugi::xml_attribute(node.attribute(attributeName.c_str()))); @@ -112,21 +107,17 @@ XMLAttribute(const std::string attributeName, const pugi::xml_node &node, { const std::string nodeName(node.name()); - helper::Throw( - "Helper", "adiosXMLUtil", "XMLAttribute", - "No attribute " + attributeName + " found on <" + nodeName + - "> element" + hint); + helper::Throw("Helper", "adiosXMLUtil", "XMLAttribute", + "No attribute " + attributeName + " found on <" + + nodeName + "> element" + hint); } return attribute; } -adios2::Params XMLGetParameters(const pugi::xml_node &node, - const std::string hint, - const std::string xmlKey, - const std::string xmlValue) +adios2::Params XMLGetParameters(const pugi::xml_node &node, const std::string hint, + const std::string xmlKey, const std::string xmlValue) { - const std::string errorMessage("in node " + std::string(node.value()) + - ", " + hint); + const std::string errorMessage("in node " + std::string(node.value()) + ", " + hint); Params parameters; for (const pugi::xml_node ¶mNode : node.children("parameter")) diff --git a/source/adios2/helper/adiosXMLUtil.h b/source/adios2/helper/adiosXMLUtil.h index e88980d09a..61f373c854 100644 --- a/source/adios2/helper/adiosXMLUtil.h +++ b/source/adios2/helper/adiosXMLUtil.h @@ -53,8 +53,7 @@ std::unique_ptr XMLDocument(const std::string &xmlContents, */ std::unique_ptr XMLNode(const std::string nodeName, const pugi::xml_document &xmlDocument, - const std::string hint, - const bool isMandatory = true, + const std::string hint, const bool isMandatory = true, const bool isUnique = false); /** @@ -68,10 +67,8 @@ std::unique_ptr XMLNode(const std::string nodeName, * unique (many nodes) * @return pugi::xml_node must be unique_ptr to keep pugixml linked privately */ -std::unique_ptr XMLNode(const std::string nodeName, - const pugi::xml_node &upperNode, - const std::string hint, - const bool isMandatory = true, +std::unique_ptr XMLNode(const std::string nodeName, const pugi::xml_node &upperNode, + const std::string hint, const bool isMandatory = true, const bool isUnique = false); /** @@ -84,9 +81,10 @@ std::unique_ptr XMLNode(const std::string nodeName, * @return pugi::xml_attribute must be unique_ptr to keep pugixml linked * privately */ -std::unique_ptr -XMLAttribute(const std::string attributeName, const pugi::xml_node &node, - const std::string hint, const bool isMandatory = true); +std::unique_ptr XMLAttribute(const std::string attributeName, + const pugi::xml_node &node, + const std::string hint, + const bool isMandatory = true); /** * Get Parameters map of key/value strings from a XML node @@ -96,8 +94,7 @@ XMLAttribute(const std::string attributeName, const pugi::xml_node &node, * @param value identifier in the XML schema for parameter value * @return parameters map */ -adios2::Params XMLGetParameters(const pugi::xml_node &node, - const std::string hint, +adios2::Params XMLGetParameters(const pugi::xml_node &node, const std::string hint, const std::string xmlKey = "key", const std::string xmlValue = "value"); diff --git a/source/adios2/helper/adiosYAML.cpp b/source/adios2/helper/adiosYAML.cpp index 8c8a7682f6..a12d8f9d0c 100644 --- a/source/adios2/helper/adiosYAML.cpp +++ b/source/adios2/helper/adiosYAML.cpp @@ -32,17 +32,15 @@ YAML::Node YAMLNode(const std::string nodeName, const YAML::Node &upperNode, { helper::Throw( "Helper", "adiosYAML", "YAMLNode", - "no " + nodeName + " node found, (is your node key lower case?), " + - hint); + "no " + nodeName + " node found, (is your node key lower case?), " + hint); } if (node && node.Type() != nodeType) { - helper::Throw( - "Helper", "adiosYAML", "YAMLNode", - "node " + nodeName + - " is the wrong type, review adios2 " - "config YAML specs for the node, " + - hint); + helper::Throw("Helper", "adiosYAML", "YAMLNode", + "node " + nodeName + + " is the wrong type, review adios2 " + "config YAML specs for the node, " + + hint); } return node; } @@ -59,8 +57,7 @@ Params YAMLNodeMapToParams(const YAML::Node &node, const std::string &hint) { helper::Throw( "Helper", "adiosYAML", "YAMLNodeMapToParams", - "found duplicated key : " + key + - ", keys must be unique in a YAML node, " + hint); + "found duplicated key : " + key + ", keys must be unique in a YAML node, " + hint); } } return parameters; @@ -71,56 +68,48 @@ Params YAMLNodeMapToParams(const YAML::Node &node, const std::string &hint) void ParseConfigYAML(core::ADIOS &adios, const std::string &configFileYAML, std::map &ios) { - const std::string hint = "when parsing config file " + configFileYAML + - " in call to ADIOS constructor"; + const std::string hint = + "when parsing config file " + configFileYAML + " in call to ADIOS constructor"; constexpr bool isMandatory = true; constexpr bool isNotMandatory = false; - auto lf_IOVariableYAML = [&](const YAML::Node &variableMap, - core::IO ¤tIO) { - const YAML::Node &variableNameScalar = YAMLNode( - "Variable", variableMap, hint, isMandatory, YAML::NodeType::Scalar); + auto lf_IOVariableYAML = [&](const YAML::Node &variableMap, core::IO ¤tIO) { + const YAML::Node &variableNameScalar = + YAMLNode("Variable", variableMap, hint, isMandatory, YAML::NodeType::Scalar); const std::string variableName = variableNameScalar.as(); const YAML::Node operationsSequence = - YAMLNode("Operations", variableMap, hint, isNotMandatory, - YAML::NodeType::Sequence); + YAMLNode("Operations", variableMap, hint, isNotMandatory, YAML::NodeType::Sequence); if (operationsSequence) { // loop through each transport node const std::string errorMessage = - " in operations node from variable " + variableName + ", " + - hint; + " in operations node from variable " + variableName + ", " + hint; - for (auto it = operationsSequence.begin(); - it != operationsSequence.end(); ++it) + for (auto it = operationsSequence.begin(); it != operationsSequence.end(); ++it) { const YAML::Node typeScalar = - YAMLNode("Type", *it, errorMessage, isMandatory, - YAML::NodeType::Scalar); + YAMLNode("Type", *it, errorMessage, isMandatory, YAML::NodeType::Scalar); Params parameters = YAMLNodeMapToParams(*it, hint); - const std::string operatorType = - EraseKey("Type", parameters); + const std::string operatorType = EraseKey("Type", parameters); - currentIO.m_VarOpsPlaceholder[variableName].push_back( - {operatorType, parameters}); + currentIO.m_VarOpsPlaceholder[variableName].push_back({operatorType, parameters}); } } }; auto lf_IOYAML = [&](const std::string &ioName, const YAML::Node &ioMap) { // Build the IO object - auto itCurrentIO = ios.emplace( - std::piecewise_construct, std::forward_as_tuple(ioName), - std::forward_as_tuple(adios, ioName, true, adios.m_HostLanguage)); + auto itCurrentIO = + ios.emplace(std::piecewise_construct, std::forward_as_tuple(ioName), + std::forward_as_tuple(adios, ioName, true, adios.m_HostLanguage)); core::IO ¤tIO = itCurrentIO.first->second; // Engine parameters - const YAML::Node engineMap = - YAMLNode("Engine", ioMap, hint, false, YAML::NodeType::Map); + const YAML::Node engineMap = YAMLNode("Engine", ioMap, hint, false, YAML::NodeType::Map); if (engineMap) { @@ -128,8 +117,7 @@ void ParseConfigYAML(core::ADIOS &adios, const std::string &configFileYAML, auto itType = parameters.find("Type"); if (itType != parameters.end()) { - const std::string type = - EraseKey("Type", parameters); + const std::string type = EraseKey("Type", parameters); currentIO.SetEngine(type); } currentIO.SetParameters(parameters); @@ -149,21 +137,19 @@ void ParseConfigYAML(core::ADIOS &adios, const std::string &configFileYAML, } // Transports - const YAML::Node transportsSequence = YAMLNode( - "Transports", ioMap, hint, false, YAML::NodeType::Sequence); + const YAML::Node transportsSequence = + YAMLNode("Transports", ioMap, hint, false, YAML::NodeType::Sequence); if (transportsSequence) { // loop through each transport node - for (auto it = transportsSequence.begin(); - it != transportsSequence.end(); ++it) + for (auto it = transportsSequence.begin(); it != transportsSequence.end(); ++it) { YAMLNode("Type", *it, " in transport node " + hint, isMandatory, YAML::NodeType::Scalar); Params parameters = YAMLNodeMapToParams(*it, hint); - const std::string type = - EraseKey("Type", parameters); + const std::string type = EraseKey("Type", parameters); currentIO.AddTransport(type, parameters); } @@ -171,8 +157,7 @@ void ParseConfigYAML(core::ADIOS &adios, const std::string &configFileYAML, }; // BODY OF FUNCTION STARTS HERE - const std::string fileContents = - adios.GetComm().BroadcastFile(configFileYAML, hint); + const std::string fileContents = adios.GetComm().BroadcastFile(configFileYAML, hint); const YAML::Node document = YAML::Load(fileContents); if (!document) @@ -187,8 +172,8 @@ void ParseConfigYAML(core::ADIOS &adios, const std::string &configFileYAML, for (auto itNode = document.begin(); itNode != document.end(); ++itNode) { - const YAML::Node ioScalar = YAMLNode( - "IO", *itNode, hint, isNotMandatory, YAML::NodeType::Scalar); + const YAML::Node ioScalar = + YAMLNode("IO", *itNode, hint, isNotMandatory, YAML::NodeType::Scalar); if (ioScalar) { const std::string ioName = ioScalar.as(); diff --git a/source/adios2/helper/kokkos/adiosKokkos.cpp b/source/adios2/helper/kokkos/adiosKokkos.cpp index bd7415f43a..e0599944e7 100644 --- a/source/adios2/helper/kokkos/adiosKokkos.cpp +++ b/source/adios2/helper/kokkos/adiosKokkos.cpp @@ -16,12 +16,10 @@ namespace void KokkosDeepCopy(const char *src, char *dst, size_t byteCount) { using mem_space = Kokkos::DefaultExecutionSpace::memory_space; - Kokkos::View> - srcView(src, byteCount); - Kokkos::View> - dstView(dst, byteCount); + Kokkos::View> srcView( + src, byteCount); + Kokkos::View> dstView( + dst, byteCount); Kokkos::deep_copy(dstView, srcView); } @@ -40,22 +38,20 @@ void KokkosMinMaxImpl(const T *data, const size_t size, T &min, T &max) } // types non supported on the device -void KokkosMinMaxImpl(const char * /*values*/, const size_t /*size*/, - char & /*min*/, char & /*max*/) +void KokkosMinMaxImpl(const char * /*values*/, const size_t /*size*/, char & /*min*/, + char & /*max*/) { } -void KokkosMinMaxImpl(const long double * /*values*/, const size_t /*size*/, - long double & /*min*/, long double & /*max*/) +void KokkosMinMaxImpl(const long double * /*values*/, const size_t /*size*/, long double & /*min*/, + long double & /*max*/) { } -void KokkosMinMaxImpl(const std::complex * /*values*/, - const size_t /*size*/, std::complex & /*min*/, - std::complex & /*max*/) +void KokkosMinMaxImpl(const std::complex * /*values*/, const size_t /*size*/, + std::complex & /*min*/, std::complex & /*max*/) { } -void KokkosMinMaxImpl(const std::complex * /*values*/, - const size_t /*size*/, std::complex & /*min*/, - std::complex & /*max*/) +void KokkosMinMaxImpl(const std::complex * /*values*/, const size_t /*size*/, + std::complex & /*min*/, std::complex & /*max*/) { } @@ -95,9 +91,8 @@ bool IsGPUbuffer(const void *ptr) } #endif #ifdef ADIOS2_HAVE_KOKKOS_SYCL - auto ret = - sycl::address_space_cast(ptr); + auto ret = sycl::address_space_cast(ptr); if (ret != nullptr) { return true; @@ -140,9 +135,8 @@ void GPUMinMax(const T *values, const size_t size, T &min, T &max) } } -#define declare_type(T) \ - template void adios2::helper::GPUMinMax( \ - const T *values, const size_t size, T &min, T &max); +#define declare_type(T) \ + template void adios2::helper::GPUMinMax(const T *values, const size_t size, T &min, T &max); ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type diff --git a/source/adios2/helper/kokkos/adiosKokkos.h b/source/adios2/helper/kokkos/adiosKokkos.h index a2c4f816b8..fa231603a5 100644 --- a/source/adios2/helper/kokkos/adiosKokkos.h +++ b/source/adios2/helper/kokkos/adiosKokkos.h @@ -22,16 +22,13 @@ namespace helper * CUDA kernel for computing the min and max from a GPU buffer */ template -ADIOS2_EXPORT void GPUMinMax(const T *values, const size_t size, T &min, - T &max); +ADIOS2_EXPORT void GPUMinMax(const T *values, const size_t size, T &min, T &max); /** * Wrapper around cudaMemcpy needed for isolating CUDA interface dependency */ -ADIOS2_EXPORT void MemcpyGPUToBuffer(char *dst, const char *GPUbuffer, - size_t byteCount); -ADIOS2_EXPORT void MemcpyBufferToGPU(char *GPUbuffer, const char *src, - size_t byteCount); +ADIOS2_EXPORT void MemcpyGPUToBuffer(char *dst, const char *GPUbuffer, size_t byteCount); +ADIOS2_EXPORT void MemcpyBufferToGPU(char *GPUbuffer, const char *src, size_t byteCount); ADIOS2_EXPORT void KokkosFinalize(); ADIOS2_EXPORT void KokkosInit(); diff --git a/source/adios2/operator/OperatorFactory.cpp b/source/adios2/operator/OperatorFactory.cpp index f6a6ab7037..3e9b0b419c 100644 --- a/source/adios2/operator/OperatorFactory.cpp +++ b/source/adios2/operator/OperatorFactory.cpp @@ -81,8 +81,7 @@ std::string OperatorTypeToString(const Operator::OperatorType type) } } -std::shared_ptr MakeOperator(const std::string &type, - const Params ¶meters) +std::shared_ptr MakeOperator(const std::string &type, const Params ¶meters) { std::shared_ptr ret = nullptr; @@ -152,24 +151,23 @@ std::shared_ptr MakeOperator(const std::string &type, } else { - helper::Throw( - "Operator", "OperatorFactory", "MakeOperator", - "ADIOS2 does not support " + typeLowerCase + " operation"); + helper::Throw("Operator", "OperatorFactory", "MakeOperator", + "ADIOS2 does not support " + typeLowerCase + + " operation"); } if (ret == nullptr) { - helper::Throw( - "Operator", "OperatorFactory", "MakeOperator", - "ADIOS2 didn't compile with " + typeLowerCase + - " library, operator not added"); + helper::Throw("Operator", "OperatorFactory", "MakeOperator", + "ADIOS2 didn't compile with " + typeLowerCase + + " library, operator not added"); } return ret; } -size_t Decompress(const char *bufferIn, const size_t sizeIn, char *dataOut, - MemorySpace memSpace, std::shared_ptr op) +size_t Decompress(const char *bufferIn, const size_t sizeIn, char *dataOut, MemorySpace memSpace, + std::shared_ptr op) { Operator::OperatorType compressorType; std::memcpy(&compressorType, bufferIn, 1); diff --git a/source/adios2/operator/OperatorFactory.h b/source/adios2/operator/OperatorFactory.h index ba93b35178..50519f93a4 100644 --- a/source/adios2/operator/OperatorFactory.h +++ b/source/adios2/operator/OperatorFactory.h @@ -17,11 +17,10 @@ namespace adios2 namespace core { -std::shared_ptr MakeOperator(const std::string &type, - const Params ¶meters); +std::shared_ptr MakeOperator(const std::string &type, const Params ¶meters); -size_t Decompress(const char *bufferIn, const size_t sizeIn, char *dataOut, - MemorySpace memSpace, std::shared_ptr op = nullptr); +size_t Decompress(const char *bufferIn, const size_t sizeIn, char *dataOut, MemorySpace memSpace, + std::shared_ptr op = nullptr); } // end namespace core } // end namespace adios2 diff --git a/source/adios2/operator/callback/Signature1.cpp b/source/adios2/operator/callback/Signature1.cpp index 34a037e938..ba42ad62f7 100644 --- a/source/adios2/operator/callback/Signature1.cpp +++ b/source/adios2/operator/callback/Signature1.cpp @@ -18,51 +18,45 @@ namespace core namespace callback { -#define declare_type(T, L) \ - Signature1::Signature1( \ - const std::function &function, \ - const Params ¶meters) \ - : Operator("Signature1", Operator::CALLBACK_SIGNATURE1, "callback", \ - parameters), \ - m_Function##L(function) \ - { \ +#define declare_type(T, L) \ + Signature1::Signature1( \ + const std::function &function, \ + const Params ¶meters) \ + : Operator("Signature1", Operator::CALLBACK_SIGNATURE1, "callback", parameters), \ + m_Function##L(function) \ + { \ } ADIOS2_FOREACH_STDTYPE_2ARGS(declare_type) #undef declare_type -#define declare_type(T, L) \ - void Signature1::RunCallback1( \ - const T *arg1, const std::string &arg2, const std::string &arg3, \ - const std::string &arg4, const size_t arg5, const Dims &arg6, \ - const Dims &arg7, const Dims &arg8) const \ - { \ - if (m_Function##L) \ - { \ - m_Function##L(arg1, arg2, arg3, arg4, arg5, arg6, arg7, arg8); \ - } \ - else \ - { \ - helper::Throw( \ - "Operator", "Signature1", "RunCallback1", \ - "Signature1 with type " + std::string(#L) + \ - " callback function failed"); \ - } \ +#define declare_type(T, L) \ + void Signature1::RunCallback1(const T *arg1, const std::string &arg2, const std::string &arg3, \ + const std::string &arg4, const size_t arg5, const Dims &arg6, \ + const Dims &arg7, const Dims &arg8) const \ + { \ + if (m_Function##L) \ + { \ + m_Function##L(arg1, arg2, arg3, arg4, arg5, arg6, arg7, arg8); \ + } \ + else \ + { \ + helper::Throw("Operator", "Signature1", "RunCallback1", \ + "Signature1 with type " + std::string(#L) + \ + " callback function failed"); \ + } \ } ADIOS2_FOREACH_STDTYPE_2ARGS(declare_type) #undef declare_type -size_t Signature1::Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) +size_t Signature1::Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) { return 0; } -size_t Signature1::InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t Signature1::InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) { return 0; } diff --git a/source/adios2/operator/callback/Signature1.h b/source/adios2/operator/callback/Signature1.h index 8728bf37d2..2f8f4de37a 100644 --- a/source/adios2/operator/callback/Signature1.h +++ b/source/adios2/operator/callback/Signature1.h @@ -24,11 +24,10 @@ class Signature1 : public Operator { public: -#define declare_type(T) \ - Signature1(const std::function &function, \ +#define declare_type(T) \ + Signature1(const std::function &function, \ const Params ¶meters); ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) @@ -36,10 +35,9 @@ class Signature1 : public Operator ~Signature1() = default; -#define declare_type(T) \ - void RunCallback1(const T *, const std::string &, const std::string &, \ - const std::string &, const size_t, const Dims &, \ - const Dims &, const Dims &) const final; +#define declare_type(T) \ + void RunCallback1(const T *, const std::string &, const std::string &, const std::string &, \ + const size_t, const Dims &, const Dims &, const Dims &) const final; ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -52,9 +50,8 @@ class Signature1 : public Operator * UncompressedData), [ BloscCompressedChunk, ...]' * @return size of compressed buffer in bytes */ - size_t Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) final; + size_t Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) final; /** * @param bufferIn @@ -62,16 +59,14 @@ class Signature1 : public Operator * @param dataOut * @return size of decompressed buffer */ - size_t InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) final; + size_t InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) final; bool IsDataTypeValid(const DataType type) const final; private: -#define declare_type(T, L) \ - std::function \ +#define declare_type(T, L) \ + std::function \ m_Function##L; ADIOS2_FOREACH_STDTYPE_2ARGS(declare_type) #undef declare_type diff --git a/source/adios2/operator/callback/Signature2.cpp b/source/adios2/operator/callback/Signature2.cpp index 69203d884f..eae4c6614b 100644 --- a/source/adios2/operator/callback/Signature2.cpp +++ b/source/adios2/operator/callback/Signature2.cpp @@ -19,18 +19,16 @@ namespace callback { Signature2::Signature2( - const std::function &function, + const std::function &function, const Params ¶meters) : Operator("Signature2", Operator::CALLBACK_SIGNATURE2, "callback", parameters), m_Function(function) { } -void Signature2::RunCallback2(void *arg1, const std::string &arg2, - const std::string &arg3, const std::string &arg4, - const size_t arg5, const Dims &arg6, +void Signature2::RunCallback2(void *arg1, const std::string &arg2, const std::string &arg3, + const std::string &arg4, const size_t arg5, const Dims &arg6, const Dims &arg7, const Dims &arg8) const { if (m_Function) @@ -39,21 +37,18 @@ void Signature2::RunCallback2(void *arg1, const std::string &arg2, } else { - helper::Throw( - "Operator", "Signature2", "RunCallback2", - "callback function of Signature2 type failed"); + helper::Throw("Operator", "Signature2", "RunCallback2", + "callback function of Signature2 type failed"); } } -size_t Signature2::Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) +size_t Signature2::Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) { return 0; } -size_t Signature2::InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t Signature2::InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) { return 0; } diff --git a/source/adios2/operator/callback/Signature2.h b/source/adios2/operator/callback/Signature2.h index 87fe65fc55..e968da45c2 100644 --- a/source/adios2/operator/callback/Signature2.h +++ b/source/adios2/operator/callback/Signature2.h @@ -24,17 +24,15 @@ class Signature2 : public Operator { public: - Signature2(const std::function< - void(void *, const std::string &, const std::string &, - const std::string &, const size_t, const Dims &, - const Dims &, const Dims &)> &function, + Signature2(const std::function &function, const Params ¶meters); ~Signature2() = default; - void RunCallback2(void *, const std::string &, const std::string &, - const std::string &, const size_t, const Dims &, - const Dims &, const Dims &) const final; + void RunCallback2(void *, const std::string &, const std::string &, const std::string &, + const size_t, const Dims &, const Dims &, const Dims &) const final; /** * @param dataIn @@ -45,9 +43,8 @@ class Signature2 : public Operator * UncompressedData), [ BloscCompressedChunk, ...]' * @return size of compressed buffer in bytes */ - size_t Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) final; + size_t Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) final; /** * @param bufferIn @@ -55,15 +52,13 @@ class Signature2 : public Operator * @param dataOut * @return size of decompressed buffer */ - size_t InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) final; + size_t InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) final; bool IsDataTypeValid(const DataType type) const final; private: - std::function + std::function m_Function; }; diff --git a/source/adios2/operator/compress/CompressBZIP2.cpp b/source/adios2/operator/compress/CompressBZIP2.cpp index 700e4503e8..1e2edfff1e 100644 --- a/source/adios2/operator/compress/CompressBZIP2.cpp +++ b/source/adios2/operator/compress/CompressBZIP2.cpp @@ -32,9 +32,8 @@ CompressBZIP2::CompressBZIP2(const Params ¶meters) { } -size_t CompressBZIP2::Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, DataType type, - char *bufferOut) +size_t CompressBZIP2::Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + DataType type, char *bufferOut) { const uint8_t bufferVersion = 1; @@ -42,8 +41,7 @@ size_t CompressBZIP2::Operate(const char *dataIn, const Dims &blockStart, MakeCommonHeader(bufferOut, destOffset, bufferVersion); - const size_t sizeIn = - helper::GetTotalSize(blockCount, helper::GetDataTypeSize(type)); + const size_t sizeIn = helper::GetTotalSize(blockCount, helper::GetDataTypeSize(type)); const size_t batches = sizeIn / DefaultMaxFileBatchSize + 1; // bzip2 V1 metadata @@ -56,23 +54,18 @@ size_t CompressBZIP2::Operate(const char *dataIn, const Dims &blockStart, int workFactor = 0; if (!m_Parameters.empty()) { - const std::string hint(" in call to CompressBZIP2 Compress " + - ToString(type) + "\n"); - helper::SetParameterValueInt("blockSize100k", m_Parameters, - blockSize100k, hint); - helper::SetParameterValueInt("verbosity", m_Parameters, verbosity, - hint); - helper::SetParameterValueInt("workFactor", m_Parameters, workFactor, - hint); + const std::string hint(" in call to CompressBZIP2 Compress " + ToString(type) + "\n"); + helper::SetParameterValueInt("blockSize100k", m_Parameters, blockSize100k, hint); + helper::SetParameterValueInt("verbosity", m_Parameters, verbosity, hint); + helper::SetParameterValueInt("workFactor", m_Parameters, workFactor, hint); if (blockSize100k < 1 || blockSize100k > 9) { - helper::Throw( - "Operator", "CompressBZIP2", "Operate", - "BlockSize100K must be an " - "integer between 1 (less " - "compression, less memory) and 9 " - "(more compression, more memory) inclusive, " + - hint); + helper::Throw("Operator", "CompressBZIP2", "Operate", + "BlockSize100K must be an " + "integer between 1 (less " + "compression, less memory) and 9 " + "(more compression, more memory) inclusive, " + + hint); } } @@ -84,20 +77,17 @@ size_t CompressBZIP2::Operate(const char *dataIn, const Dims &blockStart, { char *source = const_cast(dataIn) + sourceOffset; - const size_t batchSize = (b == batches - 1) - ? sizeIn % DefaultMaxFileBatchSize - : DefaultMaxFileBatchSize; + const size_t batchSize = + (b == batches - 1) ? sizeIn % DefaultMaxFileBatchSize : DefaultMaxFileBatchSize; unsigned int sourceLen = static_cast(batchSize); char *dest = bufferOut + destOffset; unsigned int destLen = sourceLen; - int status = - BZ2_bzBuffToBuffCompress(dest, &destLen, source, sourceLen, - blockSize100k, verbosity, workFactor); + int status = BZ2_bzBuffToBuffCompress(dest, &destLen, source, sourceLen, blockSize100k, + verbosity, workFactor); - CheckStatus(status, "in call to ADIOS2 BZIP2 Compress batch " + - std::to_string(b) + "\n"); + CheckStatus(status, "in call to ADIOS2 BZIP2 Compress batch " + std::to_string(b) + "\n"); // bzip2 V1 metadata PutParameter(bufferOut, batchInfoOffset, sourceOffset); @@ -113,12 +103,10 @@ size_t CompressBZIP2::Operate(const char *dataIn, const Dims &blockStart, return destOffset; } -size_t CompressBZIP2::InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressBZIP2::InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) { size_t bufferInOffset = 1; // skip operator type - const uint8_t bufferVersion = - GetParameter(bufferIn, bufferInOffset); + const uint8_t bufferVersion = GetParameter(bufferIn, bufferInOffset); bufferInOffset += 2; // skip two reserved bytes if (bufferVersion == 1) @@ -134,8 +122,7 @@ size_t CompressBZIP2::InverseOperate(const char *bufferIn, const size_t sizeIn, } else { - helper::Throw("Operator", "CompressBZIP2", - "InverseOperate", + helper::Throw("Operator", "CompressBZIP2", "InverseOperate", "invalid bzip2 buffer version"); } @@ -144,8 +131,7 @@ size_t CompressBZIP2::InverseOperate(const char *bufferIn, const size_t sizeIn, bool CompressBZIP2::IsDataTypeValid(const DataType type) const { return true; } -size_t CompressBZIP2::DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressBZIP2::DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut) { // Do NOT remove even if the buffer version is updated. Data might be still // in lagacy formats. This function must be kept for backward compatibility. @@ -164,40 +150,34 @@ size_t CompressBZIP2::DecompressV1(const char *bufferIn, const size_t sizeIn, for (size_t b = 0; b < batches; ++b) { - unsigned int destOffset = - GetParameter(bufferIn, bufferInOffset); + unsigned int destOffset = GetParameter(bufferIn, bufferInOffset); bufferInOffset += sizeof(unsigned int); char *dest = dataOut + destOffset; - const size_t batchSize = (b == batches - 1) - ? sizeOut % DefaultMaxFileBatchSize - : DefaultMaxFileBatchSize; + const size_t batchSize = + (b == batches - 1) ? sizeOut % DefaultMaxFileBatchSize : DefaultMaxFileBatchSize; unsigned int destLen = static_cast(batchSize); - unsigned int sourceOffset = - GetParameter(bufferIn, bufferInOffset); + unsigned int sourceOffset = GetParameter(bufferIn, bufferInOffset); char *source = const_cast(bufferIn) + sourceOffset; - unsigned int sourceLen = - GetParameter(bufferIn, bufferInOffset); + unsigned int sourceLen = GetParameter(bufferIn, bufferInOffset); - int status = BZ2_bzBuffToBuffDecompress(dest, &destLen, source, - sourceLen, small, verbosity); + int status = + BZ2_bzBuffToBuffDecompress(dest, &destLen, source, sourceLen, small, verbosity); - CheckStatus(status, "in call to ADIOS2 BZIP2 Decompress batch " + - std::to_string(b) + "\n"); + CheckStatus(status, "in call to ADIOS2 BZIP2 Decompress batch " + std::to_string(b) + "\n"); expectedSizeOut += static_cast(destLen); } if (expectedSizeOut != sizeOut) { - helper::Throw("Operator", "CompressBZIP2", - "DecompressV1", + helper::Throw("Operator", "CompressBZIP2", "DecompressV1", "corrupted bzip2 buffer"); } @@ -209,50 +189,45 @@ void CompressBZIP2::CheckStatus(const int status, const std::string hint) const switch (status) { case (BZ_CONFIG_ERROR): - helper::Throw( - "Operator", "CompressBZIP2", "CheckStatus", - "BZ_CONFIG_ERROR, BZIP2 library is not configured " - "correctly" + - hint); + helper::Throw("Operator", "CompressBZIP2", "CheckStatus", + "BZ_CONFIG_ERROR, BZIP2 library is not configured " + "correctly" + + hint); case (BZ_PARAM_ERROR): - helper::Throw( - "Operator", "CompressBZIP2", "CheckStatus", - "BZ_PARAM_ERROR bufferOut stream might be null" + hint); + helper::Throw("Operator", "CompressBZIP2", "CheckStatus", + "BZ_PARAM_ERROR bufferOut stream might be null" + + hint); case (BZ_MEM_ERROR): - helper::Throw( - "Operator", "CompressBZIP2", "CheckStatus", - "BZ_MEM_ERROR BZIP2 detected insufficient memory " + hint); + helper::Throw("Operator", "CompressBZIP2", "CheckStatus", + "BZ_MEM_ERROR BZIP2 detected insufficient memory " + + hint); case (BZ_OUTBUFF_FULL): - helper::Throw( - "Operator", "CompressBZIP2", "CheckStatus", - "BZ_OUTBUFF_FULL BZIP2 detected " - "size of compressed data is larger than " - "destination length " + - hint); + helper::Throw("Operator", "CompressBZIP2", "CheckStatus", + "BZ_OUTBUFF_FULL BZIP2 detected " + "size of compressed data is larger than " + "destination length " + + hint); // decompression case (BZ_DATA_ERROR): - helper::Throw( - "Operator", "CompressBZIP2", "CheckStatus", - "BZ_DATA_ERROR, BZIP2 library " - "detected integrity errors in compressed " - "data " + - hint); + helper::Throw("Operator", "CompressBZIP2", "CheckStatus", + "BZ_DATA_ERROR, BZIP2 library " + "detected integrity errors in compressed " + "data " + + hint); case (BZ_DATA_ERROR_MAGIC): - helper::Throw( - "Operator", "CompressBZIP2", "CheckStatus", - "BZ_DATA_ERROR_MAGIC, BZIP2 library " - "detected wrong magic numbers in " - "compressed data " + - hint); + helper::Throw("Operator", "CompressBZIP2", "CheckStatus", + "BZ_DATA_ERROR_MAGIC, BZIP2 library " + "detected wrong magic numbers in " + "compressed data " + + hint); case (BZ_UNEXPECTED_EOF): - helper::Throw("Operator", "CompressBZIP2", - "CheckStatus", + helper::Throw("Operator", "CompressBZIP2", "CheckStatus", "BZ_UNEXPECTED_EOF, BZIP2 library " "detected unexpected end of " "compressed data " + diff --git a/source/adios2/operator/compress/CompressBZIP2.h b/source/adios2/operator/compress/CompressBZIP2.h index 28bb744868..64b961904e 100644 --- a/source/adios2/operator/compress/CompressBZIP2.h +++ b/source/adios2/operator/compress/CompressBZIP2.h @@ -39,9 +39,8 @@ class CompressBZIP2 : public Operator * @param bufferOut * @return size of compressed buffer */ - size_t Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) final; + size_t Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) final; /** * @param bufferIn @@ -49,8 +48,7 @@ class CompressBZIP2 : public Operator * @param dataOut * @return size of decompressed buffer */ - size_t InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) final; + size_t InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) final; bool IsDataTypeValid(const DataType type) const final; @@ -71,8 +69,7 @@ class CompressBZIP2 : public Operator * @param dataOut : decompressed data buffer * @return : number of bytes in dataOut */ - size_t DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut); + size_t DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut); }; } // end namespace compress diff --git a/source/adios2/operator/compress/CompressBlosc.cpp b/source/adios2/operator/compress/CompressBlosc.cpp index 9f20c51783..c4bb6d53ae 100644 --- a/source/adios2/operator/compress/CompressBlosc.cpp +++ b/source/adios2/operator/compress/CompressBlosc.cpp @@ -34,34 +34,29 @@ const std::map CompressBlosc::m_Shuffles = { {"BLOSC_SHUFFLE", BLOSC_SHUFFLE}, {"BLOSC_BITSHUFFLE", BLOSC_BITSHUFFLE}}; -const std::set CompressBlosc::m_Compressors = { - "blosclz", "lz4", "lz4hc", "snappy", "zlib", "zstd"}; +const std::set CompressBlosc::m_Compressors = {"blosclz", "lz4", "lz4hc", + "snappy", "zlib", "zstd"}; CompressBlosc::CompressBlosc(const Params ¶meters) : Operator("blosc", COMPRESS_BLOSC, "compress", parameters) { } -size_t CompressBlosc::Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) +size_t CompressBlosc::Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) { size_t bufferOutOffset = 0; const uint8_t bufferVersion = 1; MakeCommonHeader(bufferOut, bufferOutOffset, bufferVersion); - const size_t sizeIn = - helper::GetTotalSize(blockCount, helper::GetDataTypeSize(type)); + const size_t sizeIn = helper::GetTotalSize(blockCount, helper::GetDataTypeSize(type)); // blosc2 V1 metadata PutParameter(bufferOut, bufferOutOffset, sizeIn); - PutParameter(bufferOut, bufferOutOffset, - static_cast(BLOSC2_VERSION_MAJOR)); - PutParameter(bufferOut, bufferOutOffset, - static_cast(BLOSC2_VERSION_MINOR)); - PutParameter(bufferOut, bufferOutOffset, - static_cast(BLOSC2_VERSION_RELEASE)); + PutParameter(bufferOut, bufferOutOffset, static_cast(BLOSC2_VERSION_MAJOR)); + PutParameter(bufferOut, bufferOutOffset, static_cast(BLOSC2_VERSION_MINOR)); + PutParameter(bufferOut, bufferOutOffset, static_cast(BLOSC2_VERSION_RELEASE)); // blosc2 V1 metadata end bool useMemcpy = false; @@ -84,8 +79,8 @@ size_t CompressBlosc::Operate(const char *dataIn, const Dims &blockStart, if (key == "compression_level" || key == "clevel") { - compressionLevel = static_cast(helper::StringTo( - value, "when setting Blosc clevel parameter\n")); + compressionLevel = static_cast( + helper::StringTo(value, "when setting Blosc clevel parameter\n")); if (compressionLevel < 0 || compressionLevel > 9) { helper::Throw( @@ -100,17 +95,16 @@ size_t CompressBlosc::Operate(const char *dataIn, const Dims &blockStart, auto itShuffle = m_Shuffles.find(value); if (itShuffle == m_Shuffles.end()) { - helper::Throw( - "Operator", "CompressBlosc", "Operate", - "Parameter doshuffle must be BLOSC_SHUFFLE, " - "BLOSC_NOSHUFFLE or BLOSC_BITSHUFFLE"); + helper::Throw("Operator", "CompressBlosc", "Operate", + "Parameter doshuffle must be BLOSC_SHUFFLE, " + "BLOSC_NOSHUFFLE or BLOSC_BITSHUFFLE"); } doShuffle = itShuffle->second; } else if (key == "nthreads") { - threads = static_cast(helper::StringTo( - value, "when setting Blosc nthreads parameter\n")); + threads = static_cast( + helper::StringTo(value, "when setting Blosc nthreads parameter\n")); } else if (key == "compressor") { @@ -125,28 +119,27 @@ size_t CompressBlosc::Operate(const char *dataIn, const Dims &blockStart, } else if (key == "blocksize") { - blockSize = static_cast(helper::StringTo( - value, "when setting Blosc blocksize parameter\n")); + blockSize = static_cast( + helper::StringTo(value, "when setting Blosc blocksize parameter\n")); } else if (key == "threshold") { - thresholdSize = static_cast(helper::StringTo( - value, "when setting Blosc threshold parameter\n")); + thresholdSize = static_cast( + helper::StringTo(value, "when setting Blosc threshold parameter\n")); if (thresholdSize < 128u) thresholdSize = 128u; } else { helper::Log("Operator", "CompressBlosc", "Operate", - "Unknown parameter keyword '" + key + "' with value '" + - value + "' passed to Blosc compression operator.", + "Unknown parameter keyword '" + key + "' with value '" + value + + "' passed to Blosc compression operator.", helper::WARNING); } } // write header to detect new compression format (set first 8 byte to zero) - DataHeader *headerPtr = - reinterpret_cast(bufferOut + bufferOutOffset); + DataHeader *headerPtr = reinterpret_cast(bufferOut + bufferOutOffset); // set default header *headerPtr = DataHeader{}; @@ -171,8 +164,7 @@ size_t CompressBlosc::Operate(const char *dataIn, const Dims &blockStart, { helper::Throw( "Operator", "CompressBlosc", "Operate", - "blosc library linked does not support compressor " + - compressor); + "blosc library linked does not support compressor " + compressor); } blosc2_set_nthreads(threads); blosc1_set_blocksize(blockSize); @@ -181,16 +173,14 @@ size_t CompressBlosc::Operate(const char *dataIn, const Dims &blockStart, for (; inputOffset < sizeIn; ++chunk) { size_t inputChunkSize = - std::min(sizeIn - inputOffset, - static_cast(BLOSC2_MAX_BUFFERSIZE)); - bloscSize_t maxIntputSize = - static_cast(inputChunkSize); + std::min(sizeIn - inputOffset, static_cast(BLOSC2_MAX_BUFFERSIZE)); + bloscSize_t maxIntputSize = static_cast(inputChunkSize); bloscSize_t maxChunkSize = maxIntputSize + BLOSC2_MAX_OVERHEAD; - bloscSize_t compressedChunkSize = blosc2_compress( - compressionLevel, doShuffle, typesize, dataIn + inputOffset, - maxIntputSize, bufferOut + bufferOutOffset, maxChunkSize); + bloscSize_t compressedChunkSize = + blosc2_compress(compressionLevel, doShuffle, typesize, dataIn + inputOffset, + maxIntputSize, bufferOut + bufferOutOffset, maxChunkSize); if (compressedChunkSize > 0) bufferOutOffset += static_cast(compressedChunkSize); @@ -225,19 +215,16 @@ size_t CompressBlosc::Operate(const char *dataIn, const Dims &blockStart, size_t CompressBlosc::GetHeaderSize() const { return headerSize; } -size_t CompressBlosc::InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressBlosc::InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) { size_t bufferInOffset = 1; // skip operator type - const uint8_t bufferVersion = - GetParameter(bufferIn, bufferInOffset); + const uint8_t bufferVersion = GetParameter(bufferIn, bufferInOffset); bufferInOffset += 2; // skip two reserved bytes headerSize = bufferInOffset; if (bufferVersion == 1) { - return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, - dataOut); + return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, dataOut); } else if (bufferVersion == 2) { @@ -246,8 +233,7 @@ size_t CompressBlosc::InverseOperate(const char *bufferIn, const size_t sizeIn, } else { - helper::Throw("Operator", "CompressBlosc", - "InverseOperate", + helper::Throw("Operator", "CompressBlosc", "InverseOperate", "invalid blosc buffer version"); } @@ -256,8 +242,7 @@ size_t CompressBlosc::InverseOperate(const char *bufferIn, const size_t sizeIn, bool CompressBlosc::IsDataTypeValid(const DataType type) const { return true; } -size_t CompressBlosc::DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressBlosc::DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut) { // Do NOT remove even if the buffer version is updated. Data might be still // in lagacy formats. This function must be kept for backward compatibility. @@ -268,35 +253,30 @@ size_t CompressBlosc::DecompressV1(const char *bufferIn, const size_t sizeIn, size_t sizeOut = GetParameter(bufferIn, bufferInOffset); bool isCompressed = true; - m_VersionInfo = - " Data is compressed using BLOSC Version " + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + - ". Please make sure a compatible version is used for decompression."; + m_VersionInfo = " Data is compressed using BLOSC Version " + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + + ". Please make sure a compatible version is used for decompression."; if (sizeIn - bufferInOffset < sizeof(DataHeader)) { - helper::Throw( - "Operator", "CompressBlosc", "InverseOperate", - "corrupted compressed buffer." + m_VersionInfo); + helper::Throw("Operator", "CompressBlosc", "InverseOperate", + "corrupted compressed buffer." + m_VersionInfo); } const bool isChunked = - reinterpret_cast(bufferIn + bufferInOffset) - ->IsChunked(); + reinterpret_cast(bufferIn + bufferInOffset)->IsChunked(); size_t decompressedSize = 0; if (isChunked) { - decompressedSize = - DecompressChunkedFormat(bufferIn + bufferInOffset, - sizeIn - bufferInOffset, dataOut, sizeOut); + decompressedSize = DecompressChunkedFormat(bufferIn + bufferInOffset, + sizeIn - bufferInOffset, dataOut, sizeOut); } else { - decompressedSize = - DecompressOldFormat(bufferIn + bufferInOffset, - sizeIn - bufferInOffset, dataOut, sizeOut); + decompressedSize = DecompressOldFormat(bufferIn + bufferInOffset, sizeIn - bufferInOffset, + dataOut, sizeOut); } if (decompressedSize == 0) // the decompression was not applied { @@ -305,8 +285,8 @@ size_t CompressBlosc::DecompressV1(const char *bufferIn, const size_t sizeIn, } if (decompressedSize != sizeOut) { - helper::Throw("Operator", "CompressBlosc", - "DecompressV1", m_VersionInfo); + helper::Throw("Operator", "CompressBlosc", "DecompressV1", + m_VersionInfo); } headerSize += sizeIn - sizeOut; if (!isCompressed) @@ -314,10 +294,8 @@ size_t CompressBlosc::DecompressV1(const char *bufferIn, const size_t sizeIn, return sizeOut; } -size_t CompressBlosc::DecompressChunkedFormat(const char *bufferIn, - const size_t sizeIn, - char *dataOut, - const size_t sizeOut) +size_t CompressBlosc::DecompressChunkedFormat(const char *bufferIn, const size_t sizeIn, + char *dataOut, const size_t sizeOut) { const DataHeader *dataPtr = reinterpret_cast(bufferIn); uint32_t num_chunks = dataPtr->GetNumChunks(); @@ -345,8 +323,8 @@ size_t CompressBlosc::DecompressChunkedFormat(const char *bufferIn, const std::string value = itParameter.second; if (key == "nthreads") { - threads = static_cast(helper::StringTo( - value, "when setting Blosc nthreads parameter\n")); + threads = static_cast( + helper::StringTo(value, "when setting Blosc nthreads parameter\n")); } } blosc2_set_nthreads(threads); @@ -374,14 +352,12 @@ size_t CompressBlosc::DecompressChunkedFormat(const char *bufferIn, char *out_ptr = dataOut + currentOutputSize; - size_t outputChunkSize = - std::min(uncompressedSize - currentOutputSize, - static_cast(BLOSC2_MAX_BUFFERSIZE)); - bloscSize_t max_output_size = - static_cast(outputChunkSize); + size_t outputChunkSize = std::min(uncompressedSize - currentOutputSize, + static_cast(BLOSC2_MAX_BUFFERSIZE)); + bloscSize_t max_output_size = static_cast(outputChunkSize); - bloscSize_t decompressdSize = blosc2_decompress( - in_ptr, max_inputDataSize, out_ptr, max_output_size); + bloscSize_t decompressdSize = + blosc2_decompress(in_ptr, max_inputDataSize, out_ptr, max_output_size); if (decompressdSize > 0) currentOutputSize += static_cast(decompressdSize); @@ -389,8 +365,7 @@ size_t CompressBlosc::DecompressChunkedFormat(const char *bufferIn, { helper::Throw( "Operator", "CompressBlosc", "DecompressChunkedFormat", - "blosc decompress failed with zero buffer size. " + - m_VersionInfo); + "blosc decompress failed with zero buffer size. " + m_VersionInfo); } inputOffset += static_cast(max_inputDataSize); } @@ -408,8 +383,7 @@ size_t CompressBlosc::DecompressChunkedFormat(const char *bufferIn, return currentOutputSize; } -size_t CompressBlosc::DecompressOldFormat(const char *bufferIn, - const size_t sizeIn, char *dataOut, +size_t CompressBlosc::DecompressOldFormat(const char *bufferIn, const size_t sizeIn, char *dataOut, const size_t sizeOut) const { blosc2_init(); @@ -420,13 +394,12 @@ size_t CompressBlosc::DecompressOldFormat(const char *bufferIn, const std::string value = itParameter.second; if (key == "nthreads") { - threads = static_cast(helper::StringTo( - value, "when setting Blosc nthreads parameter\n")); + threads = static_cast( + helper::StringTo(value, "when setting Blosc nthreads parameter\n")); } } blosc2_set_nthreads(threads); - const int decompressedSize = - blosc2_decompress(bufferIn, sizeIn, dataOut, sizeOut); + const int decompressedSize = blosc2_decompress(bufferIn, sizeIn, dataOut, sizeOut); blosc2_destroy(); return static_cast(decompressedSize); } diff --git a/source/adios2/operator/compress/CompressBlosc.h b/source/adios2/operator/compress/CompressBlosc.h index 3e1d8d273b..0990ac4a97 100644 --- a/source/adios2/operator/compress/CompressBlosc.h +++ b/source/adios2/operator/compress/CompressBlosc.h @@ -52,9 +52,8 @@ class CompressBlosc : public Operator * UncompressedData), [ BloscCompressedChunk, ...]' * @return size of compressed buffer in bytes */ - size_t Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) final; + size_t Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) final; /** * @param bufferIn @@ -62,8 +61,7 @@ class CompressBlosc : public Operator * @param dataOut * @return size of decompressed buffer */ - size_t InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) final; + size_t InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) final; bool IsDataTypeValid(const DataType type) const final; @@ -75,13 +73,13 @@ class CompressBlosc : public Operator size_t bufferDecompressedSize = 0; /** Decompress chunked data */ - size_t DecompressChunkedFormat(const char *bufferIn, const size_t sizeIn, - char *dataOut, const size_t sizeOut); + size_t DecompressChunkedFormat(const char *bufferIn, const size_t sizeIn, char *dataOut, + const size_t sizeOut); /** Decompress data written before ADIOS2 supported large variables larger * 2GiB. */ - size_t DecompressOldFormat(const char *bufferIn, const size_t sizeIn, - char *dataOut, const size_t sizeOut) const; + size_t DecompressOldFormat(const char *bufferIn, const size_t sizeIn, char *dataOut, + const size_t sizeOut) const; /** * Decompress function for V1 buffer. Do NOT remove even if the buffer @@ -92,8 +90,7 @@ class CompressBlosc : public Operator * @param dataOut : decompressed data buffer * @return : number of bytes in dataOut */ - size_t DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut); + size_t DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut); ADIOS2_CLASS_PACKED(DataHeader) { @@ -117,10 +114,7 @@ class CompressBlosc : public Operator uint32_t numberOfChunks = 0u; public: - void SetNumChunks(const uint32_t numChunks) - { - numberOfChunks = numChunks; - } + void SetNumChunks(const uint32_t numChunks) { numberOfChunks = numChunks; } uint32_t GetNumChunks() const { return numberOfChunks; } bool IsChunked() const { return format == 0; } diff --git a/source/adios2/operator/compress/CompressLibPressio.cpp b/source/adios2/operator/compress/CompressLibPressio.cpp index de5596f0c1..4b1edad091 100644 --- a/source/adios2/operator/compress/CompressLibPressio.cpp +++ b/source/adios2/operator/compress/CompressLibPressio.cpp @@ -69,8 +69,7 @@ static pressio_dtype adios_to_libpressio_dtype(DataType var_type) { return pressio_uint64_dtype; } - helper::Throw("Operator", "CompressLibPressio", - "adios_to_libpressio_dtype", + helper::Throw("Operator", "CompressLibPressio", "adios_to_libpressio_dtype", "unexpected datatype"); return pressio_byte_dtype; } @@ -127,18 +126,17 @@ pressio_param parse_adios_config_entry(std::string const &key) auto digit_len = key.find_first_of(']', current); if (digit_len == std::string::npos) { - helper::Throw( - "Operator", "CompressLibPressio", - "parse_adios_config_entry", "invalid substr"); + helper::Throw("Operator", "CompressLibPressio", + "parse_adios_config_entry", + "invalid substr"); } - p.index = - stoll(key.substr(current + 1, digit_len - (current + 1))); + p.index = stoll(key.substr(current + 1, digit_len - (current + 1))); current = digit_len + 2; if (key.at(digit_len + 1) != ':') { - helper::Throw( - "Operator", "CompressLibPressio", - "parse_adios_config_entry", "missing expected :"); + helper::Throw("Operator", "CompressLibPressio", + "parse_adios_config_entry", + "missing expected :"); } } else @@ -174,8 +172,7 @@ static pressio_compressor *adios_to_libpressio_compressor(Params const ¶ms) { helper::Throw("Operator", "CompressLibPressio", "adios_to_libpressio_compressor", - "compressor unavailable: " + - compressor_it->second); + "compressor unavailable: " + compressor_it->second); } // adios parameters have unique names and must have string type @@ -187,8 +184,7 @@ static pressio_compressor *adios_to_libpressio_compressor(Params const ¶ms) for (auto const ¶m : params) { auto parsed = parse_adios_config_entry(param.first); - std::map> *config = - nullptr; + std::map> *config = nullptr; switch (parsed.type) { case pressio_param::type::early: @@ -201,10 +197,9 @@ static pressio_compressor *adios_to_libpressio_compressor(Params const ¶ms) continue; case pressio_param::type::malformed: pressio_compressor_release(compressor); - helper::Throw( - "Operator", "CompressLibPressio", - "adios_to_libpressio_compressor", - "malformed parameter name " + param.first); + helper::Throw("Operator", "CompressLibPressio", + "adios_to_libpressio_compressor", + "malformed parameter name " + param.first); } if (parsed.has_index) @@ -232,19 +227,16 @@ static pressio_compressor *adios_to_libpressio_compressor(Params const ¶ms) std::vector entries; std::transform(entry.second.cbegin(), entry.second.cend(), std::back_inserter(entries), - [](decltype(*entry.second.begin()) s) { - return s.second.c_str(); - }); - pressio_options_set_strings(early_opts, entry.first.c_str(), - entries.size(), entries.data()); + [](decltype(*entry.second.begin()) s) { return s.second.c_str(); }); + pressio_options_set_strings(early_opts, entry.first.c_str(), entries.size(), + entries.data()); } } pressio_compressor_set_options(compressor, early_opts); pressio_options_free(early_opts); - pressio_options *compressor_options = - pressio_compressor_get_options(compressor); + pressio_options *compressor_options = pressio_compressor_get_options(compressor); for (auto const &entry : late) { @@ -259,15 +251,11 @@ static pressio_compressor *adios_to_libpressio_compressor(Params const ¶ms) std::vector entries; std::transform(entry.second.begin(), entry.second.end(), std::back_inserter(entries), - [](decltype(*entry.second.begin()) s) { - return s.second.c_str(); - }); - option = - pressio_option_new_strings(entries.data(), entries.size()); + [](decltype(*entry.second.begin()) s) { return s.second.c_str(); }); + option = pressio_option_new_strings(entries.data(), entries.size()); } - switch (pressio_options_cast_set(compressor_options, - entry.first.c_str(), option, + switch (pressio_options_cast_set(compressor_options, entry.first.c_str(), option, pressio_conversion_special)) { case pressio_options_key_set: @@ -275,17 +263,15 @@ static pressio_compressor *adios_to_libpressio_compressor(Params const ¶ms) case pressio_options_key_exists: pressio_options_free(compressor_options); pressio_compressor_release(compressor); - helper::Throw( - "Operator", "CompressLibPressio", - "adios_to_libpressio_compressor", - "enable to convert " + entry.first); + helper::Throw("Operator", "CompressLibPressio", + "adios_to_libpressio_compressor", + "enable to convert " + entry.first); case pressio_options_key_does_not_exist: pressio_options_free(compressor_options); pressio_compressor_release(compressor); - helper::Throw( - "Operator", "CompressLibPressio", - "adios_to_libpressio_compressor", - "unexpected option " + entry.first); + helper::Throw("Operator", "CompressLibPressio", + "adios_to_libpressio_compressor", + "unexpected option " + entry.first); } pressio_option_free(option); } @@ -294,9 +280,9 @@ static pressio_compressor *adios_to_libpressio_compressor(Params const ¶ms) return compressor; } - helper::Throw( - "Operator", "CompressLibPressio", "adios_to_libpressio_compressor", - "missing required \"compressor_id\" setting"); + helper::Throw("Operator", "CompressLibPressio", + "adios_to_libpressio_compressor", + "missing required \"compressor_id\" setting"); return 0; } @@ -305,8 +291,7 @@ CompressLibPressio::CompressLibPressio(const Params ¶meters) { } size_t CompressLibPressio::Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) + const Dims &blockCount, const DataType type, char *bufferOut) { const uint8_t bufferVersion = 1; size_t bufferOutOffset = 0; @@ -322,21 +307,17 @@ size_t CompressLibPressio::Operate(const char *dataIn, const Dims &blockStart, PutParameter(bufferOut, bufferOutOffset, d); } PutParameter(bufferOut, bufferOutOffset, type); - PutParameter(bufferOut, bufferOutOffset, - static_cast(pressio_major_version())); - PutParameter(bufferOut, bufferOutOffset, - static_cast(pressio_minor_version())); - PutParameter(bufferOut, bufferOutOffset, - static_cast(pressio_patch_version())); + PutParameter(bufferOut, bufferOutOffset, static_cast(pressio_major_version())); + PutParameter(bufferOut, bufferOutOffset, static_cast(pressio_minor_version())); + PutParameter(bufferOut, bufferOutOffset, static_cast(pressio_patch_version())); PutParameters(bufferOut, bufferOutOffset, m_Parameters); // zfp V1 metadata end auto inputs_dims = adios_to_libpressio_dims(blockCount); - pressio_data *input_buf = pressio_data_new_nonowning( - adios_to_libpressio_dtype(type), const_cast(dataIn), - inputs_dims.size(), inputs_dims.data()); - pressio_data *output_buf = - pressio_data_new_empty(pressio_byte_dtype, 0, nullptr); + pressio_data *input_buf = + pressio_data_new_nonowning(adios_to_libpressio_dtype(type), const_cast(dataIn), + inputs_dims.size(), inputs_dims.data()); + pressio_data *output_buf = pressio_data_new_empty(pressio_byte_dtype, 0, nullptr); pressio_compressor *compressor = nullptr; try { @@ -346,9 +327,8 @@ size_t CompressLibPressio::Operate(const char *dataIn, const Dims &blockStart, { pressio_data_free(input_buf); pressio_data_free(output_buf); - helper::Throw( - "Operator", "CompressLibPressio", "Operate", - "adios_to_libpressio_compressor failed"); + helper::Throw("Operator", "CompressLibPressio", "Operate", + "adios_to_libpressio_compressor failed"); } if (pressio_compressor_compress(compressor, input_buf, output_buf) != 0) @@ -372,18 +352,15 @@ size_t CompressLibPressio::Operate(const char *dataIn, const Dims &blockStart, return bufferOutOffset; } -size_t CompressLibPressio::InverseOperate(const char *bufferIn, - const size_t sizeIn, char *dataOut) +size_t CompressLibPressio::InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) { size_t bufferInOffset = 1; // skip operator type - const uint8_t bufferVersion = - GetParameter(bufferIn, bufferInOffset); + const uint8_t bufferVersion = GetParameter(bufferIn, bufferInOffset); bufferInOffset += 2; // skip two reserved bytes if (bufferVersion == 1) { - return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, - dataOut); + return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, dataOut); } else if (bufferVersion == 2) { @@ -392,8 +369,7 @@ size_t CompressLibPressio::InverseOperate(const char *bufferIn, } else { - helper::Throw("Operator", "CompressLibPressio", - "InverseOperate", + helper::Throw("Operator", "CompressLibPressio", "InverseOperate", "invalid LibPressio buffer version"); } @@ -402,19 +378,17 @@ size_t CompressLibPressio::InverseOperate(const char *bufferIn, bool CompressLibPressio::IsDataTypeValid(const DataType type) const { - if (type == DataType::Int8 || type == DataType::UInt8 || - type == DataType::Int16 || type == DataType::UInt16 || - type == DataType::Int32 || type == DataType::UInt32 || - type == DataType::Int64 || type == DataType::UInt64 || - type == DataType::Float || type == DataType::Double) + if (type == DataType::Int8 || type == DataType::UInt8 || type == DataType::Int16 || + type == DataType::UInt16 || type == DataType::Int32 || type == DataType::UInt32 || + type == DataType::Int64 || type == DataType::UInt64 || type == DataType::Float || + type == DataType::Double) { return true; } return false; } -size_t CompressLibPressio::DecompressV1(const char *bufferIn, - const size_t sizeIn, char *dataOut) +size_t CompressLibPressio::DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut) { // Do NOT remove even if the buffer version is updated. Data might be still // in lagacy formats. This function must be kept for backward compatibility. @@ -430,22 +404,20 @@ size_t CompressLibPressio::DecompressV1(const char *bufferIn, blockCount[i] = GetParameter(bufferIn, bufferInOffset); } const DataType type = GetParameter(bufferIn, bufferInOffset); - m_VersionInfo = - " Data is compressed using LibPressio Version " + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + - ". Please make sure a compatible version is used for decompression."; + m_VersionInfo = " Data is compressed using LibPressio Version " + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + + ". Please make sure a compatible version is used for decompression."; const Params parameters = GetParameters(bufferIn, bufferInOffset); std::vector dims = adios_to_libpressio_dims(blockCount); - pressio_data *output_buf = pressio_data_new_owning( - adios_to_libpressio_dtype(type), dims.size(), dims.data()); + pressio_data *output_buf = + pressio_data_new_owning(adios_to_libpressio_dtype(type), dims.size(), dims.data()); size_t newSizeIn = sizeIn - bufferInOffset; pressio_data *input_buf = pressio_data_new_nonowning( - pressio_byte_dtype, const_cast(bufferIn + bufferInOffset), 1, - &newSizeIn); + pressio_byte_dtype, const_cast(bufferIn + bufferInOffset), 1, &newSizeIn); pressio_compressor *compressor = nullptr; try @@ -456,18 +428,18 @@ size_t CompressLibPressio::DecompressV1(const char *bufferIn, { pressio_data_free(input_buf); pressio_data_free(output_buf); - helper::Throw("Operator", "CompressLibPressio", - "DecompressV1", m_VersionInfo); + helper::Throw("Operator", "CompressLibPressio", "DecompressV1", + m_VersionInfo); } if (pressio_compressor_decompress(compressor, input_buf, output_buf) != 0) { pressio_data_free(input_buf); pressio_data_free(output_buf); - helper::Throw( - "Operator", "CompressLibPressio", "DecompressV1", - std::string("pressio_compressor_decompress: ") + - pressio_compressor_error_msg(compressor) + m_VersionInfo); + helper::Throw("Operator", "CompressLibPressio", "DecompressV1", + std::string("pressio_compressor_decompress: ") + + pressio_compressor_error_msg(compressor) + + m_VersionInfo); } size_t size_in_bytes = 0; diff --git a/source/adios2/operator/compress/CompressLibPressio.h b/source/adios2/operator/compress/CompressLibPressio.h index ccff27d491..5345a2d640 100644 --- a/source/adios2/operator/compress/CompressLibPressio.h +++ b/source/adios2/operator/compress/CompressLibPressio.h @@ -39,9 +39,8 @@ class CompressLibPressio : public Operator * @param bufferOut * @return size of compressed buffer */ - size_t Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) final; + size_t Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) final; /** * @param bufferIn @@ -49,8 +48,7 @@ class CompressLibPressio : public Operator * @param dataOut * @return size of decompressed buffer */ - size_t InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) final; + size_t InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) final; bool IsDataTypeValid(const DataType type) const final; @@ -64,8 +62,7 @@ class CompressLibPressio : public Operator * @param dataOut : decompressed data buffer * @return : number of bytes in dataOut */ - size_t DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut); + size_t DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut); std::string m_VersionInfo; }; diff --git a/source/adios2/operator/compress/CompressMGARD.cpp b/source/adios2/operator/compress/CompressMGARD.cpp index 7b22456426..276813d08a 100644 --- a/source/adios2/operator/compress/CompressMGARD.cpp +++ b/source/adios2/operator/compress/CompressMGARD.cpp @@ -27,9 +27,8 @@ CompressMGARD::CompressMGARD(const Params ¶meters) { } -size_t CompressMGARD::Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) +size_t CompressMGARD::Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) { const uint8_t bufferVersion = 1; size_t bufferOutOffset = 0; @@ -41,10 +40,9 @@ size_t CompressMGARD::Operate(const char *dataIn, const Dims &blockStart, const size_t ndims = convertedDims.size(); if (ndims > 5) { - helper::Throw( - "Operator", "CompressMGARD", "Operate", - "MGARD does not support data in " + std::to_string(ndims) + - " dimensions"); + helper::Throw("Operator", "CompressMGARD", "Operate", + "MGARD does not support data in " + + std::to_string(ndims) + " dimensions"); } // mgard V1 metadata @@ -54,12 +52,9 @@ size_t CompressMGARD::Operate(const char *dataIn, const Dims &blockStart, PutParameter(bufferOut, bufferOutOffset, d); } PutParameter(bufferOut, bufferOutOffset, type); - PutParameter(bufferOut, bufferOutOffset, - static_cast(MGARD_VERSION_MAJOR)); - PutParameter(bufferOut, bufferOutOffset, - static_cast(MGARD_VERSION_MINOR)); - PutParameter(bufferOut, bufferOutOffset, - static_cast(MGARD_VERSION_PATCH)); + PutParameter(bufferOut, bufferOutOffset, static_cast(MGARD_VERSION_MAJOR)); + PutParameter(bufferOut, bufferOutOffset, static_cast(MGARD_VERSION_MINOR)); + PutParameter(bufferOut, bufferOutOffset, static_cast(MGARD_VERSION_PATCH)); // mgard V1 metadata end // set type @@ -82,9 +77,8 @@ size_t CompressMGARD::Operate(const char *dataIn, const Dims &blockStart, } else { - helper::Throw( - "Operator", "CompressMGARD", "Operate", - "MGARD only supports float and double types"); + helper::Throw("Operator", "CompressMGARD", "Operate", + "MGARD only supports float and double types"); } // set type end @@ -125,9 +119,8 @@ size_t CompressMGARD::Operate(const char *dataIn, const Dims &blockStart, } if (!hasTolerance) { - helper::Throw( - "Operator", "CompressMGARD", "Operate", - "missing mandatory parameter tolerance / accuracy"); + helper::Throw("Operator", "CompressMGARD", "Operate", + "missing mandatory parameter tolerance / accuracy"); } auto itSParameter = m_Parameters.find("s"); if (itSParameter != m_Parameters.end()) @@ -148,8 +141,7 @@ size_t CompressMGARD::Operate(const char *dataIn, const Dims &blockStart, } // let mgard know the output buffer size - size_t sizeOut = - helper::GetTotalSize(blockCount, helper::GetDataTypeSize(type)); + size_t sizeOut = helper::GetTotalSize(blockCount, helper::GetDataTypeSize(type)); if (sizeOut < thresholdSize) { @@ -161,8 +153,8 @@ size_t CompressMGARD::Operate(const char *dataIn, const Dims &blockStart, PutParameter(bufferOut, bufferOutOffset, true); void *compressedData = bufferOut + bufferOutOffset; - mgard_x::compress(mgardDim, mgardType, mgardCount, tolerance, s, - errorBoundType, dataIn, compressedData, sizeOut, true); + mgard_x::compress(mgardDim, mgardType, mgardCount, tolerance, s, errorBoundType, dataIn, + compressedData, sizeOut, true); bufferOutOffset += sizeOut; return bufferOutOffset; @@ -170,8 +162,7 @@ size_t CompressMGARD::Operate(const char *dataIn, const Dims &blockStart, size_t CompressMGARD::GetHeaderSize() const { return headerSize; } -size_t CompressMGARD::DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressMGARD::DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut) { // Do NOT remove even if the buffer version is updated. Data might be still // in lagacy formats. This function must be kept for backward compatibility. @@ -187,17 +178,15 @@ size_t CompressMGARD::DecompressV1(const char *bufferIn, const size_t sizeIn, blockCount[i] = GetParameter(bufferIn, bufferInOffset); } const DataType type = GetParameter(bufferIn, bufferInOffset); - m_VersionInfo = - " Data is compressed using MGARD Version " + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + - ". Please make sure a compatible version is used for decompression."; + m_VersionInfo = " Data is compressed using MGARD Version " + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + + ". Please make sure a compatible version is used for decompression."; const bool isCompressed = GetParameter(bufferIn, bufferInOffset); - size_t sizeOut = - helper::GetTotalSize(blockCount, helper::GetDataTypeSize(type)); + size_t sizeOut = helper::GetTotalSize(blockCount, helper::GetDataTypeSize(type)); if (type == DataType::FloatComplex || type == DataType::DoubleComplex) { @@ -209,13 +198,13 @@ size_t CompressMGARD::DecompressV1(const char *bufferIn, const size_t sizeIn, try { void *dataOutVoid = dataOut; - mgard_x::decompress(bufferIn + bufferInOffset, - sizeIn - bufferInOffset, dataOutVoid, true); + mgard_x::decompress(bufferIn + bufferInOffset, sizeIn - bufferInOffset, dataOutVoid, + true); } catch (...) { - helper::Throw("Operator", "CompressMGARD", - "DecompressV1", m_VersionInfo); + helper::Throw("Operator", "CompressMGARD", "DecompressV1", + m_VersionInfo); } return sizeOut; } @@ -224,19 +213,16 @@ size_t CompressMGARD::DecompressV1(const char *bufferIn, const size_t sizeIn, return 0; } -size_t CompressMGARD::InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressMGARD::InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) { size_t bufferInOffset = 1; // skip operator type - const uint8_t bufferVersion = - GetParameter(bufferIn, bufferInOffset); + const uint8_t bufferVersion = GetParameter(bufferIn, bufferInOffset); bufferInOffset += 2; // skip two reserved bytes headerSize = bufferInOffset; if (bufferVersion == 1) { - return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, - dataOut); + return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, dataOut); } else if (bufferVersion == 2) { @@ -245,8 +231,7 @@ size_t CompressMGARD::InverseOperate(const char *bufferIn, const size_t sizeIn, } else { - helper::Throw("Operator", "CompressMGARD", - "InverseOperate", + helper::Throw("Operator", "CompressMGARD", "InverseOperate", "invalid mgard buffer version"); } @@ -255,8 +240,8 @@ size_t CompressMGARD::InverseOperate(const char *bufferIn, const size_t sizeIn, bool CompressMGARD::IsDataTypeValid(const DataType type) const { - if (type == DataType::Double || type == DataType::Float || - type == DataType::DoubleComplex || type == DataType::FloatComplex) + if (type == DataType::Double || type == DataType::Float || type == DataType::DoubleComplex || + type == DataType::FloatComplex) { return true; } diff --git a/source/adios2/operator/compress/CompressMGARD.h b/source/adios2/operator/compress/CompressMGARD.h index a6824debff..3d4d8cd1dc 100644 --- a/source/adios2/operator/compress/CompressMGARD.h +++ b/source/adios2/operator/compress/CompressMGARD.h @@ -36,9 +36,8 @@ class CompressMGARD : public Operator * @param bufferOut * @return size of compressed buffer */ - size_t Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) final; + size_t Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) final; /** * @param bufferIn @@ -46,8 +45,7 @@ class CompressMGARD : public Operator * @param dataOut * @return size of decompressed buffer */ - size_t InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) final; + size_t InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) final; bool IsDataTypeValid(const DataType type) const final; @@ -64,8 +62,7 @@ class CompressMGARD : public Operator * @param dataOut : decompressed data buffer * @return : number of bytes in dataOut */ - size_t DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut); + size_t DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut); std::string m_VersionInfo; }; diff --git a/source/adios2/operator/compress/CompressMGARDPlus.cpp b/source/adios2/operator/compress/CompressMGARDPlus.cpp index 752091c87f..f5553eb348 100644 --- a/source/adios2/operator/compress/CompressMGARDPlus.cpp +++ b/source/adios2/operator/compress/CompressMGARDPlus.cpp @@ -26,8 +26,7 @@ CompressMGARDPlus::CompressMGARDPlus(const Params ¶meters) } size_t CompressMGARDPlus::Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) + const Dims &blockCount, const DataType type, char *bufferOut) { // Read ADIOS2 files from here @@ -37,9 +36,8 @@ size_t CompressMGARDPlus::Operate(const char *dataIn, const Dims &blockStart, auto &io = adios.DeclareIO("SubIO"); auto *engine = &io.Open(m_Parameters["MeshFile"], adios2::Mode::Read); auto var = io.InquireVariable(m_Parameters["MeshVariable"]); - std::vector data( - std::accumulate(var->m_Shape.begin(), var->m_Shape.end(), - sizeof(float), std::multiplies())); + std::vector data(std::accumulate(var->m_Shape.begin(), var->m_Shape.end(), + sizeof(float), std::multiplies())); engine->Get(*var, data); } // Read ADIOS2 files end, use data for your algorithm @@ -52,16 +50,15 @@ size_t CompressMGARDPlus::Operate(const char *dataIn, const Dims &blockStart, bufferOutOffset += 32; // TODO: reserve memory space CompressMGARD mgard(m_Parameters); - size_t mgardBufferSize = mgard.Operate(dataIn, blockStart, blockCount, type, - bufferOut + bufferOutOffset); + size_t mgardBufferSize = + mgard.Operate(dataIn, blockStart, blockCount, type, bufferOut + bufferOutOffset); if (mgardBufferSize == 0) { headerSize += (bufferOutOffset + mgard.GetHeaderSize()); return 0; } - if (*reinterpret_cast(bufferOut + bufferOutOffset) == - COMPRESS_MGARD) + if (*reinterpret_cast(bufferOut + bufferOutOffset) == COMPRESS_MGARD) { std::vector tmpDecompressBuffer( helper::GetTotalSize(blockCount, helper::GetDataTypeSize(type))); @@ -97,8 +94,7 @@ size_t CompressMGARDPlus::Operate(const char *dataIn, const Dims &blockStart, size_t CompressMGARDPlus::GetHeaderSize() const { return headerSize; } -size_t CompressMGARDPlus::DecompressV1(const char *bufferIn, - const size_t sizeIn, char *dataOut) +size_t CompressMGARDPlus::DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut) { // Do NOT remove even if the buffer version is updated. Data might be still // in lagacy formats. This function must be kept for backward compatibility. @@ -114,8 +110,8 @@ size_t CompressMGARDPlus::DecompressV1(const char *bufferIn, // memory space you reserved in Operate() CompressMGARD mgard(m_Parameters); - size_t sizeOut = mgard.InverseOperate(bufferIn + bufferInOffset, - sizeIn - bufferInOffset, dataOut); + size_t sizeOut = + mgard.InverseOperate(bufferIn + bufferInOffset, sizeIn - bufferInOffset, dataOut); // TODO: the regular decompressed buffer is in dataOut, with the size of // sizeOut. Here you may want to do your magic to change the decompressed @@ -125,19 +121,16 @@ size_t CompressMGARDPlus::DecompressV1(const char *bufferIn, return sizeOut; } -size_t CompressMGARDPlus::InverseOperate(const char *bufferIn, - const size_t sizeIn, char *dataOut) +size_t CompressMGARDPlus::InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) { size_t bufferInOffset = 1; // skip operator type - const uint8_t bufferVersion = - GetParameter(bufferIn, bufferInOffset); + const uint8_t bufferVersion = GetParameter(bufferIn, bufferInOffset); bufferInOffset += 2; // skip two reserved bytes headerSize = bufferInOffset; if (bufferVersion == 1) { - return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, - dataOut); + return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, dataOut); } else if (bufferVersion == 2) { @@ -146,8 +139,7 @@ size_t CompressMGARDPlus::InverseOperate(const char *bufferIn, } else { - helper::Throw("Operator", "CompressMGARDPlus", - "InverseOperate", + helper::Throw("Operator", "CompressMGARDPlus", "InverseOperate", "invalid mgard buffer version"); } @@ -156,8 +148,8 @@ size_t CompressMGARDPlus::InverseOperate(const char *bufferIn, bool CompressMGARDPlus::IsDataTypeValid(const DataType type) const { - if (type == DataType::Double || type == DataType::Float || - type == DataType::DoubleComplex || type == DataType::FloatComplex) + if (type == DataType::Double || type == DataType::Float || type == DataType::DoubleComplex || + type == DataType::FloatComplex) { return true; } diff --git a/source/adios2/operator/compress/CompressMGARDPlus.h b/source/adios2/operator/compress/CompressMGARDPlus.h index 33dbb55ced..07cc01ca76 100644 --- a/source/adios2/operator/compress/CompressMGARDPlus.h +++ b/source/adios2/operator/compress/CompressMGARDPlus.h @@ -36,9 +36,8 @@ class CompressMGARDPlus : public Operator * @param bufferOut * @return size of compressed buffer */ - size_t Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) final; + size_t Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) final; /** * @param bufferIn @@ -46,8 +45,7 @@ class CompressMGARDPlus : public Operator * @param dataOut * @return size of decompressed buffer */ - size_t InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) final; + size_t InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) final; bool IsDataTypeValid(const DataType type) const final; @@ -65,8 +63,7 @@ class CompressMGARDPlus : public Operator * @param dataOut : decompressed data buffer * @return : number of bytes in dataOut */ - size_t DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut); + size_t DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut); std::string m_VersionInfo; }; diff --git a/source/adios2/operator/compress/CompressNull.cpp b/source/adios2/operator/compress/CompressNull.cpp index 4fb7cb08b0..eb9e841c22 100644 --- a/source/adios2/operator/compress/CompressNull.cpp +++ b/source/adios2/operator/compress/CompressNull.cpp @@ -23,23 +23,20 @@ CompressNull::CompressNull(const Params ¶meters) { } -size_t CompressNull::Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType varType, - char *bufferOut) +size_t CompressNull::Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType varType, char *bufferOut) { const uint8_t bufferVersion = 1; size_t bufferOutOffset = 0; MakeCommonHeader(bufferOut, bufferOutOffset, bufferVersion); - size_t totalInputBytes = - helper::GetTotalSize(blockCount, helper::GetDataTypeSize(varType)); + size_t totalInputBytes = helper::GetTotalSize(blockCount, helper::GetDataTypeSize(varType)); PutParameter(bufferOut, bufferOutOffset, totalInputBytes); std::memcpy(bufferOut + bufferOutOffset, dataIn, totalInputBytes); bufferOutOffset += totalInputBytes; return bufferOutOffset; } -size_t CompressNull::InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressNull::InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) { size_t bufferInOffset = 4; // skip common header diff --git a/source/adios2/operator/compress/CompressNull.h b/source/adios2/operator/compress/CompressNull.h index d772601215..95c5f0ed4b 100644 --- a/source/adios2/operator/compress/CompressNull.h +++ b/source/adios2/operator/compress/CompressNull.h @@ -28,12 +28,10 @@ class CompressNull : public Operator ~CompressNull() = default; - size_t Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) final; + size_t Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) final; - size_t InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) final; + size_t InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) final; bool IsDataTypeValid(const DataType type) const final; }; diff --git a/source/adios2/operator/compress/CompressPNG.cpp b/source/adios2/operator/compress/CompressPNG.cpp index 823ab48604..94a0348032 100644 --- a/source/adios2/operator/compress/CompressPNG.cpp +++ b/source/adios2/operator/compress/CompressPNG.cpp @@ -48,9 +48,8 @@ CompressPNG::CompressPNG(const Params ¶meters) { } -size_t CompressPNG::Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) +size_t CompressPNG::Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) { size_t bufferOutOffset = 0; const uint8_t bufferVersion = 1; @@ -61,8 +60,7 @@ size_t CompressPNG::Operate(const char *dataIn, const Dims &blockStart, bufferOutOffset += sizeof(size_t) + 3; auto lf_Write = [](png_structp png_ptr, png_bytep data, png_size_t length) { - DestInfo *pDestInfo = - reinterpret_cast(png_get_io_ptr(png_ptr)); + DestInfo *pDestInfo = reinterpret_cast(png_get_io_ptr(png_ptr)); std::memcpy(pDestInfo->BufferOut + pDestInfo->Offset, data, length); pDestInfo->Offset += length; }; @@ -92,8 +90,8 @@ size_t CompressPNG::Operate(const char *dataIn, const Dims &blockStart, if (key == "compression_level") { - compressionLevel = static_cast(helper::StringTo( - value, "when setting PNG level parameter\n")); + compressionLevel = static_cast( + helper::StringTo(value, "when setting PNG level parameter\n")); if (compressionLevel < 1 || compressionLevel > 9) { @@ -123,8 +121,8 @@ size_t CompressPNG::Operate(const char *dataIn, const Dims &blockStart, } else if (key == "bit_depth") { - bitDepth = static_cast(helper::StringTo( - value, "when setting PNG bit_depth parameter\n")); + bitDepth = static_cast( + helper::StringTo(value, "when setting PNG bit_depth parameter\n")); } } @@ -132,32 +130,29 @@ size_t CompressPNG::Operate(const char *dataIn, const Dims &blockStart, { helper::Throw( "Operator", "CompressPNG", "Operate", - "bit_depth " + std::to_string(bitDepth) + " and color_type " + - colorTypeStr + + "bit_depth " + std::to_string(bitDepth) + " and color_type " + colorTypeStr + " combination is not allowed by libpng, in call to ADIOS2 PNG " "compression"); } - png_structp pngWrite = png_create_write_struct(PNG_LIBPNG_VER_STRING, - nullptr, nullptr, nullptr); + png_structp pngWrite = + png_create_write_struct(PNG_LIBPNG_VER_STRING, nullptr, nullptr, nullptr); png_infop pngInfo = png_create_info_struct(pngWrite); - const uint32_t bytesPerPixel = - ndims == 3 ? static_cast(blockCount[2]) - : static_cast(helper::GetDataTypeSize(type)); + const uint32_t bytesPerPixel = ndims == 3 + ? static_cast(blockCount[2]) + : static_cast(helper::GetDataTypeSize(type)); const uint32_t width = static_cast(blockCount[1]); const uint32_t height = static_cast(blockCount[0]); - png_set_IHDR(pngWrite, pngInfo, width, height, bitDepth, colorType, - PNG_INTERLACE_NONE, PNG_COMPRESSION_TYPE_DEFAULT, - PNG_FILTER_TYPE_DEFAULT); + png_set_IHDR(pngWrite, pngInfo, width, height, bitDepth, colorType, PNG_INTERLACE_NONE, + PNG_COMPRESSION_TYPE_DEFAULT, PNG_FILTER_TYPE_DEFAULT); if (setjmp(png_jmpbuf(pngWrite))) { - helper::Throw( - "Operator", "CompressPNG", "Operate", - "libpng detected an error in ADIOS2 PNG Compress"); + helper::Throw("Operator", "CompressPNG", "Operate", + "libpng detected an error in ADIOS2 PNG Compress"); } png_set_compression_level(pngWrite, compressionLevel); @@ -166,8 +161,8 @@ size_t CompressPNG::Operate(const char *dataIn, const Dims &blockStart, std::vector rows(height); for (size_t r = 0; r < height; ++r) { - rows[r] = reinterpret_cast(const_cast(dataIn)) + - r * width * bytesPerPixel; + rows[r] = + reinterpret_cast(const_cast(dataIn)) + r * width * bytesPerPixel; } png_set_rows(pngWrite, pngInfo, rows.data()); @@ -183,30 +178,24 @@ size_t CompressPNG::Operate(const char *dataIn, const Dims &blockStart, png_destroy_write_struct(&pngWrite, &pngInfo); PutParameter(bufferOut, paramOffset, destInfo.Offset); - PutParameter(bufferOut, paramOffset, - static_cast(PNG_LIBPNG_VER_MAJOR)); - PutParameter(bufferOut, paramOffset, - static_cast(PNG_LIBPNG_VER_MINOR)); - PutParameter(bufferOut, paramOffset, - static_cast(PNG_LIBPNG_VER_RELEASE)); + PutParameter(bufferOut, paramOffset, static_cast(PNG_LIBPNG_VER_MAJOR)); + PutParameter(bufferOut, paramOffset, static_cast(PNG_LIBPNG_VER_MINOR)); + PutParameter(bufferOut, paramOffset, static_cast(PNG_LIBPNG_VER_RELEASE)); return destInfo.Offset; } -size_t CompressPNG::InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressPNG::InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) { size_t bufferInOffset = 1; // skip operator type - const uint8_t bufferVersion = - GetParameter(bufferIn, bufferInOffset); + const uint8_t bufferVersion = GetParameter(bufferIn, bufferInOffset); bufferInOffset += 2; // skip two reserved bytes if (bufferVersion == 1) { // pass in the whole buffer as there is absolute positions saved in the // buffer to determine the offsets and lengths for batches - return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, - dataOut); + return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, dataOut); } else if (bufferVersion == 2) { @@ -215,8 +204,7 @@ size_t CompressPNG::InverseOperate(const char *bufferIn, const size_t sizeIn, } else { - helper::Throw("Operator", "CompressPNG", - "InverseOperate", + helper::Throw("Operator", "CompressPNG", "InverseOperate", "invalid png buffer version"); } @@ -225,8 +213,7 @@ size_t CompressPNG::InverseOperate(const char *bufferIn, const size_t sizeIn, bool CompressPNG::IsDataTypeValid(const DataType type) const { return true; } -size_t CompressPNG::DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressPNG::DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut) { // Do NOT remove even if the buffer version is updated. Data might be still // in lagacy formats. This function must be kept for backward compatibility. @@ -236,38 +223,35 @@ size_t CompressPNG::DecompressV1(const char *bufferIn, const size_t sizeIn, size_t bufferInOffset = 0; const size_t outSize = GetParameter(bufferIn, bufferInOffset); - m_VersionInfo = - " Data is compressed using PNG Version " + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + - ". Please make sure a compatible version is used for decompression."; + m_VersionInfo = " Data is compressed using PNG Version " + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + + ". Please make sure a compatible version is used for decompression."; png_image image; std::memset(&image, 0, sizeof(image)); image.version = PNG_IMAGE_VERSION; - int result = png_image_begin_read_from_memory( - &image, bufferIn + bufferInOffset, sizeIn - bufferInOffset); + int result = png_image_begin_read_from_memory(&image, bufferIn + bufferInOffset, + sizeIn - bufferInOffset); if (result == 0) { - helper::Throw( - "Operator", "CompressPNG", "DecompressV1", - "png_image_begin_read_from_memory failed in call " - "to ADIOS2 PNG Decompress." + - m_VersionInfo); + helper::Throw("Operator", "CompressPNG", "DecompressV1", + "png_image_begin_read_from_memory failed in call " + "to ADIOS2 PNG Decompress." + + m_VersionInfo); } // TODO might be needed from parameters? result = png_image_finish_read(&image, nullptr, dataOut, 0, nullptr); if (result == 0) { - helper::Throw( - "Operator", "CompressPNG", "DecompressV1", - "png_image_finish_read_from_memory failed in call " - "to ADIOS2 PNG Decompress." + - m_VersionInfo); + helper::Throw("Operator", "CompressPNG", "DecompressV1", + "png_image_finish_read_from_memory failed in call " + "to ADIOS2 PNG Decompress." + + m_VersionInfo); } return outSize; } diff --git a/source/adios2/operator/compress/CompressPNG.h b/source/adios2/operator/compress/CompressPNG.h index bbc37ae11a..2e793f6aab 100644 --- a/source/adios2/operator/compress/CompressPNG.h +++ b/source/adios2/operator/compress/CompressPNG.h @@ -41,9 +41,8 @@ class CompressPNG : public Operator * @param bufferOut * @return size of compressed buffer */ - size_t Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) final; + size_t Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) final; /** * @param bufferIn @@ -51,8 +50,7 @@ class CompressPNG : public Operator * @param dataOut * @return size of decompressed buffer */ - size_t InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) final; + size_t InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) final; bool IsDataTypeValid(const DataType type) const final; @@ -66,8 +64,7 @@ class CompressPNG : public Operator * @param dataOut : decompressed data buffer * @return : number of bytes in dataOut */ - size_t DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut); + size_t DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut); /** * check status from PNG compression and decompression functions diff --git a/source/adios2/operator/compress/CompressSZ.cpp b/source/adios2/operator/compress/CompressSZ.cpp index f2363c6190..e0d030e9af 100644 --- a/source/adios2/operator/compress/CompressSZ.cpp +++ b/source/adios2/operator/compress/CompressSZ.cpp @@ -32,9 +32,8 @@ CompressSZ::CompressSZ(const Params ¶meters) { } -size_t CompressSZ::Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType varType, - char *bufferOut) +size_t CompressSZ::Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType varType, char *bufferOut) { const uint8_t bufferVersion = 2; size_t bufferOutOffset = 0; @@ -53,8 +52,7 @@ size_t CompressSZ::Operate(const char *dataIn, const Dims &blockStart, PutParameter(bufferOut, bufferOutOffset, varType); for (uint8_t i = 0; i < 4; ++i) { - PutParameter(bufferOut, bufferOutOffset, - static_cast(versionNumber[i])); + PutParameter(bufferOut, bufferOutOffset, static_cast(versionNumber[i])); } // sz V2 metadata end @@ -76,8 +74,7 @@ size_t CompressSZ::Operate(const char *dataIn, const Dims &blockStart, sz.relBoundRatio = 1E-3; sz.psnr = 80.0; sz.pw_relBoundRatio = 1E-5; - sz.segment_size = - static_cast(std::pow(5., static_cast(ndims))); + sz.segment_size = static_cast(std::pow(5., static_cast(ndims))); sz.pwr_type = SZ_PWR_MIN_TYPE; /* SZ parameters */ @@ -212,8 +209,7 @@ size_t CompressSZ::Operate(const char *dataIn, const Dims &blockStart, } sz.pwr_type = pwr_type; } - else if ((it->first == "abs") || (it->first == "absolute") || - (it->first == "accuracy")) + else if ((it->first == "abs") || (it->first == "absolute") || (it->first == "accuracy")) { sz.errorBoundMode = ABS; sz.absErrBound = std::stod(it->second); @@ -223,8 +219,8 @@ size_t CompressSZ::Operate(const char *dataIn, const Dims &blockStart, sz.errorBoundMode = REL; sz.relBoundRatio = std::stof(it->second); } - else if ((it->first == "pw") || (it->first == "pwr") || - (it->first == "pwrel") || (it->first == "pwrelative")) + else if ((it->first == "pw") || (it->first == "pwr") || (it->first == "pwrel") || + (it->first == "pwrelative")) { sz.errorBoundMode = PW_REL; sz.pw_relBoundRatio = std::stof(it->second); @@ -257,9 +253,8 @@ size_t CompressSZ::Operate(const char *dataIn, const Dims &blockStart, } else { - helper::Throw( - "Operator", "CompressSZ", "Operate", - "SZ compressor only support float or double types"); + helper::Throw("Operator", "CompressSZ", "Operate", + "SZ compressor only support float or double types"); } convertedDims = ConvertDims(blockCount, varType, 5, true, 0); @@ -275,9 +270,9 @@ size_t CompressSZ::Operate(const char *dataIn, const Dims &blockStart, { SZ_Init_Params(&sz); } - auto *szBuffer = SZ_compress( - dtype, const_cast(dataIn), &szBufferSize, convertedDims[0], - convertedDims[1], convertedDims[2], convertedDims[3], convertedDims[4]); + auto *szBuffer = + SZ_compress(dtype, const_cast(dataIn), &szBufferSize, convertedDims[0], + convertedDims[1], convertedDims[2], convertedDims[3], convertedDims[4]); SZ_Finalize(); m_Mutex.unlock(); @@ -285,8 +280,7 @@ size_t CompressSZ::Operate(const char *dataIn, const Dims &blockStart, helper::GetTotalSize(blockCount, helper::GetDataTypeSize(varType))) { CompressNull c({}); - bufferOutOffset = - c.Operate(dataIn, blockStart, blockCount, varType, bufferOut); + bufferOutOffset = c.Operate(dataIn, blockStart, blockCount, varType, bufferOut); } else { @@ -300,23 +294,19 @@ size_t CompressSZ::Operate(const char *dataIn, const Dims &blockStart, return bufferOutOffset; } -size_t CompressSZ::InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressSZ::InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) { size_t bufferInOffset = 1; // skip operator type - const uint8_t bufferVersion = - GetParameter(bufferIn, bufferInOffset); + const uint8_t bufferVersion = GetParameter(bufferIn, bufferInOffset); bufferInOffset += 2; // skip two reserved bytes if (bufferVersion == 2) { - return DecompressV2(bufferIn + bufferInOffset, sizeIn - bufferInOffset, - dataOut); + return DecompressV2(bufferIn + bufferInOffset, sizeIn - bufferInOffset, dataOut); } else if (bufferVersion == 1) { - return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, - dataOut); + return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, dataOut); } else if (bufferVersion == 3) { @@ -325,8 +315,7 @@ size_t CompressSZ::InverseOperate(const char *bufferIn, const size_t sizeIn, } else { - helper::Throw("Operator", "CompressSZ", - "InverseOperate", + helper::Throw("Operator", "CompressSZ", "InverseOperate", "invalid sz buffer version"); } @@ -335,16 +324,15 @@ size_t CompressSZ::InverseOperate(const char *bufferIn, const size_t sizeIn, bool CompressSZ::IsDataTypeValid(const DataType type) const { - if (type == DataType::Float || type == DataType::Double || - type == DataType::FloatComplex || type == DataType::DoubleComplex) + if (type == DataType::Float || type == DataType::Double || type == DataType::FloatComplex || + type == DataType::DoubleComplex) { return true; } return false; } -size_t CompressSZ::DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressSZ::DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut) { // Do NOT remove even if the buffer version is updated. Data might be still // in lagacy formats. This function must be kept for backward compatibility. @@ -361,13 +349,12 @@ size_t CompressSZ::DecompressV1(const char *bufferIn, const size_t sizeIn, } const DataType type = GetParameter(bufferIn, bufferInOffset); - m_VersionInfo = - " Data is compressed using SZ Version " + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + - ". Please make sure a compatible version is used for decompression."; + m_VersionInfo = " Data is compressed using SZ Version " + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + + ". Please make sure a compatible version is used for decompression."; Dims convertedDims = ConvertDims(blockCount, type, 4, true, 1); @@ -388,28 +375,23 @@ size_t CompressSZ::DecompressV1(const char *bufferIn, const size_t sizeIn, } else { - helper::Throw( - "Operator", "CompressSZ", "DecompressV1", - "SZ compressor only support float or double types"); + helper::Throw("Operator", "CompressSZ", "DecompressV1", + "SZ compressor only support float or double types"); } - const size_t dataSizeBytes = - helper::GetTotalSize(convertedDims, dataTypeSize); + const size_t dataSizeBytes = helper::GetTotalSize(convertedDims, dataTypeSize); m_Mutex.lock(); - void *result = - SZ_decompress(dtype, - reinterpret_cast( - const_cast(bufferIn + bufferInOffset)), - sizeIn - bufferInOffset, 0, convertedDims[0], - convertedDims[1], convertedDims[2], convertedDims[3]); + void *result = SZ_decompress( + dtype, reinterpret_cast(const_cast(bufferIn + bufferInOffset)), + sizeIn - bufferInOffset, 0, convertedDims[0], convertedDims[1], convertedDims[2], + convertedDims[3]); SZ_Finalize(); m_Mutex.unlock(); if (result == nullptr) { - helper::Throw("Operator", "CompressSZ", - "DecompressV1", m_VersionInfo); + helper::Throw("Operator", "CompressSZ", "DecompressV1", m_VersionInfo); } std::memcpy(dataOut, result, dataSizeBytes); free(result); @@ -417,8 +399,7 @@ size_t CompressSZ::DecompressV1(const char *bufferIn, const size_t sizeIn, return dataSizeBytes; } -size_t CompressSZ::DecompressV2(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressSZ::DecompressV2(const char *bufferIn, const size_t sizeIn, char *dataOut) { // Do NOT remove even if the buffer version is updated. Data might be still // in lagacy formats. This function must be kept for backward compatibility. @@ -435,13 +416,12 @@ size_t CompressSZ::DecompressV2(const char *bufferIn, const size_t sizeIn, } const DataType type = GetParameter(bufferIn, bufferInOffset); - m_VersionInfo = - " Data is compressed using SZ Version " + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + - ". Please make sure a compatible version is used for decompression."; + m_VersionInfo = " Data is compressed using SZ Version " + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + + ". Please make sure a compatible version is used for decompression."; // Get type info int dtype = 0; @@ -460,30 +440,25 @@ size_t CompressSZ::DecompressV2(const char *bufferIn, const size_t sizeIn, } else { - helper::Throw( - "Operator", "CompressSZ", "DecompressV2", - "SZ compressor only supports float or double types"); + helper::Throw("Operator", "CompressSZ", "DecompressV2", + "SZ compressor only supports float or double types"); } const size_t dataSizeBytes = helper::GetTotalSize(blockCount, dataTypeSize); - Dims convertedDims = - ConvertDims(blockCount, helper::GetDataType(), 5, true, 0); + Dims convertedDims = ConvertDims(blockCount, helper::GetDataType(), 5, true, 0); m_Mutex.lock(); void *result = SZ_decompress( - dtype, - reinterpret_cast( - const_cast(bufferIn + bufferInOffset)), - sizeIn - bufferInOffset, convertedDims[0], convertedDims[1], - convertedDims[2], convertedDims[3], convertedDims[4]); + dtype, reinterpret_cast(const_cast(bufferIn + bufferInOffset)), + sizeIn - bufferInOffset, convertedDims[0], convertedDims[1], convertedDims[2], + convertedDims[3], convertedDims[4]); SZ_Finalize(); m_Mutex.unlock(); if (result == nullptr) { - helper::Throw("Operator", "CompressSZ", - "DecompressV2", m_VersionInfo); + helper::Throw("Operator", "CompressSZ", "DecompressV2", m_VersionInfo); } std::memcpy(dataOut, result, dataSizeBytes); free(result); diff --git a/source/adios2/operator/compress/CompressSZ.h b/source/adios2/operator/compress/CompressSZ.h index 686829defd..0bcc95b0c5 100644 --- a/source/adios2/operator/compress/CompressSZ.h +++ b/source/adios2/operator/compress/CompressSZ.h @@ -40,9 +40,8 @@ class CompressSZ : public Operator * @param bufferOut * @return size of compressed buffer */ - size_t Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) final; + size_t Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) final; /** * @param bufferIn @@ -50,8 +49,7 @@ class CompressSZ : public Operator * @param dataOut * @return size of decompressed buffer */ - size_t InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) final; + size_t InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) final; bool IsDataTypeValid(const DataType type) const final; @@ -65,8 +63,7 @@ class CompressSZ : public Operator * @param dataOut : decompressed data buffer * @return : number of bytes in dataOut */ - size_t DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut); + size_t DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut); /** * Decompress function for V2 buffer. Do NOT remove even if the buffer @@ -77,8 +74,7 @@ class CompressSZ : public Operator * @param dataOut : decompressed data buffer * @return : number of bytes in dataOut */ - size_t DecompressV2(const char *bufferIn, const size_t sizeIn, - char *dataOut); + size_t DecompressV2(const char *bufferIn, const size_t sizeIn, char *dataOut); std::string m_VersionInfo; static std::mutex m_Mutex; diff --git a/source/adios2/operator/compress/CompressSirius.cpp b/source/adios2/operator/compress/CompressSirius.cpp index 339e2afd98..328cef4497 100644 --- a/source/adios2/operator/compress/CompressSirius.cpp +++ b/source/adios2/operator/compress/CompressSirius.cpp @@ -19,8 +19,7 @@ namespace compress { std::unordered_map CompressSirius::m_CurrentTierMap; -std::vector>> - CompressSirius::m_TierBuffersMap; +std::vector>> CompressSirius::m_TierBuffersMap; int CompressSirius::m_CurrentTier; std::vector> CompressSirius::m_TierBuffers; int CompressSirius::m_Tiers = 0; @@ -34,9 +33,8 @@ CompressSirius::CompressSirius(const Params ¶meters) m_TierBuffers.resize(m_Tiers); } -size_t CompressSirius::Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType varType, - char *bufferOut) +size_t CompressSirius::Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType varType, char *bufferOut) { const uint8_t bufferVersion = 1; size_t bufferOutOffset = 0; @@ -58,8 +56,7 @@ size_t CompressSirius::Operate(const char *dataIn, const Dims &blockStart, PutParameter(bufferOut, bufferOutOffset, varType); // sirius V1 metadata end - size_t totalInputBytes = - helper::GetTotalSize(blockCount, helper::GetDataTypeSize(varType)); + size_t totalInputBytes = helper::GetTotalSize(blockCount, helper::GetDataTypeSize(varType)); // if called from Tier 0 sub-engine, then compute tier buffers and put into // m_TierBuffers @@ -69,14 +66,12 @@ size_t CompressSirius::Operate(const char *dataIn, const Dims &blockStart, for (size_t i = 0; i < m_TierBuffers.size(); i++) { m_TierBuffers[i].resize(bytesPerTier); - std::memcpy(m_TierBuffers[i].data(), dataIn + i * bytesPerTier, - bytesPerTier); + std::memcpy(m_TierBuffers[i].data(), dataIn + i * bytesPerTier, bytesPerTier); } } // for all tiers' sub-engines, copy data from m_TierBuffers to output buffer - std::memcpy(bufferOut + bufferOutOffset, - m_TierBuffers[m_CurrentTier].data(), + std::memcpy(bufferOut + bufferOutOffset, m_TierBuffers[m_CurrentTier].data(), m_TierBuffers[m_CurrentTier].size()); bufferOutOffset += bytesPerTier; @@ -87,18 +82,15 @@ size_t CompressSirius::Operate(const char *dataIn, const Dims &blockStart, return bufferOutOffset; } -size_t CompressSirius::InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressSirius::InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) { size_t bufferInOffset = 1; // skip operator type - const uint8_t bufferVersion = - GetParameter(bufferIn, bufferInOffset); + const uint8_t bufferVersion = GetParameter(bufferIn, bufferInOffset); bufferInOffset += 2; // skip two reserved bytes if (bufferVersion == 1) { - return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, - dataOut); + return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, dataOut); } else if (bufferVersion == 2) { @@ -107,8 +99,7 @@ size_t CompressSirius::InverseOperate(const char *bufferIn, const size_t sizeIn, } else { - helper::Throw("Operator", "CompressSirius", - "InverseOperate", + helper::Throw("Operator", "CompressSirius", "InverseOperate", "invalid sirius buffer version"); } @@ -124,8 +115,7 @@ bool CompressSirius::IsDataTypeValid(const DataType type) const return false; } -size_t CompressSirius::DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressSirius::DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut) { // Do NOT remove even if the buffer version is updated. Data might be still // in lagacy formats. This function must be kept for backward compatibility. @@ -146,11 +136,9 @@ size_t CompressSirius::DecompressV1(const char *bufferIn, const size_t sizeIn, } const DataType type = GetParameter(bufferIn, bufferInOffset); - const size_t outputBytes = - helper::GetTotalSize(blockCount, helper::GetDataTypeSize(type)); + const size_t outputBytes = helper::GetTotalSize(blockCount, helper::GetDataTypeSize(type)); - std::string blockId = - helper::DimsToString(blockStart) + helper::DimsToString(blockCount); + std::string blockId = helper::DimsToString(blockStart) + helper::DimsToString(blockCount); // decompress data and copy back to m_TierBuffers size_t bytesPerTier = outputBytes / m_Tiers; diff --git a/source/adios2/operator/compress/CompressSirius.h b/source/adios2/operator/compress/CompressSirius.h index 72d9667ef8..d686270a84 100644 --- a/source/adios2/operator/compress/CompressSirius.h +++ b/source/adios2/operator/compress/CompressSirius.h @@ -29,12 +29,10 @@ class CompressSirius : public Operator ~CompressSirius() = default; - size_t Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) final; + size_t Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) final; - size_t InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) final; + size_t InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) final; bool IsDataTypeValid(const DataType type) const final; @@ -48,8 +46,7 @@ class CompressSirius : public Operator static int m_CurrentTier; // for decompress - static std::vector>> - m_TierBuffersMap; + static std::vector>> m_TierBuffersMap; static std::unordered_map m_CurrentTierMap; /** @@ -61,8 +58,7 @@ class CompressSirius : public Operator * @param dataOut : decompressed data buffer * @return : number of bytes in dataOut */ - size_t DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut); + size_t DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut); }; } // end namespace compress diff --git a/source/adios2/operator/compress/CompressZFP.cpp b/source/adios2/operator/compress/CompressZFP.cpp index fdf2ab1981..3fd2c40f1a 100644 --- a/source/adios2/operator/compress/CompressZFP.cpp +++ b/source/adios2/operator/compress/CompressZFP.cpp @@ -45,17 +45,15 @@ zfp_field *GetZFPField(const char *data, const Dims &shape, DataType type); */ zfp_type GetZfpType(DataType type); -zfp_stream *GetZFPStream(const Dims &dimensions, DataType type, - const Params ¶meters); +zfp_stream *GetZFPStream(const Dims &dimensions, DataType type, const Params ¶meters); CompressZFP::CompressZFP(const Params ¶meters) : Operator("zfp", COMPRESS_ZFP, "compress", parameters) { } -size_t CompressZFP::Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) +size_t CompressZFP::Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) { const uint8_t bufferVersion = 1; size_t bufferOutOffset = 0; @@ -71,12 +69,9 @@ size_t CompressZFP::Operate(const char *dataIn, const Dims &blockStart, PutParameter(bufferOut, bufferOutOffset, d); } PutParameter(bufferOut, bufferOutOffset, type); - PutParameter(bufferOut, bufferOutOffset, - static_cast(ZFP_VERSION_MAJOR)); - PutParameter(bufferOut, bufferOutOffset, - static_cast(ZFP_VERSION_MINOR)); - PutParameter(bufferOut, bufferOutOffset, - static_cast(ZFP_VERSION_PATCH)); + PutParameter(bufferOut, bufferOutOffset, static_cast(ZFP_VERSION_MAJOR)); + PutParameter(bufferOut, bufferOutOffset, static_cast(ZFP_VERSION_MINOR)); + PutParameter(bufferOut, bufferOutOffset, static_cast(ZFP_VERSION_PATCH)); PutParameters(bufferOut, bufferOutOffset, m_Parameters); // zfp V1 metadata end @@ -95,9 +90,8 @@ size_t CompressZFP::Operate(const char *dataIn, const Dims &blockStart, if (sizeOut == 0) { - helper::Throw( - "Operator", "CompressZFP", "Operate(Compress)", - "zfp failed, compressed buffer size is 0"); + helper::Throw("Operator", "CompressZFP", "Operate(Compress)", + "zfp failed, compressed buffer size is 0"); } bufferOutOffset += sizeOut; @@ -109,18 +103,15 @@ size_t CompressZFP::Operate(const char *dataIn, const Dims &blockStart, return bufferOutOffset; } -size_t CompressZFP::InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressZFP::InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) { size_t bufferInOffset = 1; // skip operator type - const uint8_t bufferVersion = - GetParameter(bufferIn, bufferInOffset); + const uint8_t bufferVersion = GetParameter(bufferIn, bufferInOffset); bufferInOffset += 2; // skip two reserved bytes if (bufferVersion == 1) { - return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, - dataOut); + return DecompressV1(bufferIn + bufferInOffset, sizeIn - bufferInOffset, dataOut); } else if (bufferVersion == 2) { @@ -129,9 +120,9 @@ size_t CompressZFP::InverseOperate(const char *bufferIn, const size_t sizeIn, } else { - helper::Throw( - "Operator", "CompressZFP", "InverseOperate", - "invalid zfp buffer version" + std::to_string(bufferVersion)); + helper::Throw("Operator", "CompressZFP", "InverseOperate", + "invalid zfp buffer version" + + std::to_string(bufferVersion)); } return 0; @@ -139,9 +130,8 @@ size_t CompressZFP::InverseOperate(const char *bufferIn, const size_t sizeIn, bool CompressZFP::IsDataTypeValid(const DataType type) const { - if (type == DataType::Float || type == DataType::Double || - type == DataType::FloatComplex || type == DataType::DoubleComplex || - type == DataType::Int32 || type == DataType::Int64) + if (type == DataType::Float || type == DataType::Double || type == DataType::FloatComplex || + type == DataType::DoubleComplex || type == DataType::Int32 || type == DataType::Int64) { return true; } @@ -150,8 +140,7 @@ bool CompressZFP::IsDataTypeValid(const DataType type) const // PRIVATE -size_t CompressZFP::DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t CompressZFP::DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut) { // Do NOT remove even if the buffer version is updated. Data might be still // in lagacy formats. This function must be kept for backward compatibility. @@ -167,12 +156,11 @@ size_t CompressZFP::DecompressV1(const char *bufferIn, const size_t sizeIn, blockCount[i] = GetParameter(bufferIn, bufferInOffset); } const DataType type = GetParameter(bufferIn, bufferInOffset); - this->m_VersionInfo = - " Data is compressed using ZFP Version " + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + - std::to_string(GetParameter(bufferIn, bufferInOffset)) + - ". Please make sure a compatible version is used for decompression."; + this->m_VersionInfo = " Data is compressed using ZFP Version " + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + "." + + std::to_string(GetParameter(bufferIn, bufferInOffset)) + + ". Please make sure a compatible version is used for decompression."; const Params parameters = GetParameters(bufferIn, bufferInOffset); Dims convertedDims = ConvertDims(blockCount, type, 3); @@ -184,8 +172,8 @@ size_t CompressZFP::DecompressV1(const char *bufferIn, const size_t sizeIn, stream = GetZFPStream(convertedDims, type, parameters); // associate bitstream - bitstream *bitstream = stream_open( - const_cast(bufferIn + bufferInOffset), sizeIn - bufferInOffset); + bitstream *bitstream = + stream_open(const_cast(bufferIn + bufferInOffset), sizeIn - bufferInOffset); zfp_stream_set_bit_stream(stream, bitstream); zfp_stream_rewind(stream); @@ -193,9 +181,8 @@ size_t CompressZFP::DecompressV1(const char *bufferIn, const size_t sizeIn, if (!status) { - helper::Throw( - "Operator", "CompressZFP", "DecompressV1", - "zfp failed with status " + std::to_string(status)); + helper::Throw("Operator", "CompressZFP", "DecompressV1", + "zfp failed with status " + std::to_string(status)); } zfp_field_free(field); @@ -235,9 +222,8 @@ zfp_type GetZfpType(DataType type) } else { - helper::Throw( - "Operator", "CompressZFP", "GetZfpType", - "invalid data type " + ToString(type)); + helper::Throw("Operator", "CompressZFP", "GetZfpType", + "invalid data type " + ToString(type)); } return zfpType; @@ -256,35 +242,32 @@ zfp_field *GetZFPField(const char *data, const Dims &dimensions, DataType type) } else if (dimensions.size() == 2) { - field = zfp_field_2d(const_cast(data), zfpType, dimensions[0], - dimensions[1]); + field = zfp_field_2d(const_cast(data), zfpType, dimensions[0], dimensions[1]); } else if (dimensions.size() == 3) { - field = zfp_field_3d(const_cast(data), zfpType, dimensions[0], - dimensions[1], dimensions[2]); + field = zfp_field_3d(const_cast(data), zfpType, dimensions[0], dimensions[1], + dimensions[2]); } else { - helper::Throw( - "Operator", "CompressZFP", "GetZfpField", - "zfp does not support " + std::to_string(dimensions.size()) + - "D data"); + helper::Throw("Operator", "CompressZFP", "GetZfpField", + "zfp does not support " + + std::to_string(dimensions.size()) + "D data"); } if (field == nullptr) { - helper::Throw( - "Operator", "CompressZFP", "GetZfpField", - "zfp failed to make field for" + std::to_string(dimensions.size()) + - "D data in " + ToString(type)); + helper::Throw("Operator", "CompressZFP", "GetZfpField", + "zfp failed to make field for" + + std::to_string(dimensions.size()) + "D data in " + + ToString(type)); } return field; } -zfp_stream *GetZFPStream(const Dims &dimensions, DataType type, - const Params ¶meters) +zfp_stream *GetZFPStream(const Dims &dimensions, DataType type, const Params ¶meters) { zfp_stream *stream = zfp_stream_open(NULL); bool isSerial = true; @@ -343,8 +326,7 @@ zfp_stream *GetZFPStream(const Dims &dimensions, DataType type, zfp_stream_set_execution(stream, policy); } - if ((hasAccuracy && hasPrecision) || (hasAccuracy && hasRate) || - (hasPrecision && hasRate) || + if ((hasAccuracy && hasPrecision) || (hasAccuracy && hasRate) || (hasPrecision && hasRate) || (!hasAccuracy && !hasRate && !hasPrecision && !isSerial)) { std::ostringstream oss; @@ -356,8 +338,7 @@ zfp_stream *GetZFPStream(const Dims &dimensions, DataType type, { oss << "(" << p.first << ", " << p.second << ")."; } - helper::Throw("Operator", "CompressZFP", - "GetZfpField", oss.str()); + helper::Throw("Operator", "CompressZFP", "GetZfpField", oss.str()); } if (hasAccuracy) @@ -369,18 +350,16 @@ zfp_stream *GetZFPStream(const Dims &dimensions, DataType type, } else if (hasRate) { - const double rate = helper::StringTo( - itRate->second, "setting 'rate' in call to CompressZfp\n"); + const double rate = + helper::StringTo(itRate->second, "setting 'rate' in call to CompressZfp\n"); // TODO support last argument write random access? zfp_stream_set_rate(stream, rate, GetZfpType(type), static_cast(dimensions.size()), 0); } else if (hasPrecision) { - const unsigned int precision = - static_cast(helper::StringTo( - itPrecision->second, - "setting 'precision' in call to CompressZfp\n")); + const unsigned int precision = static_cast(helper::StringTo( + itPrecision->second, "setting 'precision' in call to CompressZfp\n")); zfp_stream_set_precision(stream, precision); } diff --git a/source/adios2/operator/compress/CompressZFP.h b/source/adios2/operator/compress/CompressZFP.h index 0a30160727..74925cbcc0 100644 --- a/source/adios2/operator/compress/CompressZFP.h +++ b/source/adios2/operator/compress/CompressZFP.h @@ -40,9 +40,8 @@ class CompressZFP : public Operator * @param bufferOut * @return size of compressed buffer */ - size_t Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) final; + size_t Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) final; /** * @param bufferIn @@ -50,8 +49,7 @@ class CompressZFP : public Operator * @param dataOut * @return size of decompressed buffer */ - size_t InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) final; + size_t InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) final; bool IsDataTypeValid(const DataType type) const final; @@ -65,8 +63,7 @@ class CompressZFP : public Operator * @param dataOut : decompressed data buffer * @return : number of bytes in dataOut */ - size_t DecompressV1(const char *bufferIn, const size_t sizeIn, - char *dataOut); + size_t DecompressV1(const char *bufferIn, const size_t sizeIn, char *dataOut); std::string m_VersionInfo; }; diff --git a/source/adios2/operator/plugin/PluginOperator.cpp b/source/adios2/operator/plugin/PluginOperator.cpp index ec5a0e1732..d66cb5b973 100644 --- a/source/adios2/operator/plugin/PluginOperator.cpp +++ b/source/adios2/operator/plugin/PluginOperator.cpp @@ -63,8 +63,7 @@ PluginOperator::PluginOperator(const Params ¶meters) PluginOperator::~PluginOperator() { m_Impl->m_HandleDestroy(m_Impl->m_Plugin); } -void PluginOperator::PluginInit(const std::string &pluginName, - const std::string &pluginLibrary) +void PluginOperator::PluginInit(const std::string &pluginName, const std::string &pluginLibrary) { if (m_Impl->m_Plugin) { @@ -80,9 +79,8 @@ void PluginOperator::PluginInit(const std::string &pluginName, m_Impl->m_Plugin = m_Impl->m_HandleCreate(m_Parameters); } -size_t PluginOperator::Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) +size_t PluginOperator::Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) { // handle common header first size_t offset = 0; @@ -95,13 +93,12 @@ size_t PluginOperator::Operate(const char *dataIn, const Dims &blockStart, // add offset to the bufferOut pointer, so that way the plugin doesn't // need to know anything about the plugin header. - size_t pluginSize = m_Impl->m_Plugin->Operate( - dataIn, blockStart, blockCount, type, bufferOut + offset); + size_t pluginSize = + m_Impl->m_Plugin->Operate(dataIn, blockStart, blockCount, type, bufferOut + offset); return offset + pluginSize; } -size_t PluginOperator::InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) +size_t PluginOperator::InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) { size_t offset = 4; // skip 4 bytes for the common header @@ -111,18 +108,16 @@ size_t PluginOperator::InverseOperate(const char *bufferIn, const size_t sizeIn, auto paramPluginNameIt = m_Impl->m_PluginParams.find("PluginName"); if (paramPluginNameIt == m_Impl->m_PluginParams.end()) { - helper::Throw( - "Plugins", "PluginOperator", "InverseOperate", - "PluginName could not be found in the plugin header"); + helper::Throw("Plugins", "PluginOperator", "InverseOperate", + "PluginName could not be found in the plugin header"); } std::string pluginName = paramPluginNameIt->second; auto paramPluginLibraryIt = m_Impl->m_PluginParams.find("PluginLibrary"); if (paramPluginLibraryIt == m_Impl->m_PluginParams.end()) { - helper::Throw( - "Plugins", "PluginOperator", "InverseOperate", - "PluginLibrary could not be found in the plugin header"); + helper::Throw("Plugins", "PluginOperator", "InverseOperate", + "PluginLibrary could not be found in the plugin header"); } const std::string &pluginLibrary = paramPluginLibraryIt->second; @@ -131,8 +126,8 @@ size_t PluginOperator::InverseOperate(const char *bufferIn, const size_t sizeIn, // add offset to bufferIn, so plugin doesn't have to worry about plugin // header or common header - size_t pluginSize = m_Impl->m_Plugin->InverseOperate( - bufferIn + offset, sizeIn - offset, dataOut); + size_t pluginSize = + m_Impl->m_Plugin->InverseOperate(bufferIn + offset, sizeIn - offset, dataOut); return pluginSize; } diff --git a/source/adios2/operator/plugin/PluginOperator.h b/source/adios2/operator/plugin/PluginOperator.h index 4bd24a338d..36e8f87bd8 100644 --- a/source/adios2/operator/plugin/PluginOperator.h +++ b/source/adios2/operator/plugin/PluginOperator.h @@ -37,18 +37,15 @@ class PluginOperator : public core::Operator PluginOperator(const Params ¶meters); virtual ~PluginOperator(); - size_t Operate(const char *dataIn, const Dims &blockStart, - const Dims &blockCount, const DataType type, - char *bufferOut) override; + size_t Operate(const char *dataIn, const Dims &blockStart, const Dims &blockCount, + const DataType type, char *bufferOut) override; - size_t InverseOperate(const char *bufferIn, const size_t sizeIn, - char *dataOut) override; + size_t InverseOperate(const char *bufferIn, const size_t sizeIn, char *dataOut) override; bool IsDataTypeValid(const DataType type) const override; protected: - void PluginInit(const std::string &pluginName, - const std::string &pluginLibrary); + void PluginInit(const std::string &pluginName, const std::string &pluginLibrary); private: struct Impl; diff --git a/source/adios2/toolkit/aggregator/mpi/MPIAggregator.cpp b/source/adios2/toolkit/aggregator/mpi/MPIAggregator.cpp index 7af472fc72..561a6fb748 100644 --- a/source/adios2/toolkit/aggregator/mpi/MPIAggregator.cpp +++ b/source/adios2/toolkit/aggregator/mpi/MPIAggregator.cpp @@ -39,8 +39,7 @@ void MPIAggregator::Close() } // PROTECTED -void MPIAggregator::InitComm(const size_t subStreams, - helper::Comm const &parentComm) +void MPIAggregator::InitComm(const size_t subStreams, helper::Comm const &parentComm) { int parentRank = parentComm.Rank(); int parentSize = parentComm.Size(); @@ -59,8 +58,7 @@ void MPIAggregator::InitComm(const size_t subStreams, if (process >= firstInSmallGroups) { m_SubStreamIndex = r + (process - firstInSmallGroups) / q; - m_AggregatorRank = - static_cast(firstInSmallGroups + (m_SubStreamIndex - r) * q); + m_AggregatorRank = static_cast(firstInSmallGroups + (m_SubStreamIndex - r) * q); } else { diff --git a/source/adios2/toolkit/aggregator/mpi/MPIChain.cpp b/source/adios2/toolkit/aggregator/mpi/MPIChain.cpp index 393c0e604f..8da8dadbd9 100644 --- a/source/adios2/toolkit/aggregator/mpi/MPIChain.cpp +++ b/source/adios2/toolkit/aggregator/mpi/MPIChain.cpp @@ -45,8 +45,7 @@ void MPIChain::Init(const size_t numAggregators, const size_t subStreams, void MPIChain::Close() { MPIAggregator::Close(); } -MPIChain::ExchangeRequests MPIChain::IExchange(format::Buffer &buffer, - const int step) +MPIChain::ExchangeRequests MPIChain::IExchange(format::Buffer &buffer, const int step) { if (m_Size == 1) { @@ -64,16 +63,14 @@ MPIChain::ExchangeRequests MPIChain::IExchange(format::Buffer &buffer, { requests.m_SendSize = m_Comm.Isend(&sendBuffer.m_Position, 1, m_Rank - 1, 0, - ", aggregation Isend size at iteration " + - std::to_string(step) + "\n"); + ", aggregation Isend size at iteration " + std::to_string(step) + "\n"); // only send data if buffer larger than 0 if (sendBuffer.m_Position > 0) { - requests.m_SendData = m_Comm.Isend( - sendBuffer.Data(), sendBuffer.m_Position, m_Rank - 1, 1, - ", aggregation Isend data at iteration " + - std::to_string(step)); + requests.m_SendData = + m_Comm.Isend(sendBuffer.Data(), sendBuffer.m_Position, m_Rank - 1, 1, + ", aggregation Isend data at iteration " + std::to_string(step)); } } // receive size, resize receiving buffer and receive data @@ -82,26 +79,22 @@ MPIChain::ExchangeRequests MPIChain::IExchange(format::Buffer &buffer, size_t bufferSize = 0; helper::Comm::Req receiveSizeRequest = m_Comm.Irecv(&bufferSize, 1, m_Rank + 1, 0, - ", aggregation Irecv size at iteration " + - std::to_string(step) + "\n"); + ", aggregation Irecv size at iteration " + std::to_string(step) + "\n"); - receiveSizeRequest.Wait( - ", aggregation waiting for receiver size at iteration " + - std::to_string(step) + "\n"); + receiveSizeRequest.Wait(", aggregation waiting for receiver size at iteration " + + std::to_string(step) + "\n"); format::Buffer &receiveBuffer = GetReceiver(buffer); - ResizeUpdateBuffer( - bufferSize, receiveBuffer, - "in aggregation, when resizing receiving buffer to size " + - std::to_string(bufferSize)); + ResizeUpdateBuffer(bufferSize, receiveBuffer, + "in aggregation, when resizing receiving buffer to size " + + std::to_string(bufferSize)); // only receive data if buffer is larger than 0 if (bufferSize > 0) { - requests.m_RecvData = m_Comm.Irecv( - receiveBuffer.Data(), receiveBuffer.m_Position, m_Rank + 1, 1, - ", aggregation Irecv data at iteration " + - std::to_string(step)); + requests.m_RecvData = + m_Comm.Irecv(receiveBuffer.Data(), receiveBuffer.m_Position, m_Rank + 1, 1, + ", aggregation Irecv data at iteration " + std::to_string(step)); } } @@ -118,9 +111,9 @@ MPIChain::IExchangeAbsolutePosition(format::Buffer &buffer, const int step) if (m_IsInExchangeAbsolutePosition) { - helper::Throw( - "Toolkit", "aggregator::mpi::MPIChain", "IExchangeAbsolutePosition", - "An existing exchange is still active"); + helper::Throw("Toolkit", "aggregator::mpi::MPIChain", + "IExchangeAbsolutePosition", + "An existing exchange is still active"); } const int destination = (step != m_Size - 1) ? step + 1 : 0; @@ -128,8 +121,7 @@ MPIChain::IExchangeAbsolutePosition(format::Buffer &buffer, const int step) if (step == 0) { - m_SizeSend = - (m_Rank == 0) ? buffer.m_AbsolutePosition : buffer.m_Position; + m_SizeSend = (m_Rank == 0) ? buffer.m_AbsolutePosition : buffer.m_Position; } if (m_Rank == step) @@ -137,17 +129,15 @@ MPIChain::IExchangeAbsolutePosition(format::Buffer &buffer, const int step) m_ExchangeAbsolutePosition = (m_Rank == 0) ? m_SizeSend : m_SizeSend + buffer.m_AbsolutePosition; - requests.m_Send = - m_Comm.Isend(&m_ExchangeAbsolutePosition, 1, destination, 0, - ", aggregation Isend absolute position at iteration " + - std::to_string(step) + "\n"); + requests.m_Send = m_Comm.Isend(&m_ExchangeAbsolutePosition, 1, destination, 0, + ", aggregation Isend absolute position at iteration " + + std::to_string(step) + "\n"); } else if (m_Rank == destination) { - requests.m_Recv = - m_Comm.Irecv(&buffer.m_AbsolutePosition, 1, step, 0, - ", aggregation Irecv absolute position at iteration " + - std::to_string(step) + "\n"); + requests.m_Recv = m_Comm.Irecv(&buffer.m_AbsolutePosition, 1, step, 0, + ", aggregation Irecv absolute position at iteration " + + std::to_string(step) + "\n"); } m_IsInExchangeAbsolutePosition = true; @@ -167,23 +157,20 @@ void MPIChain::Wait(ExchangeRequests &requests, const int step) if (receiver) { - requests.m_RecvData.Wait( - ", aggregation waiting for receiver request at iteration " + - std::to_string(step) + "\n"); + requests.m_RecvData.Wait(", aggregation waiting for receiver request at iteration " + + std::to_string(step) + "\n"); } if (sender) { const std::string hint = - ", aggregation waiting for sender request at iteration " + - std::to_string(step) + "\n"; + ", aggregation waiting for sender request at iteration " + std::to_string(step) + "\n"; requests.m_SendSize.Wait(hint); requests.m_SendData.Wait(hint); } } -void MPIChain::WaitAbsolutePosition(ExchangeAbsolutePositionRequests &requests, - const int step) +void MPIChain::WaitAbsolutePosition(ExchangeAbsolutePositionRequests &requests, const int step) { if (m_Size == 1) { @@ -192,25 +179,23 @@ void MPIChain::WaitAbsolutePosition(ExchangeAbsolutePositionRequests &requests, if (!m_IsInExchangeAbsolutePosition) { - helper::Throw( - "Toolkit", "aggregator::mpi::MPIChain", "WaitAbsolutePosition", - "An existing exchange is not active"); + helper::Throw("Toolkit", "aggregator::mpi::MPIChain", + "WaitAbsolutePosition", + "An existing exchange is not active"); } const int destination = (step != m_Size - 1) ? step + 1 : 0; if (m_Rank == destination) { - requests.m_Recv.Wait( - ", aggregation Irecv Wait absolute position at iteration " + - std::to_string(step) + "\n"); + requests.m_Recv.Wait(", aggregation Irecv Wait absolute position at iteration " + + std::to_string(step) + "\n"); } if (m_Rank == step) { - requests.m_Send.Wait( - ", aggregation Isend Wait absolute position at iteration " + - std::to_string(step) + "\n"); + requests.m_Send.Wait(", aggregation Isend Wait absolute position at iteration " + + std::to_string(step) + "\n"); } m_IsInExchangeAbsolutePosition = false; } @@ -222,10 +207,7 @@ void MPIChain::SwapBuffers(const int /*step*/) noexcept void MPIChain::ResetBuffers() noexcept { m_CurrentBufferOrder = 0; } -format::Buffer &MPIChain::GetConsumerBuffer(format::Buffer &buffer) -{ - return GetSender(buffer); -} +format::Buffer &MPIChain::GetConsumerBuffer(format::Buffer &buffer) { return GetSender(buffer); } // PRIVATE void MPIChain::HandshakeLinks() @@ -235,25 +217,21 @@ void MPIChain::HandshakeLinks() helper::Comm::Req sendRequest; if (m_Rank > 0) // send { - sendRequest = m_Comm.Isend( - &m_Rank, 1, m_Rank - 1, 0, - "Isend handshake with neighbor, MPIChain aggregator, at Open"); + sendRequest = m_Comm.Isend(&m_Rank, 1, m_Rank - 1, 0, + "Isend handshake with neighbor, MPIChain aggregator, at Open"); } if (m_Rank < m_Size - 1) // receive { helper::Comm::Req receiveRequest = m_Comm.Irecv( - &link, 1, m_Rank + 1, 0, - "Irecv handshake with neighbor, MPIChain aggregator, at Open"); + &link, 1, m_Rank + 1, 0, "Irecv handshake with neighbor, MPIChain aggregator, at Open"); - receiveRequest.Wait( - "Irecv Wait handshake with neighbor, MPIChain aggregator, at Open"); + receiveRequest.Wait("Irecv Wait handshake with neighbor, MPIChain aggregator, at Open"); } if (m_Rank > 0) { - sendRequest.Wait( - "Isend wait handshake with neighbor, MPIChain aggregator, at Open"); + sendRequest.Wait("Isend wait handshake with neighbor, MPIChain aggregator, at Open"); } } @@ -291,9 +269,8 @@ void MPIChain::ResizeUpdateBuffer(const size_t newSize, format::Buffer &buffer, helper::Throw( "Toolkit", "aggregator::mpi::MPIChain", "ResizeUpdateBuffer", "requesting new size: " + std::to_string(newSize) + - " bytes, for fixed size buffer " + - std::to_string(buffer.m_FixedSize) + " of type " + - buffer.m_Type + ", allocate more memory"); + " bytes, for fixed size buffer " + std::to_string(buffer.m_FixedSize) + + " of type " + buffer.m_Type + ", allocate more memory"); } return; // do nothing if fixed size is enough } diff --git a/source/adios2/toolkit/aggregator/mpi/MPIChain.h b/source/adios2/toolkit/aggregator/mpi/MPIChain.h index 9a8570c243..a13d29c322 100644 --- a/source/adios2/toolkit/aggregator/mpi/MPIChain.h +++ b/source/adios2/toolkit/aggregator/mpi/MPIChain.h @@ -47,11 +47,10 @@ class MPIChain : public MPIAggregator helper::Comm::Req m_Recv; }; - ExchangeAbsolutePositionRequests - IExchangeAbsolutePosition(format::Buffer &buffer, const int step); + ExchangeAbsolutePositionRequests IExchangeAbsolutePosition(format::Buffer &buffer, + const int step); - void WaitAbsolutePosition(ExchangeAbsolutePositionRequests &requests, - const int step); + void WaitAbsolutePosition(ExchangeAbsolutePositionRequests &requests, const int step); void Wait(ExchangeRequests &requests, const int step); @@ -97,8 +96,7 @@ class MPIChain : public MPIAggregator * @param buffer to be resized * @param hint used in exception error message */ - void ResizeUpdateBuffer(const size_t newSize, format::Buffer &buffer, - const std::string hint); + void ResizeUpdateBuffer(const size_t newSize, format::Buffer &buffer, const std::string hint); }; } // end namespace aggregator diff --git a/source/adios2/toolkit/aggregator/mpi/MPIShmChain.cpp b/source/adios2/toolkit/aggregator/mpi/MPIShmChain.cpp index da337ae434..63cb331be0 100644 --- a/source/adios2/toolkit/aggregator/mpi/MPIShmChain.cpp +++ b/source/adios2/toolkit/aggregator/mpi/MPIShmChain.cpp @@ -28,10 +28,8 @@ void MPIShmChain::Close() { m_NodeComm.Free("free per-node comm in ~MPIShmChain()"); m_OnePerNodeComm.Free("free chain of nodes in ~MPIShmChain()"); - m_AllAggregatorsComm.Free( - "free comm of all aggregators in ~MPIShmChain()"); - m_AggregatorChainComm.Free( - "free chains of aggregators in ~MPIShmChain()"); + m_AllAggregatorsComm.Free("free comm of all aggregators in ~MPIShmChain()"); + m_AggregatorChainComm.Free("free chains of aggregators in ~MPIShmChain()"); } MPIAggregator::Close(); } @@ -47,8 +45,7 @@ size_t MPIShmChain::PreInit(helper::Comm const &parentComm) * We are only interested in the chain of rank 0s */ int color = (NodeRank ? 1 : 0); - m_OnePerNodeComm = - parentComm.Split(color, 0, "creating chain of nodes at Open"); + m_OnePerNodeComm = parentComm.Split(color, 0, "creating chain of nodes at Open"); /* Number of nodes */ if (!NodeRank) @@ -86,8 +83,7 @@ void MPIShmChain::Init(const size_t numAggregators, const size_t subStreams, /* Create main communicator that splits the node comm into one or more * aggregator chains */ - float k = - static_cast(NodeSize) / static_cast(aggregatorPerNode); + float k = static_cast(NodeSize) / static_cast(aggregatorPerNode); float c = static_cast(NodeRank) / k; int color = static_cast(c); m_Comm = m_NodeComm.Split(color, 0, "creating aggregator groups at Open"); @@ -108,8 +104,7 @@ void MPIShmChain::Init(const size_t numAggregators, const size_t subStreams, /* Communicator for all Aggregators */ color = (m_Rank ? 1 : 0); - m_AllAggregatorsComm = - parentComm.Split(color, 0, "creating comm of all aggregators at Open"); + m_AllAggregatorsComm = parentComm.Split(color, 0, "creating comm of all aggregators at Open"); /* Total number of aggregators */ if (!NodeRank) @@ -131,8 +126,7 @@ void MPIShmChain::Init(const size_t numAggregators, const size_t subStreams, if (!m_Rank) { - k = static_cast(m_NumAggregators) / - static_cast(m_SubStreams); + k = static_cast(m_NumAggregators) / static_cast(m_SubStreams); /* 1.0 <= k <= m_NumAggregators */ c = static_cast(m_AllAggregatorsComm.Rank()) / k; m_SubStreamIndex = static_cast(c); @@ -142,8 +136,8 @@ void MPIShmChain::Init(const size_t numAggregators, const size_t subStreams, /* Create the communicator to connect aggregators writing to the same * substream */ color = static_cast(m_SubStreamIndex); - m_AggregatorChainComm = m_AllAggregatorsComm.Split( - color, 0, "creating chains of aggregators at Open"); + m_AggregatorChainComm = + m_AllAggregatorsComm.Split(color, 0, "creating chains of aggregators at Open"); if (m_AggregatorChainComm.Rank() != 0) { @@ -181,28 +175,24 @@ void MPIShmChain::HandshakeLinks_Start(helper::Comm &comm, HandshakeStruct &hs) hs.sendToken = rank; if (rank < comm.Size() - 1) // send to next { - hs.sendRequest = comm.Isend( - &hs.sendToken, 1, rank + 1, 0, - "Isend handshake with neighbor, MPIChain aggregator, at Open"); + hs.sendRequest = comm.Isend(&hs.sendToken, 1, rank + 1, 0, + "Isend handshake with neighbor, MPIChain aggregator, at Open"); } else // send to 0 to close the loop { - hs.sendRequest = comm.Isend( - &hs.sendToken, 1, 0, 0, - "Isend handshake with rank 0, MPIChain aggregator, at Open"); + hs.sendRequest = comm.Isend(&hs.sendToken, 1, 0, 0, + "Isend handshake with rank 0, MPIChain aggregator, at Open"); } if (comm.Rank() > 0) // receive from previous { - hs.recvRequest = comm.Irecv( - &hs.recvToken, 1, rank - 1, 0, - "Irecv handshake with neighbor, MPIChain aggregator, at Open"); + hs.recvRequest = comm.Irecv(&hs.recvToken, 1, rank - 1, 0, + "Irecv handshake with neighbor, MPIChain aggregator, at Open"); } else // rank 0 receives from last { - hs.recvRequest = comm.Irecv( - &hs.recvToken, 1, comm.Size() - 1, 0, - "Irecv handshake with neighbor, MPIChain aggregator, at Open"); + hs.recvRequest = comm.Irecv(&hs.recvToken, 1, comm.Size() - 1, 0, + "Irecv handshake with neighbor, MPIChain aggregator, at Open"); } } @@ -219,9 +209,8 @@ void MPIShmChain::CreateShm(size_t blocksize, const size_t maxsegmentsize, { if (!m_Comm.IsMPI()) { - helper::Throw( - "Toolkit", "aggregator::mpi::MPIShmChain", "CreateShm", - "called with a non-MPI communicator"); + helper::Throw("Toolkit", "aggregator::mpi::MPIShmChain", "CreateShm", + "called with a non-MPI communicator"); } char *ptr; size_t structsize = sizeof(ShmSegment); @@ -234,11 +223,9 @@ void MPIShmChain::CreateShm(size_t blocksize, const size_t maxsegmentsize, { // roll back and calculate sizes from maxsegmentsize totalsize = maxsegmentsize - alignment_size + 1; - totalsize += - helper::PaddingToAlignOffset(totalsize, alignment_size); + totalsize += helper::PaddingToAlignOffset(totalsize, alignment_size); blocksize = (totalsize - structsize) / 2 - alignment_size + 1; - blocksize += - helper::PaddingToAlignOffset(blocksize, alignment_size); + blocksize += helper::PaddingToAlignOffset(blocksize, alignment_size); totalsize = structsize + 2 * blocksize; } m_Win = m_Comm.Win_allocate_shared(totalsize, 1, &ptr); diff --git a/source/adios2/toolkit/aggregator/mpi/MPIShmChain.h b/source/adios2/toolkit/aggregator/mpi/MPIShmChain.h index fafd846133..f2b6df6530 100644 --- a/source/adios2/toolkit/aggregator/mpi/MPIShmChain.h +++ b/source/adios2/toolkit/aggregator/mpi/MPIShmChain.h @@ -110,8 +110,7 @@ class MPIShmChain : public MPIAggregator void ResetBuffers() noexcept; // 2*blocksize+some is allocated but only up to maxsegmentsize - void CreateShm(size_t blocksize, const size_t maxsegmentsize, - const size_t alignment_size); + void CreateShm(size_t blocksize, const size_t maxsegmentsize, const size_t alignment_size); void DestroyShm(); private: diff --git a/source/adios2/toolkit/burstbuffer/FileDrainer.cpp b/source/adios2/toolkit/burstbuffer/FileDrainer.cpp index 4e2a9be38d..1bb28d7e58 100644 --- a/source/adios2/toolkit/burstbuffer/FileDrainer.cpp +++ b/source/adios2/toolkit/burstbuffer/FileDrainer.cpp @@ -25,13 +25,11 @@ namespace adios2 namespace burstbuffer { -FileDrainOperation::FileDrainOperation(DrainOperation op, - const std::string &fromFileName, - const std::string &toFileName, - size_t countBytes, size_t fromOffset, - size_t toOffset, const void *data) -: op(op), fromFileName(fromFileName), toFileName(toFileName), - countBytes(countBytes), fromOffset(fromOffset), toOffset(toOffset) +FileDrainOperation::FileDrainOperation(DrainOperation op, const std::string &fromFileName, + const std::string &toFileName, size_t countBytes, + size_t fromOffset, size_t toOffset, const void *data) +: op(op), fromFileName(fromFileName), toFileName(toFileName), countBytes(countBytes), + fromOffset(fromOffset), toOffset(toOffset) { if (data) { @@ -46,14 +44,12 @@ void FileDrainer::AddOperation(FileDrainOperation &operation) operations.push(operation); } -void FileDrainer::AddOperation(DrainOperation op, - const std::string &fromFileName, - const std::string &toFileName, size_t fromOffset, - size_t toOffset, size_t countBytes, - const void *data) +void FileDrainer::AddOperation(DrainOperation op, const std::string &fromFileName, + const std::string &toFileName, size_t fromOffset, size_t toOffset, + size_t countBytes, const void *data) { - FileDrainOperation operation(op, fromFileName, toFileName, countBytes, - fromOffset, toOffset, data); + FileDrainOperation operation(op, fromFileName, toFileName, countBytes, fromOffset, toOffset, + data); std::lock_guard lockGuard(operationsMutex); operations.push(operation); } @@ -63,37 +59,30 @@ void FileDrainer::AddOperationSeekEnd(const std::string &toFileName) std::string emptyStr; AddOperation(DrainOperation::SeekEnd, emptyStr, toFileName, 0, 0, 0); } -void FileDrainer::AddOperationCopyAt(const std::string &fromFileName, - const std::string &toFileName, - size_t fromOffset, size_t toOffset, - size_t countBytes) +void FileDrainer::AddOperationCopyAt(const std::string &fromFileName, const std::string &toFileName, + size_t fromOffset, size_t toOffset, size_t countBytes) { - AddOperation(DrainOperation::CopyAt, fromFileName, toFileName, fromOffset, - toOffset, countBytes); + AddOperation(DrainOperation::CopyAt, fromFileName, toFileName, fromOffset, toOffset, + countBytes); } -void FileDrainer::AddOperationCopy(const std::string &fromFileName, - const std::string &toFileName, +void FileDrainer::AddOperationCopy(const std::string &fromFileName, const std::string &toFileName, size_t countBytes) { - AddOperation(DrainOperation::Copy, fromFileName, toFileName, 0, 0, - countBytes); + AddOperation(DrainOperation::Copy, fromFileName, toFileName, 0, 0, countBytes); } -void FileDrainer::AddOperationWriteAt(const std::string &toFileName, - size_t toOffset, size_t countBytes, - const void *data) +void FileDrainer::AddOperationWriteAt(const std::string &toFileName, size_t toOffset, + size_t countBytes, const void *data) { std::string emptyStr; - AddOperation(DrainOperation::WriteAt, emptyStr, toFileName, 0, toOffset, - countBytes, data); + AddOperation(DrainOperation::WriteAt, emptyStr, toFileName, 0, toOffset, countBytes, data); } -void FileDrainer::AddOperationWrite(const std::string &toFileName, - size_t countBytes, const void *data) +void FileDrainer::AddOperationWrite(const std::string &toFileName, size_t countBytes, + const void *data) { std::string emptyStr; - AddOperation(DrainOperation::Write, emptyStr, toFileName, 0, 0, countBytes, - data); + AddOperation(DrainOperation::Write, emptyStr, toFileName, 0, 0, countBytes, data); } void FileDrainer::AddOperationOpen(const std::string &toFileName, Mode mode) @@ -109,9 +98,8 @@ void FileDrainer::AddOperationOpen(const std::string &toFileName, Mode mode) } else { - helper::Throw( - "Toolkit", "BurstBuffer::FileDrainer", "AddOperationOpen", - "only supports Write and Append modes"); + helper::Throw("Toolkit", "BurstBuffer::FileDrainer", "AddOperationOpen", + "only supports Write and Append modes"); } } @@ -222,8 +210,7 @@ size_t FileDrainer::GetFileSize(InputFile &f) return static_cast(fileSize); } -std::pair FileDrainer::Read(InputFile &f, size_t count, - char *buffer, +std::pair FileDrainer::Read(InputFile &f, size_t count, char *buffer, const std::string &path) { size_t totalRead = 0; @@ -248,11 +235,9 @@ std::pair FileDrainer::Read(InputFile &f, size_t count, { helper::Throw( "Toolkit", "BurstBuffer::FileDrainer", "Read", - "FileDrainer couldn't read from file " + path + - " offset = " + std::to_string(currentOffset) + - " count = " + std::to_string(count) + - " bytes but only " + - std::to_string(totalRead + readSize)); + "FileDrainer couldn't read from file " + path + " offset = " + + std::to_string(currentOffset) + " count = " + std::to_string(count) + + " bytes but only " + std::to_string(totalRead + readSize)); } } buffer += readSize; @@ -262,17 +247,15 @@ std::pair FileDrainer::Read(InputFile &f, size_t count, return std::pair(totalRead, totalSlept); } -size_t FileDrainer::Write(OutputFile &f, size_t count, const char *buffer, - const std::string &path) +size_t FileDrainer::Write(OutputFile &f, size_t count, const char *buffer, const std::string &path) { f->write(buffer, static_cast(count)); if (f->bad()) { - helper::Throw( - "Toolkit", "BurstBuffer::FileDrainer", "Write", - "FileDrainer couldn't write to file " + path + - " count = " + std::to_string(count) + " bytes"); + helper::Throw("Toolkit", "BurstBuffer::FileDrainer", "Write", + "FileDrainer couldn't write to file " + path + + " count = " + std::to_string(count) + " bytes"); } return count; diff --git a/source/adios2/toolkit/burstbuffer/FileDrainer.h b/source/adios2/toolkit/burstbuffer/FileDrainer.h index db0da66276..9e2f9854d7 100644 --- a/source/adios2/toolkit/burstbuffer/FileDrainer.h +++ b/source/adios2/toolkit/burstbuffer/FileDrainer.h @@ -40,7 +40,7 @@ enum class DrainOperation Write, // Write data from memory to toFileName directly (without seek) Create, // Open file for writing (creat) - only toFile Open, // Open file for append - only toFile - Delete // Remove a file on disk (file will be opened if not already opened) + Delete // Remove a file on disk (file will be opened if not already opened) }; struct FileDrainOperation @@ -54,8 +54,8 @@ struct FileDrainOperation std::vector dataToWrite; // memory to write with Write operation FileDrainOperation(DrainOperation op, const std::string &fromFileName, - const std::string &toFileName, size_t countBytes, - size_t fromOffset, size_t toOffset, const void *data); + const std::string &toFileName, size_t countBytes, size_t fromOffset, + size_t toOffset, const void *data); }; typedef std::map> InputFileMap; @@ -72,20 +72,17 @@ class FileDrainer void AddOperation(FileDrainOperation &operation); void AddOperation(DrainOperation op, const std::string &fromFileName, - const std::string &toFileName, size_t fromOffset, - size_t toOffset, size_t countBytes, - const void *data = nullptr); + const std::string &toFileName, size_t fromOffset, size_t toOffset, + size_t countBytes, const void *data = nullptr); void AddOperationSeekEnd(const std::string &toFileName); - void AddOperationCopyAt(const std::string &fromFileName, - const std::string &toFileName, size_t fromOffset, - size_t toOffset, size_t countBytes); - void AddOperationCopy(const std::string &fromFileName, - const std::string &toFileName, size_t countBytes); - void AddOperationWriteAt(const std::string &toFileName, size_t toOffset, - size_t countBytes, const void *data); - void AddOperationWrite(const std::string &toFileName, size_t countBytes, - const void *data); + void AddOperationCopyAt(const std::string &fromFileName, const std::string &toFileName, + size_t fromOffset, size_t toOffset, size_t countBytes); + void AddOperationCopy(const std::string &fromFileName, const std::string &toFileName, + size_t countBytes); + void AddOperationWriteAt(const std::string &toFileName, size_t toOffset, size_t countBytes, + const void *data); + void AddOperationWrite(const std::string &toFileName, size_t countBytes, const void *data); void AddOperationOpen(const std::string &toFileName, Mode mode); void AddOperationDelete(const std::string &toFileName); @@ -133,8 +130,7 @@ class FileDrainer */ std::pair Read(InputFile &f, size_t count, char *buffer, const std::string &path); - size_t Write(OutputFile &f, size_t count, const char *buffer, - const std::string &path); + size_t Write(OutputFile &f, size_t count, const char *buffer, const std::string &path); void Delete(OutputFile &f, const std::string &path); diff --git a/source/adios2/toolkit/burstbuffer/FileDrainerSingleThread.cpp b/source/adios2/toolkit/burstbuffer/FileDrainerSingleThread.cpp index 8c95f90229..b25de44557 100644 --- a/source/adios2/toolkit/burstbuffer/FileDrainerSingleThread.cpp +++ b/source/adios2/toolkit/burstbuffer/FileDrainerSingleThread.cpp @@ -71,8 +71,7 @@ void FileDrainerSingleThread::Join() if (m_Verbose) { #ifndef NO_SANITIZE_THREAD - std::cout << "Drain " << m_Rank - << ": Waited for thread to join = " << timeTotal.count() + std::cout << "Drain " << m_Rank << ": Waited for thread to join = " << timeTotal.count() << " seconds" << std::endl; #endif } @@ -103,12 +102,10 @@ void FileDrainerSingleThread::DrainThread() double sleptForWaitingOnRead = 0.0; /* Copy a block of data from one file to another at the same offset */ - auto lf_Copy = [&](FileDrainOperation &fdo, InputFile fdr, OutputFile fdw, - size_t count) { + auto lf_Copy = [&](FileDrainOperation &fdo, InputFile fdr, OutputFile fdw, size_t count) { nReadBytesTasked += count; ts = core::Now(); - std::pair ret = - Read(fdr, count, buffer.data(), fdo.fromFileName); + std::pair ret = Read(fdr, count, buffer.data(), fdo.fromFileName); te = core::Now(); timeRead += te - ts; nReadBytesSucc += ret.first; @@ -171,13 +168,11 @@ void FileDrainerSingleThread::DrainThread() if (m_Verbose >= 2) { #ifndef NO_SANITIZE_THREAD - std::cout << "Drain " << m_Rank << ": Copy from " - << fdo.fromFileName << " -> " << fdo.toFileName << " " - << fdo.countBytes << " bytes "; + std::cout << "Drain " << m_Rank << ": Copy from " << fdo.fromFileName << " -> " + << fdo.toFileName << " " << fdo.countBytes << " bytes "; if (fdo.op == DrainOperation::CopyAt) { - std::cout << ", offsets: from " << fdo.fromOffset << " to " - << fdo.toOffset; + std::cout << ", offsets: from " << fdo.fromOffset << " to " << fdo.toOffset; } if (!Good(fdr) || !Good(fdw)) { @@ -216,9 +211,8 @@ void FileDrainerSingleThread::DrainThread() } catch (std::ios_base::failure &e) { - helper::Log("BurstBuffer", "FileDrainerSingleThread", - "DrainThread", std::string(e.what()), - helper::FATALERROR); + helper::Log("BurstBuffer", "FileDrainerSingleThread", "DrainThread", + std::string(e.what()), helper::FATALERROR); } } break; @@ -227,8 +221,8 @@ void FileDrainerSingleThread::DrainThread() if (m_Verbose >= 2) { #ifndef NO_SANITIZE_THREAD - std::cout << "Drain " << m_Rank << ": Seek to End of file " - << fdo.toFileName << std::endl; + std::cout << "Drain " << m_Rank << ": Seek to End of file " << fdo.toFileName + << std::endl; #endif } ts = core::Now(); @@ -242,9 +236,8 @@ void FileDrainerSingleThread::DrainThread() if (m_Verbose >= 2) { #ifndef NO_SANITIZE_THREAD - std::cout << "Drain " << m_Rank << ": Write to file " - << fdo.toFileName << " " << fdo.countBytes - << " bytes of data from memory to offset " + std::cout << "Drain " << m_Rank << ": Write to file " << fdo.toFileName << " " + << fdo.countBytes << " bytes of data from memory to offset " << fdo.toOffset << std::endl; #endif } @@ -252,8 +245,7 @@ void FileDrainerSingleThread::DrainThread() ts = core::Now(); auto fdw = GetFileForWrite(fdo.toFileName); Seek(fdw, fdo.toOffset, fdo.toFileName); - size_t n = Write(fdw, fdo.countBytes, fdo.dataToWrite.data(), - fdo.toFileName); + size_t n = Write(fdw, fdo.countBytes, fdo.dataToWrite.data(), fdo.toFileName); te = core::Now(); timeWrite += te - ts; nWriteBytesSucc += n; @@ -263,17 +255,14 @@ void FileDrainerSingleThread::DrainThread() if (m_Verbose >= 2) { #ifndef NO_SANITIZE_THREAD - std::cout << "Drain " << m_Rank << ": Write to file " - << fdo.toFileName << " " << fdo.countBytes - << " bytes of data from memory (no seek)" - << std::endl; + std::cout << "Drain " << m_Rank << ": Write to file " << fdo.toFileName << " " + << fdo.countBytes << " bytes of data from memory (no seek)" << std::endl; #endif } nWriteBytesTasked += fdo.countBytes; ts = core::Now(); auto fdw = GetFileForWrite(fdo.toFileName); - size_t n = Write(fdw, fdo.countBytes, fdo.dataToWrite.data(), - fdo.toFileName); + size_t n = Write(fdw, fdo.countBytes, fdo.dataToWrite.data(), fdo.toFileName); te = core::Now(); timeWrite += te - ts; nWriteBytesSucc += n; @@ -283,8 +272,8 @@ void FileDrainerSingleThread::DrainThread() if (m_Verbose >= 2) { #ifndef NO_SANITIZE_THREAD - std::cout << "Drain " << m_Rank << ": Create new file " - << fdo.toFileName << std::endl; + std::cout << "Drain " << m_Rank << ": Create new file " << fdo.toFileName + << std::endl; #endif } ts = core::Now(); @@ -297,8 +286,8 @@ void FileDrainerSingleThread::DrainThread() if (m_Verbose >= 2) { #ifndef NO_SANITIZE_THREAD - std::cout << "Drain " << m_Rank << ": Open file " - << fdo.toFileName << " for append " << std::endl; + std::cout << "Drain " << m_Rank << ": Open file " << fdo.toFileName + << " for append " << std::endl; #endif } ts = core::Now(); @@ -311,8 +300,7 @@ void FileDrainerSingleThread::DrainThread() if (m_Verbose >= 2) { #ifndef NO_SANITIZE_THREAD - std::cout << "Drain " << m_Rank << ": Delete file " - << fdo.toFileName << std::endl; + std::cout << "Drain " << m_Rank << ": Delete file " << fdo.toFileName << std::endl; #endif } ts = core::Now(); @@ -334,8 +322,7 @@ void FileDrainerSingleThread::DrainThread() if (m_Verbose > 1) { #ifndef NO_SANITIZE_THREAD - std::cout << "Drain " << m_Rank - << " finished operations. Closing all files" << std::endl; + std::cout << "Drain " << m_Rank << " finished operations. Closing all files" << std::endl; #endif } @@ -348,17 +335,14 @@ void FileDrainerSingleThread::DrainThread() timeTotal = tTotalEnd - tTotalStart; const bool shouldReport = (m_Verbose || (nReadBytesTasked != nReadBytesSucc) || - (nWriteBytesTasked != nWriteBytesSucc) || - (sleptForWaitingOnRead > 0.0)); + (nWriteBytesTasked != nWriteBytesSucc) || (sleptForWaitingOnRead > 0.0)); if (shouldReport) { #ifndef NO_SANITIZE_THREAD - std::cout << "Drain " << m_Rank - << ": Runtime total = " << timeTotal.count() - << " read = " << timeRead.count() - << " write = " << timeWrite.count() - << " close = " << timeClose.count() - << " sleep = " << timeSleep.count() << " seconds" + std::cout << "Drain " << m_Rank << ": Runtime total = " << timeTotal.count() + << " read = " << timeRead.count() << " write = " << timeWrite.count() + << " close = " << timeClose.count() << " sleep = " << timeSleep.count() + << " seconds" << ". Max queue size = " << maxQueueSize << "."; if (nReadBytesTasked == nReadBytesSucc) { @@ -367,8 +351,7 @@ void FileDrainerSingleThread::DrainThread() else { std::cout << " WARNING Read wanted = " << nReadBytesTasked - << " but successfully read = " << nReadBytesSucc - << " bytes."; + << " but successfully read = " << nReadBytesSucc << " bytes."; } if (nWriteBytesTasked == nWriteBytesSucc) { @@ -377,8 +360,7 @@ void FileDrainerSingleThread::DrainThread() else { std::cout << " WARNING Write wanted = " << nWriteBytesTasked - << " but successfully wrote = " << nWriteBytesSucc - << " bytes."; + << " but successfully wrote = " << nWriteBytesSucc << " bytes."; } if (sleptForWaitingOnRead > 0.0) { diff --git a/source/adios2/toolkit/dataspaces/ds_writer.c b/source/adios2/toolkit/dataspaces/ds_writer.c index be891fbb33..3318f776bb 100644 --- a/source/adios2/toolkit/dataspaces/ds_writer.c +++ b/source/adios2/toolkit/dataspaces/ds_writer.c @@ -59,22 +59,18 @@ enum DATASPACES_CONNECTION dataspaces_connected_from_writer = 2, dataspaces_connected_from_both = 3 }; -static enum DATASPACES_CONNECTION globals_adios_connected_to_dataspaces = - dataspaces_disconnected; +static enum DATASPACES_CONNECTION globals_adios_connected_to_dataspaces = dataspaces_disconnected; void globals_adios_set_dataspaces_connected_from_reader() { if (globals_adios_connected_to_dataspaces == dataspaces_disconnected) - globals_adios_connected_to_dataspaces = - dataspaces_connected_from_reader; - else if (globals_adios_connected_to_dataspaces == - dataspaces_connected_from_writer) + globals_adios_connected_to_dataspaces = dataspaces_connected_from_reader; + else if (globals_adios_connected_to_dataspaces == dataspaces_connected_from_writer) globals_adios_connected_to_dataspaces = dataspaces_connected_from_both; } void globals_adios_set_dataspaces_disconnected_from_reader() { - if (globals_adios_connected_to_dataspaces == - dataspaces_connected_from_reader) + if (globals_adios_connected_to_dataspaces == dataspaces_connected_from_reader) { globals_adios_connected_to_dataspaces = dataspaces_disconnected; #ifdef HAVE_DSPACES2 @@ -84,24 +80,19 @@ void globals_adios_set_dataspaces_disconnected_from_reader() } #endif } - else if (globals_adios_connected_to_dataspaces == - dataspaces_connected_from_both) - globals_adios_connected_to_dataspaces = - dataspaces_connected_from_writer; + else if (globals_adios_connected_to_dataspaces == dataspaces_connected_from_both) + globals_adios_connected_to_dataspaces = dataspaces_connected_from_writer; } void globals_adios_set_dataspaces_connected_from_writer() { if (globals_adios_connected_to_dataspaces == dataspaces_disconnected) - globals_adios_connected_to_dataspaces = - dataspaces_connected_from_writer; - else if (globals_adios_connected_to_dataspaces == - dataspaces_connected_from_reader) + globals_adios_connected_to_dataspaces = dataspaces_connected_from_writer; + else if (globals_adios_connected_to_dataspaces == dataspaces_connected_from_reader) globals_adios_connected_to_dataspaces = dataspaces_connected_from_both; } void globals_adios_set_dataspaces_disconnected_from_writer() { - if (globals_adios_connected_to_dataspaces == - dataspaces_connected_from_writer) + if (globals_adios_connected_to_dataspaces == dataspaces_connected_from_writer) { globals_adios_connected_to_dataspaces = dataspaces_disconnected; #ifdef HAVE_DSPACES2 @@ -111,10 +102,8 @@ void globals_adios_set_dataspaces_disconnected_from_writer() } #endif } - else if (globals_adios_connected_to_dataspaces == - dataspaces_connected_from_both) - globals_adios_connected_to_dataspaces = - dataspaces_connected_from_reader; + else if (globals_adios_connected_to_dataspaces == dataspaces_connected_from_both) + globals_adios_connected_to_dataspaces = dataspaces_connected_from_reader; } int globals_adios_is_dataspaces_connected() { @@ -122,22 +111,17 @@ int globals_adios_is_dataspaces_connected() } int globals_adios_is_dataspaces_connected_from_reader() { - return (globals_adios_connected_to_dataspaces == - dataspaces_connected_from_reader || - globals_adios_connected_to_dataspaces == - dataspaces_connected_from_both); + return (globals_adios_connected_to_dataspaces == dataspaces_connected_from_reader || + globals_adios_connected_to_dataspaces == dataspaces_connected_from_both); } int globals_adios_is_dataspaces_connected_from_writer() { - return (globals_adios_connected_to_dataspaces == - dataspaces_connected_from_writer || - globals_adios_connected_to_dataspaces == - dataspaces_connected_from_both); + return (globals_adios_connected_to_dataspaces == dataspaces_connected_from_writer || + globals_adios_connected_to_dataspaces == dataspaces_connected_from_both); } int globals_adios_is_dataspaces_connected_from_both() { - return (globals_adios_connected_to_dataspaces == - dataspaces_connected_from_both); + return (globals_adios_connected_to_dataspaces == dataspaces_connected_from_both); } int adios_dataspaces_init(void *comm, DsData *md) diff --git a/source/adios2/toolkit/format/bp/BPBase.cpp b/source/adios2/toolkit/format/bp/BPBase.cpp index 86ae5e3ba2..5cb3eca75c 100644 --- a/source/adios2/toolkit/format/bp/BPBase.cpp +++ b/source/adios2/toolkit/format/bp/BPBase.cpp @@ -21,8 +21,7 @@ namespace format { // PUBLIC -BPBase::SerialElementIndex::SerialElementIndex(const uint32_t memberID, - const size_t bufferSize) +BPBase::SerialElementIndex::SerialElementIndex(const uint32_t memberID, const size_t bufferSize) : MemberID(memberID) { Buffer.reserve(bufferSize); @@ -37,8 +36,7 @@ BPBase::BPBase(helper::Comm const &comm) : m_Comm(comm) m_Profiler.m_IsActive = true; // default } -void BPBase::Init(const Params ¶meters, const std::string hint, - const std::string engineType) +void BPBase::Init(const Params ¶meters, const std::string hint, const std::string engineType) { // Parse Parameters struct Parameters parsedParameters; @@ -52,42 +50,37 @@ void BPBase::Init(const Params ¶meters, const std::string hint, if (key == "profile") { profilePresent = true; - profileValue = helper::StringTo( - value, " in Parameter key=Profile " + hint); + profileValue = helper::StringTo(value, " in Parameter key=Profile " + hint); } else if (key == "profileunits") { - parsedParameters.ProfileUnit = - helper::StringToTimeUnit(value, hint); + parsedParameters.ProfileUnit = helper::StringToTimeUnit(value, hint); } else if (key == "opentimeoutsecs") { - parsedParameters.OpenTimeoutSecs = helper::StringTo( - value, " in Parameter key=OpenTimeOutSecs " + hint); + parsedParameters.OpenTimeoutSecs = + helper::StringTo(value, " in Parameter key=OpenTimeOutSecs " + hint); if (parsedParameters.OpenTimeoutSecs < 0.0) { - parsedParameters.OpenTimeoutSecs = - std::numeric_limits::max() / 10000; + parsedParameters.OpenTimeoutSecs = std::numeric_limits::max() / 10000; } } else if (key == "beginsteppollingfrequencysecs") { parsedParameters.BeginStepPollingFrequencySecs = - helper::StringTo( - value, " in Parameter key=OpenTimeOutSecs " + hint); + helper::StringTo(value, " in Parameter key=OpenTimeOutSecs " + hint); if (parsedParameters.BeginStepPollingFrequencySecs < 0.0) { - parsedParameters.BeginStepPollingFrequencySecs = - 1.0; // a second + parsedParameters.BeginStepPollingFrequencySecs = 1.0; // a second } parsedParameters.BeginStepPollingFrequencyIsSet = true; } else if (key == "buffergrowthfactor") { - parsedParameters.GrowthFactor = helper::StringTo( - value, " in Parameter key=BufferGrowthFactor " + hint); + parsedParameters.GrowthFactor = + helper::StringTo(value, " in Parameter key=BufferGrowthFactor " + hint); } else if (key == "initialbuffersize") { @@ -95,8 +88,7 @@ void BPBase::Init(const Params ¶meters, const std::string hint, parsedParameters.InitialBufferSize = helper::StringToByteUnits( value, "for Parameter key=InitialBufferSize, in call to Open"); - if (parsedParameters.InitialBufferSize < - DefaultInitialBufferSize) // 16384b + if (parsedParameters.InitialBufferSize < DefaultInitialBufferSize) // 16384b { helper::Throw( "Toolkit", "format::bp::BPBase", "Init", @@ -112,48 +104,45 @@ void BPBase::Init(const Params ¶meters, const std::string hint, } else if (key == "threads") { - parsedParameters.Threads = - static_cast(helper::StringTo( - value, " in Parameter key=Threads " + hint)); + parsedParameters.Threads = static_cast( + helper::StringTo(value, " in Parameter key=Threads " + hint)); } else if (key == "asyncopen") { - parsedParameters.AsyncOpen = helper::StringTo( - value, " in Parameter key=AsyncOpen " + hint); + parsedParameters.AsyncOpen = + helper::StringTo(value, " in Parameter key=AsyncOpen " + hint); } else if (key == "statslevel") { - parsedParameters.StatsLevel = - static_cast(helper::StringTo( - value, " in Parameter key=StatsLevel " + hint)); + parsedParameters.StatsLevel = static_cast( + helper::StringTo(value, " in Parameter key=StatsLevel " + hint)); if (parsedParameters.StatsLevel > 5) { - helper::Throw( - "Toolkit", "format::bp::BPBase", "Init", - "value for Parameter key=StatsLevel must be " - "an integer in the range [0,5], " + - hint); + helper::Throw("Toolkit", "format::bp::BPBase", "Init", + "value for Parameter key=StatsLevel must be " + "an integer in the range [0,5], " + + hint); } } else if (key == "statsblocksize") { - parsedParameters.StatsBlockSize = helper::StringToSizeT( - value, " in Parameter key=StatsBlockSize " + hint); + parsedParameters.StatsBlockSize = + helper::StringToSizeT(value, " in Parameter key=StatsBlockSize " + hint); } else if (key == "collectivemetadata") { - parsedParameters.CollectiveMetadata = helper::StringTo( - value, " in Parameter key=CollectiveMetadata " + hint); + parsedParameters.CollectiveMetadata = + helper::StringTo(value, " in Parameter key=CollectiveMetadata " + hint); } else if (key == "flushstepscount") { - parsedParameters.FlushStepsCount = helper::StringToSizeT( - value, " in Parameter key=FlushStepsCount " + hint); + parsedParameters.FlushStepsCount = + helper::StringToSizeT(value, " in Parameter key=FlushStepsCount " + hint); } else if (key == "substreams" || key == "numaggregators") { - int n = static_cast(helper::StringTo( - value, " in Parameter key=" + key + " " + hint)); + int n = static_cast( + helper::StringTo(value, " in Parameter key=" + key + " " + hint)); if (n < 0) { @@ -167,8 +156,8 @@ void BPBase::Init(const Params ¶meters, const std::string hint, } else if (key == "aggregatorratio") { - int ratio = static_cast(helper::StringTo( - value, " in Parameter key=AggregatorRatio " + hint)); + int ratio = static_cast( + helper::StringTo(value, " in Parameter key=AggregatorRatio " + hint)); if (ratio > 0) { int n = m_SizeMPI / ratio; @@ -176,9 +165,8 @@ void BPBase::Init(const Params ¶meters, const std::string hint, { helper::Throw( "Toolkit", "format::bp::BPBase", "Init", - "value for Parameter key=AggregatorRatio=" + - std::to_string(ratio) + " must be " + - "an integer divisor of the number of processes=" + + "value for Parameter key=AggregatorRatio=" + std::to_string(ratio) + + " must be " + "an integer divisor of the number of processes=" + std::to_string(m_SizeMPI) + " " + hint); } @@ -195,29 +183,27 @@ void BPBase::Init(const Params ¶meters, const std::string hint, } else if (key == "node-local" || key == "nodelocal") { - parsedParameters.NodeLocal = helper::StringTo( - value, " in Parameter key=NodeLocal " + hint); + parsedParameters.NodeLocal = + helper::StringTo(value, " in Parameter key=NodeLocal " + hint); } else if (key == "burstbufferpath") { - parsedParameters.BurstBufferPath = - helper::RemoveTrailingSlash(value); + parsedParameters.BurstBufferPath = helper::RemoveTrailingSlash(value); } else if (key == "burstbufferdrain") { - parsedParameters.BurstBufferDrain = helper::StringTo( - value, " in Parameter key=BurstBufferDrain " + hint); + parsedParameters.BurstBufferDrain = + helper::StringTo(value, " in Parameter key=BurstBufferDrain " + hint); } else if (key == "burstbufferverbose") { - parsedParameters.BurstBufferVerbose = - static_cast(helper::StringTo( - value, " in Parameter key=BurstBufferVerbose " + hint)); + parsedParameters.BurstBufferVerbose = static_cast( + helper::StringTo(value, " in Parameter key=BurstBufferVerbose " + hint)); } else if (key == "streamreader") { - parsedParameters.StreamReader = helper::StringTo( - value, " in Parameter key=StreamReader " + hint); + parsedParameters.StreamReader = + helper::StringTo(value, " in Parameter key=StreamReader " + hint); } } if (!engineType.empty()) @@ -232,8 +218,7 @@ void BPBase::Init(const Params ¶meters, const std::string hint, m_Parameters.GrowthFactor = parsedParameters.GrowthFactor; // OpenTimeoutSecs is ignored for SST // BeginStepPollingFrequencySecs is inoperative for SST - m_Parameters.StatsLevel = - parsedParameters.StatsLevel; // shouldn't hurt + m_Parameters.StatsLevel = parsedParameters.StatsLevel; // shouldn't hurt m_Parameters.Threads = parsedParameters.Threads; m_Parameters.ProfileUnit = parsedParameters.ProfileUnit; // AsyncOpen has no impact on SST @@ -264,24 +249,18 @@ void BPBase::Init(const Params ¶meters, const std::string hint, if (m_Profiler.m_IsActive) { const TimeUnit timeUnit = m_Parameters.ProfileUnit; - m_Profiler.m_Timers.emplace("buffering", - profiling::Timer("buffering", timeUnit)); - m_Profiler.m_Timers.emplace("memcpy", - profiling::Timer("memcpy", timeUnit)); - m_Profiler.m_Timers.emplace("minmax", - profiling::Timer("minmax", timeUnit)); - m_Profiler.m_Timers.emplace( - "meta_sort_merge", profiling::Timer("meta_sort_merge", timeUnit)); - m_Profiler.m_Timers.emplace("aggregation", - profiling::Timer("aggregation", timeUnit)); - m_Profiler.m_Timers.emplace("mkdir", - profiling::Timer("mkdir", timeUnit)); + m_Profiler.m_Timers.emplace("buffering", profiling::Timer("buffering", timeUnit)); + m_Profiler.m_Timers.emplace("memcpy", profiling::Timer("memcpy", timeUnit)); + m_Profiler.m_Timers.emplace("minmax", profiling::Timer("minmax", timeUnit)); + m_Profiler.m_Timers.emplace("meta_sort_merge", + profiling::Timer("meta_sort_merge", timeUnit)); + m_Profiler.m_Timers.emplace("aggregation", profiling::Timer("aggregation", timeUnit)); + m_Profiler.m_Timers.emplace("mkdir", profiling::Timer("mkdir", timeUnit)); m_Profiler.m_Bytes.emplace("buffering", 0); } } -BPBase::ResizeResult BPBase::ResizeBuffer(const size_t dataIn, - const std::string hint) +BPBase::ResizeResult BPBase::ResizeBuffer(const size_t dataIn, const std::string hint) { m_Profiler.Start("buffering"); const size_t currentSize = m_Data.m_Buffer.size(); @@ -294,11 +273,9 @@ BPBase::ResizeResult BPBase::ResizeBuffer(const size_t dataIn, { helper::Throw( "Toolkit", "format::bp::BPBase", "ResizeBuffer", - "data size: " + - std::to_string(static_cast(dataIn) / (1024. * 1024.)) + + "data size: " + std::to_string(static_cast(dataIn) / (1024. * 1024.)) + " Mb is too large for adios2 bp MaxBufferSize=" + - std::to_string(static_cast(maxBufferSize) / - (1024. * 1024.)) + + std::to_string(static_cast(maxBufferSize) / (1024. * 1024.)) + "Mb, try increasing MaxBufferSize in call to IO " "SetParameters " + hint); @@ -313,8 +290,8 @@ BPBase::ResizeResult BPBase::ResizeBuffer(const size_t dataIn, if (currentSize < maxBufferSize) { m_Data.Resize(maxBufferSize, " when resizing buffer to " + - std::to_string(maxBufferSize) + - "bytes, " + hint + "\n"); + std::to_string(maxBufferSize) + "bytes, " + hint + + "\n"); } result = ResizeResult::Flush; } @@ -323,12 +300,11 @@ BPBase::ResizeResult BPBase::ResizeBuffer(const size_t dataIn, if (currentSize < maxBufferSize) { const float growthFactor = m_Parameters.GrowthFactor; - const size_t nextSize = std::min( - maxBufferSize, helper::NextExponentialSize( - requiredSize, currentSize, growthFactor)); - m_Data.Resize(nextSize, " when resizing buffer to " + - std::to_string(nextSize) + "bytes, " + - hint); + const size_t nextSize = + std::min(maxBufferSize, + helper::NextExponentialSize(requiredSize, currentSize, growthFactor)); + m_Data.Resize(nextSize, " when resizing buffer to " + std::to_string(nextSize) + + "bytes, " + hint); result = ResizeResult::Success; } } @@ -354,8 +330,8 @@ void BPBase::DeleteBuffers() } // PROTECTED -std::vector BPBase::GetTransportIDs( - const std::vector &transportsTypes) const noexcept +std::vector +BPBase::GetTransportIDs(const std::vector &transportsTypes) const noexcept { auto lf_GetTransportID = [](const std::string method) -> uint8_t { int id = METHOD_UNKNOWN; @@ -394,43 +370,34 @@ std::vector BPBase::GetTransportIDs( return transportsIDs; } -size_t -BPBase::GetProcessGroupIndexSize(const std::string name, - const std::string timeStepName, - const size_t transportsSize) const noexcept +size_t BPBase::GetProcessGroupIndexSize(const std::string name, const std::string timeStepName, + const size_t transportsSize) const noexcept { // pgIndex + list of methods (transports) - const size_t pgSize = - (name.length() + timeStepName.length() + 23) + (3 + transportsSize); + const size_t pgSize = (name.length() + timeStepName.length() + 23) + (3 + transportsSize); return pgSize; } BPBase::ProcessGroupIndex -BPBase::ReadProcessGroupIndexHeader(const std::vector &buffer, - size_t &position, +BPBase::ReadProcessGroupIndexHeader(const std::vector &buffer, size_t &position, const bool isLittleEndian) const noexcept { ProcessGroupIndex index; - index.Length = - helper::ReadValue(buffer, position, isLittleEndian); + index.Length = helper::ReadValue(buffer, position, isLittleEndian); index.Name = ReadBPString(buffer, position, isLittleEndian); - index.IsColumnMajor = - helper::ReadValue(buffer, position, isLittleEndian); - index.ProcessID = - helper::ReadValue(buffer, position, isLittleEndian); + index.IsColumnMajor = helper::ReadValue(buffer, position, isLittleEndian); + index.ProcessID = helper::ReadValue(buffer, position, isLittleEndian); index.StepName = ReadBPString(buffer, position, isLittleEndian); index.Step = helper::ReadValue(buffer, position, isLittleEndian); - index.Offset = - helper::ReadValue(buffer, position, isLittleEndian); + index.Offset = helper::ReadValue(buffer, position, isLittleEndian); return index; } -std::string BPBase::ReadBPString(const std::vector &buffer, - size_t &position, +std::string BPBase::ReadBPString(const std::vector &buffer, size_t &position, const bool isLittleEndian) const noexcept { - const size_t size = static_cast( - helper::ReadValue(buffer, position, isLittleEndian)); + const size_t size = + static_cast(helper::ReadValue(buffer, position, isLittleEndian)); if (size == 0) { @@ -443,9 +410,9 @@ std::string BPBase::ReadBPString(const std::vector &buffer, } // static members -const std::set BPBase::m_TransformTypes = { - {"unknown", "none", "identity", "bzip2", "sz", "zfp", "mgard", "png", - "blosc", "sirius", "mgardplus", "plugin"}}; +const std::set BPBase::m_TransformTypes = {{"unknown", "none", "identity", "bzip2", + "sz", "zfp", "mgard", "png", "blosc", + "sirius", "mgardplus", "plugin"}}; const std::map BPBase::m_TransformTypesToNames = { {transform_unknown, "unknown"}, @@ -461,8 +428,7 @@ const std::map BPBase::m_TransformTypesToNames = { {transform_mgardplus, "mgardplus"}, {transform_plugin, "plugin"}}; -BPBase::TransformTypes -BPBase::TransformTypeEnum(const std::string transformType) const noexcept +BPBase::TransformTypes BPBase::TransformTypeEnum(const std::string transformType) const noexcept { TransformTypes transformEnum = transform_unknown; @@ -477,12 +443,10 @@ BPBase::TransformTypeEnum(const std::string transformType) const noexcept return transformEnum; } -#define declare_template_instantiation(T) \ - template BPBase::Characteristics \ - BPBase::ReadElementIndexCharacteristics(const std::vector &, \ - size_t &, const BPBase::DataTypes, \ - size_t &, const bool, const bool) \ - const; +#define declare_template_instantiation(T) \ + template BPBase::Characteristics BPBase::ReadElementIndexCharacteristics( \ + const std::vector &, size_t &, const BPBase::DataTypes, size_t &, const bool, \ + const bool) const; ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation diff --git a/source/adios2/toolkit/format/bp/BPBase.h b/source/adios2/toolkit/format/bp/BPBase.h index 1c1f7ad4f8..e22ae464fe 100644 --- a/source/adios2/toolkit/format/bp/BPBase.h +++ b/source/adios2/toolkit/format/bp/BPBase.h @@ -79,8 +79,7 @@ class BPBase * @param memberID id input from bp format * @param bufferSize initial buffer size */ - SerialElementIndex(const uint32_t memberID, - const size_t bufferSize = 200); + SerialElementIndex(const uint32_t memberID, const size_t bufferSize = 200); }; struct MetadataSet @@ -309,8 +308,7 @@ class BPBase * Init base don parameters passed from the user to IO * @param parameters input parameters */ - void Init(const Params ¶meters, const std::string hint, - const std::string engineType = ""); + void Init(const Params ¶meters, const std::string hint, const std::string engineType = ""); /****************** NEED to check if some are virtual */ @@ -412,12 +410,12 @@ class BPBase /** Characteristic ID in variable metadata, legacy adios1 */ enum CharacteristicID { - characteristic_value = 0, //!< characteristic_value - characteristic_min = 1, //!< Used to read in older bp file format - characteristic_max = 2, //!< Used to read in older bp file format - characteristic_offset = 3, //!< characteristic_offset - characteristic_dimensions = 4, //!< characteristic_dimensions - characteristic_var_id = 5, //!< characteristic_var_id + characteristic_value = 0, //!< characteristic_value + characteristic_min = 1, //!< Used to read in older bp file format + characteristic_max = 2, //!< Used to read in older bp file format + characteristic_offset = 3, //!< characteristic_offset + characteristic_dimensions = 4, //!< characteristic_dimensions + characteristic_var_id = 5, //!< characteristic_var_id characteristic_payload_offset = 6, //!< characteristic_payload_offset characteristic_file_index = 7, //!< characteristic_file_index characteristic_time_index = 8, //!< characteristic_time_index @@ -474,8 +472,7 @@ class BPBase * @param transformType input * @return corresponding enum TransformTypes */ - TransformTypes - TransformTypeEnum(const std::string transformType) const noexcept; + TransformTypes TransformTypeEnum(const std::string transformType) const noexcept; /** * Returns the proper derived class for BPOperation based on type @@ -567,8 +564,8 @@ class BPBase * @param transportsTypes input user transports * @return vector with enum IO_METHOD */ - std::vector GetTransportIDs( - const std::vector &transportsTypes) const noexcept; + std::vector + GetTransportIDs(const std::vector &transportsTypes) const noexcept; /** * Calculates the Process Index size in bytes according to the BP @@ -579,8 +576,7 @@ class BPBase * @param transportsSize * @return size of pg index */ - size_t GetProcessGroupIndexSize(const std::string name, - const std::string timeStepName, + size_t GetProcessGroupIndexSize(const std::string name, const std::string timeStepName, const size_t transportsSize) const noexcept; /** @@ -591,9 +587,8 @@ class BPBase * @param isLittleEndian true: buffer is little endian, false: big endian * @return populated PGIndex struct */ - ProcessGroupIndex ReadProcessGroupIndexHeader( - const std::vector &buffer, size_t &position, - const bool isLittleEndian = true) const noexcept; + ProcessGroupIndex ReadProcessGroupIndexHeader(const std::vector &buffer, size_t &position, + const bool isLittleEndian = true) const noexcept; /** * Reads a PG index from a buffer position and advances the position until @@ -617,12 +612,11 @@ class BPBase * @return populated Characteristics struct */ template - Characteristics - ReadElementIndexCharacteristics(const std::vector &buffer, - size_t &position, const DataTypes dataType, - size_t &joinedArrayShapePos, - const bool untilTimeStep = false, - const bool isLittleEndian = true) const; + Characteristics ReadElementIndexCharacteristics(const std::vector &buffer, + size_t &position, const DataTypes dataType, + size_t &joinedArrayShapePos, + const bool untilTimeStep = false, + const bool isLittleEndian = true) const; /** * Common function to extract a BP standard string, 2 bytes for length + @@ -641,10 +635,8 @@ class BPBase */ template void ParseCharacteristics(const std::vector &buffer, size_t &position, - const DataTypes dataType, - const bool untilTimeStep, - Characteristics &characteristics, - size_t &joinedArrayShapePos, + const DataTypes dataType, const bool untilTimeStep, + Characteristics &characteristics, size_t &joinedArrayShapePos, const bool isLittleEndian = true) const; }; diff --git a/source/adios2/toolkit/format/bp/BPBase.tcc b/source/adios2/toolkit/format/bp/BPBase.tcc index 9820cbdf1a..19b8a0d31c 100644 --- a/source/adios2/toolkit/format/bp/BPBase.tcc +++ b/source/adios2/toolkit/format/bp/BPBase.tcc @@ -23,29 +23,28 @@ namespace format // PROTECTED template -BPBase::Characteristics BPBase::ReadElementIndexCharacteristics( - const std::vector &buffer, size_t &position, const DataTypes dataType, - size_t &joinedArrayShapePos, const bool untilTimeStep, - const bool isLittleEndian) const +BPBase::Characteristics +BPBase::ReadElementIndexCharacteristics(const std::vector &buffer, size_t &position, + const DataTypes dataType, size_t &joinedArrayShapePos, + const bool untilTimeStep, const bool isLittleEndian) const { Characteristics characteristics; - characteristics.EntryCount = - helper::ReadValue(buffer, position, isLittleEndian); - characteristics.EntryLength = - helper::ReadValue(buffer, position, isLittleEndian); + characteristics.EntryCount = helper::ReadValue(buffer, position, isLittleEndian); + characteristics.EntryLength = helper::ReadValue(buffer, position, isLittleEndian); - ParseCharacteristics(buffer, position, dataType, untilTimeStep, - characteristics, joinedArrayShapePos, isLittleEndian); + ParseCharacteristics(buffer, position, dataType, untilTimeStep, characteristics, + joinedArrayShapePos, isLittleEndian); return characteristics; } // String specialization template <> -inline void BPBase::ParseCharacteristics( - const std::vector &buffer, size_t &position, const DataTypes dataType, - const bool untilTimeStep, Characteristics &characteristics, - size_t &joinedArrayShapePos, const bool isLittleEndian) const +inline void BPBase::ParseCharacteristics(const std::vector &buffer, size_t &position, + const DataTypes dataType, const bool untilTimeStep, + Characteristics &characteristics, + size_t &joinedArrayShapePos, + const bool isLittleEndian) const { const size_t start = position; size_t localPosition = 0; @@ -55,8 +54,7 @@ inline void BPBase::ParseCharacteristics( while (localPosition < characteristics.EntryLength) { - const uint8_t id = - helper::ReadValue(buffer, position, isLittleEndian); + const uint8_t id = helper::ReadValue(buffer, position, isLittleEndian); switch (id) { @@ -77,8 +75,7 @@ inline void BPBase::ParseCharacteristics( if (dataType == type_string) { // first get the length of the string - characteristics.Statistics.Value = - ReadBPString(buffer, position, isLittleEndian); + characteristics.Statistics.Value = ReadBPString(buffer, position, isLittleEndian); characteristics.Statistics.IsValue = true; } else if (dataType == type_string_array) @@ -94,9 +91,8 @@ inline void BPBase::ParseCharacteristics( for (size_t e = 0; e < elements; ++e) { - const size_t length = - static_cast(helper::ReadValue( - buffer, position, isLittleEndian)); + const size_t length = static_cast( + helper::ReadValue(buffer, position, isLittleEndian)); characteristics.Statistics.Values.push_back( std::string(&buffer[position], length)); @@ -122,13 +118,12 @@ inline void BPBase::ParseCharacteristics( case (characteristic_dimensions): { auto lf_CheckEmpty = [](const Dims &dimensions) -> bool { - return std::all_of( - dimensions.begin(), dimensions.end(), - [](const size_t dimension) { return dimension == 0; }); + return std::all_of(dimensions.begin(), dimensions.end(), + [](const size_t dimension) { return dimension == 0; }); }; - const size_t dimensionsSize = static_cast( - helper::ReadValue(buffer, position, isLittleEndian)); + const size_t dimensionsSize = + static_cast(helper::ReadValue(buffer, position, isLittleEndian)); characteristics.Shape.reserve(dimensionsSize); characteristics.Start.reserve(dimensionsSize); @@ -137,17 +132,14 @@ inline void BPBase::ParseCharacteristics( for (size_t d = 0; d < dimensionsSize; ++d) { - characteristics.Count.push_back( - static_cast(helper::ReadValue( - buffer, position, isLittleEndian))); + characteristics.Count.push_back(static_cast( + helper::ReadValue(buffer, position, isLittleEndian))); - characteristics.Shape.push_back( - static_cast(helper::ReadValue( - buffer, position, isLittleEndian))); + characteristics.Shape.push_back(static_cast( + helper::ReadValue(buffer, position, isLittleEndian))); - characteristics.Start.push_back( - static_cast(helper::ReadValue( - buffer, position, isLittleEndian))); + characteristics.Start.push_back(static_cast( + helper::ReadValue(buffer, position, isLittleEndian))); } // check for local variables @@ -184,10 +176,8 @@ inline void BPBase::ParseCharacteristics( } template -inline void BPBase::ParseCharacteristics(const std::vector &buffer, - size_t &position, - const DataTypes /*dataType*/, - const bool untilTimeStep, +inline void BPBase::ParseCharacteristics(const std::vector &buffer, size_t &position, + const DataTypes /*dataType*/, const bool untilTimeStep, Characteristics &characteristics, size_t &joinedArrayShapePos, const bool isLittleEndian) const @@ -231,10 +221,8 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, characteristics.EntryShapeID = ShapeID::GlobalValue; } // adding Min Max for global and local values - characteristics.Statistics.Min = - characteristics.Statistics.Value; - characteristics.Statistics.Max = - characteristics.Statistics.Value; + characteristics.Statistics.Min = characteristics.Statistics.Value; + characteristics.Statistics.Max = characteristics.Statistics.Value; } else // used for attributes { @@ -244,19 +232,16 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, #ifdef ADIOS2_HAVE_ENDIAN_REVERSE if (helper::IsLittleEndian() != isLittleEndian) { - helper::ReverseCopyFromBuffer( - buffer, position, - characteristics.Statistics.Values.data(), size); + helper::ReverseCopyFromBuffer(buffer, position, + characteristics.Statistics.Values.data(), size); } else { - helper::CopyFromBuffer( - buffer, position, - characteristics.Statistics.Values.data(), size); + helper::CopyFromBuffer(buffer, position, + characteristics.Statistics.Values.data(), size); } #else - helper::CopyFromBuffer(buffer, position, - characteristics.Statistics.Values.data(), + helper::CopyFromBuffer(buffer, position, characteristics.Statistics.Values.data(), size); #endif } @@ -264,47 +249,37 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, } case (characteristic_min): { - characteristics.Statistics.Min = - helper::ReadValue(buffer, position, isLittleEndian); + characteristics.Statistics.Min = helper::ReadValue(buffer, position, isLittleEndian); break; } case (characteristic_max): { - characteristics.Statistics.Max = - helper::ReadValue(buffer, position, isLittleEndian); + characteristics.Statistics.Max = helper::ReadValue(buffer, position, isLittleEndian); break; } case (characteristic_minmax): { // first get the number of subblocks - const uint16_t subBlocks = - helper::ReadValue(buffer, position); + const uint16_t subBlocks = helper::ReadValue(buffer, position); // block-level min/max - characteristics.Statistics.Min = - helper::ReadValue(buffer, position, isLittleEndian); - characteristics.Statistics.Max = - helper::ReadValue(buffer, position, isLittleEndian); + characteristics.Statistics.Min = helper::ReadValue(buffer, position, isLittleEndian); + characteristics.Statistics.Max = helper::ReadValue(buffer, position, isLittleEndian); if (subBlocks > 1) { characteristics.Statistics.SubBlockInfo.DivisionMethod = static_cast( - helper::ReadValue(buffer, position, - isLittleEndian)); - characteristics.Statistics.SubBlockInfo.SubBlockSize = - static_cast(helper::ReadValue( - buffer, position, isLittleEndian)); - - characteristics.Statistics.SubBlockInfo.Div.resize( - dimensionsSize); + helper::ReadValue(buffer, position, isLittleEndian)); + characteristics.Statistics.SubBlockInfo.SubBlockSize = static_cast( + helper::ReadValue(buffer, position, isLittleEndian)); + + characteristics.Statistics.SubBlockInfo.Div.resize(dimensionsSize); for (size_t d = 0; d < dimensionsSize; ++d) { characteristics.Statistics.SubBlockInfo.Div[d] = - helper::ReadValue(buffer, position, - isLittleEndian); + helper::ReadValue(buffer, position, isLittleEndian); } characteristics.Statistics.MinMaxs.resize(2 * subBlocks); - helper::ReadArray(buffer, position, - characteristics.Statistics.MinMaxs.data(), + helper::ReadArray(buffer, position, characteristics.Statistics.MinMaxs.data(), 2 * subBlocks, isLittleEndian); } break; @@ -324,13 +299,12 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, case (characteristic_dimensions): { auto lf_CheckEmpty = [](const Dims &dimensions) -> bool { - return std::all_of( - dimensions.begin(), dimensions.end(), - [](const size_t dimension) { return dimension == 0; }); + return std::all_of(dimensions.begin(), dimensions.end(), + [](const size_t dimension) { return dimension == 0; }); }; - dimensionsSize = static_cast( - helper::ReadValue(buffer, position, isLittleEndian)); + dimensionsSize = + static_cast(helper::ReadValue(buffer, position, isLittleEndian)); characteristics.Shape.reserve(dimensionsSize); characteristics.Start.reserve(dimensionsSize); @@ -339,13 +313,11 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, for (size_t d = 0; d < dimensionsSize; ++d) { - characteristics.Count.push_back( - static_cast(helper::ReadValue( - buffer, position, isLittleEndian))); + characteristics.Count.push_back(static_cast( + helper::ReadValue(buffer, position, isLittleEndian))); - uint64_t shape = - static_cast(helper::ReadValue( - buffer, position, isLittleEndian)); + uint64_t shape = static_cast( + helper::ReadValue(buffer, position, isLittleEndian)); characteristics.Shape.push_back(shape); if (shape == JoinedDim) @@ -353,8 +325,7 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, if (foundJoinedDim) { helper::Throw( - "Toolkit", "format::bp::BPBase", - "ParseCharacteristics", + "Toolkit", "format::bp::BPBase", "ParseCharacteristics", "Invalid Joined Array definition with multiple " "JoinedDim in Shape."); } @@ -363,9 +334,8 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, joinedArrayShapePos = position; } - characteristics.Start.push_back( - static_cast(helper::ReadValue( - buffer, position, isLittleEndian))); + characteristics.Start.push_back(static_cast( + helper::ReadValue(buffer, position, isLittleEndian))); } // check for local variables (Start and Shape must be all zero) const bool emptyShape = lf_CheckEmpty(characteristics.Shape); @@ -411,8 +381,8 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, } case (characteristic_bitmap): { - characteristics.Statistics.Bitmap = std::bitset<32>( - helper::ReadValue(buffer, position, isLittleEndian)); + characteristics.Statistics.Bitmap = + std::bitset<32>(helper::ReadValue(buffer, position, isLittleEndian)); break; } @@ -429,8 +399,7 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, continue; } - const VariableStatistics bitStat = - static_cast(i); + const VariableStatistics bitStat = static_cast(i); switch (bitStat) { @@ -446,32 +415,28 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, } case (statistic_sum): { characteristics.Statistics.BitSum = - helper::ReadValue(buffer, position, - isLittleEndian); + helper::ReadValue(buffer, position, isLittleEndian); break; } case (statistic_sum_square): { characteristics.Statistics.BitSumSquare = - helper::ReadValue(buffer, position, - isLittleEndian); + helper::ReadValue(buffer, position, isLittleEndian); break; } case (statistic_finite): { characteristics.Statistics.BitFinite = - helper::ReadValue(buffer, position, - isLittleEndian); + helper::ReadValue(buffer, position, isLittleEndian); break; } case (statistic_hist): { - helper::Throw( - "Toolkit", "format::bp::BPBase", "ParseCharacteristics", - "ADIOS2 default engine doesn't support " - "histogram statistics"); + helper::Throw("Toolkit", "format::bp::BPBase", + "ParseCharacteristics", + "ADIOS2 default engine doesn't support " + "histogram statistics"); } case (statistic_cnt): { characteristics.Statistics.BitCount = - helper::ReadValue(buffer, position, - isLittleEndian); + helper::ReadValue(buffer, position, isLittleEndian); } } // switch @@ -480,17 +445,16 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, } case (characteristic_transform_type): { - const size_t typeLength = static_cast( - helper::ReadValue(buffer, position, isLittleEndian)); - characteristics.Statistics.Op.Type = - std::string(&buffer[position], typeLength); + const size_t typeLength = + static_cast(helper::ReadValue(buffer, position, isLittleEndian)); + characteristics.Statistics.Op.Type = std::string(&buffer[position], typeLength); position += typeLength; characteristics.Statistics.Op.PreDataType = helper::ReadValue(buffer, position, isLittleEndian); - const size_t dimensionsSize = static_cast( - helper::ReadValue(buffer, position, isLittleEndian)); + const size_t dimensionsSize = + static_cast(helper::ReadValue(buffer, position, isLittleEndian)); characteristics.Statistics.Op.PreShape.reserve(dimensionsSize); characteristics.Statistics.Op.PreStart.reserve(dimensionsSize); @@ -499,25 +463,21 @@ inline void BPBase::ParseCharacteristics(const std::vector &buffer, for (size_t d = 0; d < dimensionsSize; ++d) { - characteristics.Statistics.Op.PreCount.push_back( - static_cast(helper::ReadValue( - buffer, position, isLittleEndian))); + characteristics.Statistics.Op.PreCount.push_back(static_cast( + helper::ReadValue(buffer, position, isLittleEndian))); - characteristics.Statistics.Op.PreShape.push_back( - static_cast(helper::ReadValue( - buffer, position, isLittleEndian))); + characteristics.Statistics.Op.PreShape.push_back(static_cast( + helper::ReadValue(buffer, position, isLittleEndian))); - characteristics.Statistics.Op.PreStart.push_back( - static_cast(helper::ReadValue( - buffer, position, isLittleEndian))); + characteristics.Statistics.Op.PreStart.push_back(static_cast( + helper::ReadValue(buffer, position, isLittleEndian))); } - const size_t metadataLength = static_cast( - helper::ReadValue(buffer, position, isLittleEndian)); + const size_t metadataLength = + static_cast(helper::ReadValue(buffer, position, isLittleEndian)); - characteristics.Statistics.Op.Metadata = - std::vector(buffer.begin() + position, - buffer.begin() + position + metadataLength); + characteristics.Statistics.Op.Metadata = std::vector( + buffer.begin() + position, buffer.begin() + position + metadataLength); position += metadataLength; characteristics.Statistics.Op.IsActive = true; diff --git a/source/adios2/toolkit/format/bp/BPSerializer.cpp b/source/adios2/toolkit/format/bp/BPSerializer.cpp index 6be97f597d..57c9100fc9 100644 --- a/source/adios2/toolkit/format/bp/BPSerializer.cpp +++ b/source/adios2/toolkit/format/bp/BPSerializer.cpp @@ -45,8 +45,7 @@ std::string BPSerializer::GetRankProfilingJSON( const std::vector &transportsTypes, const std::vector &transportsProfilers) noexcept { - auto lf_WriterTimer = [](std::string &rankLog, - const profiling::Timer &timer) { + auto lf_WriterTimer = [](std::string &rankLog, const profiling::Timer &timer) { rankLog += ", \"" + timer.m_Process + "_" + timer.GetShortUnits() + "\": " + std::to_string(timer.m_ProcessTime); }; @@ -63,8 +62,7 @@ std::string BPSerializer::GetRankProfilingJSON( rankLog += ", \"start\": \"" + timeDate + "\""; rankLog += ", \"threads\": " + std::to_string(m_Parameters.Threads); - rankLog += - ", \"bytes\": " + std::to_string(profiler.m_Bytes.at("buffering")); + rankLog += ", \"bytes\": " + std::to_string(profiler.m_Bytes.at("buffering")); for (const auto &timerPair : profiler.m_Timers) { @@ -91,8 +89,7 @@ std::string BPSerializer::GetRankProfilingJSON( return rankLog; } -std::vector -BPSerializer::AggregateProfilingJSON(const std::string &rankLog) const +std::vector BPSerializer::AggregateProfilingJSON(const std::string &rankLog) const { // Gather sizes const size_t rankLogSize = rankLog.size(); @@ -107,12 +104,10 @@ BPSerializer::AggregateProfilingJSON(const std::string &rankLog) const if (m_RankMPI == 0) // pre-allocate in destination { - gatheredSize = std::accumulate(rankLogsSizes.begin(), - rankLogsSizes.end(), size_t(0)); + gatheredSize = std::accumulate(rankLogsSizes.begin(), rankLogsSizes.end(), size_t(0)); profilingJSON.resize(gatheredSize + header.size() + footer.size() - 2); - helper::CopyToBuffer(profilingJSON, position, header.c_str(), - header.size()); + helper::CopyToBuffer(profilingJSON, position, header.c_str(), header.size()); } m_Comm.GathervArrays(rankLog.c_str(), rankLog.size(), rankLogsSizes.data(), @@ -121,23 +116,20 @@ BPSerializer::AggregateProfilingJSON(const std::string &rankLog) const if (m_RankMPI == 0) // add footer to close JSON { position += gatheredSize - 2; - helper::CopyToBuffer(profilingJSON, position, footer.c_str(), - footer.size()); + helper::CopyToBuffer(profilingJSON, position, footer.c_str(), footer.size()); } return profilingJSON; } -void BPSerializer::PutNameRecord(const std::string name, - std::vector &buffer) noexcept +void BPSerializer::PutNameRecord(const std::string name, std::vector &buffer) noexcept { const uint16_t length = static_cast(name.size()); helper::InsertToBuffer(buffer, &length); helper::InsertToBuffer(buffer, name.c_str(), name.size()); } -void BPSerializer::PutNameRecord(const std::string name, - std::vector &buffer, +void BPSerializer::PutNameRecord(const std::string name, std::vector &buffer, size_t &position) noexcept { const uint16_t length = static_cast(name.length()); @@ -145,10 +137,8 @@ void BPSerializer::PutNameRecord(const std::string name, helper::CopyToBuffer(buffer, position, name.c_str(), length); } -void BPSerializer::PutDimensionsRecord(const Dims &localDimensions, - const Dims &globalDimensions, - const Dims &offsets, - std::vector &buffer) noexcept +void BPSerializer::PutDimensionsRecord(const Dims &localDimensions, const Dims &globalDimensions, + const Dims &offsets, std::vector &buffer) noexcept { if (offsets.empty() && globalDimensions.empty()) { // local array @@ -178,15 +168,11 @@ void BPSerializer::PutDimensionsRecord(const Dims &localDimensions, } } -void BPSerializer::PutDimensionsRecord(const Dims &localDimensions, - const Dims &globalDimensions, - const Dims &offsets, - std::vector &buffer, - size_t &position, - const bool isCharacteristic) noexcept +void BPSerializer::PutDimensionsRecord(const Dims &localDimensions, const Dims &globalDimensions, + const Dims &offsets, std::vector &buffer, + size_t &position, const bool isCharacteristic) noexcept { - auto lf_CopyDimension = [](std::vector &buffer, size_t &position, - const size_t dimension, + auto lf_CopyDimension = [](std::vector &buffer, size_t &position, const size_t dimension, const bool isCharacteristic) { if (!isCharacteristic) { @@ -210,8 +196,7 @@ void BPSerializer::PutDimensionsRecord(const Dims &localDimensions, for (const auto &localDimension : localDimensions) { - lf_CopyDimension(buffer, position, localDimension, - isCharacteristic); + lf_CopyDimension(buffer, position, localDimension, isCharacteristic); position += globalBoundsSkip; } } @@ -221,10 +206,8 @@ void BPSerializer::PutDimensionsRecord(const Dims &localDimensions, size_t zeroOffset = 0; for (unsigned int d = 0; d < localDimensions.size(); ++d) { - lf_CopyDimension(buffer, position, localDimensions[d], - isCharacteristic); - lf_CopyDimension(buffer, position, globalDimensions[d], - isCharacteristic); + lf_CopyDimension(buffer, position, localDimensions[d], isCharacteristic); + lf_CopyDimension(buffer, position, globalDimensions[d], isCharacteristic); lf_CopyDimension(buffer, position, zeroOffset, isCharacteristic); } } @@ -232,23 +215,19 @@ void BPSerializer::PutDimensionsRecord(const Dims &localDimensions, { for (unsigned int d = 0; d < localDimensions.size(); ++d) { - lf_CopyDimension(buffer, position, localDimensions[d], - isCharacteristic); - lf_CopyDimension(buffer, position, globalDimensions[d], - isCharacteristic); + lf_CopyDimension(buffer, position, localDimensions[d], isCharacteristic); + lf_CopyDimension(buffer, position, globalDimensions[d], isCharacteristic); lf_CopyDimension(buffer, position, offsets[d], isCharacteristic); } } } -void BPSerializer::PutMinifooter(const uint64_t pgIndexStart, - const uint64_t variablesIndexStart, - const uint64_t attributesIndexStart, - std::vector &buffer, size_t &position, - const bool addSubfiles) +void BPSerializer::PutMinifooter(const uint64_t pgIndexStart, const uint64_t variablesIndexStart, + const uint64_t attributesIndexStart, std::vector &buffer, + size_t &position, const bool addSubfiles) { - auto lf_CopyVersionChar = [](const std::string version, - std::vector &buffer, size_t &position) { + auto lf_CopyVersionChar = [](const std::string version, std::vector &buffer, + size_t &position) { helper::CopyToBuffer(buffer, position, version.c_str()); }; @@ -256,13 +235,12 @@ void BPSerializer::PutMinifooter(const uint64_t pgIndexStart, const std::string minorVersion(std::to_string(ADIOS2_VERSION_MINOR)); const std::string patchVersion(std::to_string(ADIOS2_VERSION_PATCH)); - const std::string versionLongTag("ADIOS-BP v" + majorVersion + "." + - minorVersion + "." + patchVersion); + const std::string versionLongTag("ADIOS-BP v" + majorVersion + "." + minorVersion + "." + + patchVersion); const size_t versionLongTagSize = versionLongTag.size(); if (versionLongTagSize < 24) { - helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), - versionLongTagSize); + helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), versionLongTagSize); position += 24 - versionLongTagSize; } else @@ -305,12 +283,11 @@ void BPSerializer::UpdateOffsetsInMetadata() while (currentPosition < buffer.size()) { - ProcessGroupIndex pgIndex = ReadProcessGroupIndexHeader( - buffer, currentPosition, isLittleEndian); + ProcessGroupIndex pgIndex = + ReadProcessGroupIndexHeader(buffer, currentPosition, isLittleEndian); const uint64_t updatedOffset = - pgIndex.Offset + - static_cast(m_Data.m_AbsolutePosition); + pgIndex.Offset + static_cast(m_Data.m_AbsolutePosition); currentPosition -= sizeof(uint64_t); helper::CopyToBuffer(buffer, currentPosition, &updatedOffset); } @@ -321,8 +298,8 @@ void BPSerializer::UpdateOffsetsInMetadata() // First get the type: size_t headerPosition = 0; - ElementIndexHeader header = ReadElementIndexHeader( - buffer, headerPosition, helper::IsLittleEndian()); + ElementIndexHeader header = + ReadElementIndexHeader(buffer, headerPosition, helper::IsLittleEndian()); const DataTypes dataTypeEnum = static_cast(header.DataType); size_t ¤tPosition = index.LastUpdatedPosition; @@ -338,11 +315,10 @@ void BPSerializer::UpdateOffsetsInMetadata() break; } -#define make_case(T) \ - case (TypeTraits::type_enum): { \ - UpdateIndexOffsetsCharacteristics( \ - currentPosition, TypeTraits::type_enum, buffer); \ - break; \ +#define make_case(T) \ + case (TypeTraits::type_enum): { \ + UpdateIndexOffsetsCharacteristics(currentPosition, TypeTraits::type_enum, buffer); \ + break; \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(make_case) #undef make_case @@ -350,8 +326,7 @@ void BPSerializer::UpdateOffsetsInMetadata() default: // TODO: complex, long double helper::Throw( - "Toolkit", "format::bp::BPSerializer", - "UpdateOffsetsInMetadata", + "Toolkit", "format::bp::BPSerializer", "UpdateOffsetsInMetadata", "type " + std::to_string(header.DataType) + " not supported in updating aggregated offsets"); @@ -377,13 +352,11 @@ void BPSerializer::UpdateOffsetsInMetadata() } void BPSerializer::MergeSerializeIndices( - const std::unordered_map> - &nameRankIndices, + const std::unordered_map> &nameRankIndices, helper::Comm const &comm, BufferSTL &bufferSTL) { - auto lf_GetCharacteristics = [&](const std::vector &buffer, - size_t &position, const uint8_t dataType, - uint8_t &count, uint32_t &length, + auto lf_GetCharacteristics = [&](const std::vector &buffer, size_t &position, + const uint8_t dataType, uint8_t &count, uint32_t &length, uint32_t &timeStep) { @@ -393,26 +366,23 @@ void BPSerializer::MergeSerializeIndices( switch (dataTypeEnum) { -#define make_case(T) \ - case (TypeTraits::type_enum): { \ - size_t irrelevant; \ - const auto characteristics = ReadElementIndexCharacteristics( \ - buffer, position, TypeTraits::type_enum, irrelevant, true, \ - isLittleEndian); \ - count = characteristics.EntryCount; \ - length = characteristics.EntryLength; \ - timeStep = characteristics.Statistics.Step; \ - break; \ +#define make_case(T) \ + case (TypeTraits::type_enum): { \ + size_t irrelevant; \ + const auto characteristics = ReadElementIndexCharacteristics( \ + buffer, position, TypeTraits::type_enum, irrelevant, true, isLittleEndian); \ + count = characteristics.EntryCount; \ + length = characteristics.EntryLength; \ + timeStep = characteristics.Statistics.Step; \ + break; \ } ADIOS2_FOREACH_STDTYPE_1ARG(make_case) #undef make_case case (type_string_array): { size_t irrelevant; - const auto characteristics = - ReadElementIndexCharacteristics( - buffer, position, type_string_array, irrelevant, true, - isLittleEndian); + const auto characteristics = ReadElementIndexCharacteristics( + buffer, position, type_string_array, irrelevant, true, isLittleEndian); count = characteristics.EntryCount; length = characteristics.EntryLength; timeStep = characteristics.Statistics.Step; @@ -422,140 +392,130 @@ void BPSerializer::MergeSerializeIndices( default: helper::Throw( "Toolkit", "format::bp::BPSerializer", "MergeSerializeIndices", - "type " + std::to_string(dataType) + - " not supported in BP3 Metadata Merge"); + "type " + std::to_string(dataType) + " not supported in BP3 Metadata Merge"); } // end switch }; - auto lf_MergeRankSerial = - [&](const std::vector &indices, - BufferSTL &bufferSTL) { - auto &bufferOut = bufferSTL.m_Buffer; - auto &positionOut = bufferSTL.m_Position; + auto lf_MergeRankSerial = [&](const std::vector &indices, + BufferSTL &bufferSTL) { + auto &bufferOut = bufferSTL.m_Buffer; + auto &positionOut = bufferSTL.m_Position; - // extract header - ElementIndexHeader header; - // index non-empty buffer - size_t firstRank = 0; - // index positions per rank - std::vector positions(indices.size(), 0); - // merge index length - size_t headerSize = 0; + // extract header + ElementIndexHeader header; + // index non-empty buffer + size_t firstRank = 0; + // index positions per rank + std::vector positions(indices.size(), 0); + // merge index length + size_t headerSize = 0; - const bool isLittleEndian = helper::IsLittleEndian(); + const bool isLittleEndian = helper::IsLittleEndian(); - for (size_t r = 0; r < indices.size(); ++r) + for (size_t r = 0; r < indices.size(); ++r) + { + const auto &buffer = indices[r].Buffer; + if (buffer.empty()) { - const auto &buffer = indices[r].Buffer; - if (buffer.empty()) - { - continue; - } - size_t &position = positions[r]; + continue; + } + size_t &position = positions[r]; - header = - ReadElementIndexHeader(buffer, position, isLittleEndian); - firstRank = r; + header = ReadElementIndexHeader(buffer, position, isLittleEndian); + firstRank = r; - headerSize = position; - break; - } + headerSize = position; + break; + } - if (header.DataType == std::numeric_limits::max() - 1) + if (header.DataType == std::numeric_limits::max() - 1) + { + helper::Throw( + "Toolkit", "format::bp::BPSerializer", "MergeSerializeIndices", + "invalid data type for variable " + header.Name + "when writing metadata index"); + } + + // move all positions to headerSize + for (size_t r = 0; r < indices.size(); ++r) + { + const auto &buffer = indices[r].Buffer; + if (buffer.empty()) { - helper::Throw( - "Toolkit", "format::bp::BPSerializer", - "MergeSerializeIndices", - "invalid data type for variable " + header.Name + - "when writing metadata index"); + continue; } + positions[r] = headerSize; + } + + uint64_t setsCount = 0; + unsigned int currentTimeStep = 1; + bool marching = true; + + const size_t entryLengthPosition = positionOut; + positionOut += headerSize; - // move all positions to headerSize - for (size_t r = 0; r < indices.size(); ++r) + while (marching) + { + marching = false; + + for (size_t r = firstRank; r < indices.size(); ++r) { const auto &buffer = indices[r].Buffer; if (buffer.empty()) { continue; } - positions[r] = headerSize; - } - uint64_t setsCount = 0; - unsigned int currentTimeStep = 1; - bool marching = true; - - const size_t entryLengthPosition = positionOut; - positionOut += headerSize; + auto &position = positions[r]; + if (position < buffer.size()) + { + marching = true; + } + else + { + continue; + } - while (marching) - { - marching = false; + uint8_t count = 0; + uint32_t length = 0; + uint32_t timeStep = static_cast(currentTimeStep); - for (size_t r = firstRank; r < indices.size(); ++r) + while (timeStep == currentTimeStep) { - const auto &buffer = indices[r].Buffer; - if (buffer.empty()) - { - continue; - } + size_t localPosition = position; + lf_GetCharacteristics(buffer, localPosition, header.DataType, count, length, + timeStep); - auto &position = positions[r]; - if (position < buffer.size()) - { - marching = true; - } - else + if (timeStep != currentTimeStep) { - continue; + break; } - uint8_t count = 0; - uint32_t length = 0; - uint32_t timeStep = static_cast(currentTimeStep); - - while (timeStep == currentTimeStep) - { - size_t localPosition = position; - lf_GetCharacteristics(buffer, localPosition, - header.DataType, count, length, - timeStep); - - if (timeStep != currentTimeStep) - { - break; - } - - ++setsCount; + ++setsCount; - helper::CopyToBuffer(bufferOut, positionOut, - &buffer[position], length + 5); + helper::CopyToBuffer(bufferOut, positionOut, &buffer[position], length + 5); - position += length + 5; + position += length + 5; - if (position >= buffer.size()) - { - break; - } + if (position >= buffer.size()) + { + break; } } - ++currentTimeStep; } + ++currentTimeStep; + } - const uint32_t entryLength = - static_cast(positionOut - entryLengthPosition - 4); + const uint32_t entryLength = static_cast(positionOut - entryLengthPosition - 4); - size_t backPosition = entryLengthPosition; - helper::CopyToBuffer(bufferOut, backPosition, &entryLength); - helper::CopyToBuffer(bufferOut, backPosition, - &indices[firstRank].Buffer[4], - headerSize - 8 - 4); - helper::CopyToBuffer(bufferOut, backPosition, &setsCount); - }; + size_t backPosition = entryLengthPosition; + helper::CopyToBuffer(bufferOut, backPosition, &entryLength); + helper::CopyToBuffer(bufferOut, backPosition, &indices[firstRank].Buffer[4], + headerSize - 8 - 4); + helper::CopyToBuffer(bufferOut, backPosition, &setsCount); + }; - auto lf_MergeRank = [&](const std::vector &indices, - BufferSTL &bufferSTL) { + auto lf_MergeRank = [&](const std::vector &indices, BufferSTL &bufferSTL) { ElementIndexHeader header; size_t firstRank = 0; // index positions per rank @@ -583,10 +543,10 @@ void BPSerializer::MergeSerializeIndices( if (header.DataType == std::numeric_limits::max() - 1) { - helper::Throw( - "Toolkit", "format::bp::BPSerializer", "MergeSerializeIndices", - "invalid data type for variable " + header.Name + - "when writing collective metadata"); + helper::Throw("Toolkit", "format::bp::BPSerializer", + "MergeSerializeIndices", + "invalid data type for variable " + header.Name + + "when writing collective metadata"); } // move all positions to headerSize @@ -634,8 +594,7 @@ void BPSerializer::MergeSerializeIndices( while (timeStep == currentTimeStep) { size_t localPosition = position; - lf_GetCharacteristics(buffer, localPosition, - header.DataType, count, length, + lf_GetCharacteristics(buffer, localPosition, header.DataType, count, length, timeStep); if (timeStep != currentTimeStep) @@ -646,8 +605,7 @@ void BPSerializer::MergeSerializeIndices( ++setsCount; // here copy to sorted buffer - helper::InsertToBuffer(sorted, &buffer[position], - length + 5); + helper::InsertToBuffer(sorted, &buffer[position], length + 5); position += length + 5; @@ -660,8 +618,7 @@ void BPSerializer::MergeSerializeIndices( ++currentTimeStep; } - const uint32_t entryLength = - static_cast(headerSize + sorted.size() - 4); + const uint32_t entryLength = static_cast(headerSize + sorted.size() - 4); // Copy header to metadata buffer, need mutex here { std::lock_guard lock(m_Mutex); @@ -669,20 +626,17 @@ void BPSerializer::MergeSerializeIndices( auto &position = bufferSTL.m_Position; helper::CopyToBuffer(buffer, position, &entryLength); - helper::CopyToBuffer(buffer, position, - &indices[firstRank].Buffer[4], + helper::CopyToBuffer(buffer, position, &indices[firstRank].Buffer[4], headerSize - 8 - 4); helper::CopyToBuffer(buffer, position, &setsCount); - helper::CopyToBuffer(buffer, position, sorted.data(), - sorted.size()); + helper::CopyToBuffer(buffer, position, sorted.data(), sorted.size()); } }; auto lf_MergeRankRange = - [&](const std::unordered_map< - std::string, std::vector> &nameRankIndices, - const std::vector &names, const size_t start, - const size_t end, BufferSTL &bufferSTL) + [&](const std::unordered_map> &nameRankIndices, + const std::vector &names, const size_t start, const size_t end, + BufferSTL &bufferSTL) { for (auto i = start; i < end; ++i) @@ -703,10 +657,8 @@ void BPSerializer::MergeSerializeIndices( } const size_t elements = nameRankIndices.size(); - const size_t stride = - elements / m_Parameters.Threads; // elements per thread - const size_t last = - stride + elements % m_Parameters.Threads; // remainder to last + const size_t stride = elements / m_Parameters.Threads; // elements per thread + const size_t last = stride + elements % m_Parameters.Threads; // remainder to last std::vector threads; threads.reserve(m_Parameters.Threads); @@ -730,9 +682,8 @@ void BPSerializer::MergeSerializeIndices( end = start + last; } - threads.push_back( - std::thread(lf_MergeRankRange, std::ref(nameRankIndices), - std::ref(names), start, end, std::ref(bufferSTL))); + threads.push_back(std::thread(lf_MergeRankRange, std::ref(nameRankIndices), std::ref(names), + start, end, std::ref(bufferSTL))); } for (auto &thread : threads) @@ -772,12 +723,12 @@ size_t BPSerializer::GetAttributesSizeInData(core::IO &io) const noexcept if (type == DataType::Struct) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - const std::string name = attribute.first; \ - const core::Attribute &attribute = *io.InquireAttribute(name); \ - attributesSizeInData += GetAttributeSizeInData(attribute); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + const std::string name = attribute.first; \ + const core::Attribute &attribute = *io.InquireAttribute(name); \ + attributesSizeInData += GetAttributeSizeInData(attribute); \ } ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_type) #undef declare_type @@ -824,17 +775,17 @@ void BPSerializer::PutAttributes(core::IO &io) if (type == DataType::None) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - Stats stats; \ - stats.Offset = absolutePosition + m_PreDataFileLength; \ - stats.MemberID = memberID; \ - stats.Step = m_MetadataSet.TimeStep; \ - stats.FileIndex = GetFileIndex(); \ - core::Attribute &attribute = *io.InquireAttribute(name); \ - PutAttributeInData(attribute, stats); \ - PutAttributeInIndex(attribute, stats); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + Stats stats; \ + stats.Offset = absolutePosition + m_PreDataFileLength; \ + stats.MemberID = memberID; \ + stats.Step = m_MetadataSet.TimeStep; \ + stats.FileIndex = GetFileIndex(); \ + core::Attribute &attribute = *io.InquireAttribute(name); \ + PutAttributeInData(attribute, stats); \ + PutAttributeInIndex(attribute, stats); \ } ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_type) #undef declare_type @@ -843,23 +794,21 @@ void BPSerializer::PutAttributes(core::IO &io) } // complete attributes length - const uint64_t attributesLength = - static_cast(position - attributesLengthPosition); + const uint64_t attributesLength = static_cast(position - attributesLengthPosition); size_t backPosition = attributesLengthPosition; helper::CopyToBuffer(buffer, backPosition, &attributesLength); } -BPSerializer::SerialElementIndex &BPSerializer::GetSerialElementIndex( - const std::string &name, - std::unordered_map &indices, - bool &isNew) const noexcept +BPSerializer::SerialElementIndex & +BPSerializer::GetSerialElementIndex(const std::string &name, + std::unordered_map &indices, + bool &isNew) const noexcept { auto itName = indices.find(name); if (itName == indices.end()) { - indices.emplace( - name, SerialElementIndex(static_cast(indices.size()))); + indices.emplace(name, SerialElementIndex(static_cast(indices.size()))); isNew = true; return indices.at(name); } @@ -868,45 +817,43 @@ BPSerializer::SerialElementIndex &BPSerializer::GetSerialElementIndex( return itName->second; } -#define declare_template_instantiation(T) \ - template void BPSerializer::PutAttributeCharacteristicValueInIndex( \ - uint8_t &, const core::Attribute &, std::vector &) noexcept; \ - \ - template size_t BPSerializer::GetAttributeSizeInData( \ - const core::Attribute &) const noexcept; \ - \ - template void BPSerializer::PutAttributeInData(const core::Attribute &, \ - Stats &) noexcept; \ - template void BPSerializer::PutAttributeInIndex( \ - const core::Attribute &attribute, const Stats &stats) noexcept; +#define declare_template_instantiation(T) \ + template void BPSerializer::PutAttributeCharacteristicValueInIndex( \ + uint8_t &, const core::Attribute &, std::vector &) noexcept; \ + \ + template size_t BPSerializer::GetAttributeSizeInData(const core::Attribute &) \ + const noexcept; \ + \ + template void BPSerializer::PutAttributeInData(const core::Attribute &, \ + Stats &) noexcept; \ + template void BPSerializer::PutAttributeInIndex(const core::Attribute &attribute, \ + const Stats &stats) noexcept; ADIOS2_FOREACH_ATTRIBUTE_PRIMITIVE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation -#define declare_template_instantiation(T) \ - \ - template void BPSerializer::PutCharacteristicRecord( \ - const uint8_t, uint8_t &, const T &, std::vector &) noexcept; \ - \ - template void BPSerializer::PutCharacteristicRecord( \ - const uint8_t, uint8_t &, const T &, std::vector &, \ - size_t &) noexcept; \ - \ - template void BPSerializer::PutCharacteristicOperation( \ - const core::Variable &, const typename core::Variable::BPInfo &, \ - std::vector &) noexcept; \ - \ - template void BPSerializer::PutOperationPayloadInBuffer( \ - const core::Variable &, \ - const typename core::Variable::BPInfo &); +#define declare_template_instantiation(T) \ + \ + template void BPSerializer::PutCharacteristicRecord(const uint8_t, uint8_t &, const T &, \ + std::vector &) noexcept; \ + \ + template void BPSerializer::PutCharacteristicRecord(const uint8_t, uint8_t &, const T &, \ + std::vector &, size_t &) noexcept; \ + \ + template void BPSerializer::PutCharacteristicOperation( \ + const core::Variable &, const typename core::Variable::BPInfo &, \ + std::vector &) noexcept; \ + \ + template void BPSerializer::PutOperationPayloadInBuffer( \ + const core::Variable &, const typename core::Variable::BPInfo &); ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation -#define declare_template_instantiation(T) \ - template void BPSerializer::PutPayloadInBuffer( \ - const core::Variable &, const typename core::Variable::BPInfo &, \ - const bool) noexcept; +#define declare_template_instantiation(T) \ + template void BPSerializer::PutPayloadInBuffer(const core::Variable &, \ + const typename core::Variable::BPInfo &, \ + const bool) noexcept; ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation diff --git a/source/adios2/toolkit/format/bp/BPSerializer.h b/source/adios2/toolkit/format/bp/BPSerializer.h index eacbf6649b..42d4c71885 100644 --- a/source/adios2/toolkit/format/bp/BPSerializer.h +++ b/source/adios2/toolkit/format/bp/BPSerializer.h @@ -40,9 +40,9 @@ class BPSerializer : virtual public BPBase * @param transportsTypes list of transport types * @param transportsProfilers list of references to transport profilers */ - std::string GetRankProfilingJSON( - const std::vector &transportsTypes, - const std::vector &transportsProfilers) noexcept; + std::string + GetRankProfilingJSON(const std::vector &transportsTypes, + const std::vector &transportsProfilers) noexcept; /** * Forms the final profiling.json string aggregating from all ranks @@ -62,20 +62,16 @@ class BPSerializer : virtual public BPBase virtual void SerializeDataBuffer(core::IO &io) noexcept = 0; template - void - PutAttributeCharacteristicValueInIndex(uint8_t &characteristicsCounter, - const core::Attribute &attribute, - std::vector &buffer) noexcept; + void PutAttributeCharacteristicValueInIndex(uint8_t &characteristicsCounter, + const core::Attribute &attribute, + std::vector &buffer) noexcept; template - void PutCharacteristicRecord(const uint8_t characteristicID, - uint8_t &characteristicsCounter, - const T &value, - std::vector &buffer) noexcept; + void PutCharacteristicRecord(const uint8_t characteristicID, uint8_t &characteristicsCounter, + const T &value, std::vector &buffer) noexcept; template - void PutCharacteristicRecord(const uint8_t characteristicID, - uint8_t &characteristicsCounter, + void PutCharacteristicRecord(const uint8_t characteristicID, uint8_t &characteristicsCounter, const T &value, std::vector &buffer, size_t &position) noexcept; @@ -84,35 +80,28 @@ class BPSerializer : virtual public BPBase const typename core::Variable::BPInfo &blockInfo, const bool sourceRowMajor) noexcept; - void PutNameRecord(const std::string name, - std::vector &buffer) noexcept; + void PutNameRecord(const std::string name, std::vector &buffer) noexcept; void PutNameRecord(const std::string name, std::vector &buffer, size_t &position) noexcept; - void PutDimensionsRecord(const Dims &localDimensions, - const Dims &globalDimensions, const Dims &offsets, - std::vector &buffer) noexcept; + void PutDimensionsRecord(const Dims &localDimensions, const Dims &globalDimensions, + const Dims &offsets, std::vector &buffer) noexcept; - void PutDimensionsRecord(const Dims &localDimensions, - const Dims &globalDimensions, const Dims &offsets, - std::vector &buffer, size_t &position, + void PutDimensionsRecord(const Dims &localDimensions, const Dims &globalDimensions, + const Dims &offsets, std::vector &buffer, size_t &position, const bool isCharacteristic = false) noexcept; - void PutMinifooter(const uint64_t pgIndexStart, - const uint64_t variablesIndexStart, - const uint64_t attributesIndexStart, - std::vector &buffer, size_t &position, - const bool addSubfiles = false); + void PutMinifooter(const uint64_t pgIndexStart, const uint64_t variablesIndexStart, + const uint64_t attributesIndexStart, std::vector &buffer, + size_t &position, const bool addSubfiles = false); void MergeSerializeIndices( - const std::unordered_map> - &nameRankIndices, + const std::unordered_map> &nameRankIndices, helper::Comm const &comm, BufferSTL &bufferSTL); template - void UpdateIndexOffsetsCharacteristics(size_t ¤tPosition, - const DataTypes dataType, + void UpdateIndexOffsetsCharacteristics(size_t ¤tPosition, const DataTypes dataType, std::vector &buffer); uint32_t GetFileIndex() const noexcept; @@ -120,25 +109,22 @@ class BPSerializer : virtual public BPBase size_t GetAttributesSizeInData(core::IO &io) const noexcept; template - size_t - GetAttributeSizeInData(const core::Attribute &attribute) const noexcept; + size_t GetAttributeSizeInData(const core::Attribute &attribute) const noexcept; void PutAttributes(core::IO &io); - SerialElementIndex &GetSerialElementIndex( - const std::string &name, - std::unordered_map &indices, - bool &isNew) const noexcept; + SerialElementIndex & + GetSerialElementIndex(const std::string &name, + std::unordered_map &indices, + bool &isNew) const noexcept; template - void PutAttributeInData(const core::Attribute &attribute, - Stats &stats) noexcept; + void PutAttributeInData(const core::Attribute &attribute, Stats &stats) noexcept; template - void PutAttributeInIndex(const core::Attribute &attribute, - const Stats &stats) noexcept; + void PutAttributeInIndex(const core::Attribute &attribute, const Stats &stats) noexcept; -#define declare_template_instantiation(T) \ - virtual void DoPutAttributeInData(const core::Attribute &attribute, \ +#define declare_template_instantiation(T) \ + virtual void DoPutAttributeInData(const core::Attribute &attribute, \ Stats &stats) noexcept = 0; ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_template_instantiation) @@ -146,15 +132,13 @@ class BPSerializer : virtual public BPBase // Operations related functions template - void PutCharacteristicOperation( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - std::vector &buffer) noexcept; + void PutCharacteristicOperation(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + std::vector &buffer) noexcept; template - void PutOperationPayloadInBuffer( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo); + void PutOperationPayloadInBuffer(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo); private: size_t m_OutputSizeMetadataPosition; diff --git a/source/adios2/toolkit/format/bp/BPSerializer.tcc b/source/adios2/toolkit/format/bp/BPSerializer.tcc index 63bfb3ad55..205ce3cff1 100644 --- a/source/adios2/toolkit/format/bp/BPSerializer.tcc +++ b/source/adios2/toolkit/format/bp/BPSerializer.tcc @@ -19,9 +19,10 @@ namespace format { template -inline void BPSerializer::PutAttributeCharacteristicValueInIndex( - uint8_t &characteristicsCounter, const core::Attribute &attribute, - std::vector &buffer) noexcept +inline void +BPSerializer::PutAttributeCharacteristicValueInIndex(uint8_t &characteristicsCounter, + const core::Attribute &attribute, + std::vector &buffer) noexcept { const uint8_t characteristicID = CharacteristicID::characteristic_value; @@ -33,16 +34,14 @@ inline void BPSerializer::PutAttributeCharacteristicValueInIndex( } else // array { - helper::InsertToBuffer(buffer, attribute.m_DataArray.data(), - attribute.m_Elements); + helper::InsertToBuffer(buffer, attribute.m_DataArray.data(), attribute.m_Elements); } ++characteristicsCounter; } template void BPSerializer::PutCharacteristicRecord(const uint8_t characteristicID, - uint8_t &characteristicsCounter, - const T &value, + uint8_t &characteristicsCounter, const T &value, std::vector &buffer) noexcept { const uint8_t id = characteristicID; @@ -53,10 +52,8 @@ void BPSerializer::PutCharacteristicRecord(const uint8_t characteristicID, template void BPSerializer::PutCharacteristicRecord(const uint8_t characteristicID, - uint8_t &characteristicsCounter, - const T &value, - std::vector &buffer, - size_t &position) noexcept + uint8_t &characteristicsCounter, const T &value, + std::vector &buffer, size_t &position) noexcept { const uint8_t id = characteristicID; helper::CopyToBuffer(buffer, position, &id); @@ -65,10 +62,9 @@ void BPSerializer::PutCharacteristicRecord(const uint8_t characteristicID, } template -inline void BPSerializer::PutPayloadInBuffer( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const bool sourceRowMajor) noexcept +inline void BPSerializer::PutPayloadInBuffer(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const bool sourceRowMajor) noexcept { const size_t blockSize = helper::GetTotalSize(blockInfo.Count); m_Profiler.Start("memcpy"); @@ -76,9 +72,8 @@ inline void BPSerializer::PutPayloadInBuffer( #ifdef ADIOS2_HAVE_GPU_SUPPORT if (blockInfo.MemSpace == MemorySpace::GPU) { - helper::CopyFromGPUToBuffer(m_Data.m_Buffer, m_Data.m_Position, - blockInfo.Data, blockInfo.MemSpace, - blockSize); + helper::CopyFromGPUToBuffer(m_Data.m_Buffer, m_Data.m_Position, blockInfo.Data, + blockInfo.MemSpace, blockSize); m_Profiler.Stop("memcpy"); m_Data.m_AbsolutePosition += blockSize * sizeof(T); return; @@ -87,17 +82,15 @@ inline void BPSerializer::PutPayloadInBuffer( if (!blockInfo.MemoryStart.empty()) { - helper::CopyMemoryBlock( - reinterpret_cast(m_Data.m_Buffer.data() + m_Data.m_Position), - blockInfo.Start, blockInfo.Count, sourceRowMajor, blockInfo.Data, - blockInfo.Start, blockInfo.Count, sourceRowMajor, false, Dims(), - Dims(), blockInfo.MemoryStart, blockInfo.MemoryCount); + helper::CopyMemoryBlock(reinterpret_cast(m_Data.m_Buffer.data() + m_Data.m_Position), + blockInfo.Start, blockInfo.Count, sourceRowMajor, blockInfo.Data, + blockInfo.Start, blockInfo.Count, sourceRowMajor, false, Dims(), + Dims(), blockInfo.MemoryStart, blockInfo.MemoryCount); m_Data.m_Position += blockSize * sizeof(T); } else { - helper::CopyToBufferThreads(m_Data.m_Buffer, m_Data.m_Position, - blockInfo.Data, blockSize, + helper::CopyToBufferThreads(m_Data.m_Buffer, m_Data.m_Position, blockInfo.Data, blockSize, m_Parameters.Threads); } m_Profiler.Stop("memcpy"); @@ -117,15 +110,13 @@ void BPSerializer::UpdateIndexOffsetsCharacteristics(size_t ¤tPosition, const uint32_t characteristicsLength = helper::ReadValue(buffer, currentPosition, isLittleEndian); - const size_t endPosition = - currentPosition + static_cast(characteristicsLength); + const size_t endPosition = currentPosition + static_cast(characteristicsLength); size_t dimensionsSize = 0; // get it from dimensions characteristics while (currentPosition < endPosition) { - const uint8_t id = - helper::ReadValue(buffer, currentPosition, isLittleEndian); + const uint8_t id = helper::ReadValue(buffer, currentPosition, isLittleEndian); switch (id) { @@ -145,8 +136,7 @@ void BPSerializer::UpdateIndexOffsetsCharacteristics(size_t ¤tPosition, // first get the length of the string const size_t length = static_cast( - helper::ReadValue(buffer, currentPosition, - isLittleEndian)); + helper::ReadValue(buffer, currentPosition, isLittleEndian)); currentPosition += length; } @@ -169,69 +159,61 @@ void BPSerializer::UpdateIndexOffsetsCharacteristics(size_t ¤tPosition, } case (characteristic_minmax): { // first get the number of subblocks - const uint16_t M = - helper::ReadValue(buffer, currentPosition); + const uint16_t M = helper::ReadValue(buffer, currentPosition); currentPosition += 2 * sizeof(T); // block min/max if (M > 1) { currentPosition += 1 + 8; // method (byte), blockSize (uint64_t) - currentPosition += - dimensionsSize * sizeof(uint16_t); // N-dim division - currentPosition += 2 * M * sizeof(T); // M * min/max + currentPosition += dimensionsSize * sizeof(uint16_t); // N-dim division + currentPosition += 2 * M * sizeof(T); // M * min/max } break; } case (characteristic_offset): { - const uint64_t currentOffset = helper::ReadValue( - buffer, currentPosition, isLittleEndian); + const uint64_t currentOffset = + helper::ReadValue(buffer, currentPosition, isLittleEndian); const uint64_t updatedOffset = - currentOffset + - static_cast(m_Data.m_AbsolutePosition); + currentOffset + static_cast(m_Data.m_AbsolutePosition); currentPosition -= sizeof(uint64_t); helper::CopyToBuffer(buffer, currentPosition, &updatedOffset); break; } case (characteristic_payload_offset): { - const uint64_t currentPayloadOffset = helper::ReadValue( - buffer, currentPosition, isLittleEndian); + const uint64_t currentPayloadOffset = + helper::ReadValue(buffer, currentPosition, isLittleEndian); const uint64_t updatedPayloadOffset = - currentPayloadOffset + - static_cast(m_Data.m_AbsolutePosition); + currentPayloadOffset + static_cast(m_Data.m_AbsolutePosition); currentPosition -= sizeof(uint64_t); - helper::CopyToBuffer(buffer, currentPosition, - &updatedPayloadOffset); + helper::CopyToBuffer(buffer, currentPosition, &updatedPayloadOffset); break; } case (characteristic_dimensions): { - dimensionsSize = static_cast(helper::ReadValue( - buffer, currentPosition, isLittleEndian)); + dimensionsSize = static_cast( + helper::ReadValue(buffer, currentPosition, isLittleEndian)); - currentPosition += - 3 * sizeof(uint64_t) * dimensionsSize + 2; // 2 is for length + currentPosition += 3 * sizeof(uint64_t) * dimensionsSize + 2; // 2 is for length break; } case (characteristic_transform_type): { - const size_t typeLength = - static_cast(helper::ReadValue( - buffer, currentPosition, isLittleEndian)); + const size_t typeLength = static_cast( + helper::ReadValue(buffer, currentPosition, isLittleEndian)); // skip over operator name (transform type) string currentPosition += typeLength; // skip over pre-data type (1) and dimensionsSize (1) currentPosition += 2; - const uint16_t dimensionsLength = helper::ReadValue( - buffer, currentPosition, isLittleEndian); + const uint16_t dimensionsLength = + helper::ReadValue(buffer, currentPosition, isLittleEndian); // skip over dimensions currentPosition += dimensionsLength; - const size_t metadataLength = - static_cast(helper::ReadValue( - buffer, currentPosition, isLittleEndian)); + const size_t metadataLength = static_cast( + helper::ReadValue(buffer, currentPosition, isLittleEndian)); // skip over operator metadata currentPosition += metadataLength; @@ -239,10 +221,8 @@ void BPSerializer::UpdateIndexOffsetsCharacteristics(size_t ¤tPosition, } default: { helper::Throw( - "Toolkit", "format::bp::BPSerializer", - "UpdateIndexOffsetsCharacteristics", - "characteristic ID " + std::to_string(id) + - " not supported when updating offsets"); + "Toolkit", "format::bp::BPSerializer", "UpdateIndexOffsetsCharacteristics", + "characteristic ID " + std::to_string(id) + " not supported when updating offsets"); } } // end id switch @@ -250,8 +230,8 @@ void BPSerializer::UpdateIndexOffsetsCharacteristics(size_t ¤tPosition, } template -inline size_t BPSerializer::GetAttributeSizeInData( - const core::Attribute &attribute) const noexcept +inline size_t +BPSerializer::GetAttributeSizeInData(const core::Attribute &attribute) const noexcept { size_t size = 14 + attribute.m_Name.size() + 10; size += 4 + sizeof(T) * attribute.m_Elements; @@ -259,8 +239,7 @@ inline size_t BPSerializer::GetAttributeSizeInData( } template -void BPSerializer::PutAttributeInData(const core::Attribute &attribute, - Stats &stats) noexcept +void BPSerializer::PutAttributeInData(const core::Attribute &attribute, Stats &stats) noexcept { DoPutAttributeInData(attribute, stats); } @@ -301,11 +280,10 @@ void BPSerializer::PutAttributeInIndex(const core::Attribute &attribute, uint8_t characteristicsCounter = 0; // DIMENSIONS - PutCharacteristicRecord(characteristic_time_index, characteristicsCounter, - stats.Step, buffer); + PutCharacteristicRecord(characteristic_time_index, characteristicsCounter, stats.Step, buffer); - PutCharacteristicRecord(characteristic_file_index, characteristicsCounter, - stats.FileIndex, buffer); + PutCharacteristicRecord(characteristic_file_index, characteristicsCounter, stats.FileIndex, + buffer); uint8_t characteristicID = characteristic_dimensions; helper::InsertToBuffer(buffer, &characteristicID); @@ -317,15 +295,12 @@ void BPSerializer::PutAttributeInIndex(const core::Attribute &attribute, ++characteristicsCounter; // VALUE - PutAttributeCharacteristicValueInIndex(characteristicsCounter, attribute, - buffer); + PutAttributeCharacteristicValueInIndex(characteristicsCounter, attribute, buffer); - PutCharacteristicRecord(characteristic_offset, characteristicsCounter, - stats.Offset, buffer); + PutCharacteristicRecord(characteristic_offset, characteristicsCounter, stats.Offset, buffer); - PutCharacteristicRecord(characteristic_payload_offset, - characteristicsCounter, stats.PayloadOffset, - buffer); + PutCharacteristicRecord(characteristic_payload_offset, characteristicsCounter, + stats.PayloadOffset, buffer); // END OF CHARACTERISTICS // Back to characteristics count and length @@ -334,16 +309,15 @@ void BPSerializer::PutAttributeInIndex(const core::Attribute &attribute, &characteristicsCounter); // count (1) // remove its own length (4) + characteristic counter (1) - const uint32_t characteristicsLength = static_cast( - buffer.size() - characteristicsCountPosition - 4 - 1); + const uint32_t characteristicsLength = + static_cast(buffer.size() - characteristicsCountPosition - 4 - 1); helper::CopyToBuffer(buffer, backPosition, &characteristicsLength); // length // Remember this attribute and its serialized piece // should not affect BP3 as it's recalculated - const uint32_t indexLength = - static_cast(buffer.size() - indexLengthPosition - 4); + const uint32_t indexLength = static_cast(buffer.size() - indexLengthPosition - 4); helper::CopyToBuffer(buffer, indexLengthPosition, &indexLength); m_MetadataSet.AttributesIndices.emplace(attribute.m_Name, index); @@ -352,10 +326,9 @@ void BPSerializer::PutAttributeInIndex(const core::Attribute &attribute, // operations related functions template -void BPSerializer::PutCharacteristicOperation( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - std::vector &buffer) noexcept +void BPSerializer::PutCharacteristicOperation(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + std::vector &buffer) noexcept { const std::string type = blockInfo.Operations[0]->m_TypeString; const uint8_t typeLength = static_cast(type.size()); @@ -370,12 +343,11 @@ void BPSerializer::PutCharacteristicOperation( helper::InsertToBuffer(buffer, &dimensions); // count const uint16_t dimensionsLength = static_cast(24 * dimensions); helper::InsertToBuffer(buffer, &dimensionsLength); // length - PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, - buffer); + PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, buffer); // here put the metadata info depending on operation - const uint64_t inputSize = static_cast( - helper::GetTotalSize(blockInfo.Count) * sizeof(T)); + const uint64_t inputSize = + static_cast(helper::GetTotalSize(blockInfo.Count) * sizeof(T)); // fixed size only stores inputSize 8-bytes and outputSize 8-bytes constexpr uint16_t metadataSize = 16; @@ -389,28 +361,26 @@ void BPSerializer::PutCharacteristicOperation( } template -void BPSerializer::PutOperationPayloadInBuffer( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo) +void BPSerializer::PutOperationPayloadInBuffer(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo) { size_t outputSize = blockInfo.Operations[0]->Operate( - reinterpret_cast(blockInfo.Data), blockInfo.Start, - blockInfo.Count, variable.m_Type, + reinterpret_cast(blockInfo.Data), blockInfo.Start, blockInfo.Count, variable.m_Type, m_Data.m_Buffer.data() + m_Data.m_Position); if (outputSize == 0) // the operator was not applied outputSize = helper::CopyMemoryWithOpHeader( - reinterpret_cast(blockInfo.Data), blockInfo.Count, - variable.m_Type, m_Data.m_Buffer.data() + m_Data.m_Position, - blockInfo.Operations[0]->GetHeaderSize(), blockInfo.MemSpace); + reinterpret_cast(blockInfo.Data), blockInfo.Count, variable.m_Type, + m_Data.m_Buffer.data() + m_Data.m_Position, blockInfo.Operations[0]->GetHeaderSize(), + blockInfo.MemSpace); m_Data.m_Position += outputSize; m_Data.m_AbsolutePosition += outputSize; // update metadata bool isFound = false; - SerialElementIndex &variableIndex = GetSerialElementIndex( - variable.m_Name, m_MetadataSet.VarsIndices, isFound); + SerialElementIndex &variableIndex = + GetSerialElementIndex(variable.m_Name, m_MetadataSet.VarsIndices, isFound); size_t backPosition = m_OutputSizeMetadataPosition; diff --git a/source/adios2/toolkit/format/bp/bp3/BP3Base.cpp b/source/adios2/toolkit/format/bp/bp3/BP3Base.cpp index 8d7547c395..4a56302ee7 100644 --- a/source/adios2/toolkit/format/bp/bp3/BP3Base.cpp +++ b/source/adios2/toolkit/format/bp/bp3/BP3Base.cpp @@ -30,15 +30,14 @@ BP3Base::GetBPBaseNames(const std::vector &names) const noexcept for (const std::string &name : names) { - const std::string bpBaseName = - helper::AddExtension(name, ".bp") + ".dir"; + const std::string bpBaseName = helper::AddExtension(name, ".bp") + ".dir"; bpBaseNames.push_back(bpBaseName); } return bpBaseNames; } -std::vector BP3Base::GetBPMetadataFileNames( - const std::vector &names) const noexcept +std::vector +BP3Base::GetBPMetadataFileNames(const std::vector &names) const noexcept { std::vector metadataFileNames; metadataFileNames.reserve(names.size()); @@ -49,30 +48,26 @@ std::vector BP3Base::GetBPMetadataFileNames( return metadataFileNames; } -std::string -BP3Base::GetBPMetadataFileName(const std::string &name) const noexcept +std::string BP3Base::GetBPMetadataFileName(const std::string &name) const noexcept { return helper::AddExtension(name, ".bp"); } -std::vector BP3Base::GetBPSubStreamNames( - const std::vector &names) const noexcept +std::vector +BP3Base::GetBPSubStreamNames(const std::vector &names) const noexcept { std::vector bpNames; bpNames.reserve(names.size()); for (const auto &name : names) { - bpNames.push_back( - GetBPSubStreamName(name, static_cast(m_RankMPI))); + bpNames.push_back(GetBPSubStreamName(name, static_cast(m_RankMPI))); } return bpNames; } -std::string BP3Base::GetBPSubFileName(const std::string &name, - const size_t subFileIndex, - const bool hasSubFiles, - const bool isReader) const noexcept +std::string BP3Base::GetBPSubFileName(const std::string &name, const size_t subFileIndex, + const bool hasSubFiles, const bool isReader) const noexcept { return GetBPSubStreamName(name, subFileIndex, hasSubFiles, isReader); } @@ -116,30 +111,24 @@ size_t BP3Base::GetBPIndexSizeInData(const std::string &variableName, // PROTECTED BP3Base::ElementIndexHeader -BP3Base::ReadElementIndexHeader(const std::vector &buffer, - size_t &position, +BP3Base::ReadElementIndexHeader(const std::vector &buffer, size_t &position, const bool isLittleEndian) const noexcept { ElementIndexHeader header; - header.Length = - helper::ReadValue(buffer, position, isLittleEndian); - header.MemberID = - helper::ReadValue(buffer, position, isLittleEndian); + header.Length = helper::ReadValue(buffer, position, isLittleEndian); + header.MemberID = helper::ReadValue(buffer, position, isLittleEndian); header.GroupName = ReadBPString(buffer, position, isLittleEndian); header.Name = ReadBPString(buffer, position, isLittleEndian); header.Path = ReadBPString(buffer, position, isLittleEndian); - header.DataType = - helper::ReadValue(buffer, position, isLittleEndian); - header.CharacteristicsSetsCount = - helper::ReadValue(buffer, position, isLittleEndian); + header.DataType = helper::ReadValue(buffer, position, isLittleEndian); + header.CharacteristicsSetsCount = helper::ReadValue(buffer, position, isLittleEndian); return header; } // PRIVATE -std::string BP3Base::GetBPSubStreamName(const std::string &name, - const size_t id, const bool hasSubFiles, - const bool isReader) const noexcept +std::string BP3Base::GetBPSubStreamName(const std::string &name, const size_t id, + const bool hasSubFiles, const bool isReader) const noexcept { if (!hasSubFiles) { @@ -157,13 +146,12 @@ std::string BP3Base::GetBPSubStreamName(const std::string &name, bpRoot = bpName.substr(lastPathSeparator); } - const size_t index = isReader ? id - : m_Aggregator.m_IsActive - ? m_Aggregator.m_SubStreamIndex - : id; + const size_t index = isReader ? id + : m_Aggregator.m_IsActive ? m_Aggregator.m_SubStreamIndex + : id; - const std::string bpRankName(bpName + ".dir" + PathSeparator + bpRoot + - "." + std::to_string(index)); + const std::string bpRankName(bpName + ".dir" + PathSeparator + bpRoot + "." + + std::to_string(index)); return bpRankName; } diff --git a/source/adios2/toolkit/format/bp/bp3/BP3Base.h b/source/adios2/toolkit/format/bp/bp3/BP3Base.h index ce2d004cff..4294ea5c3e 100644 --- a/source/adios2/toolkit/format/bp/bp3/BP3Base.h +++ b/source/adios2/toolkit/format/bp/bp3/BP3Base.h @@ -59,8 +59,7 @@ class BP3Base : virtual public BPBase * @param names * @return vector of base (name.bp) names */ - std::vector - GetBPBaseNames(const std::vector &names) const noexcept; + std::vector GetBPBaseNames(const std::vector &names) const noexcept; /** * Get BP substream names from base names: @@ -69,16 +68,15 @@ class BP3Base : virtual public BPBase * @param baseNames inputs * @return vector of BP substream names for transports */ - std::vector GetBPSubStreamNames( - const std::vector &baseNames) const noexcept; + std::vector + GetBPSubStreamNames(const std::vector &baseNames) const noexcept; - std::vector GetBPMetadataFileNames( - const std::vector &names) const noexcept; + std::vector + GetBPMetadataFileNames(const std::vector &names) const noexcept; std::string GetBPMetadataFileName(const std::string &name) const noexcept; - std::string GetBPSubFileName(const std::string &name, - const size_t subFileIndex, + std::string GetBPSubFileName(const std::string &name, const size_t subFileIndex, const bool hasSubFiles = true, const bool isReader = false) const noexcept; @@ -88,13 +86,12 @@ class BP3Base : virtual public BPBase * @param variableName input * @param count input variable local dimensions */ - size_t GetBPIndexSizeInData(const std::string &variableName, - const Dims &count) const noexcept; + size_t GetBPIndexSizeInData(const std::string &variableName, const Dims &count) const noexcept; protected: - ElementIndexHeader ReadElementIndexHeader( - const std::vector &buffer, size_t &position, - const bool isLittleEndian = true) const noexcept final; + ElementIndexHeader + ReadElementIndexHeader(const std::vector &buffer, size_t &position, + const bool isLittleEndian = true) const noexcept final; private: std::string GetBPSubStreamName(const std::string &name, const size_t id, diff --git a/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.cpp b/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.cpp index ab43ceac6a..f4574129f3 100644 --- a/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.cpp +++ b/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.cpp @@ -33,15 +33,12 @@ BP3Deserializer::BP3Deserializer(helper::Comm const &comm) { } -void BP3Deserializer::ParseMetadata(const BufferSTL &bufferSTL, - core::Engine &engine) +void BP3Deserializer::ParseMetadata(const BufferSTL &bufferSTL, core::Engine &engine) { ParseMinifooter(bufferSTL); ParsePGIndex(bufferSTL, - (engine.m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) - ? "C++" - : "Fortran"); + (engine.m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" : "Fortran"); ParseVariablesIndex(bufferSTL, engine); ParseAttributesIndex(bufferSTL, engine); } @@ -50,8 +47,7 @@ const helper::BlockOperationInfo &BP3Deserializer::InitPostOperatorBlockData( const std::vector &blockOperationsInfo) const { size_t index = 0; - for (const helper::BlockOperationInfo &blockOperationInfo : - blockOperationsInfo) + for (const helper::BlockOperationInfo &blockOperationInfo : blockOperationsInfo) { const std::string type = blockOperationInfo.Info.at("Type"); if (m_TransformTypes.count(type) == 1) @@ -78,31 +74,30 @@ void BP3Deserializer::ParseMinifooter(const BufferSTL &bufferSTL) const uint8_t endianness = helper::ReadValue(buffer, position); if (endianness > 1) { - std::string err = - "The endianness flag in the .bp file was neither zero nor one (" + - std::to_string(endianness) + - "), this indicates the the file is either corrupted, or not a .bp " - "file."; - helper::Throw( - "Toolkit", "format::bp::BP3Deserializer", "ParseMinifooter", err); + std::string err = "The endianness flag in the .bp file was neither zero nor one (" + + std::to_string(endianness) + + "), this indicates the the file is either corrupted, or not a .bp " + "file."; + helper::Throw("Toolkit", "format::bp::BP3Deserializer", + "ParseMinifooter", err); } m_Minifooter.IsLittleEndian = (endianness == 0) ? true : false; #ifndef ADIOS2_HAVE_ENDIAN_REVERSE if (helper::IsLittleEndian() != m_Minifooter.IsLittleEndian) { - helper::Throw( - "Toolkit", "format::bp::BP3Deserializer", "ParseMinifooter", - "reader found BigEndian bp file, " - "this version of ADIOS2 wasn't compiled " - "with the cmake flag -DADIOS2_USE_Endian_Reverse=ON " - "explicitly, in call to Open"); + helper::Throw("Toolkit", "format::bp::BP3Deserializer", + "ParseMinifooter", + "reader found BigEndian bp file, " + "this version of ADIOS2 wasn't compiled " + "with the cmake flag -DADIOS2_USE_Endian_Reverse=ON " + "explicitly, in call to Open"); } #endif position += 1; - const int8_t fileType = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const int8_t fileType = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); if (fileType == 3) { m_Minifooter.HasSubFiles = true; @@ -112,15 +107,15 @@ void BP3Deserializer::ParseMinifooter(const BufferSTL &bufferSTL) m_Minifooter.HasSubFiles = false; } - m_Minifooter.Version = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + m_Minifooter.Version = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); if (m_Minifooter.Version < 3) { - helper::Throw( - "Toolkit", "format::bp::BP3Deserializer", "ParseMinifooter", - "ADIOS2 only supports bp format " - "version 3 and above, found " + - std::to_string(m_Minifooter.Version) + " version"); + helper::Throw("Toolkit", "format::bp::BP3Deserializer", + "ParseMinifooter", + "ADIOS2 only supports bp format " + "version 3 and above, found " + + std::to_string(m_Minifooter.Version) + " version"); } position = bufferSize - m_MetadataSet.MiniFooterSize; @@ -129,40 +124,33 @@ void BP3Deserializer::ParseMinifooter(const BufferSTL &bufferSTL) m_Minifooter.VersionTag.assign(&buffer[position], 28); position += 24; m_Minifooter.ADIOSVersionMajor = - helper::ReadValue(buffer, position, - m_Minifooter.IsLittleEndian) - - (uint8_t)'0'; + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian) - (uint8_t)'0'; m_Minifooter.ADIOSVersionMinor = - helper::ReadValue(buffer, position, - m_Minifooter.IsLittleEndian) - - (uint8_t)'0'; + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian) - (uint8_t)'0'; m_Minifooter.ADIOSVersionPatch = - helper::ReadValue(buffer, position, - m_Minifooter.IsLittleEndian) - - (uint8_t)'0'; + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian) - (uint8_t)'0'; m_Minifooter.ADIOSVersion = m_Minifooter.ADIOSVersionMajor * 1000000 + m_Minifooter.ADIOSVersionMinor * 1000 + m_Minifooter.ADIOSVersionPatch; ++position; ; - m_Minifooter.PGIndexStart = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); - m_Minifooter.VarsIndexStart = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); - m_Minifooter.AttributesIndexStart = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + m_Minifooter.PGIndexStart = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); + m_Minifooter.VarsIndexStart = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); + m_Minifooter.AttributesIndexStart = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); } -void BP3Deserializer::ParsePGIndex(const BufferSTL &bufferSTL, - const std::string hostLanguage) +void BP3Deserializer::ParsePGIndex(const BufferSTL &bufferSTL, const std::string hostLanguage) { const auto &buffer = bufferSTL.m_Buffer; // always start from zero size_t position = 0; - m_MetadataSet.DataPGCount = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + m_MetadataSet.DataPGCount = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); size_t localPosition = 0; @@ -175,13 +163,12 @@ void BP3Deserializer::ParsePGIndex(const BufferSTL &bufferSTL, * here the more reliable limit: the start of variable index - start of * PG index (- the already parsed 16 bytes) */ - const size_t pgIndexLength = - m_Minifooter.VarsIndexStart - m_Minifooter.PGIndexStart - 16; + const size_t pgIndexLength = m_Minifooter.VarsIndexStart - m_Minifooter.PGIndexStart - 16; while (localPosition < pgIndexLength) { - ProcessGroupIndex index = ReadProcessGroupIndexHeader( - buffer, position, m_Minifooter.IsLittleEndian); + ProcessGroupIndex index = + ReadProcessGroupIndexHeader(buffer, position, m_Minifooter.IsLittleEndian); if (index.IsColumnMajor == 'y') { m_IsRowMajor = false; @@ -204,22 +191,20 @@ void BP3Deserializer::ParsePGIndex(const BufferSTL &bufferSTL, } } -void BP3Deserializer::ParseVariablesIndex(const BufferSTL &bufferSTL, - core::Engine &engine) +void BP3Deserializer::ParseVariablesIndex(const BufferSTL &bufferSTL, core::Engine &engine) { - auto lf_ReadElementIndex = [&](core::Engine &engine, - const std::vector &buffer, + auto lf_ReadElementIndex = [&](core::Engine &engine, const std::vector &buffer, size_t position) { - const ElementIndexHeader header = ReadElementIndexHeader( - buffer, position, m_Minifooter.IsLittleEndian); + const ElementIndexHeader header = + ReadElementIndexHeader(buffer, position, m_Minifooter.IsLittleEndian); switch (header.DataType) { -#define make_case(T) \ - case (TypeTraits::type_enum): { \ - DefineVariableInEngineIO(header, engine, buffer, position); \ - break; \ +#define make_case(T) \ + case (TypeTraits::type_enum): { \ + DefineVariableInEngineIO(header, engine, buffer, position); \ + break; \ } ADIOS2_FOREACH_STDTYPE_1ARG(make_case) #undef make_case @@ -228,9 +213,9 @@ void BP3Deserializer::ParseVariablesIndex(const BufferSTL &bufferSTL, }; const auto &buffer = bufferSTL.m_Buffer; - size_t position = helper::GetDistance( - m_Minifooter.VarsIndexStart, m_Minifooter.PGIndexStart, - " BP3 variable index start < pg index start, in call to Open"); + size_t position = + helper::GetDistance(m_Minifooter.VarsIndexStart, m_Minifooter.PGIndexStart, + " BP3 variable index start < pg index start, in call to Open"); helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); @@ -252,9 +237,8 @@ void BP3Deserializer::ParseVariablesIndex(const BufferSTL &bufferSTL, { lf_ReadElementIndex(engine, buffer, position); - const size_t elementIndexSize = - static_cast(helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian)); + const size_t elementIndexSize = static_cast( + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian)); position += elementIndexSize; localPosition = position - startPosition; } @@ -273,9 +257,8 @@ void BP3Deserializer::ParseVariablesIndex(const BufferSTL &bufferSTL, for (unsigned int t = 0; t < m_Parameters.Threads; ++t) { asyncPositions[t] = position; - const size_t elementIndexSize = - static_cast(helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian)); + const size_t elementIndexSize = static_cast( + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian)); position += elementIndexSize; localPosition = position - startPosition; @@ -286,9 +269,8 @@ void BP3Deserializer::ParseVariablesIndex(const BufferSTL &bufferSTL, if (localPosition <= varIndexLength) { - asyncs[t] = std::async(std::launch::async, lf_ReadElementIndex, - std::ref(engine), std::ref(buffer), - asyncPositions[t]); + asyncs[t] = std::async(std::launch::async, lf_ReadElementIndex, std::ref(engine), + std::ref(buffer), asyncPositions[t]); } } launched = true; @@ -303,28 +285,25 @@ void BP3Deserializer::ParseVariablesIndex(const BufferSTL &bufferSTL, } } -void BP3Deserializer::ParseAttributesIndex(const BufferSTL &bufferSTL, - core::Engine &engine) +void BP3Deserializer::ParseAttributesIndex(const BufferSTL &bufferSTL, core::Engine &engine) { - auto lf_ReadElementIndex = [&](core::Engine &engine, - const std::vector &buffer, + auto lf_ReadElementIndex = [&](core::Engine &engine, const std::vector &buffer, size_t position) { - const ElementIndexHeader header = ReadElementIndexHeader( - buffer, position, m_Minifooter.IsLittleEndian); + const ElementIndexHeader header = + ReadElementIndexHeader(buffer, position, m_Minifooter.IsLittleEndian); switch (header.DataType) { -#define make_case(T) \ - case (TypeTraits::type_enum): { \ - DefineAttributeInEngineIO(header, engine, buffer, position); \ - break; \ +#define make_case(T) \ + case (TypeTraits::type_enum): { \ + DefineAttributeInEngineIO(header, engine, buffer, position); \ + break; \ } ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(make_case) #undef make_case case (type_string_array): { - DefineAttributeInEngineIO(header, engine, buffer, - position); + DefineAttributeInEngineIO(header, engine, buffer, position); break; } @@ -333,9 +312,9 @@ void BP3Deserializer::ParseAttributesIndex(const BufferSTL &bufferSTL, const auto &buffer = bufferSTL.m_Buffer; - size_t position = helper::GetDistance( - m_Minifooter.AttributesIndexStart, m_Minifooter.PGIndexStart, - " BP3 attributes index start < pg index start, in call to Open"); + size_t position = + helper::GetDistance(m_Minifooter.AttributesIndexStart, m_Minifooter.PGIndexStart, + " BP3 attributes index start < pg index start, in call to Open"); helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); @@ -348,16 +327,14 @@ void BP3Deserializer::ParseAttributesIndex(const BufferSTL &bufferSTL, * here the more reliable limit: the end of index buffer - the size of the * minifooter */ - const size_t attrIndexLength = - buffer.size() - m_MetadataSet.MiniFooterSize - startPosition; + const size_t attrIndexLength = buffer.size() - m_MetadataSet.MiniFooterSize - startPosition; // Read sequentially while (localPosition < attrIndexLength) { lf_ReadElementIndex(engine, buffer, position); - const size_t elementIndexSize = - static_cast(helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian)); + const size_t elementIndexSize = static_cast( + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian)); position += elementIndexSize; localPosition = position - startPosition; } @@ -379,11 +356,10 @@ BP3Deserializer::PerformGetsVariablesSubFileInfo(core::IO &io) if (type == DataType::Struct) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - subFileInfoPair.second = \ - GetSubFileInfo(*io.InquireVariable(variableName)); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + subFileInfoPair.second = GetSubFileInfo(*io.InquireVariable(variableName)); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -393,80 +369,72 @@ BP3Deserializer::PerformGetsVariablesSubFileInfo(core::IO &io) void BP3Deserializer::ClipMemory(const std::string &variableName, core::IO &io, const std::vector &contiguousMemory, - const Box &blockBox, - const Box &intersectionBox) const + const Box &blockBox, const Box &intersectionBox) const { const DataType type(io.InquireVariableType(variableName)); if (type == DataType::Struct) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - core::Variable *variable = io.InquireVariable(variableName); \ - if (variable != nullptr) \ - { \ - helper::ClipContiguousMemory(variable->m_Data, variable->m_Start, \ - variable->m_Count, contiguousMemory, \ - blockBox, intersectionBox, \ - m_IsRowMajor, m_ReverseDimensions); \ - } \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + core::Variable *variable = io.InquireVariable(variableName); \ + if (variable != nullptr) \ + { \ + helper::ClipContiguousMemory(variable->m_Data, variable->m_Start, variable->m_Count, \ + contiguousMemory, blockBox, intersectionBox, \ + m_IsRowMajor, m_ReverseDimensions); \ + } \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type } -#define declare_template_instantiation(T) \ - template void BP3Deserializer::GetSyncVariableDataFromStream( \ - core::Variable &, BufferSTL &) const; \ - \ - template typename core::Variable::BPInfo & \ - BP3Deserializer::InitVariableBlockInfo(core::Variable &, T *) const; \ - \ - template void BP3Deserializer::SetVariableBlockInfo( \ - core::Variable &, typename core::Variable::BPInfo &) const; \ - \ - template void BP3Deserializer::ClipContiguousMemory( \ - typename core::Variable::BPInfo &, const std::vector &, \ - const Box &, const Box &) const; \ - \ - template void BP3Deserializer::GetValueFromMetadata( \ - core::Variable &variable, T *) const; +#define declare_template_instantiation(T) \ + template void BP3Deserializer::GetSyncVariableDataFromStream(core::Variable &, BufferSTL &) \ + const; \ + \ + template typename core::Variable::BPInfo &BP3Deserializer::InitVariableBlockInfo( \ + core::Variable &, T *) const; \ + \ + template void BP3Deserializer::SetVariableBlockInfo( \ + core::Variable &, typename core::Variable::BPInfo &) const; \ + \ + template void BP3Deserializer::ClipContiguousMemory( \ + typename core::Variable::BPInfo &, const std::vector &, const Box &, \ + const Box &) const; \ + \ + template void BP3Deserializer::GetValueFromMetadata(core::Variable &variable, T *) const; ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation -#define declare_template_instantiation(T) \ - \ - template std::map \ - BP3Deserializer::GetSyncVariableSubFileInfo(const core::Variable &) \ - const; \ - \ - template void BP3Deserializer::GetDeferredVariable(core::Variable &, \ - T *); \ - \ - template helper::SubFileInfoMap BP3Deserializer::GetSubFileInfo( \ - const core::Variable &) const; \ - \ - template std::map::BPInfo>> \ - BP3Deserializer::AllStepsBlocksInfo(const core::Variable &) const; \ - \ - template std::vector::BPInfo>> \ - BP3Deserializer::AllRelativeStepsBlocksInfo(const core::Variable &) \ - const; \ - \ - template std::vector::BPInfo> \ - BP3Deserializer::BlocksInfo(const core::Variable &, const size_t) \ - const; \ - \ - template void BP3Deserializer::PreDataRead( \ - core::Variable &, typename core::Variable::BPInfo &, \ - const helper::SubStreamBoxInfo &, char *&, size_t &, size_t &, \ - const size_t); \ - \ - template void BP3Deserializer::PostDataRead( \ - core::Variable &, typename core::Variable::BPInfo &, \ +#define declare_template_instantiation(T) \ + \ + template std::map \ + BP3Deserializer::GetSyncVariableSubFileInfo(const core::Variable &) const; \ + \ + template void BP3Deserializer::GetDeferredVariable(core::Variable &, T *); \ + \ + template helper::SubFileInfoMap BP3Deserializer::GetSubFileInfo(const core::Variable &) \ + const; \ + \ + template std::map::BPInfo>> \ + BP3Deserializer::AllStepsBlocksInfo(const core::Variable &) const; \ + \ + template std::vector::BPInfo>> \ + BP3Deserializer::AllRelativeStepsBlocksInfo(const core::Variable &) const; \ + \ + template std::vector::BPInfo> BP3Deserializer::BlocksInfo( \ + const core::Variable &, const size_t) const; \ + \ + template void BP3Deserializer::PreDataRead( \ + core::Variable &, typename core::Variable::BPInfo &, \ + const helper::SubStreamBoxInfo &, char *&, size_t &, size_t &, const size_t); \ + \ + template void BP3Deserializer::PostDataRead( \ + core::Variable &, typename core::Variable::BPInfo &, \ const helper::SubStreamBoxInfo &, const bool, const size_t); ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) diff --git a/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.h b/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.h index f91f84d40c..50a749842e 100644 --- a/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.h +++ b/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.h @@ -50,8 +50,7 @@ class BP3Deserializer : virtual public BP3Base * @param bufferSTL bp buffer input that contains metadata and data */ template - void GetSyncVariableDataFromStream(core::Variable &variable, - BufferSTL &bufferSTL) const; + void GetSyncVariableDataFromStream(core::Variable &variable, BufferSTL &bufferSTL) const; /** * Initializes a block inside variable.m_BlocksInfo @@ -61,8 +60,8 @@ class BP3Deserializer : virtual public BP3Base * twice) */ template - typename core::Variable::BPInfo & - InitVariableBlockInfo(core::Variable &variable, T *data) const; + typename core::Variable::BPInfo &InitVariableBlockInfo(core::Variable &variable, + T *data) const; /** * Sets read block information from the available metadata information @@ -70,9 +69,8 @@ class BP3Deserializer : virtual public BP3Base * @param blockInfo */ template - void - SetVariableBlockInfo(core::Variable &variable, - typename core::Variable::BPInfo &blockInfo) const; + void SetVariableBlockInfo(core::Variable &variable, + typename core::Variable::BPInfo &blockInfo) const; /** * Prepares the information to get raw data from the transport manager for a @@ -91,18 +89,14 @@ class BP3Deserializer : virtual public BP3Base * spaces per thread, default = 0 */ template - void PreDataRead(core::Variable &variable, - typename core::Variable::BPInfo &blockInfo, - const helper::SubStreamBoxInfo &subStreamBoxInfo, - char *&buffer, size_t &payloadSize, size_t &payloadOffset, - const size_t threadID = 0); + void PreDataRead(core::Variable &variable, typename core::Variable::BPInfo &blockInfo, + const helper::SubStreamBoxInfo &subStreamBoxInfo, char *&buffer, + size_t &payloadSize, size_t &payloadOffset, const size_t threadID = 0); template - void PostDataRead(core::Variable &variable, - typename core::Variable::BPInfo &blockInfo, + void PostDataRead(core::Variable &variable, typename core::Variable::BPInfo &blockInfo, const helper::SubStreamBoxInfo &subStreamBoxInfo, - const bool isRowMajorDestination, - const size_t threadID = 0); + const bool isRowMajorDestination, const size_t threadID = 0); void BackCompatDecompress(const helper::SubStreamBoxInfo &subStreamBoxInfo, const size_t threadID = 0); @@ -117,8 +111,7 @@ class BP3Deserializer : virtual public BP3Base */ template void ClipContiguousMemory(typename core::Variable::BPInfo &blockInfo, - const std::vector &contiguousMemory, - const Box &blockBox, + const std::vector &contiguousMemory, const Box &blockBox, const Box &intersectionBox) const; /** @@ -138,12 +131,11 @@ class BP3Deserializer : virtual public BP3Base AllRelativeStepsBlocksInfo(const core::Variable &variable) const; template - std::vector::BPInfo> - BlocksInfo(const core::Variable &variable, const size_t step) const; + std::vector::BPInfo> BlocksInfo(const core::Variable &variable, + const size_t step) const; // TODO : Will deprecate all function below - std::map - PerformGetsVariablesSubFileInfo(core::IO &io); + std::map PerformGetsVariablesSubFileInfo(core::IO &io); // TODO : will deprecate template @@ -156,13 +148,11 @@ class BP3Deserializer : virtual public BP3Base // TODO : will deprecate template - helper::SubFileInfoMap - GetSubFileInfo(const core::Variable &variable) const; + helper::SubFileInfoMap GetSubFileInfo(const core::Variable &variable) const; // TODO : will deprecate void ClipMemory(const std::string &variableName, core::IO &io, - const std::vector &contiguousMemory, - const Box &blockBox, + const std::vector &contiguousMemory, const Box &blockBox, const Box &intersectionBox) const; // TODO: will deprecate @@ -182,8 +172,7 @@ class BP3Deserializer : virtual public BP3Base static std::mutex m_Mutex; void ParseMinifooter(const BufferSTL &bufferSTL); - void ParsePGIndex(const BufferSTL &bufferSTL, - const std::string hostLanguage); + void ParsePGIndex(const BufferSTL &bufferSTL, const std::string hostLanguage); void ParseVariablesIndex(const BufferSTL &bufferSTL, core::Engine &engine); void ParseAttributesIndex(const BufferSTL &bufferSTL, core::Engine &engine); @@ -196,16 +185,12 @@ class BP3Deserializer : virtual public BP3Base * @param position */ template - void DefineVariableInEngineIO(const ElementIndexHeader &header, - core::Engine &engine, - const std::vector &buffer, - size_t position) const; + void DefineVariableInEngineIO(const ElementIndexHeader &header, core::Engine &engine, + const std::vector &buffer, size_t position) const; template - void DefineAttributeInEngineIO(const ElementIndexHeader &header, - core::Engine &engine, - const std::vector &buffer, - size_t position) const; + void DefineAttributeInEngineIO(const ElementIndexHeader &header, core::Engine &engine, + const std::vector &buffer, size_t position) const; template void GetValueFromMetadataCommon(core::Variable &variable, T *data) const; @@ -216,8 +201,7 @@ class BP3Deserializer : virtual public BP3Base const std::vector &blocksIndexOffsets) const; const helper::BlockOperationInfo &InitPostOperatorBlockData( - const std::vector &blockOperationsInfo) - const; + const std::vector &blockOperationsInfo) const; }; } // end namespace format diff --git a/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.tcc b/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.tcc index cbcdf16a81..3c70091113 100644 --- a/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.tcc +++ b/source/adios2/toolkit/format/bp/bp3/BP3Deserializer.tcc @@ -28,8 +28,7 @@ template void BP3Deserializer::GetSyncVariableDataFromStream(core::Variable &variable, BufferSTL &bufferSTL) const { - auto itStep = variable.m_AvailableStepBlockIndexOffsets.find( - variable.m_StepsStart + 1); + auto itStep = variable.m_AvailableStepBlockIndexOffsets.find(variable.m_StepsStart + 1); if (itStep == variable.m_AvailableStepBlockIndexOffsets.end()) { @@ -41,10 +40,8 @@ void BP3Deserializer::GetSyncVariableDataFromStream(core::Variable &variable, size_t position = itStep->second.front(); size_t irrelevant; - const Characteristics characteristics = - ReadElementIndexCharacteristics(buffer, position, - TypeTraits::type_enum, irrelevant, - false, m_Minifooter.IsLittleEndian); + const Characteristics characteristics = ReadElementIndexCharacteristics( + buffer, position, TypeTraits::type_enum, irrelevant, false, m_Minifooter.IsLittleEndian); const size_t payloadOffset = characteristics.Statistics.PayloadOffset; variable.m_Data = reinterpret_cast(&buffer[payloadOffset]); @@ -52,8 +49,7 @@ void BP3Deserializer::GetSyncVariableDataFromStream(core::Variable &variable, template typename core::Variable::BPInfo & -BP3Deserializer::InitVariableBlockInfo(core::Variable &variable, - T *data) const +BP3Deserializer::InitVariableBlockInfo(core::Variable &variable, T *data) const { const size_t stepsStart = variable.m_StepsStart; const size_t stepsCount = variable.m_StepsCount; @@ -67,8 +63,8 @@ BP3Deserializer::InitVariableBlockInfo(core::Variable &variable, "steps start " + std::to_string(stepsStart) + " from SetStepsSelection or BeginStep is larger than " "the maximum available step " + - std::to_string(maxStep - 1) + " for variable " + - variable.m_Name + ", in call to Get"); + std::to_string(maxStep - 1) + " for variable " + variable.m_Name + + ", in call to Get"); } auto itStep = std::next(indices.begin(), stepsStart); @@ -81,13 +77,10 @@ BP3Deserializer::InitVariableBlockInfo(core::Variable &variable, if (itStep == indices.end()) { helper::Throw( - "Toolkit", "format::bp::BP3Deserializer", - "InitVariableBlockInfo", - "offset " + std::to_string(i) + " from steps start " + - std::to_string(stepsStart) + " in variable " + - variable.m_Name + - " is beyond the largest available step = " + - std::to_string(maxStep - 1) + + "Toolkit", "format::bp::BP3Deserializer", "InitVariableBlockInfo", + "offset " + std::to_string(i) + " from steps start " + std::to_string(stepsStart) + + " in variable " + variable.m_Name + + " is beyond the largest available step = " + std::to_string(maxStep - 1) + ", check Variable SetStepSelection argument stepsCount " "(random access), or " "number of BeginStep calls (streaming), in call to Get"); @@ -106,11 +99,9 @@ BP3Deserializer::InitVariableBlockInfo(core::Variable &variable, if (variable.m_BlockID >= blocksInfo.size()) { helper::Throw( - "Toolkit", "format::bp::BP3Deserializer", - "InitVariableBlockInfo", - "invalid blockID " + std::to_string(variable.m_BlockID) + - " from steps start " + std::to_string(stepsStart) + - " in variable " + variable.m_Name + + "Toolkit", "format::bp::BP3Deserializer", "InitVariableBlockInfo", + "invalid blockID " + std::to_string(variable.m_BlockID) + " from steps start " + + std::to_string(stepsStart) + " in variable " + variable.m_Name + ", check argument to Variable::SetBlockID, in call " "to Get"); } @@ -135,13 +126,12 @@ BP3Deserializer::InitVariableBlockInfo(core::Variable &variable, } template -void BP3Deserializer::SetVariableBlockInfo( - core::Variable &variable, - typename core::Variable::BPInfo &blockInfo) const +void BP3Deserializer::SetVariableBlockInfo(core::Variable &variable, + typename core::Variable::BPInfo &blockInfo) const { - auto lf_SetSubStreamInfoOperations = - [&](const BPOpInfo &bpOpInfo, const size_t payloadOffset, - helper::SubStreamBoxInfo &subStreamInfo, const bool isRowMajor) + auto lf_SetSubStreamInfoOperations = [&](const BPOpInfo &bpOpInfo, const size_t payloadOffset, + helper::SubStreamBoxInfo &subStreamInfo, + const bool isRowMajor) { helper::BlockOperationInfo blockOperation; @@ -158,26 +148,23 @@ void BP3Deserializer::SetVariableBlockInfo( // read metadata from supported type and populate Info if (m_Minifooter.ADIOSVersion >= 2008000) { - std::memcpy(&blockOperation.PayloadSize, - bpOpInfo.Metadata.data() + 8, 8); + std::memcpy(&blockOperation.PayloadSize, bpOpInfo.Metadata.data() + 8, 8); } else { // Files made before 2.8 have incompatible compression operators // Add backward compatible fixes here to parse compression metadata // directly from the BP4 metadata format - std::shared_ptr bpOp = - SetBPBackCompatOperation(bpOpInfo.Type); + std::shared_ptr bpOp = SetBPBackCompatOperation(bpOpInfo.Type); if (bpOp) { bpOp->GetMetadata(bpOpInfo.Metadata, blockOperation.Info); - blockOperation.PayloadSize = static_cast( - std::stoull(blockOperation.Info.at("OutputSize"))); + blockOperation.PayloadSize = + static_cast(std::stoull(blockOperation.Info.at("OutputSize"))); } else { - std::memcpy(&blockOperation.PayloadSize, - bpOpInfo.Metadata.data() + 8, 8); + std::memcpy(&blockOperation.PayloadSize, bpOpInfo.Metadata.data() + 8, 8); } } @@ -187,8 +174,7 @@ void BP3Deserializer::SetVariableBlockInfo( auto lf_SetSubStreamInfoLocalArray = [&](const std::string &variableName, const Box &selectionBox, typename core::Variable::BPInfo &blockInfo, const size_t step, - const size_t blockIndexOffset, const BufferSTL &bufferSTL, - const bool isRowMajor) + const size_t blockIndexOffset, const BufferSTL &bufferSTL, const bool isRowMajor) { const std::vector &buffer = bufferSTL.m_Buffer; @@ -197,9 +183,8 @@ void BP3Deserializer::SetVariableBlockInfo( size_t irrelevant; const Characteristics blockCharacteristics = - ReadElementIndexCharacteristics( - buffer, position, TypeTraits::type_enum, irrelevant, false, - m_Minifooter.IsLittleEndian); + ReadElementIndexCharacteristics(buffer, position, TypeTraits::type_enum, + irrelevant, false, m_Minifooter.IsLittleEndian); // check if they intersect helper::SubStreamBoxInfo subStreamInfo; @@ -209,9 +194,8 @@ void BP3Deserializer::SetVariableBlockInfo( } // if selection box start is not empty = local selection - subStreamInfo.BlockBox = - helper::StartEndBox(Dims(blockCharacteristics.Count.size(), 0), - blockCharacteristics.Count); + subStreamInfo.BlockBox = helper::StartEndBox(Dims(blockCharacteristics.Count.size(), 0), + blockCharacteristics.Count); if (!selectionBox.first.empty()) // selection start count was defined { @@ -233,8 +217,7 @@ void BP3Deserializer::SetVariableBlockInfo( if (dimensions != blockInfo.Count.size()) { helper::Throw( - "Toolkit", "format::bp::BP3Deserializer", - "SetVariableBlockInfo", + "Toolkit", "format::bp::BP3Deserializer", "SetVariableBlockInfo", "block Count (available) and " "selection Count (requested) number of dimensions, do not " "match " @@ -242,24 +225,21 @@ void BP3Deserializer::SetVariableBlockInfo( variableName + ", in call to Get"); } - const Dims readInCount = m_ReverseDimensions - ? Dims(blockCharacteristics.Count.rbegin(), - blockCharacteristics.Count.rend()) - : blockCharacteristics.Count; + const Dims readInCount = m_ReverseDimensions ? Dims(blockCharacteristics.Count.rbegin(), + blockCharacteristics.Count.rend()) + : blockCharacteristics.Count; - const Dims blockInfoStart = blockInfo.Start.empty() - ? Dims(blockInfo.Count.size(), 0) - : blockInfo.Start; + const Dims blockInfoStart = + blockInfo.Start.empty() ? Dims(blockInfo.Count.size(), 0) : blockInfo.Start; for (size_t i = 0; i < dimensions; ++i) { if (blockInfoStart[i] + blockInfo.Count[i] > readInCount[i]) { helper::Throw( - "Toolkit", "format::bp::BP3Deserializer", - "SetVariableBlockInfo", - "selection Start " + helper::DimsToString(blockInfoStart) + - " and Count " + helper::DimsToString(blockInfo.Count) + + "Toolkit", "format::bp::BP3Deserializer", "SetVariableBlockInfo", + "selection Start " + helper::DimsToString(blockInfoStart) + " and Count " + + helper::DimsToString(blockInfo.Count) + " (requested) is out of bounds of (available) local" " Count " + helper::DimsToString(readInCount) + @@ -270,25 +250,21 @@ void BP3Deserializer::SetVariableBlockInfo( subStreamInfo.Seeks.first = sizeof(T) * helper::LinearIndex(subStreamInfo.BlockBox, - subStreamInfo.IntersectionBox.first, - isRowMajor); + subStreamInfo.IntersectionBox.first, isRowMajor); subStreamInfo.Seeks.second = - sizeof(T) * (helper::LinearIndex( - subStreamInfo.BlockBox, - subStreamInfo.IntersectionBox.second, isRowMajor) + + sizeof(T) * (helper::LinearIndex(subStreamInfo.BlockBox, + subStreamInfo.IntersectionBox.second, isRowMajor) + 1); - const size_t payloadOffset = - blockCharacteristics.Statistics.PayloadOffset; + const size_t payloadOffset = blockCharacteristics.Statistics.PayloadOffset; const BPOpInfo &bpOp = blockCharacteristics.Statistics.Op; // if they intersect get info Seeks (first: start, second: // count) depending on operation info if (bpOp.IsActive) { - lf_SetSubStreamInfoOperations(bpOp, payloadOffset, subStreamInfo, - m_IsRowMajor); + lf_SetSubStreamInfoOperations(bpOp, payloadOffset, subStreamInfo, m_IsRowMajor); } else { @@ -296,18 +272,15 @@ void BP3Deserializer::SetVariableBlockInfo( subStreamInfo.Seeks.first += payloadOffset; subStreamInfo.Seeks.second += payloadOffset; } - subStreamInfo.SubStreamID = - static_cast(blockCharacteristics.Statistics.FileIndex); + subStreamInfo.SubStreamID = static_cast(blockCharacteristics.Statistics.FileIndex); - blockInfo.StepBlockSubStreamsInfo[step].push_back( - std::move(subStreamInfo)); + blockInfo.StepBlockSubStreamsInfo[step].push_back(std::move(subStreamInfo)); }; auto lf_SetSubStreamInfoGlobalArray = [&](const std::string &variableName, const Box &selectionBox, typename core::Variable::BPInfo &blockInfo, const size_t step, - const size_t blockIndexOffset, const BufferSTL &bufferSTL, - const bool isRowMajor) + const size_t blockIndexOffset, const BufferSTL &bufferSTL, const bool isRowMajor) { const std::vector &buffer = bufferSTL.m_Buffer; @@ -316,9 +289,8 @@ void BP3Deserializer::SetVariableBlockInfo( size_t irrelevant; const Characteristics blockCharacteristics = - ReadElementIndexCharacteristics( - buffer, position, TypeTraits::type_enum, irrelevant, false, - m_Minifooter.IsLittleEndian); + ReadElementIndexCharacteristics(buffer, position, TypeTraits::type_enum, + irrelevant, false, m_Minifooter.IsLittleEndian); // check if they intersect helper::SubStreamBoxInfo subStreamInfo; @@ -328,8 +300,8 @@ void BP3Deserializer::SetVariableBlockInfo( subStreamInfo.ZeroBlock = true; } - subStreamInfo.BlockBox = helper::StartEndBox( - blockCharacteristics.Start, blockCharacteristics.Count); + subStreamInfo.BlockBox = + helper::StartEndBox(blockCharacteristics.Start, blockCharacteristics.Count); subStreamInfo.IntersectionBox = helper::IntersectionBox(selectionBox, subStreamInfo.BlockBox); @@ -342,24 +314,20 @@ void BP3Deserializer::SetVariableBlockInfo( // relative position subStreamInfo.Seeks.first = sizeof(T) * helper::LinearIndex(subStreamInfo.BlockBox, - subStreamInfo.IntersectionBox.first, - isRowMajor); + subStreamInfo.IntersectionBox.first, isRowMajor); subStreamInfo.Seeks.second = - sizeof(T) * (helper::LinearIndex( - subStreamInfo.BlockBox, - subStreamInfo.IntersectionBox.second, isRowMajor) + + sizeof(T) * (helper::LinearIndex(subStreamInfo.BlockBox, + subStreamInfo.IntersectionBox.second, isRowMajor) + 1); - const size_t payloadOffset = - blockCharacteristics.Statistics.PayloadOffset; + const size_t payloadOffset = blockCharacteristics.Statistics.PayloadOffset; const auto &bp3Op = blockCharacteristics.Statistics.Op; // if they intersect get info Seeks (first: start, second: // count) depending on operation info if (bp3Op.IsActive) { - lf_SetSubStreamInfoOperations(bp3Op, payloadOffset, subStreamInfo, - m_IsRowMajor); + lf_SetSubStreamInfoOperations(bp3Op, payloadOffset, subStreamInfo, m_IsRowMajor); } else { @@ -367,19 +335,17 @@ void BP3Deserializer::SetVariableBlockInfo( subStreamInfo.Seeks.first += payloadOffset; subStreamInfo.Seeks.second += payloadOffset; } - subStreamInfo.SubStreamID = - static_cast(blockCharacteristics.Statistics.FileIndex); + subStreamInfo.SubStreamID = static_cast(blockCharacteristics.Statistics.FileIndex); - blockInfo.StepBlockSubStreamsInfo[step].push_back( - std::move(subStreamInfo)); + blockInfo.StepBlockSubStreamsInfo[step].push_back(std::move(subStreamInfo)); }; // BODY OF FUNCTIONS STARTS HERE const std::map> &indices = variable.m_AvailableStepBlockIndexOffsets; - const Box selectionBox = helper::StartEndBox( - blockInfo.Start, blockInfo.Count, m_ReverseDimensions); + const Box selectionBox = + helper::StartEndBox(blockInfo.Start, blockInfo.Count, m_ReverseDimensions); auto itStep = std::next(indices.begin(), blockInfo.StepsStart); @@ -396,13 +362,11 @@ void BP3Deserializer::SetVariableBlockInfo( if (dimensions != blockInfo.Shape.size()) { helper::Throw( - "Toolkit", "format::bp::BP3Deserializer", - "SetVariableBlockInfo", + "Toolkit", "format::bp::BP3Deserializer", "SetVariableBlockInfo", "block Shape (available) and " "selection Shape (requested) number of dimensions, do not " "match in step " + - std::to_string(step) + - "when reading global array variable " + + std::to_string(step) + "when reading global array variable " + variable.m_Name + ", in call to Get"); } @@ -411,32 +375,28 @@ void BP3Deserializer::SetVariableBlockInfo( if (blockInfo.Start[i] + blockInfo.Count[i] > readInShape[i]) { helper::Throw( - "Toolkit", "format::bp::BP3Deserializer", - "SetVariableBlockInfo", - "selection Start " + - helper::DimsToString(blockInfo.Start) + - " and Count " + + "Toolkit", "format::bp::BP3Deserializer", "SetVariableBlockInfo", + "selection Start " + helper::DimsToString(blockInfo.Start) + " and Count " + helper::DimsToString(blockInfo.Count) + " (requested) is out of bounds of (available) " "Shape " + helper::DimsToString(readInShape) + - " , when reading global array variable " + - variable.m_Name + ", in call to Get"); + " , when reading global array variable " + variable.m_Name + + ", in call to Get"); } } // Get intersections with each block for (const size_t blockOffset : blockOffsets) { - lf_SetSubStreamInfoGlobalArray(variable.m_Name, selectionBox, - blockInfo, step, blockOffset, - m_Metadata, m_IsRowMajor); + lf_SetSubStreamInfoGlobalArray(variable.m_Name, selectionBox, blockInfo, step, + blockOffset, m_Metadata, m_IsRowMajor); } } else if (variable.m_ShapeID == ShapeID::LocalArray) { - lf_SetSubStreamInfoLocalArray( - variable.m_Name, selectionBox, blockInfo, step, - blockOffsets[blockInfo.BlockID], m_Metadata, m_IsRowMajor); + lf_SetSubStreamInfoLocalArray(variable.m_Name, selectionBox, blockInfo, step, + blockOffsets[blockInfo.BlockID], m_Metadata, + m_IsRowMajor); } ++itStep; @@ -444,13 +404,11 @@ void BP3Deserializer::SetVariableBlockInfo( } template -void BP3Deserializer::GetValueFromMetadata(core::Variable &variable, - T *data) const +void BP3Deserializer::GetValueFromMetadata(core::Variable &variable, T *data) const { const auto &buffer = m_Metadata.m_Buffer; - const typename core::Variable::BPInfo &blockInfo = - InitVariableBlockInfo(variable, data); + const typename core::Variable::BPInfo &blockInfo = InitVariableBlockInfo(variable, data); const size_t stepsStart = blockInfo.StepsStart; const size_t stepsCount = blockInfo.StepsCount; @@ -464,36 +422,30 @@ void BP3Deserializer::GetValueFromMetadata(core::Variable &variable, const std::vector &positions = itStep->second; // global values only read one block per step - const size_t blocksStart = (variable.m_ShapeID == ShapeID::GlobalArray) - ? blockInfo.Start.front() - : 0; + const size_t blocksStart = + (variable.m_ShapeID == ShapeID::GlobalArray) ? blockInfo.Start.front() : 0; - const size_t blocksCount = (variable.m_ShapeID == ShapeID::GlobalArray) - ? blockInfo.Count.front() - : 1; + const size_t blocksCount = + (variable.m_ShapeID == ShapeID::GlobalArray) ? blockInfo.Count.front() : 1; if (blocksStart + blocksCount > positions.size()) { helper::Throw( - "Toolkit", "format::bp::BP3Deserializer", - "GetValueFromMetadata", - "selection Start {" + std::to_string(blocksStart) + - "} and Count {" + std::to_string(blocksCount) + + "Toolkit", "format::bp::BP3Deserializer", "GetValueFromMetadata", + "selection Start {" + std::to_string(blocksStart) + "} and Count {" + + std::to_string(blocksCount) + "} (requested) is out of bounds of (available) Shape {" + - std::to_string(positions.size()) + "} for relative step " + - std::to_string(s) + - " , when reading 1D global array variable " + - variable.m_Name + ", in call to Get"); + std::to_string(positions.size()) + "} for relative step " + std::to_string(s) + + " , when reading 1D global array variable " + variable.m_Name + + ", in call to Get"); } for (size_t b = blocksStart; b < blocksStart + blocksCount; ++b) { size_t localPosition = positions[b]; size_t irrelevant; - const Characteristics characteristics = - ReadElementIndexCharacteristics( - buffer, localPosition, type_string, irrelevant, false, - m_Minifooter.IsLittleEndian); + const Characteristics characteristics = ReadElementIndexCharacteristics( + buffer, localPosition, type_string, irrelevant, false, m_Minifooter.IsLittleEndian); data[dataCounter] = characteristics.Statistics.Value; ++dataCounter; @@ -506,18 +458,17 @@ void BP3Deserializer::GetValueFromMetadata(core::Variable &variable, } template -void BP3Deserializer::PreDataRead( - core::Variable &variable, typename core::Variable::BPInfo &blockInfo, - const helper::SubStreamBoxInfo &subStreamBoxInfo, char *&buffer, - size_t &payloadSize, size_t &payloadOffset, const size_t threadID) +void BP3Deserializer::PreDataRead(core::Variable &variable, + typename core::Variable::BPInfo &blockInfo, + const helper::SubStreamBoxInfo &subStreamBoxInfo, char *&buffer, + size_t &payloadSize, size_t &payloadOffset, const size_t threadID) { if (subStreamBoxInfo.OperationsInfo.size() > 0) { const helper::BlockOperationInfo &blockOperationInfo = InitPostOperatorBlockData(subStreamBoxInfo.OperationsInfo); - m_ThreadBuffers[threadID][1].resize(blockOperationInfo.PayloadSize, - '\0'); + m_ThreadBuffers[threadID][1].resize(blockOperationInfo.PayloadSize, '\0'); buffer = m_ThreadBuffers[threadID][1].data(); @@ -535,10 +486,10 @@ void BP3Deserializer::PreDataRead( } template -void BP3Deserializer::PostDataRead( - core::Variable &variable, typename core::Variable::BPInfo &blockInfo, - const helper::SubStreamBoxInfo &subStreamBoxInfo, - const bool isRowMajorDestination, const size_t threadID) +void BP3Deserializer::PostDataRead(core::Variable &variable, + typename core::Variable::BPInfo &blockInfo, + const helper::SubStreamBoxInfo &subStreamBoxInfo, + const bool isRowMajorDestination, const size_t threadID) { if (subStreamBoxInfo.OperationsInfo.size() > 0) { @@ -548,8 +499,7 @@ void BP3Deserializer::PostDataRead( InitPostOperatorBlockData(subStreamBoxInfo.OperationsInfo); const size_t preOpPayloadSize = - helper::GetTotalSize(blockOperationInfo.PreCount) * - blockOperationInfo.PreSizeOf; + helper::GetTotalSize(blockOperationInfo.PreCount) * blockOperationInfo.PreSizeOf; m_ThreadBuffers[threadID][0].resize(preOpPayloadSize); // get original block back @@ -565,12 +515,11 @@ void BP3Deserializer::PostDataRead( break; } } - core::Decompress(postOpData, blockOperationInfo.PayloadSize, - preOpData, blockInfo.MemSpace, op); + core::Decompress(postOpData, blockOperationInfo.PayloadSize, preOpData, + blockInfo.MemSpace, op); // clip block to match selection - helper::ClipVector(m_ThreadBuffers[threadID][0], - subStreamBoxInfo.Seeks.first, + helper::ClipVector(m_ThreadBuffers[threadID][0], subStreamBoxInfo.Seeks.first, subStreamBoxInfo.Seeks.second); } else @@ -583,8 +532,7 @@ void BP3Deserializer::PostDataRead( #ifdef ADIOS2_HAVE_ENDIAN_REVERSE const bool endianReverse = - (helper::IsLittleEndian() != m_Minifooter.IsLittleEndian) ? true - : false; + (helper::IsLittleEndian() != m_Minifooter.IsLittleEndian) ? true : false; #else constexpr bool endianReverse = false; #endif @@ -598,24 +546,22 @@ void BP3Deserializer::PostDataRead( { if (endianReverse) { - helper::Throw( - "Toolkit", "format::bp::BP3Deserializer", "PostDataRead", - "endianReverse " - "not supported with MemorySelection"); + helper::Throw("Toolkit", "format::bp::BP3Deserializer", + "PostDataRead", + "endianReverse " + "not supported with MemorySelection"); } if (m_ReverseDimensions) { - helper::Throw( - "Toolkit", "format::bp::BP3Deserializer", "PostDataRead", - "ReverseDimensions not supported with " - "MemorySelection"); + helper::Throw("Toolkit", "format::bp::BP3Deserializer", + "PostDataRead", + "ReverseDimensions not supported with " + "MemorySelection"); } - helper::DimsArray intersectStart( - subStreamBoxInfo.IntersectionBox.first); - helper::DimsArray intersectCount( - subStreamBoxInfo.IntersectionBox.second); + helper::DimsArray intersectStart(subStreamBoxInfo.IntersectionBox.first); + helper::DimsArray intersectCount(subStreamBoxInfo.IntersectionBox.second); helper::DimsArray blockStart(subStreamBoxInfo.BlockBox.first); helper::DimsArray blockCount(subStreamBoxInfo.BlockBox.second); helper::DimsArray memoryStart(blockInfoStart); @@ -628,25 +574,22 @@ void BP3Deserializer::PostDataRead( intersectStart[d] += blockInfo.MemoryStart[d]; blockStart[d] += blockInfo.MemoryStart[d]; } - helper::NdCopy(m_ThreadBuffers[threadID][0].data(), intersectStart, - intersectCount, true, true, - reinterpret_cast(blockInfo.Data), intersectStart, - intersectCount, true, true, sizeof(T), intersectStart, - blockCount, memoryStart, - helper::DimsArray(blockInfo.MemoryCount), false); + helper::NdCopy(m_ThreadBuffers[threadID][0].data(), intersectStart, intersectCount, true, + true, reinterpret_cast(blockInfo.Data), intersectStart, + intersectCount, true, true, sizeof(T), intersectStart, blockCount, + memoryStart, helper::DimsArray(blockInfo.MemoryCount), false); } else { - helper::ClipContiguousMemory( - blockInfo.Data, blockInfoStart, blockInfo.Count, - m_ThreadBuffers[threadID][0].data(), subStreamBoxInfo.BlockBox, - subStreamBoxInfo.IntersectionBox, m_IsRowMajor, m_ReverseDimensions, - endianReverse); + helper::ClipContiguousMemory(blockInfo.Data, blockInfoStart, blockInfo.Count, + m_ThreadBuffers[threadID][0].data(), subStreamBoxInfo.BlockBox, + subStreamBoxInfo.IntersectionBox, m_IsRowMajor, + m_ReverseDimensions, endianReverse); } } -void BP3Deserializer::BackCompatDecompress( - const helper::SubStreamBoxInfo &subStreamBoxInfo, const size_t threadID) +void BP3Deserializer::BackCompatDecompress(const helper::SubStreamBoxInfo &subStreamBoxInfo, + const size_t threadID) { // Files made before 2.8 have incompatible compression operators // Add backward compatible fixes here @@ -654,8 +597,7 @@ void BP3Deserializer::BackCompatDecompress( InitPostOperatorBlockData(subStreamBoxInfo.OperationsInfo); const size_t preOpPayloadSize = - helper::GetTotalSize(blockOperationInfo.PreCount) * - blockOperationInfo.PreSizeOf; + helper::GetTotalSize(blockOperationInfo.PreCount) * blockOperationInfo.PreSizeOf; m_ThreadBuffers[threadID][0].resize(preOpPayloadSize); std::string opType = blockOperationInfo.Info.at("Type"); @@ -664,15 +606,13 @@ void BP3Deserializer::BackCompatDecompress( char *preOpData = m_ThreadBuffers[threadID][0].data(); const char *postOpData = m_ThreadBuffers[threadID][1].data(); // get the right bp3Op - std::shared_ptr bp3Op = - SetBPBackCompatOperation(opType); + std::shared_ptr bp3Op = SetBPBackCompatOperation(opType); if (bp3Op) { bp3Op->GetData(postOpData, blockOperationInfo, preOpData); // clip block to match selection - helper::ClipVector(m_ThreadBuffers[threadID][0], - subStreamBoxInfo.Seeks.first, + helper::ClipVector(m_ThreadBuffers[threadID][0], subStreamBoxInfo.Seeks.first, subStreamBoxInfo.Seeks.second); } else @@ -691,35 +631,30 @@ template std::map::BPInfo>> BP3Deserializer::AllStepsBlocksInfo(const core::Variable &variable) const { - std::map::BPInfo>> - allStepsBlocksInfo; + std::map::BPInfo>> allStepsBlocksInfo; for (const auto &pair : variable.m_AvailableStepBlockIndexOffsets) { const size_t step = pair.first; const std::vector &blockPositions = pair.second; // bp3 index starts at 1 - allStepsBlocksInfo[step - 1] = - BlocksInfoCommon(variable, blockPositions); + allStepsBlocksInfo[step - 1] = BlocksInfoCommon(variable, blockPositions); } return allStepsBlocksInfo; } template std::vector::BPInfo>> -BP3Deserializer::AllRelativeStepsBlocksInfo( - const core::Variable &variable) const +BP3Deserializer::AllRelativeStepsBlocksInfo(const core::Variable &variable) const { - std::vector::BPInfo>> - allRelativeStepsBlocksInfo( - variable.m_AvailableStepBlockIndexOffsets.size()); + std::vector::BPInfo>> allRelativeStepsBlocksInfo( + variable.m_AvailableStepBlockIndexOffsets.size()); size_t relativeStep = 0; for (const auto &pair : variable.m_AvailableStepBlockIndexOffsets) { const std::vector &blockPositions = pair.second; - allRelativeStepsBlocksInfo[relativeStep] = - BlocksInfoCommon(variable, blockPositions); + allRelativeStepsBlocksInfo[relativeStep] = BlocksInfoCommon(variable, blockPositions); ++relativeStep; } return allRelativeStepsBlocksInfo; @@ -727,8 +662,7 @@ BP3Deserializer::AllRelativeStepsBlocksInfo( template std::vector::BPInfo> -BP3Deserializer::BlocksInfo(const core::Variable &variable, - const size_t step) const +BP3Deserializer::BlocksInfo(const core::Variable &variable, const size_t step) const { // bp3 format starts at 1 auto itStep = variable.m_AvailableStepBlockIndexOffsets.find(step + 1); @@ -740,33 +674,32 @@ BP3Deserializer::BlocksInfo(const core::Variable &variable, } template -void BP3Deserializer::ClipContiguousMemory( - typename core::Variable::BPInfo &blockInfo, - const std::vector &contiguousMemory, const Box &blockBox, - const Box &intersectionBox) const +void BP3Deserializer::ClipContiguousMemory(typename core::Variable::BPInfo &blockInfo, + const std::vector &contiguousMemory, + const Box &blockBox, + const Box &intersectionBox) const { - helper::ClipContiguousMemory( - blockInfo.Data, blockInfo.Start, blockInfo.Count, contiguousMemory, - blockBox, intersectionBox, m_IsRowMajor, m_ReverseDimensions); + helper::ClipContiguousMemory(blockInfo.Data, blockInfo.Start, blockInfo.Count, contiguousMemory, + blockBox, intersectionBox, m_IsRowMajor, m_ReverseDimensions); } // PRIVATE template <> -inline void BP3Deserializer::DefineVariableInEngineIO( - const ElementIndexHeader &header, core::Engine &engine, - const std::vector &buffer, size_t position) const +inline void BP3Deserializer::DefineVariableInEngineIO(const ElementIndexHeader &header, + core::Engine &engine, + const std::vector &buffer, + size_t position) const { const size_t initialPosition = position; size_t irrelevant; const Characteristics characteristics = ReadElementIndexCharacteristics( - buffer, position, static_cast(header.DataType), - irrelevant, false, m_Minifooter.IsLittleEndian); + buffer, position, static_cast(header.DataType), irrelevant, false, + m_Minifooter.IsLittleEndian); const std::string variableName = - header.Path.empty() ? header.Name - : header.Path + PathSeparator + header.Name; + header.Path.empty() ? header.Name : header.Path + PathSeparator + header.Name; core::Variable *variable = nullptr; if (characteristics.Statistics.IsValue) @@ -774,8 +707,7 @@ inline void BP3Deserializer::DefineVariableInEngineIO( std::lock_guard lock(m_Mutex); variable = &engine.m_IO.DefineVariable(variableName); engine.RegisterCreatedVariable(variable); - variable->m_Value = - characteristics.Statistics.Value; // assigning first step + variable->m_Value = characteristics.Statistics.Value; // assigning first step if (characteristics.EntryShapeID == ShapeID::LocalValue) { @@ -787,21 +719,18 @@ inline void BP3Deserializer::DefineVariableInEngineIO( } else { - helper::Throw( - "Toolkit", "format::bp::BP3Deserializer", - "DefineVariableInEngineIO", - "variable " + variableName + - " of type string can't be an array, when " - "parsing metadata in call to Open"); + helper::Throw("Toolkit", "format::bp::BP3Deserializer", + "DefineVariableInEngineIO", + "variable " + variableName + + " of type string can't be an array, when " + "parsing metadata in call to Open"); } // going back to get variable index position variable->m_IndexStart = - initialPosition - (header.Name.size() + header.GroupName.size() + - header.Path.size() + 23); + initialPosition - (header.Name.size() + header.GroupName.size() + header.Path.size() + 23); - const size_t endPosition = - variable->m_IndexStart + static_cast(header.Length) + 4; + const size_t endPosition = variable->m_IndexStart + static_cast(header.Length) + 4; position = initialPosition; @@ -817,11 +746,10 @@ inline void BP3Deserializer::DefineVariableInEngineIO( // read until step is found const Characteristics subsetCharacteristics = ReadElementIndexCharacteristics( - buffer, position, static_cast(header.DataType), - irrelevant, false, m_Minifooter.IsLittleEndian); + buffer, position, static_cast(header.DataType), irrelevant, false, + m_Minifooter.IsLittleEndian); - const bool isNextStep = - stepsFound.insert(subsetCharacteristics.Statistics.Step).second; + const bool isNextStep = stepsFound.insert(subsetCharacteristics.Statistics.Step).second; // if new step is inserted if (isNextStep) @@ -844,8 +772,7 @@ inline void BP3Deserializer::DefineVariableInEngineIO( } } - variable->m_AvailableStepBlockIndexOffsets[currentStep].push_back( - subsetPosition); + variable->m_AvailableStepBlockIndexOffsets[currentStep].push_back(subsetPosition); position = subsetPosition + subsetCharacteristics.EntryLength + 5; } @@ -870,14 +797,12 @@ void BP3Deserializer::DefineVariableInEngineIO(const ElementIndexHeader &header, const size_t initialPosition = position; size_t irrelevant; - const Characteristics characteristics = - ReadElementIndexCharacteristics( - buffer, position, static_cast(header.DataType), - irrelevant, false, m_Minifooter.IsLittleEndian); + const Characteristics characteristics = ReadElementIndexCharacteristics( + buffer, position, static_cast(header.DataType), irrelevant, false, + m_Minifooter.IsLittleEndian); const std::string variableName = - header.Path.empty() ? header.Name - : header.Path + PathSeparator + header.Name; + header.Path.empty() ? header.Name : header.Path + PathSeparator + header.Name; core::Variable *variable = nullptr; { @@ -889,38 +814,32 @@ void BP3Deserializer::DefineVariableInEngineIO(const ElementIndexHeader &header, break; } case (ShapeID::GlobalArray): { - const Dims shape = m_ReverseDimensions - ? Dims(characteristics.Shape.rbegin(), - characteristics.Shape.rend()) - : characteristics.Shape; - - variable = &engine.m_IO.DefineVariable( - variableName, shape, Dims(shape.size(), 0), shape); - variable->m_AvailableShapes[characteristics.Statistics.Step] = - variable->m_Shape; + const Dims shape = m_ReverseDimensions ? Dims(characteristics.Shape.rbegin(), + characteristics.Shape.rend()) + : characteristics.Shape; + + variable = + &engine.m_IO.DefineVariable(variableName, shape, Dims(shape.size(), 0), shape); + variable->m_AvailableShapes[characteristics.Statistics.Step] = variable->m_Shape; break; } case (ShapeID::LocalValue): { - variable = - &engine.m_IO.DefineVariable(variableName, {1}, {0}, {1}); + variable = &engine.m_IO.DefineVariable(variableName, {1}, {0}, {1}); variable->m_ShapeID = ShapeID::LocalValue; break; } case (ShapeID::LocalArray): { - const Dims count = m_ReverseDimensions - ? Dims(characteristics.Count.rbegin(), - characteristics.Count.rend()) - : characteristics.Count; - variable = - &engine.m_IO.DefineVariable(variableName, {}, {}, count); + const Dims count = m_ReverseDimensions ? Dims(characteristics.Count.rbegin(), + characteristics.Count.rend()) + : characteristics.Count; + variable = &engine.m_IO.DefineVariable(variableName, {}, {}, count); break; } default: - helper::Throw( - "Toolkit", "format::bp::BP3Deserializer", - "DefineVariableInEngineIO", - "invalid ShapeID or not yet supported for variable " + - variableName + ", in call to Open"); + helper::Throw("Toolkit", "format::bp::BP3Deserializer", + "DefineVariableInEngineIO", + "invalid ShapeID or not yet supported for variable " + + variableName + ", in call to Open"); } // end switch engine.RegisterCreatedVariable(variable); @@ -940,11 +859,9 @@ void BP3Deserializer::DefineVariableInEngineIO(const ElementIndexHeader &header, // going back to get variable index position variable->m_IndexStart = - initialPosition - (header.Name.size() + header.GroupName.size() + - header.Path.size() + 23); + initialPosition - (header.Name.size() + header.GroupName.size() + header.Path.size() + 23); - const size_t endPosition = - variable->m_IndexStart + static_cast(header.Length) + 4; + const size_t endPosition = variable->m_IndexStart + static_cast(header.Length) + 4; position = initialPosition; @@ -957,10 +874,9 @@ void BP3Deserializer::DefineVariableInEngineIO(const ElementIndexHeader &header, size_t irrelevant; // read until step is found - const Characteristics subsetCharacteristics = - ReadElementIndexCharacteristics( - buffer, position, static_cast(header.DataType), - irrelevant, false, m_Minifooter.IsLittleEndian); + const Characteristics subsetCharacteristics = ReadElementIndexCharacteristics( + buffer, position, static_cast(header.DataType), irrelevant, false, + m_Minifooter.IsLittleEndian); const T blockMin = characteristics.Statistics.IsValue ? subsetCharacteristics.Statistics.Value @@ -969,8 +885,7 @@ void BP3Deserializer::DefineVariableInEngineIO(const ElementIndexHeader &header, ? subsetCharacteristics.Statistics.Value : subsetCharacteristics.Statistics.Max; - const bool isNextStep = - stepsFound.insert(subsetCharacteristics.Statistics.Step).second; + const bool isNextStep = stepsFound.insert(subsetCharacteristics.Statistics.Step).second; if (isNextStep) { @@ -994,17 +909,15 @@ void BP3Deserializer::DefineVariableInEngineIO(const ElementIndexHeader &header, // Shape definition is by the last block now, not the first block if (subsetCharacteristics.EntryShapeID == ShapeID::GlobalArray) { - const Dims shape = m_ReverseDimensions - ? Dims(subsetCharacteristics.Shape.rbegin(), - subsetCharacteristics.Shape.rend()) - : subsetCharacteristics.Shape; + const Dims shape = m_ReverseDimensions ? Dims(subsetCharacteristics.Shape.rbegin(), + subsetCharacteristics.Shape.rend()) + : subsetCharacteristics.Shape; variable->m_Shape = shape; variable->m_AvailableShapes[currentStep] = shape; } // update min max for global values only if new step is found - if ((isNextStep && - subsetCharacteristics.EntryShapeID == ShapeID::GlobalValue) || + if ((isNextStep && subsetCharacteristics.EntryShapeID == ShapeID::GlobalValue) || (subsetCharacteristics.EntryShapeID != ShapeID::GlobalValue)) { if (helper::LessThan(blockMin, variable->m_Min)) @@ -1018,8 +931,7 @@ void BP3Deserializer::DefineVariableInEngineIO(const ElementIndexHeader &header, } } - variable->m_AvailableStepBlockIndexOffsets[currentStep].push_back( - subsetPosition); + variable->m_AvailableStepBlockIndexOffsets[currentStep].push_back(subsetPosition); position = subsetPosition + subsetCharacteristics.EntryLength + 5; } @@ -1038,15 +950,15 @@ void BP3Deserializer::DefineVariableInEngineIO(const ElementIndexHeader &header, } template -void BP3Deserializer::DefineAttributeInEngineIO( - const ElementIndexHeader &header, core::Engine &engine, - const std::vector &buffer, size_t position) const +void BP3Deserializer::DefineAttributeInEngineIO(const ElementIndexHeader &header, + core::Engine &engine, + const std::vector &buffer, + size_t position) const { size_t irrelevant; - const Characteristics characteristics = - ReadElementIndexCharacteristics( - buffer, position, static_cast(header.DataType), - irrelevant, false, m_Minifooter.IsLittleEndian); + const Characteristics characteristics = ReadElementIndexCharacteristics( + buffer, position, static_cast(header.DataType), irrelevant, false, + m_Minifooter.IsLittleEndian); std::string attributeName(header.Name); if (!header.Path.empty()) @@ -1056,21 +968,19 @@ void BP3Deserializer::DefineAttributeInEngineIO( if (characteristics.Statistics.IsValue) { - engine.m_IO.DefineAttribute( - attributeName, characteristics.Statistics.Value, "", "/", true); + engine.m_IO.DefineAttribute(attributeName, characteristics.Statistics.Value, "", "/", + true); } else { - engine.m_IO.DefineAttribute( - attributeName, characteristics.Statistics.Values.data(), - characteristics.Statistics.Values.size(), "", "/", true); + engine.m_IO.DefineAttribute(attributeName, characteristics.Statistics.Values.data(), + characteristics.Statistics.Values.size(), "", "/", true); } } template std::map -BP3Deserializer::GetSyncVariableSubFileInfo( - const core::Variable &variable) const +BP3Deserializer::GetSyncVariableSubFileInfo(const core::Variable &variable) const { std::map variableSubFileInfo; variableSubFileInfo[variable.m_Name] = GetSubFileInfo(variable); @@ -1085,24 +995,22 @@ void BP3Deserializer::GetDeferredVariable(core::Variable &variable, T *data) } template -helper::SubFileInfoMap -BP3Deserializer::GetSubFileInfo(const core::Variable &variable) const +helper::SubFileInfoMap BP3Deserializer::GetSubFileInfo(const core::Variable &variable) const { helper::SubFileInfoMap infoMap; const auto &buffer = m_Metadata.m_Buffer; auto itStep = variable.m_AvailableStepBlockIndexOffsets.begin(); - const size_t absStepStart = itStep->first; // absolute step in map + const size_t absStepStart = itStep->first; // absolute step in map const size_t stepEnd = absStepStart + variable.m_StepsCount; // exclusive - const Box selectionBox = helper::StartEndBox( - variable.m_Start, variable.m_Count, m_ReverseDimensions); + const Box selectionBox = + helper::StartEndBox(variable.m_Start, variable.m_Count, m_ReverseDimensions); for (size_t step = absStepStart; step < stepEnd; ++step) { - auto itBlockStarts = - variable.m_AvailableStepBlockIndexOffsets.find(step); + auto itBlockStarts = variable.m_AvailableStepBlockIndexOffsets.find(step); if (itBlockStarts == variable.m_AvailableStepBlockIndexOffsets.end()) { continue; @@ -1115,19 +1023,16 @@ BP3Deserializer::GetSubFileInfo(const core::Variable &variable) const { size_t irrelevant; const Characteristics blockCharacteristics = - ReadElementIndexCharacteristics( - buffer, blockPosition, TypeTraits::type_enum, irrelevant, - false, m_Minifooter.IsLittleEndian); + ReadElementIndexCharacteristics(buffer, blockPosition, TypeTraits::type_enum, + irrelevant, false, m_Minifooter.IsLittleEndian); // check if they intersect helper::SubFileInfo info; - info.BlockBox = helper::StartEndBox(blockCharacteristics.Start, - blockCharacteristics.Count); - info.IntersectionBox = - helper::IntersectionBox(selectionBox, info.BlockBox); + info.BlockBox = + helper::StartEndBox(blockCharacteristics.Start, blockCharacteristics.Count); + info.IntersectionBox = helper::IntersectionBox(selectionBox, info.BlockBox); - if (info.IntersectionBox.first.empty() || - info.IntersectionBox.second.empty()) + if (info.IntersectionBox.first.empty() || info.IntersectionBox.second.empty()) { continue; } @@ -1135,19 +1040,16 @@ BP3Deserializer::GetSubFileInfo(const core::Variable &variable) const // count) info.Seeks.first = blockCharacteristics.Statistics.PayloadOffset + - helper::LinearIndex(info.BlockBox, info.IntersectionBox.first, - m_IsRowMajor) * + helper::LinearIndex(info.BlockBox, info.IntersectionBox.first, m_IsRowMajor) * sizeof(T); info.Seeks.second = blockCharacteristics.Statistics.PayloadOffset + - (helper::LinearIndex(info.BlockBox, info.IntersectionBox.second, - m_IsRowMajor) + + (helper::LinearIndex(info.BlockBox, info.IntersectionBox.second, m_IsRowMajor) + 1) * sizeof(T); - const size_t fileIndex = - static_cast(blockCharacteristics.Statistics.FileIndex); + const size_t fileIndex = static_cast(blockCharacteristics.Statistics.FileIndex); infoMap[fileIndex][step].push_back(std::move(info)); } @@ -1159,9 +1061,8 @@ BP3Deserializer::GetSubFileInfo(const core::Variable &variable) const // PRIVATE template std::vector::BPInfo> -BP3Deserializer::BlocksInfoCommon( - const core::Variable &variable, - const std::vector &blocksIndexOffsets) const +BP3Deserializer::BlocksInfoCommon(const core::Variable &variable, + const std::vector &blocksIndexOffsets) const { std::vector::BPInfo> blocksInfo; blocksInfo.reserve(blocksIndexOffsets.size()); @@ -1173,10 +1074,9 @@ BP3Deserializer::BlocksInfoCommon( size_t position = blockIndexOffset; size_t irrelevant; - const Characteristics blockCharacteristics = - ReadElementIndexCharacteristics( - m_Metadata.m_Buffer, position, TypeTraits::type_enum, - irrelevant, false, m_Minifooter.IsLittleEndian); + const Characteristics blockCharacteristics = ReadElementIndexCharacteristics( + m_Metadata.m_Buffer, position, TypeTraits::type_enum, irrelevant, false, + m_Minifooter.IsLittleEndian); typename core::Variable::BPInfo blockInfo; blockInfo.Shape = blockCharacteristics.Shape; @@ -1203,8 +1103,7 @@ BP3Deserializer::BlocksInfoCommon( blockInfo.Min = blockCharacteristics.Statistics.Min; blockInfo.Max = blockCharacteristics.Statistics.Max; } - if (blockInfo.Shape.size() == 1 && - blockInfo.Shape.front() == LocalValueDim) + if (blockInfo.Shape.size() == 1 && blockInfo.Shape.front() == LocalValueDim) { blockInfo.Shape = Dims{blocksIndexOffsets.size()}; blockInfo.Count = Dims{1}; @@ -1213,8 +1112,7 @@ BP3Deserializer::BlocksInfoCommon( blockInfo.Max = blockCharacteristics.Statistics.Value; } // bp index starts at 1 - blockInfo.Step = - static_cast(blockCharacteristics.Statistics.Step - 1); + blockInfo.Step = static_cast(blockCharacteristics.Statistics.Step - 1); blockInfo.BlockID = n; blocksInfo.push_back(blockInfo); diff --git a/source/adios2/toolkit/format/bp/bp3/BP3Serializer.cpp b/source/adios2/toolkit/format/bp/bp3/BP3Serializer.cpp index 0b837c1375..91a15241df 100644 --- a/source/adios2/toolkit/format/bp/bp3/BP3Serializer.cpp +++ b/source/adios2/toolkit/format/bp/bp3/BP3Serializer.cpp @@ -33,9 +33,8 @@ BP3Serializer::BP3Serializer(helper::Comm const &comm) { } -void BP3Serializer::PutProcessGroupIndex( - const std::string &ioName, const std::string hostLanguage, - const std::vector &transportsTypes) noexcept +void BP3Serializer::PutProcessGroupIndex(const std::string &ioName, const std::string hostLanguage, + const std::vector &transportsTypes) noexcept { m_Profiler.Start("buffering"); std::vector &metadataBuffer = m_MetadataSet.PGIndex.Buffer; @@ -53,8 +52,7 @@ void BP3Serializer::PutProcessGroupIndex( PutNameRecord(ioName, metadataBuffer); // write if data is column major in metadata and data - const char columnMajor = - (helper::IsRowMajor(hostLanguage) == false) ? 'y' : 'n'; + const char columnMajor = (helper::IsRowMajor(hostLanguage) == false) ? 'y' : 'n'; helper::InsertToBuffer(metadataBuffer, &columnMajor); helper::CopyToBuffer(dataBuffer, dataPosition, &columnMajor); @@ -80,8 +78,8 @@ void BP3Serializer::PutProcessGroupIndex( helper::InsertU64(metadataBuffer, m_Data.m_AbsolutePosition); // Back to writing metadata pg index length (length of group) - const uint16_t metadataPGIndexLength = static_cast( - metadataBuffer.size() - metadataPGLengthPosition - 2); + const uint16_t metadataPGIndexLength = + static_cast(metadataBuffer.size() - metadataPGLengthPosition - 2); size_t backPosition = metadataPGLengthPosition; helper::CopyToBuffer(metadataBuffer, backPosition, &metadataPGIndexLength); @@ -103,8 +101,7 @@ void BP3Serializer::PutProcessGroupIndex( } // update absolute position - m_Data.m_AbsolutePosition += - dataPosition - m_MetadataSet.DataPGLengthPosition; + m_Data.m_AbsolutePosition += dataPosition - m_MetadataSet.DataPGLengthPosition; // pg vars count and position m_MetadataSet.DataPGVarsCount = 0; m_MetadataSet.DataPGVarsCountPosition = dataPosition; @@ -160,8 +157,8 @@ void BP3Serializer::CloseStream(core::IO &io, const bool addMetadata) m_Profiler.Stop("buffering"); } -void BP3Serializer::CloseStream(core::IO &io, size_t &metadataStart, - size_t &metadataCount, const bool addMetadata) +void BP3Serializer::CloseStream(core::IO &io, size_t &metadataStart, size_t &metadataCount, + const bool addMetadata) { m_Profiler.Start("buffering"); @@ -190,24 +187,21 @@ void BP3Serializer::ResetIndices() m_MetadataSet.VarsIndices.clear(); } -void BP3Serializer::AggregateCollectiveMetadata(helper::Comm const &comm, - BufferSTL &bufferSTL, +void BP3Serializer::AggregateCollectiveMetadata(helper::Comm const &comm, BufferSTL &bufferSTL, const bool inMetadataBuffer) { m_Profiler.Start("buffering"); m_Profiler.Start("meta_sort_merge"); - const std::vector indicesPosition = - AggregateCollectiveMetadataIndices(comm, bufferSTL); + const std::vector indicesPosition = AggregateCollectiveMetadataIndices(comm, bufferSTL); int rank = comm.Rank(); if (rank == 0) { PutMinifooter(static_cast(indicesPosition[0]), static_cast(indicesPosition[1]), - static_cast(indicesPosition[2]), - bufferSTL.m_Buffer, bufferSTL.m_Position, - inMetadataBuffer); + static_cast(indicesPosition[2]), bufferSTL.m_Buffer, + bufferSTL.m_Position, inMetadataBuffer); if (inMetadataBuffer) { @@ -236,18 +230,15 @@ void BP3Serializer::SerializeDataBuffer(core::IO &io) noexcept helper::CopyToBuffer(buffer, m_MetadataSet.DataPGVarsCountPosition, &m_MetadataSet.DataPGVarsCount); // without record itself and vars count - const uint64_t varsLength = - position - m_MetadataSet.DataPGVarsCountPosition - 8 - 4; - helper::CopyToBuffer(buffer, m_MetadataSet.DataPGVarsCountPosition, - &varsLength); + const uint64_t varsLength = position - m_MetadataSet.DataPGVarsCountPosition - 8 - 4; + helper::CopyToBuffer(buffer, m_MetadataSet.DataPGVarsCountPosition, &varsLength); // each attribute is only written to output once size_t attributesSizeInData = GetAttributesSizeInData(io); if (attributesSizeInData) { attributesSizeInData += 12; // count + length - m_Data.Resize(position + attributesSizeInData, - "when writing Attributes in rank=0\n"); + m_Data.Resize(position + attributesSizeInData, "when writing Attributes in rank=0\n"); PutAttributes(io); } @@ -261,49 +252,41 @@ void BP3Serializer::SerializeDataBuffer(core::IO &io) noexcept } // Finish writing pg group length without record itself - const uint64_t dataPGLength = - position - m_MetadataSet.DataPGLengthPosition - 8; - helper::CopyToBuffer(buffer, m_MetadataSet.DataPGLengthPosition, - &dataPGLength); + const uint64_t dataPGLength = position - m_MetadataSet.DataPGLengthPosition - 8; + helper::CopyToBuffer(buffer, m_MetadataSet.DataPGLengthPosition, &dataPGLength); m_MetadataSet.DataPGIsOpen = false; } -void BP3Serializer::SerializeMetadataInData(const bool updateAbsolutePosition, - const bool inData) +void BP3Serializer::SerializeMetadataInData(const bool updateAbsolutePosition, const bool inData) { - auto lf_SetIndexCountLength = - [](std::unordered_map &indices, - uint32_t &count, uint64_t &length) { - count = static_cast(indices.size()); - length = 0; - for (auto &indexPair : indices) // set each index length - { - auto &indexBuffer = indexPair.second.Buffer; - const uint32_t indexLength = - static_cast(indexBuffer.size() - 4); - size_t indexLengthPosition = 0; - helper::CopyToBuffer(indexBuffer, indexLengthPosition, - &indexLength); - - length += indexBuffer.size(); // overall length - } - }; + auto lf_SetIndexCountLength = [](std::unordered_map &indices, + uint32_t &count, uint64_t &length) { + count = static_cast(indices.size()); + length = 0; + for (auto &indexPair : indices) // set each index length + { + auto &indexBuffer = indexPair.second.Buffer; + const uint32_t indexLength = static_cast(indexBuffer.size() - 4); + size_t indexLengthPosition = 0; + helper::CopyToBuffer(indexBuffer, indexLengthPosition, &indexLength); - auto lf_FlattenIndices = - [](const uint32_t count, const uint64_t length, - const std::unordered_map &indices, - std::vector &buffer, size_t &position) { - helper::CopyToBuffer(buffer, position, &count); - helper::CopyToBuffer(buffer, position, &length); + length += indexBuffer.size(); // overall length + } + }; - for (const auto &indexPair : indices) // set each index length - { - const auto &indexBuffer = indexPair.second.Buffer; - helper::CopyToBuffer(buffer, position, indexBuffer.data(), - indexBuffer.size()); - } - }; + auto lf_FlattenIndices = [](const uint32_t count, const uint64_t length, + const std::unordered_map &indices, + std::vector &buffer, size_t &position) { + helper::CopyToBuffer(buffer, position, &count); + helper::CopyToBuffer(buffer, position, &length); + + for (const auto &indexPair : indices) // set each index length + { + const auto &indexBuffer = indexPair.second.Buffer; + helper::CopyToBuffer(buffer, position, indexBuffer.data(), indexBuffer.size()); + } + }; // Finish writing metadata counts and lengths // PG Index @@ -318,17 +301,16 @@ void BP3Serializer::SerializeMetadataInData(const bool updateAbsolutePosition, // attribute index count and length, and each index length uint32_t attributesCount = 0; uint64_t attributesLength = 0; - lf_SetIndexCountLength(m_MetadataSet.AttributesIndices, attributesCount, - attributesLength); + lf_SetIndexCountLength(m_MetadataSet.AttributesIndices, attributesCount, attributesLength); if (!inData) { return; } - const size_t footerSize = static_cast( - (pgLength + 16) + (varsLength + 12) + (attributesLength + 12) + - m_MetadataSet.MiniFooterSize); + const size_t footerSize = + static_cast((pgLength + 16) + (varsLength + 12) + (attributesLength + 12) + + m_MetadataSet.MiniFooterSize); auto &buffer = m_Data.m_Buffer; auto &position = m_Data.m_Position; @@ -336,8 +318,7 @@ void BP3Serializer::SerializeMetadataInData(const bool updateAbsolutePosition, // reserve data to fit metadata, // must replace with growth buffer strategy? - m_Data.Resize(position + footerSize, - " when writing metadata in bp data buffer"); + m_Data.Resize(position + footerSize, " when writing metadata in bp data buffer"); // write pg index helper::CopyToBuffer(buffer, position, &pgCount); @@ -346,21 +327,18 @@ void BP3Serializer::SerializeMetadataInData(const bool updateAbsolutePosition, static_cast(pgLength)); // Vars indices - lf_FlattenIndices(varsCount, varsLength, m_MetadataSet.VarsIndices, buffer, - position); + lf_FlattenIndices(varsCount, varsLength, m_MetadataSet.VarsIndices, buffer, position); // Attribute indices - lf_FlattenIndices(attributesCount, attributesLength, - m_MetadataSet.AttributesIndices, buffer, position); + lf_FlattenIndices(attributesCount, attributesLength, m_MetadataSet.AttributesIndices, buffer, + position); // getting absolute offset start, minifooter is 28 bytes for now const uint64_t pgIndexStart = static_cast(absolutePosition); - const uint64_t variablesIndexStart = - static_cast(pgIndexStart + (pgLength + 16)); + const uint64_t variablesIndexStart = static_cast(pgIndexStart + (pgLength + 16)); const uint64_t attributesIndexStart = static_cast(variablesIndexStart + (varsLength + 12)); - PutMinifooter(pgIndexStart, variablesIndexStart, attributesIndexStart, - buffer, position); + PutMinifooter(pgIndexStart, variablesIndexStart, attributesIndexStart, buffer, position); if (updateAbsolutePosition) { @@ -373,9 +351,8 @@ void BP3Serializer::SerializeMetadataInData(const bool updateAbsolutePosition, } } -std::vector -BP3Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, - BufferSTL &bufferSTL) +std::vector BP3Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, + BufferSTL &bufferSTL) { PERFSTUBS_SCOPED_TIMER_FUNC(); int rank = comm.Rank(); @@ -387,8 +364,7 @@ BP3Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, { PERFSTUBS_SCOPED_TIMER_FUNC(); // assumes that things are more or less balanced - m_PGRankIndices.reserve(m_MetadataSet.PGIndex.Buffer.size() * - static_cast(size)); + m_PGRankIndices.reserve(m_MetadataSet.PGIndex.Buffer.size() * static_cast(size)); m_PGRankIndices.resize(0); m_VariableRankIndices.clear(); @@ -399,8 +375,7 @@ BP3Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, } auto lf_IndicesSize = - [&](const std::unordered_map &indices) - -> size_t + [&](const std::unordered_map &indices) -> size_t { PERFSTUBS_SCOPED_TIMER_FUNC(); @@ -413,66 +388,53 @@ BP3Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, }; auto lf_SerializeIndices = - [&](const std::unordered_map &indices, - size_t &position) + [&](const std::unordered_map &indices, size_t &position) { PERFSTUBS_SCOPED_TIMER_FUNC(); for (const auto &indexPair : indices) { const auto &buffer = indexPair.second.Buffer; - helper::CopyToBuffer(m_SerializedIndices, position, buffer.data(), - buffer.size()); + helper::CopyToBuffer(m_SerializedIndices, position, buffer.data(), buffer.size()); } }; - auto lf_SerializeAllIndices = [&](helper::Comm const &comm, - const int rank) { + auto lf_SerializeAllIndices = [&](helper::Comm const &comm, const int rank) { PERFSTUBS_SCOPED_TIMER_FUNC(); const size_t pgIndicesSize = m_MetadataSet.PGIndex.Buffer.size(); - const size_t variablesIndicesSize = - lf_IndicesSize(m_MetadataSet.VarsIndices); - const size_t attributesIndicesSize = - lf_IndicesSize(m_MetadataSet.AttributesIndices); + const size_t variablesIndicesSize = lf_IndicesSize(m_MetadataSet.VarsIndices); + const size_t attributesIndicesSize = lf_IndicesSize(m_MetadataSet.AttributesIndices); // first pre-allocate - const size_t serializedIndicesSize = 8 * 4 + pgIndicesSize + - variablesIndicesSize + - attributesIndicesSize; + const size_t serializedIndicesSize = + 8 * 4 + pgIndicesSize + variablesIndicesSize + attributesIndicesSize; m_SerializedIndices.reserve(serializedIndicesSize + 4); m_SerializedIndices.resize(serializedIndicesSize + 4); const uint32_t rank32 = static_cast(rank); const uint64_t size64 = static_cast(serializedIndicesSize); - const uint64_t variablesIndexOffset = - static_cast(pgIndicesSize + 36); + const uint64_t variablesIndexOffset = static_cast(pgIndicesSize + 36); const uint64_t attributesIndexOffset = static_cast(pgIndicesSize + 36 + variablesIndicesSize); size_t position = 0; helper::CopyToBuffer(m_SerializedIndices, position, &rank32); helper::CopyToBuffer(m_SerializedIndices, position, &size64); - helper::CopyToBuffer(m_SerializedIndices, position, - &variablesIndexOffset); - helper::CopyToBuffer(m_SerializedIndices, position, - &attributesIndexOffset); - helper::CopyToBuffer(m_SerializedIndices, position, - &m_MetadataSet.DataPGCount); - - helper::CopyToBuffer(m_SerializedIndices, position, - m_MetadataSet.PGIndex.Buffer.data(), + helper::CopyToBuffer(m_SerializedIndices, position, &variablesIndexOffset); + helper::CopyToBuffer(m_SerializedIndices, position, &attributesIndexOffset); + helper::CopyToBuffer(m_SerializedIndices, position, &m_MetadataSet.DataPGCount); + + helper::CopyToBuffer(m_SerializedIndices, position, m_MetadataSet.PGIndex.Buffer.data(), m_MetadataSet.PGIndex.Buffer.size()); lf_SerializeIndices(m_MetadataSet.VarsIndices, position); lf_SerializeIndices(m_MetadataSet.AttributesIndices, position); }; auto lf_DeserializeIndices = - [&](std::unordered_map> - &deserialized, - const int rankSource, const std::vector &serialized, - const size_t position, const size_t endPosition, - const bool isRankConstant) + [&](std::unordered_map> &deserialized, + const int rankSource, const std::vector &serialized, const size_t position, + const size_t endPosition, const bool isRankConstant) { PERFSTUBS_SCOPED_TIMER_FUNC(); @@ -480,8 +442,8 @@ BP3Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, while (localPosition < endPosition) { size_t indexPosition = localPosition; - const ElementIndexHeader header = ReadElementIndexHeader( - serialized, indexPosition, helper::IsLittleEndian()); + const ElementIndexHeader header = + ReadElementIndexHeader(serialized, indexPosition, helper::IsLittleEndian()); const size_t bufferSize = static_cast(header.Length) + 4; if (isRankConstant && deserialized.count(header.Name) == 1) @@ -489,8 +451,7 @@ BP3Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, localPosition += bufferSize; continue; } - std::vector *deserializedIndexes = - nullptr; + std::vector *deserializedIndexes = nullptr; auto search = deserialized.find(header.Name); if (search == deserialized.end()) { @@ -500,12 +461,9 @@ BP3Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, std::lock_guard lock(m_Mutex); deserializedIndexes = &(deserialized - .emplace( - std::piecewise_construct, - std::forward_as_tuple(header.Name), - std::forward_as_tuple( - size, SerialElementIndex(header.MemberID, - bufferSize))) + .emplace(std::piecewise_construct, std::forward_as_tuple(header.Name), + std::forward_as_tuple( + size, SerialElementIndex(header.MemberID, bufferSize))) .first->second); } } @@ -516,17 +474,14 @@ BP3Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, deserializedIndexes = &(search->second); } - SerialElementIndex &index = - deserializedIndexes->at(static_cast(rankSource)); - helper::InsertToBuffer(index.Buffer, &serialized[localPosition], - bufferSize); + SerialElementIndex &index = deserializedIndexes->at(static_cast(rankSource)); + helper::InsertToBuffer(index.Buffer, &serialized[localPosition], bufferSize); localPosition += bufferSize; } }; - auto lf_DeserializeAllIndices = - [&](const int rankSource, const std::vector headerInfo, - const std::vector &serialized, const size_t position) + auto lf_DeserializeAllIndices = [&](const int rankSource, const std::vector headerInfo, + const std::vector &serialized, const size_t position) { PERFSTUBS_SCOPED_TIMER_FUNC(); @@ -540,27 +495,25 @@ BP3Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, // first deserialize pg indices { std::lock_guard lock(m_Mutex); - helper::InsertToBuffer(m_PGRankIndices, &serialized[localPosition], - pgIndexLength); + helper::InsertToBuffer(m_PGRankIndices, &serialized[localPosition], pgIndexLength); } // deserialize variable indices localPosition = variablesIndexOffset; size_t endPosition = attributesIndexOffset; - lf_DeserializeIndices(m_VariableRankIndices, rankSource, serialized, - localPosition, endPosition, false); + lf_DeserializeIndices(m_VariableRankIndices, rankSource, serialized, localPosition, + endPosition, false); // deserialize attributes indices localPosition = attributesIndexOffset; endPosition = rankIndicesSize + 4 + position; // attributes are constant and unique across ranks - lf_DeserializeIndices(m_AttributesRankIndices, rankSource, serialized, - localPosition, endPosition, true); + lf_DeserializeIndices(m_AttributesRankIndices, rankSource, serialized, localPosition, + endPosition, true); }; auto lf_SortMergeIndices = - [&](const std::unordered_map> + [&](const std::unordered_map> &deserializedIndices) { PERFSTUBS_SCOPED_TIMER_FUNC(); auto &position = bufferSTL.m_Position; @@ -568,16 +521,14 @@ BP3Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, size_t countPosition = position; - const uint32_t totalCountU32 = - static_cast(deserializedIndices.size()); + const uint32_t totalCountU32 = static_cast(deserializedIndices.size()); helper::CopyToBuffer(buffer, countPosition, &totalCountU32); position += 12; // skip for length MergeSerializeIndices(deserializedIndices, comm, bufferSTL); // Write length - const uint64_t totalLengthU64 = - static_cast(position - countPosition - 8); + const uint64_t totalLengthU64 = static_cast(position - countPosition - 8); helper::CopyToBuffer(buffer, countPosition, &totalLengthU64); }; @@ -590,25 +541,22 @@ BP3Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, size_t countPosition = bufferSTL.m_Position; - comm.GathervVectors(m_SerializedIndices, bufferSTL.m_Buffer, - bufferSTL.m_Position, 0); + comm.GathervVectors(m_SerializedIndices, bufferSTL.m_Buffer, bufferSTL.m_Position, 0); // use bufferSTL (will resize) to GatherV const size_t extraSize = 16 + 12 + 12 + m_MetadataSet.MiniFooterSize; try { - bufferSTL.m_Buffer.reserve(bufferSTL.m_Position + - extraSize); // to avoid power of 2 growth + bufferSTL.m_Buffer.reserve(bufferSTL.m_Position + extraSize); // to avoid power of 2 growth bufferSTL.m_Buffer.resize(bufferSTL.m_Position + extraSize); } catch (...) { helper::ThrowNested( - "Toolkit::Format", "bp::bp3::BP3Serializer", - "AggregateCollectiveMetadataIndices", - "buffer overflow when resizing to " + - std::to_string(bufferSTL.m_Position + extraSize) + " bytes"); + "Toolkit::Format", "bp::bp3::BP3Serializer", "AggregateCollectiveMetadataIndices", + "buffer overflow when resizing to " + std::to_string(bufferSTL.m_Position + extraSize) + + " bytes"); } // deserialize, it's all local inside rank 0 @@ -627,19 +575,16 @@ BP3Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, { size_t localPosition = serializedPosition; - const int rankSource = - static_cast(helper::ReadValue( - serialized, localPosition, isLittleEndian)); + const int rankSource = static_cast( + helper::ReadValue(serialized, localPosition, isLittleEndian)); for (auto i = 0; i < 4; ++i) { - headerInfo[i] = - static_cast(helper::ReadValue( - serialized, localPosition, isLittleEndian)); + headerInfo[i] = static_cast( + helper::ReadValue(serialized, localPosition, isLittleEndian)); } - lf_DeserializeAllIndices(rankSource, headerInfo, serialized, - serializedPosition); + lf_DeserializeAllIndices(rankSource, headerInfo, serialized, serializedPosition); serializedPosition += headerInfo[0] + 4; } } @@ -654,13 +599,11 @@ BP3Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, position = countPosition; // back to pg count position const uint64_t pgCount64 = static_cast(pgCount); - const uint64_t pgLength64 = - static_cast(m_PGRankIndices.size()); + const uint64_t pgLength64 = static_cast(m_PGRankIndices.size()); helper::CopyToBuffer(buffer, position, &pgCount64); helper::CopyToBuffer(buffer, position, &pgLength64); - helper::CopyToBuffer(buffer, position, m_PGRankIndices.data(), - m_PGRankIndices.size()); + helper::CopyToBuffer(buffer, position, m_PGRankIndices.data(), m_PGRankIndices.size()); indexPositions[1] = bufferSTL.m_AbsolutePosition + position; lf_SortMergeIndices(m_VariableRankIndices); @@ -671,31 +614,30 @@ BP3Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, return indexPositions; } -#define declare_template_instantiation(T) \ - void BP3Serializer::DoPutAttributeInData( \ - const core::Attribute &attribute, Stats &stats) noexcept \ - { \ - PutAttributeInDataCommon(attribute, stats); \ +#define declare_template_instantiation(T) \ + void BP3Serializer::DoPutAttributeInData(const core::Attribute &attribute, \ + Stats &stats) noexcept \ + { \ + PutAttributeInDataCommon(attribute, stats); \ } ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation -#define declare_template_instantiation(T) \ - template void BP3Serializer::PutVariableMetadata( \ - const core::Variable &, const typename core::Variable::BPInfo &, \ - const bool, typename core::Variable::Span *) noexcept; \ - \ - template void BP3Serializer::PutVariablePayload( \ - const core::Variable &, const typename core::Variable::BPInfo &, \ - const bool, typename core::Variable::Span *) noexcept; +#define declare_template_instantiation(T) \ + template void BP3Serializer::PutVariableMetadata( \ + const core::Variable &, const typename core::Variable::BPInfo &, const bool, \ + typename core::Variable::Span *) noexcept; \ + \ + template void BP3Serializer::PutVariablePayload( \ + const core::Variable &, const typename core::Variable::BPInfo &, const bool, \ + typename core::Variable::Span *) noexcept; ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation -#define declare_template_instantiation(T) \ - template void BP3Serializer::PutSpanMetadata( \ - const core::Variable &, \ - const typename core::Variable::Span &) noexcept; +#define declare_template_instantiation(T) \ + template void BP3Serializer::PutSpanMetadata( \ + const core::Variable &, const typename core::Variable::Span &) noexcept; ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation diff --git a/source/adios2/toolkit/format/bp/bp3/BP3Serializer.h b/source/adios2/toolkit/format/bp/bp3/BP3Serializer.h index 50b20958a3..9e69884cbe 100644 --- a/source/adios2/toolkit/format/bp/bp3/BP3Serializer.h +++ b/source/adios2/toolkit/format/bp/bp3/BP3Serializer.h @@ -46,30 +46,27 @@ class BP3Serializer : public BP3Base, public BPSerializer * @param hostLanguage from ADIOS class passed to IO * @param transportsTypes passed to get list of transport "bp methods" */ - void PutProcessGroupIndex( - const std::string &ioName, const std::string hostLanguage, - const std::vector &transportsTypes) noexcept; + void PutProcessGroupIndex(const std::string &ioName, const std::string hostLanguage, + const std::vector &transportsTypes) noexcept; /** * Put in buffer metadata for a given variable */ template - void PutVariableMetadata( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const bool sourceRowMajor = true, - typename core::Variable::Span *span = nullptr) noexcept; + void PutVariableMetadata(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const bool sourceRowMajor = true, + typename core::Variable::Span *span = nullptr) noexcept; /** * Put in buffer variable payload. Expensive part. * @param variable payload input from m_PutValues */ template - void PutVariablePayload( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const bool sourceRowMajor = true, - typename core::Variable::Span *span = nullptr) noexcept; + void PutVariablePayload(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const bool sourceRowMajor = true, + typename core::Variable::Span *span = nullptr) noexcept; template void PutSpanMetadata(const core::Variable &variable, @@ -113,8 +110,7 @@ class BP3Serializer : public BP3Base, public BPSerializer * @param inMetadataBuffer collective metadata from absolute rank = 0, else * from aggregators */ - void AggregateCollectiveMetadata(helper::Comm const &comm, - BufferSTL &bufferSTL, + void AggregateCollectiveMetadata(helper::Comm const &comm, BufferSTL &bufferSTL, const bool inMetadataBuffer); private: @@ -124,8 +120,7 @@ class BP3Serializer : public BP3Base, public BPSerializer /** aggregate pg rank indices */ std::vector m_PGRankIndices; /** deserialized variable indices per rank (vector index) */ - std::unordered_map> - m_VariableRankIndices; + std::unordered_map> m_VariableRankIndices; /** deserialized attribute indices per rank (vector index) */ std::unordered_map> m_AttributesRankIndices; @@ -138,8 +133,7 @@ class BP3Serializer : public BP3Base, public BPSerializer * @return attribute length position */ template - size_t PutAttributeHeaderInData(const core::Attribute &attribute, - Stats &stats) noexcept; + size_t PutAttributeHeaderInData(const core::Attribute &attribute, Stats &stats) noexcept; /** * Called from WriteAttributeInData specialized functions @@ -148,20 +142,16 @@ class BP3Serializer : public BP3Base, public BPSerializer * @param attributeLengthPosition */ template - void - PutAttributeLengthInData(const core::Attribute &attribute, - Stats &stats, - const size_t attributeLengthPosition) noexcept; - -#define declare_template_instantiation(T) \ - void DoPutAttributeInData(const core::Attribute &attribute, \ - Stats &stats) noexcept final; + void PutAttributeLengthInData(const core::Attribute &attribute, Stats &stats, + const size_t attributeLengthPosition) noexcept; + +#define declare_template_instantiation(T) \ + void DoPutAttributeInData(const core::Attribute &attribute, Stats &stats) noexcept final; ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation template - void PutAttributeInDataCommon(const core::Attribute &attribute, - Stats &stats) noexcept; + void PutAttributeInDataCommon(const core::Attribute &attribute, Stats &stats) noexcept; /** * Get variable statistics @@ -170,50 +160,44 @@ class BP3Serializer : public BP3Base, public BPSerializer * @return stats BP3 Stats */ template - Stats GetBPStats(const bool singleValue, - const typename core::Variable::BPInfo &blockInfo, + Stats GetBPStats(const bool singleValue, const typename core::Variable::BPInfo &blockInfo, const bool isRowMajor) noexcept; template - void PutVariableMetadataInData( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const Stats &stats, - const typename core::Variable::Span *span = nullptr) noexcept; + void PutVariableMetadataInData(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, + const typename core::Variable::Span *span = nullptr) noexcept; template - void PutVariableMetadataInIndex( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const Stats &stats, const bool isNew, - BPBase::SerialElementIndex &index, - typename core::Variable::Span *span) noexcept; + void PutVariableMetadataInIndex(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, const bool isNew, + BPBase::SerialElementIndex &index, + typename core::Variable::Span *span) noexcept; template - void PutVariableCharacteristics( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const Stats &stats, std::vector &buffer, - typename core::Variable::Span *span) noexcept; + void PutVariableCharacteristics(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, std::vector &buffer, + typename core::Variable::Span *span) noexcept; template - void PutVariableCharacteristics( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const Stats &stats, std::vector &buffer, - size_t &position) noexcept; + void PutVariableCharacteristics(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, std::vector &buffer, + size_t &position) noexcept; /** Writes min max */ template void PutBoundsRecord(const bool singleValue, const Stats &stats, - uint8_t &characteristicsCounter, - std::vector &buffer) noexcept; + uint8_t &characteristicsCounter, std::vector &buffer) noexcept; /** Overloaded version for data buffer */ template void PutBoundsRecord(const bool singleValue, const Stats &stats, - uint8_t &characteristicsCounter, - std::vector &buffer, size_t &position) noexcept; + uint8_t &characteristicsCounter, std::vector &buffer, + size_t &position) noexcept; /** * Wraps up the data buffer serialization in m_HeapBuffer and fills the pg @@ -231,9 +215,8 @@ class BP3Serializer : public BP3Base, public BPSerializer * @param inMetadataBuffer * @return contains indices positions in buffer */ - std::vector - AggregateCollectiveMetadataIndices(helper::Comm const &comm, - BufferSTL &bufferSTL); + std::vector AggregateCollectiveMetadataIndices(helper::Comm const &comm, + BufferSTL &bufferSTL); }; } // end namespace format diff --git a/source/adios2/toolkit/format/bp/bp3/BP3Serializer.tcc b/source/adios2/toolkit/format/bp/bp3/BP3Serializer.tcc index 7a775c1612..d666955bd1 100644 --- a/source/adios2/toolkit/format/bp/bp3/BP3Serializer.tcc +++ b/source/adios2/toolkit/format/bp/bp3/BP3Serializer.tcc @@ -24,10 +24,10 @@ namespace format { template -void BP3Serializer::PutVariableMetadata( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const bool sourceRowMajor, typename core::Variable::Span *span) noexcept +void BP3Serializer::PutVariableMetadata(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const bool sourceRowMajor, + typename core::Variable::Span *span) noexcept { auto lf_SetOffset = [&](uint64_t &offset) { if (m_Aggregator.m_IsActive && !m_Aggregator.m_IsAggregator) @@ -36,20 +36,18 @@ void BP3Serializer::PutVariableMetadata( } else { - offset = static_cast(m_Data.m_AbsolutePosition + - m_PreDataFileLength); + offset = static_cast(m_Data.m_AbsolutePosition + m_PreDataFileLength); } }; m_Profiler.Start("buffering"); - Stats stats = - GetBPStats(variable.m_SingleValue, blockInfo, sourceRowMajor); + Stats stats = GetBPStats(variable.m_SingleValue, blockInfo, sourceRowMajor); // Get new Index or point to existing index bool isNew = true; // flag to check if variable is new - SerialElementIndex &variableIndex = GetSerialElementIndex( - variable.m_Name, m_MetadataSet.VarsIndices, isNew); + SerialElementIndex &variableIndex = + GetSerialElementIndex(variable.m_Name, m_MetadataSet.VarsIndices, isNew); stats.MemberID = variableIndex.MemberID; lf_SetOffset(stats.Offset); @@ -61,18 +59,17 @@ void BP3Serializer::PutVariableMetadata( } // write to metadata index - PutVariableMetadataInIndex(variable, blockInfo, stats, isNew, variableIndex, - span); + PutVariableMetadataInIndex(variable, blockInfo, stats, isNew, variableIndex, span); ++m_MetadataSet.DataPGVarsCount; m_Profiler.Stop("buffering"); } template -inline void BP3Serializer::PutVariablePayload( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const bool sourceRowMajor, typename core::Variable::Span *span) noexcept +inline void BP3Serializer::PutVariablePayload(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const bool sourceRowMajor, + typename core::Variable::Span *span) noexcept { m_Profiler.Start("buffering"); if (span != nullptr) @@ -80,8 +77,7 @@ inline void BP3Serializer::PutVariablePayload( const size_t blockSize = helper::GetTotalSize(blockInfo.Count); if (span->m_Value != T{}) { - T *itBegin = reinterpret_cast(m_Data.m_Buffer.data() + - m_Data.m_Position); + T *itBegin = reinterpret_cast(m_Data.m_Buffer.data() + m_Data.m_Position); // TODO: does std::fill_n have a bug in gcc or due to optimizations // this is impossible due to memory alignment? This seg faults in @@ -114,38 +110,33 @@ inline void BP3Serializer::PutVariablePayload( } template -void BP3Serializer::PutSpanMetadata( - const core::Variable &variable, - const typename core::Variable::Span &span) noexcept +void BP3Serializer::PutSpanMetadata(const core::Variable &variable, + const typename core::Variable::Span &span) noexcept { if (m_Parameters.StatsLevel > 0) { // Get Min/Max from populated data m_Profiler.Start("minmax"); T min, max; - helper::GetMinMaxThreads(span.Data(), span.Size(), min, max, - m_Parameters.Threads, variable.m_MemSpace); + helper::GetMinMaxThreads(span.Data(), span.Size(), min, max, m_Parameters.Threads, + variable.m_MemSpace); m_Profiler.Stop("minmax"); // Put min/max in variable index - SerialElementIndex &variableIndex = - m_MetadataSet.VarsIndices.at(variable.m_Name); + SerialElementIndex &variableIndex = m_MetadataSet.VarsIndices.at(variable.m_Name); auto &buffer = variableIndex.Buffer; const size_t minPosition = span.m_MinMaxMetadataPositions.first; const size_t maxPosition = span.m_MinMaxMetadataPositions.second; - std::copy(&min, &min + 1, - reinterpret_cast(buffer.data() + minPosition)); - std::copy(&max, &max + 1, - reinterpret_cast(buffer.data() + maxPosition)); + std::copy(&min, &min + 1, reinterpret_cast(buffer.data() + minPosition)); + std::copy(&max, &max + 1, reinterpret_cast(buffer.data() + maxPosition)); } } // PRIVATE template -size_t -BP3Serializer::PutAttributeHeaderInData(const core::Attribute &attribute, - Stats &stats) noexcept +size_t BP3Serializer::PutAttributeHeaderInData(const core::Attribute &attribute, + Stats &stats) noexcept { auto &buffer = m_Data.m_Buffer; auto &position = m_Data.m_Position; @@ -166,9 +157,8 @@ BP3Serializer::PutAttributeHeaderInData(const core::Attribute &attribute, } template -void BP3Serializer::PutAttributeLengthInData( - const core::Attribute &attribute, Stats &stats, - const size_t attributeLengthPosition) noexcept +void BP3Serializer::PutAttributeLengthInData(const core::Attribute &attribute, Stats &stats, + const size_t attributeLengthPosition) noexcept { auto &buffer = m_Data.m_Buffer; auto &position = m_Data.m_Position; @@ -183,12 +173,10 @@ void BP3Serializer::PutAttributeLengthInData( } template <> -inline void BP3Serializer::PutAttributeInDataCommon( - const core::Attribute &attribute, - Stats &stats) noexcept +inline void BP3Serializer::PutAttributeInDataCommon(const core::Attribute &attribute, + Stats &stats) noexcept { - const size_t attributeLengthPosition = - PutAttributeHeaderInData(attribute, stats); + const size_t attributeLengthPosition = PutAttributeHeaderInData(attribute, stats); auto &buffer = m_Data.m_Buffer; auto &position = m_Data.m_Position; @@ -206,11 +194,9 @@ inline void BP3Serializer::PutAttributeInDataCommon( if (dataType == type_string) { - const uint32_t dataSize = - static_cast(attribute.m_DataSingleValue.size()); + const uint32_t dataSize = static_cast(attribute.m_DataSingleValue.size()); helper::CopyToBuffer(buffer, position, &dataSize); - helper::CopyToBuffer(buffer, position, - attribute.m_DataSingleValue.data(), + helper::CopyToBuffer(buffer, position, attribute.m_DataSingleValue.data(), attribute.m_DataSingleValue.size()); } else if (dataType == type_string_array) @@ -226,8 +212,7 @@ inline void BP3Serializer::PutAttributeInDataCommon( const uint32_t elementSize = static_cast(element.size()); helper::CopyToBuffer(buffer, position, &elementSize); - helper::CopyToBuffer(buffer, position, element.data(), - element.size()); + helper::CopyToBuffer(buffer, position, element.data(), element.size()); } } @@ -235,11 +220,10 @@ inline void BP3Serializer::PutAttributeInDataCommon( } template -void BP3Serializer::PutAttributeInDataCommon( - const core::Attribute &attribute, Stats &stats) noexcept +void BP3Serializer::PutAttributeInDataCommon(const core::Attribute &attribute, + Stats &stats) noexcept { - const size_t attributeLengthPosition = - PutAttributeHeaderInData(attribute, stats); + const size_t attributeLengthPosition = PutAttributeHeaderInData(attribute, stats); auto &buffer = m_Data.m_Buffer; auto &position = m_Data.m_Position; @@ -251,8 +235,7 @@ void BP3Serializer::PutAttributeInDataCommon( // here record payload offset stats.PayloadOffset = absolutePosition + position - attributeLengthPosition; - const uint32_t dataSize = - static_cast(attribute.m_Elements * sizeof(T)); + const uint32_t dataSize = static_cast(attribute.m_Elements * sizeof(T)); helper::CopyToBuffer(buffer, position, &dataSize); if (attribute.m_IsSingleValue) // single value @@ -261,18 +244,17 @@ void BP3Serializer::PutAttributeInDataCommon( } else // array { - helper::CopyToBuffer(buffer, position, attribute.m_DataArray.data(), - attribute.m_Elements); + helper::CopyToBuffer(buffer, position, attribute.m_DataArray.data(), attribute.m_Elements); } PutAttributeLengthInData(attribute, stats, attributeLengthPosition); } template <> -inline BP3Serializer::Stats BP3Serializer::GetBPStats( - const bool /*singleValue*/, - const typename core::Variable::BPInfo & /*blockInfo*/, - const bool /*isRowMajor*/) noexcept +inline BP3Serializer::Stats +BP3Serializer::GetBPStats(const bool /*singleValue*/, + const typename core::Variable::BPInfo & /*blockInfo*/, + const bool /*isRowMajor*/) noexcept { Stats stats; stats.Step = m_MetadataSet.TimeStep; @@ -311,17 +293,14 @@ BP3Serializer::GetBPStats(const bool singleValue, m_Profiler.Start("minmax"); if (blockInfo.MemoryStart.empty()) { - const std::size_t valuesSize = - helper::GetTotalSize(blockInfo.Count); - helper::GetMinMaxThreads(blockInfo.Data, valuesSize, stats.Min, - stats.Max, m_Parameters.Threads, - blockInfo.MemSpace); + const std::size_t valuesSize = helper::GetTotalSize(blockInfo.Count); + helper::GetMinMaxThreads(blockInfo.Data, valuesSize, stats.Min, stats.Max, + m_Parameters.Threads, blockInfo.MemSpace); } else // non-contiguous memory min/max { - helper::GetMinMaxSelection(blockInfo.Data, blockInfo.MemoryCount, - blockInfo.MemoryStart, blockInfo.Count, - isRowMajor, stats.Min, stats.Max, + helper::GetMinMaxSelection(blockInfo.Data, blockInfo.MemoryCount, blockInfo.MemoryStart, + blockInfo.Count, isRowMajor, stats.Min, stats.Max, blockInfo.MemSpace); } m_Profiler.Stop("minmax"); @@ -331,10 +310,10 @@ BP3Serializer::GetBPStats(const bool singleValue, } template -void BP3Serializer::PutVariableMetadataInData( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, const Stats &stats, - const typename core::Variable::Span *span) noexcept +void BP3Serializer::PutVariableMetadataInData(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, + const typename core::Variable::Span *span) noexcept { auto &buffer = m_Data.m_Buffer; auto &position = m_Data.m_Position; @@ -363,8 +342,7 @@ void BP3Serializer::PutVariableMetadataInData( uint16_t dimensionsLength = 27 * dimensions; helper::CopyToBuffer(buffer, position, &dimensionsLength); // length - PutDimensionsRecord(variable.m_Count, variable.m_Shape, variable.m_Start, - buffer, position); + PutDimensionsRecord(variable.m_Count, variable.m_Shape, variable.m_Start, buffer, position); // CHARACTERISTICS PutVariableCharacteristics(variable, blockInfo, stats, buffer, position); @@ -391,8 +369,7 @@ void BP3Serializer::PutVariableMetadataInData( // Back to varLength including payload size and pad // not need to remove its own size (8) from length from bpdump const uint64_t varLength = static_cast( - position - varLengthPosition + - helper::PayloadSize(blockInfo.Data, blockInfo.Count)); + position - varLengthPosition + helper::PayloadSize(blockInfo.Data, blockInfo.Count)); size_t backPosition = varLengthPosition; helper::CopyToBuffer(buffer, backPosition, &varLength); @@ -403,8 +380,7 @@ void BP3Serializer::PutVariableMetadataInData( template <> inline void BP3Serializer::PutVariableMetadataInData( const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const Stats &stats, + const typename core::Variable::BPInfo &blockInfo, const Stats &stats, const typename core::Variable::Span * /*span*/) noexcept { auto &buffer = m_Data.m_Buffer; @@ -432,16 +408,14 @@ inline void BP3Serializer::PutVariableMetadataInData( uint16_t dimensionsLength = 27 * dimensions; helper::CopyToBuffer(buffer, position, &dimensionsLength); // length - PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, - buffer, position); + PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, buffer, position); position += 5; // skipping characteristics // Back to varLength including payload size // not need to remove its own size (8) from length from bpdump const uint64_t varLength = static_cast( - position - varLengthPosition + - helper::PayloadSize(blockInfo.Data, blockInfo.Count)); + position - varLengthPosition + helper::PayloadSize(blockInfo.Data, blockInfo.Count)); size_t backPosition = varLengthPosition; helper::CopyToBuffer(buffer, backPosition, &varLength); @@ -450,11 +424,11 @@ inline void BP3Serializer::PutVariableMetadataInData( } template -void BP3Serializer::PutVariableMetadataInIndex( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, const Stats &stats, - const bool isNew, SerialElementIndex &index, - typename core::Variable::Span *span) noexcept +void BP3Serializer::PutVariableMetadataInIndex(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, const bool isNew, + SerialElementIndex &index, + typename core::Variable::Span *span) noexcept { auto &buffer = index.Buffer; @@ -491,33 +465,27 @@ void BP3Serializer::PutVariableMetadataInIndex( } template -void BP3Serializer::PutBoundsRecord(const bool singleValue, - const Stats &stats, +void BP3Serializer::PutBoundsRecord(const bool singleValue, const Stats &stats, uint8_t &characteristicsCounter, std::vector &buffer) noexcept { if (singleValue) { - PutCharacteristicRecord(characteristic_value, characteristicsCounter, - stats.Min, buffer); + PutCharacteristicRecord(characteristic_value, characteristicsCounter, stats.Min, buffer); } else { if (m_Parameters.StatsLevel > 0) // default verbose { - PutCharacteristicRecord(characteristic_min, characteristicsCounter, - stats.Min, buffer); - PutCharacteristicRecord(characteristic_max, characteristicsCounter, - stats.Max, buffer); + PutCharacteristicRecord(characteristic_min, characteristicsCounter, stats.Min, buffer); + PutCharacteristicRecord(characteristic_max, characteristicsCounter, stats.Max, buffer); } } } template -void BP3Serializer::PutBoundsRecord(const bool singleValue, - const Stats &stats, - uint8_t &characteristicsCounter, - std::vector &buffer, +void BP3Serializer::PutBoundsRecord(const bool singleValue, const Stats &stats, + uint8_t &characteristicsCounter, std::vector &buffer, size_t &position) noexcept { if (singleValue) @@ -534,11 +502,11 @@ void BP3Serializer::PutBoundsRecord(const bool singleValue, { if (m_Parameters.StatsLevel > 0) // default min and max only { - PutCharacteristicRecord(characteristic_min, characteristicsCounter, - stats.Min, buffer, position); + PutCharacteristicRecord(characteristic_min, characteristicsCounter, stats.Min, buffer, + position); - PutCharacteristicRecord(characteristic_max, characteristicsCounter, - stats.Max, buffer, position); + PutCharacteristicRecord(characteristic_max, characteristicsCounter, stats.Max, buffer, + position); } } } @@ -546,20 +514,18 @@ void BP3Serializer::PutBoundsRecord(const bool singleValue, template <> inline void BP3Serializer::PutVariableCharacteristics( const core::Variable &variable, - const core::Variable::BPInfo &blockInfo, - const Stats &stats, std::vector &buffer, - typename core::Variable::Span * /*span*/) noexcept + const core::Variable::BPInfo &blockInfo, const Stats &stats, + std::vector &buffer, typename core::Variable::Span * /*span*/) noexcept { const size_t characteristicsCountPosition = buffer.size(); // skip characteristics count(1) + length (4) buffer.insert(buffer.end(), 5, '\0'); uint8_t characteristicsCounter = 0; - PutCharacteristicRecord(characteristic_time_index, characteristicsCounter, - stats.Step, buffer); + PutCharacteristicRecord(characteristic_time_index, characteristicsCounter, stats.Step, buffer); - PutCharacteristicRecord(characteristic_file_index, characteristicsCounter, - stats.FileIndex, buffer); + PutCharacteristicRecord(characteristic_file_index, characteristicsCounter, stats.FileIndex, + buffer); uint8_t characteristicID = characteristic_value; helper::InsertToBuffer(buffer, &characteristicID); @@ -572,16 +538,13 @@ inline void BP3Serializer::PutVariableCharacteristics( helper::InsertToBuffer(buffer, &dimensions); // count const uint16_t dimensionsLength = static_cast(24 * dimensions); helper::InsertToBuffer(buffer, &dimensionsLength); // length - PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, - buffer); + PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, buffer); ++characteristicsCounter; - PutCharacteristicRecord(characteristic_offset, characteristicsCounter, - stats.Offset, buffer); + PutCharacteristicRecord(characteristic_offset, characteristicsCounter, stats.Offset, buffer); - PutCharacteristicRecord(characteristic_payload_offset, - characteristicsCounter, stats.PayloadOffset, - buffer); + PutCharacteristicRecord(characteristic_payload_offset, characteristicsCounter, + stats.PayloadOffset, buffer); // END OF CHARACTERISTICS @@ -591,18 +554,18 @@ inline void BP3Serializer::PutVariableCharacteristics( &characteristicsCounter); // count (1) // remove its own length (4) + characteristic counter (1) - const uint32_t characteristicsLength = static_cast( - buffer.size() - characteristicsCountPosition - 4 - 1); + const uint32_t characteristicsLength = + static_cast(buffer.size() - characteristicsCountPosition - 4 - 1); helper::CopyToBuffer(buffer, backPosition, &characteristicsLength); // length } template -void BP3Serializer::PutVariableCharacteristics( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, const Stats &stats, - std::vector &buffer, typename core::Variable::Span *span) noexcept +void BP3Serializer::PutVariableCharacteristics(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, std::vector &buffer, + typename core::Variable::Span *span) noexcept { // going back at the end const size_t characteristicsCountPosition = buffer.size(); @@ -611,23 +574,20 @@ void BP3Serializer::PutVariableCharacteristics( uint8_t characteristicsCounter = 0; // DIMENSIONS - PutCharacteristicRecord(characteristic_time_index, characteristicsCounter, - stats.Step, buffer); + PutCharacteristicRecord(characteristic_time_index, characteristicsCounter, stats.Step, buffer); - PutCharacteristicRecord(characteristic_file_index, characteristicsCounter, - stats.FileIndex, buffer); + PutCharacteristicRecord(characteristic_file_index, characteristicsCounter, stats.FileIndex, + buffer); if (blockInfo.Data != nullptr || span != nullptr) { if (m_Parameters.StatsLevel > 0 && span != nullptr) { span->m_MinMaxMetadataPositions.first = buffer.size() + 1; - span->m_MinMaxMetadataPositions.second = - buffer.size() + 2 + sizeof(T); + span->m_MinMaxMetadataPositions.second = buffer.size() + 2 + sizeof(T); } - PutBoundsRecord(variable.m_SingleValue, stats, characteristicsCounter, - buffer); + PutBoundsRecord(variable.m_SingleValue, stats, characteristicsCounter, buffer); } uint8_t characteristicID = characteristic_dimensions; @@ -636,22 +596,18 @@ void BP3Serializer::PutVariableCharacteristics( helper::InsertToBuffer(buffer, &dimensions); // count const uint16_t dimensionsLength = static_cast(24 * dimensions); helper::InsertToBuffer(buffer, &dimensionsLength); // length - PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, - buffer); + PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, buffer); ++characteristicsCounter; - PutCharacteristicRecord(characteristic_offset, characteristicsCounter, - stats.Offset, buffer); + PutCharacteristicRecord(characteristic_offset, characteristicsCounter, stats.Offset, buffer); - PutCharacteristicRecord(characteristic_payload_offset, - characteristicsCounter, stats.PayloadOffset, - buffer); + PutCharacteristicRecord(characteristic_payload_offset, characteristicsCounter, + stats.PayloadOffset, buffer); if (blockInfo.Operations.size()) { - const bool isZeroCount = - std::all_of(blockInfo.Count.begin(), blockInfo.Count.end(), - [](const size_t i) { return i == 0; }); + const bool isZeroCount = std::all_of(blockInfo.Count.begin(), blockInfo.Count.end(), + [](const size_t i) { return i == 0; }); // do not compress if count dimensions are all zero if (!isZeroCount) @@ -671,18 +627,18 @@ void BP3Serializer::PutVariableCharacteristics( &characteristicsCounter); // count (1) // remove its own length (4) + characteristic counter (1) - const uint32_t characteristicsLength = static_cast( - buffer.size() - characteristicsCountPosition - 4 - 1); + const uint32_t characteristicsLength = + static_cast(buffer.size() - characteristicsCountPosition - 4 - 1); helper::CopyToBuffer(buffer, backPosition, &characteristicsLength); // length } template -void BP3Serializer::PutVariableCharacteristics( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, const Stats &stats, - std::vector &buffer, size_t &position) noexcept +void BP3Serializer::PutVariableCharacteristics(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, std::vector &buffer, + size_t &position) noexcept { // going back at the end const size_t characteristicsCountPosition = position; @@ -698,15 +654,13 @@ void BP3Serializer::PutVariableCharacteristics( helper::CopyToBuffer(buffer, position, &dimensions); // count const uint16_t dimensionsLength = static_cast(24 * dimensions); helper::CopyToBuffer(buffer, position, &dimensionsLength); // length - PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, - buffer, position, true); + PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, buffer, position, true); ++characteristicsCounter; // VALUE for SCALAR or STAT min, max for ARRAY if (blockInfo.Data != nullptr) { - PutBoundsRecord(variable.m_SingleValue, stats, characteristicsCounter, - buffer, position); + PutBoundsRecord(variable.m_SingleValue, stats, characteristicsCounter, buffer, position); } // END OF CHARACTERISTICS diff --git a/source/adios2/toolkit/format/bp/bp4/BP4Base.cpp b/source/adios2/toolkit/format/bp/bp4/BP4Base.cpp index d2bad4a489..437d561fc5 100644 --- a/source/adios2/toolkit/format/bp/bp4/BP4Base.cpp +++ b/source/adios2/toolkit/format/bp/bp4/BP4Base.cpp @@ -37,8 +37,8 @@ BP4Base::GetBPBaseNames(const std::vector &names) const noexcept return bpBaseNames; } -std::vector BP4Base::GetBPMetadataFileNames( - const std::vector &names) const noexcept +std::vector +BP4Base::GetBPMetadataFileNames(const std::vector &names) const noexcept { std::vector metadataFileNames; metadataFileNames.reserve(names.size()); @@ -49,19 +49,17 @@ std::vector BP4Base::GetBPMetadataFileNames( return metadataFileNames; } -std::string -BP4Base::GetBPMetadataFileName(const std::string &name) const noexcept +std::string BP4Base::GetBPMetadataFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); const size_t index = 0; // global metadata file is generated by rank 0 /* the name of the metadata file is "md.0" */ - const std::string bpMetaDataRankName(bpName + PathSeparator + "md." + - std::to_string(index)); + const std::string bpMetaDataRankName(bpName + PathSeparator + "md." + std::to_string(index)); return bpMetaDataRankName; } -std::vector BP4Base::GetBPMetadataIndexFileNames( - const std::vector &names) const noexcept +std::vector +BP4Base::GetBPMetadataIndexFileNames(const std::vector &names) const noexcept { std::vector metadataIndexFileNames; metadataIndexFileNames.reserve(names.size()); @@ -72,18 +70,16 @@ std::vector BP4Base::GetBPMetadataIndexFileNames( return metadataIndexFileNames; } -std::string -BP4Base::GetBPMetadataIndexFileName(const std::string &name) const noexcept +std::string BP4Base::GetBPMetadataIndexFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); /* the name of the metadata index file is "md.idx" */ - const std::string bpMetaDataIndexRankName(bpName + PathSeparator + - "md.idx"); + const std::string bpMetaDataIndexRankName(bpName + PathSeparator + "md.idx"); return bpMetaDataIndexRankName; } -std::vector BP4Base::GetBPVersionFileNames( - const std::vector &names) const noexcept +std::vector +BP4Base::GetBPVersionFileNames(const std::vector &names) const noexcept { std::vector versionFileNames; versionFileNames.reserve(names.size()); @@ -94,8 +90,7 @@ std::vector BP4Base::GetBPVersionFileNames( return versionFileNames; } -std::string -BP4Base::GetBPVersionFileName(const std::string &name) const noexcept +std::string BP4Base::GetBPVersionFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); /* the name of the version file is ".bpversion" */ @@ -103,8 +98,8 @@ BP4Base::GetBPVersionFileName(const std::string &name) const noexcept return bpVersionFileName; } -std::vector BP4Base::GetBPActiveFlagFileNames( - const std::vector &names) const noexcept +std::vector +BP4Base::GetBPActiveFlagFileNames(const std::vector &names) const noexcept { std::vector metadataIndexFileNames; metadataIndexFileNames.reserve(names.size()); @@ -115,34 +110,29 @@ std::vector BP4Base::GetBPActiveFlagFileNames( return metadataIndexFileNames; } -std::string -BP4Base::GetBPActiveFlagFileName(const std::string &name) const noexcept +std::string BP4Base::GetBPActiveFlagFileName(const std::string &name) const noexcept { const std::string bpName = helper::RemoveTrailingSlash(name); /* the name of the metadata index file is "md.idx" */ - const std::string bpMetaDataIndexRankName(bpName + PathSeparator + - "active"); + const std::string bpMetaDataIndexRankName(bpName + PathSeparator + "active"); return bpMetaDataIndexRankName; } -std::vector BP4Base::GetBPSubStreamNames( - const std::vector &names) const noexcept +std::vector +BP4Base::GetBPSubStreamNames(const std::vector &names) const noexcept { std::vector bpNames; bpNames.reserve(names.size()); for (const auto &name : names) { - bpNames.push_back( - GetBPSubStreamName(name, static_cast(m_RankMPI))); + bpNames.push_back(GetBPSubStreamName(name, static_cast(m_RankMPI))); } return bpNames; } -std::string BP4Base::GetBPSubFileName(const std::string &name, - const size_t subFileIndex, - const bool hasSubFiles, - const bool isReader) const noexcept +std::string BP4Base::GetBPSubFileName(const std::string &name, const size_t subFileIndex, + const bool hasSubFiles, const bool isReader) const noexcept { return GetBPSubStreamName(name, subFileIndex, hasSubFiles, isReader); } @@ -170,9 +160,8 @@ size_t BP4Base::GetBPIndexSizeInData(const std::string &variableName, } // characteristic statistics - indexSize += 5; // count + length - if (m_Parameters.StatsLevel == - 1) // default, only min and max and dimensions + indexSize += 5; // count + length + if (m_Parameters.StatsLevel == 1) // default, only min and max and dimensions { const size_t nElems = helper::GetTotalSize(count); const size_t nSubblocks = nElems / m_Parameters.StatsBlockSize; @@ -190,15 +179,12 @@ size_t BP4Base::GetBPIndexSizeInData(const std::string &variableName, // PROTECTED BP4Base::ElementIndexHeader -BP4Base::ReadElementIndexHeader(const std::vector &buffer, - size_t &position, +BP4Base::ReadElementIndexHeader(const std::vector &buffer, size_t &position, const bool isLittleEndian) const noexcept { ElementIndexHeader header; - header.Length = - helper::ReadValue(buffer, position, isLittleEndian); - header.MemberID = - helper::ReadValue(buffer, position, isLittleEndian); + header.Length = helper::ReadValue(buffer, position, isLittleEndian); + header.MemberID = helper::ReadValue(buffer, position, isLittleEndian); header.GroupName = ReadBPString(buffer, position, isLittleEndian); header.Name = ReadBPString(buffer, position, isLittleEndian); // header.Path = ReadBP4String(buffer, position, isLittleEndian); @@ -207,18 +193,15 @@ BP4Base::ReadElementIndexHeader(const std::vector &buffer, // uint8_t unused = helper::ReadValue(buffer, position, isLittleEndian); - header.DataType = - helper::ReadValue(buffer, position, isLittleEndian); - header.CharacteristicsSetsCount = - helper::ReadValue(buffer, position, isLittleEndian); + header.DataType = helper::ReadValue(buffer, position, isLittleEndian); + header.CharacteristicsSetsCount = helper::ReadValue(buffer, position, isLittleEndian); return header; } // PRIVATE -std::string BP4Base::GetBPSubStreamName(const std::string &name, - const size_t id, const bool hasSubFiles, - const bool isReader) const noexcept +std::string BP4Base::GetBPSubStreamName(const std::string &name, const size_t id, + const bool hasSubFiles, const bool isReader) const noexcept { if (!hasSubFiles) { @@ -227,14 +210,12 @@ std::string BP4Base::GetBPSubStreamName(const std::string &name, const std::string bpName = helper::RemoveTrailingSlash(name); - const size_t index = isReader ? id - : m_Aggregator.m_IsActive - ? m_Aggregator.m_SubStreamIndex - : id; + const size_t index = isReader ? id + : m_Aggregator.m_IsActive ? m_Aggregator.m_SubStreamIndex + : id; /* the name of a data file starts with "data." */ - const std::string bpRankName(bpName + PathSeparator + "data." + - std::to_string(index)); + const std::string bpRankName(bpName + PathSeparator + "data." + std::to_string(index)); return bpRankName; } diff --git a/source/adios2/toolkit/format/bp/bp4/BP4Base.h b/source/adios2/toolkit/format/bp/bp4/BP4Base.h index c71613c772..41509c9209 100644 --- a/source/adios2/toolkit/format/bp/bp4/BP4Base.h +++ b/source/adios2/toolkit/format/bp/bp4/BP4Base.h @@ -47,8 +47,7 @@ class BP4Base : virtual public BPBase public: /* metadata index table*/ - std::unordered_map>> + std::unordered_map>> m_MetadataIndexTable; BufferSTL m_MetadataIndex; @@ -78,8 +77,7 @@ class BP4Base : virtual public BPBase * @param names * @return vector of base (name.bp) names */ - std::vector - GetBPBaseNames(const std::vector &names) const noexcept; + std::vector GetBPBaseNames(const std::vector &names) const noexcept; /** * Get BP substream names from base names: @@ -88,32 +86,30 @@ class BP4Base : virtual public BPBase * @param baseNames inputs * @return vector of BP substream names for transports */ - std::vector GetBPSubStreamNames( - const std::vector &baseNames) const noexcept; + std::vector + GetBPSubStreamNames(const std::vector &baseNames) const noexcept; - std::vector GetBPMetadataFileNames( - const std::vector &names) const noexcept; + std::vector + GetBPMetadataFileNames(const std::vector &names) const noexcept; std::string GetBPMetadataFileName(const std::string &name) const noexcept; - std::vector GetBPMetadataIndexFileNames( - const std::vector &names) const noexcept; + std::vector + GetBPMetadataIndexFileNames(const std::vector &names) const noexcept; - std::string - GetBPMetadataIndexFileName(const std::string &name) const noexcept; + std::string GetBPMetadataIndexFileName(const std::string &name) const noexcept; std::vector GetBPVersionFileNames(const std::vector &names) const noexcept; std::string GetBPVersionFileName(const std::string &name) const noexcept; - std::vector GetBPActiveFlagFileNames( - const std::vector &names) const noexcept; + std::vector + GetBPActiveFlagFileNames(const std::vector &names) const noexcept; std::string GetBPActiveFlagFileName(const std::string &name) const noexcept; - std::string GetBPSubFileName(const std::string &name, - const size_t subFileIndex, + std::string GetBPSubFileName(const std::string &name, const size_t subFileIndex, const bool hasSubFiles = true, const bool isReader = false) const noexcept; @@ -123,8 +119,7 @@ class BP4Base : virtual public BPBase * @param variableName input * @param count input variable local dimensions */ - size_t GetBPIndexSizeInData(const std::string &variableName, - const Dims &count) const noexcept; + size_t GetBPIndexSizeInData(const std::string &variableName, const Dims &count) const noexcept; protected: /* The position of the length of the serialized variable (metadata + data @@ -137,9 +132,9 @@ class BP4Base : virtual public BPBase */ size_t m_LastVarLengthPosInBuffer = 0; - ElementIndexHeader ReadElementIndexHeader( - const std::vector &buffer, size_t &position, - const bool isLittleEndian = true) const noexcept final; + ElementIndexHeader + ReadElementIndexHeader(const std::vector &buffer, size_t &position, + const bool isLittleEndian = true) const noexcept final; private: std::string GetBPSubStreamName(const std::string &name, const size_t id, diff --git a/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.cpp b/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.cpp index 28ad30715f..38c30cb4b8 100644 --- a/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.cpp +++ b/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.cpp @@ -37,8 +37,7 @@ BP4Deserializer::BP4Deserializer(helper::Comm const &comm) { } -size_t BP4Deserializer::ParseMetadata(const BufferSTL &bufferSTL, - core::Engine &engine, +size_t BP4Deserializer::ParseMetadata(const BufferSTL &bufferSTL, core::Engine &engine, const bool firstStep) { const size_t oldSteps = (firstStep ? 0 : m_MetadataSet.StepsCount); @@ -64,15 +63,12 @@ size_t BP4Deserializer::ParseMetadata(const BufferSTL &bufferSTL, for (size_t i = oldSteps; i < allSteps; i++) { if (selectedSteps.size() == 0 || - std::find(selectedSteps.begin(), selectedSteps.end(), i) != - selectedSteps.end()) + std::find(selectedSteps.begin(), selectedSteps.end(), i) != selectedSteps.end()) { - ParsePGIndexPerStep( - bufferSTL, - (engine.m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) - ? "C++" - : "Fortran", - 0, i + 1); + ParsePGIndexPerStep(bufferSTL, + (engine.m_IO.m_ArrayOrder == ArrayOrdering::RowMajor) ? "C++" + : "Fortran", + 0, i + 1); ParseVariablesIndexPerStep(bufferSTL, engine, 0, i + 1); ParseAttributesIndexPerStep(bufferSTL, engine, 0, i + 1); lastposition = m_MetadataIndexTable[0][i + 1][3]; @@ -81,10 +77,8 @@ size_t BP4Deserializer::ParseMetadata(const BufferSTL &bufferSTL, return lastposition; } -void BP4Deserializer::ParseMetadataIndex(BufferSTL &bufferSTL, - const size_t absoluteStartPos, - const bool hasHeader, - const bool oneStepOnly) +void BP4Deserializer::ParseMetadataIndex(BufferSTL &bufferSTL, const size_t absoluteStartPos, + const bool hasHeader, const bool oneStepOnly) { const auto &buffer = bufferSTL.m_Buffer; size_t &position = bufferSTL.m_Position; @@ -102,12 +96,12 @@ void BP4Deserializer::ParseMetadataIndex(BufferSTL &bufferSTL, #ifndef ADIOS2_HAVE_ENDIAN_REVERSE if (helper::IsLittleEndian() != m_Minifooter.IsLittleEndian) { - helper::Throw( - "Toolkit", "format::bp::BP4Deserializer", "ParseMetadataIndex", - "reader found BigEndian bp file, " - "this version of ADIOS2 wasn't compiled " - "with the cmake flag -DADIOS2_USE_Endian_Reverse=ON " - "explicitly, in call to Open"); + helper::Throw("Toolkit", "format::bp::BP4Deserializer", + "ParseMetadataIndex", + "reader found BigEndian bp file, " + "this version of ADIOS2 wasn't compiled " + "with the cmake flag -DADIOS2_USE_Endian_Reverse=ON " + "explicitly, in call to Open"); } #endif @@ -116,16 +110,13 @@ void BP4Deserializer::ParseMetadataIndex(BufferSTL &bufferSTL, // Writer's ADIOS version position = m_VersionMajorPosition; - uint8_t ascii = helper::ReadValue(buffer, position, - m_Minifooter.IsLittleEndian); + uint8_t ascii = helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); m_Minifooter.ADIOSVersionMajor = ascii - (uint8_t)'0'; position = m_VersionMinorPosition; - ascii = helper::ReadValue(buffer, position, - m_Minifooter.IsLittleEndian); + ascii = helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); m_Minifooter.ADIOSVersionMinor = ascii - (uint8_t)'0'; position = m_VersionPatchPosition; - ascii = helper::ReadValue(buffer, position, - m_Minifooter.IsLittleEndian); + ascii = helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); m_Minifooter.ADIOSVersionPatch = ascii - (uint8_t)'0'; m_Minifooter.ADIOSVersion = m_Minifooter.ADIOSVersionMajor * 1000000 + m_Minifooter.ADIOSVersionMinor * 1000 + @@ -133,8 +124,8 @@ void BP4Deserializer::ParseMetadataIndex(BufferSTL &bufferSTL, // BP version position = m_BPVersionPosition; - m_Minifooter.Version = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + m_Minifooter.Version = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); if (m_Minifooter.Version != 4) { helper::Throw( @@ -146,8 +137,8 @@ void BP4Deserializer::ParseMetadataIndex(BufferSTL &bufferSTL, // Writer active flag position = m_ActiveFlagPosition; - const char activeChar = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const char activeChar = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); m_WriterIsActive = (activeChar == '\1' ? true : false); // move position to first row @@ -158,24 +149,24 @@ void BP4Deserializer::ParseMetadataIndex(BufferSTL &bufferSTL, do { std::vector ptrs; - const uint64_t currentStep = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); - const uint64_t mpiRank = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); - const uint64_t pgIndexStart = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t currentStep = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t mpiRank = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t pgIndexStart = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); ptrs.push_back(pgIndexStart - absoluteStartPos); - const uint64_t variablesIndexStart = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t variablesIndexStart = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); ptrs.push_back(variablesIndexStart - absoluteStartPos); - const uint64_t attributesIndexStart = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t attributesIndexStart = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); ptrs.push_back(attributesIndexStart - absoluteStartPos); - const uint64_t currentStepEndPos = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t currentStepEndPos = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); ptrs.push_back(currentStepEndPos - absoluteStartPos); - const uint64_t currentTimeStamp = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t currentTimeStamp = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); ptrs.push_back(currentTimeStamp); m_MetadataIndexTable[mpiRank][currentStep] = ptrs; position += 8; @@ -186,8 +177,7 @@ const helper::BlockOperationInfo &BP4Deserializer::InitPostOperatorBlockData( const std::vector &blockOperationsInfo) const { size_t index = 0; - for (const helper::BlockOperationInfo &blockOperationInfo : - blockOperationsInfo) + for (const helper::BlockOperationInfo &blockOperationInfo : blockOperationsInfo) { const std::string type = blockOperationInfo.Info.at("Type"); if (m_TransformTypes.count(type) == 1) @@ -263,22 +253,21 @@ format " "version 3 and above, found " + std::to_string(m_Minifooter.Version) + } */ void BP4Deserializer::ParsePGIndexPerStep(const BufferSTL &bufferSTL, - const std::string hostLanguage, - size_t submetadatafileId, size_t step) + const std::string hostLanguage, size_t submetadatafileId, + size_t step) { const auto &buffer = bufferSTL.m_Buffer; size_t position = m_MetadataIndexTable[submetadatafileId][step][0]; // std::cout << step << ", " << position << std::endl; m_MetadataSet.DataPGCount = m_MetadataSet.DataPGCount + - helper::ReadValue(buffer, position, - m_Minifooter.IsLittleEndian); + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); // read length of pg index which is not used, only for moving the pointer helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); - ProcessGroupIndex index = ReadProcessGroupIndexHeader( - buffer, position, m_Minifooter.IsLittleEndian); + ProcessGroupIndex index = + ReadProcessGroupIndexHeader(buffer, position, m_Minifooter.IsLittleEndian); if (index.IsColumnMajor == 'y') { m_IsRowMajor = false; @@ -328,25 +317,21 @@ void BP4Deserializer::ParsePGIndexPerStep(const BufferSTL &bufferSTL, } } */ -void BP4Deserializer::ParseVariablesIndexPerStep(const BufferSTL &bufferSTL, - core::Engine &engine, - size_t submetadatafileId, - size_t step) +void BP4Deserializer::ParseVariablesIndexPerStep(const BufferSTL &bufferSTL, core::Engine &engine, + size_t submetadatafileId, size_t step) { - auto lf_ReadElementIndexPerStep = [&](core::Engine &engine, - const std::vector &buffer, + auto lf_ReadElementIndexPerStep = [&](core::Engine &engine, const std::vector &buffer, size_t position, size_t step) { - const ElementIndexHeader header = ReadElementIndexHeader( - buffer, position, m_Minifooter.IsLittleEndian); + const ElementIndexHeader header = + ReadElementIndexHeader(buffer, position, m_Minifooter.IsLittleEndian); switch (header.DataType) { -#define make_case(T) \ - case (TypeTraits::type_enum): { \ - DefineVariableInEngineIOPerStep(header, engine, buffer, position, \ - step); \ - break; \ +#define make_case(T) \ + case (TypeTraits::type_enum): { \ + DefineVariableInEngineIOPerStep(header, engine, buffer, position, step); \ + break; \ } ADIOS2_FOREACH_STDTYPE_1ARG(make_case) #undef make_case @@ -358,8 +343,8 @@ void BP4Deserializer::ParseVariablesIndexPerStep(const BufferSTL &bufferSTL, size_t position = m_MetadataIndexTable[submetadatafileId][step][1]; helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); - const uint64_t length = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t length = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); const size_t startPosition = position; size_t localPosition = 0; @@ -373,9 +358,8 @@ void BP4Deserializer::ParseVariablesIndexPerStep(const BufferSTL &bufferSTL, { lf_ReadElementIndexPerStep(engine, buffer, position, step); - const size_t elementIndexSize = - static_cast(helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian)); + const size_t elementIndexSize = static_cast( + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian)); position += elementIndexSize; localPosition = position - startPosition; } @@ -514,30 +498,26 @@ void BP4Deserializer::ParseVariablesIndexPerStep(const BufferSTL &bufferSTL, } */ /* Parse the attributes index at each step */ -void BP4Deserializer::ParseAttributesIndexPerStep(const BufferSTL &bufferSTL, - core::Engine &engine, - size_t submetadatafileId, - size_t step) +void BP4Deserializer::ParseAttributesIndexPerStep(const BufferSTL &bufferSTL, core::Engine &engine, + size_t submetadatafileId, size_t step) { - auto lf_ReadElementIndex = [&](core::Engine &engine, - const std::vector &buffer, + auto lf_ReadElementIndex = [&](core::Engine &engine, const std::vector &buffer, size_t position) { - const ElementIndexHeader header = ReadElementIndexHeader( - buffer, position, m_Minifooter.IsLittleEndian); + const ElementIndexHeader header = + ReadElementIndexHeader(buffer, position, m_Minifooter.IsLittleEndian); switch (header.DataType) { -#define make_case(T) \ - case (TypeTraits::type_enum): { \ - DefineAttributeInEngineIO(header, engine, buffer, position); \ - break; \ +#define make_case(T) \ + case (TypeTraits::type_enum): { \ + DefineAttributeInEngineIO(header, engine, buffer, position); \ + break; \ } ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(make_case) #undef make_case case (type_string_array): { - DefineAttributeInEngineIO(header, engine, buffer, - position); + DefineAttributeInEngineIO(header, engine, buffer, position); break; } @@ -548,8 +528,8 @@ void BP4Deserializer::ParseAttributesIndexPerStep(const BufferSTL &bufferSTL, size_t position = m_MetadataIndexTable[submetadatafileId][step][2]; helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); - const uint64_t length = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const uint64_t length = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); const size_t startPosition = position; size_t localPosition = 0; @@ -558,9 +538,8 @@ void BP4Deserializer::ParseAttributesIndexPerStep(const BufferSTL &bufferSTL, while (localPosition < length) { lf_ReadElementIndex(engine, buffer, position); - const size_t elementIndexSize = - static_cast(helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian)); + const size_t elementIndexSize = static_cast( + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian)); position += elementIndexSize; localPosition = position - startPosition; } @@ -631,11 +610,10 @@ BP4Deserializer::PerformGetsVariablesSubFileInfo(core::IO &io) if (type == DataType::Struct) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - subFileInfoPair.second = \ - GetSubFileInfo(*io.InquireVariable(variableName)); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + subFileInfoPair.second = GetSubFileInfo(*io.InquireVariable(variableName)); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -645,25 +623,23 @@ BP4Deserializer::PerformGetsVariablesSubFileInfo(core::IO &io) void BP4Deserializer::ClipMemory(const std::string &variableName, core::IO &io, const std::vector &contiguousMemory, - const Box &blockBox, - const Box &intersectionBox) const + const Box &blockBox, const Box &intersectionBox) const { const DataType type(io.InquireVariableType(variableName)); if (type == DataType::Struct) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - core::Variable *variable = io.InquireVariable(variableName); \ - if (variable != nullptr) \ - { \ - helper::ClipContiguousMemory(variable->m_Data, variable->m_Start, \ - variable->m_Count, contiguousMemory, \ - blockBox, intersectionBox, \ - m_IsRowMajor, m_ReverseDimensions); \ - } \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + core::Variable *variable = io.InquireVariable(variableName); \ + if (variable != nullptr) \ + { \ + helper::ClipContiguousMemory(variable->m_Data, variable->m_Start, variable->m_Count, \ + contiguousMemory, blockBox, intersectionBox, \ + m_IsRowMajor, m_ReverseDimensions); \ + } \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -673,68 +649,62 @@ bool BP4Deserializer::ReadActiveFlag(std::vector &buffer) { if (buffer.size() < m_ActiveFlagPosition) { - helper::Throw( - "Toolkit", "format::bp::BP4Deserializer", "ReadActiveFlag", - "called with a buffer smaller than required"); + helper::Throw("Toolkit", "format::bp::BP4Deserializer", + "ReadActiveFlag", + "called with a buffer smaller than required"); } // Writer active flag size_t position = m_ActiveFlagPosition; - const char activeChar = helper::ReadValue( - buffer, position, m_Minifooter.IsLittleEndian); + const char activeChar = + helper::ReadValue(buffer, position, m_Minifooter.IsLittleEndian); m_WriterIsActive = (activeChar == '\1' ? true : false); return m_WriterIsActive; } -#define declare_template_instantiation(T) \ - template void BP4Deserializer::GetSyncVariableDataFromStream( \ - core::Variable &, BufferSTL &) const; \ - \ - template typename core::Variable::BPInfo & \ - BP4Deserializer::InitVariableBlockInfo(core::Variable &, T *) const; \ - \ - template void BP4Deserializer::SetVariableBlockInfo( \ - core::Variable &, typename core::Variable::BPInfo &) const; \ - \ - template void BP4Deserializer::ClipContiguousMemory( \ - typename core::Variable::BPInfo &, const std::vector &, \ - const Box &, const Box &) const; \ - \ - template void BP4Deserializer::GetValueFromMetadata( \ - core::Variable &variable, T *) const; +#define declare_template_instantiation(T) \ + template void BP4Deserializer::GetSyncVariableDataFromStream(core::Variable &, BufferSTL &) \ + const; \ + \ + template typename core::Variable::BPInfo &BP4Deserializer::InitVariableBlockInfo( \ + core::Variable &, T *) const; \ + \ + template void BP4Deserializer::SetVariableBlockInfo( \ + core::Variable &, typename core::Variable::BPInfo &) const; \ + \ + template void BP4Deserializer::ClipContiguousMemory( \ + typename core::Variable::BPInfo &, const std::vector &, const Box &, \ + const Box &) const; \ + \ + template void BP4Deserializer::GetValueFromMetadata(core::Variable &variable, T *) const; ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation -#define declare_template_instantiation(T) \ - \ - template std::map \ - BP4Deserializer::GetSyncVariableSubFileInfo(const core::Variable &) \ - const; \ - \ - template void BP4Deserializer::GetDeferredVariable(core::Variable &, \ - T *); \ - \ - template helper::SubFileInfoMap BP4Deserializer::GetSubFileInfo( \ - const core::Variable &) const; \ - \ - template std::map::BPInfo>> \ - BP4Deserializer::AllStepsBlocksInfo(const core::Variable &) const; \ - \ - template std::vector::BPInfo>> \ - BP4Deserializer::AllRelativeStepsBlocksInfo(const core::Variable &) \ - const; \ - \ - template std::vector::BPInfo> \ - BP4Deserializer::BlocksInfo(const core::Variable &, const size_t) \ - const; \ - \ - template void BP4Deserializer::PreDataRead( \ - core::Variable &, typename core::Variable::BPInfo &, \ - const helper::SubStreamBoxInfo &, char *&, size_t &, size_t &, \ - const size_t); \ - \ - template void BP4Deserializer::PostDataRead( \ - core::Variable &, typename core::Variable::BPInfo &, \ +#define declare_template_instantiation(T) \ + \ + template std::map \ + BP4Deserializer::GetSyncVariableSubFileInfo(const core::Variable &) const; \ + \ + template void BP4Deserializer::GetDeferredVariable(core::Variable &, T *); \ + \ + template helper::SubFileInfoMap BP4Deserializer::GetSubFileInfo(const core::Variable &) \ + const; \ + \ + template std::map::BPInfo>> \ + BP4Deserializer::AllStepsBlocksInfo(const core::Variable &) const; \ + \ + template std::vector::BPInfo>> \ + BP4Deserializer::AllRelativeStepsBlocksInfo(const core::Variable &) const; \ + \ + template std::vector::BPInfo> BP4Deserializer::BlocksInfo( \ + const core::Variable &, const size_t) const; \ + \ + template void BP4Deserializer::PreDataRead( \ + core::Variable &, typename core::Variable::BPInfo &, \ + const helper::SubStreamBoxInfo &, char *&, size_t &, size_t &, const size_t); \ + \ + template void BP4Deserializer::PostDataRead( \ + core::Variable &, typename core::Variable::BPInfo &, \ const helper::SubStreamBoxInfo &, const bool, const size_t); ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) diff --git a/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.h b/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.h index f8812ac487..29645cab63 100644 --- a/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.h +++ b/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.h @@ -65,8 +65,7 @@ class BP4Deserializer : virtual public BP4Base * @param bufferSTL bp buffer input that contains metadata and data */ template - void GetSyncVariableDataFromStream(core::Variable &variable, - BufferSTL &bufferSTL) const; + void GetSyncVariableDataFromStream(core::Variable &variable, BufferSTL &bufferSTL) const; /** * Initializes a block inside variable.m_BlocksInfo @@ -76,8 +75,8 @@ class BP4Deserializer : virtual public BP4Base * twice) */ template - typename core::Variable::BPInfo & - InitVariableBlockInfo(core::Variable &variable, T *data) const; + typename core::Variable::BPInfo &InitVariableBlockInfo(core::Variable &variable, + T *data) const; /** * Sets read block information from the available metadata information @@ -85,9 +84,8 @@ class BP4Deserializer : virtual public BP4Base * @param blockInfo */ template - void - SetVariableBlockInfo(core::Variable &variable, - typename core::Variable::BPInfo &blockInfo) const; + void SetVariableBlockInfo(core::Variable &variable, + typename core::Variable::BPInfo &blockInfo) const; /** * Prepares the information to get raw data from the transport manager for a @@ -106,18 +104,14 @@ class BP4Deserializer : virtual public BP4Base * spaces per thread, default = 0 */ template - void PreDataRead(core::Variable &variable, - typename core::Variable::BPInfo &blockInfo, - const helper::SubStreamBoxInfo &subStreamBoxInfo, - char *&buffer, size_t &payloadSize, size_t &payloadOffset, - const size_t threadID = 0); + void PreDataRead(core::Variable &variable, typename core::Variable::BPInfo &blockInfo, + const helper::SubStreamBoxInfo &subStreamBoxInfo, char *&buffer, + size_t &payloadSize, size_t &payloadOffset, const size_t threadID = 0); template - void PostDataRead(core::Variable &variable, - typename core::Variable::BPInfo &blockInfo, + void PostDataRead(core::Variable &variable, typename core::Variable::BPInfo &blockInfo, const helper::SubStreamBoxInfo &subStreamBoxInfo, - const bool isRowMajorDestination, - const size_t threadID = 0); + const bool isRowMajorDestination, const size_t threadID = 0); void BackCompatDecompress(const helper::SubStreamBoxInfo &subStreamBoxInfo, const size_t threadID = 0); @@ -132,8 +126,7 @@ class BP4Deserializer : virtual public BP4Base */ template void ClipContiguousMemory(typename core::Variable::BPInfo &blockInfo, - const std::vector &contiguousMemory, - const Box &blockBox, + const std::vector &contiguousMemory, const Box &blockBox, const Box &intersectionBox) const; /** @@ -153,12 +146,11 @@ class BP4Deserializer : virtual public BP4Base AllRelativeStepsBlocksInfo(const core::Variable &variable) const; template - std::vector::BPInfo> - BlocksInfo(const core::Variable &variable, const size_t step) const; + std::vector::BPInfo> BlocksInfo(const core::Variable &variable, + const size_t step) const; // TODO : Will deprecate all function below - std::map - PerformGetsVariablesSubFileInfo(core::IO &io); + std::map PerformGetsVariablesSubFileInfo(core::IO &io); // TODO : will deprecate template @@ -171,13 +163,11 @@ class BP4Deserializer : virtual public BP4Base // TODO : will deprecate template - helper::SubFileInfoMap - GetSubFileInfo(const core::Variable &variable) const; + helper::SubFileInfoMap GetSubFileInfo(const core::Variable &variable) const; // TODO : will deprecate void ClipMemory(const std::string &variableName, core::IO &io, - const std::vector &contiguousMemory, - const Box &blockBox, + const std::vector &contiguousMemory, const Box &blockBox, const Box &intersectionBox) const; bool ReadActiveFlag(std::vector &buffer); @@ -193,18 +183,15 @@ class BP4Deserializer : virtual public BP4Base void ParseMinifooter(const BufferSTL &bufferSTL); // void ParsePGIndex(const BufferSTL &bufferSTL, const core::IO &io); - void ParsePGIndexPerStep(const BufferSTL &bufferSTL, - const std::string hostLanguage, + void ParsePGIndexPerStep(const BufferSTL &bufferSTL, const std::string hostLanguage, size_t submetadatafileId, size_t step); // void ParseVariablesIndex(const BufferSTL &bufferSTL, core::IO &io); - void ParseVariablesIndexPerStep(const BufferSTL &bufferSTL, - core::Engine &engine, + void ParseVariablesIndexPerStep(const BufferSTL &bufferSTL, core::Engine &engine, size_t submetadatafileId, size_t step); // void ParseAttributesIndex(const BufferSTL &bufferSTL, core::IO &io); - void ParseAttributesIndexPerStep(const BufferSTL &bufferSTL, - core::Engine &engine, + void ParseAttributesIndexPerStep(const BufferSTL &bufferSTL, core::Engine &engine, size_t submetadatafileId, size_t step); /** @@ -217,16 +204,13 @@ class BP4Deserializer : virtual public BP4Base */ template - void DefineVariableInEngineIOPerStep(const ElementIndexHeader &header, - core::Engine &engine, - const std::vector &buffer, - size_t position, size_t step) const; + void DefineVariableInEngineIOPerStep(const ElementIndexHeader &header, core::Engine &engine, + const std::vector &buffer, size_t position, + size_t step) const; template - void DefineAttributeInEngineIO(const ElementIndexHeader &header, - core::Engine &engine, - const std::vector &buffer, - size_t position) const; + void DefineAttributeInEngineIO(const ElementIndexHeader &header, core::Engine &engine, + const std::vector &buffer, size_t position) const; template std::vector::BPInfo> @@ -234,8 +218,7 @@ class BP4Deserializer : virtual public BP4Base const std::vector &blocksIndexOffsets) const; const helper::BlockOperationInfo &InitPostOperatorBlockData( - const std::vector &blockOperationsInfo) - const; + const std::vector &blockOperationsInfo) const; }; } // end namespace format diff --git a/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.tcc b/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.tcc index 3cb55713c8..4baa29203c 100644 --- a/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.tcc +++ b/source/adios2/toolkit/format/bp/bp4/BP4Deserializer.tcc @@ -31,8 +31,7 @@ template void BP4Deserializer::GetSyncVariableDataFromStream(core::Variable &variable, BufferSTL &bufferSTL) const { - auto itStep = variable.m_AvailableStepBlockIndexOffsets.find( - variable.m_StepsStart + 1); + auto itStep = variable.m_AvailableStepBlockIndexOffsets.find(variable.m_StepsStart + 1); if (itStep == variable.m_AvailableStepBlockIndexOffsets.end()) { @@ -44,10 +43,8 @@ void BP4Deserializer::GetSyncVariableDataFromStream(core::Variable &variable, size_t position = itStep->second.front(); size_t irrelevant; - const Characteristics characteristics = - ReadElementIndexCharacteristics(buffer, position, - TypeTraits::type_enum, irrelevant, - false, m_Minifooter.IsLittleEndian); + const Characteristics characteristics = ReadElementIndexCharacteristics( + buffer, position, TypeTraits::type_enum, irrelevant, false, m_Minifooter.IsLittleEndian); const size_t payloadOffset = characteristics.Statistics.PayloadOffset; variable.m_Data = reinterpret_cast(&buffer[payloadOffset]); @@ -55,8 +52,7 @@ void BP4Deserializer::GetSyncVariableDataFromStream(core::Variable &variable, template typename core::Variable::BPInfo & -BP4Deserializer::InitVariableBlockInfo(core::Variable &variable, - T *data) const +BP4Deserializer::InitVariableBlockInfo(core::Variable &variable, T *data) const { const size_t stepsStart = variable.m_StepsStart; const size_t stepsCount = variable.m_StepsCount; @@ -70,8 +66,8 @@ BP4Deserializer::InitVariableBlockInfo(core::Variable &variable, "steps start " + std::to_string(stepsStart) + " from SetStepsSelection or BeginStep is larger than " "the maximum available step " + - std::to_string(maxStep - 1) + " for variable " + - variable.m_Name + ", in call to Get"); + std::to_string(maxStep - 1) + " for variable " + variable.m_Name + + ", in call to Get"); } auto itStep = std::next(indices.begin(), stepsStart); @@ -84,13 +80,10 @@ BP4Deserializer::InitVariableBlockInfo(core::Variable &variable, if (itStep == indices.end()) { helper::Throw( - "Toolkit", "format::bp::BP4Deserializer", - "InitVariableBlockInfo", - "offset " + std::to_string(i) + " from steps start " + - std::to_string(stepsStart) + " in variable " + - variable.m_Name + - " is beyond the largest available step = " + - std::to_string(maxStep - 1) + + "Toolkit", "format::bp::BP4Deserializer", "InitVariableBlockInfo", + "offset " + std::to_string(i) + " from steps start " + std::to_string(stepsStart) + + " in variable " + variable.m_Name + + " is beyond the largest available step = " + std::to_string(maxStep - 1) + ", check Variable SetStepSelection argument stepsCount " "(random access), or " "number of BeginStep calls (streaming), in call to Get"); @@ -109,11 +102,9 @@ BP4Deserializer::InitVariableBlockInfo(core::Variable &variable, if (variable.m_BlockID >= blocksInfo.size()) { helper::Throw( - "Toolkit", "format::bp::BP4Deserializer", - "InitVariableBlockInfo", - "invalid blockID " + std::to_string(variable.m_BlockID) + - " from steps start " + std::to_string(stepsStart) + - " in variable " + variable.m_Name + + "Toolkit", "format::bp::BP4Deserializer", "InitVariableBlockInfo", + "invalid blockID " + std::to_string(variable.m_BlockID) + " from steps start " + + std::to_string(stepsStart) + " in variable " + variable.m_Name + ", check argument to Variable::SetBlockID, in call " "to Get"); } @@ -138,13 +129,12 @@ BP4Deserializer::InitVariableBlockInfo(core::Variable &variable, } template -void BP4Deserializer::SetVariableBlockInfo( - core::Variable &variable, - typename core::Variable::BPInfo &blockInfo) const +void BP4Deserializer::SetVariableBlockInfo(core::Variable &variable, + typename core::Variable::BPInfo &blockInfo) const { - auto lf_SetSubStreamInfoOperations = - [&](const BPOpInfo &bpOpInfo, const size_t payloadOffset, - helper::SubStreamBoxInfo &subStreamInfo, const bool isRowMajor) + auto lf_SetSubStreamInfoOperations = [&](const BPOpInfo &bpOpInfo, const size_t payloadOffset, + helper::SubStreamBoxInfo &subStreamInfo, + const bool isRowMajor) { helper::BlockOperationInfo blockOperation; @@ -161,26 +151,23 @@ void BP4Deserializer::SetVariableBlockInfo( // read metadata from supported type and populate Info if (m_Minifooter.ADIOSVersion >= 2008000) { - std::memcpy(&blockOperation.PayloadSize, - bpOpInfo.Metadata.data() + 8, 8); + std::memcpy(&blockOperation.PayloadSize, bpOpInfo.Metadata.data() + 8, 8); } else { // Files made before 2.8 have incompatible compression operators // Add backward compatible fixes here to parse compression metadata // directly from the BP4 metadata format - std::shared_ptr bpOp = - SetBPBackCompatOperation(bpOpInfo.Type); + std::shared_ptr bpOp = SetBPBackCompatOperation(bpOpInfo.Type); if (bpOp) { bpOp->GetMetadata(bpOpInfo.Metadata, blockOperation.Info); - blockOperation.PayloadSize = static_cast( - std::stoull(blockOperation.Info.at("OutputSize"))); + blockOperation.PayloadSize = + static_cast(std::stoull(blockOperation.Info.at("OutputSize"))); } else { - std::memcpy(&blockOperation.PayloadSize, - bpOpInfo.Metadata.data() + 8, 8); + std::memcpy(&blockOperation.PayloadSize, bpOpInfo.Metadata.data() + 8, 8); } } @@ -190,8 +177,7 @@ void BP4Deserializer::SetVariableBlockInfo( auto lf_SetSubStreamInfoLocalArray = [&](const std::string &variableName, const Box &selectionBox, typename core::Variable::BPInfo &blockInfo, const size_t step, - const size_t blockIndexOffset, const BufferSTL &bufferSTL, - const bool isRowMajor) + const size_t blockIndexOffset, const BufferSTL &bufferSTL, const bool isRowMajor) { const std::vector &buffer = bufferSTL.m_Buffer; @@ -200,9 +186,8 @@ void BP4Deserializer::SetVariableBlockInfo( size_t irrelevant; const Characteristics blockCharacteristics = - ReadElementIndexCharacteristics( - buffer, position, TypeTraits::type_enum, irrelevant, false, - m_Minifooter.IsLittleEndian); + ReadElementIndexCharacteristics(buffer, position, TypeTraits::type_enum, + irrelevant, false, m_Minifooter.IsLittleEndian); // check if they intersect helper::SubStreamBoxInfo subStreamInfo; @@ -212,9 +197,8 @@ void BP4Deserializer::SetVariableBlockInfo( } // if selection box start is not empty = local selection - subStreamInfo.BlockBox = - helper::StartEndBox(Dims(blockCharacteristics.Count.size(), 0), - blockCharacteristics.Count); + subStreamInfo.BlockBox = helper::StartEndBox(Dims(blockCharacteristics.Count.size(), 0), + blockCharacteristics.Count); if (!selectionBox.first.empty()) // selection start count was defined { @@ -236,8 +220,7 @@ void BP4Deserializer::SetVariableBlockInfo( if (dimensions != blockInfo.Count.size()) { helper::Throw( - "Toolkit", "format::bp::BP4Deserializer", - "SetVariableBlockInfo", + "Toolkit", "format::bp::BP4Deserializer", "SetVariableBlockInfo", "block Count (available) and " "selection Count (requested) number of dimensions, do not " "match " @@ -245,24 +228,21 @@ void BP4Deserializer::SetVariableBlockInfo( variableName + ", in call to Get"); } - const Dims readInCount = m_ReverseDimensions - ? Dims(blockCharacteristics.Count.rbegin(), - blockCharacteristics.Count.rend()) - : blockCharacteristics.Count; + const Dims readInCount = m_ReverseDimensions ? Dims(blockCharacteristics.Count.rbegin(), + blockCharacteristics.Count.rend()) + : blockCharacteristics.Count; - const Dims blockInfoStart = blockInfo.Start.empty() - ? Dims(blockInfo.Count.size(), 0) - : blockInfo.Start; + const Dims blockInfoStart = + blockInfo.Start.empty() ? Dims(blockInfo.Count.size(), 0) : blockInfo.Start; for (size_t i = 0; i < dimensions; ++i) { if (blockInfoStart[i] + blockInfo.Count[i] > readInCount[i]) { helper::Throw( - "Toolkit", "format::bp::BP4Deserializer", - "SetVariableBlockInfo", - "selection Start " + helper::DimsToString(blockInfoStart) + - " and Count " + helper::DimsToString(blockInfo.Count) + + "Toolkit", "format::bp::BP4Deserializer", "SetVariableBlockInfo", + "selection Start " + helper::DimsToString(blockInfoStart) + " and Count " + + helper::DimsToString(blockInfo.Count) + " (requested) is out of bounds of (available) local" " Count " + helper::DimsToString(readInCount) + @@ -273,25 +253,21 @@ void BP4Deserializer::SetVariableBlockInfo( subStreamInfo.Seeks.first = sizeof(T) * helper::LinearIndex(subStreamInfo.BlockBox, - subStreamInfo.IntersectionBox.first, - isRowMajor); + subStreamInfo.IntersectionBox.first, isRowMajor); subStreamInfo.Seeks.second = - sizeof(T) * (helper::LinearIndex( - subStreamInfo.BlockBox, - subStreamInfo.IntersectionBox.second, isRowMajor) + + sizeof(T) * (helper::LinearIndex(subStreamInfo.BlockBox, + subStreamInfo.IntersectionBox.second, isRowMajor) + 1); - const size_t payloadOffset = - blockCharacteristics.Statistics.PayloadOffset; + const size_t payloadOffset = blockCharacteristics.Statistics.PayloadOffset; const BPOpInfo &bpOp = blockCharacteristics.Statistics.Op; // if they intersect get info Seeks (first: start, second: // count) depending on operation info if (bpOp.IsActive) { - lf_SetSubStreamInfoOperations(bpOp, payloadOffset, subStreamInfo, - m_IsRowMajor); + lf_SetSubStreamInfoOperations(bpOp, payloadOffset, subStreamInfo, m_IsRowMajor); } else { @@ -299,18 +275,15 @@ void BP4Deserializer::SetVariableBlockInfo( subStreamInfo.Seeks.first += payloadOffset; subStreamInfo.Seeks.second += payloadOffset; } - subStreamInfo.SubStreamID = - static_cast(blockCharacteristics.Statistics.FileIndex); + subStreamInfo.SubStreamID = static_cast(blockCharacteristics.Statistics.FileIndex); - blockInfo.StepBlockSubStreamsInfo[step].push_back( - std::move(subStreamInfo)); + blockInfo.StepBlockSubStreamsInfo[step].push_back(std::move(subStreamInfo)); }; auto lf_SetSubStreamInfoGlobalArray = [&](const std::string &variableName, const Box &selectionBox, typename core::Variable::BPInfo &blockInfo, const size_t step, - const size_t blockIndexOffset, const BufferSTL &bufferSTL, - const bool isRowMajor) + const size_t blockIndexOffset, const BufferSTL &bufferSTL, const bool isRowMajor) { const std::vector &buffer = bufferSTL.m_Buffer; @@ -319,9 +292,8 @@ void BP4Deserializer::SetVariableBlockInfo( size_t irrelevant; const Characteristics blockCharacteristics = - ReadElementIndexCharacteristics( - buffer, position, TypeTraits::type_enum, irrelevant, false, - m_Minifooter.IsLittleEndian); + ReadElementIndexCharacteristics(buffer, position, TypeTraits::type_enum, + irrelevant, false, m_Minifooter.IsLittleEndian); // check if they intersect helper::SubStreamBoxInfo subStreamInfo; @@ -331,8 +303,8 @@ void BP4Deserializer::SetVariableBlockInfo( subStreamInfo.ZeroBlock = true; } - subStreamInfo.BlockBox = helper::StartEndBox( - blockCharacteristics.Start, blockCharacteristics.Count); + subStreamInfo.BlockBox = + helper::StartEndBox(blockCharacteristics.Start, blockCharacteristics.Count); subStreamInfo.IntersectionBox = helper::IntersectionBox(selectionBox, subStreamInfo.BlockBox); @@ -345,24 +317,20 @@ void BP4Deserializer::SetVariableBlockInfo( // relative position subStreamInfo.Seeks.first = sizeof(T) * helper::LinearIndex(subStreamInfo.BlockBox, - subStreamInfo.IntersectionBox.first, - isRowMajor); + subStreamInfo.IntersectionBox.first, isRowMajor); subStreamInfo.Seeks.second = - sizeof(T) * (helper::LinearIndex( - subStreamInfo.BlockBox, - subStreamInfo.IntersectionBox.second, isRowMajor) + + sizeof(T) * (helper::LinearIndex(subStreamInfo.BlockBox, + subStreamInfo.IntersectionBox.second, isRowMajor) + 1); - const size_t payloadOffset = - blockCharacteristics.Statistics.PayloadOffset; + const size_t payloadOffset = blockCharacteristics.Statistics.PayloadOffset; const auto &bp4Op = blockCharacteristics.Statistics.Op; // if they intersect get info Seeks (first: start, second: // count) depending on operation info if (bp4Op.IsActive) { - lf_SetSubStreamInfoOperations(bp4Op, payloadOffset, subStreamInfo, - m_IsRowMajor); + lf_SetSubStreamInfoOperations(bp4Op, payloadOffset, subStreamInfo, m_IsRowMajor); } else { @@ -370,19 +338,17 @@ void BP4Deserializer::SetVariableBlockInfo( subStreamInfo.Seeks.first += payloadOffset; subStreamInfo.Seeks.second += payloadOffset; } - subStreamInfo.SubStreamID = - static_cast(blockCharacteristics.Statistics.FileIndex); + subStreamInfo.SubStreamID = static_cast(blockCharacteristics.Statistics.FileIndex); - blockInfo.StepBlockSubStreamsInfo[step].push_back( - std::move(subStreamInfo)); + blockInfo.StepBlockSubStreamsInfo[step].push_back(std::move(subStreamInfo)); }; // BODY OF FUNCTIONS STARTS HERE const std::map> &indices = variable.m_AvailableStepBlockIndexOffsets; - const Box selectionBox = helper::StartEndBox( - blockInfo.Start, blockInfo.Count, m_ReverseDimensions); + const Box selectionBox = + helper::StartEndBox(blockInfo.Start, blockInfo.Count, m_ReverseDimensions); auto itStep = std::next(indices.begin(), blockInfo.StepsStart); @@ -399,13 +365,11 @@ void BP4Deserializer::SetVariableBlockInfo( if (dimensions != blockInfo.Shape.size()) { helper::Throw( - "Toolkit", "format::bp::BP4Deserializer", - "SetVariableBlockInfo", + "Toolkit", "format::bp::BP4Deserializer", "SetVariableBlockInfo", "variable Shape (available) and " "selection Shape (requested) number of dimensions, do not " "match in step " + - std::to_string(step) + - " when reading global array variable " + + std::to_string(step) + " when reading global array variable " + variable.m_Name + ", in call to Get"); } @@ -414,33 +378,28 @@ void BP4Deserializer::SetVariableBlockInfo( if (blockInfo.Start[i] + blockInfo.Count[i] > readInShape[i]) { helper::Throw( - "Toolkit", "format::bp::BP4Deserializer", - "SetVariableBlockInfo", - "selection Start " + - helper::DimsToString(blockInfo.Start) + - " and Count " + + "Toolkit", "format::bp::BP4Deserializer", "SetVariableBlockInfo", + "selection Start " + helper::DimsToString(blockInfo.Start) + " and Count " + helper::DimsToString(blockInfo.Count) + " (requested) is out of bounds of (available) " "Shape " + helper::DimsToString(readInShape) + - " , when reading global array variable " + - variable.m_Name + " in step " + - std::to_string(step) + ", in call to Get"); + " , when reading global array variable " + variable.m_Name + + " in step " + std::to_string(step) + ", in call to Get"); } } // Get intersections with each block for (const size_t blockOffset : blockOffsets) { - lf_SetSubStreamInfoGlobalArray(variable.m_Name, selectionBox, - blockInfo, step, blockOffset, - m_Metadata, m_IsRowMajor); + lf_SetSubStreamInfoGlobalArray(variable.m_Name, selectionBox, blockInfo, step, + blockOffset, m_Metadata, m_IsRowMajor); } } else if (variable.m_ShapeID == ShapeID::LocalArray) { - lf_SetSubStreamInfoLocalArray( - variable.m_Name, selectionBox, blockInfo, step, - blockOffsets[blockInfo.BlockID], m_Metadata, m_IsRowMajor); + lf_SetSubStreamInfoLocalArray(variable.m_Name, selectionBox, blockInfo, step, + blockOffsets[blockInfo.BlockID], m_Metadata, + m_IsRowMajor); } ++itStep; @@ -448,13 +407,11 @@ void BP4Deserializer::SetVariableBlockInfo( } template -void BP4Deserializer::GetValueFromMetadata(core::Variable &variable, - T *data) const +void BP4Deserializer::GetValueFromMetadata(core::Variable &variable, T *data) const { const auto &buffer = m_Metadata.m_Buffer; - const typename core::Variable::BPInfo &blockInfo = - InitVariableBlockInfo(variable, data); + const typename core::Variable::BPInfo &blockInfo = InitVariableBlockInfo(variable, data); const size_t stepsStart = blockInfo.StepsStart; const size_t stepsCount = blockInfo.StepsCount; @@ -468,36 +425,30 @@ void BP4Deserializer::GetValueFromMetadata(core::Variable &variable, const std::vector &positions = itStep->second; // global values only read one block per step - const size_t blocksStart = (variable.m_ShapeID == ShapeID::GlobalArray) - ? blockInfo.Start.front() - : 0; + const size_t blocksStart = + (variable.m_ShapeID == ShapeID::GlobalArray) ? blockInfo.Start.front() : 0; - const size_t blocksCount = (variable.m_ShapeID == ShapeID::GlobalArray) - ? variable.m_Count.front() - : 1; + const size_t blocksCount = + (variable.m_ShapeID == ShapeID::GlobalArray) ? variable.m_Count.front() : 1; if (blocksStart + blocksCount > positions.size()) { helper::Throw( - "Toolkit", "format::bp::BP4Deserializer", - "GetValueFromMetadata", - "selection Start {" + std::to_string(blocksStart) + - "} and Count {" + std::to_string(blocksCount) + + "Toolkit", "format::bp::BP4Deserializer", "GetValueFromMetadata", + "selection Start {" + std::to_string(blocksStart) + "} and Count {" + + std::to_string(blocksCount) + "} (requested) is out of bounds of (available) Shape {" + - std::to_string(positions.size()) + "} for relative step " + - std::to_string(s) + - " , when reading 1D global array variable " + - variable.m_Name + ", in call to Get"); + std::to_string(positions.size()) + "} for relative step " + std::to_string(s) + + " , when reading 1D global array variable " + variable.m_Name + + ", in call to Get"); } size_t irrelevant; for (size_t b = blocksStart; b < blocksStart + blocksCount; ++b) { size_t localPosition = positions[b]; - const Characteristics characteristics = - ReadElementIndexCharacteristics( - buffer, localPosition, type_string, irrelevant, false, - m_Minifooter.IsLittleEndian); + const Characteristics characteristics = ReadElementIndexCharacteristics( + buffer, localPosition, type_string, irrelevant, false, m_Minifooter.IsLittleEndian); data[dataCounter] = characteristics.Statistics.Value; ++dataCounter; @@ -510,18 +461,17 @@ void BP4Deserializer::GetValueFromMetadata(core::Variable &variable, } template -void BP4Deserializer::PreDataRead( - core::Variable &variable, typename core::Variable::BPInfo &blockInfo, - const helper::SubStreamBoxInfo &subStreamBoxInfo, char *&buffer, - size_t &payloadSize, size_t &payloadOffset, const size_t threadID) +void BP4Deserializer::PreDataRead(core::Variable &variable, + typename core::Variable::BPInfo &blockInfo, + const helper::SubStreamBoxInfo &subStreamBoxInfo, char *&buffer, + size_t &payloadSize, size_t &payloadOffset, const size_t threadID) { if (subStreamBoxInfo.OperationsInfo.size() > 0) { const helper::BlockOperationInfo &blockOperationInfo = InitPostOperatorBlockData(subStreamBoxInfo.OperationsInfo); - m_ThreadBuffers[threadID][1].resize(blockOperationInfo.PayloadSize, - '\0'); + m_ThreadBuffers[threadID][1].resize(blockOperationInfo.PayloadSize, '\0'); buffer = m_ThreadBuffers[threadID][1].data(); @@ -539,10 +489,10 @@ void BP4Deserializer::PreDataRead( } template -void BP4Deserializer::PostDataRead( - core::Variable &variable, typename core::Variable::BPInfo &blockInfo, - const helper::SubStreamBoxInfo &subStreamBoxInfo, - const bool isRowMajorDestination, const size_t threadID) +void BP4Deserializer::PostDataRead(core::Variable &variable, + typename core::Variable::BPInfo &blockInfo, + const helper::SubStreamBoxInfo &subStreamBoxInfo, + const bool isRowMajorDestination, const size_t threadID) { if (subStreamBoxInfo.OperationsInfo.size() > 0) { @@ -552,8 +502,7 @@ void BP4Deserializer::PostDataRead( InitPostOperatorBlockData(subStreamBoxInfo.OperationsInfo); const size_t preOpPayloadSize = - helper::GetTotalSize(blockOperationInfo.PreCount) * - blockOperationInfo.PreSizeOf; + helper::GetTotalSize(blockOperationInfo.PreCount) * blockOperationInfo.PreSizeOf; m_ThreadBuffers[threadID][0].resize(preOpPayloadSize); // get original block back @@ -569,12 +518,11 @@ void BP4Deserializer::PostDataRead( break; } } - core::Decompress(postOpData, blockOperationInfo.PayloadSize, - preOpData, blockInfo.MemSpace, op); + core::Decompress(postOpData, blockOperationInfo.PayloadSize, preOpData, + blockInfo.MemSpace, op); // clip block to match selection - helper::ClipVector(m_ThreadBuffers[threadID][0], - subStreamBoxInfo.Seeks.first, + helper::ClipVector(m_ThreadBuffers[threadID][0], subStreamBoxInfo.Seeks.first, subStreamBoxInfo.Seeks.second); } else @@ -587,8 +535,7 @@ void BP4Deserializer::PostDataRead( #ifdef ADIOS2_HAVE_ENDIAN_REVERSE const bool endianReverse = - (helper::IsLittleEndian() != m_Minifooter.IsLittleEndian) ? true - : false; + (helper::IsLittleEndian() != m_Minifooter.IsLittleEndian) ? true : false; #else constexpr bool endianReverse = false; #endif @@ -602,24 +549,22 @@ void BP4Deserializer::PostDataRead( { if (endianReverse) { - helper::Throw( - "Toolkit", "format::bp::BP4Deserializer", "PostDataRead", - "endianReverse " - "not supported with MemorySelection"); + helper::Throw("Toolkit", "format::bp::BP4Deserializer", + "PostDataRead", + "endianReverse " + "not supported with MemorySelection"); } if (m_ReverseDimensions) { - helper::Throw( - "Toolkit", "format::bp::BP4Deserializer", "PostDataRead", - "ReverseDimensions not supported with " - "MemorySelection"); + helper::Throw("Toolkit", "format::bp::BP4Deserializer", + "PostDataRead", + "ReverseDimensions not supported with " + "MemorySelection"); } - helper::DimsArray intersectStart( - subStreamBoxInfo.IntersectionBox.first); - helper::DimsArray intersectCount( - subStreamBoxInfo.IntersectionBox.second); + helper::DimsArray intersectStart(subStreamBoxInfo.IntersectionBox.first); + helper::DimsArray intersectCount(subStreamBoxInfo.IntersectionBox.second); helper::DimsArray blockStart(subStreamBoxInfo.BlockBox.first); helper::DimsArray blockCount(subStreamBoxInfo.BlockBox.second); helper::DimsArray memoryStart(blockInfoStart); @@ -632,25 +577,22 @@ void BP4Deserializer::PostDataRead( intersectStart[d] += blockInfo.MemoryStart[d]; blockStart[d] += blockInfo.MemoryStart[d]; } - helper::NdCopy(m_ThreadBuffers[threadID][0].data(), intersectStart, - intersectCount, true, true, - reinterpret_cast(blockInfo.Data), intersectStart, - intersectCount, true, true, sizeof(T), intersectStart, - blockCount, memoryStart, - helper::DimsArray(blockInfo.MemoryCount), false); + helper::NdCopy(m_ThreadBuffers[threadID][0].data(), intersectStart, intersectCount, true, + true, reinterpret_cast(blockInfo.Data), intersectStart, + intersectCount, true, true, sizeof(T), intersectStart, blockCount, + memoryStart, helper::DimsArray(blockInfo.MemoryCount), false); } else { - helper::ClipContiguousMemory( - blockInfo.Data, blockInfoStart, blockInfo.Count, - m_ThreadBuffers[threadID][0].data(), subStreamBoxInfo.BlockBox, - subStreamBoxInfo.IntersectionBox, m_IsRowMajor, m_ReverseDimensions, - endianReverse, blockInfo.MemSpace); + helper::ClipContiguousMemory(blockInfo.Data, blockInfoStart, blockInfo.Count, + m_ThreadBuffers[threadID][0].data(), subStreamBoxInfo.BlockBox, + subStreamBoxInfo.IntersectionBox, m_IsRowMajor, + m_ReverseDimensions, endianReverse, blockInfo.MemSpace); } } -void BP4Deserializer::BackCompatDecompress( - const helper::SubStreamBoxInfo &subStreamBoxInfo, const size_t threadID) +void BP4Deserializer::BackCompatDecompress(const helper::SubStreamBoxInfo &subStreamBoxInfo, + const size_t threadID) { // Files made before 2.8 have incompatible compression operators // Add backward compatible fixes here @@ -658,8 +600,7 @@ void BP4Deserializer::BackCompatDecompress( InitPostOperatorBlockData(subStreamBoxInfo.OperationsInfo); const size_t preOpPayloadSize = - helper::GetTotalSize(blockOperationInfo.PreCount) * - blockOperationInfo.PreSizeOf; + helper::GetTotalSize(blockOperationInfo.PreCount) * blockOperationInfo.PreSizeOf; m_ThreadBuffers[threadID][0].resize(preOpPayloadSize); std::string opType = blockOperationInfo.Info.at("Type"); @@ -668,15 +609,13 @@ void BP4Deserializer::BackCompatDecompress( char *preOpData = m_ThreadBuffers[threadID][0].data(); const char *postOpData = m_ThreadBuffers[threadID][1].data(); // get the right bp4Op - std::shared_ptr bp4Op = - SetBPBackCompatOperation(opType); + std::shared_ptr bp4Op = SetBPBackCompatOperation(opType); if (bp4Op) { bp4Op->GetData(postOpData, blockOperationInfo, preOpData); // clip block to match selection - helper::ClipVector(m_ThreadBuffers[threadID][0], - subStreamBoxInfo.Seeks.first, + helper::ClipVector(m_ThreadBuffers[threadID][0], subStreamBoxInfo.Seeks.first, subStreamBoxInfo.Seeks.second); } else @@ -695,35 +634,30 @@ template std::map::BPInfo>> BP4Deserializer::AllStepsBlocksInfo(const core::Variable &variable) const { - std::map::BPInfo>> - allStepsBlocksInfo; + std::map::BPInfo>> allStepsBlocksInfo; for (const auto &pair : variable.m_AvailableStepBlockIndexOffsets) { const size_t step = pair.first; const std::vector &blockPositions = pair.second; // bp4 index starts at 1 - allStepsBlocksInfo[step - 1] = - BlocksInfoCommon(variable, blockPositions); + allStepsBlocksInfo[step - 1] = BlocksInfoCommon(variable, blockPositions); } return allStepsBlocksInfo; } template std::vector::BPInfo>> -BP4Deserializer::AllRelativeStepsBlocksInfo( - const core::Variable &variable) const +BP4Deserializer::AllRelativeStepsBlocksInfo(const core::Variable &variable) const { - std::vector::BPInfo>> - allRelativeStepsBlocksInfo( - variable.m_AvailableStepBlockIndexOffsets.size()); + std::vector::BPInfo>> allRelativeStepsBlocksInfo( + variable.m_AvailableStepBlockIndexOffsets.size()); size_t relativeStep = 0; for (const auto &pair : variable.m_AvailableStepBlockIndexOffsets) { const std::vector &blockPositions = pair.second; - allRelativeStepsBlocksInfo[relativeStep] = - BlocksInfoCommon(variable, blockPositions); + allRelativeStepsBlocksInfo[relativeStep] = BlocksInfoCommon(variable, blockPositions); ++relativeStep; } return allRelativeStepsBlocksInfo; @@ -731,8 +665,7 @@ BP4Deserializer::AllRelativeStepsBlocksInfo( template std::vector::BPInfo> -BP4Deserializer::BlocksInfo(const core::Variable &variable, - const size_t step) const +BP4Deserializer::BlocksInfo(const core::Variable &variable, const size_t step) const { // bp4 format starts at 1 auto itStep = variable.m_AvailableStepBlockIndexOffsets.find(step + 1); @@ -744,34 +677,32 @@ BP4Deserializer::BlocksInfo(const core::Variable &variable, } template -void BP4Deserializer::ClipContiguousMemory( - typename core::Variable::BPInfo &blockInfo, - const std::vector &contiguousMemory, const Box &blockBox, - const Box &intersectionBox) const +void BP4Deserializer::ClipContiguousMemory(typename core::Variable::BPInfo &blockInfo, + const std::vector &contiguousMemory, + const Box &blockBox, + const Box &intersectionBox) const { - helper::ClipContiguousMemory( - blockInfo.Data, blockInfo.Start, blockInfo.Count, contiguousMemory, - blockBox, intersectionBox, m_IsRowMajor, m_ReverseDimensions); + helper::ClipContiguousMemory(blockInfo.Data, blockInfo.Start, blockInfo.Count, contiguousMemory, + blockBox, intersectionBox, m_IsRowMajor, m_ReverseDimensions); } // PRIVATE template <> inline void BP4Deserializer::DefineVariableInEngineIOPerStep( - const ElementIndexHeader &header, core::Engine &engine, - const std::vector &buffer, size_t position, size_t step) const + const ElementIndexHeader &header, core::Engine &engine, const std::vector &buffer, + size_t position, size_t step) const { const size_t initialPosition = position; size_t irrelevant; const Characteristics characteristics = ReadElementIndexCharacteristics( - buffer, position, static_cast(header.DataType), - irrelevant, false, m_Minifooter.IsLittleEndian); + buffer, position, static_cast(header.DataType), irrelevant, false, + m_Minifooter.IsLittleEndian); const std::string variableName = - header.Path.empty() ? header.Name - : header.Path + PathSeparator + header.Name; + header.Path.empty() ? header.Name : header.Path + PathSeparator + header.Name; core::Variable *variable = nullptr; variable = engine.m_IO.InquireVariable(variableName); @@ -779,8 +710,7 @@ inline void BP4Deserializer::DefineVariableInEngineIOPerStep( { size_t endPositionCurrentStep = initialPosition - - (header.Name.size() + header.GroupName.size() + header.Path.size() + - 23) + + (header.Name.size() + header.GroupName.size() + header.Path.size() + 23) + static_cast(header.Length) + 4; position = initialPosition; // variable->m_AvailableStepsCount = step; @@ -795,8 +725,8 @@ inline void BP4Deserializer::DefineVariableInEngineIOPerStep( // read until step is found const Characteristics subsetCharacteristics = ReadElementIndexCharacteristics( - buffer, position, static_cast(header.DataType), - irrelevant, false, m_Minifooter.IsLittleEndian); + buffer, position, static_cast(header.DataType), irrelevant, false, + m_Minifooter.IsLittleEndian); if (subsetCharacteristics.EntryShapeID == ShapeID::LocalValue) { @@ -813,8 +743,7 @@ inline void BP4Deserializer::DefineVariableInEngineIOPerStep( } } - variable->m_AvailableStepBlockIndexOffsets[step].push_back( - subsetPosition); + variable->m_AvailableStepBlockIndexOffsets[step].push_back(subsetPosition); position = subsetPosition + subsetCharacteristics.EntryLength + 5; } return; @@ -825,8 +754,7 @@ inline void BP4Deserializer::DefineVariableInEngineIOPerStep( std::lock_guard lock(m_Mutex); variable = &engine.m_IO.DefineVariable(variableName); engine.RegisterCreatedVariable(variable); - variable->m_Value = - characteristics.Statistics.Value; // assigning first step + variable->m_Value = characteristics.Statistics.Value; // assigning first step if (characteristics.EntryShapeID == ShapeID::LocalValue) { @@ -838,21 +766,18 @@ inline void BP4Deserializer::DefineVariableInEngineIOPerStep( } else { - helper::Throw( - "Toolkit", "format::bp::BP4Deserializer", - "DefineVariableInEngineIOPerStep", - "variable " + variableName + - " of type string can't be an array, when " - "parsing metadata in call to Open"); + helper::Throw("Toolkit", "format::bp::BP4Deserializer", + "DefineVariableInEngineIOPerStep", + "variable " + variableName + + " of type string can't be an array, when " + "parsing metadata in call to Open"); } // going back to get variable index position variable->m_IndexStart = - initialPosition - (header.Name.size() + header.GroupName.size() + - header.Path.size() + 23); + initialPosition - (header.Name.size() + header.GroupName.size() + header.Path.size() + 23); - const size_t endPosition = - variable->m_IndexStart + static_cast(header.Length) + 4; + const size_t endPosition = variable->m_IndexStart + static_cast(header.Length) + 4; position = initialPosition; @@ -867,11 +792,10 @@ inline void BP4Deserializer::DefineVariableInEngineIOPerStep( // read until step is found const Characteristics subsetCharacteristics = ReadElementIndexCharacteristics( - buffer, position, static_cast(header.DataType), - irrelevant, false, m_Minifooter.IsLittleEndian); + buffer, position, static_cast(header.DataType), irrelevant, false, + m_Minifooter.IsLittleEndian); - const bool isNextStep = - stepsFound.insert(subsetCharacteristics.Statistics.Step).second; + const bool isNextStep = stepsFound.insert(subsetCharacteristics.Statistics.Step).second; // if new step is inserted if (isNextStep) @@ -894,8 +818,7 @@ inline void BP4Deserializer::DefineVariableInEngineIOPerStep( } } - variable->m_AvailableStepBlockIndexOffsets[currentStep].push_back( - subsetPosition); + variable->m_AvailableStepBlockIndexOffsets[currentStep].push_back(subsetPosition); position = subsetPosition + subsetCharacteristics.EntryLength + 5; } @@ -913,21 +836,20 @@ inline void BP4Deserializer::DefineVariableInEngineIOPerStep( /* Define the variable of each step when parsing the metadata */ template -void BP4Deserializer::DefineVariableInEngineIOPerStep( - const ElementIndexHeader &header, core::Engine &engine, - const std::vector &buffer, size_t position, size_t step) const +void BP4Deserializer::DefineVariableInEngineIOPerStep(const ElementIndexHeader &header, + core::Engine &engine, + const std::vector &buffer, + size_t position, size_t step) const { const size_t initialPosition = position; size_t irrelevant; - const Characteristics characteristics = - ReadElementIndexCharacteristics( - buffer, position, static_cast(header.DataType), - irrelevant, false, m_Minifooter.IsLittleEndian); + const Characteristics characteristics = ReadElementIndexCharacteristics( + buffer, position, static_cast(header.DataType), irrelevant, false, + m_Minifooter.IsLittleEndian); const std::string variableName = - header.Path.empty() ? header.Name - : header.Path + PathSeparator + header.Name; + header.Path.empty() ? header.Name : header.Path + PathSeparator + header.Name; core::Variable *variable = nullptr; { @@ -940,8 +862,7 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( { size_t endPositionCurrentStep = initialPosition - - (header.Name.size() + header.GroupName.size() + header.Path.size() + - 23) + + (header.Name.size() + header.GroupName.size() + header.Path.size() + 23) + static_cast(header.Length) + 4; position = initialPosition; // variable->m_AvailableStepsCount = step; @@ -952,11 +873,9 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( size_t joinedArrayStartValuePos; // read until step is found - const Characteristics subsetCharacteristics = - ReadElementIndexCharacteristics( - buffer, position, static_cast(header.DataType), - joinedArrayStartValuePos, false, - m_Minifooter.IsLittleEndian); + const Characteristics subsetCharacteristics = ReadElementIndexCharacteristics( + buffer, position, static_cast(header.DataType), joinedArrayStartValuePos, + false, m_Minifooter.IsLittleEndian); const T blockMin = characteristics.Statistics.IsValue ? subsetCharacteristics.Statistics.Value @@ -991,39 +910,32 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( } else if (subsetCharacteristics.EntryShapeID == ShapeID::JoinedArray) { - Dims shape = m_ReverseDimensions - ? Dims(subsetCharacteristics.Shape.rbegin(), - subsetCharacteristics.Shape.rend()) - : subsetCharacteristics.Shape; - const Dims count = - m_ReverseDimensions - ? Dims(subsetCharacteristics.Count.rbegin(), - subsetCharacteristics.Count.rend()) - : subsetCharacteristics.Count; + Dims shape = m_ReverseDimensions ? Dims(subsetCharacteristics.Shape.rbegin(), + subsetCharacteristics.Shape.rend()) + : subsetCharacteristics.Shape; + const Dims count = m_ReverseDimensions ? Dims(subsetCharacteristics.Count.rbegin(), + subsetCharacteristics.Count.rend()) + : subsetCharacteristics.Count; uint64_t newStart; if (variable->m_AvailableShapes[step].empty()) { - shape[variable->m_JoinedDimPos] = - count[variable->m_JoinedDimPos]; + shape[variable->m_JoinedDimPos] = count[variable->m_JoinedDimPos]; newStart = 0; } else { newStart = static_cast( - variable->m_AvailableShapes[step] - [variable->m_JoinedDimPos]); + variable->m_AvailableShapes[step][variable->m_JoinedDimPos]); // shape increases with each block shape[variable->m_JoinedDimPos] = - variable->m_AvailableShapes[step] - [variable->m_JoinedDimPos] + + variable->m_AvailableShapes[step][variable->m_JoinedDimPos] + count[variable->m_JoinedDimPos]; } // big hack: modify the metada in place, update the Start[i] // of the block char *src = reinterpret_cast(&newStart); - char *dst = - const_cast(&buffer[joinedArrayStartValuePos]); + char *dst = const_cast(&buffer[joinedArrayStartValuePos]); memcpy(dst, src, sizeof(uint64_t)); variable->m_Shape = shape; @@ -1033,17 +945,14 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( { // Shape definition is by the last block now, not the first // block - const Dims shape = - m_ReverseDimensions - ? Dims(subsetCharacteristics.Shape.rbegin(), - subsetCharacteristics.Shape.rend()) - : subsetCharacteristics.Shape; + const Dims shape = m_ReverseDimensions ? Dims(subsetCharacteristics.Shape.rbegin(), + subsetCharacteristics.Shape.rend()) + : subsetCharacteristics.Shape; variable->m_Shape = shape; variable->m_AvailableShapes[step] = shape; } - variable->m_AvailableStepBlockIndexOffsets[step].push_back( - subsetPosition); + variable->m_AvailableStepBlockIndexOffsets[step].push_back(subsetPosition); position = subsetPosition + subsetCharacteristics.EntryLength + 5; } return; @@ -1058,26 +967,22 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( break; } case (ShapeID::GlobalArray): { - const Dims shape = m_ReverseDimensions - ? Dims(characteristics.Shape.rbegin(), - characteristics.Shape.rend()) - : characteristics.Shape; - - variable = &engine.m_IO.DefineVariable( - variableName, shape, Dims(shape.size(), 0), shape); - variable->m_AvailableShapes[characteristics.Statistics.Step] = - variable->m_Shape; + const Dims shape = m_ReverseDimensions ? Dims(characteristics.Shape.rbegin(), + characteristics.Shape.rend()) + : characteristics.Shape; + + variable = + &engine.m_IO.DefineVariable(variableName, shape, Dims(shape.size(), 0), shape); + variable->m_AvailableShapes[characteristics.Statistics.Step] = variable->m_Shape; break; } case (ShapeID::JoinedArray): { Dims shape = m_ReverseDimensions - ? Dims(characteristics.Shape.rbegin(), - characteristics.Shape.rend()) + ? Dims(characteristics.Shape.rbegin(), characteristics.Shape.rend()) : characteristics.Shape; - const Dims count = m_ReverseDimensions - ? Dims(characteristics.Count.rbegin(), - characteristics.Count.rend()) - : characteristics.Count; + const Dims count = m_ReverseDimensions ? Dims(characteristics.Count.rbegin(), + characteristics.Count.rend()) + : characteristics.Count; size_t joinedDimPos = 0; for (size_t i = 0; i < shape.size(); ++i) { @@ -1088,34 +993,29 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( } } - variable = &engine.m_IO.DefineVariable( - variableName, shape, Dims(shape.size(), 0), shape); - variable->m_AvailableShapes[characteristics.Statistics.Step] = - variable->m_Shape; + variable = + &engine.m_IO.DefineVariable(variableName, shape, Dims(shape.size(), 0), shape); + variable->m_AvailableShapes[characteristics.Statistics.Step] = variable->m_Shape; variable->m_JoinedDimPos = joinedDimPos; break; } case (ShapeID::LocalValue): { - variable = - &engine.m_IO.DefineVariable(variableName, {1}, {0}, {1}); + variable = &engine.m_IO.DefineVariable(variableName, {1}, {0}, {1}); variable->m_ShapeID = ShapeID::LocalValue; break; } case (ShapeID::LocalArray): { - const Dims count = m_ReverseDimensions - ? Dims(characteristics.Count.rbegin(), - characteristics.Count.rend()) - : characteristics.Count; - variable = - &engine.m_IO.DefineVariable(variableName, {}, {}, count); + const Dims count = m_ReverseDimensions ? Dims(characteristics.Count.rbegin(), + characteristics.Count.rend()) + : characteristics.Count; + variable = &engine.m_IO.DefineVariable(variableName, {}, {}, count); break; } default: - helper::Throw( - "Toolkit", "format::bp::BP4Deserializer", - "DefineVariableInEngineIOPerStep", - "invalid ShapeID or not yet supported for variable " + - variableName + ", in call to Open"); + helper::Throw("Toolkit", "format::bp::BP4Deserializer", + "DefineVariableInEngineIOPerStep", + "invalid ShapeID or not yet supported for variable " + + variableName + ", in call to Open"); } // end switch engine.RegisterCreatedVariable(variable); @@ -1134,11 +1034,9 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( // going back to get variable index position variable->m_IndexStart = - initialPosition - (header.Name.size() + header.GroupName.size() + - header.Path.size() + 23); + initialPosition - (header.Name.size() + header.GroupName.size() + header.Path.size() + 23); - const size_t endPosition = - variable->m_IndexStart + static_cast(header.Length) + 4; + const size_t endPosition = variable->m_IndexStart + static_cast(header.Length) + 4; position = initialPosition; @@ -1151,10 +1049,9 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( size_t joinedArrayStartValuePos; // read until step is found - const Characteristics subsetCharacteristics = - ReadElementIndexCharacteristics( - buffer, position, static_cast(header.DataType), - joinedArrayStartValuePos, false, m_Minifooter.IsLittleEndian); + const Characteristics subsetCharacteristics = ReadElementIndexCharacteristics( + buffer, position, static_cast(header.DataType), joinedArrayStartValuePos, + false, m_Minifooter.IsLittleEndian); const T blockMin = characteristics.Statistics.IsValue ? subsetCharacteristics.Statistics.Value @@ -1163,8 +1060,7 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( ? subsetCharacteristics.Statistics.Value : subsetCharacteristics.Statistics.Max; - const bool isNextStep = - stepsFound.insert(subsetCharacteristics.Statistics.Step).second; + const bool isNextStep = stepsFound.insert(subsetCharacteristics.Statistics.Step).second; if (isNextStep) { @@ -1188,31 +1084,26 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( if (subsetCharacteristics.EntryShapeID == ShapeID::JoinedArray) { - Dims shape = m_ReverseDimensions - ? Dims(subsetCharacteristics.Shape.rbegin(), - subsetCharacteristics.Shape.rend()) - : subsetCharacteristics.Shape; - const Dims count = m_ReverseDimensions - ? Dims(subsetCharacteristics.Count.rbegin(), - subsetCharacteristics.Count.rend()) - : subsetCharacteristics.Count; + Dims shape = m_ReverseDimensions ? Dims(subsetCharacteristics.Shape.rbegin(), + subsetCharacteristics.Shape.rend()) + : subsetCharacteristics.Shape; + const Dims count = m_ReverseDimensions ? Dims(subsetCharacteristics.Count.rbegin(), + subsetCharacteristics.Count.rend()) + : subsetCharacteristics.Count; uint64_t newStart; if (isNextStep) { - shape[variable->m_JoinedDimPos] = - count[variable->m_JoinedDimPos]; + shape[variable->m_JoinedDimPos] = count[variable->m_JoinedDimPos]; newStart = 0; } else { newStart = static_cast( - variable->m_AvailableShapes[currentStep] - [variable->m_JoinedDimPos]); + variable->m_AvailableShapes[currentStep][variable->m_JoinedDimPos]); // shape increase with each block shape[variable->m_JoinedDimPos] = - variable->m_AvailableShapes[currentStep] - [variable->m_JoinedDimPos] + + variable->m_AvailableShapes[currentStep][variable->m_JoinedDimPos] + count[variable->m_JoinedDimPos]; } // big hack: modify the metada in place, update the Start[i] @@ -1228,17 +1119,15 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( // Shape definition is by the last block now, not the first block if (subsetCharacteristics.EntryShapeID == ShapeID::GlobalArray) { - const Dims shape = m_ReverseDimensions - ? Dims(subsetCharacteristics.Shape.rbegin(), - subsetCharacteristics.Shape.rend()) - : subsetCharacteristics.Shape; + const Dims shape = m_ReverseDimensions ? Dims(subsetCharacteristics.Shape.rbegin(), + subsetCharacteristics.Shape.rend()) + : subsetCharacteristics.Shape; variable->m_Shape = shape; variable->m_AvailableShapes[currentStep] = shape; } // update min max for global values only if new step is found - if ((isNextStep && - subsetCharacteristics.EntryShapeID == ShapeID::GlobalValue) || + if ((isNextStep && subsetCharacteristics.EntryShapeID == ShapeID::GlobalValue) || (subsetCharacteristics.EntryShapeID != ShapeID::GlobalValue)) { if (helper::LessThan(blockMin, variable->m_Min)) @@ -1252,8 +1141,7 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( } } - variable->m_AvailableStepBlockIndexOffsets[currentStep].push_back( - subsetPosition); + variable->m_AvailableStepBlockIndexOffsets[currentStep].push_back(subsetPosition); position = subsetPosition + subsetCharacteristics.EntryLength + 5; } @@ -1272,15 +1160,15 @@ void BP4Deserializer::DefineVariableInEngineIOPerStep( } template -void BP4Deserializer::DefineAttributeInEngineIO( - const ElementIndexHeader &header, core::Engine &engine, - const std::vector &buffer, size_t position) const +void BP4Deserializer::DefineAttributeInEngineIO(const ElementIndexHeader &header, + core::Engine &engine, + const std::vector &buffer, + size_t position) const { size_t irrelevant; - const Characteristics characteristics = - ReadElementIndexCharacteristics( - buffer, position, static_cast(header.DataType), - irrelevant, false, m_Minifooter.IsLittleEndian); + const Characteristics characteristics = ReadElementIndexCharacteristics( + buffer, position, static_cast(header.DataType), irrelevant, false, + m_Minifooter.IsLittleEndian); std::string attributeName(header.Name); if (!header.Path.empty()) @@ -1290,21 +1178,19 @@ void BP4Deserializer::DefineAttributeInEngineIO( if (characteristics.Statistics.IsValue) { - engine.m_IO.DefineAttribute( - attributeName, characteristics.Statistics.Value, "", "", true); + engine.m_IO.DefineAttribute(attributeName, characteristics.Statistics.Value, "", "", + true); } else { - engine.m_IO.DefineAttribute( - attributeName, characteristics.Statistics.Values.data(), - characteristics.Statistics.Values.size(), "", "", true); + engine.m_IO.DefineAttribute(attributeName, characteristics.Statistics.Values.data(), + characteristics.Statistics.Values.size(), "", "", true); } } template std::map -BP4Deserializer::GetSyncVariableSubFileInfo( - const core::Variable &variable) const +BP4Deserializer::GetSyncVariableSubFileInfo(const core::Variable &variable) const { std::map variableSubFileInfo; variableSubFileInfo[variable.m_Name] = GetSubFileInfo(variable); @@ -1319,8 +1205,7 @@ void BP4Deserializer::GetDeferredVariable(core::Variable &variable, T *data) } template -helper::SubFileInfoMap -BP4Deserializer::GetSubFileInfo(const core::Variable &variable) const +helper::SubFileInfoMap BP4Deserializer::GetSubFileInfo(const core::Variable &variable) const { helper::SubFileInfoMap infoMap; @@ -1329,13 +1214,12 @@ BP4Deserializer::GetSubFileInfo(const core::Variable &variable) const const size_t stepStart = variable.m_StepsStart + 1; const size_t stepEnd = stepStart + variable.m_StepsCount; // exclusive - const Box selectionBox = helper::StartEndBox( - variable.m_Start, variable.m_Count, m_ReverseDimensions); + const Box selectionBox = + helper::StartEndBox(variable.m_Start, variable.m_Count, m_ReverseDimensions); for (size_t step = stepStart; step < stepEnd; ++step) { - auto itBlockStarts = - variable.m_AvailableStepBlockIndexOffsets.find(step); + auto itBlockStarts = variable.m_AvailableStepBlockIndexOffsets.find(step); if (itBlockStarts == variable.m_AvailableStepBlockIndexOffsets.end()) { continue; @@ -1348,19 +1232,16 @@ BP4Deserializer::GetSubFileInfo(const core::Variable &variable) const { size_t irrelevant; const Characteristics blockCharacteristics = - ReadElementIndexCharacteristics( - buffer, blockPosition, TypeTraits::type_enum, irrelevant, - false, m_Minifooter.IsLittleEndian); + ReadElementIndexCharacteristics(buffer, blockPosition, TypeTraits::type_enum, + irrelevant, false, m_Minifooter.IsLittleEndian); // check if they intersect helper::SubFileInfo info; - info.BlockBox = helper::StartEndBox(blockCharacteristics.Start, - blockCharacteristics.Count); - info.IntersectionBox = - helper::IntersectionBox(selectionBox, info.BlockBox); + info.BlockBox = + helper::StartEndBox(blockCharacteristics.Start, blockCharacteristics.Count); + info.IntersectionBox = helper::IntersectionBox(selectionBox, info.BlockBox); - if (info.IntersectionBox.first.empty() || - info.IntersectionBox.second.empty()) + if (info.IntersectionBox.first.empty() || info.IntersectionBox.second.empty()) { continue; } @@ -1368,19 +1249,16 @@ BP4Deserializer::GetSubFileInfo(const core::Variable &variable) const // count) info.Seeks.first = blockCharacteristics.Statistics.PayloadOffset + - helper::LinearIndex(info.BlockBox, info.IntersectionBox.first, - m_IsRowMajor) * + helper::LinearIndex(info.BlockBox, info.IntersectionBox.first, m_IsRowMajor) * sizeof(T); info.Seeks.second = blockCharacteristics.Statistics.PayloadOffset + - (helper::LinearIndex(info.BlockBox, info.IntersectionBox.second, - m_IsRowMajor) + + (helper::LinearIndex(info.BlockBox, info.IntersectionBox.second, m_IsRowMajor) + 1) * sizeof(T); - const size_t fileIndex = - static_cast(blockCharacteristics.Statistics.FileIndex); + const size_t fileIndex = static_cast(blockCharacteristics.Statistics.FileIndex); infoMap[fileIndex][step].push_back(std::move(info)); } @@ -1392,9 +1270,8 @@ BP4Deserializer::GetSubFileInfo(const core::Variable &variable) const // PRIVATE template std::vector::BPInfo> -BP4Deserializer::BlocksInfoCommon( - const core::Variable &variable, - const std::vector &blocksIndexOffsets) const +BP4Deserializer::BlocksInfoCommon(const core::Variable &variable, + const std::vector &blocksIndexOffsets) const { std::vector::BPInfo> blocksInfo; blocksInfo.reserve(blocksIndexOffsets.size()); @@ -1405,10 +1282,9 @@ BP4Deserializer::BlocksInfoCommon( size_t position = blockIndexOffset; size_t irrelevant; - const Characteristics blockCharacteristics = - ReadElementIndexCharacteristics( - m_Metadata.m_Buffer, position, TypeTraits::type_enum, - irrelevant, false, m_Minifooter.IsLittleEndian); + const Characteristics blockCharacteristics = ReadElementIndexCharacteristics( + m_Metadata.m_Buffer, position, TypeTraits::type_enum, irrelevant, false, + m_Minifooter.IsLittleEndian); typename core::Variable::BPInfo blockInfo; blockInfo.Shape = blockCharacteristics.Shape; @@ -1435,11 +1311,9 @@ BP4Deserializer::BlocksInfoCommon( blockInfo.Min = blockCharacteristics.Statistics.Min; blockInfo.Max = blockCharacteristics.Statistics.Max; blockInfo.MinMaxs = blockCharacteristics.Statistics.MinMaxs; - blockInfo.SubBlockInfo = - blockCharacteristics.Statistics.SubBlockInfo; + blockInfo.SubBlockInfo = blockCharacteristics.Statistics.SubBlockInfo; } - if (blockInfo.Shape.size() == 1 && - blockInfo.Shape.front() == LocalValueDim) + if (blockInfo.Shape.size() == 1 && blockInfo.Shape.front() == LocalValueDim) { blockInfo.Shape = Dims{blocksIndexOffsets.size()}; blockInfo.Count = Dims{1}; @@ -1448,8 +1322,7 @@ BP4Deserializer::BlocksInfoCommon( blockInfo.Max = blockCharacteristics.Statistics.Value; } // bp index starts at 1 - blockInfo.Step = - static_cast(blockCharacteristics.Statistics.Step - 1); + blockInfo.Step = static_cast(blockCharacteristics.Statistics.Step - 1); blockInfo.BlockID = n; blocksInfo.push_back(blockInfo); ++n; diff --git a/source/adios2/toolkit/format/bp/bp4/BP4Serializer.cpp b/source/adios2/toolkit/format/bp/bp4/BP4Serializer.cpp index f21f4315a8..fc28640bae 100644 --- a/source/adios2/toolkit/format/bp/bp4/BP4Serializer.cpp +++ b/source/adios2/toolkit/format/bp/bp4/BP4Serializer.cpp @@ -36,11 +36,10 @@ BP4Serializer::BP4Serializer(helper::Comm const &comm) } /*generate the header for the metadata index file*/ -void BP4Serializer::MakeHeader(BufferSTL &b, const std::string fileType, - const bool isActive) +void BP4Serializer::MakeHeader(BufferSTL &b, const std::string fileType, const bool isActive) { - auto lf_CopyVersionChar = [](const std::string version, - std::vector &buffer, size_t &position) { + auto lf_CopyVersionChar = [](const std::string version, std::vector &buffer, + size_t &position) { helper::CopyToBuffer(buffer, position, version.c_str()); }; @@ -49,12 +48,11 @@ void BP4Serializer::MakeHeader(BufferSTL &b, const std::string fileType, auto &absolutePosition = b.m_AbsolutePosition; if (position > 0) { - helper::Throw( - "Toolkit", "format::bp::BP4Serializer", "MakeHeader", - "can only be called for an empty " - "buffer. This one for " + - fileType + " already has content of " + - std::to_string(position) + " bytes."); + helper::Throw("Toolkit", "format::bp::BP4Serializer", "MakeHeader", + "can only be called for an empty " + "buffer. This one for " + + fileType + " already has content of " + + std::to_string(position) + " bytes."); } if (b.GetAvailableSize() < 64) @@ -69,32 +67,28 @@ void BP4Serializer::MakeHeader(BufferSTL &b, const std::string fileType, // byte 0-31: Readable tag if (position != m_VersionTagPosition) { - helper::Throw( - "Toolkit", "format::bp::BP4Serializer", "MakeHeader", - "Version Tag " - "position mismatch"); + helper::Throw("Toolkit", "format::bp::BP4Serializer", "MakeHeader", + "Version Tag " + "position mismatch"); } - std::string versionLongTag("ADIOS-BP v" + majorVersion + "." + - minorVersion + "." + patchVersion + " "); + std::string versionLongTag("ADIOS-BP v" + majorVersion + "." + minorVersion + "." + + patchVersion + " "); size_t maxTypeLen = m_VersionTagLength - versionLongTag.size(); const std::string fileTypeStr = fileType.substr(0, maxTypeLen); versionLongTag += fileTypeStr; const size_t versionLongTagSize = versionLongTag.size(); if (versionLongTagSize < m_VersionTagLength) { - helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), - versionLongTagSize); + helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), versionLongTagSize); position += m_VersionTagLength - versionLongTagSize; } else if (versionLongTagSize > m_VersionTagLength) { - helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), - m_VersionTagLength); + helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), m_VersionTagLength); } else { - helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), - m_VersionTagLength); + helper::CopyToBuffer(buffer, position, versionLongTag.c_str(), m_VersionTagLength); } // byte 32-35: MAJOR MINOR PATCH Unused @@ -111,10 +105,9 @@ void BP4Serializer::MakeHeader(BufferSTL &b, const std::string fileType, // byte 36: endianness if (position != m_EndianFlagPosition) { - helper::Throw( - "Toolkit", "format::bp::BP4Serializer", "MakeHeader", - "Endian Flag " - "position mismatch"); + helper::Throw("Toolkit", "format::bp::BP4Serializer", "MakeHeader", + "Endian Flag " + "position mismatch"); } const uint8_t endianness = helper::IsLittleEndian() ? 0 : 1; helper::CopyToBuffer(buffer, position, &endianness); @@ -122,10 +115,9 @@ void BP4Serializer::MakeHeader(BufferSTL &b, const std::string fileType, // byte 37: BP Version 4 if (position != m_BPVersionPosition) { - helper::Throw( - "Toolkit", "format::bp::BP4Serializer", "MakeHeader", - "Active Flag " - "position mismatch"); + helper::Throw("Toolkit", "format::bp::BP4Serializer", "MakeHeader", + "Active Flag " + "position mismatch"); } const uint8_t version = 4; helper::CopyToBuffer(buffer, position, &version); @@ -133,10 +125,9 @@ void BP4Serializer::MakeHeader(BufferSTL &b, const std::string fileType, // byte 38: Active flag (used in Index Table only) if (position != m_ActiveFlagPosition) { - helper::Throw( - "Toolkit", "format::bp::BP4Serializer", "MakeHeader", - "Active Flag " - "position mismatch"); + helper::Throw("Toolkit", "format::bp::BP4Serializer", "MakeHeader", + "Active Flag " + "position mismatch"); } const uint8_t activeFlag = (isActive ? 1 : 0); helper::CopyToBuffer(buffer, position, &activeFlag); @@ -149,9 +140,8 @@ void BP4Serializer::MakeHeader(BufferSTL &b, const std::string fileType, absolutePosition = position; } -void BP4Serializer::PutProcessGroupIndex( - const std::string &ioName, const std::string hostLanguage, - const std::vector &transportsTypes) noexcept +void BP4Serializer::PutProcessGroupIndex(const std::string &ioName, const std::string hostLanguage, + const std::vector &transportsTypes) noexcept { m_Profiler.Start("buffering"); std::vector &metadataBuffer = m_MetadataSet.PGIndex.Buffer; @@ -174,8 +164,7 @@ void BP4Serializer::PutProcessGroupIndex( PutNameRecord(ioName, metadataBuffer); // write if data is column major in metadata and data - const char columnMajor = - (helper::IsRowMajor(hostLanguage) == false) ? 'y' : 'n'; + const char columnMajor = (helper::IsRowMajor(hostLanguage) == false) ? 'y' : 'n'; helper::InsertToBuffer(metadataBuffer, &columnMajor); helper::CopyToBuffer(dataBuffer, dataPosition, &columnMajor); @@ -198,12 +187,11 @@ void BP4Serializer::PutProcessGroupIndex( helper::CopyToBuffer(dataBuffer, dataPosition, &m_MetadataSet.TimeStep); // offset to pg in data in metadata which is the current absolute position - helper::InsertU64(metadataBuffer, - m_Data.m_AbsolutePosition + m_PreDataFileLength); + helper::InsertU64(metadataBuffer, m_Data.m_AbsolutePosition + m_PreDataFileLength); // Back to writing metadata pg index length (length of group) - const uint16_t metadataPGIndexLength = static_cast( - metadataBuffer.size() - metadataPGLengthPosition - 2); + const uint16_t metadataPGIndexLength = + static_cast(metadataBuffer.size() - metadataPGLengthPosition - 2); size_t backPosition = metadataPGLengthPosition; helper::CopyToBuffer(metadataBuffer, backPosition, &metadataPGIndexLength); @@ -326,8 +314,7 @@ void BP4Serializer::ResetAllIndices() /* Reset the metadata index table*/ void BP4Serializer::ResetMetadataIndexTable() { m_MetadataIndexTable.clear(); } -void BP4Serializer::AggregateCollectiveMetadata(helper::Comm const &comm, - BufferSTL &bufferSTL, +void BP4Serializer::AggregateCollectiveMetadata(helper::Comm const &comm, BufferSTL &bufferSTL, const bool inMetadataBuffer) { m_Profiler.Start("buffering"); @@ -367,10 +354,8 @@ void BP4Serializer::SerializeDataBuffer(core::IO &io) noexcept // without record itself and vars count // Note: m_MetadataSet.DataPGVarsCount has been incremented by 4 // in previous CopyToBuffer operation! - const uint64_t varsLength = - position - m_MetadataSet.DataPGVarsCountPosition - 8; - helper::CopyToBuffer(buffer, m_MetadataSet.DataPGVarsCountPosition, - &varsLength); + const uint64_t varsLength = position - m_MetadataSet.DataPGVarsCountPosition - 8; + helper::CopyToBuffer(buffer, m_MetadataSet.DataPGVarsCountPosition, &varsLength); // each attribute is only written to output once size_t attributesSizeInData = GetAttributesSizeInData(io); @@ -409,47 +394,42 @@ void BP4Serializer::SerializeDataBuffer(core::IO &io) noexcept // Finish writing pg group length INCLUDING the record itself and // including the closing padding but NOT the opening [PGI const uint64_t dataPGLength = position - m_MetadataSet.DataPGLengthPosition; - helper::CopyToBuffer(buffer, m_MetadataSet.DataPGLengthPosition, - &dataPGLength); + helper::CopyToBuffer(buffer, m_MetadataSet.DataPGLengthPosition, &dataPGLength); m_MetadataSet.DataPGIsOpen = false; } -void BP4Serializer::SerializeMetadataInData(const bool updateAbsolutePosition, - const bool inData) +void BP4Serializer::SerializeMetadataInData(const bool updateAbsolutePosition, const bool inData) { - auto lf_SetIndexCountLength = - [](std::unordered_map &indices, - uint32_t &count, uint64_t &length) { - count = static_cast(indices.size()); - length = 0; - for (auto &indexPair : indices) // set each index length - { - auto &indexBuffer = indexPair.second.Buffer; - // const uint32_t indexLength = - // static_cast(indexBuffer.size() - 4); - // size_t indexLengthPosition = 0; - // helper::CopyToBuffer(indexBuffer, indexLengthPosition, - // &indexLength); - - length += indexBuffer.size(); // overall length - } - }; + auto lf_SetIndexCountLength = [](std::unordered_map &indices, + uint32_t &count, uint64_t &length) { + count = static_cast(indices.size()); + length = 0; + for (auto &indexPair : indices) // set each index length + { + auto &indexBuffer = indexPair.second.Buffer; + // const uint32_t indexLength = + // static_cast(indexBuffer.size() - 4); + // size_t indexLengthPosition = 0; + // helper::CopyToBuffer(indexBuffer, indexLengthPosition, + // &indexLength); + + length += indexBuffer.size(); // overall length + } + }; - auto lf_FlattenIndices = - [](const uint32_t count, const uint64_t length, - const std::unordered_map &indices, - std::vector &buffer, size_t &position) { - helper::CopyToBuffer(buffer, position, &count); - helper::CopyToBuffer(buffer, position, &length); + auto lf_FlattenIndices = [](const uint32_t count, const uint64_t length, + const std::unordered_map &indices, + std::vector &buffer, size_t &position) { + helper::CopyToBuffer(buffer, position, &count); + helper::CopyToBuffer(buffer, position, &length); - for (const auto &indexPair : indices) // set each index length - { - const auto &indexBuffer = indexPair.second.Buffer; - helper::CopyToBuffer(buffer, position, indexBuffer.data(), - indexBuffer.size()); - } - }; + for (const auto &indexPair : indices) // set each index length + { + const auto &indexBuffer = indexPair.second.Buffer; + helper::CopyToBuffer(buffer, position, indexBuffer.data(), indexBuffer.size()); + } + }; // Finish writing metadata counts and lengths // PG Index @@ -464,17 +444,16 @@ void BP4Serializer::SerializeMetadataInData(const bool updateAbsolutePosition, // attribute index count and length, and each index length uint32_t attributesCount = 0; uint64_t attributesLength = 0; - lf_SetIndexCountLength(m_MetadataSet.AttributesIndices, attributesCount, - attributesLength); + lf_SetIndexCountLength(m_MetadataSet.AttributesIndices, attributesCount, attributesLength); if (!inData) { return; } - const size_t footerSize = static_cast( - (pgLength + 16) + (varsLength + 12) + (attributesLength + 12) + - m_MetadataSet.MiniFooterSize); + const size_t footerSize = + static_cast((pgLength + 16) + (varsLength + 12) + (attributesLength + 12) + + m_MetadataSet.MiniFooterSize); auto &buffer = m_Data.m_Buffer; auto &position = m_Data.m_Position; @@ -482,8 +461,7 @@ void BP4Serializer::SerializeMetadataInData(const bool updateAbsolutePosition, // reserve data to fit metadata, // must replace with growth buffer strategy? - m_Data.Resize(position + footerSize, - " when writing metadata in bp data buffer"); + m_Data.Resize(position + footerSize, " when writing metadata in bp data buffer"); // write pg index helper::CopyToBuffer(buffer, position, &pgCount); @@ -492,21 +470,18 @@ void BP4Serializer::SerializeMetadataInData(const bool updateAbsolutePosition, static_cast(pgLength)); // Vars indices - lf_FlattenIndices(varsCount, varsLength, m_MetadataSet.VarsIndices, buffer, - position); + lf_FlattenIndices(varsCount, varsLength, m_MetadataSet.VarsIndices, buffer, position); // Attribute indices - lf_FlattenIndices(attributesCount, attributesLength, - m_MetadataSet.AttributesIndices, buffer, position); + lf_FlattenIndices(attributesCount, attributesLength, m_MetadataSet.AttributesIndices, buffer, + position); // getting absolute offset start, minifooter is 28 bytes for now const uint64_t pgIndexStart = static_cast(absolutePosition); - const uint64_t variablesIndexStart = - static_cast(pgIndexStart + (pgLength + 16)); + const uint64_t variablesIndexStart = static_cast(pgIndexStart + (pgLength + 16)); const uint64_t attributesIndexStart = static_cast(variablesIndexStart + (varsLength + 12)); - PutMinifooter(pgIndexStart, variablesIndexStart, attributesIndexStart, - buffer, position); + PutMinifooter(pgIndexStart, variablesIndexStart, attributesIndexStart, buffer, position); if (updateAbsolutePosition) { @@ -542,8 +517,7 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, } auto lf_IndicesSize = - [&](const std::unordered_map &indices) - -> size_t + [&](const std::unordered_map &indices) -> size_t { size_t indicesSize = 0; @@ -555,64 +529,52 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, }; auto lf_SerializeIndices = - [&](const std::unordered_map &indices, - size_t &position) + [&](const std::unordered_map &indices, size_t &position) { for (const auto &indexPair : indices) { const auto &buffer = indexPair.second.Buffer; - helper::CopyToBuffer(m_SerializedIndices, position, buffer.data(), - buffer.size()); + helper::CopyToBuffer(m_SerializedIndices, position, buffer.data(), buffer.size()); } }; - auto lf_SerializeAllIndices = [&](helper::Comm const &comm, - const int rank) { + auto lf_SerializeAllIndices = [&](helper::Comm const &comm, const int rank) { const size_t pgIndicesSize = m_MetadataSet.PGIndex.Buffer.size(); - const size_t variablesIndicesSize = - lf_IndicesSize(m_MetadataSet.VarsIndices); - const size_t attributesIndicesSize = - lf_IndicesSize(m_MetadataSet.AttributesIndices); + const size_t variablesIndicesSize = lf_IndicesSize(m_MetadataSet.VarsIndices); + const size_t attributesIndicesSize = lf_IndicesSize(m_MetadataSet.AttributesIndices); // first pre-allocate - const size_t serializedIndicesSize = 8 * 4 + pgIndicesSize + - variablesIndicesSize + - attributesIndicesSize; + const size_t serializedIndicesSize = + 8 * 4 + pgIndicesSize + variablesIndicesSize + attributesIndicesSize; m_SerializedIndices.reserve(serializedIndicesSize + 4); m_SerializedIndices.resize(serializedIndicesSize + 4); const uint32_t rank32 = static_cast(rank); const uint64_t size64 = static_cast(serializedIndicesSize); - const uint64_t variablesIndexOffset = - static_cast(pgIndicesSize + 36); + const uint64_t variablesIndexOffset = static_cast(pgIndicesSize + 36); const uint64_t attributesIndexOffset = static_cast(pgIndicesSize + 36 + variablesIndicesSize); size_t position = 0; helper::CopyToBuffer(m_SerializedIndices, position, &rank32); helper::CopyToBuffer(m_SerializedIndices, position, &size64); - helper::CopyToBuffer(m_SerializedIndices, position, - &variablesIndexOffset); - helper::CopyToBuffer(m_SerializedIndices, position, - &attributesIndexOffset); - helper::CopyToBuffer(m_SerializedIndices, position, - &m_MetadataSet.DataPGCount); - - helper::CopyToBuffer(m_SerializedIndices, position, - m_MetadataSet.PGIndex.Buffer.data(), + helper::CopyToBuffer(m_SerializedIndices, position, &variablesIndexOffset); + helper::CopyToBuffer(m_SerializedIndices, position, &attributesIndexOffset); + helper::CopyToBuffer(m_SerializedIndices, position, &m_MetadataSet.DataPGCount); + + helper::CopyToBuffer(m_SerializedIndices, position, m_MetadataSet.PGIndex.Buffer.data(), m_MetadataSet.PGIndex.Buffer.size()); lf_SerializeIndices(m_MetadataSet.VarsIndices, position); lf_SerializeIndices(m_MetadataSet.AttributesIndices, position); }; auto lf_LocatePGIndices = - [&](std::unordered_map>> + [&](std::unordered_map>> &pgIndicesInfo, - const int rankSource, const std::vector &serialized, - const size_t position, const size_t endPosition) { + const int rankSource, const std::vector &serialized, const size_t position, + const size_t endPosition) { size_t stepStartPosition = position; size_t stepBuffersize = 0; size_t pgCountPerStep = 0; @@ -644,24 +606,19 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, { // record the pg info of previous step std::tuple stepPGIndexTuple = - std::make_tuple(pgCountPerStep, stepStartPosition, - stepBuffersize); + std::make_tuple(pgCountPerStep, stepStartPosition, stepBuffersize); auto search = pgIndicesInfo.find(currentStep); if (search == pgIndicesInfo.end()) { // the time step hasn't been added to the // unordered_map, add it pgIndicesInfo.emplace( - currentStep, - std::vector< - std::tuple>()); - pgIndicesInfo[currentStep].push_back( - stepPGIndexTuple); + currentStep, std::vector>()); + pgIndicesInfo[currentStep].push_back(stepPGIndexTuple); } else { - pgIndicesInfo[currentStep].push_back( - stepPGIndexTuple); + pgIndicesInfo[currentStep].push_back(stepPGIndexTuple); } stepStartPosition = localPosition; stepBuffersize = header.Length + 2; @@ -674,16 +631,14 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, { // record the pg info of the last step std::tuple stepPGIndexTuple = - std::make_tuple(pgCountPerStep, stepStartPosition, - stepBuffersize); + std::make_tuple(pgCountPerStep, stepStartPosition, stepBuffersize); auto search = pgIndicesInfo.find(currentStep); if (search == pgIndicesInfo.end()) { // the time step hasn't been added to the unordered_map, // add it - pgIndicesInfo.emplace( - currentStep, - std::vector>()); + pgIndicesInfo.emplace(currentStep, + std::vector>()); pgIndicesInfo[currentStep].push_back(stepPGIndexTuple); } else @@ -694,9 +649,8 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, } }; - auto lf_GetCharacteristics = [&](const std::vector &buffer, - size_t &position, const uint8_t dataType, - uint8_t &count, uint32_t &length, + auto lf_GetCharacteristics = [&](const std::vector &buffer, size_t &position, + const uint8_t dataType, uint8_t &count, uint32_t &length, uint32_t &timeStep) { @@ -706,26 +660,23 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, switch (dataTypeEnum) { -#define make_case(T) \ - case (TypeTraits::type_enum): { \ - size_t irrelevant; \ - const auto characteristics = ReadElementIndexCharacteristics( \ - buffer, position, TypeTraits::type_enum, irrelevant, true, \ - isLittleEndian); \ - count = characteristics.EntryCount; \ - length = characteristics.EntryLength; \ - timeStep = characteristics.Statistics.Step; \ - break; \ +#define make_case(T) \ + case (TypeTraits::type_enum): { \ + size_t irrelevant; \ + const auto characteristics = ReadElementIndexCharacteristics( \ + buffer, position, TypeTraits::type_enum, irrelevant, true, isLittleEndian); \ + count = characteristics.EntryCount; \ + length = characteristics.EntryLength; \ + timeStep = characteristics.Statistics.Step; \ + break; \ } ADIOS2_FOREACH_STDTYPE_1ARG(make_case) #undef make_case case (type_string_array): { size_t irrelevant; - const auto characteristics = - ReadElementIndexCharacteristics( - buffer, position, type_string_array, irrelevant, true, - isLittleEndian); + const auto characteristics = ReadElementIndexCharacteristics( + buffer, position, type_string_array, irrelevant, true, isLittleEndian); count = characteristics.EntryCount; length = characteristics.EntryLength; timeStep = characteristics.Statistics.Step; @@ -734,22 +685,18 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, default: helper::Throw( - "Toolkit", "format::bp::BP4Serializer", - "AggregateCollectiveMetadataIndices", - "type " + std::to_string(dataType) + - " not supported in BP4 Metadata Merge"); + "Toolkit", "format::bp::BP4Serializer", "AggregateCollectiveMetadataIndices", + "type " + std::to_string(dataType) + " not supported in BP4 Metadata Merge"); } // end switch }; auto lf_LocateVarIndices = [&](std::unordered_map< - size_t, - std::unordered_map>>> + size_t, std::unordered_map>>> &indicesInfo, - const int rankSource, const std::vector &serialized, - const size_t position, const size_t endPosition) + const int rankSource, const std::vector &serialized, const size_t position, + const size_t endPosition) { // uint32_t currentStep = 0; @@ -759,8 +706,8 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, { // std::cout << "var localPosition: " << localPosition << std::endl; size_t indexPosition = localPosition; - const ElementIndexHeader header = ReadElementIndexHeader( - serialized, indexPosition, helper::IsLittleEndian()); + const ElementIndexHeader header = + ReadElementIndexHeader(serialized, indexPosition, helper::IsLittleEndian()); // std::cout << "var indexPosition after ReadElementIndexHeader: " // << indexPosition << std::endl; @@ -769,8 +716,8 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, uint32_t length = 0; uint32_t timeStep = 0; - lf_GetCharacteristics(serialized, indexPosition, header.DataType, - count, length, timeStep); + lf_GetCharacteristics(serialized, indexPosition, header.DataType, count, length, + timeStep); size_t varIndexBufferSize = static_cast(header.Length) + 4; @@ -779,11 +726,9 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, { // the time step hasn't been added to the unordered_map, add it - std::unordered_map>> + std::unordered_map>> varIndexInfo; - varIndexInfo.emplace(header.Name, - std::vector>()); + varIndexInfo.emplace(header.Name, std::vector>()); std::tuple varIndexTuple = std::make_tuple(localPosition, varIndexBufferSize); varIndexInfo[header.Name].push_back(varIndexTuple); @@ -796,8 +741,8 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, if (varSearch == indicesInfo[timeStep].end()) { // found a new variable at this step - indicesInfo[timeStep].emplace( - header.Name, std::vector>()); + indicesInfo[timeStep].emplace(header.Name, + std::vector>()); std::tuple varIndexTuple = std::make_tuple(localPosition, varIndexBufferSize); indicesInfo[timeStep][header.Name].push_back(varIndexTuple); @@ -818,27 +763,25 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, auto lf_LocateAttrIndices = [&](std::unordered_map< - size_t, - std::unordered_map>>> + size_t, std::unordered_map>>> &indicesInfo, - const int rankSource, const std::vector &serialized, - const size_t position, const size_t endPosition) + const int rankSource, const std::vector &serialized, const size_t position, + const size_t endPosition) { size_t localPosition = position; while (localPosition < endPosition) { size_t indexPosition = localPosition; - const ElementIndexHeader header = ReadElementIndexHeader( - serialized, indexPosition, helper::IsLittleEndian()); + const ElementIndexHeader header = + ReadElementIndexHeader(serialized, indexPosition, helper::IsLittleEndian()); uint8_t count = 0; uint32_t length = 0; uint32_t timeStep = 0; - lf_GetCharacteristics(serialized, indexPosition, header.DataType, - count, length, timeStep); + lf_GetCharacteristics(serialized, indexPosition, header.DataType, count, length, + timeStep); size_t attrIndexBufferSize = static_cast(header.Length) + 4; @@ -852,11 +795,9 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, if (stepSearch == indicesInfo.end()) { // the time step hasn't been added to the unordered_map, add it - std::unordered_map>> + std::unordered_map>> attrIndexInfo; - attrIndexInfo.emplace( - header.Name, std::vector>()); + attrIndexInfo.emplace(header.Name, std::vector>()); std::tuple attrIndexTuple = std::make_tuple(localPosition, attrIndexBufferSize); attrIndexInfo[header.Name].push_back(attrIndexTuple); @@ -869,12 +810,11 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, if (attrSearch == indicesInfo[timeStep].end()) { // found a new attribute at this step - indicesInfo[timeStep].emplace( - header.Name, std::vector>()); + indicesInfo[timeStep].emplace(header.Name, + std::vector>()); std::tuple attrIndexTuple = std::make_tuple(localPosition, attrIndexBufferSize); - indicesInfo[timeStep][header.Name].push_back( - attrIndexTuple); + indicesInfo[timeStep][header.Name].push_back(attrIndexTuple); } else { @@ -882,8 +822,7 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, // this attribute for this rank std::tuple attrIndexTuple = std::make_tuple(localPosition, attrIndexBufferSize); - indicesInfo[timeStep][header.Name].push_back( - attrIndexTuple); + indicesInfo[timeStep][header.Name].push_back(attrIndexTuple); } } @@ -891,9 +830,8 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, } }; - auto lf_LocateAllIndices = - [&](const int rankSource, const std::vector headerInfo, - const std::vector &serialized, const size_t position) + auto lf_LocateAllIndices = [&](const int rankSource, const std::vector headerInfo, + const std::vector &serialized, const size_t position) { const size_t rankIndicesSize = headerInfo[0]; @@ -903,37 +841,31 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, size_t endPosition = variablesIndexOffset; // first deserialize pg indices - lf_LocatePGIndices(m_PGIndicesInfo, rankSource, serialized, - localPosition, endPosition); + lf_LocatePGIndices(m_PGIndicesInfo, rankSource, serialized, localPosition, endPosition); // deserialize variable indices localPosition = variablesIndexOffset; endPosition = attributesIndexOffset; - lf_LocateVarIndices(m_VariableIndicesInfo, rankSource, serialized, - localPosition, endPosition); + lf_LocateVarIndices(m_VariableIndicesInfo, rankSource, serialized, localPosition, + endPosition); // deserialize attributes indices localPosition = attributesIndexOffset; endPosition = rankIndicesSize + 4 + position; // attributes are constant and unique across ranks - lf_LocateAttrIndices(m_AttributesIndicesInfo, rankSource, serialized, - localPosition, endPosition); + lf_LocateAttrIndices(m_AttributesIndicesInfo, rankSource, serialized, localPosition, + endPosition); }; auto lf_SortMergeIndices = - [&](const std::unordered_map< - size_t, std::vector>> + [&](const std::unordered_map>> &pgIndicesInfo, const std::unordered_map< - size_t, - std::unordered_map>>> + size_t, std::unordered_map>>> &varIndicesInfo, const std::unordered_map< - size_t, - std::unordered_map>>> + size_t, std::unordered_map>>> &attrIndicesInfo, const std::vector &serialized) { auto &position = outBufferSTL.m_Position; @@ -953,8 +885,8 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, const uint64_t pgIndexStart = position; ptrs.push_back(pgIndexStart); - std::vector> - perStepPGIndicesInfo = pgIndicesInfo.at(t); + std::vector> perStepPGIndicesInfo = + pgIndicesInfo.at(t); size_t perStepPGCountPosition = position; position += 16; // skip the pgcount and pglength uint64_t perStepPGCountU64 = 0; @@ -963,18 +895,14 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, { size_t start = std::get<1>(item); size_t length = std::get<2>(item); - std::copy(serialized.begin() + start, - serialized.begin() + start + length, + std::copy(serialized.begin() + start, serialized.begin() + start + length, buffer.begin() + position); position += length; perStepPGCountU64 += std::get<0>(item); } - uint64_t perStepPGLengthU64 = - position - perStepPGCountPosition - 16; - helper::CopyToBuffer(buffer, perStepPGCountPosition, - &perStepPGCountU64); - helper::CopyToBuffer(buffer, perStepPGCountPosition, - &perStepPGLengthU64); + uint64_t perStepPGLengthU64 = position - perStepPGCountPosition - 16; + helper::CopyToBuffer(buffer, perStepPGCountPosition, &perStepPGCountU64); + helper::CopyToBuffer(buffer, perStepPGCountPosition, &perStepPGLengthU64); const uint64_t variablesIndexStart = position; ptrs.push_back(variablesIndexStart); @@ -985,15 +913,13 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, size_t perStepVarCountPosition = position; const uint32_t perStepVarCountU32 = static_cast(perStepVarIndicesInfo.size()); - helper::CopyToBuffer(buffer, perStepVarCountPosition, - &perStepVarCountU32); + helper::CopyToBuffer(buffer, perStepVarCountPosition, &perStepVarCountU32); position += 12; // skip for count and length for (auto const &pair : perStepVarIndicesInfo) { const size_t entryLengthPosition = position; - size_t headerStartPosition = - std::get<0>(pair.second[0]); + size_t headerStartPosition = std::get<0>(pair.second[0]); size_t localPosition = headerStartPosition; ElementIndexHeader header = ReadElementIndexHeader(serialized, localPosition); @@ -1011,33 +937,26 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, position += length - headerSize; setsCount += header.CharacteristicsSetsCount; } - const uint32_t entryLength = static_cast( - position - entryLengthPosition - 4); + const uint32_t entryLength = + static_cast(position - entryLengthPosition - 4); size_t backPosition = entryLengthPosition; + helper::CopyToBuffer(buffer, backPosition, &entryLength); helper::CopyToBuffer(buffer, backPosition, - &entryLength); - helper::CopyToBuffer( - buffer, backPosition, - &serialized[headerStartPosition + 4], - headerSize - 8 - 4); + &serialized[headerStartPosition + 4], + headerSize - 8 - 4); helper::CopyToBuffer(buffer, backPosition, &setsCount); } - const uint64_t perStepVarLengthU64 = static_cast( - position - perStepVarCountPosition - 8); - helper::CopyToBuffer(buffer, perStepVarCountPosition, - &perStepVarLengthU64); + const uint64_t perStepVarLengthU64 = + static_cast(position - perStepVarCountPosition - 8); + helper::CopyToBuffer(buffer, perStepVarCountPosition, &perStepVarLengthU64); } else { size_t perStepVarCountPosition = position; - const uint32_t perStepVarCountU32 = - static_cast(0); - helper::CopyToBuffer(buffer, perStepVarCountPosition, - &perStepVarCountU32); - const uint64_t perStepVarLengthU64 = - static_cast(0); - helper::CopyToBuffer(buffer, perStepVarCountPosition, - &perStepVarLengthU64); + const uint32_t perStepVarCountU32 = static_cast(0); + helper::CopyToBuffer(buffer, perStepVarCountPosition, &perStepVarCountU32); + const uint64_t perStepVarLengthU64 = static_cast(0); + helper::CopyToBuffer(buffer, perStepVarCountPosition, &perStepVarLengthU64); position += 12; // skip for count and length } @@ -1051,8 +970,7 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, size_t perStepAttrCountPosition = position; const uint32_t perStepAttrCountU32 = static_cast(perStepAttrIndicesInfo.size()); - helper::CopyToBuffer(buffer, perStepAttrCountPosition, - &perStepAttrCountU32); + helper::CopyToBuffer(buffer, perStepAttrCountPosition, &perStepAttrCountU32); position += 12; // skip for length for (auto const &pair : perStepAttrIndicesInfo) @@ -1067,22 +985,17 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, position += length; } } - const uint64_t perStepAttrLengthU64 = static_cast( - position - perStepAttrCountPosition - 8); - helper::CopyToBuffer(buffer, perStepAttrCountPosition, - &perStepAttrLengthU64); + const uint64_t perStepAttrLengthU64 = + static_cast(position - perStepAttrCountPosition - 8); + helper::CopyToBuffer(buffer, perStepAttrCountPosition, &perStepAttrLengthU64); } else { size_t perStepAttrCountPosition = position; - const uint32_t perStepAttrCountU32 = - static_cast(0); - helper::CopyToBuffer(buffer, perStepAttrCountPosition, - &perStepAttrCountU32); - const uint64_t perStepAttrLengthU64 = - static_cast(0); - helper::CopyToBuffer(buffer, perStepAttrCountPosition, - &perStepAttrLengthU64); + const uint32_t perStepAttrCountU32 = static_cast(0); + helper::CopyToBuffer(buffer, perStepAttrCountPosition, &perStepAttrCountU32); + const uint64_t perStepAttrLengthU64 = static_cast(0); + helper::CopyToBuffer(buffer, perStepAttrCountPosition, &perStepAttrLengthU64); position += 12; // skip for count and length } @@ -1095,8 +1008,7 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, // BODY of function starts here lf_SerializeAllIndices(comm, rank); // Set m_SerializedIndices - comm.GathervVectors(m_SerializedIndices, inBufferSTL.m_Buffer, - inBufferSTL.m_Position, 0); + comm.GathervVectors(m_SerializedIndices, inBufferSTL.m_Buffer, inBufferSTL.m_Position, 0); // deserialize, it's all local inside rank 0 if (rank == 0) @@ -1111,17 +1023,16 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, { size_t localPosition = serializedPosition; - const int rankSource = static_cast(helper::ReadValue( - serialized, localPosition, isLittleEndian)); + const int rankSource = static_cast( + helper::ReadValue(serialized, localPosition, isLittleEndian)); for (auto i = 0; i < 4; ++i) { - headerInfo[i] = static_cast(helper::ReadValue( - serialized, localPosition, isLittleEndian)); + headerInfo[i] = static_cast( + helper::ReadValue(serialized, localPosition, isLittleEndian)); } - lf_LocateAllIndices(rankSource, headerInfo, serialized, - serializedPosition); + lf_LocateAllIndices(rankSource, headerInfo, serialized, serializedPosition); serializedPosition += headerInfo[0] + 4; } } @@ -1135,20 +1046,18 @@ void BP4Serializer::AggregateCollectiveMetadataIndices(helper::Comm const &comm, size_t totalStep = m_PGIndicesInfo.size(); size_t perStepExtraSize = 16 + 12 + 12; const size_t totalExtraSize = totalStep * perStepExtraSize; - buffer.reserve(outBufferSTL.m_Position + inBufferSTL.m_Position + - totalExtraSize); - buffer.resize(outBufferSTL.m_Position + inBufferSTL.m_Position + - totalExtraSize); - lf_SortMergeIndices(m_PGIndicesInfo, m_VariableIndicesInfo, - m_AttributesIndicesInfo, serialized); + buffer.reserve(outBufferSTL.m_Position + inBufferSTL.m_Position + totalExtraSize); + buffer.resize(outBufferSTL.m_Position + inBufferSTL.m_Position + totalExtraSize); + lf_SortMergeIndices(m_PGIndicesInfo, m_VariableIndicesInfo, m_AttributesIndicesInfo, + serialized); } } -#define declare_template_instantiation(T) \ - void BP4Serializer::DoPutAttributeInData( \ - const core::Attribute &attribute, Stats &stats) noexcept \ - { \ - PutAttributeInDataCommon(attribute, stats); \ +#define declare_template_instantiation(T) \ + void BP4Serializer::DoPutAttributeInData(const core::Attribute &attribute, \ + Stats &stats) noexcept \ + { \ + PutAttributeInDataCommon(attribute, stats); \ } ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -1156,23 +1065,23 @@ ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_template_instantiation) //------------------------------------------------------------------------------ // Explicit instantiation of only public templates -#define declare_template_instantiation(T) \ - template void BP4Serializer::PutVariablePayload( \ - const core::Variable &, const typename core::Variable::BPInfo &, \ - const bool, typename core::Variable::Span *) noexcept; \ - \ - template void BP4Serializer::PutVariableMetadata( \ - const core::Variable &, const typename core::Variable::BPInfo &, \ - const bool, typename core::Variable::Span *) noexcept; +#define declare_template_instantiation(T) \ + template void BP4Serializer::PutVariablePayload( \ + const core::Variable &, const typename core::Variable::BPInfo &, const bool, \ + typename core::Variable::Span *) noexcept; \ + \ + template void BP4Serializer::PutVariableMetadata( \ + const core::Variable &, const typename core::Variable::BPInfo &, const bool, \ + typename core::Variable::Span *) noexcept; ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation //------------------------------------------------------------------------------ -#define declare_template_instantiation(T) \ - template void BP4Serializer::PutSpanMetadata( \ - const core::Variable &, const typename core::Variable::BPInfo &, \ +#define declare_template_instantiation(T) \ + template void BP4Serializer::PutSpanMetadata( \ + const core::Variable &, const typename core::Variable::BPInfo &, \ const typename core::Variable::Span &) noexcept; ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_template_instantiation) diff --git a/source/adios2/toolkit/format/bp/bp4/BP4Serializer.h b/source/adios2/toolkit/format/bp/bp4/BP4Serializer.h index 3de0c24ca4..4bcfb10441 100644 --- a/source/adios2/toolkit/format/bp/bp4/BP4Serializer.h +++ b/source/adios2/toolkit/format/bp/bp4/BP4Serializer.h @@ -47,8 +47,7 @@ class BP4Serializer : public BP4Base, public BPSerializer * @param fileType a small string up to 8 characters that is * concatenated to the version string */ - void MakeHeader(BufferSTL &b, const std::string fileType, - const bool isActive); + void MakeHeader(BufferSTL &b, const std::string fileType, const bool isActive); /** * Writes a process group index PGIndex and list of methods (from @@ -57,31 +56,28 @@ class BP4Serializer : public BP4Base, public BPSerializer * @param hostLanguage from ADIOS class passed to IO * @param transportsTypes passed to get list of transport "bp methods" */ - void PutProcessGroupIndex( - const std::string &ioName, const std::string hostLanguage, - const std::vector &transportsTypes) noexcept; + void PutProcessGroupIndex(const std::string &ioName, const std::string hostLanguage, + const std::vector &transportsTypes) noexcept; /** * Put in buffer metadata for a given variable * @param variable */ template - void PutVariableMetadata( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const bool sourceRowMajor = true, - typename core::Variable::Span *span = nullptr) noexcept; + void PutVariableMetadata(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const bool sourceRowMajor = true, + typename core::Variable::Span *span = nullptr) noexcept; /** * Put in buffer variable payload. Expensive part. * @param variable payload input from m_PutValues */ template - void PutVariablePayload( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const bool sourceRowMajor = true, - typename core::Variable::Span *span = nullptr) noexcept; + void PutVariablePayload(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const bool sourceRowMajor = true, + typename core::Variable::Span *span = nullptr) noexcept; template void PutSpanMetadata(const core::Variable &variable, @@ -132,8 +128,7 @@ class BP4Serializer : public BP4Base, public BPSerializer * @param inMetadataBuffer collective metadata from absolute rank = 0, else * from aggregators */ - void AggregateCollectiveMetadata(helper::Comm const &comm, - BufferSTL &bufferSTL, + void AggregateCollectiveMetadata(helper::Comm const &comm, BufferSTL &bufferSTL, const bool inMetadataBuffer); private: @@ -141,17 +136,14 @@ class BP4Serializer : public BP4Base, public BPSerializer std::vector m_GatheredSerializedIndices; /** aggregate pg rank indices */ - std::unordered_map>> - m_PGIndicesInfo; + std::unordered_map>> m_PGIndicesInfo; /** deserialized variable indices per rank (vector index) */ - std::unordered_map< - size_t, std::unordered_map>>> + std::unordered_map>>> m_VariableIndicesInfo; /** deserialized attribute indices per rank (vector index) */ - std::unordered_map< - size_t, std::unordered_map>>> + std::unordered_map>>> m_AttributesIndicesInfo; /** @@ -163,9 +155,8 @@ class BP4Serializer : public BP4Base, public BPSerializer * @return attribute length position */ template - size_t PutAttributeHeaderInData(const core::Attribute &attribute, - Stats &stats, const char *headerID, - const size_t headerIDLength) noexcept; + size_t PutAttributeHeaderInData(const core::Attribute &attribute, Stats &stats, + const char *headerID, const size_t headerIDLength) noexcept; /** * Called from WriteAttributeInData specialized functions @@ -174,20 +165,16 @@ class BP4Serializer : public BP4Base, public BPSerializer * @param attributeLengthPosition */ template - void - PutAttributeLengthInData(const core::Attribute &attribute, - Stats &stats, - const size_t attributeLengthPosition) noexcept; - -#define declare_template_instantiation(T) \ - void DoPutAttributeInData(const core::Attribute &attribute, \ - Stats &stats) noexcept final; + void PutAttributeLengthInData(const core::Attribute &attribute, Stats &stats, + const size_t attributeLengthPosition) noexcept; + +#define declare_template_instantiation(T) \ + void DoPutAttributeInData(const core::Attribute &attribute, Stats &stats) noexcept final; ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation template - void PutAttributeInDataCommon(const core::Attribute &attribute, - Stats &stats) noexcept; + void PutAttributeInDataCommon(const core::Attribute &attribute, Stats &stats) noexcept; /** * Get variable statistics @@ -196,8 +183,7 @@ class BP4Serializer : public BP4Base, public BPSerializer * @return stats BP4 Stats */ template - Stats GetBPStats(const bool singleValue, - const typename core::Variable::BPInfo &blockInfo, + Stats GetBPStats(const bool singleValue, const typename core::Variable::BPInfo &blockInfo, const bool isRowMajor) noexcept; /** @return The position that holds the length of the variable entry @@ -205,44 +191,40 @@ class BP4Serializer : public BP4Base, public BPSerializer * PutVariablePayload() */ template - size_t PutVariableMetadataInData( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const Stats &stats, - const typename core::Variable::Span *span) noexcept; + size_t PutVariableMetadataInData(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, + const typename core::Variable::Span *span) noexcept; template - void PutVariableMetadataInIndex( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const Stats &stats, const bool isNew, SerialElementIndex &index, - typename core::Variable::Span *span) noexcept; + void PutVariableMetadataInIndex(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, const bool isNew, + SerialElementIndex &index, + typename core::Variable::Span *span) noexcept; template - void PutVariableCharacteristics( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const Stats &stats, std::vector &buffer, - typename core::Variable::Span *span) noexcept; + void PutVariableCharacteristics(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, std::vector &buffer, + typename core::Variable::Span *span) noexcept; template - void PutVariableCharacteristicsInData( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const Stats &stats, std::vector &buffer, - size_t &position) noexcept; + void PutVariableCharacteristicsInData(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, std::vector &buffer, + size_t &position) noexcept; /** Writes min max */ template void PutBoundsRecord(const bool singleValue, const Stats &stats, - uint8_t &characteristicsCounter, - std::vector &buffer) noexcept; + uint8_t &characteristicsCounter, std::vector &buffer) noexcept; /** Overloaded version for data buffer */ template void PutBoundsRecord(const bool singleValue, const Stats &stats, - uint8_t &characteristicsCounter, - std::vector &buffer, size_t &position) noexcept; + uint8_t &characteristicsCounter, std::vector &buffer, + size_t &position) noexcept; /** * Wraps up the data buffer serialization in m_HeapBuffer and fills the pg @@ -252,8 +234,7 @@ class BP4Serializer : public BP4Base, public BPSerializer */ void SerializeDataBuffer(core::IO &io) noexcept final; - void AggregateCollectiveMetadataIndices(helper::Comm const &comm, - BufferSTL &bufferSTL); + void AggregateCollectiveMetadataIndices(helper::Comm const &comm, BufferSTL &bufferSTL); }; } // end namespace format diff --git a/source/adios2/toolkit/format/bp/bp4/BP4Serializer.tcc b/source/adios2/toolkit/format/bp/bp4/BP4Serializer.tcc index 07af6e8a5f..71548cc22d 100644 --- a/source/adios2/toolkit/format/bp/bp4/BP4Serializer.tcc +++ b/source/adios2/toolkit/format/bp/bp4/BP4Serializer.tcc @@ -31,40 +31,35 @@ namespace format { template -inline void BP4Serializer::PutVariableMetadata( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const bool sourceRowMajor, typename core::Variable::Span *span) noexcept +inline void BP4Serializer::PutVariableMetadata(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const bool sourceRowMajor, + typename core::Variable::Span *span) noexcept { auto lf_SetOffset = [&](uint64_t &offset) { if (m_Aggregator.m_IsActive && !m_Aggregator.m_IsAggregator) { - offset = - static_cast(m_Data.m_Position + m_PreDataFileLength); + offset = static_cast(m_Data.m_Position + m_PreDataFileLength); } else { - offset = static_cast(m_Data.m_AbsolutePosition + - m_PreDataFileLength); + offset = static_cast(m_Data.m_AbsolutePosition + m_PreDataFileLength); } }; m_Profiler.Start("buffering"); - Stats stats = - GetBPStats(variable.m_SingleValue, blockInfo, sourceRowMajor); + Stats stats = GetBPStats(variable.m_SingleValue, blockInfo, sourceRowMajor); // Get new Index or point to existing index bool isNew = true; // flag to check if variable is new - SerialElementIndex &variableIndex = GetSerialElementIndex( - variable.m_Name, m_MetadataSet.VarsIndices, isNew); - variableIndex.Valid = - true; // flag to indicate this variable is put at current step + SerialElementIndex &variableIndex = + GetSerialElementIndex(variable.m_Name, m_MetadataSet.VarsIndices, isNew); + variableIndex.Valid = true; // flag to indicate this variable is put at current step stats.MemberID = variableIndex.MemberID; lf_SetOffset(stats.Offset); - m_LastVarLengthPosInBuffer = - PutVariableMetadataInData(variable, blockInfo, stats, span); + m_LastVarLengthPosInBuffer = PutVariableMetadataInData(variable, blockInfo, stats, span); lf_SetOffset(stats.PayloadOffset); if (span != nullptr) { @@ -72,18 +67,17 @@ inline void BP4Serializer::PutVariableMetadata( } // write to metadata index - PutVariableMetadataInIndex(variable, blockInfo, stats, isNew, variableIndex, - span); + PutVariableMetadataInIndex(variable, blockInfo, stats, isNew, variableIndex, span); ++m_MetadataSet.DataPGVarsCount; m_Profiler.Stop("buffering"); } template -inline void BP4Serializer::PutVariablePayload( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const bool sourceRowMajor, typename core::Variable::Span *span) noexcept +inline void BP4Serializer::PutVariablePayload(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const bool sourceRowMajor, + typename core::Variable::Span *span) noexcept { m_Profiler.Start("buffering"); if (span != nullptr) @@ -91,8 +85,7 @@ inline void BP4Serializer::PutVariablePayload( const size_t blockSize = helper::GetTotalSize(blockInfo.Count); if (span->m_Value != T{}) { - T *itBegin = reinterpret_cast(m_Data.m_Buffer.data() + - m_Data.m_Position); + T *itBegin = reinterpret_cast(m_Data.m_Buffer.data() + m_Data.m_Position); // TODO: does std::fill_n have a bug in gcc or due to optimizations // this is impossible due to memory alignment? This seg faults in @@ -118,9 +111,8 @@ inline void BP4Serializer::PutVariablePayload( } else { - const bool isZeroCount = - std::all_of(blockInfo.Count.begin(), blockInfo.Count.end(), - [](const size_t i) { return i == 0; }); + const bool isZeroCount = std::all_of(blockInfo.Count.begin(), blockInfo.Count.end(), + [](const size_t i) { return i == 0; }); if (!isZeroCount) { PutOperationPayloadInBuffer(variable, blockInfo); @@ -139,10 +131,9 @@ inline void BP4Serializer::PutVariablePayload( } template -void BP4Serializer::PutSpanMetadata( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const typename core::Variable::Span &span) noexcept +void BP4Serializer::PutSpanMetadata(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const typename core::Variable::Span &span) noexcept { if (m_Parameters.StatsLevel > 0) { @@ -151,18 +142,15 @@ void BP4Serializer::PutSpanMetadata( Stats stats; stats.Min = {}; stats.Max = {}; - stats.SubBlockInfo = - helper::DivideBlock(blockInfo.Count, m_Parameters.StatsBlockSize, - helper::BlockDivisionMethod::Contiguous); + stats.SubBlockInfo = helper::DivideBlock(blockInfo.Count, m_Parameters.StatsBlockSize, + helper::BlockDivisionMethod::Contiguous); // set stats MinMaxs with the correct size - helper::GetMinMaxSubblocks( - span.Data(), blockInfo.Count, stats.SubBlockInfo, stats.MinMaxs, - stats.Min, stats.Max, m_Parameters.Threads, blockInfo.MemSpace); + helper::GetMinMaxSubblocks(span.Data(), blockInfo.Count, stats.SubBlockInfo, stats.MinMaxs, + stats.Min, stats.Max, m_Parameters.Threads, blockInfo.MemSpace); m_Profiler.Stop("minmax"); // Put min/max blocks in variable index - SerialElementIndex &variableIndex = - m_MetadataSet.VarsIndices.at(variable.m_Name); + SerialElementIndex &variableIndex = m_MetadataSet.VarsIndices.at(variable.m_Name); auto &buffer = variableIndex.Buffer; size_t minMaxPosition = span.m_MinMaxMetadataPositions.first; @@ -174,10 +162,9 @@ void BP4Serializer::PutSpanMetadata( // PRIVATE template -size_t -BP4Serializer::PutAttributeHeaderInData(const core::Attribute &attribute, - Stats &stats, const char *headerID, - const size_t headerIDLength) noexcept +size_t BP4Serializer::PutAttributeHeaderInData(const core::Attribute &attribute, Stats &stats, + const char *headerID, + const size_t headerIDLength) noexcept { auto &buffer = m_Data.m_Buffer; auto &position = m_Data.m_Position; @@ -200,9 +187,8 @@ BP4Serializer::PutAttributeHeaderInData(const core::Attribute &attribute, } template -void BP4Serializer::PutAttributeLengthInData( - const core::Attribute &attribute, Stats &stats, - const size_t attributeLengthPosition) noexcept +void BP4Serializer::PutAttributeLengthInData(const core::Attribute &attribute, Stats &stats, + const size_t attributeLengthPosition) noexcept { auto &buffer = m_Data.m_Buffer; auto &position = m_Data.m_Position; @@ -214,9 +200,8 @@ void BP4Serializer::PutAttributeLengthInData( } template <> -inline void BP4Serializer::PutAttributeInDataCommon( - const core::Attribute &attribute, - Stats &stats) noexcept +inline void BP4Serializer::PutAttributeInDataCommon(const core::Attribute &attribute, + Stats &stats) noexcept { auto &buffer = m_Data.m_Buffer; auto &position = m_Data.m_Position; @@ -237,16 +222,13 @@ inline void BP4Serializer::PutAttributeInDataCommon( helper::CopyToBuffer(buffer, position, &dataType); // here record payload offset - stats.PayloadOffset = - absolutePosition + position - mdBeginPosition + m_PreDataFileLength; + stats.PayloadOffset = absolutePosition + position - mdBeginPosition + m_PreDataFileLength; if (dataType == type_string) { - const uint32_t dataSize = - static_cast(attribute.m_DataSingleValue.size()); + const uint32_t dataSize = static_cast(attribute.m_DataSingleValue.size()); helper::CopyToBuffer(buffer, position, &dataSize); - helper::CopyToBuffer(buffer, position, - attribute.m_DataSingleValue.data(), + helper::CopyToBuffer(buffer, position, attribute.m_DataSingleValue.data(), attribute.m_DataSingleValue.size()); } else if (dataType == type_string_array) @@ -262,8 +244,7 @@ inline void BP4Serializer::PutAttributeInDataCommon( const uint32_t elementSize = static_cast(element.size()); helper::CopyToBuffer(buffer, position, &elementSize); - helper::CopyToBuffer(buffer, position, element.data(), - element.size()); + helper::CopyToBuffer(buffer, position, element.data(), element.size()); } } @@ -276,8 +257,8 @@ inline void BP4Serializer::PutAttributeInDataCommon( } template -void BP4Serializer::PutAttributeInDataCommon( - const core::Attribute &attribute, Stats &stats) noexcept +void BP4Serializer::PutAttributeInDataCommon(const core::Attribute &attribute, + Stats &stats) noexcept { auto &buffer = m_Data.m_Buffer; auto &position = m_Data.m_Position; @@ -294,11 +275,9 @@ void BP4Serializer::PutAttributeInDataCommon( helper::CopyToBuffer(buffer, position, &dataType); // here record payload offset - stats.PayloadOffset = - absolutePosition + position - mdBeginPosition + m_PreDataFileLength; + stats.PayloadOffset = absolutePosition + position - mdBeginPosition + m_PreDataFileLength; - const uint32_t dataSize = - static_cast(attribute.m_Elements * sizeof(T)); + const uint32_t dataSize = static_cast(attribute.m_Elements * sizeof(T)); helper::CopyToBuffer(buffer, position, &dataSize); if (attribute.m_IsSingleValue) // single value @@ -307,8 +286,7 @@ void BP4Serializer::PutAttributeInDataCommon( } else // array { - helper::CopyToBuffer(buffer, position, attribute.m_DataArray.data(), - attribute.m_Elements); + helper::CopyToBuffer(buffer, position, attribute.m_DataArray.data(), attribute.m_Elements); } // write a block identifier AMD] @@ -320,10 +298,10 @@ void BP4Serializer::PutAttributeInDataCommon( } template <> -inline BP4Serializer::Stats BP4Serializer::GetBPStats( - const bool /*singleValue*/, - const typename core::Variable::BPInfo & /*blockInfo*/, - const bool /*isRowMajor*/) noexcept +inline BP4Serializer::Stats +BP4Serializer::GetBPStats(const bool /*singleValue*/, + const typename core::Variable::BPInfo & /*blockInfo*/, + const bool /*isRowMajor*/) noexcept { Stats stats; stats.Step = m_MetadataSet.TimeStep; @@ -346,13 +324,12 @@ BP4Serializer::GetBPStats(const bool singleValue, { stats.Min = {}; stats.Max = {}; - stats.SubBlockInfo = - helper::DivideBlock(blockInfo.Count, m_Parameters.StatsBlockSize, - helper::BlockDivisionMethod::Contiguous); + stats.SubBlockInfo = helper::DivideBlock(blockInfo.Count, m_Parameters.StatsBlockSize, + helper::BlockDivisionMethod::Contiguous); // set stats MinMaxs with the correct size - helper::GetMinMaxSubblocks( - blockInfo.Data, blockInfo.Count, stats.SubBlockInfo, stats.MinMaxs, - stats.Min, stats.Max, m_Parameters.Threads, blockInfo.MemSpace); + helper::GetMinMaxSubblocks(blockInfo.Data, blockInfo.Count, stats.SubBlockInfo, + stats.MinMaxs, stats.Min, stats.Max, m_Parameters.Threads, + blockInfo.MemSpace); return stats; } @@ -369,20 +346,17 @@ BP4Serializer::GetBPStats(const bool singleValue, m_Profiler.Start("minmax"); if (blockInfo.MemoryStart.empty()) { - stats.SubBlockInfo = helper::DivideBlock( - blockInfo.Count, m_Parameters.StatsBlockSize, - helper::BlockDivisionMethod::Contiguous); - helper::GetMinMaxSubblocks( - blockInfo.Data, blockInfo.Count, stats.SubBlockInfo, - stats.MinMaxs, stats.Min, stats.Max, m_Parameters.Threads, - blockInfo.MemSpace); + stats.SubBlockInfo = helper::DivideBlock(blockInfo.Count, m_Parameters.StatsBlockSize, + helper::BlockDivisionMethod::Contiguous); + helper::GetMinMaxSubblocks(blockInfo.Data, blockInfo.Count, stats.SubBlockInfo, + stats.MinMaxs, stats.Min, stats.Max, m_Parameters.Threads, + blockInfo.MemSpace); } else { // non-contiguous memory min/max - helper::GetMinMaxSelection(blockInfo.Data, blockInfo.MemoryCount, - blockInfo.MemoryStart, blockInfo.Count, - isRowMajor, stats.Min, stats.Max, + helper::GetMinMaxSelection(blockInfo.Data, blockInfo.MemoryCount, blockInfo.MemoryStart, + blockInfo.Count, isRowMajor, stats.Min, stats.Max, blockInfo.MemSpace); } m_Profiler.Stop("minmax"); @@ -393,9 +367,8 @@ BP4Serializer::GetBPStats(const bool singleValue, template size_t BP4Serializer::PutVariableMetadataInData( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, const Stats &stats, - const typename core::Variable::Span *span) noexcept + const core::Variable &variable, const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, const typename core::Variable::Span *span) noexcept { auto &buffer = m_Data.m_Buffer; auto &position = m_Data.m_Position; @@ -438,12 +411,10 @@ size_t BP4Serializer::PutVariableMetadataInData( uint16_t dimensionsLength = 27 * dimensions; helper::CopyToBuffer(buffer, position, &dimensionsLength); // length - PutDimensionsRecord(variable.m_Count, variable.m_Shape, variable.m_Start, - buffer, position); + PutDimensionsRecord(variable.m_Count, variable.m_Shape, variable.m_Start, buffer, position); // CHARACTERISTICS - PutVariableCharacteristicsInData(variable, blockInfo, stats, buffer, - position); + PutVariableCharacteristicsInData(variable, blockInfo, stats, buffer, position); // here align pointer for span const size_t padLengthPosition = position; @@ -452,8 +423,7 @@ size_t BP4Serializer::PutVariableMetadataInData( helper::CopyToBuffer(buffer, position, zeros.data(), 5); // here check for the next aligned pointer const size_t extraBytes = span == nullptr ? 0 : m_Data.Align(); - const std::string pad = - span == nullptr ? "VMD]" : std::string(extraBytes, '\0') + "VMD]"; + const std::string pad = span == nullptr ? "VMD]" : std::string(extraBytes, '\0') + "VMD]"; size_t backPosition = padLengthPosition; const uint8_t padLength = static_cast(pad.size()); @@ -469,8 +439,7 @@ size_t BP4Serializer::PutVariableMetadataInData( template <> inline size_t BP4Serializer::PutVariableMetadataInData( const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, - const Stats &stats, + const typename core::Variable::BPInfo &blockInfo, const Stats &stats, const typename core::Variable::Span * /*span*/) noexcept { auto &buffer = m_Data.m_Buffer; @@ -512,8 +481,7 @@ inline size_t BP4Serializer::PutVariableMetadataInData( uint16_t dimensionsLength = 27 * dimensions; helper::CopyToBuffer(buffer, position, &dimensionsLength); // length - PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, - buffer, position); + PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, buffer, position); position += 5; // skipping characteristics @@ -527,16 +495,15 @@ inline size_t BP4Serializer::PutVariableMetadataInData( } template -void BP4Serializer::PutVariableMetadataInIndex( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, const Stats &stats, - const bool isNew, SerialElementIndex &index, - typename core::Variable::Span *span) noexcept +void BP4Serializer::PutVariableMetadataInIndex(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, const bool isNew, + SerialElementIndex &index, + typename core::Variable::Span *span) noexcept { auto &buffer = index.Buffer; - if (index.CurrentStep != - stats.Step) // create a new variable header for a new step + if (index.CurrentStep != stats.Step) // create a new variable header for a new step { size_t indexLengthPosition = buffer.size(); index.CurrentHeaderPosition = buffer.size(); @@ -565,8 +532,7 @@ void BP4Serializer::PutVariableMetadataInIndex( index.LastUpdatedPosition = buffer.size(); PutVariableCharacteristics(variable, blockInfo, stats, buffer, span); - const uint32_t indexLength = - static_cast(buffer.size() - indexLengthPosition - 4); + const uint32_t indexLength = static_cast(buffer.size() - indexLengthPosition - 4); helper::CopyToBuffer(buffer, indexLengthPosition, &indexLength); @@ -580,33 +546,29 @@ void BP4Serializer::PutVariableMetadataInIndex( static_cast(buffer.size() - currentIndexStartPosition); size_t localPosition = index.CurrentHeaderPosition; - uint32_t preIndexLength = helper::ReadValue( - buffer, localPosition, helper::IsLittleEndian()); + uint32_t preIndexLength = + helper::ReadValue(buffer, localPosition, helper::IsLittleEndian()); uint32_t newIndexLength = preIndexLength + currentIndexLength; - localPosition = - index.CurrentHeaderPosition; // back to beginning of the header + localPosition = index.CurrentHeaderPosition; // back to beginning of the header helper::CopyToBuffer(buffer, localPosition, &newIndexLength); ++index.Count; // fixed since group and path are not printed - size_t setsCountPosition = - index.CurrentHeaderPosition + 15 + variable.m_Name.size(); + size_t setsCountPosition = index.CurrentHeaderPosition + 15 + variable.m_Name.size(); helper::CopyToBuffer(buffer, setsCountPosition, &index.Count); } } template -void BP4Serializer::PutBoundsRecord(const bool singleValue, - const Stats &stats, +void BP4Serializer::PutBoundsRecord(const bool singleValue, const Stats &stats, uint8_t &characteristicsCounter, std::vector &buffer) noexcept { if (singleValue) { - PutCharacteristicRecord(characteristic_value, characteristicsCounter, - stats.Min, buffer); + PutCharacteristicRecord(characteristic_value, characteristicsCounter, stats.Min, buffer); } else { @@ -626,11 +588,9 @@ void BP4Serializer::PutBoundsRecord(const bool singleValue, if (M > 1) { - uint8_t method = - static_cast(stats.SubBlockInfo.DivisionMethod); + uint8_t method = static_cast(stats.SubBlockInfo.DivisionMethod); helper::InsertToBuffer(buffer, &method); - uint64_t subBlockSize = - static_cast(stats.SubBlockInfo.SubBlockSize); + uint64_t subBlockSize = static_cast(stats.SubBlockInfo.SubBlockSize); helper::InsertToBuffer(buffer, &subBlockSize); for (auto const d : stats.SubBlockInfo.Div) @@ -649,16 +609,14 @@ void BP4Serializer::PutBoundsRecord(const bool singleValue, } template -void BP4Serializer::PutBoundsRecord(const bool singleValue, - const Stats &stats, - uint8_t &characteristicsCounter, - std::vector &buffer, +void BP4Serializer::PutBoundsRecord(const bool singleValue, const Stats &stats, + uint8_t &characteristicsCounter, std::vector &buffer, size_t &position) noexcept { if (singleValue) { - PutCharacteristicRecord(characteristic_value, characteristicsCounter, - stats.Min, buffer, position); + PutCharacteristicRecord(characteristic_value, characteristicsCounter, stats.Min, buffer, + position); } else { @@ -678,11 +636,9 @@ void BP4Serializer::PutBoundsRecord(const bool singleValue, if (M > 1) { - uint8_t method = - static_cast(stats.SubBlockInfo.DivisionMethod); + uint8_t method = static_cast(stats.SubBlockInfo.DivisionMethod); helper::CopyToBuffer(buffer, position, &method); - uint64_t subBlockSize = - static_cast(stats.SubBlockInfo.SubBlockSize); + uint64_t subBlockSize = static_cast(stats.SubBlockInfo.SubBlockSize); helper::CopyToBuffer(buffer, position, &subBlockSize); for (auto const d : stats.SubBlockInfo.Div) @@ -703,20 +659,18 @@ void BP4Serializer::PutBoundsRecord(const bool singleValue, template <> inline void BP4Serializer::PutVariableCharacteristics( const core::Variable &variable, - const core::Variable::BPInfo &blockInfo, - const Stats &stats, std::vector &buffer, - typename core::Variable::Span * /*span*/) noexcept + const core::Variable::BPInfo &blockInfo, const Stats &stats, + std::vector &buffer, typename core::Variable::Span * /*span*/) noexcept { const size_t characteristicsCountPosition = buffer.size(); // skip characteristics count(1) + length (4) buffer.insert(buffer.end(), 5, '\0'); uint8_t characteristicsCounter = 0; - PutCharacteristicRecord(characteristic_time_index, characteristicsCounter, - stats.Step, buffer); + PutCharacteristicRecord(characteristic_time_index, characteristicsCounter, stats.Step, buffer); - PutCharacteristicRecord(characteristic_file_index, characteristicsCounter, - stats.FileIndex, buffer); + PutCharacteristicRecord(characteristic_file_index, characteristicsCounter, stats.FileIndex, + buffer); uint8_t characteristicID = characteristic_value; helper::InsertToBuffer(buffer, &characteristicID); @@ -729,16 +683,13 @@ inline void BP4Serializer::PutVariableCharacteristics( helper::InsertToBuffer(buffer, &dimensions); // count const uint16_t dimensionsLength = static_cast(24 * dimensions); helper::InsertToBuffer(buffer, &dimensionsLength); // length - PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, - buffer); + PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, buffer); ++characteristicsCounter; - PutCharacteristicRecord(characteristic_offset, characteristicsCounter, - stats.Offset, buffer); + PutCharacteristicRecord(characteristic_offset, characteristicsCounter, stats.Offset, buffer); - PutCharacteristicRecord(characteristic_payload_offset, - characteristicsCounter, stats.PayloadOffset, - buffer); + PutCharacteristicRecord(characteristic_payload_offset, characteristicsCounter, + stats.PayloadOffset, buffer); // END OF CHARACTERISTICS @@ -748,18 +699,18 @@ inline void BP4Serializer::PutVariableCharacteristics( &characteristicsCounter); // count (1) // remove its own length (4) + characteristic counter (1) - const uint32_t characteristicsLength = static_cast( - buffer.size() - characteristicsCountPosition - 4 - 1); + const uint32_t characteristicsLength = + static_cast(buffer.size() - characteristicsCountPosition - 4 - 1); helper::CopyToBuffer(buffer, backPosition, &characteristicsLength); // length } template -void BP4Serializer::PutVariableCharacteristics( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, const Stats &stats, - std::vector &buffer, typename core::Variable::Span *span) noexcept +void BP4Serializer::PutVariableCharacteristics(const core::Variable &variable, + const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, std::vector &buffer, + typename core::Variable::Span *span) noexcept { // going back at the end const size_t characteristicsCountPosition = buffer.size(); @@ -768,11 +719,10 @@ void BP4Serializer::PutVariableCharacteristics( uint8_t characteristicsCounter = 0; // DIMENSIONS - PutCharacteristicRecord(characteristic_time_index, characteristicsCounter, - stats.Step, buffer); + PutCharacteristicRecord(characteristic_time_index, characteristicsCounter, stats.Step, buffer); - PutCharacteristicRecord(characteristic_file_index, characteristicsCounter, - stats.FileIndex, buffer); + PutCharacteristicRecord(characteristic_file_index, characteristicsCounter, stats.FileIndex, + buffer); uint8_t characteristicID = characteristic_dimensions; helper::InsertToBuffer(buffer, &characteristicID); @@ -780,8 +730,7 @@ void BP4Serializer::PutVariableCharacteristics( helper::InsertToBuffer(buffer, &dimensions); // count const uint16_t dimensionsLength = static_cast(24 * dimensions); helper::InsertToBuffer(buffer, &dimensionsLength); // length - PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, - buffer); + PutDimensionsRecord(blockInfo.Count, blockInfo.Shape, blockInfo.Start, buffer); ++characteristicsCounter; if (blockInfo.Data != nullptr || span != nullptr) @@ -797,22 +746,18 @@ void BP4Serializer::PutVariableCharacteristics( span->m_MinMaxMetadataPositions.second = buffer.size(); } - PutBoundsRecord(variable.m_SingleValue, stats, characteristicsCounter, - buffer); + PutBoundsRecord(variable.m_SingleValue, stats, characteristicsCounter, buffer); } - PutCharacteristicRecord(characteristic_offset, characteristicsCounter, - stats.Offset, buffer); + PutCharacteristicRecord(characteristic_offset, characteristicsCounter, stats.Offset, buffer); - PutCharacteristicRecord(characteristic_payload_offset, - characteristicsCounter, stats.PayloadOffset, - buffer); + PutCharacteristicRecord(characteristic_payload_offset, characteristicsCounter, + stats.PayloadOffset, buffer); if (blockInfo.Operations.size()) { - const bool isZeroCount = - std::all_of(blockInfo.Count.begin(), blockInfo.Count.end(), - [](const size_t i) { return i == 0; }); + const bool isZeroCount = std::all_of(blockInfo.Count.begin(), blockInfo.Count.end(), + [](const size_t i) { return i == 0; }); // do not compress if count dimensions are all zero if (!isZeroCount) @@ -832,8 +777,8 @@ void BP4Serializer::PutVariableCharacteristics( &characteristicsCounter); // count (1) // remove its own length (4) + characteristic counter (1) - const uint32_t characteristicsLength = static_cast( - buffer.size() - characteristicsCountPosition - 4 - 1); + const uint32_t characteristicsLength = + static_cast(buffer.size() - characteristicsCountPosition - 4 - 1); helper::CopyToBuffer(buffer, backPosition, &characteristicsLength); // length @@ -841,9 +786,8 @@ void BP4Serializer::PutVariableCharacteristics( template void BP4Serializer::PutVariableCharacteristicsInData( - const core::Variable &variable, - const typename core::Variable::BPInfo &blockInfo, const Stats &stats, - std::vector &buffer, size_t &position) noexcept + const core::Variable &variable, const typename core::Variable::BPInfo &blockInfo, + const Stats &stats, std::vector &buffer, size_t &position) noexcept { // going back at the end const size_t characteristicsCountPosition = position; @@ -856,8 +800,7 @@ void BP4Serializer::PutVariableCharacteristicsInData( // in the data file (only in metadata file in other function) if (blockInfo.Data != nullptr && !variable.m_SingleValue) { - PutBoundsRecord(variable.m_SingleValue, stats, characteristicsCounter, - buffer, position); + PutBoundsRecord(variable.m_SingleValue, stats, characteristicsCounter, buffer, position); } // END OF CHARACTERISTICS diff --git a/source/adios2/toolkit/format/bp/bpBackCompatOperation/BPBackCompatOperation.h b/source/adios2/toolkit/format/bp/bpBackCompatOperation/BPBackCompatOperation.h index 901b55d0d1..9bc18850ac 100644 --- a/source/adios2/toolkit/format/bp/bpBackCompatOperation/BPBackCompatOperation.h +++ b/source/adios2/toolkit/format/bp/bpBackCompatOperation/BPBackCompatOperation.h @@ -35,11 +35,9 @@ class BPBackCompatOperation * @param buffer contains serialized metadata buffer * @param info parameters info from metadata buffer */ - virtual void GetMetadata(const std::vector &buffer, - Params &info) const noexcept = 0; + virtual void GetMetadata(const std::vector &buffer, Params &info) const noexcept = 0; - virtual void GetData(const char *input, - const helper::BlockOperationInfo &blockOperationInfo, + virtual void GetData(const char *input, const helper::BlockOperationInfo &blockOperationInfo, char *dataOutput) const = 0; }; diff --git a/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.cpp b/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.cpp index 50ad2af857..61ca904763 100644 --- a/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.cpp +++ b/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.cpp @@ -29,72 +29,57 @@ namespace adios2 namespace format { -void BPBackCompatBlosc::GetMetadata(const std::vector &buffer, - Params &info) const noexcept +void BPBackCompatBlosc::GetMetadata(const std::vector &buffer, Params &info) const noexcept { size_t position = 0; - info["InputSize"] = - std::to_string(helper::ReadValue(buffer, position)); - info["OutputSize"] = - std::to_string(helper::ReadValue(buffer, position)); + info["InputSize"] = std::to_string(helper::ReadValue(buffer, position)); + info["OutputSize"] = std::to_string(helper::ReadValue(buffer, position)); } -void BPBackCompatBlosc::GetData( - const char *input, const helper::BlockOperationInfo &blockOperationInfo, - char *dataOutput) const +void BPBackCompatBlosc::GetData(const char *input, + const helper::BlockOperationInfo &blockOperationInfo, + char *dataOutput) const { #ifdef ADIOS2_HAVE_BLOSC2 core::compress::CompressBlosc op((Params())); - const size_t sizeOut = (sizeof(size_t) == 8) - ? static_cast(helper::StringTo( - blockOperationInfo.Info.at("InputSize"), - "when reading Blosc input size")) - : static_cast(helper::StringTo( - blockOperationInfo.Info.at("InputSize"), - "when reading Blosc input size")); + const size_t sizeOut = + (sizeof(size_t) == 8) + ? static_cast(helper::StringTo( + blockOperationInfo.Info.at("InputSize"), "when reading Blosc input size")) + : static_cast(helper::StringTo( + blockOperationInfo.Info.at("InputSize"), "when reading Blosc input size")); Params &info = const_cast(blockOperationInfo.Info); - Decompress(input, blockOperationInfo.PayloadSize, dataOutput, sizeOut, - info); + Decompress(input, blockOperationInfo.PayloadSize, dataOutput, sizeOut, info); #else - throw std::runtime_error( - "ERROR: current ADIOS2 library didn't compile " - "with Blosc, can't read Blosc compressed data, in call " - "to Get\n"); + throw std::runtime_error("ERROR: current ADIOS2 library didn't compile " + "with Blosc, can't read Blosc compressed data, in call " + "to Get\n"); #endif } #ifdef ADIOS2_HAVE_BLOSC2 -size_t BPBackCompatBlosc::Decompress(const void *bufferIn, const size_t sizeIn, - void *dataOut, const size_t sizeOut, - Params &info) const +size_t BPBackCompatBlosc::Decompress(const void *bufferIn, const size_t sizeIn, void *dataOut, + const size_t sizeOut, Params &info) const { assert(sizeIn >= sizeof(DataHeader)); - const bool isChunked = - reinterpret_cast(bufferIn)->IsChunked(); + const bool isChunked = reinterpret_cast(bufferIn)->IsChunked(); size_t decompressedSize = 0u; if (isChunked) - decompressedSize = - DecompressChunkedFormat(bufferIn, sizeIn, dataOut, sizeOut, info); + decompressedSize = DecompressChunkedFormat(bufferIn, sizeIn, dataOut, sizeOut, info); else - decompressedSize = - DecompressOldFormat(bufferIn, sizeIn, dataOut, sizeOut, info); + decompressedSize = DecompressOldFormat(bufferIn, sizeIn, dataOut, sizeOut, info); return decompressedSize; } -bool BPBackCompatBlosc::IsDataTypeValid(const DataType type) const -{ - return true; -} +bool BPBackCompatBlosc::IsDataTypeValid(const DataType type) const { return true; } -size_t BPBackCompatBlosc::DecompressChunkedFormat(const void *bufferIn, - const size_t sizeIn, - void *dataOut, - const size_t sizeOut, +size_t BPBackCompatBlosc::DecompressChunkedFormat(const void *bufferIn, const size_t sizeIn, + void *dataOut, const size_t sizeOut, Params &info) const { const DataHeader *dataPtr = reinterpret_cast(bufferIn); @@ -108,8 +93,7 @@ size_t BPBackCompatBlosc::DecompressChunkedFormat(const void *bufferIn, size_t inputOffset = 0u; size_t currentOutputSize = 0u; - const uint8_t *inputDataBuff = - reinterpret_cast(bufferIn) + sizeof(DataHeader); + const uint8_t *inputDataBuff = reinterpret_cast(bufferIn) + sizeof(DataHeader); size_t uncompressedSize = sizeOut; @@ -136,19 +120,15 @@ size_t BPBackCompatBlosc::DecompressChunkedFormat(const void *bufferIn, * * we need only the compressed size ( source address + 12 byte) */ - bloscSize_t max_inputDataSize = - *reinterpret_cast(in_ptr + 12u); + bloscSize_t max_inputDataSize = *reinterpret_cast(in_ptr + 12u); uint8_t *out_ptr = outputBuff + currentOutputSize; - size_t outputChunkSize = - std::min(uncompressedSize - currentOutputSize, - static_cast(BLOSC2_MAX_BUFFERSIZE)); - bloscSize_t max_output_size = - static_cast(outputChunkSize); + size_t outputChunkSize = std::min(uncompressedSize - currentOutputSize, + static_cast(BLOSC2_MAX_BUFFERSIZE)); + bloscSize_t max_output_size = static_cast(outputChunkSize); - bloscSize_t decompressdSize = - blosc1_decompress(in_ptr, out_ptr, max_output_size); + bloscSize_t decompressdSize = blosc1_decompress(in_ptr, out_ptr, max_output_size); if (decompressdSize > 0) currentOutputSize += static_cast(decompressdSize); @@ -175,10 +155,8 @@ size_t BPBackCompatBlosc::DecompressChunkedFormat(const void *bufferIn, return currentOutputSize; } -size_t BPBackCompatBlosc::DecompressOldFormat(const void *bufferIn, - const size_t sizeIn, - void *dataOut, - const size_t sizeOut, +size_t BPBackCompatBlosc::DecompressOldFormat(const void *bufferIn, const size_t sizeIn, + void *dataOut, const size_t sizeOut, Params &info) const { blosc2_init(); diff --git a/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.h b/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.h index 7b7a5899f4..b3312aed4c 100644 --- a/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.h +++ b/source/adios2/toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.h @@ -33,11 +33,9 @@ class BPBackCompatBlosc : public BPBackCompatOperation ~BPBackCompatBlosc() = default; - void GetMetadata(const std::vector &buffer, - Params &info) const noexcept final; + void GetMetadata(const std::vector &buffer, Params &info) const noexcept final; - void GetData(const char *input, - const helper::BlockOperationInfo &blockOperationInfo, + void GetData(const char *input, const helper::BlockOperationInfo &blockOperationInfo, char *dataOutput) const final; private: @@ -58,15 +56,13 @@ class BPBackCompatBlosc : public BPBackCompatOperation using bloscSize_t = int32_t; /** Decompress chunked data */ - size_t DecompressChunkedFormat(const void *bufferIn, const size_t sizeIn, - void *dataOut, const size_t sizeOut, - Params &info) const; + size_t DecompressChunkedFormat(const void *bufferIn, const size_t sizeIn, void *dataOut, + const size_t sizeOut, Params &info) const; /** Decompress data written before ADIOS2 supported large variables larger * 2GiB. */ - size_t DecompressOldFormat(const void *bufferIn, const size_t sizeIn, - void *dataOut, const size_t sizeOut, - Params &info) const; + size_t DecompressOldFormat(const void *bufferIn, const size_t sizeIn, void *dataOut, + const size_t sizeOut, Params &info) const; ADIOS2_CLASS_PACKED(DataHeader) { @@ -90,10 +86,7 @@ class BPBackCompatBlosc : public BPBackCompatOperation uint32_t numberOfChunks = 0u; public: - void SetNumChunks(const uint32_t numChunks) - { - numberOfChunks = numChunks; - } + void SetNumChunks(const uint32_t numChunks) { numberOfChunks = numChunks; } uint32_t GetNumChunks() const { return numberOfChunks; } bool IsChunked() const { return format == 0; } diff --git a/source/adios2/toolkit/format/bp5/BP5Base.cpp b/source/adios2/toolkit/format/bp5/BP5Base.cpp index a84a001b78..a564167341 100644 --- a/source/adios2/toolkit/format/bp5/BP5Base.cpp +++ b/source/adios2/toolkit/format/bp5/BP5Base.cpp @@ -29,8 +29,7 @@ void BP5Base::BP5BitfieldSet(struct BP5MetadataInfoStruct *MBase, int Bit) const int ElementBit = Bit % (sizeof(size_t) * 8); if (static_cast(Element) >= MBase->BitFieldCount) { - MBase->BitField = - (size_t *)realloc(MBase->BitField, sizeof(size_t) * (Element + 1)); + MBase->BitField = (size_t *)realloc(MBase->BitField, sizeof(size_t) * (Element + 1)); memset(MBase->BitField + MBase->BitFieldCount, 0, (Element - MBase->BitFieldCount + 1) * sizeof(size_t)); MBase->BitFieldCount = Element + 1; @@ -46,31 +45,24 @@ int BP5Base::BP5BitfieldTest(struct BP5MetadataInfoStruct *MBase, int Bit) const { return 0; } - return ((MBase->BitField[Element] & ((size_t)1 << ElementBit)) == - ((size_t)1 << ElementBit)); + return ((MBase->BitField[Element] & ((size_t)1 << ElementBit)) == ((size_t)1 << ElementBit)); } -#define BASE_FIELD_ENTRIES \ - {"Dims", "integer", sizeof(size_t), \ - FMOffset(BP5Base::MetaArrayRec *, Dims)}, \ - {"BlockCount", "integer", sizeof(size_t), \ - FMOffset(BP5Base::MetaArrayRec *, BlockCount)}, \ - {"DBCount", "integer", sizeof(size_t), \ - FMOffset(BP5Base::MetaArrayRec *, DBCount)}, \ - {"Shape", "integer[Dims]", sizeof(size_t), \ - FMOffset(BP5Base::MetaArrayRec *, Shape)}, \ - {"Count", "integer[DBCount]", sizeof(size_t), \ - FMOffset(BP5Base::MetaArrayRec *, Count)}, \ - {"Offset", "integer[DBCount]", sizeof(size_t), \ - FMOffset(BP5Base::MetaArrayRec *, Offsets)}, \ - {"DataBlockLocation", "integer[BlockCount]", sizeof(size_t), \ +#define BASE_FIELD_ENTRIES \ + {"Dims", "integer", sizeof(size_t), FMOffset(BP5Base::MetaArrayRec *, Dims)}, \ + {"BlockCount", "integer", sizeof(size_t), FMOffset(BP5Base::MetaArrayRec *, BlockCount)}, \ + {"DBCount", "integer", sizeof(size_t), FMOffset(BP5Base::MetaArrayRec *, DBCount)}, \ + {"Shape", "integer[Dims]", sizeof(size_t), FMOffset(BP5Base::MetaArrayRec *, Shape)}, \ + {"Count", "integer[DBCount]", sizeof(size_t), FMOffset(BP5Base::MetaArrayRec *, Count)}, \ + {"Offset", "integer[DBCount]", sizeof(size_t), \ + FMOffset(BP5Base::MetaArrayRec *, Offsets)}, \ + {"DataBlockLocation", "integer[BlockCount]", sizeof(size_t), \ FMOffset(BP5Base::MetaArrayRec *, DataBlockLocation)}, static FMField MetaArrayRecList[] = {BASE_FIELD_ENTRIES{NULL, NULL, 0, 0}}; static FMField MetaArrayRecOperatorList[] = { - BASE_FIELD_ENTRIES{ - "DataBlockSize", "integer[BlockCount]", sizeof(size_t), - FMOffset(BP5Base::MetaArrayRecOperator *, DataBlockSize)}, + BASE_FIELD_ENTRIES{"DataBlockSize", "integer[BlockCount]", sizeof(size_t), + FMOffset(BP5Base::MetaArrayRecOperator *, DataBlockSize)}, {NULL, NULL, 0, 0}}; static FMField MetaArrayRecMM1List[] = { @@ -79,11 +71,9 @@ static FMField MetaArrayRecMM1List[] = { {NULL, NULL, 0, 0}}; static FMField MetaArrayRecOperatorMM1List[] = { - BASE_FIELD_ENTRIES{ - "DataBlockSize", "integer[BlockCount]", sizeof(size_t), - FMOffset(BP5Base::MetaArrayRecOperator *, DataBlockSize)}, - {"MinMax", "char[2][BlockCount]", 1, - FMOffset(BP5Base::MetaArrayRecOperatorMM *, MinMax)}, + BASE_FIELD_ENTRIES{"DataBlockSize", "integer[BlockCount]", sizeof(size_t), + FMOffset(BP5Base::MetaArrayRecOperator *, DataBlockSize)}, + {"MinMax", "char[2][BlockCount]", 1, FMOffset(BP5Base::MetaArrayRecOperatorMM *, MinMax)}, {NULL, NULL, 0, 0}}; static FMField MetaArrayRecMM2List[] = { BASE_FIELD_ENTRIES{"MinMax", "char[4][BlockCount]", 1, @@ -91,11 +81,9 @@ static FMField MetaArrayRecMM2List[] = { {NULL, NULL, 0, 0}}; static FMField MetaArrayRecOperatorMM2List[] = { - BASE_FIELD_ENTRIES{ - "DataBlockSize", "integer[BlockCount]", sizeof(size_t), - FMOffset(BP5Base::MetaArrayRecOperator *, DataBlockSize)}, - {"MinMax", "char[4][BlockCount]", 1, - FMOffset(BP5Base::MetaArrayRecOperatorMM *, MinMax)}, + BASE_FIELD_ENTRIES{"DataBlockSize", "integer[BlockCount]", sizeof(size_t), + FMOffset(BP5Base::MetaArrayRecOperator *, DataBlockSize)}, + {"MinMax", "char[4][BlockCount]", 1, FMOffset(BP5Base::MetaArrayRecOperatorMM *, MinMax)}, {NULL, NULL, 0, 0}}; static FMField MetaArrayRecMM4List[] = { BASE_FIELD_ENTRIES{"MinMax", "char[8][BlockCount]", 1, @@ -103,11 +91,9 @@ static FMField MetaArrayRecMM4List[] = { {NULL, NULL, 0, 0}}; static FMField MetaArrayRecOperatorMM4List[] = { - BASE_FIELD_ENTRIES{ - "DataBlockSize", "integer[BlockCount]", sizeof(size_t), - FMOffset(BP5Base::MetaArrayRecOperator *, DataBlockSize)}, - {"MinMax", "char[8][BlockCount]", 1, - FMOffset(BP5Base::MetaArrayRecOperatorMM *, MinMax)}, + BASE_FIELD_ENTRIES{"DataBlockSize", "integer[BlockCount]", sizeof(size_t), + FMOffset(BP5Base::MetaArrayRecOperator *, DataBlockSize)}, + {"MinMax", "char[8][BlockCount]", 1, FMOffset(BP5Base::MetaArrayRecOperatorMM *, MinMax)}, {NULL, NULL, 0, 0}}; static FMField MetaArrayRecMM8List[] = { BASE_FIELD_ENTRIES{"MinMax", "char[16][BlockCount]", 1, @@ -115,11 +101,9 @@ static FMField MetaArrayRecMM8List[] = { {NULL, NULL, 0, 0}}; static FMField MetaArrayRecOperatorMM8List[] = { - BASE_FIELD_ENTRIES{ - "DataBlockSize", "integer[BlockCount]", sizeof(size_t), - FMOffset(BP5Base::MetaArrayRecOperator *, DataBlockSize)}, - {"MinMax", "char[16][BlockCount]", 1, - FMOffset(BP5Base::MetaArrayRecOperatorMM *, MinMax)}, + BASE_FIELD_ENTRIES{"DataBlockSize", "integer[BlockCount]", sizeof(size_t), + FMOffset(BP5Base::MetaArrayRecOperator *, DataBlockSize)}, + {"MinMax", "char[16][BlockCount]", 1, FMOffset(BP5Base::MetaArrayRecOperatorMM *, MinMax)}, {NULL, NULL, 0, 0}}; static FMField MetaArrayRecMM16List[] = { BASE_FIELD_ENTRIES{"MinMax", "char[32][BlockCount]", 1, @@ -127,11 +111,9 @@ static FMField MetaArrayRecMM16List[] = { {NULL, NULL, 0, 0}}; static FMField MetaArrayRecOperatorMM16List[] = { - BASE_FIELD_ENTRIES{ - "DataBlockSize", "integer[BlockCount]", sizeof(size_t), - FMOffset(BP5Base::MetaArrayRecOperator *, DataBlockSize)}, - {"MinMax", "char[32][BlockCount]", 1, - FMOffset(BP5Base::MetaArrayRecOperatorMM *, MinMax)}, + BASE_FIELD_ENTRIES{"DataBlockSize", "integer[BlockCount]", sizeof(size_t), + FMOffset(BP5Base::MetaArrayRecOperator *, DataBlockSize)}, + {"MinMax", "char[32][BlockCount]", 1, FMOffset(BP5Base::MetaArrayRecOperatorMM *, MinMax)}, {NULL, NULL, 0, 0}}; #undef BASE_FIELD_ENTRIES diff --git a/source/adios2/toolkit/format/bp5/BP5Base.h b/source/adios2/toolkit/format/bp5/BP5Base.h index 00bb31f9aa..c02020d827 100644 --- a/source/adios2/toolkit/format/bp5/BP5Base.h +++ b/source/adios2/toolkit/format/bp5/BP5Base.h @@ -37,14 +37,14 @@ class BP5Base size_t MetaMetaIDLen; }; -#define BASE_FIELDS \ - size_t Dims; /* How many dimensions does this array have */ \ - size_t BlockCount; /* How many blocks are written */ \ - size_t DBCount; /* Dimens * BlockCount */ \ - size_t *Shape; /* Global dimensionality [Dims] NULL for local */ \ - size_t *Count; /* Per-block Counts [DBCount] */ \ - size_t *Offsets; /* Per-block Offsets [DBCount] NULL for local \ - */ \ +#define BASE_FIELDS \ + size_t Dims; /* How many dimensions does this array have */ \ + size_t BlockCount; /* How many blocks are written */ \ + size_t DBCount; /* Dimens * BlockCount */ \ + size_t *Shape; /* Global dimensionality [Dims] NULL for local */ \ + size_t *Count; /* Per-block Counts [DBCount] */ \ + size_t *Offsets; /* Per-block Offsets [DBCount] NULL for local \ + */ \ size_t *DataBlockLocation; /* Per-block Offset in PG [BlockCount] */ typedef struct _MetaArrayRec @@ -97,8 +97,7 @@ class BP5Base struct BP5AttrStruct { size_t PrimAttrCount = 0; - struct PrimitiveTypeAttr *PrimAttrs = - (struct PrimitiveTypeAttr *)malloc(1); + struct PrimitiveTypeAttr *PrimAttrs = (struct PrimitiveTypeAttr *)malloc(1); size_t StrAttrCount = 0; struct StringArrayAttr *StrAttrs = (struct StringArrayAttr *)malloc(1); }; @@ -127,25 +126,20 @@ class BP5Base {"name", "string", sizeof(char *), FMOffset(PrimitiveTypeAttr *, Name)}, {"TotalElementSize", "integer", sizeof(size_t), FMOffset(PrimitiveTypeAttr *, TotalElementSize)}, - {"Values", "char[TotalElementSize]", 1, - FMOffset(PrimitiveTypeAttr *, Values)}, + {"Values", "char[TotalElementSize]", 1, FMOffset(PrimitiveTypeAttr *, Values)}, {NULL, NULL, 0, 0}}; FMField string_attr_field_list[4] = { {"name", "string", sizeof(char *), FMOffset(StringArrayAttr *, Name)}, - {"ElementCount", "integer", sizeof(size_t), - FMOffset(StringArrayAttr *, ElementCount)}, - {"Values", "string[ElementCount]", sizeof(char *), - FMOffset(StringArrayAttr *, Values)}, + {"ElementCount", "integer", sizeof(size_t), FMOffset(StringArrayAttr *, ElementCount)}, + {"Values", "string[ElementCount]", sizeof(char *), FMOffset(StringArrayAttr *, Values)}, {NULL, NULL, 0, 0}}; FMField bp5_attr_field_list[5] = { - {"PrimAttrCount", "integer", sizeof(size_t), - FMOffset(BP5AttrStruct *, PrimAttrCount)}, + {"PrimAttrCount", "integer", sizeof(size_t), FMOffset(BP5AttrStruct *, PrimAttrCount)}, {"PrimAttrs", "PrimAttr[PrimAttrCount]", sizeof(PrimitiveTypeAttr), FMOffset(BP5AttrStruct *, PrimAttrs)}, - {"StrAttrCount", "integer", sizeof(size_t), - FMOffset(BP5AttrStruct *, StrAttrCount)}, + {"StrAttrCount", "integer", sizeof(size_t), FMOffset(BP5AttrStruct *, StrAttrCount)}, {"StrAttrs", "StrAttr[StrAttrCount]", sizeof(StringArrayAttr), FMOffset(BP5AttrStruct *, StrAttrs)}, {NULL, NULL, 0, 0}}; diff --git a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp index c8c848f04f..7c9565ed85 100644 --- a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp +++ b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp @@ -48,8 +48,7 @@ namespace adios2 { namespace format { -static void ApplyElementMinMax(MinMaxStruct &MinMax, DataType Type, - void *Element); +static void ApplyElementMinMax(MinMaxStruct &MinMax, DataType Type, void *Element); void BP5Deserializer::InstallMetaMetaData(MetaMetaInfoBlock &MM) { @@ -57,9 +56,8 @@ void BP5Deserializer::InstallMetaMetaData(MetaMetaInfoBlock &MM) char *MetaMetaInfo = (char *)malloc(MM.MetaMetaInfoLen); memcpy(FormatID, MM.MetaMetaID, MM.MetaMetaIDLen); memcpy(MetaMetaInfo, MM.MetaMetaInfo, MM.MetaMetaInfoLen); - load_external_format_FMcontext(FMContext_from_FFS(ReaderFFSContext), - FormatID, (int)MM.MetaMetaIDLen, - MetaMetaInfo); + load_external_format_FMcontext(FMContext_from_FFS(ReaderFFSContext), FormatID, + (int)MM.MetaMetaIDLen, MetaMetaInfo); free(FormatID); } @@ -134,8 +132,7 @@ DataType BP5Deserializer::TranslateFFSType2ADIOS(const char *Type, int size) { return DataType::Float; } - else if ((sizeof(long double) != sizeof(double)) && - (size == sizeof(long double))) + else if ((sizeof(long double) != sizeof(double)) && (size == sizeof(long double))) { return DataType::LongDouble; } @@ -160,8 +157,7 @@ DataType BP5Deserializer::TranslateFFSType2ADIOS(const char *Type, int size) return DataType::None; } -const char *BP5Deserializer::BreakdownVarName(const char *Name, - DataType *type_p, +const char *BP5Deserializer::BreakdownVarName(const char *Name, DataType *type_p, int *element_size_p) { // const char *NameStart = strchr(strchr(Name + 4, '_') + 1, '_') + 1; @@ -183,13 +179,11 @@ const char *BP5Deserializer::BreakdownVarName(const char *Name, return p; } -void BP5Deserializer::BreakdownFieldType(const char *FieldType, bool &Operator, - bool &MinMax) +void BP5Deserializer::BreakdownFieldType(const char *FieldType, bool &Operator, bool &MinMax) { if (FieldType[0] != 'M') { - throw std::runtime_error( - "BP5 unable to parse metadata, likely old version"); + throw std::runtime_error("BP5 unable to parse metadata, likely old version"); } // should start with "MetaArray" @@ -207,10 +201,8 @@ void BP5Deserializer::BreakdownFieldType(const char *FieldType, bool &Operator, } } -void BP5Deserializer::BreakdownV1ArrayName(const char *Name, char **base_name_p, - DataType *type_p, - int *element_size_p, bool &Operator, - bool &MinMax) +void BP5Deserializer::BreakdownV1ArrayName(const char *Name, char **base_name_p, DataType *type_p, + int *element_size_p, bool &Operator, bool &MinMax) { int Type; int ElementSize; @@ -241,9 +233,8 @@ void BP5Deserializer::BreakdownV1ArrayName(const char *Name, char **base_name_p, *(strrchr(*base_name_p, '_')) = 0; } -void BP5Deserializer::BreakdownArrayName(const char *Name, char **base_name_p, - DataType *type_p, int *element_size_p, - FMFormat *Format) +void BP5Deserializer::BreakdownArrayName(const char *Name, char **base_name_p, DataType *type_p, + int *element_size_p, FMFormat *Format) { /* string formatted as bp5_%d_%d_actualname */ char *p; @@ -267,8 +258,7 @@ void BP5Deserializer::BreakdownArrayName(const char *Name, char **base_name_p, p += 2; } ++p; // skip '_' - *Format = - FMformat_from_ID(FMContext_from_FFS(ReaderFFSContext), &Buffer[0]); + *Format = FMformat_from_ID(FMContext_from_FFS(ReaderFFSContext), &Buffer[0]); } else { @@ -311,8 +301,7 @@ BP5Deserializer::ControlInfo *BP5Deserializer::BuildControl(FMFormat Format) FMFieldList FieldList = FormatList[0].field_list; while (strncmp(FieldList->field_name, "BitField", 8) == 0) FieldList++; - while (FieldList->field_name && - (strncmp(FieldList->field_name, "DataBlockSize", 8) == 0)) + while (FieldList->field_name && (strncmp(FieldList->field_name, "DataBlockSize", 8) == 0)) FieldList++; int i = 0; int ControlCount = 0; @@ -323,8 +312,7 @@ BP5Deserializer::ControlInfo *BP5Deserializer::BuildControl(FMFormat Format) size_t VarIndex = 0; while (FieldList[i].field_name) { - ret = (ControlInfo *)realloc( - ret, sizeof(*ret) + ControlCount * sizeof(struct ControlInfo)); + ret = (ControlInfo *)realloc(ret, sizeof(*ret) + ControlCount * sizeof(struct ControlInfo)); struct ControlStruct *C = &(ret->Controls[ControlCount]); ControlCount++; @@ -362,14 +350,14 @@ BP5Deserializer::ControlInfo *BP5Deserializer::BuildControl(FMFormat Format) V1_fields = false; if (V1_fields) { - BreakdownV1ArrayName(FieldList[i + 4].field_name, &ArrayName, - &Type, &ElementSize, Operator, MinMax); + BreakdownV1ArrayName(FieldList[i + 4].field_name, &ArrayName, &Type, &ElementSize, + Operator, MinMax); } else { BreakdownFieldType(FieldList[i].field_type, Operator, MinMax); - BreakdownArrayName(FieldList[i].field_name, &ArrayName, &Type, - &ElementSize, &StructFormat); + BreakdownArrayName(FieldList[i].field_name, &ArrayName, &Type, &ElementSize, + &StructFormat); } VarRec = LookupVarByName(ArrayName); if (!VarRec) @@ -380,30 +368,27 @@ BP5Deserializer::ControlInfo *BP5Deserializer::BuildControl(FMFormat Format) VarRec->OrigShapeID = C->OrigShapeID; if (StructFormat) { - core::StructDefinition *Def = new core::StructDefinition( - name_of_FMformat(StructFormat), ElementSize); + core::StructDefinition *Def = + new core::StructDefinition(name_of_FMformat(StructFormat), ElementSize); - FMStructDescList StructList = - format_list_of_FMFormat(StructFormat); + FMStructDescList StructList = format_list_of_FMFormat(StructFormat); FMFieldList List = StructList[0].field_list; while (List->field_name != NULL) { char *ind = (char *)strchr(List->field_type, '['); if (!ind) { - DataType Type = TranslateFFSType2ADIOS( - List->field_type, List->field_size); - Def->AddField(List->field_name, List->field_offset, - Type); + DataType Type = + TranslateFFSType2ADIOS(List->field_type, List->field_size); + Def->AddField(List->field_name, List->field_offset, Type); } else { *ind = 0; // terminate string temporarily - DataType Type = TranslateFFSType2ADIOS( - List->field_type, List->field_size); + DataType Type = + TranslateFFSType2ADIOS(List->field_type, List->field_size); size_t Count = strtol(ind + 1, NULL, 10); - Def->AddField(List->field_name, List->field_offset, - Type, Count); + Def->AddField(List->field_name, List->field_offset, Type, Count); *ind = '['; // restore string } List++; @@ -443,8 +428,8 @@ BP5Deserializer::ControlInfo *BP5Deserializer::BuildControl(FMFormat Format) VarRec = LookupVarByName(FieldName); if (!VarRec) { - DataType Type = TranslateFFSType2ADIOS(FieldList[i].field_type, - FieldList[i].field_size); + DataType Type = + TranslateFFSType2ADIOS(FieldList[i].field_type, FieldList[i].field_size); VarRec = CreateVarRec(FieldName); VarRec->DimCount = 0; C->Type = Type; @@ -472,8 +457,7 @@ BP5Deserializer::ControlInfo *BP5Deserializer::BuildControl(FMFormat Format) return ret; } -void BP5Deserializer::ReverseDimensions(size_t *Dimensions, size_t count, - size_t times) +void BP5Deserializer::ReverseDimensions(size_t *Dimensions, size_t count, size_t times) { size_t Offset = 0; for (size_t j = 0; j < times; j++) @@ -488,22 +472,21 @@ void BP5Deserializer::ReverseDimensions(size_t *Dimensions, size_t count, } } -void *BP5Deserializer::VarSetup(core::Engine *engine, const char *variableName, - const DataType Type, void *data) +void *BP5Deserializer::VarSetup(core::Engine *engine, const char *variableName, const DataType Type, + void *data) { if (Type == adios2::DataType::Struct) { return (void *)NULL; } -#define declare_type(T) \ - else if (Type == helper::GetDataType()) \ - { \ - core::Variable *variable = \ - &(engine->m_IO.DefineVariable(variableName)); \ - engine->RegisterCreatedVariable(variable); \ - variable->SetData((T *)data); \ - variable->m_AvailableStepsCount = 1; \ - return (void *)variable; \ +#define declare_type(T) \ + else if (Type == helper::GetDataType()) \ + { \ + core::Variable *variable = &(engine->m_IO.DefineVariable(variableName)); \ + engine->RegisterCreatedVariable(variable); \ + variable->SetData((T *)data); \ + variable->m_AvailableStepsCount = 1; \ + return (void *)variable; \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) @@ -512,11 +495,9 @@ void *BP5Deserializer::VarSetup(core::Engine *engine, const char *variableName, return (void *)NULL; }; -void *BP5Deserializer::ArrayVarSetup(core::Engine *engine, - const char *variableName, - const DataType type, int DimCount, - size_t *Shape, size_t *Start, - size_t *Count, core::StructDefinition *Def, +void *BP5Deserializer::ArrayVarSetup(core::Engine *engine, const char *variableName, + const DataType type, int DimCount, size_t *Shape, + size_t *Start, size_t *Count, core::StructDefinition *Def, core::StructDefinition *ReaderDef) { std::vector VecShape; @@ -548,27 +529,26 @@ void *BP5Deserializer::ArrayVarSetup(core::Engine *engine, if (Type == adios2::DataType::Struct) { - core::VariableStruct *variable = &(engine->m_IO.DefineStructVariable( - variableName, *Def, VecShape, VecStart, VecCount)); + core::VariableStruct *variable = + &(engine->m_IO.DefineStructVariable(variableName, *Def, VecShape, VecStart, VecCount)); engine->RegisterCreatedVariable(variable); variable->m_ReadStructDefinition = ReaderDef; return (void *)variable; } -#define declare_type(T) \ - else if (Type == helper::GetDataType()) \ - { \ - core::Variable *variable = \ - &(engine->m_IO.DefineVariable(variableName)); \ - engine->RegisterCreatedVariable(variable); \ - variable->m_Shape = VecShape; \ - variable->m_Start = VecStart; \ - variable->m_Count = VecCount; \ - variable->m_AvailableStepsCount = 1; \ - variable->m_ShapeID = ShapeID::GlobalArray; \ - variable->m_SingleValue = false; \ - variable->m_Min = std::numeric_limits::max(); \ - variable->m_Max = std::numeric_limits::min(); \ - return (void *)variable; \ +#define declare_type(T) \ + else if (Type == helper::GetDataType()) \ + { \ + core::Variable *variable = &(engine->m_IO.DefineVariable(variableName)); \ + engine->RegisterCreatedVariable(variable); \ + variable->m_Shape = VecShape; \ + variable->m_Start = VecStart; \ + variable->m_Count = VecCount; \ + variable->m_AvailableStepsCount = 1; \ + variable->m_ShapeID = ShapeID::GlobalArray; \ + variable->m_SingleValue = false; \ + variable->m_Min = std::numeric_limits::max(); \ + variable->m_Max = std::numeric_limits::min(); \ + return (void *)variable; \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_type) #undef declare_type @@ -625,19 +605,17 @@ size_t BP5Deserializer::WriterCohortSize(size_t Step) const } } -void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, - size_t WriterRank, size_t Step) +void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, size_t WriterRank, + size_t Step) { const size_t writerCohortSize = WriterCohortSize(Step); FFSTypeHandle FFSformat; void *BaseData; static int DumpMetadata = -1; - FFSformat = - FFSTypeHandle_from_encode(ReaderFFSContext, (char *)MetadataBlock); + FFSformat = FFSTypeHandle_from_encode(ReaderFFSContext, (char *)MetadataBlock); if (!FFSformat) { - helper::Throw("Toolkit", "format::BP5Deserializer", - "InstallMetaData", + helper::Throw("Toolkit", "format::BP5Deserializer", "InstallMetaData", "Internal error or file corruption, no " "know format for Metadata Block"); } @@ -645,8 +623,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, { FMContext FMC = FMContext_from_FFS(ReaderFFSContext); FMFormat Format = FMformat_from_ID(FMC, (char *)MetadataBlock); - FMStructDescList List = - FMcopy_struct_list(format_list_of_FMFormat(Format)); + FMStructDescList List = FMcopy_struct_list(format_list_of_FMFormat(Format)); // GSE - restrict to homogenous FTM FMlocalize_structs(List); establish_conversion(ReaderFFSContext, FFSformat, List); FMfree_struct_list(List); @@ -657,8 +634,8 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, } else { - auto DecodedLength = FFS_est_decode_length( - ReaderFFSContext, (char *)MetadataBlock, BlockLen); + auto DecodedLength = + FFS_est_decode_length(ReaderFFSContext, (char *)MetadataBlock, BlockLen); BaseData = malloc(DecodedLength); FFSdecode_to_buffer(ReaderFFSContext, (char *)MetadataBlock, BaseData); } @@ -668,8 +645,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, } if (DumpMetadata) { - printf("\nIncomingMetadatablock from WriterRank %d is %p :\n", - (int)WriterRank, BaseData); + printf("\nIncomingMetadatablock from WriterRank %d is %p :\n", (int)WriterRank, BaseData); FMdump_data(FMFormat_of_original(FFSformat), BaseData, 1024000); printf("\n\n"); } @@ -767,8 +743,8 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, size_t CurJoinedDimenOffset = 0; size_t *JoinedDimenOffsetArray = NULL; if (JoinedDimenTotal) - JoinedDimenOffsetArray = (size_t *)malloc( - JoinedDimenTotal * writerCohortSize * sizeof(size_t)); + JoinedDimenOffsetArray = + (size_t *)malloc(JoinedDimenTotal * writerCohortSize * sizeof(size_t)); // store this away so it can be deallocated later (*m_JoinedDimenOffsetArrays)[WriterRank] = JoinedDimenOffsetArray; @@ -795,8 +771,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, } else { - if ((VarRec->AbsStepFromRel.size() == 0) || - (VarRec->AbsStepFromRel.back() != Step)) + if ((VarRec->AbsStepFromRel.size() == 0) || (VarRec->AbsStepFromRel.back() != Step)) { VarRec->AbsStepFromRel.push_back(Step); } @@ -806,25 +781,19 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, (ControlFields[i].OrigShapeID == ShapeID::JoinedArray)) { MetaArrayRec *meta_base = (MetaArrayRec *)field_data; - size_t BlockCount = - meta_base->Dims ? meta_base->DBCount / meta_base->Dims : 1; - if ((meta_base->Dims > 1) && - (m_WriterIsRowMajor != m_ReaderIsRowMajor)) + size_t BlockCount = meta_base->Dims ? meta_base->DBCount / meta_base->Dims : 1; + if ((meta_base->Dims > 1) && (m_WriterIsRowMajor != m_ReaderIsRowMajor)) { /* if we're getting data from someone of the other array * gender, switcheroo */ - ReverseDimensions(meta_base->Count, meta_base->Dims, - BlockCount); - if ((ControlFields[i].OrigShapeID == - ShapeID::GlobalArray) || + ReverseDimensions(meta_base->Count, meta_base->Dims, BlockCount); + if ((ControlFields[i].OrigShapeID == ShapeID::GlobalArray) || (ControlFields[i].OrigShapeID == ShapeID::JoinedArray)) { ReverseDimensions(meta_base->Shape, meta_base->Dims, 1); - if (ControlFields[i].OrigShapeID == - ShapeID::GlobalArray) + if (ControlFields[i].OrigShapeID == ShapeID::GlobalArray) { - ReverseDimensions(meta_base->Offsets, - meta_base->Dims, BlockCount); + ReverseDimensions(meta_base->Offsets, meta_base->Dims, BlockCount); } } } @@ -836,8 +805,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, if (ControlFields[i].OrigShapeID == ShapeID::JoinedArray) { // setup Offsets - meta_base->Offsets = - &JoinedDimenOffsetArray[CurJoinedDimenOffset]; + meta_base->Offsets = &JoinedDimenOffsetArray[CurJoinedDimenOffset]; CurJoinedDimenOffset += meta_base->DBCount; for (size_t b = 0; b < BlockCount; b++) @@ -847,8 +815,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, { // Offset of this new block is the prior total size, // stored in Shape - PreviousJoinedOffset = - VarRec->LastJoinedShape[VarRec->JoinedDimen]; + PreviousJoinedOffset = VarRec->LastJoinedShape[VarRec->JoinedDimen]; } else { @@ -860,8 +827,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, VarRec->LastJoinedShape[VarRec->JoinedDimen] = 0; } VarRec->LastJoinedShape[VarRec->JoinedDimen] += - meta_base->Count[(b * meta_base->Dims) + - VarRec->JoinedDimen]; + meta_base->Count[(b * meta_base->Dims) + VarRec->JoinedDimen]; for (size_t i = 0; i < meta_base->Dims; i++) { if (i == VarRec->JoinedDimen) @@ -871,30 +837,26 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, } else { - meta_base->Offsets[(b * meta_base->Dims) + i] = - 0; + meta_base->Offsets[(b * meta_base->Dims) + i] = 0; } } - VarRec->LastJoinedOffset = - &meta_base->Offsets[(b * meta_base->Dims)]; + VarRec->LastJoinedOffset = &meta_base->Offsets[(b * meta_base->Dims)]; } } if (!VarRec->Variable) { VarRec->Variable = - ArrayVarSetup(m_Engine, VarRec->VarName, VarRec->Type, - (int)meta_base->Dims, meta_base->Shape, - meta_base->Offsets, meta_base->Count, + ArrayVarSetup(m_Engine, VarRec->VarName, VarRec->Type, (int)meta_base->Dims, + meta_base->Shape, meta_base->Offsets, meta_base->Count, VarRec->Def, VarRec->ReaderDef); - static_cast(VarRec->Variable)->m_Engine = - m_Engine; + static_cast(VarRec->Variable)->m_Engine = m_Engine; VarByKey[VarRec->Variable] = VarRec; VarRec->LastTSAdded = Step; // starts at 1 if (!meta_base->Shape) { - static_cast(VarRec->Variable) - ->m_ShapeID = ShapeID::LocalArray; + static_cast(VarRec->Variable)->m_ShapeID = + ShapeID::LocalArray; } } @@ -905,14 +867,12 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, { VarRec->PerWriterBlockStart[WriterRank] = 0; if (writerCohortSize > 1) - VarRec->PerWriterBlockStart[WriterRank + 1] = - BlockCount; + VarRec->PerWriterBlockStart[WriterRank + 1] = BlockCount; } if (WriterRank < static_cast(writerCohortSize - 1)) { VarRec->PerWriterBlockStart[WriterRank + 1] = - VarRec->PerWriterBlockStart[WriterRank] + - BlockCount; + VarRec->PerWriterBlockStart[WriterRank] + BlockCount; } } } @@ -926,22 +886,19 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, // reader size_t zero = 0; size_t writerSize = writerCohortSize; - VarRec->Variable = ArrayVarSetup( - m_Engine, VarRec->VarName, VarRec->Type, 1, - &writerSize, &zero, &writerSize, VarRec->Def, - VarRec->ReaderDef); + VarRec->Variable = + ArrayVarSetup(m_Engine, VarRec->VarName, VarRec->Type, 1, &writerSize, + &zero, &writerSize, VarRec->Def, VarRec->ReaderDef); auto VB = static_cast(VarRec->Variable); - static_cast(VarRec->Variable) - ->m_Engine = m_Engine; + static_cast(VarRec->Variable)->m_Engine = m_Engine; VB->m_ShapeID = ShapeID::GlobalArray; } else { // Global single value - VarRec->Variable = VarSetup(m_Engine, VarRec->VarName, - VarRec->Type, field_data); - static_cast(VarRec->Variable) - ->m_Engine = m_Engine; + VarRec->Variable = + VarSetup(m_Engine, VarRec->VarName, VarRec->Type, field_data); + static_cast(VarRec->Variable)->m_Engine = m_Engine; } VarByKey[VarRec->Variable] = VarRec; VarRec->LastTSAdded = Step; @@ -953,8 +910,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, } if (m_RandomAccessMode && (VarRec->LastTSAdded != Step)) { - static_cast(VarRec->Variable) - ->m_AvailableStepsCount++; + static_cast(VarRec->Variable)->m_AvailableStepsCount++; VarRec->LastTSAdded = Step; } } @@ -981,8 +937,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, if (RecPair.second->OrigShapeID == ShapeID::JoinedArray) { auto VarRec = RecPair.second; - VariableBase *Var = - static_cast(VarRec->Variable); + VariableBase *Var = static_cast(VarRec->Variable); for (size_t i = 0; i < VarRec->DimCount; i++) { Var->m_Shape[i] = VarRec->GlobalDims[i]; @@ -993,8 +948,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, } } -void BP5Deserializer::InstallAttributeData(void *AttributeBlock, - size_t BlockLen, size_t Step) +void BP5Deserializer::InstallAttributeData(void *AttributeBlock, size_t BlockLen, size_t Step) { static int DumpMetadata = -1; void *BaseData; @@ -1003,21 +957,19 @@ void BP5Deserializer::InstallAttributeData(void *AttributeBlock, if (BlockLen == 0) return; - FFSformat = - FFSTypeHandle_from_encode(ReaderFFSContext, (char *)AttributeBlock); + FFSformat = FFSTypeHandle_from_encode(ReaderFFSContext, (char *)AttributeBlock); if (!FFSformat) { - helper::Throw( - "Toolkit", "format::BP5Deserializer", "InstallAttributeData", - "Internal error or file corruption, no know " - "format for Attribute Block"); + helper::Throw("Toolkit", "format::BP5Deserializer", + "InstallAttributeData", + "Internal error or file corruption, no know " + "format for Attribute Block"); } if (!FFShas_conversion(FFSformat)) { FMContext FMC = FMContext_from_FFS(ReaderFFSContext); FMFormat Format = FMformat_from_ID(FMC, (char *)AttributeBlock); - FMStructDescList List = - FMcopy_struct_list(format_list_of_FMFormat(Format)); + FMStructDescList List = FMcopy_struct_list(format_list_of_FMFormat(Format)); // GSE - restrict to homogenous FTM FMlocalize_structs(List); establish_conversion(ReaderFFSContext, FFSformat, List); FMfree_struct_list(List); @@ -1029,13 +981,11 @@ void BP5Deserializer::InstallAttributeData(void *AttributeBlock, } else { - auto DecodedLength = FFS_est_decode_length( - ReaderFFSContext, (char *)AttributeBlock, BlockLen); + auto DecodedLength = + FFS_est_decode_length(ReaderFFSContext, (char *)AttributeBlock, BlockLen); BaseData = malloc(DecodedLength); - FFSBuffer decode_buf = - create_fixed_FFSBuffer((char *)BaseData, DecodedLength); - FFSdecode_to_buffer(ReaderFFSContext, (char *)AttributeBlock, - decode_buf); + FFSBuffer decode_buf = create_fixed_FFSBuffer((char *)BaseData, DecodedLength); + FFSdecode_to_buffer(ReaderFFSContext, (char *)AttributeBlock, decode_buf); } if (DumpMetadata == -1) { @@ -1043,18 +993,15 @@ void BP5Deserializer::InstallAttributeData(void *AttributeBlock, } if (DumpMetadata) { - printf("\nIncomingAttributeDatablock (Step %zu) is %p :\n", Step, - BaseData); + printf("\nIncomingAttributeDatablock (Step %zu) is %p :\n", Step, BaseData); FMdump_data(FMFormat_of_original(FFSformat), BaseData, 1024000); printf("\n\n"); } - if (strcmp(name_of_FMformat(FMFormat_of_original(FFSformat)), - "GenericAttributes") == 0) + if (strcmp(name_of_FMformat(FMFormat_of_original(FFSformat)), "GenericAttributes") == 0) { InstallAttributesV2(FFSformat, BaseData, Step); } - else if (strcmp(name_of_FMformat(FMFormat_of_original(FFSformat)), - "Attributes") == 0) + else if (strcmp(name_of_FMformat(FMFormat_of_original(FFSformat)), "Attributes") == 0) { InstallAttributesV1(FFSformat, BaseData, Step); } @@ -1067,8 +1014,7 @@ void BP5Deserializer::InstallAttributeData(void *AttributeBlock, } } -void BP5Deserializer::InstallAttributesV1(FFSTypeHandle FFSformat, - void *BaseData, size_t Step) +void BP5Deserializer::InstallAttributesV1(FFSTypeHandle FFSformat, void *BaseData, size_t Step) { FMFieldList FieldList; FMStructDescList FormatList; @@ -1089,30 +1035,27 @@ void BP5Deserializer::InstallAttributesV1(FFSTypeHandle FFSformat, { DataType Type; int ElemSize; - const char *FieldName = - BreakdownVarName(FieldList[i].field_name, &Type, &ElemSize); + const char *FieldName = BreakdownVarName(FieldList[i].field_name, &Type, &ElemSize); if (Type == adios2::DataType::Struct) { return; } else if (Type == helper::GetDataType()) { - m_Engine->m_IO.DefineAttribute( - FieldName, *(char **)field_data, "", "/", true); + m_Engine->m_IO.DefineAttribute(FieldName, *(char **)field_data, "", + "/", true); } -#define declare_type(T) \ - else if (Type == helper::GetDataType()) \ - { \ - m_Engine->m_IO.DefineAttribute(FieldName, *(T *)field_data, "", \ - "/", true); \ +#define declare_type(T) \ + else if (Type == helper::GetDataType()) \ + { \ + m_Engine->m_IO.DefineAttribute(FieldName, *(T *)field_data, "", "/", true); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type else { - std::cout << "Loading attribute matched no type " - << ToString(Type) << std::endl; + std::cout << "Loading attribute matched no type " << ToString(Type) << std::endl; } i++; } @@ -1125,8 +1068,7 @@ void BP5Deserializer::InstallAttributesV1(FFSTypeHandle FFSformat, char *FieldName = strdup(FieldList[i].field_name + 4); // skip BP5_ char *FieldType = strdup(FieldList[i].field_type); *strchr(FieldType, '[') = 0; - Type = (DataType)TranslateFFSType2ADIOS(FieldType, - FieldList[i].field_size); + Type = (DataType)TranslateFFSType2ADIOS(FieldType, FieldList[i].field_size); if (Type == adios2::DataType::Struct) { return; @@ -1140,23 +1082,21 @@ void BP5Deserializer::InstallAttributesV1(FFSTypeHandle FFSformat, { array[i].assign(str_array[i]); } - m_Engine->m_IO.DefineAttribute( - FieldName, array.data(), array.size(), "", "/", true); + m_Engine->m_IO.DefineAttribute(FieldName, array.data(), array.size(), + "", "/", true); } -#define declare_type(T) \ - else if (Type == helper::GetDataType()) \ - { \ - T **array = *(T ***)field_data; \ - m_Engine->m_IO.DefineAttribute(FieldName, (T *)array, ElemCount, \ - "", "/", true); \ +#define declare_type(T) \ + else if (Type == helper::GetDataType()) \ + { \ + T **array = *(T ***)field_data; \ + m_Engine->m_IO.DefineAttribute(FieldName, (T *)array, ElemCount, "", "/", true); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type else { - std::cout << "Loading attribute matched no type " - << ToString(Type) << std::endl; + std::cout << "Loading attribute matched no type " << ToString(Type) << std::endl; } free(FieldName); i++; @@ -1164,13 +1104,11 @@ void BP5Deserializer::InstallAttributesV1(FFSTypeHandle FFSformat, } } -void BP5Deserializer::InstallAttributesV2(FFSTypeHandle FFSformat, - void *BaseData, size_t Step) +void BP5Deserializer::InstallAttributesV2(FFSTypeHandle FFSformat, void *BaseData, size_t Step) { BP5AttrStruct *Attrs = (BP5AttrStruct *)BaseData; - auto lf_BreakdownTypeArray = [](const char *Name, DataType &Type, - bool &Array) { + auto lf_BreakdownTypeArray = [](const char *Name, DataType &Type, bool &Array) { Type = (DataType)(Name[0] - '0'); Array = false; if ((int)Type > 18) @@ -1193,21 +1131,19 @@ void BP5Deserializer::InstallAttributesV2(FFSTypeHandle FFSformat, { return; } -#define declare_type(T) \ - else if (Type == helper::GetDataType()) \ - { \ - m_Engine->m_IO.DefineAttribute(Name, (T *)ThisAttr->Values, \ - ThisAttr->TotalElementSize / \ - DataTypeSize[(int)Type], \ - "", "/", true); \ +#define declare_type(T) \ + else if (Type == helper::GetDataType()) \ + { \ + m_Engine->m_IO.DefineAttribute(Name, (T *)ThisAttr->Values, \ + ThisAttr->TotalElementSize / DataTypeSize[(int)Type], \ + "", "/", true); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type else { - std::cout << "Loading attribute matched no type " - << ToString(Type) << std::endl; + std::cout << "Loading attribute matched no type " << ToString(Type) << std::endl; } } else @@ -1216,19 +1152,17 @@ void BP5Deserializer::InstallAttributesV2(FFSTypeHandle FFSformat, { return; } -#define declare_type(T) \ - else if (Type == helper::GetDataType()) \ - { \ - m_Engine->m_IO.DefineAttribute(Name, *(T *)ThisAttr->Values, "", \ - "/", true); \ +#define declare_type(T) \ + else if (Type == helper::GetDataType()) \ + { \ + m_Engine->m_IO.DefineAttribute(Name, *(T *)ThisAttr->Values, "", "/", true); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type else { - std::cout << "Loading attribute matched no type " - << ToString(Type) << std::endl; + std::cout << "Loading attribute matched no type " << ToString(Type) << std::endl; } } } @@ -1248,13 +1182,12 @@ void BP5Deserializer::InstallAttributesV2(FFSTypeHandle FFSformat, { array[i].assign(str_array[i]); } - m_Engine->m_IO.DefineAttribute( - Name, array.data(), array.size(), "", "/", true); + m_Engine->m_IO.DefineAttribute(Name, array.data(), array.size(), "", "/", + true); } else { - m_Engine->m_IO.DefineAttribute( - Name, ThisAttr->Values[0], "", "/", true); + m_Engine->m_IO.DefineAttribute(Name, ThisAttr->Values[0], "", "/", true); } } } @@ -1271,19 +1204,15 @@ bool BP5Deserializer::QueueGet(core::VariableBase &variable, void *DestData) bool ret = false; if (variable.m_Type == adios2::DataType::Struct) { - StructQueueReadChecks( - dynamic_cast(&variable), VarRec); + StructQueueReadChecks(dynamic_cast(&variable), VarRec); } - if (variable.m_StepsStart + variable.m_StepsCount > - VarRec->AbsStepFromRel.size()) + if (variable.m_StepsStart + variable.m_StepsCount > VarRec->AbsStepFromRel.size()) { helper::Throw( "Toolkit", "format::BP5Deserializer", "QueueGet", - "offset " + std::to_string(variable.m_StepsCount) + - " from steps start " + - std::to_string(variable.m_StepsStart) + " in variable " + - variable.m_Name + + "offset " + std::to_string(variable.m_StepsCount) + " from steps start " + + std::to_string(variable.m_StepsStart) + " in variable " + variable.m_Name + " is beyond the largest available relative step = " + std::to_string(VarRec->AbsStepFromRel.size()) + ", check Variable SetStepSelection argument stepsCount " @@ -1295,15 +1224,13 @@ bool BP5Deserializer::QueueGet(core::VariableBase &variable, void *DestData) { const size_t AbsStep = VarRec->AbsStepFromRel[RelStep]; const size_t writerCohortSize = WriterCohortSize(AbsStep); - for (size_t WriterRank = 0; WriterRank < writerCohortSize; - WriterRank++) + for (size_t WriterRank = 0; WriterRank < writerCohortSize; WriterRank++) { if (GetMetadataBase(VarRec, AbsStep, WriterRank)) { // This writer wrote on this timestep ret = QueueGetSingle(variable, DestData, AbsStep); - size_t increment = - variable.TotalSize() * variable.m_ElementSize; + size_t increment = variable.TotalSize() * variable.m_ElementSize; DestData = (void *)((char *)DestData + increment); break; } @@ -1313,10 +1240,8 @@ bool BP5Deserializer::QueueGet(core::VariableBase &variable, void *DestData) } } -bool BP5Deserializer::GetSingleValueFromMetadata(core::VariableBase &variable, - BP5VarRec *VarRec, - void *DestData, size_t Step, - size_t WriterRank) +bool BP5Deserializer::GetSingleValueFromMetadata(core::VariableBase &variable, BP5VarRec *VarRec, + void *DestData, size_t Step, size_t WriterRank) { char *src = (char *)GetMetadataBase(VarRec, Step, WriterRank); @@ -1338,15 +1263,14 @@ bool BP5Deserializer::GetSingleValueFromMetadata(core::VariableBase &variable, return true; } -void BP5Deserializer::StructQueueReadChecks(core::VariableStruct *variable, - BP5VarRec *VarRec) +void BP5Deserializer::StructQueueReadChecks(core::VariableStruct *variable, BP5VarRec *VarRec) { auto EngineReadDef = VarRec->ReaderDef; // If there is no ReadDefinition, that's an error if (!variable->m_ReadStructDefinition) - helper::Throw( - "Toolkit", "format::BP5Deserializer", "QueueGet", - "ReadStructure not defined for variable " + variable->m_Name); + helper::Throw("Toolkit", "format::BP5Deserializer", "QueueGet", + "ReadStructure not defined for variable " + + variable->m_Name); // If there was a prior read def and the current is the same, that's fine if (variable->m_ReadStructDefinition == EngineReadDef) @@ -1354,10 +1278,10 @@ void BP5Deserializer::StructQueueReadChecks(core::VariableStruct *variable, // If there was a prior read definition and this one is different, throw if (EngineReadDef) - helper::Throw( - "Toolkit", "format::BP5Deserializer", "QueueGet", - "ReadStructure definition for variable " + variable->m_Name + - " changed from prior definition. Unsupported."); + helper::Throw("Toolkit", "format::BP5Deserializer", "QueueGet", + "ReadStructure definition for variable " + + variable->m_Name + + " changed from prior definition. Unsupported."); // Check to see if the read definition is compatible with the write // definition (and the engine can support the transformation) @@ -1366,14 +1290,12 @@ void BP5Deserializer::StructQueueReadChecks(core::VariableStruct *variable, VarRec->ReaderDef = variable->m_ReadStructDefinition; } -bool BP5Deserializer::QueueGetSingle(core::VariableBase &variable, - void *DestData, size_t Step) +bool BP5Deserializer::QueueGetSingle(core::VariableBase &variable, void *DestData, size_t Step) { BP5VarRec *VarRec = VarByKey[&variable]; if (variable.m_Type == adios2::DataType::Struct) { - StructQueueReadChecks(dynamic_cast(&variable), - VarRec); + StructQueueReadChecks(dynamic_cast(&variable), VarRec); } if (VarRec->OrigShapeID == ShapeID::GlobalValue) @@ -1381,8 +1303,7 @@ bool BP5Deserializer::QueueGetSingle(core::VariableBase &variable, const size_t writerCohortSize = WriterCohortSize(Step); for (size_t WriterRank = 0; WriterRank < writerCohortSize; WriterRank++) { - if (GetSingleValueFromMetadata(variable, VarRec, DestData, Step, - WriterRank)) + if (GetSingleValueFromMetadata(variable, VarRec, DestData, Step, WriterRank)) return false; } return false; @@ -1391,16 +1312,13 @@ bool BP5Deserializer::QueueGetSingle(core::VariableBase &variable, { // Shows up as global array with one element per writer rank for (size_t WriterRank = variable.m_Start[0]; - WriterRank < variable.m_Count[0] + variable.m_Start[0]; - WriterRank++) + WriterRank < variable.m_Count[0] + variable.m_Start[0]; WriterRank++) { - (void)GetSingleValueFromMetadata(variable, VarRec, DestData, Step, - WriterRank); - DestData = (char *)DestData + - variable.m_ElementSize; // use variable.m_ElementSize - // because it's the size in local - // memory, VarRec->ElementSize is - // the size in metadata + (void)GetSingleValueFromMetadata(variable, VarRec, DestData, Step, WriterRank); + DestData = (char *)DestData + variable.m_ElementSize; // use variable.m_ElementSize + // because it's the size in local + // memory, VarRec->ElementSize is + // the size in metadata } return false; } @@ -1445,9 +1363,8 @@ bool BP5Deserializer::QueueGetSingle(core::VariableBase &variable, return true; } -static bool IntersectionStartCount(const size_t dimensionsSize, - const size_t *start1, const size_t *count1, - const size_t *start2, const size_t *count2, +static bool IntersectionStartCount(const size_t dimensionsSize, const size_t *start1, + const size_t *count1, const size_t *start2, const size_t *count2, size_t *outstart, size_t *outcount) noexcept { for (size_t d = 0; d < dimensionsSize; ++d) @@ -1467,8 +1384,7 @@ static bool IntersectionStartCount(const size_t dimensionsSize, } for (size_t d = 0; d < dimensionsSize; d++) { - const size_t intersectionStart = - (start1[d] < start2[d]) ? start2[d] : start1[d]; + const size_t intersectionStart = (start1[d] < start2[d]) ? start2[d] : start1[d]; // end, must be inclusive const size_t end1 = start1[d] + count1[d] - 1; @@ -1484,8 +1400,8 @@ static bool IntersectionStartCount(const size_t dimensionsSize, return true; } -static size_t LinearIndex(const size_t dimensionsSize, const size_t *count, - const size_t *pos, bool IsRowMajor) noexcept +static size_t LinearIndex(const size_t dimensionsSize, const size_t *count, const size_t *pos, + bool IsRowMajor) noexcept { size_t offset = 0; if (IsRowMajor) @@ -1523,8 +1439,7 @@ static size_t CalcBlockLength(const size_t dimensionsSize, const size_t *count) * contiguous, but it should never return true when it is not * contiguous. */ -bool BP5Deserializer::IsContiguousTransfer(BP5ArrayRequest *Req, - size_t *offsets, size_t *count) +bool BP5Deserializer::IsContiguousTransfer(BP5ArrayRequest *Req, size_t *offsets, size_t *count) { /* * All 1 dimensional requests in ADIOS involve the transfer of @@ -1536,8 +1451,7 @@ bool BP5Deserializer::IsContiguousTransfer(BP5ArrayRequest *Req, } std::vector -BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, - size_t *maxReadSize) +BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, size_t *maxReadSize) { std::vector Ret; *maxReadSize = 0; @@ -1550,20 +1464,16 @@ BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, { const size_t writerCohortSize = WriterCohortSize(Req->Step); size_t NodeFirstBlock = 0; - for (size_t WriterRank = 0; WriterRank < writerCohortSize; - WriterRank++) + for (size_t WriterRank = 0; WriterRank < writerCohortSize; WriterRank++) { MetaArrayRecOperator *writer_meta_base = - (MetaArrayRecOperator *)GetMetadataBase( - Req->VarRec, Req->Step, WriterRank); + (MetaArrayRecOperator *)GetMetadataBase(Req->VarRec, Req->Step, WriterRank); if (!writer_meta_base) { continue; // Not writen on this step } - size_t NodeLastBlock = - NodeFirstBlock + writer_meta_base->BlockCount - 1; - if ((NodeFirstBlock <= Req->BlockID) && - (NodeLastBlock >= Req->BlockID)) + size_t NodeLastBlock = NodeFirstBlock + writer_meta_base->BlockCount - 1; + if ((NodeFirstBlock <= Req->BlockID) && (NodeLastBlock >= Req->BlockID)) { // block is here size_t NeededBlock = Req->BlockID - NodeFirstBlock; @@ -1571,18 +1481,16 @@ BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, ReadRequest RR; RR.Timestep = Req->Step; RR.WriterRank = WriterRank; - RR.StartOffset = - writer_meta_base->DataBlockLocation[NeededBlock]; + RR.StartOffset = writer_meta_base->DataBlockLocation[NeededBlock]; if (Req->MemSpace != MemorySpace::Host) RR.DirectToAppMemory = false; else - RR.DirectToAppMemory = IsContiguousTransfer( - Req, &writer_meta_base->Offsets[StartDim], - &writer_meta_base->Count[StartDim]); + RR.DirectToAppMemory = + IsContiguousTransfer(Req, &writer_meta_base->Offsets[StartDim], + &writer_meta_base->Count[StartDim]); RR.ReadLength = helper::GetDataTypeSize(Req->VarRec->Type) * - CalcBlockLength(Req->VarRec->DimCount, - &writer_meta_base->Count[StartDim]); + CalcBlockLength(Req->VarRec->DimCount, &writer_meta_base->Count[StartDim]); RR.OffsetInBlock = 0; if (RR.DirectToAppMemory) { @@ -1591,13 +1499,11 @@ BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, { RR.ReadLength = helper::GetDataTypeSize(Req->VarRec->Type) * - CalcBlockLength(Req->VarRec->DimCount, - Req->Count.data()); + CalcBlockLength(Req->VarRec->DimCount, Req->Count.data()); /* DirectToAppMemory handles only 1D, so offset calc * is 1D only for the moment */ RR.StartOffset += - helper::GetDataTypeSize(Req->VarRec->Type) * - Req->Start[0]; + helper::GetDataTypeSize(Req->VarRec->Type) * Req->Start[0]; } } else @@ -1608,8 +1514,7 @@ BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, RR.DestinationAddr = (char *)malloc(RR.ReadLength); } *maxReadSize = - (*maxReadSize < RR.ReadLength ? RR.ReadLength - : *maxReadSize); + (*maxReadSize < RR.ReadLength ? RR.ReadLength : *maxReadSize); } RR.ReqIndex = ReqIndex; RR.BlockID = NeededBlock; @@ -1623,29 +1528,25 @@ BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, { /* global case */ const size_t writerCohortSize = WriterCohortSize(Req->Step); - for (size_t WriterRank = 0; WriterRank < writerCohortSize; - WriterRank++) + for (size_t WriterRank = 0; WriterRank < writerCohortSize; WriterRank++) { MetaArrayRecOperator *writer_meta_base = - (MetaArrayRecOperator *)GetMetadataBase( - Req->VarRec, Req->Step, WriterRank); + (MetaArrayRecOperator *)GetMetadataBase(Req->VarRec, Req->Step, WriterRank); if (!writer_meta_base) continue; // Not writen on this step - for (size_t Block = 0; Block < writer_meta_base->BlockCount; - Block++) + for (size_t Block = 0; Block < writer_meta_base->BlockCount; Block++) { std::array intersectionstart; std::array intersectionend; std::array intersectioncount; size_t StartDim = Block * Req->VarRec->DimCount; - if (IntersectionStartCount( - Req->VarRec->DimCount, Req->Start.data(), - Req->Count.data(), - &writer_meta_base->Offsets[StartDim], - &writer_meta_base->Count[StartDim], - &intersectionstart[0], &intersectioncount[0])) + if (IntersectionStartCount(Req->VarRec->DimCount, Req->Start.data(), + Req->Count.data(), + &writer_meta_base->Offsets[StartDim], + &writer_meta_base->Count[StartDim], + &intersectionstart[0], &intersectioncount[0])) { if (Req->VarRec->Operator != NULL) { @@ -1653,19 +1554,15 @@ BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, ReadRequest RR; RR.Timestep = Req->Step; RR.WriterRank = WriterRank; - RR.StartOffset = - writer_meta_base->DataBlockLocation[Block]; - RR.ReadLength = - writer_meta_base->DataBlockSize[Block]; + RR.StartOffset = writer_meta_base->DataBlockLocation[Block]; + RR.ReadLength = writer_meta_base->DataBlockSize[Block]; RR.DestinationAddr = nullptr; if (doAllocTempBuffers) { - RR.DestinationAddr = - (char *)malloc(RR.ReadLength); + RR.DestinationAddr = (char *)malloc(RR.ReadLength); } *maxReadSize = - (*maxReadSize < RR.ReadLength ? RR.ReadLength - : *maxReadSize); + (*maxReadSize < RR.ReadLength ? RR.ReadLength : *maxReadSize); RR.DirectToAppMemory = false; RR.ReqIndex = ReqIndex; RR.BlockID = Block; @@ -1674,46 +1571,38 @@ BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, } else { - for (size_t Dim = 0; Dim < Req->VarRec->DimCount; - Dim++) + for (size_t Dim = 0; Dim < Req->VarRec->DimCount; Dim++) { - intersectionstart[Dim] -= - writer_meta_base->Offsets[StartDim + Dim]; + intersectionstart[Dim] -= writer_meta_base->Offsets[StartDim + Dim]; } size_t StartOffsetInBlock = - VB->m_ElementSize * - LinearIndex(Req->VarRec->DimCount, - &writer_meta_base->Count[StartDim], - &intersectionstart[0], - m_ReaderIsRowMajor); - for (size_t Dim = 0; Dim < Req->VarRec->DimCount; - Dim++) + VB->m_ElementSize * LinearIndex(Req->VarRec->DimCount, + &writer_meta_base->Count[StartDim], + &intersectionstart[0], + m_ReaderIsRowMajor); + for (size_t Dim = 0; Dim < Req->VarRec->DimCount; Dim++) { - intersectionend[Dim] = intersectionstart[Dim] + - intersectioncount[Dim] - - 1; + intersectionend[Dim] = + intersectionstart[Dim] + intersectioncount[Dim] - 1; } size_t EndOffsetInBlock = VB->m_ElementSize * (LinearIndex(Req->VarRec->DimCount, &writer_meta_base->Count[StartDim], - &intersectionend[0], - m_ReaderIsRowMajor) + + &intersectionend[0], m_ReaderIsRowMajor) + 1); ReadRequest RR; RR.Timestep = Req->Step; RR.WriterRank = WriterRank; RR.StartOffset = - writer_meta_base->DataBlockLocation[Block] + - StartOffsetInBlock; - RR.ReadLength = - EndOffsetInBlock - StartOffsetInBlock; + writer_meta_base->DataBlockLocation[Block] + StartOffsetInBlock; + RR.ReadLength = EndOffsetInBlock - StartOffsetInBlock; if (Req->MemSpace != MemorySpace::Host) RR.DirectToAppMemory = false; else - RR.DirectToAppMemory = IsContiguousTransfer( - Req, &writer_meta_base->Offsets[StartDim], - &writer_meta_base->Count[StartDim]); + RR.DirectToAppMemory = + IsContiguousTransfer(Req, &writer_meta_base->Offsets[StartDim], + &writer_meta_base->Count[StartDim]); if (RR.DirectToAppMemory) { /* @@ -1725,25 +1614,21 @@ BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, */ ssize_t ContigOffset = - (writer_meta_base->Offsets[StartDim + 0] - - Req->Start[0]) * + (writer_meta_base->Offsets[StartDim + 0] - Req->Start[0]) * VB->m_ElementSize; if (ContigOffset < 0) ContigOffset = 0; - RR.DestinationAddr = - (char *)Req->Data + ContigOffset; + RR.DestinationAddr = (char *)Req->Data + ContigOffset; } else { RR.DestinationAddr = nullptr; if (doAllocTempBuffers) { - RR.DestinationAddr = - (char *)malloc(RR.ReadLength); + RR.DestinationAddr = (char *)malloc(RR.ReadLength); } - *maxReadSize = (*maxReadSize < RR.ReadLength - ? RR.ReadLength - : *maxReadSize); + *maxReadSize = + (*maxReadSize < RR.ReadLength ? RR.ReadLength : *maxReadSize); } RR.OffsetInBlock = StartOffsetInBlock; RR.ReqIndex = ReqIndex; @@ -1787,17 +1672,15 @@ void BP5Deserializer::FinalizeGet(const ReadRequest &Read, const bool freeAddr) size_t DestSize = Req.VarRec->ElementSize; for (size_t dim = 0; dim < Req.VarRec->DimCount; dim++) { - DestSize *= - writer_meta_base - ->Count[dim + Read.BlockID * writer_meta_base->Dims]; + DestSize *= writer_meta_base->Count[dim + Read.BlockID * writer_meta_base->Dims]; } decompressBuffer.resize(DestSize); { std::lock_guard lockGuard(mutexDecompress); - core::Decompress(IncomingData, - ((MetaArrayRecOperator *)writer_meta_base) - ->DataBlockSize[Read.BlockID], - decompressBuffer.data(), Req.MemSpace); + core::Decompress( + IncomingData, + ((MetaArrayRecOperator *)writer_meta_base)->DataBlockSize[Read.BlockID], + decompressBuffer.data(), Req.MemSpace); } IncomingData = decompressBuffer.data(); VirtualIncomingData = IncomingData; @@ -1850,30 +1733,26 @@ void BP5Deserializer::FinalizeGet(const ReadRequest &Read, const bool freeAddr) #ifdef NOTDEF // haven't done endinness for BP5 if (endianReverse) { - helper::Throw( - "Toolkit", "format::bp::BP5Deserializer", "PostDataRead", - "endianReverse " - "not supported with MemorySelection"); + helper::Throw("Toolkit", "format::bp::BP5Deserializer", + "PostDataRead", + "endianReverse " + "not supported with MemorySelection"); } if (m_ReaderIsRowMajor) { - helper::Throw( - "Toolkit", "format::bp::BP5Deserializer", "PostDataRead", - "ReverseDimensions not supported with " - "MemorySelection"); + helper::Throw("Toolkit", "format::bp::BP5Deserializer", + "PostDataRead", + "ReverseDimensions not supported with " + "MemorySelection"); } #endif - const Box selectionBox = - helper::StartEndBox(Dims(outStart.begin(), outStart.end()), - Dims(outCount.begin(), outCount.end())); - const Box BlockBox = - helper::StartEndBox(Dims(inStart.begin(), inStart.end()), - Dims(inCount.begin(), inCount.end())); - const Box IntersectionBox = - helper::IntersectionBox(selectionBox, BlockBox); - VirtualIncomingData = - Read.DestinationAddr; // Don't do the fake offset thing + const Box selectionBox = helper::StartEndBox(Dims(outStart.begin(), outStart.end()), + Dims(outCount.begin(), outCount.end())); + const Box BlockBox = helper::StartEndBox(Dims(inStart.begin(), inStart.end()), + Dims(inCount.begin(), inCount.end())); + const Box IntersectionBox = helper::IntersectionBox(selectionBox, BlockBox); + VirtualIncomingData = Read.DestinationAddr; // Don't do the fake offset thing helper::DimsArray intersectStart(IntersectionBox.first); helper::DimsArray intersectCount(IntersectionBox.second); helper::DimsArray blockStart(BlockBox.first); @@ -1889,17 +1768,15 @@ void BP5Deserializer::FinalizeGet(const ReadRequest &Read, const bool freeAddr) intersectStart[d] += VB->m_MemoryStart[d]; blockStart[d] += VB->m_MemoryStart[d]; } - helper::NdCopy(VirtualIncomingData, intersectStart, intersectCount, - true, true, (char *)Req.Data, intersectStart, - intersectCount, true, true, ElementSize, intersectStart, - blockCount, memoryStart, memoryCount, false); + helper::NdCopy(VirtualIncomingData, intersectStart, intersectCount, true, true, + (char *)Req.Data, intersectStart, intersectCount, true, true, ElementSize, + intersectStart, blockCount, memoryStart, memoryCount, false); } else { - helper::NdCopy(VirtualIncomingData, inStart, inCount, true, true, - (char *)Req.Data, outStart, outCount, true, true, - ElementSize, CoreDims(), CoreDims(), CoreDims(), - CoreDims(), false, Req.MemSpace); + helper::NdCopy(VirtualIncomingData, inStart, inCount, true, true, (char *)Req.Data, + outStart, outCount, true, true, ElementSize, CoreDims(), CoreDims(), + CoreDims(), CoreDims(), false, Req.MemSpace); } if (freeAddr) { @@ -1916,10 +1793,8 @@ void BP5Deserializer::FinalizeGets(std::vector &Reads) PendingRequests.clear(); } -void BP5Deserializer::MapGlobalToLocalIndex(size_t Dims, - const size_t *GlobalIndex, - const size_t *LocalOffsets, - size_t *LocalIndex) +void BP5Deserializer::MapGlobalToLocalIndex(size_t Dims, const size_t *GlobalIndex, + const size_t *LocalOffsets, size_t *LocalIndex) { for (size_t i = 0; i < Dims; i++) { @@ -1927,8 +1802,7 @@ void BP5Deserializer::MapGlobalToLocalIndex(size_t Dims, } } -int BP5Deserializer::FindOffset(size_t Dims, const size_t *Size, - const size_t *Index) +int BP5Deserializer::FindOffset(size_t Dims, const size_t *Size, const size_t *Index) { int Offset = 0; for (size_t i = 0; i < Dims; i++) @@ -2018,19 +1892,16 @@ BP5Deserializer::~BP5Deserializer() } } -void *BP5Deserializer::GetMetadataBase(BP5VarRec *VarRec, size_t Step, - size_t WriterRank) const +void *BP5Deserializer::GetMetadataBase(BP5VarRec *VarRec, size_t Step, size_t WriterRank) const { MetaArrayRec *writer_meta_base = NULL; if (m_RandomAccessMode) { - if (Step >= m_ControlArray.size() || - WriterRank >= m_ControlArray[Step].size()) + if (Step >= m_ControlArray.size() || WriterRank >= m_ControlArray[Step].size()) { return NULL; // we don't have this rank in this step } - ControlInfo *CI = - m_ControlArray[Step][WriterRank]; // writer control array + ControlInfo *CI = m_ControlArray[Step][WriterRank]; // writer control array if (((*CI->MetaFieldOffset).size() <= VarRec->VarNum) || ((*CI->MetaFieldOffset)[VarRec->VarNum] == 0)) { @@ -2046,9 +1917,8 @@ void *BP5Deserializer::GetMetadataBase(BP5VarRec *VarRec, size_t Step, return NULL; } size_t MetadataFieldOffset = (*CI->MetaFieldOffset)[VarRec->VarNum]; - writer_meta_base = - (MetaArrayRec *)(((char *)(*MetadataBaseArray[Step])[WriterRank]) + - MetadataFieldOffset); + writer_meta_base = (MetaArrayRec *)(((char *)(*MetadataBaseArray[Step])[WriterRank]) + + MetadataFieldOffset); } else { @@ -2057,9 +1927,8 @@ void *BP5Deserializer::GetMetadataBase(BP5VarRec *VarRec, size_t Step, // Writer didn't write this var return NULL; } - writer_meta_base = - (MetaArrayRec *)(((char *)(*m_MetadataBaseAddrs)[WriterRank]) + - VarRec->PerWriterMetaFieldOffset[WriterRank]); + writer_meta_base = (MetaArrayRec *)(((char *)(*m_MetadataBaseAddrs)[WriterRank]) + + VarRec->PerWriterMetaFieldOffset[WriterRank]); } return writer_meta_base; } @@ -2075,8 +1944,7 @@ MinVarInfo *BP5Deserializer::MinBlocksInfo(const VariableBase &Var, size_t Step) MV->Step = Step; MV->Dims = (int)VarRec->DimCount; MV->Shape = NULL; - MV->IsReverseDims = - ((MV->Dims > 1) && (m_WriterIsRowMajor != m_ReaderIsRowMajor)); + MV->IsReverseDims = ((MV->Dims > 1) && (m_WriterIsRowMajor != m_ReaderIsRowMajor)); MV->WasLocalValue = (VarRec->OrigShapeID == ShapeID::LocalValue); if ((VarRec->OrigShapeID == ShapeID::LocalValue) || @@ -2115,8 +1983,7 @@ MinVarInfo *BP5Deserializer::MinBlocksInfo(const VariableBase &Var, size_t Step) } if (writer_meta_base) { - ApplyElementMinMax(Blk.MinMax, VarRec->Type, - writer_meta_base); + ApplyElementMinMax(Blk.MinMax, VarRec->Type, writer_meta_base); } MV->BlocksInfo.push_back(Blk); } @@ -2125,8 +1992,7 @@ MinVarInfo *BP5Deserializer::MinBlocksInfo(const VariableBase &Var, size_t Step) } for (size_t WriterRank = 0; WriterRank < writerCohortSize; WriterRank++) { - MetaArrayRec *writer_meta_base = - (MetaArrayRec *)GetMetadataBase(VarRec, Step, WriterRank); + MetaArrayRec *writer_meta_base = (MetaArrayRec *)GetMetadataBase(VarRec, Step, WriterRank); if (writer_meta_base) { if (MV->Shape == NULL) @@ -2134,9 +2000,7 @@ MinVarInfo *BP5Deserializer::MinBlocksInfo(const VariableBase &Var, size_t Step) MV->Shape = writer_meta_base->Shape; } size_t WriterBlockCount = - writer_meta_base->Dims - ? writer_meta_base->DBCount / writer_meta_base->Dims - : 1; + writer_meta_base->Dims ? writer_meta_base->DBCount / writer_meta_base->Dims : 1; Id += WriterBlockCount; } } @@ -2145,18 +2009,15 @@ MinVarInfo *BP5Deserializer::MinBlocksInfo(const VariableBase &Var, size_t Step) Id = 0; for (size_t WriterRank = 0; WriterRank < writerCohortSize; WriterRank++) { - MetaArrayRec *writer_meta_base = - (MetaArrayRec *)GetMetadataBase(VarRec, Step, WriterRank); + MetaArrayRec *writer_meta_base = (MetaArrayRec *)GetMetadataBase(VarRec, Step, WriterRank); if (!writer_meta_base) continue; - size_t WriterBlockCount = - MV->Dims ? writer_meta_base->DBCount / MV->Dims : 1; + size_t WriterBlockCount = MV->Dims ? writer_meta_base->DBCount / MV->Dims : 1; MinMaxStruct *MMs = NULL; if (VarRec->MinMaxOffset != SIZE_MAX) { - MMs = *(MinMaxStruct **)(((char *)writer_meta_base) + - VarRec->MinMaxOffset); + MMs = *(MinMaxStruct **)(((char *)writer_meta_base) + VarRec->MinMaxOffset); } for (size_t i = 0; i < WriterBlockCount; i++) { @@ -2175,14 +2036,10 @@ MinVarInfo *BP5Deserializer::MinBlocksInfo(const VariableBase &Var, size_t Step) if (MMs) { - char *BlockMinAddr = - (((char *)MMs) + 2 * i * VarRec->ElementSize); - char *BlockMaxAddr = - (((char *)MMs) + (2 * i + 1) * VarRec->ElementSize); - ApplyElementMinMax(Blk.MinMax, VarRec->Type, - (void *)BlockMinAddr); - ApplyElementMinMax(Blk.MinMax, VarRec->Type, - (void *)BlockMaxAddr); + char *BlockMinAddr = (((char *)MMs) + 2 * i * VarRec->ElementSize); + char *BlockMaxAddr = (((char *)MMs) + (2 * i + 1) * VarRec->ElementSize); + ApplyElementMinMax(Blk.MinMax, VarRec->Type, (void *)BlockMinAddr); + ApplyElementMinMax(Blk.MinMax, VarRec->Type, (void *)BlockMaxAddr); } // Blk.BufferP MV->BlocksInfo.push_back(Blk); @@ -2191,8 +2048,7 @@ MinVarInfo *BP5Deserializer::MinBlocksInfo(const VariableBase &Var, size_t Step) return MV; } -static void ApplyElementMinMax(MinMaxStruct &MinMax, DataType Type, - void *Element) +static void ApplyElementMinMax(MinMaxStruct &MinMax, DataType Type, void *Element) { switch (Type) { @@ -2273,8 +2129,7 @@ static void ApplyElementMinMax(MinMaxStruct &MinMax, DataType Type, } } -size_t BP5Deserializer::RelativeToAbsoluteStep(const BP5VarRec *VarRec, - size_t RelStep) +size_t BP5Deserializer::RelativeToAbsoluteStep(const BP5VarRec *VarRec, size_t RelStep) { // Consider an optimization here. Track the number of timesteps // available to the engine and the number of steps upon which a @@ -2292,10 +2147,8 @@ size_t BP5Deserializer::RelativeToAbsoluteStep(const BP5VarRec *VarRec, while (WriterRank < writerCohortSize) { BP5MetadataInfoStruct *BaseData; - BaseData = (BP5MetadataInfoStruct - *)(*MetadataBaseArray[AbsStep])[WriterRank]; - if (BP5BitfieldTest((BP5MetadataInfoStruct *)BaseData, - (int)VarRec->VarNum)) + BaseData = (BP5MetadataInfoStruct *)(*MetadataBaseArray[AbsStep])[WriterRank]; + if (BP5BitfieldTest((BP5MetadataInfoStruct *)BaseData, (int)VarRec->VarNum)) { // variable appeared on this step RelStep--; @@ -2308,8 +2161,7 @@ size_t BP5Deserializer::RelativeToAbsoluteStep(const BP5VarRec *VarRec, return AbsStep; } -void BP5Deserializer::GetAbsoluteSteps(const VariableBase &Var, - std::vector &keys) const +void BP5Deserializer::GetAbsoluteSteps(const VariableBase &Var, std::vector &keys) const { BP5VarRec *VarRec = LookupVarByKey((void *)&Var); if (!m_RandomAccessMode) @@ -2317,8 +2169,7 @@ void BP5Deserializer::GetAbsoluteSteps(const VariableBase &Var, for (size_t Step = 0; Step < m_ControlArray.size(); Step++) { - for (size_t WriterRank = 0; WriterRank < WriterCohortSize(Step); - WriterRank++) + for (size_t WriterRank = 0; WriterRank < WriterCohortSize(Step); WriterRank++) { MetaArrayRec *writer_meta_base = (MetaArrayRec *)GetMetadataBase(VarRec, Step, WriterRank); @@ -2331,8 +2182,7 @@ void BP5Deserializer::GetAbsoluteSteps(const VariableBase &Var, } } -bool BP5Deserializer::VarShape(const VariableBase &Var, const size_t RelStep, - Dims &Shape) const +bool BP5Deserializer::VarShape(const VariableBase &Var, const size_t RelStep, Dims &Shape) const { BP5VarRec *VarRec = LookupVarByKey((void *)&Var); if (!((VarRec->OrigShapeID == ShapeID::GlobalArray) || @@ -2352,8 +2202,7 @@ bool BP5Deserializer::VarShape(const VariableBase &Var, const size_t RelStep, AbsStep = VarRec->AbsStepFromRel[RelStep]; } } - for (size_t WriterRank = 0; WriterRank < WriterCohortSize(AbsStep); - WriterRank++) + for (size_t WriterRank = 0; WriterRank < WriterCohortSize(AbsStep); WriterRank++) { MetaArrayRec *writer_meta_base = (MetaArrayRec *)GetMetadataBase(VarRec, AbsStep, WriterRank); @@ -2402,30 +2251,22 @@ bool BP5Deserializer::VariableMinMax(const VariableBase &Var, const size_t Step, (VarRec->OrigShapeID == ShapeID::JoinedArray) || (VarRec->OrigShapeID == ShapeID::GlobalArray)) { - for (size_t WriterRank = 0; WriterRank < writerCohortSize; - WriterRank++) + for (size_t WriterRank = 0; WriterRank < writerCohortSize; WriterRank++) { MetaArrayRec *writer_meta_base = - (MetaArrayRec *)GetMetadataBase(VarRec, RelStep, - WriterRank); + (MetaArrayRec *)GetMetadataBase(VarRec, RelStep, WriterRank); if (!writer_meta_base) continue; size_t WriterBlockCount = - VarRec->DimCount - ? writer_meta_base->DBCount / VarRec->DimCount - : 1; + VarRec->DimCount ? writer_meta_base->DBCount / VarRec->DimCount : 1; for (size_t B = 0; B < WriterBlockCount; B++) { - void *MMs = *(void **)(((char *)writer_meta_base) + - VarRec->MinMaxOffset); - ApplyElementMinMax( - MinMax, VarRec->Type, - (void *)(((char *)MMs) + 2 * B * Var.m_ElementSize)); - ApplyElementMinMax( - MinMax, VarRec->Type, - (void *)(((char *)MMs) + - (2 * B + 1) * Var.m_ElementSize)); + void *MMs = *(void **)(((char *)writer_meta_base) + VarRec->MinMaxOffset); + ApplyElementMinMax(MinMax, VarRec->Type, + (void *)(((char *)MMs) + 2 * B * Var.m_ElementSize)); + ApplyElementMinMax(MinMax, VarRec->Type, + (void *)(((char *)MMs) + (2 * B + 1) * Var.m_ElementSize)); } } } @@ -2433,11 +2274,9 @@ bool BP5Deserializer::VariableMinMax(const VariableBase &Var, const size_t Step, { void *writer_meta_base = NULL; size_t WriterRank = 0; - while ((writer_meta_base == NULL) && - (WriterRank < writerCohortSize)) + while ((writer_meta_base == NULL) && (WriterRank < writerCohortSize)) { - writer_meta_base = - GetMetadataBase(VarRec, RelStep, WriterRank++); + writer_meta_base = GetMetadataBase(VarRec, RelStep, WriterRank++); } if (writer_meta_base) { @@ -2446,11 +2285,9 @@ bool BP5Deserializer::VariableMinMax(const VariableBase &Var, const size_t Step, } else if (VarRec->OrigShapeID == ShapeID::LocalValue) { - for (size_t WriterRank = 0; WriterRank < writerCohortSize; - WriterRank++) + for (size_t WriterRank = 0; WriterRank < writerCohortSize; WriterRank++) { - void *writer_meta_base = - GetMetadataBase(VarRec, RelStep, WriterRank); + void *writer_meta_base = GetMetadataBase(VarRec, RelStep, WriterRank); if (writer_meta_base) { ApplyElementMinMax(MinMax, VarRec->Type, writer_meta_base); diff --git a/source/adios2/toolkit/format/bp5/BP5Deserializer.h b/source/adios2/toolkit/format/bp5/BP5Deserializer.h index d1c932dc79..aa5de66802 100644 --- a/source/adios2/toolkit/format/bp5/BP5Deserializer.h +++ b/source/adios2/toolkit/format/bp5/BP5Deserializer.h @@ -35,8 +35,7 @@ class BP5Deserializer : virtual public BP5Base { public: - BP5Deserializer(bool WriterIsRowMajor, bool ReaderIsRowMajor, - bool RandomAccessMode = false); + BP5Deserializer(bool WriterIsRowMajor, bool ReaderIsRowMajor, bool RandomAccessMode = false); ~BP5Deserializer(); @@ -53,20 +52,16 @@ class BP5Deserializer : virtual public BP5Base size_t BlockID; }; void InstallMetaMetaData(MetaMetaInfoBlock &MMList); - void InstallMetaData(void *MetadataBlock, size_t BlockLen, - size_t WriterRank, size_t Step = SIZE_MAX); - void InstallAttributeData(void *AttributeBlock, size_t BlockLen, - size_t Step = SIZE_MAX); - void InstallAttributesV1(FFSTypeHandle FFSformat, void *BaseData, - size_t Step); - void InstallAttributesV2(FFSTypeHandle FFSformat, void *BaseData, - size_t Step); + void InstallMetaData(void *MetadataBlock, size_t BlockLen, size_t WriterRank, + size_t Step = SIZE_MAX); + void InstallAttributeData(void *AttributeBlock, size_t BlockLen, size_t Step = SIZE_MAX); + void InstallAttributesV1(FFSTypeHandle FFSformat, void *BaseData, size_t Step); + void InstallAttributesV2(FFSTypeHandle FFSformat, void *BaseData, size_t Step); void SetupForStep(size_t Step, size_t WriterCount); // return from QueueGet is true if a sync is needed to fill the data bool QueueGet(core::VariableBase &variable, void *DestData); - bool QueueGetSingle(core::VariableBase &variable, void *DestData, - size_t Step); + bool QueueGetSingle(core::VariableBase &variable, void *DestData, size_t Step); /* generate read requests. return vector of requests AND the size of * the largest allocation block necessary for reading. @@ -85,10 +80,8 @@ class BP5Deserializer : virtual public BP5Base MinVarInfo *AllStepsMinBlocksInfo(const VariableBase &var); MinVarInfo *MinBlocksInfo(const VariableBase &Var, const size_t Step); bool VarShape(const VariableBase &, const size_t Step, Dims &Shape) const; - bool VariableMinMax(const VariableBase &var, const size_t Step, - MinMaxStruct &MinMax); - void GetAbsoluteSteps(const VariableBase &variable, - std::vector &keys) const; + bool VariableMinMax(const VariableBase &var, const size_t Step, MinMaxStruct &MinMax); + void GetAbsoluteSteps(const VariableBase &variable, std::vector &keys) const; const bool m_WriterIsRowMajor; const bool m_ReaderIsRowMajor; @@ -196,32 +189,23 @@ class BP5Deserializer : virtual public BP5Base BP5VarRec *LookupVarByName(const char *Name); BP5VarRec *CreateVarRec(const char *ArrayName); void ReverseDimensions(size_t *Dimensions, size_t count, size_t times); - const char *BreakdownVarName(const char *Name, DataType *type_p, - int *element_size_p); - void BreakdownFieldType(const char *FieldType, bool &Operator, - bool &MinMax); - void BreakdownArrayName(const char *Name, char **base_name_p, - DataType *type_p, int *element_size_p, - FMFormat *Format); - void BreakdownV1ArrayName(const char *Name, char **base_name_p, - DataType *type_p, int *element_size_p, - bool &Operator, bool &MinMax); - void *VarSetup(core::Engine *engine, const char *variableName, - const DataType type, void *data); - void *ArrayVarSetup(core::Engine *engine, const char *variableName, - const DataType type, int DimCount, size_t *Shape, - size_t *Start, size_t *Count, - core::StructDefinition *Def, - core::StructDefinition *ReaderDef); - void MapGlobalToLocalIndex(size_t Dims, const size_t *GlobalIndex, - const size_t *LocalOffsets, size_t *LocalIndex); + const char *BreakdownVarName(const char *Name, DataType *type_p, int *element_size_p); + void BreakdownFieldType(const char *FieldType, bool &Operator, bool &MinMax); + void BreakdownArrayName(const char *Name, char **base_name_p, DataType *type_p, + int *element_size_p, FMFormat *Format); + void BreakdownV1ArrayName(const char *Name, char **base_name_p, DataType *type_p, + int *element_size_p, bool &Operator, bool &MinMax); + void *VarSetup(core::Engine *engine, const char *variableName, const DataType type, void *data); + void *ArrayVarSetup(core::Engine *engine, const char *variableName, const DataType type, + int DimCount, size_t *Shape, size_t *Start, size_t *Count, + core::StructDefinition *Def, core::StructDefinition *ReaderDef); + void MapGlobalToLocalIndex(size_t Dims, const size_t *GlobalIndex, const size_t *LocalOffsets, + size_t *LocalIndex); size_t RelativeToAbsoluteStep(const BP5VarRec *VarRec, size_t RelStep); int FindOffset(size_t Dims, const size_t *Size, const size_t *Index); - bool GetSingleValueFromMetadata(core::VariableBase &variable, - BP5VarRec *VarRec, void *DestData, + bool GetSingleValueFromMetadata(core::VariableBase &variable, BP5VarRec *VarRec, void *DestData, size_t Step, size_t WriterRank); - void StructQueueReadChecks(core::VariableStruct *variable, - BP5VarRec *VarRec); + void StructQueueReadChecks(core::VariableStruct *variable, BP5VarRec *VarRec); enum RequestTypeEnum { @@ -241,10 +225,8 @@ class BP5Deserializer : virtual public BP5Base void *Data; }; std::vector PendingRequests; - void *GetMetadataBase(BP5VarRec *VarRec, size_t Step, - size_t WriterRank) const; - bool IsContiguousTransfer(BP5ArrayRequest *Req, size_t *offsets, - size_t *count); + void *GetMetadataBase(BP5VarRec *VarRec, size_t Step, size_t WriterRank) const; + bool IsContiguousTransfer(BP5ArrayRequest *Req, size_t *offsets, size_t *count); size_t CurTimestep = 0; diff --git a/source/adios2/toolkit/format/bp5/BP5Serializer.cpp b/source/adios2/toolkit/format/bp5/BP5Serializer.cpp index d5ce49b81c..aad15ae794 100644 --- a/source/adios2/toolkit/format/bp5/BP5Serializer.cpp +++ b/source/adios2/toolkit/format/bp5/BP5Serializer.cpp @@ -68,17 +68,16 @@ void BP5Serializer::Init() Info.MetaFieldCount = 0; Info.MetaFields = NULL; Info.LocalFMContext = create_local_FMcontext(); - AddSimpleField(&Info.MetaFields, &Info.MetaFieldCount, "BitFieldCount", - "integer", sizeof(size_t)); - AddSimpleField(&Info.MetaFields, &Info.MetaFieldCount, "BitField", - "integer[BitFieldCount]", sizeof(size_t)); - AddSimpleField(&Info.MetaFields, &Info.MetaFieldCount, "DataBlockSize", - "integer", sizeof(size_t)); + AddSimpleField(&Info.MetaFields, &Info.MetaFieldCount, "BitFieldCount", "integer", + sizeof(size_t)); + AddSimpleField(&Info.MetaFields, &Info.MetaFieldCount, "BitField", "integer[BitFieldCount]", + sizeof(size_t)); + AddSimpleField(&Info.MetaFields, &Info.MetaFieldCount, "DataBlockSize", "integer", + sizeof(size_t)); RecalcMarshalStorageSize(); ((BP5MetadataInfoStruct *)MetadataBuf)->BitFieldCount = 0; - ((BP5MetadataInfoStruct *)MetadataBuf)->BitField = - (std::size_t *)malloc(sizeof(size_t)); + ((BP5MetadataInfoStruct *)MetadataBuf)->BitField = (std::size_t *)malloc(sizeof(size_t)); ((BP5MetadataInfoStruct *)MetadataBuf)->DataBlockSize = 0; } BP5Serializer::BP5WriterRec BP5Serializer::LookupWriterRec(void *Key) @@ -101,11 +100,9 @@ void BP5Serializer::RecalcMarshalStorageSize() FMFieldList LastMetaField; size_t NewMetaSize; LastMetaField = &Info.MetaFields[Info.MetaFieldCount - 1]; - NewMetaSize = - (LastMetaField->field_offset + LastMetaField->field_size + 7) & ~7; + NewMetaSize = (LastMetaField->field_offset + LastMetaField->field_size + 7) & ~7; MetadataBuf = realloc(MetadataBuf, NewMetaSize + 8); - memset((char *)(MetadataBuf) + MetadataSize, 0, - NewMetaSize - MetadataSize); + memset((char *)(MetadataBuf) + MetadataSize, 0, NewMetaSize - MetadataSize); MetadataSize = NewMetaSize; } } @@ -116,11 +113,9 @@ void BP5Serializer::RecalcAttributeStorageSize() { FMFieldList LastAttributeField; size_t NewAttributeSize; - LastAttributeField = - &Info.AttributeFields[Info.AttributeFieldCount - 1]; - NewAttributeSize = (LastAttributeField->field_offset + - LastAttributeField->field_size + 7) & - ~7; + LastAttributeField = &Info.AttributeFields[Info.AttributeFieldCount - 1]; + NewAttributeSize = + (LastAttributeField->field_offset + LastAttributeField->field_size + 7) & ~7; Info.AttributeData = realloc(Info.AttributeData, NewAttributeSize + 8); memset((char *)(Info.AttributeData) + Info.AttributeSize, 0, NewAttributeSize - Info.AttributeSize); @@ -128,9 +123,8 @@ void BP5Serializer::RecalcAttributeStorageSize() } } -void BP5Serializer::AddSimpleField(FMFieldList *FieldP, int *CountP, - const char *Name, const char *Type, - int ElementSize) +void BP5Serializer::AddSimpleField(FMFieldList *FieldP, int *CountP, const char *Name, + const char *Type, int ElementSize) { int Offset = 0; FMFieldList Field; @@ -144,14 +138,11 @@ void BP5Serializer::AddSimpleField(FMFieldList *FieldP, int *CountP, // really a pointer PriorFieldSize = sizeof(void *); } - Offset = - ((PriorField->field_offset + PriorFieldSize + ElementSize - 1) / - ElementSize) * - ElementSize; + Offset = ((PriorField->field_offset + PriorFieldSize + ElementSize - 1) / ElementSize) * + ElementSize; } if (*FieldP) - *FieldP = - (FMFieldList)realloc(*FieldP, (*CountP + 2) * sizeof((*FieldP)[0])); + *FieldP = (FMFieldList)realloc(*FieldP, (*CountP + 2) * sizeof((*FieldP)[0])); else *FieldP = (FMFieldList)malloc((*CountP + 2) * sizeof((*FieldP)[0])); @@ -226,8 +217,8 @@ static char *ConcatName(const char *base_name, const char *postfix) return Ret; } -char *BP5Serializer::BuildVarName(const char *base_name, const ShapeID Shape, - const int type, const int element_size) +char *BP5Serializer::BuildVarName(const char *base_name, const ShapeID Shape, const int type, + const int element_size) { const char *Prefix = NamePrefix(Shape); @@ -247,9 +238,8 @@ char *BP5Serializer::BuildVarName(const char *base_name, const ShapeID Shape, return Ret; } -static char *BuildLongName(const char *base_name, const ShapeID Shape, - const int type, const size_t element_size, - const char *StructID) +static char *BuildLongName(const char *base_name, const ShapeID Shape, const int type, + const size_t element_size, const char *StructID) { const char *Prefix = NamePrefix(Shape); size_t StructIDLen = 0; @@ -259,8 +249,7 @@ static char *BuildLongName(const char *base_name, const ShapeID Shape, char *Ret = (char *)malloc(Len); if (StructID) { - snprintf(Ret, Len, "%s_%zd_%d_%s", Prefix, element_size, type, - StructID); + snprintf(Ret, Len, "%s_%zd_%d_%s", Prefix, element_size, type, StructID); } else { @@ -271,8 +260,8 @@ static char *BuildLongName(const char *base_name, const ShapeID Shape, return Ret; } -void BP5Serializer::BreakdownVarName(const char *Name, char **base_name_p, - int *type_p, int *element_size_p) +void BP5Serializer::BreakdownVarName(const char *Name, char **base_name_p, int *type_p, + int *element_size_p) { int Type; int ElementSize; @@ -295,8 +284,7 @@ char *BP5Serializer::BuildArrayDimsName(const char *base_name, const int type, return Ret; } -char *BP5Serializer::BuildArrayDBCountName(const char *base_name, - const int type, +char *BP5Serializer::BuildArrayDBCountName(const char *base_name, const int type, const int element_size) { const char *Prefix = NamePrefix(ShapeID::GlobalArray); @@ -308,8 +296,7 @@ char *BP5Serializer::BuildArrayDBCountName(const char *base_name, return Ret; } -char *BP5Serializer::BuildArrayBlockCountName(const char *base_name, - const int type, +char *BP5Serializer::BuildArrayBlockCountName(const char *base_name, const int type, const int element_size) { const char *Prefix = NamePrefix(ShapeID::GlobalArray); @@ -361,52 +348,45 @@ void BP5Serializer::AddField(FMFieldList *FieldP, int *CountP, const char *Name, free(TransType); } -void BP5Serializer::AddFixedArrayField(FMFieldList *FieldP, int *CountP, - const char *Name, const DataType Type, - int ElementSize, int DimCount) +void BP5Serializer::AddFixedArrayField(FMFieldList *FieldP, int *CountP, const char *Name, + const DataType Type, int ElementSize, int DimCount) { const char *TransType = TranslateADIOS2Type2FFS(Type); char *TypeWithArray = (char *)malloc(strlen(TransType) + 16); - snprintf(TypeWithArray, strlen(TransType) + 16, "*(%s[%d])", TransType, - DimCount); + snprintf(TypeWithArray, strlen(TransType) + 16, "*(%s[%d])", TransType, DimCount); free((void *)TransType); AddSimpleField(FieldP, CountP, Name, TypeWithArray, sizeof(void *)); free(TypeWithArray); (*FieldP)[*CountP - 1].field_size = ElementSize; } -void BP5Serializer::AddVarArrayField(FMFieldList *FieldP, int *CountP, - const char *Name, const DataType Type, - int ElementSize, char *SizeField) +void BP5Serializer::AddVarArrayField(FMFieldList *FieldP, int *CountP, const char *Name, + const DataType Type, int ElementSize, char *SizeField) { char *TransType = TranslateADIOS2Type2FFS(Type); - char *TypeWithArray = - (char *)malloc(strlen(TransType) + strlen(SizeField) + 8); - snprintf(TypeWithArray, strlen(TransType) + strlen(SizeField) + 8, "%s[%s]", - TransType, SizeField); + char *TypeWithArray = (char *)malloc(strlen(TransType) + strlen(SizeField) + 8); + snprintf(TypeWithArray, strlen(TransType) + strlen(SizeField) + 8, "%s[%s]", TransType, + SizeField); free(TransType); AddSimpleField(FieldP, CountP, Name, TypeWithArray, sizeof(void *)); free(TypeWithArray); (*FieldP)[*CountP - 1].field_size = ElementSize; } -void BP5Serializer::AddDoubleArrayField(FMFieldList *FieldP, int *CountP, - const char *Name, const DataType Type, - int ElementSize, char *SizeField) +void BP5Serializer::AddDoubleArrayField(FMFieldList *FieldP, int *CountP, const char *Name, + const DataType Type, int ElementSize, char *SizeField) { char *TransType = TranslateADIOS2Type2FFS(Type); - char *TypeWithArray = - (char *)malloc(strlen(TransType) + strlen(SizeField) + 8); - snprintf(TypeWithArray, strlen(TransType) + strlen(SizeField) + 8, - "%s[2][%s]", TransType, SizeField); + char *TypeWithArray = (char *)malloc(strlen(TransType) + strlen(SizeField) + 8); + snprintf(TypeWithArray, strlen(TransType) + strlen(SizeField) + 8, "%s[2][%s]", TransType, + SizeField); AddSimpleField(FieldP, CountP, Name, TypeWithArray, sizeof(void *)); free(TransType); free(TypeWithArray); (*FieldP)[*CountP - 1].field_size = ElementSize; } -void BP5Serializer::ValidateWriterRec(BP5Serializer::BP5WriterRec Rec, - void *Variable) +void BP5Serializer::ValidateWriterRec(BP5Serializer::BP5WriterRec Rec, void *Variable) { core::VariableBase *VB = static_cast(Variable); if ((VB->m_Operations.size() == 0) && Rec->OperatorType) @@ -426,13 +406,11 @@ void BP5Serializer::ValidateWriterRec(BP5Serializer::BP5WriterRec Rec, else if (VB->m_Operations.size() > 1) { // removed operator case - helper::Throw( - "Toolkit", "format::BP5Serializer", "Marshal", - "BP5 does not support multiple operators"); + helper::Throw("Toolkit", "format::BP5Serializer", "Marshal", + "BP5 does not support multiple operators"); } else if (Rec->OperatorType && VB->m_Operations.size() && - (VB->m_Operations[0]->m_TypeString != - std::string(Rec->OperatorType))) + (VB->m_Operations[0]->m_TypeString != std::string(Rec->OperatorType))) { // removed operator case helper::Throw( @@ -441,13 +419,13 @@ void BP5Serializer::ValidateWriterRec(BP5Serializer::BP5WriterRec Rec, } } -BP5Serializer::BP5WriterRec -BP5Serializer::CreateWriterRec(void *Variable, const char *Name, DataType Type, - size_t ElemSize, size_t DimCount) +BP5Serializer::BP5WriterRec BP5Serializer::CreateWriterRec(void *Variable, const char *Name, + DataType Type, size_t ElemSize, + size_t DimCount) { core::VariableBase *VB = static_cast(Variable); - Info.RecList = (BP5WriterRec)realloc( - Info.RecList, (Info.RecCount + 1) * sizeof(Info.RecList[0])); + Info.RecList = + (BP5WriterRec)realloc(Info.RecList, (Info.RecCount + 1) * sizeof(Info.RecList[0])); BP5WriterRec Rec = &Info.RecList[Info.RecCount]; if (Type == DataType::String) ElemSize = sizeof(char *); @@ -460,8 +438,7 @@ BP5Serializer::CreateWriterRec(void *Variable, const char *Name, DataType Type, char *TextStructID = NULL; if (Type == DataType::Struct) { - core::VariableStruct *VS = - static_cast(Variable); + core::VariableStruct *VS = static_cast(Variable); core::StructDefinition *SD = VS->m_WriteStructDefinition; if (VS->m_ReadStructDefinition) SD = VS->m_ReadStructDefinition; // Data has been converted to this @@ -476,8 +453,7 @@ BP5Serializer::CreateWriterRec(void *Variable, const char *Name, DataType Type, { size_t Len = strlen(List[i].field_type) + 10; char *Tmp = (char *)malloc(Len); - snprintf(Tmp, Len, "%s[%d]", List[i].field_type, - (int)SD->ElementCount(i)); + snprintf(Tmp, Len, "%s[%d]", List[i].field_type, (int)SD->ElementCount(i)); free((void *)List[i].field_type); List[i].field_type = Tmp; } @@ -493,16 +469,14 @@ BP5Serializer::CreateWriterRec(void *Variable, const char *Name, DataType Type, struct_list[0].field_list = List; struct_list[0].struct_size = (int)SD->StructSize(); - FMFormat Format = - register_data_format(Info.LocalFMContext, &struct_list[0]); + FMFormat Format = register_data_format(Info.LocalFMContext, &struct_list[0]); int IDLength; char *ServerID = get_server_ID_FMformat(Format, &IDLength); TextStructID = (char *)malloc(IDLength * 2 + 1); for (int i = 0; i < IDLength; i++) { - snprintf(&TextStructID[i * 2], 3, "%02x", - ((unsigned char *)ServerID)[i]); + snprintf(&TextStructID[i * 2], 3, "%02x", ((unsigned char *)ServerID)[i]); } NewStructFormats.push_back(Format); } @@ -511,8 +485,7 @@ BP5Serializer::CreateWriterRec(void *Variable, const char *Name, DataType Type, // simple field, only add base value FMField to metadata char *SstName = BuildVarName(Name, VB->m_ShapeID, 0, 0); // size and type in full field spec - AddField(&Info.MetaFields, &Info.MetaFieldCount, SstName, Type, - (int)ElemSize); + AddField(&Info.MetaFields, &Info.MetaFieldCount, SstName, Type, (int)ElemSize); free(SstName); RecalcMarshalStorageSize(); Rec->MetaOffset = Info.MetaFields[Info.MetaFieldCount - 1].field_offset; @@ -529,8 +502,7 @@ BP5Serializer::CreateWriterRec(void *Variable, const char *Name, DataType Type, } // Array field. To Metadata, add FMFields for DimCount, Shape, Count // and Offsets matching _MetaArrayRec - char *LongName = BuildLongName(Name, VB->m_ShapeID, (int)Type, ElemSize, - TextStructID); + char *LongName = BuildLongName(Name, VB->m_ShapeID, (int)Type, ElemSize, TextStructID); const char *ArrayTypeName = "MetaArray"; int FieldSize = sizeof(MetaArrayRec); @@ -563,13 +535,13 @@ BP5Serializer::CreateWriterRec(void *Variable, const char *Name, DataType Type, } Rec->MinMaxOffset = FieldSize; FieldSize += sizeof(char *); - AddSimpleField(&Info.MetaFields, &Info.MetaFieldCount, LongName, - MMArrayName, FieldSize); + AddSimpleField(&Info.MetaFields, &Info.MetaFieldCount, LongName, MMArrayName, + FieldSize); } else { - AddSimpleField(&Info.MetaFields, &Info.MetaFieldCount, LongName, - ArrayTypeName, FieldSize); + AddSimpleField(&Info.MetaFields, &Info.MetaFieldCount, LongName, ArrayTypeName, + FieldSize); } Rec->MetaOffset = Info.MetaFields[Info.MetaFieldCount - 1].field_offset; Rec->OperatorType = OperatorType; @@ -590,11 +562,10 @@ size_t *BP5Serializer::CopyDims(const size_t Count, const size_t *Vals) return Ret; } -size_t *BP5Serializer::AppendDims(size_t *OldDims, const size_t OldCount, - const size_t Count, const size_t *Vals) +size_t *BP5Serializer::AppendDims(size_t *OldDims, const size_t OldCount, const size_t Count, + const size_t *Vals) { - size_t *Ret = - (size_t *)realloc(OldDims, (OldCount + Count) * sizeof(Ret[0])); + size_t *Ret = (size_t *)realloc(OldDims, (OldCount + Count) * sizeof(Ret[0])); memcpy(Ret + OldCount, Vals, Count * sizeof(Ret[0])); return Ret; } @@ -620,19 +591,17 @@ void BP5Serializer::DumpDeferredBlocks(bool forceCopyDeferred) { for (auto &Def : DeferredExterns) { - MetaArrayRec *MetaEntry = - (MetaArrayRec *)((char *)(MetadataBuf) + Def.MetaOffset); + MetaArrayRec *MetaEntry = (MetaArrayRec *)((char *)(MetadataBuf) + Def.MetaOffset); size_t DataOffset = m_PriorDataBufferSizeTotal + - CurDataBuffer->AddToVec(Def.DataSize, Def.Data, Def.AlignReq, - forceCopyDeferred); + CurDataBuffer->AddToVec(Def.DataSize, Def.Data, Def.AlignReq, forceCopyDeferred); MetaEntry->DataBlockLocation[Def.BlockID] = DataOffset; } DeferredExterns.clear(); } -static void GetMinMax(const void *Data, size_t ElemCount, const DataType Type, - MinMaxStruct &MinMax, MemorySpace MemSpace) +static void GetMinMax(const void *Data, size_t ElemCount, const DataType Type, MinMaxStruct &MinMax, + MemorySpace MemSpace) { MinMax.Init(Type); if (ElemCount == 0) @@ -641,41 +610,37 @@ static void GetMinMax(const void *Data, size_t ElemCount, const DataType Type, { } #ifdef ADIOS2_HAVE_GPU_SUPPORT -#define pertype(T, N) \ - else if (MemSpace == MemorySpace::GPU && Type == helper::GetDataType()) \ - { \ - const T *values = (const T *)Data; \ - if (!std::is_same::value) \ - helper::GPUMinMax(values, ElemCount, MinMax.MinUnion.field_##N, \ - MinMax.MaxUnion.field_##N); \ +#define pertype(T, N) \ + else if (MemSpace == MemorySpace::GPU && Type == helper::GetDataType()) \ + { \ + const T *values = (const T *)Data; \ + if (!std::is_same::value) \ + helper::GPUMinMax(values, ElemCount, MinMax.MinUnion.field_##N, \ + MinMax.MaxUnion.field_##N); \ } ADIOS2_FOREACH_MINMAX_STDTYPE_2ARGS(pertype) #undef pertype #endif -#define pertype(T, N) \ - else if (Type == helper::GetDataType()) \ - { \ - const T *values = (const T *)Data; \ - auto res = std::minmax_element(values, values + ElemCount); \ - MinMax.MinUnion.field_##N = *res.first; \ - MinMax.MaxUnion.field_##N = *res.second; \ +#define pertype(T, N) \ + else if (Type == helper::GetDataType()) \ + { \ + const T *values = (const T *)Data; \ + auto res = std::minmax_element(values, values + ElemCount); \ + MinMax.MinUnion.field_##N = *res.first; \ + MinMax.MaxUnion.field_##N = *res.second; \ } ADIOS2_FOREACH_MINMAX_STDTYPE_2ARGS(pertype) } -void BP5Serializer::Marshal(void *Variable, const char *Name, - const DataType Type, size_t ElemSize, - size_t DimCount, const size_t *Shape, - const size_t *Count, const size_t *Offsets, - const void *Data, bool Sync, +void BP5Serializer::Marshal(void *Variable, const char *Name, const DataType Type, size_t ElemSize, + size_t DimCount, const size_t *Shape, const size_t *Count, + const size_t *Offsets, const void *Data, bool Sync, BufferV::BufferPos *Span) { - auto lf_QueueSpanMinMax = [&](const format::BufferV::BufferPos Data, - const size_t ElemCount, const DataType Type, - const MemorySpace MemSpace, - const size_t MetaOffset, - const size_t MinMaxOffset, + auto lf_QueueSpanMinMax = [&](const format::BufferV::BufferPos Data, const size_t ElemCount, + const DataType Type, const MemorySpace MemSpace, + const size_t MetaOffset, const size_t MinMaxOffset, const size_t BlockNum) { DeferredSpanMinMax entry = {Data, ElemCount, Type, MemSpace, MetaOffset, MinMaxOffset, BlockNum}; @@ -740,8 +705,7 @@ void BP5Serializer::Marshal(void *Variable, const char *Name, else { MemorySpace MemSpace = VB->GetMemorySpace(Data); - MetaArrayRec *MetaEntry = - (MetaArrayRec *)((char *)(MetadataBuf) + Rec->MetaOffset); + MetaArrayRec *MetaEntry = (MetaArrayRec *)((char *)(MetadataBuf) + Rec->MetaOffset); size_t ElemCount = CalcSize(DimCount, Count); size_t DataOffset = 0; size_t CompressedSize = 0; @@ -749,8 +713,8 @@ void BP5Serializer::Marshal(void *Variable, const char *Name, MetaEntry->Dims = DimCount; if (CurDataBuffer == NULL) { - helper::Throw("Toolkit", "format::BP5Serializer", - "Marshal", "without prior Init"); + helper::Throw("Toolkit", "format::BP5Serializer", "Marshal", + "without prior Init"); } MinMaxStruct MinMax; @@ -772,29 +736,25 @@ void BP5Serializer::Marshal(void *Variable, const char *Name, tmpOffsets.push_back(Offsets[i]); } size_t AllocSize = ElemCount * ElemSize + 100; - BufferV::BufferPos pos = - CurDataBuffer->Allocate(AllocSize, ElemSize); - char *CompressedData = - (char *)GetPtr(pos.bufferIdx, pos.posInBuffer); + BufferV::BufferPos pos = CurDataBuffer->Allocate(AllocSize, ElemSize); + char *CompressedData = (char *)GetPtr(pos.bufferIdx, pos.posInBuffer); DataOffset = m_PriorDataBufferSizeTotal + pos.globalPos; - CompressedSize = VB->m_Operations[0]->Operate( - (const char *)Data, tmpOffsets, tmpCount, (DataType)Rec->Type, - CompressedData); + CompressedSize = VB->m_Operations[0]->Operate((const char *)Data, tmpOffsets, tmpCount, + (DataType)Rec->Type, CompressedData); // if the operator was not applied if (CompressedSize == 0) CompressedSize = helper::CopyMemoryWithOpHeader( - (const char *)Data, tmpCount, (DataType)Rec->Type, - CompressedData, VB->m_Operations[0]->GetHeaderSize(), - MemSpace); + (const char *)Data, tmpCount, (DataType)Rec->Type, CompressedData, + VB->m_Operations[0]->GetHeaderSize(), MemSpace); CurDataBuffer->DownsizeLastAlloc(AllocSize, CompressedSize); } else if (Span == nullptr) { if (!DeferAddToVec) { - DataOffset = m_PriorDataBufferSizeTotal + - CurDataBuffer->AddToVec(ElemCount * ElemSize, Data, - ElemSize, Sync, MemSpace); + DataOffset = + m_PriorDataBufferSizeTotal + + CurDataBuffer->AddToVec(ElemCount * ElemSize, Data, ElemSize, Sync, MemSpace); } } else @@ -817,8 +777,7 @@ void BP5Serializer::Marshal(void *Variable, const char *Name, MetaEntry->DataBlockLocation[0] = DataOffset; if (Rec->OperatorType) { - MetaArrayRecOperator *OpEntry = - (MetaArrayRecOperator *)MetaEntry; + MetaArrayRecOperator *OpEntry = (MetaArrayRecOperator *)MetaEntry; OpEntry->DataBlockSize = (size_t *)malloc(sizeof(size_t)); OpEntry->DataBlockSize[0] = CompressedSize; } @@ -828,26 +787,22 @@ void BP5Serializer::Marshal(void *Variable, const char *Name, MetaEntry->Offsets = NULL; if (m_StatsLevel > 0) { - void **MMPtrLoc = - (void **)(((char *)MetaEntry) + Rec->MinMaxOffset); + void **MMPtrLoc = (void **)(((char *)MetaEntry) + Rec->MinMaxOffset); *MMPtrLoc = (void *)malloc(ElemSize * 2); if (!Span) { memcpy(*MMPtrLoc, &MinMax.MinUnion, ElemSize); - memcpy(((char *)*MMPtrLoc) + ElemSize, &MinMax.MaxUnion, - ElemSize); + memcpy(((char *)*MMPtrLoc) + ElemSize, &MinMax.MaxUnion, ElemSize); } else { - lf_QueueSpanMinMax(*Span, ElemCount, (DataType)Rec->Type, - MemSpace, Rec->MetaOffset, - Rec->MinMaxOffset, 0 /*BlockNum*/); + lf_QueueSpanMinMax(*Span, ElemCount, (DataType)Rec->Type, MemSpace, + Rec->MetaOffset, Rec->MinMaxOffset, 0 /*BlockNum*/); } } if (DeferAddToVec) { - DeferredExtern rec = {Rec->MetaOffset, 0, Data, - ElemCount * ElemSize, ElemSize}; + DeferredExtern rec = {Rec->MetaOffset, 0, Data, ElemCount * ElemSize, ElemSize}; DeferredExterns.push_back(rec); } } @@ -861,63 +816,50 @@ void BP5Serializer::Marshal(void *Variable, const char *Name, // MetaEntry->DBCount += DimCount; MetaEntry->BlockCount++; - MetaEntry->Count = - AppendDims(MetaEntry->Count, PreviousDBCount, DimCount, Count); - MetaEntry->DataBlockLocation = - (size_t *)realloc(MetaEntry->DataBlockLocation, - MetaEntry->BlockCount * sizeof(size_t)); - MetaEntry->DataBlockLocation[MetaEntry->BlockCount - 1] = - DataOffset; + MetaEntry->Count = AppendDims(MetaEntry->Count, PreviousDBCount, DimCount, Count); + MetaEntry->DataBlockLocation = (size_t *)realloc( + MetaEntry->DataBlockLocation, MetaEntry->BlockCount * sizeof(size_t)); + MetaEntry->DataBlockLocation[MetaEntry->BlockCount - 1] = DataOffset; if (Rec->OperatorType) { - MetaArrayRecOperator *OpEntry = - (MetaArrayRecOperator *)MetaEntry; + MetaArrayRecOperator *OpEntry = (MetaArrayRecOperator *)MetaEntry; OpEntry->DataBlockSize = - (size_t *)realloc(OpEntry->DataBlockSize, - OpEntry->BlockCount * sizeof(size_t)); - OpEntry->DataBlockSize[OpEntry->BlockCount - 1] = - CompressedSize; + (size_t *)realloc(OpEntry->DataBlockSize, OpEntry->BlockCount * sizeof(size_t)); + OpEntry->DataBlockSize[OpEntry->BlockCount - 1] = CompressedSize; } if (m_StatsLevel > 0) { - void **MMPtrLoc = - (void **)(((char *)MetaEntry) + Rec->MinMaxOffset); - *MMPtrLoc = (void *)realloc(*MMPtrLoc, MetaEntry->BlockCount * - ElemSize * 2); + void **MMPtrLoc = (void **)(((char *)MetaEntry) + Rec->MinMaxOffset); + *MMPtrLoc = (void *)realloc(*MMPtrLoc, MetaEntry->BlockCount * ElemSize * 2); if (!Span) { - memcpy(((char *)*MMPtrLoc) + - ElemSize * (2 * (MetaEntry->BlockCount - 1)), + memcpy(((char *)*MMPtrLoc) + ElemSize * (2 * (MetaEntry->BlockCount - 1)), &MinMax.MinUnion, ElemSize); - memcpy(((char *)*MMPtrLoc) + - ElemSize * (2 * (MetaEntry->BlockCount - 1) + 1), + memcpy(((char *)*MMPtrLoc) + ElemSize * (2 * (MetaEntry->BlockCount - 1) + 1), &MinMax.MaxUnion, ElemSize); } else { - lf_QueueSpanMinMax(*Span, ElemCount, (DataType)Rec->Type, - MemSpace, Rec->MetaOffset, - Rec->MinMaxOffset, + lf_QueueSpanMinMax(*Span, ElemCount, (DataType)Rec->Type, MemSpace, + Rec->MetaOffset, Rec->MinMaxOffset, MetaEntry->BlockCount - 1 /*BlockNum*/); } } if (DeferAddToVec) { - DeferredExterns.push_back({Rec->MetaOffset, - MetaEntry->BlockCount - 1, Data, + DeferredExterns.push_back({Rec->MetaOffset, MetaEntry->BlockCount - 1, Data, ElemCount * ElemSize, ElemSize}); } if (Offsets) - MetaEntry->Offsets = AppendDims( - MetaEntry->Offsets, PreviousDBCount, DimCount, Offsets); + MetaEntry->Offsets = + AppendDims(MetaEntry->Offsets, PreviousDBCount, DimCount, Offsets); } } } -void BP5Serializer::MarshalAttribute(const char *Name, const DataType Type, - size_t ElemSize, size_t ElemCount, - const void *Data) +void BP5Serializer::MarshalAttribute(const char *Name, const DataType Type, size_t ElemSize, + size_t ElemCount, const void *Data) { const char *AttrString = NULL; @@ -933,16 +875,12 @@ void BP5Serializer::MarshalAttribute(const char *Name, const DataType Type, if (ElemCount == (size_t)(-1)) { // simple field, only simple attribute name and value - char *SstName = - BuildVarName(Name, ShapeID::GlobalValue, (int)Type, (int)ElemSize); - AddField(&Info.AttributeFields, &Info.AttributeFieldCount, SstName, - Type, (int)ElemSize); + char *SstName = BuildVarName(Name, ShapeID::GlobalValue, (int)Type, (int)ElemSize); + AddField(&Info.AttributeFields, &Info.AttributeFieldCount, SstName, Type, (int)ElemSize); free(SstName); RecalcAttributeStorageSize(); - int DataOffset = - Info.AttributeFields[Info.AttributeFieldCount - 1].field_offset; - memcpy((char *)(Info.AttributeData) + DataOffset, DataAddress, - ElemSize); + int DataOffset = Info.AttributeFields[Info.AttributeFieldCount - 1].field_offset; + memcpy((char *)(Info.AttributeData) + DataOffset, DataAddress, ElemSize); } else { @@ -951,23 +889,19 @@ void BP5Serializer::MarshalAttribute(const char *Name, const DataType Type, char *ArrayName = BuildVarName(Name, ShapeID::GlobalArray, 0, 0); // size and type in full field spec char *ElemCountName = ConcatName(ArrayName, "ElemCount"); - AddField(&Info.AttributeFields, &Info.AttributeFieldCount, - ElemCountName, DataType::Int64, sizeof(int64_t)); - int CountOffset = - Info.AttributeFields[Info.AttributeFieldCount - 1].field_offset; - AddVarArrayField(&Info.AttributeFields, &Info.AttributeFieldCount, - ArrayName, Type, (int)ElemSize, ElemCountName); - int DataOffset = - Info.AttributeFields[Info.AttributeFieldCount - 1].field_offset; + AddField(&Info.AttributeFields, &Info.AttributeFieldCount, ElemCountName, DataType::Int64, + sizeof(int64_t)); + int CountOffset = Info.AttributeFields[Info.AttributeFieldCount - 1].field_offset; + AddVarArrayField(&Info.AttributeFields, &Info.AttributeFieldCount, ArrayName, Type, + (int)ElemSize, ElemCountName); + int DataOffset = Info.AttributeFields[Info.AttributeFieldCount - 1].field_offset; free(ElemCountName); free(ArrayName); RecalcAttributeStorageSize(); - memcpy((char *)(Info.AttributeData) + CountOffset, &ElemCount, - sizeof(size_t)); - memcpy((char *)(Info.AttributeData) + DataOffset, &Data, - sizeof(void *)); + memcpy((char *)(Info.AttributeData) + CountOffset, &ElemCount, sizeof(size_t)); + memcpy((char *)(Info.AttributeData) + DataOffset, &Data, sizeof(void *)); } } @@ -996,16 +930,15 @@ void BP5Serializer::OnetimeMarshalAttribute(const core::AttributeBase &baseAttr) Data = &(attribute->m_DataArray[0]); } } -#define per_type_code(T) \ - else if (Type == helper::GetDataType()) \ - { \ - const core::Attribute *attribute = \ - dynamic_cast *>(&baseAttr); \ - Data = (void *)(&attribute->m_DataSingleValue); \ - if (!attribute->m_IsSingleValue) \ - { \ - Data = (void *)attribute->m_DataArray.data(); \ - } \ +#define per_type_code(T) \ + else if (Type == helper::GetDataType()) \ + { \ + const core::Attribute *attribute = dynamic_cast *>(&baseAttr); \ + Data = (void *)(&attribute->m_DataSingleValue); \ + if (!attribute->m_IsSingleValue) \ + { \ + Data = (void *)attribute->m_DataArray.data(); \ + } \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(per_type_code) @@ -1014,9 +947,8 @@ void BP5Serializer::OnetimeMarshalAttribute(const core::AttributeBase &baseAttr) OnetimeMarshalAttribute(Name, Type, ElemCount, Data); } -void BP5Serializer::OnetimeMarshalAttribute(const char *Name, - const DataType Type, - size_t ElemCount, const void *Data) +void BP5Serializer::OnetimeMarshalAttribute(const char *Name, const DataType Type, size_t ElemCount, + const void *Data) { if (!PendingAttrs) PendingAttrs = new (BP5AttrStruct); @@ -1029,10 +961,8 @@ void BP5Serializer::OnetimeMarshalAttribute(const char *Name, { PendingAttrs->StrAttrCount++; PendingAttrs->StrAttrs = (struct StringArrayAttr *)realloc( - PendingAttrs->StrAttrs, - sizeof(StringArrayAttr) * PendingAttrs->StrAttrCount); - StringArrayAttr *ThisAttr = - &PendingAttrs->StrAttrs[PendingAttrs->StrAttrCount - 1]; + PendingAttrs->StrAttrs, sizeof(StringArrayAttr) * PendingAttrs->StrAttrCount); + StringArrayAttr *ThisAttr = &PendingAttrs->StrAttrs[PendingAttrs->StrAttrCount - 1]; memset((void *)ThisAttr, 0, sizeof(*ThisAttr)); ThisAttr->Name = TmpName; if (ElemCount == (size_t)-1) @@ -1046,8 +976,7 @@ void BP5Serializer::OnetimeMarshalAttribute(const char *Name, { std::string *StrArray = (std::string *)Data; ThisAttr->ElementCount = ElemCount; - ThisAttr->Values = - (const char **)malloc(sizeof(char *) * ElemCount); + ThisAttr->Values = (const char **)malloc(sizeof(char *) * ElemCount); for (size_t i = 0; i < ElemCount; i++) { ThisAttr->Values[i] = strdup(StrArray[i].c_str()); @@ -1058,17 +987,15 @@ void BP5Serializer::OnetimeMarshalAttribute(const char *Name, { if ((Type == DataType::None) || (Type == DataType::Struct)) { - helper::Throw( - "Toolkit", "format::BP5Serializer", - "doesn't support this type of Attribute", ToString(Type)); + helper::Throw("Toolkit", "format::BP5Serializer", + "doesn't support this type of Attribute", + ToString(Type)); } char *Array = (char *)Data; PendingAttrs->PrimAttrCount++; PendingAttrs->PrimAttrs = (struct PrimitiveTypeAttr *)realloc( - PendingAttrs->PrimAttrs, - sizeof(PrimitiveTypeAttr) * PendingAttrs->PrimAttrCount); - PrimitiveTypeAttr *ThisAttr = - &PendingAttrs->PrimAttrs[PendingAttrs->PrimAttrCount - 1]; + PendingAttrs->PrimAttrs, sizeof(PrimitiveTypeAttr) * PendingAttrs->PrimAttrCount); + PrimitiveTypeAttr *ThisAttr = &PendingAttrs->PrimAttrs[PendingAttrs->PrimAttrCount - 1]; if (ElemCount == (size_t)-1) { ElemCount = 1; @@ -1077,8 +1004,7 @@ void BP5Serializer::OnetimeMarshalAttribute(const char *Name, ThisAttr->Name = TmpName; ThisAttr->TotalElementSize = ElemCount * DataTypeSize[(int)Type]; ThisAttr->Values = (char *)malloc(ThisAttr->TotalElementSize); - std::memcpy((void *)ThisAttr->Values, (void *)Array, - ThisAttr->TotalElementSize); + std::memcpy((void *)ThisAttr->Values, (void *)Array, ThisAttr->TotalElementSize); } } @@ -1086,8 +1012,8 @@ void BP5Serializer::InitStep(BufferV *DataBuffer) { if (CurDataBuffer != NULL) { - helper::Throw("Toolkit", "format::BP5Serializer", - "InitStep", "without prior Close"); + helper::Throw("Toolkit", "format::BP5Serializer", "InitStep", + "without prior Close"); } CurDataBuffer = DataBuffer; m_PriorDataBufferSizeTotal = 0; @@ -1099,36 +1025,32 @@ void BP5Serializer::ProcessDeferredMinMax() { MinMaxStruct MinMax; MinMax.Init(Def.Type); - void *Ptr = reinterpret_cast( - GetPtr(Def.Data.bufferIdx, Def.Data.posInBuffer)); + void *Ptr = reinterpret_cast(GetPtr(Def.Data.bufferIdx, Def.Data.posInBuffer)); GetMinMax(Ptr, Def.ElemCount, Def.Type, MinMax, Def.MemSpace); - MetaArrayRecMM *MetaEntry = - (MetaArrayRecMM *)((char *)(MetadataBuf) + Def.MetaOffset); + MetaArrayRecMM *MetaEntry = (MetaArrayRecMM *)((char *)(MetadataBuf) + Def.MetaOffset); void **MMPtrLoc = (void **)(((char *)MetaEntry) + Def.MinMaxOffset); auto ElemSize = helper::GetDataTypeSize(Def.Type); - memcpy(((char *)*MMPtrLoc) + ElemSize * (2 * (Def.BlockNum)), - &MinMax.MinUnion, ElemSize); - memcpy(((char *)*MMPtrLoc) + ElemSize * (2 * (Def.BlockNum) + 1), - &MinMax.MaxUnion, ElemSize); + memcpy(((char *)*MMPtrLoc) + ElemSize * (2 * (Def.BlockNum)), &MinMax.MinUnion, ElemSize); + memcpy(((char *)*MMPtrLoc) + ElemSize * (2 * (Def.BlockNum) + 1), &MinMax.MaxUnion, + ElemSize); } DefSpanMinMax.clear(); } -BufferV *BP5Serializer::ReinitStepData(BufferV *DataBuffer, - bool forceCopyDeferred) +BufferV *BP5Serializer::ReinitStepData(BufferV *DataBuffer, bool forceCopyDeferred) { if (CurDataBuffer == NULL) { - helper::Throw("Toolkit", "format::BP5Serializer", - "ReinitStepData", "without prior Init"); + helper::Throw("Toolkit", "format::BP5Serializer", "ReinitStepData", + "without prior Init"); } // Dump data for externs into iovec DumpDeferredBlocks(forceCopyDeferred); - m_PriorDataBufferSizeTotal += CurDataBuffer->AddToVec( - 0, NULL, m_BufferBlockSize, true); // output block size aligned + m_PriorDataBufferSizeTotal += + CurDataBuffer->AddToVec(0, NULL, m_BufferBlockSize, true); // output block size aligned ProcessDeferredMinMax(); BufferV *tmp = CurDataBuffer; @@ -1143,25 +1065,20 @@ void BP5Serializer::CollectFinalShapeValues() BP5WriterRec Rec = &Info.RecList[i]; if (Rec->Shape == ShapeID::GlobalArray) { - core::VariableBase *VB = - static_cast(Rec->Key); - struct BP5MetadataInfoStruct *MBase = - (struct BP5MetadataInfoStruct *)MetadataBuf; + core::VariableBase *VB = static_cast(Rec->Key); + struct BP5MetadataInfoStruct *MBase = (struct BP5MetadataInfoStruct *)MetadataBuf; int AlreadyWritten = BP5BitfieldTest(MBase, Rec->FieldID); if (!AlreadyWritten) continue; - MetaArrayRec *MetaEntry = - (MetaArrayRec *)((char *)(MetadataBuf) + Rec->MetaOffset); + MetaArrayRec *MetaEntry = (MetaArrayRec *)((char *)(MetadataBuf) + Rec->MetaOffset); - memcpy(MetaEntry->Shape, VB->Shape().data(), - Rec->DimCount * sizeof(size_t)); + memcpy(MetaEntry->Shape, VB->Shape().data(), Rec->DimCount * sizeof(size_t)); } } } -BP5Serializer::TimestepInfo BP5Serializer::CloseTimestep(int timestep, - bool forceCopyDeferred) +BP5Serializer::TimestepInfo BP5Serializer::CloseTimestep(int timestep, bool forceCopyDeferred) { // EndStep() std::vector Formats; @@ -1173,36 +1090,28 @@ BP5Serializer::TimestepInfo BP5Serializer::CloseTimestep(int timestep, {"complex4", fcomplex_field_list, sizeof(fcomplex_struct), NULL}, {"complex8", dcomplex_field_list, sizeof(dcomplex_struct), NULL}, {"MetaArray", MetaArrayRecListPtr, sizeof(MetaArrayRec), NULL}, - {"MetaArrayOp", MetaArrayRecOperatorListPtr, - sizeof(MetaArrayRecOperator), NULL}, - {"MetaArrayMM1", MetaArrayRecMM1ListPtr, sizeof(MetaArrayRecMM), + {"MetaArrayOp", MetaArrayRecOperatorListPtr, sizeof(MetaArrayRecOperator), NULL}, + {"MetaArrayMM1", MetaArrayRecMM1ListPtr, sizeof(MetaArrayRecMM), NULL}, + {"MetaArrayOpMM1", MetaArrayRecOperatorMM1ListPtr, sizeof(MetaArrayRecOperatorMM), NULL}, - {"MetaArrayOpMM1", MetaArrayRecOperatorMM1ListPtr, - sizeof(MetaArrayRecOperatorMM), NULL}, - {"MetaArrayMM2", MetaArrayRecMM2ListPtr, sizeof(MetaArrayRecMM), + {"MetaArrayMM2", MetaArrayRecMM2ListPtr, sizeof(MetaArrayRecMM), NULL}, + {"MetaArrayOpMM2", MetaArrayRecOperatorMM2ListPtr, sizeof(MetaArrayRecOperatorMM), NULL}, - {"MetaArrayOpMM2", MetaArrayRecOperatorMM2ListPtr, - sizeof(MetaArrayRecOperatorMM), NULL}, - {"MetaArrayMM4", MetaArrayRecMM4ListPtr, sizeof(MetaArrayRecMM), + {"MetaArrayMM4", MetaArrayRecMM4ListPtr, sizeof(MetaArrayRecMM), NULL}, + {"MetaArrayOpMM4", MetaArrayRecOperatorMM4ListPtr, sizeof(MetaArrayRecOperatorMM), NULL}, - {"MetaArrayOpMM4", MetaArrayRecOperatorMM4ListPtr, - sizeof(MetaArrayRecOperatorMM), NULL}, - {"MetaArrayMM8", MetaArrayRecMM8ListPtr, sizeof(MetaArrayRecMM), + {"MetaArrayMM8", MetaArrayRecMM8ListPtr, sizeof(MetaArrayRecMM), NULL}, + {"MetaArrayOpMM8", MetaArrayRecOperatorMM8ListPtr, sizeof(MetaArrayRecOperatorMM), NULL}, - {"MetaArrayOpMM8", MetaArrayRecOperatorMM8ListPtr, - sizeof(MetaArrayRecOperatorMM), NULL}, - {"MetaArrayMM16", MetaArrayRecMM16ListPtr, sizeof(MetaArrayRecMM), + {"MetaArrayMM16", MetaArrayRecMM16ListPtr, sizeof(MetaArrayRecMM), NULL}, + {"MetaArrayOpMM16", MetaArrayRecOperatorMM16ListPtr, sizeof(MetaArrayRecOperatorMM), NULL}, - {"MetaArrayOpMM16", MetaArrayRecOperatorMM16ListPtr, - sizeof(MetaArrayRecOperatorMM), NULL}, {NULL, NULL, 0, NULL}}; struct_list[0].format_name = "MetaData"; struct_list[0].field_list = Info.MetaFields; - struct_list[0].struct_size = - FMstruct_size_field_list(Info.MetaFields, sizeof(char *)); + struct_list[0].struct_size = FMstruct_size_field_list(Info.MetaFields, sizeof(char *)); - FMFormat Format = - register_data_format(Info.LocalFMContext, &struct_list[0]); + FMFormat Format = register_data_format(Info.LocalFMContext, &struct_list[0]); Info.MetaFormat = Format; int size; @@ -1222,11 +1131,9 @@ BP5Serializer::TimestepInfo BP5Serializer::CloseTimestep(int timestep, {NULL, NULL, 0, NULL}}; struct_list[0].format_name = "Attributes"; struct_list[0].field_list = Info.AttributeFields; - struct_list[0].struct_size = - FMstruct_size_field_list(Info.AttributeFields, sizeof(char *)); + struct_list[0].struct_size = FMstruct_size_field_list(Info.AttributeFields, sizeof(char *)); - FMFormat Format = - register_data_format(Info.LocalFMContext, &struct_list[0]); + FMFormat Format = register_data_format(Info.LocalFMContext, &struct_list[0]); Info.AttributeFormat = Format; int size; Block.MetaMetaInfo = get_server_rep_FMformat(Format, &size); @@ -1252,20 +1159,19 @@ BP5Serializer::TimestepInfo BP5Serializer::CloseTimestep(int timestep, FFSBuffer AttributeEncodeBuffer = NULL; size_t MetaDataSize = 0; size_t AttributeSize = 0; - struct BP5MetadataInfoStruct *MBase = - (struct BP5MetadataInfoStruct *)MetadataBuf; + struct BP5MetadataInfoStruct *MBase = (struct BP5MetadataInfoStruct *)MetadataBuf; if (CurDataBuffer == NULL) { - helper::Throw("Toolkit", "format::BP5Serializer", - "CloseTimestep", "without prior Init"); + helper::Throw("Toolkit", "format::BP5Serializer", "CloseTimestep", + "without prior Init"); } // Dump data for externs into iovec DumpDeferredBlocks(forceCopyDeferred); - MBase->DataBlockSize = CurDataBuffer->AddToVec( - 0, NULL, m_BufferBlockSize, true); // output block size aligned + MBase->DataBlockSize = + CurDataBuffer->AddToVec(0, NULL, m_BufferBlockSize, true); // output block size aligned MBase->DataBlockSize += m_PriorDataBufferSizeTotal; @@ -1273,10 +1179,8 @@ BP5Serializer::TimestepInfo BP5Serializer::CloseTimestep(int timestep, CollectFinalShapeValues(); - void *MetaDataBlock = FFSencode(MetaEncodeBuffer, Info.MetaFormat, - MetadataBuf, &MetaDataSize); - BufferFFS *Metadata = - new BufferFFS(MetaEncodeBuffer, MetaDataBlock, MetaDataSize); + void *MetaDataBlock = FFSencode(MetaEncodeBuffer, Info.MetaFormat, MetadataBuf, &MetaDataSize); + BufferFFS *Metadata = new BufferFFS(MetaEncodeBuffer, MetaDataBlock, MetaDataSize); BufferFFS *AttrData = NULL; @@ -1284,11 +1188,9 @@ BP5Serializer::TimestepInfo BP5Serializer::CloseTimestep(int timestep, if (NewAttribute && Info.AttributeFields) { AttributeEncodeBuffer = create_FFSBuffer(); - void *AttributeBlock = - FFSencode(AttributeEncodeBuffer, Info.AttributeFormat, - Info.AttributeData, &AttributeSize); - AttrData = - new BufferFFS(AttributeEncodeBuffer, AttributeBlock, AttributeSize); + void *AttributeBlock = FFSencode(AttributeEncodeBuffer, Info.AttributeFormat, + Info.AttributeData, &AttributeSize); + AttrData = new BufferFFS(AttributeEncodeBuffer, AttributeBlock, AttributeSize); } if (PendingAttrs) @@ -1300,20 +1202,16 @@ BP5Serializer::TimestepInfo BP5Serializer::CloseTimestep(int timestep, register_data_format(Info.LocalFMContext, &attr_struct_list[0]); Info.AttributeFormat = GenericAttributeFormat; int size; - Block.MetaMetaInfo = - get_server_rep_FMformat(GenericAttributeFormat, &size); + Block.MetaMetaInfo = get_server_rep_FMformat(GenericAttributeFormat, &size); Block.MetaMetaInfoLen = size; - Block.MetaMetaID = - get_server_ID_FMformat(GenericAttributeFormat, &size); + Block.MetaMetaID = get_server_ID_FMformat(GenericAttributeFormat, &size); Block.MetaMetaIDLen = size; Formats.push_back(Block); } AttributeEncodeBuffer = create_FFSBuffer(); void *AttributeBlock = - FFSencode(AttributeEncodeBuffer, GenericAttributeFormat, - PendingAttrs, &AttributeSize); - AttrData = - new BufferFFS(AttributeEncodeBuffer, AttributeBlock, AttributeSize); + FFSencode(AttributeEncodeBuffer, GenericAttributeFormat, PendingAttrs, &AttributeSize); + AttrData = new BufferFFS(AttributeEncodeBuffer, AttributeBlock, AttributeSize); // FMdump_encoded_data(GenericAttributeFormat, AttributeBlock, // 1024000); FMfree_var_rec_elements(GenericAttributeFormat, PendingAttrs); @@ -1364,8 +1262,7 @@ BP5Serializer::TimestepInfo BP5Serializer::CloseTimestep(int timestep, std::vector BP5Serializer::CopyMetadataToContiguous( const std::vector NewMetaMetaBlocks, const std::vector &MetaEncodeBuffers, - const std::vector &AttributeEncodeBuffers, - const std::vector &DataSizes, + const std::vector &AttributeEncodeBuffers, const std::vector &DataSizes, const std::vector &WriterDataPositions) const { std::vector Ret; @@ -1421,13 +1318,11 @@ std::vector BP5Serializer::CopyMetadataToContiguous( { size_t AlignedSize = ((m.iov_len + 7) & ~0x7); helper::CopyToBuffer(Ret, Position, &AlignedSize); - helper::CopyToBuffer(Ret, Position, (const char *)m.iov_base, - m.iov_len); + helper::CopyToBuffer(Ret, Position, (const char *)m.iov_base, m.iov_len); if (m.iov_len != AlignedSize) { uint64_t zero = 0; - helper::CopyToBuffer(Ret, Position, (char *)&zero, - AlignedSize - m.iov_len); + helper::CopyToBuffer(Ret, Position, (char *)&zero, AlignedSize - m.iov_len); } } @@ -1438,13 +1333,11 @@ std::vector BP5Serializer::CopyMetadataToContiguous( { size_t AlignedSize = ((a.iov_len + 7) & ~0x7); helper::CopyToBuffer(Ret, Position, &AlignedSize); - helper::CopyToBuffer(Ret, Position, (const char *)a.iov_base, - a.iov_len); + helper::CopyToBuffer(Ret, Position, (const char *)a.iov_base, a.iov_len); if (a.iov_len != AlignedSize) { uint64_t zero = 0; - helper::CopyToBuffer(Ret, Position, (char *)&zero, - AlignedSize - a.iov_len); + helper::CopyToBuffer(Ret, Position, (char *)&zero, AlignedSize - a.iov_len); } } else @@ -1463,9 +1356,8 @@ std::vector BP5Serializer::CopyMetadataToContiguous( std::vector BP5Serializer::BreakoutContiguousMetadata( std::vector &Aggregate, const std::vector Counts, - std::vector &UniqueMetaMetaBlocks, - std::vector &AttributeBlocks, std::vector &DataSizes, - std::vector &WriterDataPositions) const + std::vector &UniqueMetaMetaBlocks, std::vector &AttributeBlocks, + std::vector &DataSizes, std::vector &WriterDataPositions) const { size_t Position = 0; std::vector MetadataBlocks; @@ -1489,15 +1381,13 @@ std::vector BP5Serializer::BreakoutContiguousMetadata( { if (o.MetaMetaIDLen != IDLen) continue; - if (std::memcmp(o.MetaMetaID, Aggregate.data() + IDPosition, - IDLen) == 0) + if (std::memcmp(o.MetaMetaID, Aggregate.data() + IDPosition, IDLen) == 0) Found = true; } if (!Found) { - MetaMetaInfoBlock New = {Aggregate.data() + InfoPosition, - InfoLen, Aggregate.data() + IDPosition, - IDLen}; + MetaMetaInfoBlock New = {Aggregate.data() + InfoPosition, InfoLen, + Aggregate.data() + IDPosition, IDLen}; UniqueMetaMetaBlocks.push_back(New); } } diff --git a/source/adios2/toolkit/format/bp5/BP5Serializer.h b/source/adios2/toolkit/format/bp5/BP5Serializer.h index 10787c8818..14c5d3f6e1 100644 --- a/source/adios2/toolkit/format/bp5/BP5Serializer.h +++ b/source/adios2/toolkit/format/bp5/BP5Serializer.h @@ -52,10 +52,9 @@ class BP5Serializer : virtual public BP5Base Buffer BackingBuffer; } AggregatedMetadataInfo; - void Marshal(void *Variable, const char *Name, const DataType Type, - size_t ElemSize, size_t DimCount, const size_t *Shape, - const size_t *Count, const size_t *Offsets, const void *Data, - bool Sync, BufferV::BufferPos *span); + void Marshal(void *Variable, const char *Name, const DataType Type, size_t ElemSize, + size_t DimCount, const size_t *Shape, const size_t *Count, const size_t *Offsets, + const void *Data, bool Sync, BufferV::BufferPos *span); /* * BP5 has two attribute marshalling methods. The first, * MarshallAttribute(), creates new MetaMetadata whenever a new @@ -76,11 +75,11 @@ class BP5Serializer : virtual public BP5Base * attributes are produced on every timestep. In the latter case, * OnetimeMarshalAttribute() is by far better. */ - void MarshalAttribute(const char *Name, const DataType Type, - size_t ElemSize, size_t ElemCount, const void *Data); + void MarshalAttribute(const char *Name, const DataType Type, size_t ElemSize, size_t ElemCount, + const void *Data); void OnetimeMarshalAttribute(const core::AttributeBase &baseAttr); - void OnetimeMarshalAttribute(const char *Name, const DataType Type, - size_t ElemCount, const void *Data); + void OnetimeMarshalAttribute(const char *Name, const DataType Type, size_t ElemCount, + const void *Data); /* * InitStep must be called with an appropriate BufferV subtype before a @@ -96,8 +95,7 @@ class BP5Serializer : virtual public BP5Base * those offsets are relative to the entire sequence of data * produced by a writer rank. */ - BufferV *ReinitStepData(BufferV *DataBuffer, - bool forceCopyDeferred = false); + BufferV *ReinitStepData(BufferV *DataBuffer, bool forceCopyDeferred = false); TimestepInfo CloseTimestep(int timestep, bool forceCopyDeferred = false); void PerformPuts(bool forceCopyDeferred = false); @@ -110,19 +108,19 @@ class BP5Serializer : virtual public BP5Base core::Engine *m_Engine = NULL; - std::vector CopyMetadataToContiguous( - const std::vector NewMetaMetaBlocks, - const std::vector &MetaEncodeBuffers, - const std::vector &AttributeEncodeBuffers, - const std::vector &DataSizes, - const std::vector &WriterDataPositions) const; + std::vector + CopyMetadataToContiguous(const std::vector NewMetaMetaBlocks, + const std::vector &MetaEncodeBuffers, + const std::vector &AttributeEncodeBuffers, + const std::vector &DataSizes, + const std::vector &WriterDataPositions) const; - std::vector BreakoutContiguousMetadata( - std::vector &Aggregate, const std::vector Counts, - std::vector &UniqueMetaMetaBlocks, - std::vector &AttributeBlocks, - std::vector &DataSizes, - std::vector &WriterDataPositions) const; + std::vector + BreakoutContiguousMetadata(std::vector &Aggregate, const std::vector Counts, + std::vector &UniqueMetaMetaBlocks, + std::vector &AttributeBlocks, + std::vector &DataSizes, + std::vector &WriterDataPositions) const; void *GetPtr(int bufferIdx, size_t posInBuffer); size_t CalcSize(const size_t Count, const size_t *Vals); @@ -207,39 +205,32 @@ class BP5Serializer : virtual public BP5Base size_t m_PriorDataBufferSizeTotal = 0; BP5WriterRec LookupWriterRec(void *Key); - BP5WriterRec CreateWriterRec(void *Variable, const char *Name, - DataType Type, size_t ElemSize, + BP5WriterRec CreateWriterRec(void *Variable, const char *Name, DataType Type, size_t ElemSize, size_t DimCount); void ValidateWriterRec(BP5WriterRec Rec, void *Variable); void CollectFinalShapeValues(); void RecalcMarshalStorageSize(); void RecalcAttributeStorageSize(); - void AddSimpleField(FMFieldList *FieldP, int *CountP, const char *Name, - const char *Type, int ElementSize); - void AddField(FMFieldList *FieldP, int *CountP, const char *Name, - const DataType Type, int ElementSize); - void AddFixedArrayField(FMFieldList *FieldP, int *CountP, const char *Name, - const DataType Type, int ElementSize, int DimCount); - void AddVarArrayField(FMFieldList *FieldP, int *CountP, const char *Name, - const DataType Type, int ElementSize, - char *SizeField); + void AddSimpleField(FMFieldList *FieldP, int *CountP, const char *Name, const char *Type, + int ElementSize); + void AddField(FMFieldList *FieldP, int *CountP, const char *Name, const DataType Type, + int ElementSize); + void AddFixedArrayField(FMFieldList *FieldP, int *CountP, const char *Name, const DataType Type, + int ElementSize, int DimCount); + void AddVarArrayField(FMFieldList *FieldP, int *CountP, const char *Name, const DataType Type, + int ElementSize, char *SizeField); void AddDoubleArrayField(FMFieldList *FieldP, int *CountP, const char *Name, - const DataType Type, int ElementSize, - char *SizeField); - char *BuildVarName(const char *base_name, const ShapeID Shape, - const int type, const int element_size); - void BreakdownVarName(const char *Name, char **base_name_p, int *type_p, - int *element_size_p); - char *BuildArrayDimsName(const char *base_name, const int type, - const int element_size); - char *BuildArrayDBCountName(const char *base_name, const int type, - const int element_size); - char *BuildArrayBlockCountName(const char *base_name, const int type, - const int element_size); + const DataType Type, int ElementSize, char *SizeField); + char *BuildVarName(const char *base_name, const ShapeID Shape, const int type, + const int element_size); + void BreakdownVarName(const char *Name, char **base_name_p, int *type_p, int *element_size_p); + char *BuildArrayDimsName(const char *base_name, const int type, const int element_size); + char *BuildArrayDBCountName(const char *base_name, const int type, const int element_size); + char *BuildArrayBlockCountName(const char *base_name, const int type, const int element_size); char *TranslateADIOS2Type2FFS(const DataType Type); size_t *CopyDims(const size_t Count, const size_t *Vals); - size_t *AppendDims(size_t *OldDims, const size_t OldCount, - const size_t Count, const size_t *Vals); + size_t *AppendDims(size_t *OldDims, const size_t OldCount, const size_t Count, + const size_t *Vals); void DumpDeferredBlocks(bool forceCopyDeferred = false); void VariableStatsEnabled(void *Variable); diff --git a/source/adios2/toolkit/format/buffer/Buffer.cpp b/source/adios2/toolkit/format/buffer/Buffer.cpp index 8fefc7168b..4bed7df10d 100644 --- a/source/adios2/toolkit/format/buffer/Buffer.cpp +++ b/source/adios2/toolkit/format/buffer/Buffer.cpp @@ -24,15 +24,14 @@ Buffer::Buffer(const std::string type, const size_t fixedSize) void Buffer::Resize(const size_t size, const std::string hint) { helper::Throw("Toolkit", "format::Buffer", "Resize", - "buffer memory of type " + m_Type + - " can't call Resize " + hint); + "buffer memory of type " + m_Type + " can't call Resize " + + hint); } void Buffer::Reset(const bool resetAbsolutePosition, const bool zeroInitialize) { helper::Throw("Toolkit", "format::Buffer", "Reset", - "buffer memory of type " + m_Type + - " can't call Reset"); + "buffer memory of type " + m_Type + " can't call Reset"); } char *Buffer::Data() noexcept { return nullptr; } @@ -51,8 +50,7 @@ size_t Buffer::GetAvailableSize() const void Buffer::Delete() { helper::Throw("Toolkit", "format::Buffer", "Delete", - "buffer memory of type " + m_Type + - " can't call Delete"); + "buffer memory of type " + m_Type + " can't call Delete"); } } // end namespace format diff --git a/source/adios2/toolkit/format/buffer/Buffer.h b/source/adios2/toolkit/format/buffer/Buffer.h index c84037d168..65d7e5812d 100644 --- a/source/adios2/toolkit/format/buffer/Buffer.h +++ b/source/adios2/toolkit/format/buffer/Buffer.h @@ -44,8 +44,7 @@ class Buffer * @param resetAbsolutePosition true: reset m_AbsolutePosition = 0 * @param zeroInitialize populate current buffer contents with '\0' */ - virtual void Reset(const bool resetAbsolutePosition, - const bool zeroInitialize); + virtual void Reset(const bool resetAbsolutePosition, const bool zeroInitialize); virtual size_t GetAvailableSize() const; diff --git a/source/adios2/toolkit/format/buffer/BufferV.cpp b/source/adios2/toolkit/format/buffer/BufferV.cpp index 81cb8525ff..5d10fda70a 100644 --- a/source/adios2/toolkit/format/buffer/BufferV.cpp +++ b/source/adios2/toolkit/format/buffer/BufferV.cpp @@ -16,10 +16,9 @@ namespace adios2 namespace format { -BufferV::BufferV(const std::string type, const bool AlwaysCopy, - const size_t MemAlign, const size_t MemBlockSize) -: m_Type(type), m_MemAlign(MemAlign), m_MemBlockSize(MemBlockSize), - m_AlwaysCopy(AlwaysCopy) +BufferV::BufferV(const std::string type, const bool AlwaysCopy, const size_t MemAlign, + const size_t MemBlockSize) +: m_Type(type), m_MemAlign(MemAlign), m_MemBlockSize(MemBlockSize), m_AlwaysCopy(AlwaysCopy) { } diff --git a/source/adios2/toolkit/format/buffer/BufferV.h b/source/adios2/toolkit/format/buffer/BufferV.h index 37fdadcb17..0436ae363d 100644 --- a/source/adios2/toolkit/format/buffer/BufferV.h +++ b/source/adios2/toolkit/format/buffer/BufferV.h @@ -27,8 +27,8 @@ class BufferV uint64_t Size() noexcept; - BufferV(const std::string type, const bool AlwaysCopy = false, - const size_t MemAlign = 1, const size_t MemBlockSize = 1); + BufferV(const std::string type, const bool AlwaysCopy = false, const size_t MemAlign = 1, + const size_t MemBlockSize = 1); virtual ~BufferV(); virtual std::vector DataVec() noexcept = 0; @@ -38,8 +38,7 @@ class BufferV */ virtual void Reset(); - virtual size_t AddToVec(const size_t size, const void *buf, size_t align, - bool CopyReqd, + virtual size_t AddToVec(const size_t size, const void *buf, size_t align, bool CopyReqd, MemorySpace MemSpace = MemorySpace::Host) = 0; struct BufferPos @@ -58,8 +57,7 @@ class BufferV * during execution (even after reallocs) */ virtual BufferPos Allocate(const size_t size, size_t align) = 0; - virtual void DownsizeLastAlloc(const size_t oldSize, - const size_t newSize) = 0; + virtual void DownsizeLastAlloc(const size_t oldSize, const size_t newSize) = 0; void AlignBuffer(const size_t align); diff --git a/source/adios2/toolkit/format/buffer/chunk/ChunkV.cpp b/source/adios2/toolkit/format/buffer/chunk/ChunkV.cpp index 27cb11e334..30fb427fe0 100644 --- a/source/adios2/toolkit/format/buffer/chunk/ChunkV.cpp +++ b/source/adios2/toolkit/format/buffer/chunk/ChunkV.cpp @@ -21,9 +21,8 @@ namespace adios2 namespace format { -ChunkV::ChunkV(const std::string type, const bool AlwaysCopy, - const size_t MemAlign, const size_t MemBlockSize, - const size_t ChunkSize) +ChunkV::ChunkV(const std::string type, const bool AlwaysCopy, const size_t MemAlign, + const size_t MemBlockSize, const size_t ChunkSize) : BufferV(type, AlwaysCopy, MemAlign, MemBlockSize), m_ChunkSize(ChunkSize) { } @@ -72,8 +71,8 @@ size_t ChunkV::ChunkAlloc(Chunk &v, const size_t size) } } -size_t ChunkV::AddToVec(const size_t size, const void *buf, size_t align, - bool CopyReqd, MemorySpace MemSpace) +size_t ChunkV::AddToVec(const size_t size, const void *buf, size_t align, bool CopyReqd, + MemorySpace MemSpace) { AlignBuffer(align); // may call back AddToVec recursively size_t retOffset = CurOffset; @@ -98,8 +97,7 @@ size_t ChunkV::AddToVec(const size_t size, const void *buf, size_t align, // internal bool AppendPossible = DataV.size() && !DataV.back().External && - (m_TailChunk->Ptr + m_TailChunkPos - DataV.back().Size == - DataV.back().Base); + (m_TailChunk->Ptr + m_TailChunkPos - DataV.back().Size == DataV.back().Base); if (AppendPossible && (m_TailChunkPos + size > m_ChunkSize)) { @@ -152,8 +150,7 @@ size_t ChunkV::AddToVec(const size_t size, const void *buf, size_t align, return retOffset; } -void ChunkV::CopyDataToBuffer(const size_t size, const void *buf, size_t pos, - MemorySpace MemSpace) +void ChunkV::CopyDataToBuffer(const size_t size, const void *buf, size_t pos, MemorySpace MemSpace) { #ifdef ADIOS2_HAVE_GPU_SUPPORT if (MemSpace == MemorySpace::GPU) @@ -180,8 +177,7 @@ BufferV::BufferPos ChunkV::Allocate(const size_t size, size_t align) // internal bool AppendPossible = DataV.size() && !DataV.back().External && - (m_TailChunk->Ptr + m_TailChunkPos - DataV.back().Size == - DataV.back().Base); + (m_TailChunk->Ptr + m_TailChunkPos - DataV.back().Size == DataV.back().Base); if (AppendPossible && (m_TailChunkPos + size > m_ChunkSize)) { @@ -245,13 +241,11 @@ void *ChunkV::GetPtr(int bufferIdx, size_t posInBuffer) { return nullptr; } - else if (static_cast(bufferIdx) > DataV.size() || - DataV[bufferIdx].External) + else if (static_cast(bufferIdx) > DataV.size() || DataV[bufferIdx].External) { helper::Throw( "Toolkit", "format::ChunkV", "GetPtr", - "ChunkV::GetPtr(" + std::to_string(bufferIdx) + ", " + - std::to_string(posInBuffer) + + "ChunkV::GetPtr(" + std::to_string(bufferIdx) + ", " + std::to_string(posInBuffer) + ") refers to a non-existing or deferred memory chunk."); return nullptr; } diff --git a/source/adios2/toolkit/format/buffer/chunk/ChunkV.h b/source/adios2/toolkit/format/buffer/chunk/ChunkV.h index 0ee3974974..ef65c08665 100644 --- a/source/adios2/toolkit/format/buffer/chunk/ChunkV.h +++ b/source/adios2/toolkit/format/buffer/chunk/ChunkV.h @@ -25,15 +25,13 @@ class ChunkV : public BufferV const size_t m_ChunkSize; - ChunkV(const std::string type, const bool AlwaysCopy = false, - const size_t MemAlign = 1, const size_t MemBlockSize = 1, - const size_t ChunkSize = DefaultBufferChunkSize); + ChunkV(const std::string type, const bool AlwaysCopy = false, const size_t MemAlign = 1, + const size_t MemBlockSize = 1, const size_t ChunkSize = DefaultBufferChunkSize); virtual ~ChunkV(); virtual std::vector DataVec() noexcept; - virtual size_t AddToVec(const size_t size, const void *buf, size_t align, - bool CopyReqd, + virtual size_t AddToVec(const size_t size, const void *buf, size_t align, bool CopyReqd, MemorySpace MemSpace = MemorySpace::Host); virtual BufferPos Allocate(const size_t size, size_t align); @@ -41,8 +39,7 @@ class ChunkV : public BufferV virtual void *GetPtr(int bufferIdx, size_t posInBuffer); - void CopyDataToBuffer(const size_t size, const void *buf, size_t pos, - MemorySpace MemSpace); + void CopyDataToBuffer(const size_t size, const void *buf, size_t pos, MemorySpace MemSpace); private: struct Chunk diff --git a/source/adios2/toolkit/format/buffer/ffs/BufferFFS.cpp b/source/adios2/toolkit/format/buffer/ffs/BufferFFS.cpp index 2268d40894..d2b379d337 100644 --- a/source/adios2/toolkit/format/buffer/ffs/BufferFFS.cpp +++ b/source/adios2/toolkit/format/buffer/ffs/BufferFFS.cpp @@ -15,8 +15,7 @@ namespace adios2 namespace format { -BufferFFS::BufferFFS(FFSBuffer Buf, void *data, size_t len) -: Buffer("BufferFFS", len) +BufferFFS::BufferFFS(FFSBuffer Buf, void *data, size_t len) : Buffer("BufferFFS", len) { m_buffer = Buf; m_data = data; diff --git a/source/adios2/toolkit/format/buffer/ffs/BufferSTL.tcc b/source/adios2/toolkit/format/buffer/ffs/BufferSTL.tcc index 6b185f6b60..15ebb4ed6f 100644 --- a/source/adios2/toolkit/format/buffer/ffs/BufferSTL.tcc +++ b/source/adios2/toolkit/format/buffer/ffs/BufferSTL.tcc @@ -29,8 +29,7 @@ size_t BufferSTL::Align() const noexcept { // std::align implementation from llvm libc++ // needed due to bug in gcc 4.8 - auto lf_align = [](const size_t alignment, const size_t size, void *&ptr, - size_t &space) { + auto lf_align = [](const size_t alignment, const size_t size, void *&ptr, size_t &space) { if (size <= space) { const char *p1 = static_cast(ptr); @@ -44,8 +43,8 @@ size_t BufferSTL::Align() const noexcept } }; - void *currentAddress = reinterpret_cast( - const_cast(m_Buffer.data() + m_Position)); + void *currentAddress = + reinterpret_cast(const_cast(m_Buffer.data() + m_Position)); size_t size = GetAvailableSize(); lf_align(alignof(T), sizeof(T), currentAddress, size); return GetAvailableSize() - size; diff --git a/source/adios2/toolkit/format/buffer/heap/BufferSTL.cpp b/source/adios2/toolkit/format/buffer/heap/BufferSTL.cpp index f418dd01fd..518d23bf5d 100644 --- a/source/adios2/toolkit/format/buffer/heap/BufferSTL.cpp +++ b/source/adios2/toolkit/format/buffer/heap/BufferSTL.cpp @@ -40,13 +40,11 @@ void BufferSTL::Resize(const size_t size, const std::string hint) // catch a bad_alloc helper::ThrowNested( "Toolkit::Format", "buffer::heap::BufferSTL", "BufferSystemV", - "buffer overflow when resizing to " + std::to_string(size) + - " bytes, " + hint); + "buffer overflow when resizing to " + std::to_string(size) + " bytes, " + hint); } } -void BufferSTL::Reset(const bool resetAbsolutePosition, - const bool zeroInitialize) +void BufferSTL::Reset(const bool resetAbsolutePosition, const bool zeroInitialize) { m_Position = 0; if (resetAbsolutePosition) @@ -76,13 +74,9 @@ void BufferSTL::Reset(const bool resetAbsolutePosition, } } -size_t BufferSTL::GetAvailableSize() const -{ - return m_Buffer.size() - m_Position; -} +size_t BufferSTL::GetAvailableSize() const { return m_Buffer.size() - m_Position; } -#define declare_template_instantiation(T) \ - template size_t BufferSTL::Align() const noexcept; +#define declare_template_instantiation(T) template size_t BufferSTL::Align() const noexcept; ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation diff --git a/source/adios2/toolkit/format/buffer/heap/BufferSTL.h b/source/adios2/toolkit/format/buffer/heap/BufferSTL.h index ba42e85a39..b291d2a3b8 100644 --- a/source/adios2/toolkit/format/buffer/heap/BufferSTL.h +++ b/source/adios2/toolkit/format/buffer/heap/BufferSTL.h @@ -33,8 +33,7 @@ class BufferSTL : public Buffer void Resize(const size_t size, const std::string hint) final; - void Reset(const bool resetAbsolutePosition, - const bool zeroInitialize) final; + void Reset(const bool resetAbsolutePosition, const bool zeroInitialize) final; size_t GetAvailableSize() const final; diff --git a/source/adios2/toolkit/format/buffer/heap/BufferSTL.tcc b/source/adios2/toolkit/format/buffer/heap/BufferSTL.tcc index 6b185f6b60..15ebb4ed6f 100644 --- a/source/adios2/toolkit/format/buffer/heap/BufferSTL.tcc +++ b/source/adios2/toolkit/format/buffer/heap/BufferSTL.tcc @@ -29,8 +29,7 @@ size_t BufferSTL::Align() const noexcept { // std::align implementation from llvm libc++ // needed due to bug in gcc 4.8 - auto lf_align = [](const size_t alignment, const size_t size, void *&ptr, - size_t &space) { + auto lf_align = [](const size_t alignment, const size_t size, void *&ptr, size_t &space) { if (size <= space) { const char *p1 = static_cast(ptr); @@ -44,8 +43,8 @@ size_t BufferSTL::Align() const noexcept } }; - void *currentAddress = reinterpret_cast( - const_cast(m_Buffer.data() + m_Position)); + void *currentAddress = + reinterpret_cast(const_cast(m_Buffer.data() + m_Position)); size_t size = GetAvailableSize(); lf_align(alignof(T), sizeof(T), currentAddress, size); return GetAvailableSize() - size; diff --git a/source/adios2/toolkit/format/buffer/ipc/BufferSystemV.cpp b/source/adios2/toolkit/format/buffer/ipc/BufferSystemV.cpp index aeb008a513..5baad5234a 100644 --- a/source/adios2/toolkit/format/buffer/ipc/BufferSystemV.cpp +++ b/source/adios2/toolkit/format/buffer/ipc/BufferSystemV.cpp @@ -30,24 +30,23 @@ BufferSystemV::BufferSystemV(const size_t fixedSize, const std::string &name, { assert(projectID > 0); // for the developer key_t key = ftok(name.c_str(), static_cast(projectID)); - m_ShmID = shmget(key, static_cast(fixedSize), - IPC_CREAT | 0666); + m_ShmID = shmget(key, static_cast(fixedSize), IPC_CREAT | 0666); if (m_ShmID == -1) { - helper::Throw( - "Toolkit", "format::buffer::ipc::BufferSystemV", "BufferSystemV", - "could not create shared memory buffer of size " + - std::to_string(fixedSize) + " with shmget"); + helper::Throw("Toolkit", "format::buffer::ipc::BufferSystemV", + "BufferSystemV", + "could not create shared memory buffer of size " + + std::to_string(fixedSize) + " with shmget"); } void *data = shmat(m_ShmID, nullptr, 0); int *status = reinterpret_cast(data); if (*status == -1) { - helper::Throw( - "Toolkit", "format::buffer::ipc::BufferSystemV", "BufferSystemV", - "could not attach shared memory buffer " - "to address with shmat"); + helper::Throw("Toolkit", "format::buffer::ipc::BufferSystemV", + "BufferSystemV", + "could not attach shared memory buffer " + "to address with shmat"); } m_Data = static_cast(data); } @@ -66,8 +65,7 @@ char *BufferSystemV::Data() noexcept { return m_Data; } const char *BufferSystemV::Data() const noexcept { return m_Data; } -void BufferSystemV::Reset(const bool resetAbsolutePosition, - const bool zeroInitialize) +void BufferSystemV::Reset(const bool resetAbsolutePosition, const bool zeroInitialize) { m_Position = 0; if (resetAbsolutePosition) diff --git a/source/adios2/toolkit/format/buffer/ipc/BufferSystemV.h b/source/adios2/toolkit/format/buffer/ipc/BufferSystemV.h index 38e174c91b..c553db62d3 100644 --- a/source/adios2/toolkit/format/buffer/ipc/BufferSystemV.h +++ b/source/adios2/toolkit/format/buffer/ipc/BufferSystemV.h @@ -21,8 +21,8 @@ namespace format class BufferSystemV : public Buffer { public: - BufferSystemV(const size_t fixedSize, const std::string &name, - const unsigned int projectID, const bool remove); + BufferSystemV(const size_t fixedSize, const std::string &name, const unsigned int projectID, + const bool remove); ~BufferSystemV(); @@ -30,8 +30,7 @@ class BufferSystemV : public Buffer const char *Data() const noexcept final; - void Reset(const bool resetAbsolutePosition, - const bool zeroInitialize) final; + void Reset(const bool resetAbsolutePosition, const bool zeroInitialize) final; private: /** shared memory segment ID from shmget */ diff --git a/source/adios2/toolkit/format/buffer/malloc/MallocV.cpp b/source/adios2/toolkit/format/buffer/malloc/MallocV.cpp index 0d826933ff..2ba21dca80 100644 --- a/source/adios2/toolkit/format/buffer/malloc/MallocV.cpp +++ b/source/adios2/toolkit/format/buffer/malloc/MallocV.cpp @@ -19,11 +19,10 @@ namespace adios2 namespace format { -MallocV::MallocV(const std::string type, const bool AlwaysCopy, - const size_t MemAlign, const size_t MemBlockSize, - size_t InitialBufferSize, double GrowthFactor) -: BufferV(type, AlwaysCopy, MemAlign, MemBlockSize), - m_InitialBufferSize(InitialBufferSize), m_GrowthFactor(GrowthFactor) +MallocV::MallocV(const std::string type, const bool AlwaysCopy, const size_t MemAlign, + const size_t MemBlockSize, size_t InitialBufferSize, double GrowthFactor) +: BufferV(type, AlwaysCopy, MemAlign, MemBlockSize), m_InitialBufferSize(InitialBufferSize), + m_GrowthFactor(GrowthFactor) { } @@ -40,8 +39,8 @@ void MallocV::Reset() DataV.clear(); } -size_t MallocV::AddToVec(const size_t size, const void *buf, size_t align, - bool CopyReqd, MemorySpace MemSpace) +size_t MallocV::AddToVec(const size_t size, const void *buf, size_t align, bool CopyReqd, + MemorySpace MemSpace) { AlignBuffer(align); // may call back AddToVec recursively size_t retOffset = CurOffset; diff --git a/source/adios2/toolkit/format/buffer/malloc/MallocV.h b/source/adios2/toolkit/format/buffer/malloc/MallocV.h index 45485a2100..6553271099 100644 --- a/source/adios2/toolkit/format/buffer/malloc/MallocV.h +++ b/source/adios2/toolkit/format/buffer/malloc/MallocV.h @@ -23,9 +23,8 @@ class MallocV : public BufferV public: uint64_t Size() noexcept; - MallocV(const std::string type, const bool AlwaysCopy = false, - const size_t MemAlign = 1, const size_t MemBlockSize = 1, - size_t InitialBufferSize = DefaultInitialBufferSize, + MallocV(const std::string type, const bool AlwaysCopy = false, const size_t MemAlign = 1, + const size_t MemBlockSize = 1, size_t InitialBufferSize = DefaultInitialBufferSize, double GrowthFactor = DefaultBufferGrowthFactor); virtual ~MallocV(); @@ -36,8 +35,7 @@ class MallocV : public BufferV */ virtual void Reset(); - virtual size_t AddToVec(const size_t size, const void *buf, size_t align, - bool CopyReqd, + virtual size_t AddToVec(const size_t size, const void *buf, size_t align, bool CopyReqd, MemorySpace MemSpace = MemorySpace::Host); virtual BufferPos Allocate(const size_t size, size_t align); diff --git a/source/adios2/toolkit/format/dataman/DataManSerializer.cpp b/source/adios2/toolkit/format/dataman/DataManSerializer.cpp index e6e20fdb16..daa72cfb9c 100644 --- a/source/adios2/toolkit/format/dataman/DataManSerializer.cpp +++ b/source/adios2/toolkit/format/dataman/DataManSerializer.cpp @@ -18,10 +18,8 @@ namespace adios2 namespace format { -DataManSerializer::DataManSerializer(helper::Comm const &comm, - const bool isRowMajor) -: m_IsRowMajor(isRowMajor), m_IsLittleEndian(helper::IsLittleEndian()), - m_Comm(comm) +DataManSerializer::DataManSerializer(helper::Comm const &comm, const bool isRowMajor) +: m_IsRowMajor(isRowMajor), m_IsLittleEndian(helper::IsLittleEndian()), m_Comm(comm) { m_MpiRank = m_Comm.Rank(); m_MpiSize = m_Comm.Size(); @@ -60,12 +58,11 @@ VecPtr DataManSerializer::GetLocalPack() m_TimeStampsMutex.unlock(); auto metapack = SerializeJson(m_MetadataJson); size_t metasize = metapack->size(); - (reinterpret_cast(m_LocalBuffer->data()))[0] = - m_LocalBuffer->size(); + (reinterpret_cast(m_LocalBuffer->data()))[0] = m_LocalBuffer->size(); (reinterpret_cast(m_LocalBuffer->data()))[1] = metasize; m_LocalBuffer->resize(m_LocalBuffer->size() + metasize); - std::memcpy(m_LocalBuffer->data() + m_LocalBuffer->size() - metasize, - metapack->data(), metasize); + std::memcpy(m_LocalBuffer->data() + m_LocalBuffer->size() - metasize, metapack->data(), + metasize); return m_LocalBuffer; } @@ -87,11 +84,11 @@ void DataManSerializer::PutAttributes(core::IO &io) if (type == DataType::None) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - core::Attribute &attribute = *io.InquireAttribute(name); \ - PutAttribute(attribute); \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + core::Attribute &attribute = *io.InquireAttribute(name); \ + PutAttribute(attribute); \ } ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_type) #undef declare_type @@ -121,31 +118,28 @@ void DataManSerializer::GetAttributes(core::IO &io) std::lock_guard lStaticDataJson(m_StaticDataJsonMutex); for (const auto &staticVar : m_StaticDataJson["S"]) { - const DataType type( - helper::GetDataTypeFromString(staticVar["Y"].get())); + const DataType type(helper::GetDataTypeFromString(staticVar["Y"].get())); if (type == DataType::None) { } -#define declare_type(T) \ - else if (type == helper::GetDataType()) \ - { \ - const auto &attributes = io.GetAttributes(); \ - auto it = attributes.find(staticVar["N"].get()); \ - if (it == attributes.end()) \ - { \ - if (staticVar["V"].get()) \ - { \ - io.DefineAttribute(staticVar["N"].get(), \ - staticVar["G"].get()); \ - } \ - else \ - { \ - io.DefineAttribute( \ - staticVar["N"].get(), \ - staticVar["G"].get>().data(), \ - staticVar["G"].get>().size()); \ - } \ - } \ +#define declare_type(T) \ + else if (type == helper::GetDataType()) \ + { \ + const auto &attributes = io.GetAttributes(); \ + auto it = attributes.find(staticVar["N"].get()); \ + if (it == attributes.end()) \ + { \ + if (staticVar["V"].get()) \ + { \ + io.DefineAttribute(staticVar["N"].get(), staticVar["G"].get()); \ + } \ + else \ + { \ + io.DefineAttribute(staticVar["N"].get(), \ + staticVar["G"].get>().data(), \ + staticVar["G"].get>().size()); \ + } \ + } \ } ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_type) #undef declare_type @@ -217,8 +211,8 @@ void DataManSerializer::JsonToVarMap(nlohmann::json &metaJ, VecPtr pack) } m_DeserializedBlocksForStepMutex.unlock(); - for (auto rankMapIt = stepMapIt.value().begin(); - rankMapIt != stepMapIt.value().end(); ++rankMapIt) + for (auto rankMapIt = stepMapIt.value().begin(); rankMapIt != stepMapIt.value().end(); + ++rankMapIt) { for (const auto &varBlock : rankMapIt.value()) { @@ -231,15 +225,13 @@ void DataManSerializer::JsonToVarMap(nlohmann::json &metaJ, VecPtr pack) var.start = varBlock["O"].get(); var.count = varBlock["C"].get(); var.size = varBlock["I"].get(); - var.type = helper::GetDataTypeFromString( - varBlock["Y"].get()); + var.type = helper::GetDataTypeFromString(varBlock["Y"].get()); var.rank = stoi(rankMapIt.key()); } catch (std::exception &e) { helper::Throw( - "Toolkit::Format", "dataman::DataManSerializer", - "JsonToVarMap", + "Toolkit::Format", "dataman::DataManSerializer", "JsonToVarMap", "missing compulsory properties in JSON metadata"); } @@ -312,8 +304,7 @@ void DataManSerializer::JsonToVarMap(nlohmann::json &metaJ, VecPtr pack) if (m_DataManVarMap[var.step] == nullptr) { - m_DataManVarMap[var.step] = - std::make_shared>(); + m_DataManVarMap[var.step] = std::make_shared>(); } m_DataManVarMap[var.step]->emplace_back(std::move(var)); } @@ -339,8 +330,7 @@ void DataManSerializer::PutPack(const VecPtr data, const bool useThread) { m_PutPackThread.join(); } - m_PutPackThread = - std::thread(&DataManSerializer::PutPackThread, this, data); + m_PutPackThread = std::thread(&DataManSerializer::PutPackThread, this, data); } else { @@ -355,8 +345,7 @@ int DataManSerializer::PutPackThread(const VecPtr data) { return -1; } - uint64_t metaPosition = - (reinterpret_cast(data->data()))[0]; + uint64_t metaPosition = (reinterpret_cast(data->data()))[0]; uint64_t metaSize = (reinterpret_cast(data->data()))[1]; nlohmann::json j = DeserializeJson(data->data() + metaPosition, metaSize); JsonToVarMap(j, data); @@ -371,8 +360,7 @@ void DataManSerializer::Erase(const size_t step, const bool allPreviousSteps) if (allPreviousSteps) { std::vector its; - for (auto it = m_DataManVarMap.begin(); it != m_DataManVarMap.end(); - ++it) + for (auto it = m_DataManVarMap.begin(); it != m_DataManVarMap.end(); ++it) { if (it->first <= step) { @@ -381,17 +369,15 @@ void DataManSerializer::Erase(const size_t step, const bool allPreviousSteps) } for (auto it : its) { - Log(5, - "DataManSerializer::Erase() erasing step " + - std::to_string(it->first), - true, true); + Log(5, "DataManSerializer::Erase() erasing step " + std::to_string(it->first), true, + true); m_DataManVarMap.erase(it); } if (m_AggregatedMetadataJson != nullptr) { std::vector jits; - for (auto it = m_AggregatedMetadataJson.begin(); - it != m_AggregatedMetadataJson.end(); ++it) + for (auto it = m_AggregatedMetadataJson.begin(); it != m_AggregatedMetadataJson.end(); + ++it) { if (stoull(it.key()) < step) { @@ -406,9 +392,7 @@ void DataManSerializer::Erase(const size_t step, const bool allPreviousSteps) } else { - Log(5, - "DataManSerializer::Erase() erasing step " + std::to_string(step), - true, true); + Log(5, "DataManSerializer::Erase() erasing step " + std::to_string(step), true, true); m_DataManVarMap.erase(step); if (m_AggregatedMetadataJson != nullptr) { @@ -453,14 +437,12 @@ VecPtr DataManSerializer::SerializeJson(const nlohmann::json &message) { helper::Throw( "Toolkit::Format", "dataman::DataManSerializer", "SerializeJson", - "json serialization method " + m_UseJsonSerialization + - " not valid"); + "json serialization method " + m_UseJsonSerialization + " not valid"); } return pack; } -nlohmann::json DataManSerializer::DeserializeJson(const char *start, - size_t size) +nlohmann::json DataManSerializer::DeserializeJson(const char *start, size_t size) { PERFSTUBS_SCOPED_TIMER_FUNC(); if (m_Verbosity >= 200) @@ -476,9 +458,8 @@ nlohmann::json DataManSerializer::DeserializeJson(const char *start, if (start == nullptr or start == NULL or size == 0) { - helper::Throw( - "Toolkit::Format", "dataman::DataManSerializer", "DeserializeJson", - "received invalid message"); + helper::Throw("Toolkit::Format", "dataman::DataManSerializer", + "DeserializeJson", "received invalid message"); } nlohmann::json message; if (m_UseJsonSerialization == "msgpack") @@ -501,22 +482,17 @@ nlohmann::json DataManSerializer::DeserializeJson(const char *start, { helper::Throw( "Toolkit::Format", "dataman::DataManSerializer", "DeserializeJson", - "json serialization method " + m_UseJsonSerialization + - " not valid"); + "json serialization method " + m_UseJsonSerialization + " not valid"); } return message; } -void DataManSerializer::SetDestination(const std::string &dest) -{ - m_Destination = dest; -} +void DataManSerializer::SetDestination(const std::string &dest) { m_Destination = dest; } std::string DataManSerializer::GetDestination() { return m_Destination; } -bool DataManSerializer::StepHasMinimumBlocks(const size_t step, - const int requireMinimumBlocks) +bool DataManSerializer::StepHasMinimumBlocks(const size_t step, const int requireMinimumBlocks) { std::lock_guard l(m_DeserializedBlocksForStepMutex); auto it = m_DeserializedBlocksForStep.find(step); @@ -530,9 +506,9 @@ bool DataManSerializer::StepHasMinimumBlocks(const size_t step, return false; } -DmvVecPtr DataManSerializer::GetEarliestLatestStep( - int64_t ¤tStep, const int requireMinimumBlocks, - const float timeoutSeconds, const bool latest) +DmvVecPtr DataManSerializer::GetEarliestLatestStep(int64_t ¤tStep, + const int requireMinimumBlocks, + const float timeoutSeconds, const bool latest) { PERFSTUBS_SCOPED_TIMER_FUNC(); @@ -593,8 +569,7 @@ DmvVecPtr DataManSerializer::GetEarliestLatestStep( } auto now_time = std::chrono::system_clock::now(); - auto duration = std::chrono::duration_cast( - now_time - start_time); + auto duration = std::chrono::duration_cast(now_time - start_time); if (duration.count() > timeoutSeconds and timeoutSeconds > 0) { return nullptr; @@ -602,8 +577,8 @@ DmvVecPtr DataManSerializer::GetEarliestLatestStep( } } -void DataManSerializer::Log(const int level, const std::string &message, - const bool mpi, const bool endline) +void DataManSerializer::Log(const int level, const std::string &message, const bool mpi, + const bool endline) { PERFSTUBS_SCOPED_TIMER_FUNC(); const int rank = m_Comm.World().Rank(); @@ -622,18 +597,16 @@ void DataManSerializer::Log(const int level, const std::string &message, } } -void DataManSerializer::PutData( - const std::string *inputData, const std::string &varName, - const Dims &varShape, const Dims &varStart, const Dims &varCount, - const Dims &varMemStart, const Dims &varMemCount, const std::string &doid, - const size_t step, const int rank, const std::string &address, - const std::vector> &ops, VecPtr localBuffer, - JsonPtr metadataJson) +void DataManSerializer::PutData(const std::string *inputData, const std::string &varName, + const Dims &varShape, const Dims &varStart, const Dims &varCount, + const Dims &varMemStart, const Dims &varMemCount, + const std::string &doid, const size_t step, const int rank, + const std::string &address, + const std::vector> &ops, + VecPtr localBuffer, JsonPtr metadataJson) { PERFSTUBS_SCOPED_TIMER_FUNC(); - Log(1, - "DataManSerializer::PutData begin with Step " + std::to_string(step) + - " Var " + varName, + Log(1, "DataManSerializer::PutData begin with Step " + std::to_string(step) + " Var " + varName, true, true); if (localBuffer == nullptr) @@ -673,30 +646,25 @@ void DataManSerializer::PutData( localBuffer->resize(localBuffer->size() + inputData->size()); - std::memcpy(localBuffer->data() + localBuffer->size() - inputData->size(), - inputData->data(), inputData->size()); + std::memcpy(localBuffer->data() + localBuffer->size() - inputData->size(), inputData->data(), + inputData->size()); if (metadataJson == nullptr) { - m_MetadataJson[std::to_string(step)][std::to_string(rank)].emplace_back( - std::move(metaj)); + m_MetadataJson[std::to_string(step)][std::to_string(rank)].emplace_back(std::move(metaj)); } else { - (*metadataJson)[std::to_string(step)][std::to_string(rank)] - .emplace_back(std::move(metaj)); + (*metadataJson)[std::to_string(step)][std::to_string(rank)].emplace_back(std::move(metaj)); } - Log(1, - "DataManSerializer::PutData end with Step " + std::to_string(step) + - " Var " + varName, + Log(1, "DataManSerializer::PutData end with Step " + std::to_string(step) + " Var " + varName, true, true); } template <> -int DataManSerializer::GetData(std::string *outputData, - const std::string &varName, const Dims &varStart, - const Dims &varCount, const size_t step, +int DataManSerializer::GetData(std::string *outputData, const std::string &varName, + const Dims &varStart, const Dims &varCount, const size_t step, const Dims &varMemStart, const Dims &varMemCount) { PERFSTUBS_SCOPED_TIMER_FUNC(); diff --git a/source/adios2/toolkit/format/dataman/DataManSerializer.h b/source/adios2/toolkit/format/dataman/DataManSerializer.h index 44647ccbd2..9adc515368 100644 --- a/source/adios2/toolkit/format/dataman/DataManSerializer.h +++ b/source/adios2/toolkit/format/dataman/DataManSerializer.h @@ -75,8 +75,7 @@ struct DataManVar using DmvVecPtr = std::shared_ptr>; using DmvVecPtrMap = std::unordered_map; -using OperatorMap = - std::unordered_map>; +using OperatorMap = std::unordered_map>; class DataManSerializer { @@ -93,28 +92,26 @@ class DataManSerializer void PutAttributes(core::IO &io); // put a variable for writer - void PutData(const std::string *inputData, const std::string &varName, - const Dims &varShape, const Dims &varStart, - const Dims &varCount, const Dims &varMemStart, - const Dims &varMemCount, const std::string &doid, - const size_t step, const int rank, const std::string &address, + void PutData(const std::string *inputData, const std::string &varName, const Dims &varShape, + const Dims &varStart, const Dims &varCount, const Dims &varMemStart, + const Dims &varMemCount, const std::string &doid, const size_t step, + const int rank, const std::string &address, const std::vector> &ops, VecPtr localBuffer = nullptr, JsonPtr metadataJson = nullptr); template - void PutData(const T *inputData, const std::string &varName, - const Dims &varShape, const Dims &varStart, - const Dims &varCount, const Dims &varMemStart, - const Dims &varMemCount, const std::string &doid, - const size_t step, const int rank, const std::string &address, + void PutData(const T *inputData, const std::string &varName, const Dims &varShape, + const Dims &varStart, const Dims &varCount, const Dims &varMemStart, + const Dims &varMemCount, const std::string &doid, const size_t step, + const int rank, const std::string &address, const std::vector> &ops, VecPtr localBuffer = nullptr, JsonPtr metadataJson = nullptr); // another wrapper for PutData which accepts adios2::core::Variable template - void PutData(const core::Variable &variable, const std::string &doid, - const size_t step, const int rank, const std::string &address, - VecPtr localBuffer = nullptr, JsonPtr metadataJson = nullptr); + void PutData(const core::Variable &variable, const std::string &doid, const size_t step, + const int rank, const std::string &address, VecPtr localBuffer = nullptr, + JsonPtr metadataJson = nullptr); // attach attributes to local pack void AttachAttributesToLocalPack(); @@ -136,9 +133,8 @@ class DataManSerializer void GetAttributes(core::IO &io); template - int GetData(T *output_data, const std::string &varName, - const Dims &varStart, const Dims &varCount, const size_t step, - const Dims &varMemStart = Dims(), + int GetData(T *output_data, const std::string &varName, const Dims &varStart, + const Dims &varCount, const size_t step, const Dims &varMemStart = Dims(), const Dims &varMemCount = Dims()); void Erase(const size_t step, const bool allPreviousSteps = false); @@ -155,10 +151,8 @@ class DataManSerializer size_t LocalBufferSize(); - DmvVecPtr GetEarliestLatestStep(int64_t ¤tStep, - const int requireMinimumBlocks, - const float timeoutSeconds, - const bool latest); + DmvVecPtr GetEarliestLatestStep(int64_t ¤tStep, const int requireMinimumBlocks, + const float timeoutSeconds, const bool latest); OperatorMap GetOperatorMap(); @@ -172,14 +166,11 @@ class DataManSerializer nlohmann::json DeserializeJson(const char *start, size_t size); template - void CalculateMinMax(const T *data, const Dims &count, - nlohmann::json &metaj); + void CalculateMinMax(const T *data, const Dims &count, nlohmann::json &metaj); - bool StepHasMinimumBlocks(const size_t step, - const int requireMinimumBlocks); + bool StepHasMinimumBlocks(const size_t step, const int requireMinimumBlocks); - void Log(const int level, const std::string &message, const bool mpi, - const bool endline); + void Log(const int level, const std::string &message, const bool mpi, const bool endline); // local rank single step data and metadata pack buffer, used in writer, // only accessed from writer app API thread, does not need mutex diff --git a/source/adios2/toolkit/format/dataman/DataManSerializer.tcc b/source/adios2/toolkit/format/dataman/DataManSerializer.tcc index 2e43e28c5a..17b99d2071 100644 --- a/source/adios2/toolkit/format/dataman/DataManSerializer.tcc +++ b/source/adios2/toolkit/format/dataman/DataManSerializer.tcc @@ -23,24 +23,24 @@ namespace format { template <> -inline void DataManSerializer::CalculateMinMax>( - const std::complex *data, const Dims &count, nlohmann::json &metaj) +inline void DataManSerializer::CalculateMinMax>(const std::complex *data, + const Dims &count, + nlohmann::json &metaj) { } template <> -inline void DataManSerializer::CalculateMinMax>( - const std::complex *data, const Dims &count, nlohmann::json &metaj) +inline void +DataManSerializer::CalculateMinMax>(const std::complex *data, + const Dims &count, nlohmann::json &metaj) { } template -void DataManSerializer::CalculateMinMax(const T *data, const Dims &count, - nlohmann::json &metaj) +void DataManSerializer::CalculateMinMax(const T *data, const Dims &count, nlohmann::json &metaj) { PERFSTUBS_SCOPED_TIMER_FUNC(); - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); T max = std::numeric_limits::min(); T min = std::numeric_limits::max(); @@ -67,31 +67,27 @@ void DataManSerializer::CalculateMinMax(const T *data, const Dims &count, } template -void DataManSerializer::PutData(const core::Variable &variable, - const std::string &doid, const size_t step, - const int rank, const std::string &address, +void DataManSerializer::PutData(const core::Variable &variable, const std::string &doid, + const size_t step, const int rank, const std::string &address, VecPtr localBuffer, JsonPtr metadataJson) { PERFSTUBS_SCOPED_TIMER_FUNC(); - PutData(variable.GetData(), variable.m_Name, variable.m_Shape, - variable.m_Start, variable.m_Count, variable.m_MemoryStart, - variable.m_MemoryCount, doid, step, rank, address, - variable.m_Operations, localBuffer, metadataJson); + PutData(variable.GetData(), variable.m_Name, variable.m_Shape, variable.m_Start, + variable.m_Count, variable.m_MemoryStart, variable.m_MemoryCount, doid, step, rank, + address, variable.m_Operations, localBuffer, metadataJson); } template -void DataManSerializer::PutData( - const T *inputData, const std::string &varName, const Dims &varShape, - const Dims &varStart, const Dims &varCount, const Dims &varMemStart, - const Dims &varMemCount, const std::string &doid, const size_t step, - const int rank, const std::string &address, - const std::vector> &ops, VecPtr localBuffer, - JsonPtr metadataJson) +void DataManSerializer::PutData(const T *inputData, const std::string &varName, + const Dims &varShape, const Dims &varStart, const Dims &varCount, + const Dims &varMemStart, const Dims &varMemCount, + const std::string &doid, const size_t step, const int rank, + const std::string &address, + const std::vector> &ops, + VecPtr localBuffer, JsonPtr metadataJson) { PERFSTUBS_SCOPED_TIMER_FUNC(); - Log(1, - "DataManSerializer::PutData begin with Step " + std::to_string(step) + - " Var " + varName, + Log(1, "DataManSerializer::PutData begin with Step " + std::to_string(step) + " Var " + varName, true, true); if (localBuffer == nullptr) @@ -136,18 +132,15 @@ void DataManSerializer::PutData( std::transform(compressionMethod.begin(), compressionMethod.end(), compressionMethod.begin(), ::tolower); - m_CompressBuffer.reserve(std::accumulate(varCount.begin(), - varCount.end(), sizeof(T), + m_CompressBuffer.reserve(std::accumulate(varCount.begin(), varCount.end(), sizeof(T), std::multiplies())); - datasize = ops[0]->Operate(reinterpret_cast(inputData), - varStart, varCount, helper::GetDataType(), - m_CompressBuffer.data()); + datasize = ops[0]->Operate(reinterpret_cast(inputData), varStart, varCount, + helper::GetDataType(), m_CompressBuffer.data()); if (datasize == 0) // operator was not applied datasize = helper::CopyMemoryWithOpHeader( - reinterpret_cast(inputData), varCount, - helper::GetDataType(), m_CompressBuffer.data(), - ops[0]->GetHeaderSize(), MemorySpace::Host); + reinterpret_cast(inputData), varCount, helper::GetDataType(), + m_CompressBuffer.data(), ops[0]->GetHeaderSize(), MemorySpace::Host); compressed = true; } @@ -158,8 +151,8 @@ void DataManSerializer::PutData( } else { - datasize = std::accumulate(varCount.begin(), varCount.end(), sizeof(T), - std::multiplies()); + datasize = + std::accumulate(varCount.begin(), varCount.end(), sizeof(T), std::multiplies()); } metaj["I"] = datasize; @@ -173,36 +166,30 @@ void DataManSerializer::PutData( if (compressed) { - std::memcpy(localBuffer->data() + localBuffer->size() - datasize, - m_CompressBuffer.data(), datasize); + std::memcpy(localBuffer->data() + localBuffer->size() - datasize, m_CompressBuffer.data(), + datasize); } else { - std::memcpy(localBuffer->data() + localBuffer->size() - datasize, - inputData, datasize); + std::memcpy(localBuffer->data() + localBuffer->size() - datasize, inputData, datasize); } if (metadataJson == nullptr) { - m_MetadataJson[std::to_string(step)][std::to_string(rank)].emplace_back( - std::move(metaj)); + m_MetadataJson[std::to_string(step)][std::to_string(rank)].emplace_back(std::move(metaj)); } else { - (*metadataJson)[std::to_string(step)][std::to_string(rank)] - .emplace_back(std::move(metaj)); + (*metadataJson)[std::to_string(step)][std::to_string(rank)].emplace_back(std::move(metaj)); } - Log(1, - "DataManSerializer::PutData end with Step " + std::to_string(step) + - " Var " + varName, + Log(1, "DataManSerializer::PutData end with Step " + std::to_string(step) + " Var " + varName, true, true); } template -int DataManSerializer::GetData(T *outputData, const std::string &varName, - const Dims &varStart, const Dims &varCount, - const size_t step, const Dims &varMemStart, +int DataManSerializer::GetData(T *outputData, const std::string &varName, const Dims &varStart, + const Dims &varCount, const size_t step, const Dims &varMemStart, const Dims &varMemCount) { PERFSTUBS_SCOPED_TIMER_FUNC(); @@ -249,10 +236,9 @@ int DataManSerializer::GetData(T *outputData, const std::string &varName, m_OperatorMap[varName] = j.params; m_OperatorMap[varName]["method"] = j.compression; m_OperatorMapMutex.unlock(); - decompressBuffer.reserve( - helper::GetTotalSize(j.count, sizeof(T))); - core::Decompress(j.buffer->data() + j.position, j.size, - decompressBuffer.data(), MemorySpace::Host); + decompressBuffer.reserve(helper::GetTotalSize(j.count, sizeof(T))); + core::Decompress(j.buffer->data() + j.position, j.size, decompressBuffer.data(), + MemorySpace::Host); decompressed = true; input_data = decompressBuffer.data(); } @@ -263,39 +249,33 @@ int DataManSerializer::GetData(T *outputData, const std::string &varName, } /* single values */ if (j.shape.empty() or - std::all_of(j.shape.begin(), j.shape.end(), - [&](size_t i) { return i == 1; })) + std::all_of(j.shape.begin(), j.shape.end(), [&](size_t i) { return i == 1; })) { - std::memcpy(reinterpret_cast(outputData), input_data, - sizeof(T)); + std::memcpy(reinterpret_cast(outputData), input_data, sizeof(T)); } else if (j.start.size() > 0 and j.start.size() == j.count.size() and - j.start.size() == varStart.size() and - j.start.size() == varCount.size()) + j.start.size() == varStart.size() and j.start.size() == varCount.size()) { if (m_ContiguousMajor) { - helper::NdCopy( - input_data, j.start, j.count, true, j.isLittleEndian, - reinterpret_cast(outputData), varStart, - varCount, true, m_IsLittleEndian, sizeof(T), j.start, - j.count, varMemStart, varMemCount); + helper::NdCopy(input_data, j.start, j.count, true, j.isLittleEndian, + reinterpret_cast(outputData), varStart, varCount, true, + m_IsLittleEndian, sizeof(T), j.start, j.count, varMemStart, + varMemCount); } else { - helper::NdCopy( - input_data, j.start, j.count, j.isRowMajor, - j.isLittleEndian, reinterpret_cast(outputData), - varStart, varCount, m_IsRowMajor, m_IsLittleEndian, - sizeof(T), j.start, j.count, varMemStart, varMemCount); + helper::NdCopy(input_data, j.start, j.count, j.isRowMajor, j.isLittleEndian, + reinterpret_cast(outputData), varStart, varCount, + m_IsRowMajor, m_IsLittleEndian, sizeof(T), j.start, j.count, + varMemStart, varMemCount); } } else { - throw std::runtime_error( - "DataManSerializer::GeData end with Step \" + " - "std::to_string(step) +\n" - " \" Var \" + varName failed"); + throw std::runtime_error("DataManSerializer::GeData end with Step \" + " + "std::to_string(step) +\n" + " \" Var \" + varName failed"); } } } diff --git a/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp b/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp index ff7327b2b1..682ea45cf0 100644 --- a/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp +++ b/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp @@ -50,12 +50,11 @@ const std::string HDF5Common::PARAMETER_CHUNK_FLAG = "H5ChunkDim"; const std::string HDF5Common::PARAMETER_CHUNK_VARS = "H5ChunkVars"; const std::string HDF5Common::PARAMETER_HAS_IDLE_WRITER_RANK = "IdleH5Writer"; -#define CHECK_H5_RETURN(returnCode, reason) \ - { \ - if (returnCode < 0) \ - helper::Throw("Toolkit", \ - "interop::hdf5::HDF5Common", \ - "CHECK_H5_RETURN", reason); \ +#define CHECK_H5_RETURN(returnCode, reason) \ + { \ + if (returnCode < 0) \ + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", \ + "CHECK_H5_RETURN", reason); \ } /* //need to know ndim before defining this. @@ -72,23 +71,18 @@ class HDF5BlockStat HDF5Common::HDF5Common() { - m_DefH5TypeComplexFloat = - H5Tcreate(H5T_COMPOUND, sizeof(std::complex)); + m_DefH5TypeComplexFloat = H5Tcreate(H5T_COMPOUND, sizeof(std::complex)); H5Tinsert(m_DefH5TypeComplexFloat, "r", 0, H5T_NATIVE_FLOAT); - H5Tinsert(m_DefH5TypeComplexFloat, "i", H5Tget_size(H5T_NATIVE_FLOAT), - H5T_NATIVE_FLOAT); + H5Tinsert(m_DefH5TypeComplexFloat, "i", H5Tget_size(H5T_NATIVE_FLOAT), H5T_NATIVE_FLOAT); - m_DefH5TypeComplexDouble = - H5Tcreate(H5T_COMPOUND, sizeof(std::complex)); + m_DefH5TypeComplexDouble = H5Tcreate(H5T_COMPOUND, sizeof(std::complex)); H5Tinsert(m_DefH5TypeComplexDouble, "r", 0, H5T_NATIVE_DOUBLE); - H5Tinsert(m_DefH5TypeComplexDouble, "i", H5Tget_size(H5T_NATIVE_DOUBLE), - H5T_NATIVE_DOUBLE); + H5Tinsert(m_DefH5TypeComplexDouble, "i", H5Tget_size(H5T_NATIVE_DOUBLE), H5T_NATIVE_DOUBLE); - m_DefH5TypeComplexLongDouble = - H5Tcreate(H5T_COMPOUND, sizeof(std::complex)); + m_DefH5TypeComplexLongDouble = H5Tcreate(H5T_COMPOUND, sizeof(std::complex)); H5Tinsert(m_DefH5TypeComplexLongDouble, "r", 0, H5T_NATIVE_LDOUBLE); - H5Tinsert(m_DefH5TypeComplexLongDouble, "i", - H5Tget_size(H5T_NATIVE_LDOUBLE), H5T_NATIVE_LDOUBLE); + H5Tinsert(m_DefH5TypeComplexLongDouble, "i", H5Tget_size(H5T_NATIVE_LDOUBLE), + H5T_NATIVE_LDOUBLE); m_PropertyTxfID = H5Pcreate(H5P_DATASET_XFER); } @@ -180,16 +174,14 @@ void HDF5Common::Append(const std::string &name, helper::Comm const &comm) m_IsGeneratedByAdios = true; } if (!m_IsGeneratedByAdios) - helper::Throw( - "Toolkit", "interop::hdf5::HDF5Common", "Append", - "Likely no such file." + name); + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", "Append", + "Likely no such file." + name); GetNumAdiosSteps(); // read how many steps exists in this file if (0 == m_NumAdiosSteps) - helper::Throw( - "Toolkit", "interop::hdf5::HDF5Common", "Append", - "No valid steps found in " + name); + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", "Append", + "No valid steps found in " + name); if (1 == m_NumAdiosSteps) m_GroupId = H5Gopen(m_FileId, ts0.c_str(), H5P_DEFAULT); else @@ -199,13 +191,11 @@ void HDF5Common::Append(const std::string &name, helper::Comm const &comm) Advance(); } else - helper::Throw( - "Toolkit", "interop::hdf5::HDF5Common", "Append", - "Likely no such file." + name); + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", "Append", + "Likely no such file." + name); } -void HDF5Common::Init(const std::string &name, helper::Comm const &comm, - bool toWrite) +void HDF5Common::Init(const std::string &name, helper::Comm const &comm, bool toWrite) { m_WriteMode = toWrite; m_PropertyListId = H5Pcreate(H5P_FILE_ACCESS); @@ -242,12 +232,10 @@ void HDF5Common::Init(const std::string &name, helper::Comm const &comm, /* * Create a new file collectively and release property list identifier. */ - m_FileId = H5Fcreate(name.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, - m_PropertyListId); + m_FileId = H5Fcreate(name.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, m_PropertyListId); if (m_FileId >= 0) { - m_GroupId = H5Gcreate2(m_FileId, ts0.c_str(), H5P_DEFAULT, - H5P_DEFAULT, H5P_DEFAULT); + m_GroupId = H5Gcreate2(m_FileId, ts0.c_str(), H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (m_GroupId < 0) { @@ -278,10 +266,10 @@ void HDF5Common::WriteAdiosSteps() { if (m_FileId < 0) { - helper::Throw( - "Toolkit", "interop::hdf5::HDF5Common", "WriteAdiosSteps", - "invalid HDF5 file to record " - "steps, in call to Write"); + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", + "WriteAdiosSteps", + "invalid HDF5 file to record " + "steps, in call to Write"); } if (!m_WriteMode) @@ -292,8 +280,8 @@ void HDF5Common::WriteAdiosSteps() hid_t s = H5Screate(H5S_SCALAR); hid_t attr = H5Aexists(m_FileId, ATTRNAME_NUM_STEPS.c_str()); if (0 == attr) - attr = H5Acreate(m_FileId, ATTRNAME_NUM_STEPS.c_str(), H5T_NATIVE_UINT, - s, H5P_DEFAULT, H5P_DEFAULT); + attr = H5Acreate(m_FileId, ATTRNAME_NUM_STEPS.c_str(), H5T_NATIVE_UINT, s, H5P_DEFAULT, + H5P_DEFAULT); else attr = H5Aopen(m_FileId, ATTRNAME_NUM_STEPS.c_str(), H5P_DEFAULT); @@ -321,9 +309,9 @@ unsigned int HDF5Common::GetNumAdiosSteps() if (m_FileId < 0) { - helper::Throw( - "Toolkit", "interop::hdf5::HDF5Common", "GetNumAdiosSteps", - "invalid HDF5 file to read step attribute"); + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", + "GetNumAdiosSteps", + "invalid HDF5 file to read step attribute"); } if (!m_IsGeneratedByAdios) @@ -339,8 +327,7 @@ unsigned int HDF5Common::GetNumAdiosSteps() if (H5Aexists(m_FileId, ATTRNAME_NUM_STEPS.c_str())) { - hid_t attr = - H5Aopen(m_FileId, ATTRNAME_NUM_STEPS.c_str(), H5P_DEFAULT); + hid_t attr = H5Aopen(m_FileId, ATTRNAME_NUM_STEPS.c_str(), H5P_DEFAULT); H5Aread(attr, H5T_NATIVE_UINT, &m_NumAdiosSteps); H5Aclose(attr); @@ -368,8 +355,8 @@ void HDF5Common::ReadAllVariables(core::IO &io) } } -void HDF5Common::FindVarsFromH5(core::IO &io, hid_t top_id, const char *gname, - const char *heritage, unsigned int ts) +void HDF5Common::FindVarsFromH5(core::IO &io, hid_t top_id, const char *gname, const char *heritage, + unsigned int ts) { // int i = 0; // std::string stepStr; @@ -411,8 +398,7 @@ void HDF5Common::FindVarsFromH5(core::IO &io, hid_t top_id, const char *gname, } else { - longName = std::string(heritage) + "/" + gname + - "/" + name; + longName = std::string(heritage) + "/" + gname + "/" + name; } // CreateVar(io, datasetId, name); ReadNativeAttrToIO(io, datasetId, longName); @@ -518,8 +504,8 @@ void HDF5Common::ReadVariables(unsigned int ts, core::IO &io) ///} } -void HDF5Common::AddSingleString(core::IO &io, std::string const &name, - hid_t datasetId, unsigned int ts) +void HDF5Common::AddSingleString(core::IO &io, std::string const &name, hid_t datasetId, + unsigned int ts) { try { @@ -544,8 +530,8 @@ void HDF5Common::AddSingleString(core::IO &io, std::string const &name, } } -void HDF5Common::AddVarString(core::IO &io, std::string const &name, - hid_t datasetId, unsigned int ts) +void HDF5Common::AddVarString(core::IO &io, std::string const &name, hid_t datasetId, + unsigned int ts) { core::Variable *v = io.InquireVariable(name); if (v != NULL) @@ -590,16 +576,14 @@ void HDF5Common::AddVarString(core::IO &io, std::string const &name, for (unsigned long i = 0; i < dims[0]; i++) for (unsigned long j = 0; j < dims[1]; j++) { - std::string curr = name + "__" + std::to_string(i) + "_" + - std::to_string(j); + std::string curr = name + "__" + std::to_string(i) + "_" + std::to_string(j); // AddSingleString(io, curr, datasetId, ts); try { auto &foo = io.DefineVariable(curr); // 0 is a dummy holder. Just to make sure the ts entry // is in there - foo.m_AvailableStepBlockIndexOffsets[ts + 1] = - std::vector({0}); + foo.m_AvailableStepBlockIndexOffsets[ts + 1] = std::vector({0}); foo.m_AvailableStepsStart = ts; // default was set to 0 while m_AvailabelStepsStart // is 1. correcting @@ -629,8 +613,7 @@ void HDF5Common::AddVarString(core::IO &io, std::string const &name, } template -void HDF5Common::AddVar(core::IO &io, std::string const &name, hid_t datasetId, - unsigned int ts) +void HDF5Common::AddVar(core::IO &io, std::string const &name, hid_t datasetId, unsigned int ts) { core::Variable *v = io.InquireVariable(name); if (NULL == v) @@ -665,8 +648,7 @@ void HDF5Common::AddVar(core::IO &io, std::string const &name, hid_t datasetId, { auto &foo = io.DefineVariable(name, shape, zeros, shape); // 0 is a dummy holder. Just to make sure the ts entry is in there - foo.m_AvailableStepBlockIndexOffsets[ts + 1] = - std::vector({0}); + foo.m_AvailableStepBlockIndexOffsets[ts + 1] = std::vector({0}); foo.m_AvailableStepsStart = ts; // default was set to 0 while m_AvailabelStepsStart is 1. // correcting @@ -695,8 +677,8 @@ void HDF5Common::AddVar(core::IO &io, std::string const &name, hid_t datasetId, } } -void HDF5Common::CreateVar(core::IO &io, hid_t datasetId, - std::string const &nameSuggested, unsigned int ts) +void HDF5Common::CreateVar(core::IO &io, hid_t datasetId, std::string const &nameSuggested, + unsigned int ts) { std::string name; ReadADIOSName(datasetId, name); @@ -819,22 +801,21 @@ void HDF5Common::Close() void HDF5Common::SetAdiosStep(int step) { if (m_WriteMode) - helper::Throw( - "Toolkit", "interop::hdf5::HDF5Common", "SetAdiosStep", - "unable to change step at Write MODE"); + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", + "SetAdiosStep", + "unable to change step at Write MODE"); if (step < 0) - helper::Throw( - "Toolkit", "interop::hdf5::HDF5Common", "SetAdiosStep", - "unable to change to negative step"); + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", + "SetAdiosStep", "unable to change to negative step"); GetNumAdiosSteps(); unsigned int ustep = static_cast(step); if (ustep >= m_NumAdiosSteps) - helper::Throw( - "Toolkit", "interop::hdf5::HDF5Common", "SetAdiosStep", - "given time step is more than actual known steps"); + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", + "SetAdiosStep", + "given time step is more than actual known steps"); if (m_CurrentAdiosStep == ustep) { @@ -851,8 +832,7 @@ void HDF5Common::SetAdiosStep(int step) { helper::Throw( "Toolkit", "interop::hdf5::HDF5Common", "SetAdiosStep", - "ERROR: unable to open HDF5 group " + stepName + - ", in call to Open"); + "ERROR: unable to open HDF5 group " + stepName + ", in call to Open"); } m_CurrentAdiosStep = ustep; @@ -885,13 +865,13 @@ void HDF5Common::CleanUpNullVars(core::IO &io) { const std::string &varName = vpair.first; const DataType varType = vpair.second->m_Type; -#define declare_template_instantiation(T) \ - if (varType == helper::GetDataType()) \ - { \ - core::Variable *v = io.InquireVariable(varName); \ - if (!v) \ - return; \ - RemoveEmptyDataset(varName); \ +#define declare_template_instantiation(T) \ + if (varType == helper::GetDataType()) \ + { \ + core::Variable *v = io.InquireVariable(varName); \ + if (!v) \ + return; \ + RemoveEmptyDataset(varName); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -932,9 +912,9 @@ void HDF5Common::Advance() m_GroupId = H5Gopen(m_FileId, stepName.c_str(), H5P_DEFAULT); if (m_GroupId < 0) { - helper::Throw( - "Toolkit", "interop::hdf5::HDF5Common", "Advance", - "unable to open HDF5 group " + stepName + ", in call to Open"); + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", "Advance", + "unable to open HDF5 group " + stepName + + ", in call to Open"); } } ++m_CurrentAdiosStep; @@ -955,14 +935,13 @@ void HDF5Common::CheckWriteGroup() // std::to_string(m_CurrentAdiosStep); std::string stepName; StaticGetAdiosStepString(stepName, m_CurrentAdiosStep); - m_GroupId = H5Gcreate2(m_FileId, stepName.c_str(), H5P_DEFAULT, H5P_DEFAULT, - H5P_DEFAULT); + m_GroupId = H5Gcreate2(m_FileId, stepName.c_str(), H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (m_GroupId < 0) { - helper::Throw( - "Toolkit", "interop::hdf5::HDF5Common", "CheckWriteGroup", - "Unable to create group " + stepName); + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", + "CheckWriteGroup", + "Unable to create group " + stepName); } } @@ -992,8 +971,7 @@ hid_t HDF5Common::GetTypeStringScalar(const std::string &input) return type; } -void HDF5Common::CreateDataset(const std::string &varName, hid_t h5Type, - hid_t filespaceID, +void HDF5Common::CreateDataset(const std::string &varName, hid_t h5Type, hid_t filespaceID, std::vector &datasetChain) { std::vector list; @@ -1020,8 +998,7 @@ void HDF5Common::CreateDataset(const std::string &varName, hid_t h5Type, { if (H5Lexists(topId, list[i].c_str(), H5P_DEFAULT) == 0) { // does not exist, so create - topId = H5Gcreate2(topId, list[i].c_str(), H5P_DEFAULT, - H5P_DEFAULT, H5P_DEFAULT); + topId = H5Gcreate2(topId, list[i].c_str(), H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); } else { @@ -1048,8 +1025,8 @@ void HDF5Common::CreateDataset(const std::string &varName, hid_t h5Type, hid_t dsetID = -1; if (H5Lexists(topId, list.back().c_str(), H5P_DEFAULT) == 0) { - dsetID = H5Dcreate(topId, list.back().c_str(), h5Type, filespaceID, - H5P_DEFAULT, varCreateProperty, H5P_DEFAULT); + dsetID = H5Dcreate(topId, list.back().c_str(), h5Type, filespaceID, H5P_DEFAULT, + varCreateProperty, H5P_DEFAULT); if (list.back().compare(varName) != 0) { StoreADIOSName(varName, dsetID); // only stores when not the same @@ -1067,8 +1044,8 @@ void HDF5Common::StoreADIOSName(const std::string adiosName, hid_t dsetID) hid_t atype = H5Tcopy(H5T_C_S1); H5Tset_size(atype, adiosName.size()); H5Tset_strpad(atype, H5T_STR_NULLTERM); - hid_t attr = H5Acreate2(dsetID, ATTRNAME_GIVEN_ADIOSNAME.c_str(), atype, - attrSpace, H5P_DEFAULT, H5P_DEFAULT); + hid_t attr = H5Acreate2(dsetID, ATTRNAME_GIVEN_ADIOSNAME.c_str(), atype, attrSpace, H5P_DEFAULT, + H5P_DEFAULT); H5Awrite(attr, atype, adiosName.c_str()); H5Sclose(attrSpace); @@ -1084,8 +1061,7 @@ void HDF5Common::ReadADIOSName(hid_t dsetID, std::string &adiosName) return; } - hid_t attrID = - H5Aopen(dsetID, ATTRNAME_GIVEN_ADIOSNAME.c_str(), H5P_DEFAULT); + hid_t attrID = H5Aopen(dsetID, ATTRNAME_GIVEN_ADIOSNAME.c_str(), H5P_DEFAULT); if (attrID < 0) { return; @@ -1105,8 +1081,7 @@ void HDF5Common::ReadADIOSName(hid_t dsetID, std::string &adiosName) free(val); } -bool HDF5Common::OpenDataset(const std::string &varName, - std::vector &datasetChain) +bool HDF5Common::OpenDataset(const std::string &varName, std::vector &datasetChain) { std::vector list; char delimiter = '/'; @@ -1148,8 +1123,8 @@ bool HDF5Common::OpenDataset(const std::string &varName, { // does not exist, err // topId = H5Gcreate2(topId, list[i].c_str(), H5P_DEFAULT, // H5P_DEFAULT,H5P_DEFAULT); - printf("Unable to open HDF5 group: %s for %s. Quit. \n", - list[i].c_str(), varName.c_str()); + printf("Unable to open HDF5 group: %s for %s. Quit. \n", list[i].c_str(), + varName.c_str()); return false; } else @@ -1253,8 +1228,8 @@ inline std::string &trim(std::string &s, const char *t = " \t\n\r\f\v") return ltrim(rtrim(s, t), t); } -void HDF5Common::ReadInStringAttr(core::IO &io, const std::string &attrName, - hid_t attrId, hid_t h5Type, hid_t sid) +void HDF5Common::ReadInStringAttr(core::IO &io, const std::string &attrName, hid_t attrId, + hid_t h5Type, hid_t sid) { hsize_t typeSize = H5Tget_size(h5Type); H5S_class_t stype = H5Sget_simple_extent_type(sid); @@ -1295,10 +1270,8 @@ void HDF5Common::ReadInStringAttr(core::IO &io, const std::string &attrName, } template -void HDF5Common::AddNonStringAttribute(core::IO &io, - std::string const &attrName, - hid_t attrId, hid_t h5Type, - hsize_t arraySize) +void HDF5Common::AddNonStringAttribute(core::IO &io, std::string const &attrName, hid_t attrId, + hid_t h5Type, hsize_t arraySize) { if (arraySize == 0) { // SCALAR @@ -1314,8 +1287,8 @@ void HDF5Common::AddNonStringAttribute(core::IO &io, } } -void HDF5Common::ReadInNonStringAttr(core::IO &io, const std::string &attrName, - hid_t attrId, hid_t h5Type, hid_t sid) +void HDF5Common::ReadInNonStringAttr(core::IO &io, const std::string &attrName, hid_t attrId, + hid_t h5Type, hid_t sid) { hsize_t ndims = H5Sget_simple_extent_ndims(sid); @@ -1374,13 +1347,11 @@ void HDF5Common::ReadInNonStringAttr(core::IO &io, const std::string &attrName, } else if (H5Tequal(H5T_NATIVE_LDOUBLE, h5Type)) { - AddNonStringAttribute(io, attrName, attrId, h5Type, - dims[0]); + AddNonStringAttribute(io, attrName, attrId, h5Type, dims[0]); } } -void HDF5Common::WriteStringAttr(core::IO &io, - core::Attribute *adiosAttr, +void HDF5Common::WriteStringAttr(core::IO &io, core::Attribute *adiosAttr, const std::string &attrName, hid_t parentID) { // core::Attribute *adiosAttr = @@ -1395,8 +1366,7 @@ void HDF5Common::WriteStringAttr(core::IO &io, { hid_t h5Type = GetTypeStringScalar(adiosAttr->m_DataSingleValue.data()); hid_t s = H5Screate(H5S_SCALAR); - hid_t attr = H5Acreate2(parentID, attrName.c_str(), h5Type, s, - H5P_DEFAULT, H5P_DEFAULT); + hid_t attr = H5Acreate2(parentID, attrName.c_str(), h5Type, s, H5P_DEFAULT, H5P_DEFAULT); H5Awrite(attr, h5Type, (adiosAttr->m_DataSingleValue.data())); H5Sclose(s); H5Tclose(h5Type); @@ -1429,8 +1399,7 @@ void HDF5Common::WriteStringAttr(core::IO &io, hsize_t onedim[1] = {adiosAttr->m_Elements}; hid_t s = H5Screate_simple(1, onedim, NULL); - hid_t attr = H5Acreate2(parentID, attrName.c_str(), h5Type, s, - H5P_DEFAULT, H5P_DEFAULT); + hid_t attr = H5Acreate2(parentID, attrName.c_str(), h5Type, s, H5P_DEFAULT, H5P_DEFAULT); H5Awrite(attr, h5Type, all.c_str()); H5Sclose(s); H5Aclose(attr); @@ -1439,8 +1408,8 @@ void HDF5Common::WriteStringAttr(core::IO &io, } template -void HDF5Common::WriteNonStringAttr(core::IO &io, core::Attribute *adiosAttr, - hid_t parentID, const char *h5AttrName) +void HDF5Common::WriteNonStringAttr(core::IO &io, core::Attribute *adiosAttr, hid_t parentID, + const char *h5AttrName) { if (adiosAttr == NULL) { @@ -1452,8 +1421,7 @@ void HDF5Common::WriteNonStringAttr(core::IO &io, core::Attribute *adiosAttr, hid_t s = H5Screate(H5S_SCALAR); // hid_t attr = H5Acreate2(parentID, adiosAttr->m_Name.c_str(), h5Type, // s, - hid_t attr = H5Acreate2(parentID, h5AttrName, h5Type, s, H5P_DEFAULT, - H5P_DEFAULT); + hid_t attr = H5Acreate2(parentID, h5AttrName, h5Type, s, H5P_DEFAULT, H5P_DEFAULT); H5Awrite(attr, h5Type, &(adiosAttr->m_DataSingleValue)); H5Sclose(s); H5Aclose(attr); @@ -1464,16 +1432,14 @@ void HDF5Common::WriteNonStringAttr(core::IO &io, core::Attribute *adiosAttr, hid_t s = H5Screate_simple(1, onedim, NULL); // hid_t attr = H5Acreate2(parentID, adiosAttr->m_Name.c_str(), h5Type, // s, - hid_t attr = H5Acreate2(parentID, h5AttrName, h5Type, s, H5P_DEFAULT, - H5P_DEFAULT); + hid_t attr = H5Acreate2(parentID, h5AttrName, h5Type, s, H5P_DEFAULT, H5P_DEFAULT); H5Awrite(attr, h5Type, adiosAttr->m_DataArray.data()); H5Sclose(s); H5Aclose(attr); } } -void HDF5Common::LocateAttrParent(const std::string &attrName, - std::vector &list, +void HDF5Common::LocateAttrParent(const std::string &attrName, std::vector &list, std::vector &parentChain) { char delimiter = '/'; @@ -1547,13 +1513,13 @@ void HDF5Common::CreateVarsFromIO(core::IO &io) { const std::string &varName = vpair.first; const DataType varType = vpair.second->m_Type; -#define declare_template_instantiation(T) \ - if (varType == helper::GetDataType()) \ - { \ - core::Variable *v = io.InquireVariable(varName); \ - if (!v) \ - return; \ - DefineDataset(*v); \ +#define declare_template_instantiation(T) \ + if (varType == helper::GetDataType()) \ + { \ + core::Variable *v = io.InquireVariable(varName); \ + if (!v) \ + return; \ + DefineDataset(*v); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -1575,8 +1541,7 @@ void HDF5Common::WriteAttrFromIO(core::IO &io) return; } - const std::map &attributesInfo = - io.GetAvailableAttributes(); + const std::map &attributesInfo = io.GetAvailableAttributes(); for (const auto &apair : attributesInfo) { @@ -1614,18 +1579,17 @@ void HDF5Common::WriteAttrFromIO(core::IO &io) else if (attrType == helper::GetDataType()) { // WriteStringAttr(io, attrName, parentID); - core::Attribute *adiosAttr = - io.InquireAttribute(attrName); + core::Attribute *adiosAttr = io.InquireAttribute(attrName); WriteStringAttr(io, adiosAttr, list.back(), parentID); } // // note no std::complext attr types // -#define declare_template_instantiation(T) \ - else if (attrType == helper::GetDataType()) \ - { \ - core::Attribute *adiosAttr = io.InquireAttribute(attrName); \ - WriteNonStringAttr(io, adiosAttr, parentID, list.back().c_str()); \ +#define declare_template_instantiation(T) \ + else if (attrType == helper::GetDataType()) \ + { \ + core::Attribute *adiosAttr = io.InquireAttribute(attrName); \ + WriteNonStringAttr(io, adiosAttr, parentID, list.back().c_str()); \ } ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -1660,9 +1624,9 @@ void HDF5Common::ReadAttrToIO(core::IO &io) for (k = 0; k < numAttrs; k++) { char attrName[MAX_ATTR_NAME_SIZE]; - ret = (herr_t)H5Aget_name_by_idx( - m_FileId, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, (hsize_t)k, - attrName, (size_t)MAX_ATTR_NAME_SIZE, H5P_DEFAULT); + ret = (herr_t)H5Aget_name_by_idx(m_FileId, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, + (hsize_t)k, attrName, (size_t)MAX_ATTR_NAME_SIZE, + H5P_DEFAULT); if (ret >= 0) { // if (strcmp(attrName, ATTRNAME_NUM_STEPS.c_str()) == 0) { @@ -1697,8 +1661,7 @@ void HDF5Common::ReadAttrToIO(core::IO &io) } } -void HDF5Common::ReadNativeAttrToIO(core::IO &io, hid_t datasetId, - std::string const &pathFromRoot) +void HDF5Common::ReadNativeAttrToIO(core::IO &io, hid_t datasetId, std::string const &pathFromRoot) { hsize_t numAttrs; @@ -1726,9 +1689,9 @@ void HDF5Common::ReadNativeAttrToIO(core::IO &io, hid_t datasetId, for (k = 0; k < numAttrs; k++) { char attrName[MAX_ATTR_NAME_SIZE]; - ret = (herr_t)H5Aget_name_by_idx( - datasetId, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, (hsize_t)k, - attrName, (size_t)MAX_ATTR_NAME_SIZE, H5P_DEFAULT); + ret = (herr_t)H5Aget_name_by_idx(datasetId, ".", H5_INDEX_CRT_ORDER, H5_ITER_DEC, + (hsize_t)k, attrName, (size_t)MAX_ATTR_NAME_SIZE, + H5P_DEFAULT); if (ret >= 0) { hid_t attrId = H5Aopen(datasetId, attrName, H5P_DEFAULT); @@ -1751,13 +1714,11 @@ void HDF5Common::ReadNativeAttrToIO(core::IO &io, hid_t datasetId, std::string attrNameInAdios = pathFromRoot + "/" + attrName; if (isString) { - ReadInStringAttr(io, attrNameInAdios, attrId, attrType, - sid); + ReadInStringAttr(io, attrNameInAdios, attrId, attrType, sid); } else { - ReadInNonStringAttr(io, attrNameInAdios, attrId, attrType, - sid); + ReadInNonStringAttr(io, attrNameInAdios, attrId, attrType, sid); } } } @@ -1769,7 +1730,7 @@ void HDF5Common::StaticGetAdiosStepString(std::string &stepName, int ts) stepName = "/Step" + std::to_string(ts); } -#define declare_template_instantiation(T) \ +#define declare_template_instantiation(T) \ template void HDF5Common::Write(core::Variable &, const T *); ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) diff --git a/source/adios2/toolkit/interop/hdf5/HDF5Common.h b/source/adios2/toolkit/interop/hdf5/HDF5Common.h index f83104aaee..b07a9b31d2 100644 --- a/source/adios2/toolkit/interop/hdf5/HDF5Common.h +++ b/source/adios2/toolkit/interop/hdf5/HDF5Common.h @@ -69,9 +69,9 @@ class HDF5TypeGuard m_Type = type; if (key < 0) { - helper::Throw( - "Toolkit", "interop::hdf5::HDF5Common::HDF5TypeGuard", - "HDF5TypeGuard", "HDF5 failure detected"); + helper::Throw("Toolkit", + "interop::hdf5::HDF5Common::HDF5TypeGuard", + "HDF5TypeGuard", "HDF5 failure detected"); } } @@ -144,15 +144,14 @@ class HDF5Common template void DefineDataset(core::Variable &variable); - void CreateDataset(const std::string &varName, hid_t h5Type, - hid_t filespaceID, std::vector &chain); + void CreateDataset(const std::string &varName, hid_t h5Type, hid_t filespaceID, + std::vector &chain); bool OpenDataset(const std::string &varName, std::vector &chain); void RemoveEmptyDataset(const std::string &varName); void StoreADIOSName(const std::string adiosName, hid_t dsetID); void ReadADIOSName(hid_t dsetID, std::string &adiosName); - void LocateAttrParent(const std::string &attrName, - std::vector &list, + void LocateAttrParent(const std::string &attrName, std::vector &list, std::vector &datasetChain); void Close(); @@ -171,8 +170,7 @@ class HDF5Common void WriteAttrFromIO(core::IO &io); void ReadAttrToIO(core::IO &io); - void ReadNativeAttrToIO(core::IO &io, hid_t datasetId, - std::string const &pathFromRoot); + void ReadNativeAttrToIO(core::IO &io, hid_t datasetId, std::string const &pathFromRoot); void SetAdiosStep(int ts); @@ -181,30 +179,26 @@ class HDF5Common void WriteAdiosSteps(); void ReadVariables(unsigned int ts, core::IO &io); - void FindVarsFromH5(core::IO &io, hid_t gid, const char *name, - const char *heritage, unsigned int ts); + void FindVarsFromH5(core::IO &io, hid_t gid, const char *name, const char *heritage, + unsigned int ts); void ReadAllVariables(core::IO &io); void ReadStringScalarDataset(hid_t dataSetId, std::string &result); hid_t GetTypeStringScalar(const std::string &input); - void CreateVar(core::IO &io, hid_t h5Type, std::string const &name, - unsigned int ts); + void CreateVar(core::IO &io, hid_t h5Type, std::string const &name, unsigned int ts); template - void AddVar(core::IO &io, std::string const &name, hid_t datasetId, - unsigned int ts); + void AddVar(core::IO &io, std::string const &name, hid_t datasetId, unsigned int ts); // adios only allows a scalar string var - void AddSingleString(core::IO &io, std::string const &name, hid_t datasetId, - unsigned int ts); + void AddSingleString(core::IO &io, std::string const &name, hid_t datasetId, unsigned int ts); // decompose array string vars - void AddVarString(core::IO &io, std::string const &name, hid_t datasetId, - unsigned int ts); + void AddVarString(core::IO &io, std::string const &name, hid_t datasetId, unsigned int ts); template - void AddNonStringAttribute(core::IO &io, std::string const &attrName, - hid_t attrId, hid_t h5Type, hsize_t arraySize); + void AddNonStringAttribute(core::IO &io, std::string const &attrName, hid_t attrId, + hid_t h5Type, hsize_t arraySize); static void StaticGetAdiosStepString(std::string &adiosStepName, int ts); @@ -237,21 +231,20 @@ class HDF5Common }; private: - void ReadInStringAttr(core::IO &io, const std::string &attrName, - hid_t attrId, hid_t h5Type, hid_t sid); - void ReadInNonStringAttr(core::IO &io, const std::string &attrName, - hid_t attrId, hid_t h5Type, hid_t sid); + void ReadInStringAttr(core::IO &io, const std::string &attrName, hid_t attrId, hid_t h5Type, + hid_t sid); + void ReadInNonStringAttr(core::IO &io, const std::string &attrName, hid_t attrId, hid_t h5Type, + hid_t sid); void WriteStringAttr(core::IO &io, core::Attribute *adiosAttr, const std::string &attrName, hid_t parentID); template - void WriteNonStringAttr(core::IO &io, core::Attribute *adiosAttr, - hid_t parentID, const char *h5Name); + void WriteNonStringAttr(core::IO &io, core::Attribute *adiosAttr, hid_t parentID, + const char *h5Name); template - void GetHDF5SpaceSpec(const core::Variable &variable, - std::vector &, std::vector &, - std::vector &); + void GetHDF5SpaceSpec(const core::Variable &variable, std::vector &, + std::vector &, std::vector &); bool m_WriteMode = false; unsigned int m_NumAdiosSteps = 0; @@ -263,8 +256,7 @@ class HDF5Common template void AddBlockInfo(const core::Variable &varaible, hid_t parentId); template - void AddStats(const core::Variable &variable, hid_t parentId, - std::vector &stats); + void AddStats(const core::Variable &variable, hid_t parentId, std::vector &stats); hid_t m_ChunkPID; int m_ChunkDim; diff --git a/source/adios2/toolkit/interop/hdf5/HDF5Common.tcc b/source/adios2/toolkit/interop/hdf5/HDF5Common.tcc index 1daab783a0..ed1328e792 100644 --- a/source/adios2/toolkit/interop/hdf5/HDF5Common.tcc +++ b/source/adios2/toolkit/interop/hdf5/HDF5Common.tcc @@ -52,18 +52,15 @@ void HDF5Common::DefineDataset(core::Variable &variable) } template <> -void HDF5Common::DefineDataset( - core::Variable &variable) +void HDF5Common::DefineDataset(core::Variable &variable) { - std::cout << "...Needs actual string size, so defer to later? var name=" - << variable.m_Name << std::endl; + std::cout << "...Needs actual string size, so defer to later? var name=" << variable.m_Name + << std::endl; } template -void HDF5Common::GetHDF5SpaceSpec(const core::Variable &variable, - std::vector &dimsf, - std::vector &count, - std::vector &offset) +void HDF5Common::GetHDF5SpaceSpec(const core::Variable &variable, std::vector &dimsf, + std::vector &count, std::vector &offset) { size_t dimSize = std::max(variable.m_Shape.size(), variable.m_Count.size()); for (size_t i = 0; i < dimSize; ++i) @@ -165,8 +162,7 @@ void HDF5Common::Write(core::Variable &variable, const T *values) } else { - H5Dwrite(dsetID, h5Type, H5S_ALL, H5S_ALL, m_PropertyTxfID, - values); + H5Dwrite(dsetID, h5Type, H5S_ALL, H5S_ALL, m_PropertyTxfID, values); } } #endif @@ -195,8 +191,7 @@ void HDF5Common::Write(core::Variable &variable, const T *values) // Select hyperslab fileSpace = H5Dget_space(dsetID); - H5Sselect_hyperslab(fileSpace, H5S_SELECT_SET, offset.data(), NULL, - count.data(), NULL); + H5Sselect_hyperslab(fileSpace, H5S_SELECT_SET, offset.data(), NULL, count.data(), NULL); herr_t status; @@ -211,28 +206,24 @@ void HDF5Common::Write(core::Variable &variable, const T *values) variable.m_Count, true, false, Dims(), Dims(), variable.m_MemoryStart, variable.m_MemoryCount); - status = - H5Dwrite(dsetID, h5Type, memSpace, fileSpace, m_PropertyTxfID, k); + status = H5Dwrite(dsetID, h5Type, memSpace, fileSpace, m_PropertyTxfID, k); free(k); } else { - status = H5Dwrite(dsetID, h5Type, memSpace, fileSpace, m_PropertyTxfID, - values); + status = H5Dwrite(dsetID, h5Type, memSpace, fileSpace, m_PropertyTxfID, values); } if (status < 0) { - helper::Throw( - "Toolkit", "interop::hdf5::HDF5Common", "Write", - "HDF5 file Write failed"); + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", "Write", + "HDF5 file Write failed"); } #ifdef NO_STAT size_t valuesSize = adios2::helper::GetTotalSize(variable.m_Count); T min, max; - adios2::helper::GetMinMaxThreads(values, valuesSize, min, max, 1, - variable.m_MemSpace); + adios2::helper::GetMinMaxThreads(values, valuesSize, min, max, 1, variable.m_MemSpace); int chainSize = chain.size(); hid_t parentId = m_GroupId; @@ -250,8 +241,7 @@ void HDF5Common::Write(core::Variable &variable, const T *values) } template -void HDF5Common::AddStats(const core::Variable &variable, hid_t parentId, - std::vector &stats) +void HDF5Common::AddStats(const core::Variable &variable, hid_t parentId, std::vector &stats) { hid_t h5Type = GetHDF5Type(); @@ -260,19 +250,16 @@ void HDF5Common::AddStats(const core::Variable &variable, hid_t parentId, hsize_t numStat = stats.size(); // min, max etc hsize_t statDim[2] = {(hsize_t)m_CommSize, numStat}; hid_t statSpace_id = H5Screate_simple(numStat, statDim, NULL); - hid_t statId = - H5Dcreate(parentId, statInfo_name.c_str(), h5Type, statSpace_id, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + hid_t statId = H5Dcreate(parentId, statInfo_name.c_str(), h5Type, statSpace_id, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); hsize_t statLocalDim[1] = {numStat}; hid_t statLocal_id = H5Screate_simple(1, statLocalDim, NULL); hsize_t statOffset[2] = {(hsize_t)m_CommRank, 0}; hsize_t statCount[2] = {1, numStat}; - H5Sselect_hyperslab(statSpace_id, H5S_SELECT_SET, statOffset, NULL, - statCount, NULL); + H5Sselect_hyperslab(statSpace_id, H5S_SELECT_SET, statOffset, NULL, statCount, NULL); - H5Dwrite(statId, h5Type, statLocal_id, statSpace_id, m_PropertyTxfID, - stats.data()); + H5Dwrite(statId, h5Type, statLocal_id, statSpace_id, m_PropertyTxfID, stats.data()); H5Sclose(statLocal_id); H5Sclose(statSpace_id); @@ -289,9 +276,8 @@ void HDF5Common::AddBlockInfo(const core::Variable &variable, hid_t parentId) metaDim[0] = m_CommSize; hid_t metaSpace_id = H5Screate_simple(2, metaDim, NULL); std::string blockInfo_name = PREFIX_BLOCKINFO + variable.m_Name; - hid_t metaId = - H5Dcreate(parentId, blockInfo_name.c_str(), H5T_NATIVE_HSIZE, - metaSpace_id, H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + hid_t metaId = H5Dcreate(parentId, blockInfo_name.c_str(), H5T_NATIVE_HSIZE, metaSpace_id, + H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); std::vector blocks(dimSize * 2); for (int i = 0; i < dimSize; i++) @@ -304,11 +290,9 @@ void HDF5Common::AddBlockInfo(const core::Variable &variable, hid_t parentId) hsize_t metaOffset[2] = {(hsize_t)m_CommRank, 0}; hsize_t metaCount[2] = {1, (hsize_t)(dimSize * 2)}; - H5Sselect_hyperslab(metaSpace_id, H5S_SELECT_SET, metaOffset, NULL, - metaCount, NULL); + H5Sselect_hyperslab(metaSpace_id, H5S_SELECT_SET, metaOffset, NULL, metaCount, NULL); - H5Dwrite(metaId, H5T_NATIVE_HSIZE, metaLocal_id, metaSpace_id, - m_PropertyTxfID, blocks.data()); + H5Dwrite(metaId, H5T_NATIVE_HSIZE, metaLocal_id, metaSpace_id, m_PropertyTxfID, blocks.data()); H5Sclose(metaLocal_id); H5Sclose(metaSpace_id); diff --git a/source/adios2/toolkit/profiling/iochrono/IOChrono.cpp b/source/adios2/toolkit/profiling/iochrono/IOChrono.cpp index ec139cfbe7..40fb740aa2 100644 --- a/source/adios2/toolkit/profiling/iochrono/IOChrono.cpp +++ b/source/adios2/toolkit/profiling/iochrono/IOChrono.cpp @@ -71,8 +71,7 @@ std::string JSONProfiler::GetRankProfilingJSON( const std::vector &transportsTypes, const std::vector &transportsProfilers) noexcept { - auto lf_WriterTimer = [](std::string &rankLog, - const profiling::Timer &timer) { + auto lf_WriterTimer = [](std::string &rankLog, const profiling::Timer &timer) { // rankLog += "\"" + timer.m_Process + "_" + timer.GetShortUnits() + // "\": " + std::to_string(timer.m_ProcessTime) + ", "; timer.AddToJsonStr(rankLog); @@ -119,8 +118,7 @@ std::string JSONProfiler::GetRankProfilingJSON( return rankLog; } -std::vector -JSONProfiler::AggregateProfilingJSON(const std::string &rankLog) const +std::vector JSONProfiler::AggregateProfilingJSON(const std::string &rankLog) const { // Gather sizes const size_t rankLogSize = rankLog.size(); @@ -135,12 +133,10 @@ JSONProfiler::AggregateProfilingJSON(const std::string &rankLog) const if (m_RankMPI == 0) // pre-allocate in destination { - gatheredSize = std::accumulate(rankLogsSizes.begin(), - rankLogsSizes.end(), size_t(0)); + gatheredSize = std::accumulate(rankLogsSizes.begin(), rankLogsSizes.end(), size_t(0)); profilingJSON.resize(gatheredSize + header.size() + footer.size() - 2); - adios2::helper::CopyToBuffer(profilingJSON, position, header.c_str(), - header.size()); + adios2::helper::CopyToBuffer(profilingJSON, position, header.c_str(), header.size()); } m_Comm.GathervArrays(rankLog.c_str(), rankLog.size(), rankLogsSizes.data(), @@ -149,8 +145,7 @@ JSONProfiler::AggregateProfilingJSON(const std::string &rankLog) const if (m_RankMPI == 0) // add footer to close JSON { position += gatheredSize - 2; - helper::CopyToBuffer(profilingJSON, position, footer.c_str(), - footer.size()); + helper::CopyToBuffer(profilingJSON, position, footer.c_str(), footer.size()); } return profilingJSON; diff --git a/source/adios2/toolkit/profiling/iochrono/IOChrono.h b/source/adios2/toolkit/profiling/iochrono/IOChrono.h index 4f5516cd5a..735d4fea1c 100644 --- a/source/adios2/toolkit/profiling/iochrono/IOChrono.h +++ b/source/adios2/toolkit/profiling/iochrono/IOChrono.h @@ -69,10 +69,9 @@ class JSONProfiler void Start(const std::string process) { m_Profiler.Start(process); }; void Stop(const std::string process) { m_Profiler.Stop(process); }; - std::string - GetRankProfilingJSON(const std::vector &transportsTypes, - const std::vector - &transportsProfilers) noexcept; + std::string GetRankProfilingJSON( + const std::vector &transportsTypes, + const std::vector &transportsProfilers) noexcept; std::vector AggregateProfilingJSON(const std::string &rankLog) const; diff --git a/source/adios2/toolkit/profiling/iochrono/Timer.cpp b/source/adios2/toolkit/profiling/iochrono/Timer.cpp index cb13a4f2ff..2d90ea6d75 100644 --- a/source/adios2/toolkit/profiling/iochrono/Timer.cpp +++ b/source/adios2/toolkit/profiling/iochrono/Timer.cpp @@ -17,10 +17,8 @@ namespace adios2 namespace profiling { -Timer::Timer(const std::string process, const TimeUnit timeUnit, - const bool trace) -: m_Process(process), m_TimeUnit(timeUnit), - m_LocalTimeDate(helper::LocalTimeDate()) +Timer::Timer(const std::string process, const TimeUnit timeUnit, const bool trace) +: m_Process(process), m_TimeUnit(timeUnit), m_LocalTimeDate(helper::LocalTimeDate()) { if (trace) m_Trace = true; @@ -69,9 +67,9 @@ int64_t Timer::GetElapsedTime() { if (!m_InitialTimeSet) { - helper::Throw( - "Toolkit", "profiling::iochrono::Timer", "GetElapsedTime", - "Resume() in process " + m_Process + " not called"); + helper::Throw("Toolkit", "profiling::iochrono::Timer", + "GetElapsedTime", + "Resume() in process " + m_Process + " not called"); } int64_t time = -1; @@ -80,33 +78,28 @@ int64_t Timer::GetElapsedTime() { case TimeUnit::Microseconds: - time = std::chrono::duration_cast( - m_ElapsedTime - m_InitialTime) + time = std::chrono::duration_cast(m_ElapsedTime - m_InitialTime) .count(); break; case TimeUnit::Milliseconds: - time = std::chrono::duration_cast( - m_ElapsedTime - m_InitialTime) + time = std::chrono::duration_cast(m_ElapsedTime - m_InitialTime) .count(); break; case TimeUnit::Seconds: - time = std::chrono::duration_cast(m_ElapsedTime - - m_InitialTime) - .count(); + time = + std::chrono::duration_cast(m_ElapsedTime - m_InitialTime).count(); break; case TimeUnit::Minutes: - time = std::chrono::duration_cast(m_ElapsedTime - - m_InitialTime) - .count(); + time = + std::chrono::duration_cast(m_ElapsedTime - m_InitialTime).count(); break; case TimeUnit::Hours: - time = std::chrono::duration_cast(m_ElapsedTime - - m_InitialTime) - .count(); + time = + std::chrono::duration_cast(m_ElapsedTime - m_InitialTime).count(); break; } diff --git a/source/adios2/toolkit/profiling/iochrono/Timer.h b/source/adios2/toolkit/profiling/iochrono/Timer.h index d6efb788c3..154779ce88 100644 --- a/source/adios2/toolkit/profiling/iochrono/Timer.h +++ b/source/adios2/toolkit/profiling/iochrono/Timer.h @@ -26,8 +26,8 @@ namespace adios2 namespace profiling { -static std::chrono::time_point - m_ADIOS2ProgStart = std::chrono::high_resolution_clock::now(); +static std::chrono::time_point m_ADIOS2ProgStart = + std::chrono::high_resolution_clock::now(); class Timer { @@ -51,8 +51,7 @@ class Timer * @param process name of process to be measured * @param timeUnit (mus, ms, s, etc.) from ADIOSTypes.h TimeUnit */ - Timer(const std::string process, const TimeUnit timeUnit, - const bool trace = false); + Timer(const std::string process, const TimeUnit timeUnit, const bool trace = false); ~Timer() = default; @@ -73,13 +72,12 @@ class Timer m_nCalls++; if (m_Trace) { - auto relative = - std::chrono::duration_cast( - m_InitialTime - m_ADIOS2ProgStart) + auto relative = std::chrono::duration_cast(m_InitialTime - + m_ADIOS2ProgStart) + .count(); + auto micros = + std::chrono::duration_cast(m_ElapsedTime - m_InitialTime) .count(); - auto micros = std::chrono::duration_cast( - m_ElapsedTime - m_InitialTime) - .count(); if ((micros > 10000)) { @@ -88,8 +86,7 @@ class Timer std::ostringstream ss; - ss << "\"" << relative / 1000.0 << "+" << micros / 1000.0 - << "\""; + ss << "\"" << relative / 1000.0 << "+" << micros / 1000.0 << "\""; m_Details += ss.str(); } @@ -105,8 +102,7 @@ class Timer { rankLog += ", "; } - rankLog += - "\"" + m_Process + "\":{\"mus\":" + std::to_string(m_ProcessTime); + rankLog += "\"" + m_Process + "\":{\"mus\":" + std::to_string(m_ProcessTime); rankLog += ", \"nCalls\":" + std::to_string(m_nCalls); if (500 > m_nCalls) diff --git a/source/adios2/toolkit/query/BlockIndex.h b/source/adios2/toolkit/query/BlockIndex.h index e1eb96bb55..dc6bb8ee7a 100644 --- a/source/adios2/toolkit/query/BlockIndex.h +++ b/source/adios2/toolkit/query/BlockIndex.h @@ -30,14 +30,12 @@ class BlockIndex void Generate(std::string &fromBPFile, const adios2::Params &inputs) {} - void Evaluate(const QueryVar &query, - std::vector> &resultSubBlocks) + void Evaluate(const QueryVar &query, std::vector> &resultSubBlocks) { RunBP4Stat(query, resultSubBlocks); } - void RunBP4Stat(const QueryVar &query, - std::vector> &hitBlocks) + void RunBP4Stat(const QueryVar &query, std::vector> &hitBlocks) { size_t currStep = m_IdxReader.CurrentStep(); adios2::Dims currShape = m_Var.Shape(); @@ -54,21 +52,17 @@ class BlockIndex if (blockInfo.MinMaxs.size() > 0) { - adios2::helper::CalculateSubblockInfo(blockInfo.Count, - blockInfo.SubBlockInfo); - unsigned int numSubBlocks = - static_cast(blockInfo.MinMaxs.size() / 2); + adios2::helper::CalculateSubblockInfo(blockInfo.Count, blockInfo.SubBlockInfo); + unsigned int numSubBlocks = static_cast(blockInfo.MinMaxs.size() / 2); for (unsigned int i = 0; i < numSubBlocks; i++) { - bool isHit = query.m_RangeTree.CheckInterval( - blockInfo.MinMaxs[2 * i], blockInfo.MinMaxs[2 * i + 1]); + bool isHit = query.m_RangeTree.CheckInterval(blockInfo.MinMaxs[2 * i], + blockInfo.MinMaxs[2 * i + 1]); if (isHit) { adios2::Box currSubBlock = - adios2::helper::GetSubBlock( - blockInfo.Count, blockInfo.SubBlockInfo, i); - if (!query.TouchSelection(currSubBlock.first, - currSubBlock.second)) + adios2::helper::GetSubBlock(blockInfo.Count, blockInfo.SubBlockInfo, i); + if (!query.TouchSelection(currSubBlock.first, currSubBlock.second)) continue; hitBlocks.push_back(currSubBlock); } @@ -76,12 +70,10 @@ class BlockIndex } else { // default - bool isHit = query.m_RangeTree.CheckInterval(blockInfo.Min, - blockInfo.Max); + bool isHit = query.m_RangeTree.CheckInterval(blockInfo.Min, blockInfo.Max); if (isHit) { - adios2::Box box = {blockInfo.Start, - blockInfo.Count}; + adios2::Box box = {blockInfo.Start, blockInfo.Count}; hitBlocks.push_back(box); } } diff --git a/source/adios2/toolkit/query/Index.h b/source/adios2/toolkit/query/Index.h index f752780698..7cacb5ce0b 100644 --- a/source/adios2/toolkit/query/Index.h +++ b/source/adios2/toolkit/query/Index.h @@ -18,8 +18,7 @@ class AbstractQueryIndex { public: void Generate(std::string &fromBPFile, const adios2::Params &inputs) = 0; - void Evaluate(const QueryVar &query, - std::vector> &touchedBlocks) = 0; + void Evaluate(const QueryVar &query, std::vector> &touchedBlocks) = 0; }; /* diff --git a/source/adios2/toolkit/query/JsonWorker.cpp b/source/adios2/toolkit/query/JsonWorker.cpp index 88393f4472..2e84151387 100644 --- a/source/adios2/toolkit/query/JsonWorker.cpp +++ b/source/adios2/toolkit/query/JsonWorker.cpp @@ -58,9 +58,8 @@ void ConstructTree(adios2::query::RangeTree &host, nlohmann::json &opO) void LoadVarQuery(QueryVar *q, nlohmann::json &varO) { if (!adios2::query::JsonUtil::HasEntry(varO, "op")) - helper::Throw( - "Toolkit", "query::JsonWorker", "LoadVarQuery", - "No op entry specified for var:" + q->m_VarName); + helper::Throw("Toolkit", "query::JsonWorker", "LoadVarQuery", + "No op entry specified for var:" + q->m_VarName); if (adios2::query::JsonUtil::HasEntry(varO, "boundingbox")) { @@ -85,26 +84,22 @@ void JsonWorker::ParseJson() { // local functions: - auto lf_assertArray = [&](nlohmann::json &jsonO, - const std::string &name) -> void { + auto lf_assertArray = [&](nlohmann::json &jsonO, const std::string &name) -> void { if (!jsonO.is_array()) - helper::Throw( - "Toolkit", "query::JsonWorker", "ParseJson", - "Expecting Array for node:" + name); + helper::Throw("Toolkit", "query::JsonWorker", "ParseJson", + "Expecting Array for node:" + name); }; // lf assert auto lf_parseVar = [&](nlohmann::json &varO) -> QueryVar * { if (!adios2::query::JsonUtil::HasEntry(varO, "name")) - helper::Throw( - "Toolkit", "query::JsonWorker", "ParseJson", - "No var name specified!!"); + helper::Throw("Toolkit", "query::JsonWorker", "ParseJson", + "No var name specified!!"); auto varName = (varO)["name"]; adios2::core::IO &currIO = m_SourceReader->m_IO; const DataType varType = currIO.InquireVariableType(varName); if (varType == DataType::None) { - helper::Log("Query", "JsonWorker", "ParseJson", - "No such variable: " + varName.dump(), + helper::Log("Query", "JsonWorker", "ParseJson", "No such variable: " + varName.dump(), helper::FATALERROR); return nullptr; } @@ -128,17 +123,15 @@ void JsonWorker::ParseJson() { helper::Throw( "Toolkit", "query::JsonWorker", "ParseJson", - "No io node in json query file. Expecting the io node: " + - m_SourceReader->m_IO.m_Name); + "No io node in json query file. Expecting the io node: " + m_SourceReader->m_IO.m_Name); } auto ioO = jsonObj.find("io"); std::string const ioName = (*ioO)["name"]; if (m_SourceReader->m_IO.m_Name.compare(ioName) != 0) - helper::Throw( - "Toolkit", "query::JsonWorker", "ParseJson", - "invalid query io. Expecting io name = " + - m_SourceReader->m_IO.m_Name); + helper::Throw("Toolkit", "query::JsonWorker", "ParseJson", + "invalid query io. Expecting io name = " + + m_SourceReader->m_IO.m_Name); if (adios2::query::JsonUtil::HasEntry(*ioO, "var")) { auto varO = (*ioO).find("var"); @@ -147,13 +140,11 @@ void JsonWorker::ParseJson() return; } if (!adios2::query::JsonUtil::HasEntry(*ioO, "query")) - helper::Throw( - "Toolkit", "query::JsonWorker", "ParseJson", - "no query entry was defined for composite query"); + helper::Throw("Toolkit", "query::JsonWorker", "ParseJson", + "no query entry was defined for composite query"); auto queryO = (*ioO)["query"]; auto relationO = queryO["op"]; - QueryComposite *result = - new QueryComposite(adios2::query::strToRelation(relationO)); + QueryComposite *result = new QueryComposite(adios2::query::strToRelation(relationO)); auto tagO = (*ioO)["tag"]; lf_assertArray(tagO, "tag"); diff --git a/source/adios2/toolkit/query/Query.cpp b/source/adios2/toolkit/query/Query.cpp index 44d3fee78f..97dc3517e6 100644 --- a/source/adios2/toolkit/query/Query.cpp +++ b/source/adios2/toolkit/query/Query.cpp @@ -89,16 +89,14 @@ bool QueryComposite::AddNode(QueryBase *var) // if (m_Nodes.size() > 0) return false; // don't want to support NOT for composite queries // return false; - helper::Throw( - "Toolkit", "query::QueryComposite", "AddNode", - "Currently NOT is not suppprted for composite query"); + helper::Throw("Toolkit", "query::QueryComposite", "AddNode", + "Currently NOT is not suppprted for composite query"); } m_Nodes.push_back(var); return true; } -void QueryComposite::BlockIndexEvaluate(adios2::core::IO &io, - adios2::core::Engine &reader, +void QueryComposite::BlockIndexEvaluate(adios2::core::IO &io, adios2::core::Engine &reader, std::vector> &touchedBlocks) { auto lf_ApplyAND = [&](std::vector> &touched, @@ -241,10 +239,9 @@ bool QueryVar::IsSelectionValid(adios2::Dims &shape) const if (m_Selection.first.size() != shape.size()) { - helper::Log( - "Query", "QueryVar", "IsSelectionValid", - "Query selection dimension is different from shape dimension", - helper::FATALERROR); + helper::Log("Query", "QueryVar", "IsSelectionValid", + "Query selection dimension is different from shape dimension", + helper::FATALERROR); return false; // different dimension } @@ -259,8 +256,7 @@ bool QueryVar::IsSelectionValid(adios2::Dims &shape) const return true; } -void QueryVar::LoadSelection(const std::string &startStr, - const std::string &countStr) +void QueryVar::LoadSelection(const std::string &startStr, const std::string &countStr) { adios2::Dims start = split(startStr, ','); adios2::Dims count = split(countStr, ','); @@ -273,13 +269,12 @@ void QueryVar::LoadSelection(const std::string &startStr, } // simpleQ.setSelection(box.first, box.second); - adios2::Dims shape = - this->m_Selection.second; // set at the creation for default + adios2::Dims shape = this->m_Selection.second; // set at the creation for default this->SetSelection(start, count); if (!this->IsSelectionValid(shape)) - helper::Throw( - "Toolkit", "query::QueryVar", "LoadSelection", - "invalid selections for selection of var: " + this->GetVarName()); + helper::Throw("Toolkit", "query::QueryVar", "LoadSelection", + "invalid selections for selection of var: " + + this->GetVarName()); } bool QueryVar::TouchSelection(adios2::Dims &start, adios2::Dims &count) const @@ -302,8 +297,7 @@ bool QueryVar::TouchSelection(adios2::Dims &start, adios2::Dims &count) const return true; } -void QueryVar::BlockIndexEvaluate(adios2::core::IO &io, - adios2::core::Engine &reader, +void QueryVar::BlockIndexEvaluate(adios2::core::IO &io, adios2::core::Engine &reader, std::vector> &touchedBlocks) { const DataType varType = io.InquireVariableType(m_VarName); @@ -312,12 +306,12 @@ void QueryVar::BlockIndexEvaluate(adios2::core::IO &io, // BlockIndex idx(io, reader); // var already exists when loading query. skipping validity checking -#define declare_type(T) \ - if (varType == adios2::helper::GetDataType()) \ - { \ - core::Variable *var = io.InquireVariable(m_VarName); \ - BlockIndex idx(*var, io, reader); \ - idx.Evaluate(*this, touchedBlocks); \ +#define declare_type(T) \ + if (varType == adios2::helper::GetDataType()) \ + { \ + core::Variable *var = io.InquireVariable(m_VarName); \ + BlockIndex idx(*var, io, reader); \ + idx.Evaluate(*this, touchedBlocks); \ } // ADIOS2_FOREACH_ATTRIBUTE_TYPE_1ARG(declare_type) //skip complex types ADIOS2_FOREACH_ATTRIBUTE_PRIMITIVE_STDTYPE_1ARG(declare_type) diff --git a/source/adios2/toolkit/query/Query.h b/source/adios2/toolkit/query/Query.h index 6ac9057d9e..f3bef1c34b 100644 --- a/source/adios2/toolkit/query/Query.h +++ b/source/adios2/toolkit/query/Query.h @@ -102,8 +102,7 @@ class QueryBase virtual void BlockIndexEvaluate(adios2::core::IO &, adios2::core::Engine &, std::vector> &touchedBlocks) = 0; - Box GetIntersection(const Box &box1, - const Box &box2) noexcept + Box GetIntersection(const Box &box1, const Box &box2) noexcept { Box b1 = adios2::helper::StartEndBox(box1.first, box1.second); Box b2 = adios2::helper::StartEndBox(box2.first, box2.second); @@ -122,8 +121,7 @@ class QueryBase return true; } - virtual void - BroadcastOutputRegion(const adios2::Box ®ion) = 0; + virtual void BroadcastOutputRegion(const adios2::Box ®ion) = 0; void ApplyOutputRegion(std::vector> &touchedBlocks, const adios2::Box &referenceRegion); @@ -143,10 +141,7 @@ class QueryVar : public QueryBase std::string &GetVarName() { return m_VarName; } void BlockIndexEvaluate(adios2::core::IO &, adios2::core::Engine &, std::vector> &touchedBlocks); - void BroadcastOutputRegion(const adios2::Box ®ion) - { - m_OutputRegion = region; - } + void BroadcastOutputRegion(const adios2::Box ®ion) { m_OutputRegion = region; } void Print() { m_RangeTree.Print(); } @@ -175,8 +170,7 @@ class QueryVar : public QueryBase bool TouchSelection(adios2::Dims &start, adios2::Dims &count) const; - void LoadSelection(const std::string &startStr, - const std::string &countStr); + void LoadSelection(const std::string &startStr, const std::string &countStr); void LimitToSelection(std::vector> &touchedBlocks) { diff --git a/source/adios2/toolkit/query/Worker.cpp b/source/adios2/toolkit/query/Worker.cpp index 571c33c11b..9609e8277a 100644 --- a/source/adios2/toolkit/query/Worker.cpp +++ b/source/adios2/toolkit/query/Worker.cpp @@ -8,22 +8,15 @@ namespace query bool EndsWith(const std::string &hostStr, const std::string &fileTag) { if (hostStr.size() >= fileTag.size() && - hostStr.compare(hostStr.size() - fileTag.size(), fileTag.size(), - fileTag) == 0) + hostStr.compare(hostStr.size() - fileTag.size(), fileTag.size(), fileTag) == 0) return true; else return false; } -bool IsFileNameXML(const std::string &filename) -{ - return EndsWith(filename, ".xml"); -} +bool IsFileNameXML(const std::string &filename) { return EndsWith(filename, ".xml"); } -bool IsFileNameJSON(const std::string &filename) -{ - return EndsWith(filename, ".json"); -} +bool IsFileNameJSON(const std::string &filename) { return EndsWith(filename, ".json"); } Worker::Worker(const std::string &queryFile, adios2::core::Engine *adiosEngine) : m_QueryFile(queryFile), m_SourceReader(adiosEngine) @@ -36,16 +29,14 @@ Worker::~Worker() delete m_Query; } -Worker *GetWorker(const std::string &configFile, - adios2::core::Engine *adiosEngine) +Worker *GetWorker(const std::string &configFile, adios2::core::Engine *adiosEngine) { std::ifstream fileStream(configFile); if (!fileStream) { - helper::Throw( - "Toolkit", "query::Worker", "GetWorker", - "file " + configFile + " not found"); + helper::Throw("Toolkit", "query::Worker", "GetWorker", + "file " + configFile + " not found"); } if (adios2::query::IsFileNameXML(configFile)) @@ -59,34 +50,32 @@ Worker *GetWorker(const std::string &configFile, return new JsonWorker(configFile, adiosEngine); } #endif - helper::Throw("Toolkit", "query::Worker", - "GetWorker", + helper::Throw("Toolkit", "query::Worker", "GetWorker", "Unable to construct xml query"); return nullptr; } -QueryVar *Worker::GetBasicVarQuery(adios2::core::IO ¤tIO, - const std::string &variableName) +QueryVar *Worker::GetBasicVarQuery(adios2::core::IO ¤tIO, const std::string &variableName) { const DataType varType = currentIO.InquireVariableType(variableName); if (varType == DataType::None) { - helper::Log("Query", "Worker", "GetBasicVarQuery", - "No such variable: " + variableName, helper::FATALERROR); + helper::Log("Query", "Worker", "GetBasicVarQuery", "No such variable: " + variableName, + helper::FATALERROR); return nullptr; } -#define declare_type(T) \ - if (varType == helper::GetDataType()) \ - { \ - core::Variable *var = currentIO.InquireVariable(variableName); \ - if (var) \ - { \ - QueryVar *q = new QueryVar(variableName); \ - adios2::Dims zero(var->Shape().size(), 0); \ - adios2::Dims shape = var->Shape(); \ - q->SetSelection(zero, shape); \ - return q; \ - } \ +#define declare_type(T) \ + if (varType == helper::GetDataType()) \ + { \ + core::Variable *var = currentIO.InquireVariable(variableName); \ + if (var) \ + { \ + QueryVar *q = new QueryVar(variableName); \ + adios2::Dims zero(var->Shape().size(), 0); \ + adios2::Dims shape = var->Shape(); \ + q->SetSelection(zero, shape); \ + return q; \ + } \ } ADIOS2_FOREACH_ATTRIBUTE_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type @@ -100,15 +89,13 @@ void Worker::GetResultCoverage(const adios2::Box &outputRegion, if (!m_Query->UseOutputRegion(outputRegion)) { - helper::Throw("Toolkit", "query::Worker", - "GetResultCoverage", + helper::Throw("Toolkit", "query::Worker", "GetResultCoverage", "Unable to use the output region"); } if (m_Query && m_SourceReader) { - m_Query->BlockIndexEvaluate(m_SourceReader->m_IO, *m_SourceReader, - touchedBlocks); + m_Query->BlockIndexEvaluate(m_SourceReader->m_IO, *m_SourceReader, touchedBlocks); } } } // namespace query diff --git a/source/adios2/toolkit/query/Worker.h b/source/adios2/toolkit/query/Worker.h index 4b82bf7008..d95042a356 100644 --- a/source/adios2/toolkit/query/Worker.h +++ b/source/adios2/toolkit/query/Worker.h @@ -42,14 +42,12 @@ class Worker adios2::core::Engine *GetSourceReader() { return m_SourceReader; } - void GetResultCoverage(const adios2::Box &, - std::vector> &); + void GetResultCoverage(const adios2::Box &, std::vector> &); protected: Worker(const std::string &configFile, adios2::core::Engine *adiosEngine); - QueryVar *GetBasicVarQuery(adios2::core::IO ¤tIO, - const std::string &variableName); + QueryVar *GetBasicVarQuery(adios2::core::IO ¤tIO, const std::string &variableName); std::string m_QueryFile; // e.g. xml file @@ -91,14 +89,12 @@ class XmlWorker : public Worker void ConstructQuery(QueryVar &q, const pugi::xml_node &node); void ParseIONode(const pugi::xml_node &ioNode); - adios2::query::QueryVar *ParseVarNode(const pugi::xml_node &node, - adios2::core::IO ¤tIO, + adios2::query::QueryVar *ParseVarNode(const pugi::xml_node &node, adios2::core::IO ¤tIO, adios2::core::Engine &reader); }; // XmlWorker -Worker *GetWorker(const std::string &configFile, - adios2::core::Engine *adiosEngine); +Worker *GetWorker(const std::string &configFile, adios2::core::Engine *adiosEngine); } // namespace query } // name space adios2 diff --git a/source/adios2/toolkit/query/XmlWorker.cpp b/source/adios2/toolkit/query/XmlWorker.cpp index c3266a7243..a164de9acf 100644 --- a/source/adios2/toolkit/query/XmlWorker.cpp +++ b/source/adios2/toolkit/query/XmlWorker.cpp @@ -15,9 +15,8 @@ void XmlWorker::ParseMe() std::ifstream fileStream(configXML); if (!fileStream) { - helper::Throw( - "Toolkit", "query::XmlWorker", "ParseMe", - "file " + configXML + " not found"); + helper::Throw("Toolkit", "query::XmlWorker", "ParseMe", + "file " + configXML + " not found"); } std::ostringstream fileSS; fileSS << fileStream.rdbuf(); @@ -25,8 +24,7 @@ void XmlWorker::ParseMe() if (fileSS.str().empty()) { - helper::Throw("Toolkit", "query::XmlWorker", - "ParseMe", + helper::Throw("Toolkit", "query::XmlWorker", "ParseMe", "config xml file is empty"); } @@ -37,8 +35,8 @@ void XmlWorker::ParseMe() const std::unique_ptr document = adios2::helper::XMLDocument(fileContents, "in Query XMLWorker"); - const std::unique_ptr config = adios2::helper::XMLNode( - "adios-query", *document, "in adios-query", true); + const std::unique_ptr config = + adios2::helper::XMLNode("adios-query", *document, "in adios-query", true); const pugi::xml_node ioNode = config->child("io"); ParseIONode(ioNode); @@ -61,12 +59,10 @@ void XmlWorker::ParseIONode(const pugi::xml_node &ioNode) if (engineNode) { const std::unique_ptr type = - adios2::query::XmlUtil::XMLAttribute("type", engineNode, - "in query"); + adios2::query::XmlUtil::XMLAttribute("type", engineNode, "in query"); m_IO->SetEngine(type->value()); - const adios2::Params parameters = - helper::GetParameters(engineNode, "in query"); + const adios2::Params parameters = helper::GetParameters(engineNode, "in query"); m_IO->SetParameters(parameters); } else @@ -75,8 +71,7 @@ void XmlWorker::ParseIONode(const pugi::xml_node &ioNode) } // adios2::Engine reader = currIO.Open(fileName.value(), // adios2::Mode::Read, m_Comm); - m_SourceReader = - &(m_IO->Open(fileName.value(), adios2::Mode::Read, m_Comm)); + m_SourceReader = &(m_IO->Open(fileName.value(), adios2::Mode::Read, m_Comm)); #else const std::unique_ptr ioName = adios2::helper::XMLAttribute("name", ioNode, "in query"); @@ -84,8 +79,8 @@ void XmlWorker::ParseIONode(const pugi::xml_node &ioNode) { helper::Throw( "Toolkit", "query::XmlWorker", "ParseIONode", - "invalid query io. Expecting io name = " + - m_SourceReader->m_IO.m_Name + " found:" + ioName->value()); + "invalid query io. Expecting io name = " + m_SourceReader->m_IO.m_Name + + " found:" + ioName->value()); } #endif @@ -97,8 +92,7 @@ void XmlWorker::ParseIONode(const pugi::xml_node &ioNode) const std::unique_ptr name = adios2::helper::XMLAttribute("name", qTagNode, "in query"); const pugi::xml_node &variable = qTagNode.child("var"); - QueryVar *q = - ParseVarNode(variable, m_SourceReader->m_IO, *m_SourceReader); + QueryVar *q = ParseVarNode(variable, m_SourceReader->m_IO, *m_SourceReader); if (!q) continue; @@ -108,9 +102,9 @@ void XmlWorker::ParseIONode(const pugi::xml_node &ioNode) } else if (!q->IsCompatible(ref)) { - helper::Throw( - "Toolkit", "query::XmlWorker", "ParseIONode", - "impactible query found on var:" + q->GetVarName()); + helper::Throw("Toolkit", "query::XmlWorker", "ParseIONode", + "impactible query found on var:" + + q->GetVarName()); } subqueries[name->value()] = q; } @@ -125,8 +119,7 @@ void XmlWorker::ParseIONode(const pugi::xml_node &ioNode) { const std::unique_ptr op = adios2::helper::XMLAttribute("op", qNode, "in query"); - QueryComposite *q = - new QueryComposite(adios2::query::strToRelation(op->value())); + QueryComposite *q = new QueryComposite(adios2::query::strToRelation(op->value())); for (const pugi::xml_node &sub : qNode.children()) { q->AddNode(subqueries[sub.name()]); @@ -136,37 +129,35 @@ void XmlWorker::ParseIONode(const pugi::xml_node &ioNode) } // parse_io_node // node is the variable node -QueryVar *XmlWorker::ParseVarNode(const pugi::xml_node &node, - adios2::core::IO ¤tIO, +QueryVar *XmlWorker::ParseVarNode(const pugi::xml_node &node, adios2::core::IO ¤tIO, adios2::core::Engine &reader) { - const std::string variableName = std::string( - adios2::helper::XMLAttribute("name", node, "in query")->value()); + const std::string variableName = + std::string(adios2::helper::XMLAttribute("name", node, "in query")->value()); // const std::string varType = currentIO.VariableType(variableName); const DataType varType = currentIO.InquireVariableType(variableName); if (varType == DataType::None) { - helper::Log("Query", "XmlWorker", "ParseVarNode", - "No such variable: " + variableName, helper::FATALERROR); - helper::Throw( - "Toolkit", "query::XmlWorker", "ParseVarNode", - "variable: " + variableName + " not found"); + helper::Log("Query", "XmlWorker", "ParseVarNode", "No such variable: " + variableName, + helper::FATALERROR); + helper::Throw("Toolkit", "query::XmlWorker", "ParseVarNode", + "variable: " + variableName + " not found"); } -#define declare_type(T) \ - if (varType == helper::GetDataType()) \ - { \ - core::Variable *var = currentIO.InquireVariable(variableName); \ - if (var) \ - { \ - QueryVar *q = new QueryVar(variableName); \ - adios2::Dims zero(var->Shape().size(), 0); \ - adios2::Dims shape = var->Shape(); \ - q->SetSelection(zero, shape); \ - ConstructQuery(*q, node); \ - return q; \ - } \ +#define declare_type(T) \ + if (varType == helper::GetDataType()) \ + { \ + core::Variable *var = currentIO.InquireVariable(variableName); \ + if (var) \ + { \ + QueryVar *q = new QueryVar(variableName); \ + adios2::Dims zero(var->Shape().size(), 0); \ + adios2::Dims shape = var->Shape(); \ + q->SetSelection(zero, shape); \ + ConstructQuery(*q, node); \ + return q; \ + } \ } ADIOS2_FOREACH_ATTRIBUTE_PRIMITIVE_STDTYPE_1ARG(declare_type) #undef declare_type @@ -175,17 +166,12 @@ QueryVar *XmlWorker::ParseVarNode(const pugi::xml_node &node, void XmlWorker::ConstructTree(RangeTree &host, const pugi::xml_node &node) { - std::string relationStr = - adios2::helper::XMLAttribute("value", node, "in query")->value(); + std::string relationStr = adios2::helper::XMLAttribute("value", node, "in query")->value(); host.SetRelation(adios2::query::strToRelation(relationStr)); for (const pugi::xml_node &rangeNode : node.children("range")) { - std::string valStr = - adios2::helper::XMLAttribute("value", rangeNode, "in query") - ->value(); - std::string opStr = - adios2::helper::XMLAttribute("compare", rangeNode, "in query") - ->value(); + std::string valStr = adios2::helper::XMLAttribute("value", rangeNode, "in query")->value(); + std::string opStr = adios2::helper::XMLAttribute("compare", rangeNode, "in query")->value(); host.AddLeaf(adios2::query::strToQueryOp(opStr), valStr); } @@ -205,10 +191,8 @@ void XmlWorker::ConstructQuery(QueryVar &simpleQ, const pugi::xml_node &node) if (bbNode) { - std::string startStr = - adios2::helper::XMLAttribute("start", bbNode, "in query")->value(); - std::string countStr = - adios2::helper::XMLAttribute("count", bbNode, "in query")->value(); + std::string startStr = adios2::helper::XMLAttribute("start", bbNode, "in query")->value(); + std::string countStr = adios2::helper::XMLAttribute("count", bbNode, "in query")->value(); adios2::Dims start = split(startStr, ','); adios2::Dims count = split(countStr, ','); @@ -221,15 +205,13 @@ void XmlWorker::ConstructQuery(QueryVar &simpleQ, const pugi::xml_node &node) } // simpleQ.setSelection(box.first, box.second); - adios2::Dims shape = - simpleQ.m_Selection.second; // set at the creation for default + adios2::Dims shape = simpleQ.m_Selection.second; // set at the creation for default simpleQ.SetSelection(start, count); if (!simpleQ.IsSelectionValid(shape)) { - helper::Throw( - "Toolkit", "query::XmlWorker", "ConstructQuery", - "invalid selections for selection of var: " + - simpleQ.GetVarName()); + helper::Throw("Toolkit", "query::XmlWorker", "ConstructQuery", + "invalid selections for selection of var: " + + simpleQ.GetVarName()); } } @@ -237,10 +219,8 @@ void XmlWorker::ConstructQuery(QueryVar &simpleQ, const pugi::xml_node &node) pugi::xml_node tsNode = node.child("tstep"); if (tsNode) { - std::string startStr = - adios2::helper::XMLAttribute("start", tsNode, "in query").value(); - std::string countStr = - adios2::helper::XMLAttribute("count", tsNode, "in query").value(); + std::string startStr = adios2::helper::XMLAttribute("start", tsNode, "in query").value(); + std::string countStr = adios2::helper::XMLAttribute("count", tsNode, "in query").value(); if ((startStr.size() > 0) && (countStr.size() > 0)) { diff --git a/source/adios2/toolkit/shm/TokenChain.h b/source/adios2/toolkit/shm/TokenChain.h index 94d494dacb..140ca9656a 100644 --- a/source/adios2/toolkit/shm/TokenChain.h +++ b/source/adios2/toolkit/shm/TokenChain.h @@ -78,16 +78,14 @@ class TokenChain char *ptr; if (!m_Rank) { - m_Win = - m_NodeComm->Win_allocate_shared(sizeof(segment_), 1, &ptr); + m_Win = m_NodeComm->Win_allocate_shared(sizeof(segment_), 1, &ptr); } else { m_Win = m_NodeComm->Win_allocate_shared(0, 1, &ptr); size_t shmsize; int disp_unit; - m_NodeComm->Win_shared_query(m_Win, 0, &shmsize, &disp_unit, - &ptr); + m_NodeComm->Win_shared_query(m_Win, 0, &shmsize, &disp_unit, &ptr); } m_Shm = reinterpret_cast(ptr); @@ -140,12 +138,11 @@ class TokenChain { if (m_Rank != m_Shm->currentRank) { - helper::Throw( - "Toolkit", "shm::TokenChain", "SendToken", - "function can only be " - "called by the Rank who last called " - "RecvToken, rank = " + - std::to_string(m_Rank)); + helper::Throw("Toolkit", "shm::TokenChain", "SendToken", + "function can only be " + "called by the Rank who last called " + "RecvToken, rank = " + + std::to_string(m_Rank)); } assert(0 <= m_Shm->currentRank && m_Shm->currentRank < m_nProc); m_Shm->token = token; diff --git a/source/adios2/toolkit/sst/cp/cp_common.c b/source/adios2/toolkit/sst/cp/cp_common.c index 743ec09a39..f37124f202 100644 --- a/source/adios2/toolkit/sst/cp/cp_common.c +++ b/source/adios2/toolkit/sst/cp/cp_common.c @@ -17,66 +17,61 @@ char *SSTStreamStatusStr[] = {"NotOpen", "Opening", "Established", "PeerClosed", "PeerFailed", "Closed"}; #ifdef MUTEX_DEBUG -#define STREAM_MUTEX_LOCK(Stream) \ - { \ - fprintf(stderr, "(PID %lx, TID %lx) CP_COMMON Trying lock line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - pthread_mutex_lock(&Stream->DataLock); \ - Stream->Locked++; \ - fprintf(stderr, "(PID %lx, TID %lx) CP_COMMON Got lock\n", \ - (long)getpid(), (long)gettid()); \ - } - -#define STREAM_MUTEX_UNLOCK(Stream) \ - { \ - fprintf(stderr, "(PID %lx, TID %lx) CP_COMMON UNlocking line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - Stream->Locked--; \ - pthread_mutex_unlock(&Stream->DataLock); \ - } -#define STREAM_CONDITION_WAIT(Stream) \ - { \ - fprintf( \ - stderr, \ - "(PID %lx, TID %lx) CP_COMMON Dropping Condition Lock line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - Stream->Locked = 0; \ - pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ - fprintf( \ - stderr, \ - "(PID %lx, TID %lx) CP_COMMON Acquired Condition Lock line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - Stream->Locked = 1; \ - } -#define STREAM_CONDITION_SIGNAL(Stream) \ - { \ - assert(Stream->Locked == 1); \ - fprintf(stderr, \ - "(PID %lx, TID %lx) CP_COMMON Signalling Condition line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - pthread_cond_signal(&Stream->DataCondition); \ - } - -#define STREAM_ASSERT_LOCKED(Stream) \ - { \ - assert(Stream->Locked == 1); \ +#define STREAM_MUTEX_LOCK(Stream) \ + { \ + fprintf(stderr, "(PID %lx, TID %lx) CP_COMMON Trying lock line %d\n", (long)getpid(), \ + (long)gettid(), __LINE__); \ + pthread_mutex_lock(&Stream->DataLock); \ + Stream->Locked++; \ + fprintf(stderr, "(PID %lx, TID %lx) CP_COMMON Got lock\n", (long)getpid(), \ + (long)gettid()); \ + } + +#define STREAM_MUTEX_UNLOCK(Stream) \ + { \ + fprintf(stderr, "(PID %lx, TID %lx) CP_COMMON UNlocking line %d\n", (long)getpid(), \ + (long)gettid(), __LINE__); \ + Stream->Locked--; \ + pthread_mutex_unlock(&Stream->DataLock); \ + } +#define STREAM_CONDITION_WAIT(Stream) \ + { \ + fprintf(stderr, "(PID %lx, TID %lx) CP_COMMON Dropping Condition Lock line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + Stream->Locked = 0; \ + pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ + fprintf(stderr, "(PID %lx, TID %lx) CP_COMMON Acquired Condition Lock line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + Stream->Locked = 1; \ + } +#define STREAM_CONDITION_SIGNAL(Stream) \ + { \ + assert(Stream->Locked == 1); \ + fprintf(stderr, "(PID %lx, TID %lx) CP_COMMON Signalling Condition line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + pthread_cond_signal(&Stream->DataCondition); \ + } + +#define STREAM_ASSERT_LOCKED(Stream) \ + { \ + assert(Stream->Locked == 1); \ } #else -#define STREAM_MUTEX_LOCK(Stream) \ - { \ - pthread_mutex_lock(&Stream->DataLock); \ +#define STREAM_MUTEX_LOCK(Stream) \ + { \ + pthread_mutex_lock(&Stream->DataLock); \ } -#define STREAM_MUTEX_UNLOCK(Stream) \ - { \ - pthread_mutex_unlock(&Stream->DataLock); \ +#define STREAM_MUTEX_UNLOCK(Stream) \ + { \ + pthread_mutex_unlock(&Stream->DataLock); \ } -#define STREAM_CONDITION_WAIT(Stream) \ - { \ - pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ +#define STREAM_CONDITION_WAIT(Stream) \ + { \ + pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ } -#define STREAM_CONDITION_SIGNAL(Stream) \ - { \ - pthread_cond_signal(&Stream->DataCondition); \ +#define STREAM_CONDITION_SIGNAL(Stream) \ + { \ + pthread_cond_signal(&Stream->DataCondition); \ } #define STREAM_ASSERT_LOCKED(Stream) #endif @@ -100,13 +95,11 @@ void CP_validateParams(SstStream Stream, SstParams Params, int Writer) } else { - fprintf(stderr, - "Invalid QueueLimit parameter value (%d) for SST Stream %s\n", + fprintf(stderr, "Invalid QueueLimit parameter value (%d) for SST Stream %s\n", Params->QueueLimit, Stream->Filename); } Stream->QueueFullPolicy = (SstQueueFullPolicy)Params->QueueFullPolicy; - Stream->RegistrationMethod = - (SstRegistrationMethod)Params->RegistrationMethod; + Stream->RegistrationMethod = (SstRegistrationMethod)Params->RegistrationMethod; if (Params->DataTransport != NULL) { int i; @@ -120,8 +113,7 @@ void CP_validateParams(SstStream Stream, SstParams Params, int Writer) free(Params->DataTransport); /* canonicalize SelectedTransport */ - if ((strcmp(SelectedTransport, "wan") == 0) || - (strcmp(SelectedTransport, "evpath") == 0)) + if ((strcmp(SelectedTransport, "wan") == 0) || (strcmp(SelectedTransport, "evpath") == 0)) { Params->DataTransport = strdup("evpath"); } @@ -157,8 +149,7 @@ void CP_validateParams(SstStream Stream, SstParams Params, int Writer) SelectedTransport[i] = 0; /* canonicalize SelectedTransport */ - if ((strcmp(SelectedTransport, "sockets") == 0) || - (strcmp(SelectedTransport, "tcp") == 0)) + if ((strcmp(SelectedTransport, "sockets") == 0) || (strcmp(SelectedTransport, "tcp") == 0)) { Params->ControlTransport = strdup("sockets"); } @@ -172,30 +163,25 @@ void CP_validateParams(SstStream Stream, SstParams Params, int Writer) free(SelectedTransport); } Stream->ConnectionUsleepMultiplier = 50; - if ((strcmp(Params->ControlTransport, "enet") == 0) && - getenv("USLEEP_MULTIPLIER")) + if ((strcmp(Params->ControlTransport, "enet") == 0) && getenv("USLEEP_MULTIPLIER")) { - sscanf("%d", getenv("USLEEP_MULTIPLIER"), - &Stream->ConnectionUsleepMultiplier); + sscanf("%d", getenv("USLEEP_MULTIPLIER"), &Stream->ConnectionUsleepMultiplier); } for (int i = 0; Params->ControlTransport[i] != 0; i++) { Params->ControlTransport[i] = tolower(Params->ControlTransport[i]); } - if ((strcmp(Params->ControlTransport, "enet") == 0) && - getenv("USLEEP_MULTIPLIER")) + if ((strcmp(Params->ControlTransport, "enet") == 0) && getenv("USLEEP_MULTIPLIER")) { int tmp; if (sscanf(getenv("USLEEP_MULTIPLIER"), "%d", &tmp) == 1) { Stream->ConnectionUsleepMultiplier = tmp; } - CP_verbose(Stream, PerStepVerbose, - "USING %d as usleep multiplier before connections\n", + CP_verbose(Stream, PerStepVerbose, "USING %d as usleep multiplier before connections\n", Stream->ConnectionUsleepMultiplier); } - CP_verbose(Stream, PerStepVerbose, - "Sst set to use %s as a Control Transport\n", + CP_verbose(Stream, PerStepVerbose, "Sst set to use %s as a Control Transport\n", Params->ControlTransport); if (Params->ControlModule != NULL) { @@ -218,8 +204,7 @@ void CP_validateParams(SstStream Stream, SstParams Params, int Writer) } else { - fprintf(stderr, - "Invalid ControlModule parameter (%s) for SST Stream %s\n", + fprintf(stderr, "Invalid ControlModule parameter (%s) for SST Stream %s\n", Params->ControlModule, Stream->Filename); } free(SelectedModule); @@ -244,73 +229,59 @@ static char *SstQueueFullStr[] = {"Block", "Discard"}; static char *SstCompressStr[] = {"None", "ZFP"}; static char *SstCommPatternStr[] = {"Min", "Peer"}; static char *SstPreloadModeStr[] = {"Off", "On", "Auto"}; -static char *SstStepDistributionModeStr[] = {"StepsAllToAll", "StepsRoundRobin", - "StepsOnDemand"}; +static char *SstStepDistributionModeStr[] = {"StepsAllToAll", "StepsRoundRobin", "StepsOnDemand"}; -extern void CP_dumpParams(SstStream Stream, struct _SstParams *Params, - int ReaderSide) +extern void CP_dumpParams(SstStream Stream, struct _SstParams *Params, int ReaderSide) { if (Stream->CPVerbosityLevel < SummaryVerbose) return; - fprintf(stderr, "Param - RegistrationMethod=%s\n", - SstRegStr[Params->RegistrationMethod]); + fprintf(stderr, "Param - RegistrationMethod=%s\n", SstRegStr[Params->RegistrationMethod]); if (!ReaderSide) { - fprintf(stderr, "Param - RendezvousReaderCount=%d\n", - Params->RendezvousReaderCount); + fprintf(stderr, "Param - RendezvousReaderCount=%d\n", Params->RendezvousReaderCount); fprintf(stderr, "Param - QueueLimit=%d %s\n", Params->QueueLimit, (Params->QueueLimit == 0) ? "(unlimited)" : ""); - fprintf(stderr, "Param - QueueFullPolicy=%s\n", - SstQueueFullStr[Params->QueueFullPolicy]); + fprintf(stderr, "Param - QueueFullPolicy=%s\n", SstQueueFullStr[Params->QueueFullPolicy]); fprintf(stderr, "Param - StepDistributionMode=%s\n", SstStepDistributionModeStr[Params->StepDistributionMode]); } fprintf(stderr, "Param - DataTransport=%s\n", Params->DataTransport ? Params->DataTransport : ""); - fprintf(stderr, "Param - ControlTransport=%s\n", - Params->ControlTransport); + fprintf(stderr, "Param - ControlTransport=%s\n", Params->ControlTransport); fprintf(stderr, "Param - NetworkInterface=%s\n", Params->NetworkInterface ? Params->NetworkInterface : "(default)"); fprintf(stderr, "Param - ControlInterface=%s\n", - Params->ControlInterface - ? Params->ControlInterface - : "(default to NetworkInterface if applicable)"); + Params->ControlInterface ? Params->ControlInterface + : "(default to NetworkInterface if applicable)"); fprintf(stderr, "Param - DataInterface=%s\n", - Params->DataInterface - ? Params->DataInterface - : "(default to NetworkInterface if applicable)"); + Params->DataInterface ? Params->DataInterface + : "(default to NetworkInterface if applicable)"); if (!ReaderSide) { fprintf(stderr, "Param - CompressionMethod=%s\n", SstCompressStr[Params->CompressionMethod]); - fprintf(stderr, "Param - CPCommPattern=%s\n", - SstCommPatternStr[Params->CPCommPattern]); - fprintf(stderr, "Param - MarshalMethod=%s\n", - SstMarshalStr[Params->MarshalMethod]); + fprintf(stderr, "Param - CPCommPattern=%s\n", SstCommPatternStr[Params->CPCommPattern]); + fprintf(stderr, "Param - MarshalMethod=%s\n", SstMarshalStr[Params->MarshalMethod]); fprintf(stderr, "Param - FirstTimestepPrecious=%s\n", Params->FirstTimestepPrecious ? "True" : "False"); - fprintf(stderr, "Param - IsRowMajor=%d (not user settable) \n", - Params->IsRowMajor); + fprintf(stderr, "Param - IsRowMajor=%d (not user settable) \n", Params->IsRowMajor); } if (ReaderSide) { fprintf(stderr, "Param - AlwaysProvideLatestTimestep=%s\n", Params->AlwaysProvideLatestTimestep ? "True" : "False"); } - fprintf(stderr, "Param - OpenTimeoutSecs=%d (seconds)\n", - Params->OpenTimeoutSecs); + fprintf(stderr, "Param - OpenTimeoutSecs=%d (seconds)\n", Params->OpenTimeoutSecs); fprintf(stderr, "Param - SpeculativePreloadMode=%s\n", SstPreloadModeStr[Params->SpeculativePreloadMode]); - fprintf(stderr, "Param - SpecAutoNodeThreshold=%d\n", - Params->SpecAutoNodeThreshold); + fprintf(stderr, "Param - SpecAutoNodeThreshold=%d\n", Params->SpecAutoNodeThreshold); fprintf(stderr, "Param - ControlModule=%s\n", - Params->ControlModule ? Params->ControlModule - : " (default - Advanced param)"); + Params->ControlModule ? Params->ControlModule : " (default - Advanced param)"); } static FMField CP_SstParamsList_RAW[] = { -#define declare_field(Param, Type, Typedecl, Default) \ +#define declare_field(Param, Type, Typedecl, Default) \ {#Param, #Typedecl, sizeof(Typedecl), FMOffset(struct _SstParams *, Param)}, SST_FOREACH_PARAMETER_TYPE_4ARGS(declare_field) #undef declare_field @@ -318,10 +289,8 @@ static FMField CP_SstParamsList_RAW[] = { static FMField *CP_SstParamsList = NULL; static FMField CP_ReaderInitList[] = { - {"ContactInfo", "string", sizeof(char *), - FMOffset(CP_ReaderInitInfo, ContactInfo)}, - {"reader_ID", "integer", sizeof(void *), - FMOffset(CP_ReaderInitInfo, ReaderID)}, + {"ContactInfo", "string", sizeof(char *), FMOffset(CP_ReaderInitInfo, ContactInfo)}, + {"reader_ID", "integer", sizeof(void *), FMOffset(CP_ReaderInitInfo, ReaderID)}, {NULL, NULL, 0, 0}}; static FMStructDescRec CP_ReaderInitStructs[] = { @@ -329,10 +298,8 @@ static FMStructDescRec CP_ReaderInitStructs[] = { {NULL, NULL, 0, NULL}}; static FMField CP_WriterInitList[] = { - {"ContactInfo", "string", sizeof(char *), - FMOffset(CP_WriterInitInfo, ContactInfo)}, - {"WriterID", "integer", sizeof(void *), - FMOffset(CP_WriterInitInfo, WriterID)}, + {"ContactInfo", "string", sizeof(char *), FMOffset(CP_WriterInitInfo, ContactInfo)}, + {"WriterID", "integer", sizeof(void *), FMOffset(CP_WriterInitInfo, WriterID)}, {NULL, NULL, 0, 0}}; static FMStructDescRec CP_WriterInitStructs[] = { @@ -345,8 +312,7 @@ static FMField CP_DP_PairList[] = { {NULL, NULL, 0, 0}}; static FMStructDescRec CP_DP_PairStructs[] = { - {"CP_DP_pair", CP_DP_PairList, sizeof(struct _CP_DP_PairInfo), NULL}, - {NULL, NULL, 0, NULL}}; + {"CP_DP_pair", CP_DP_PairList, sizeof(struct _CP_DP_PairInfo), NULL}, {NULL, NULL, 0, NULL}}; static FMStructDescRec CP_DP_WriterPairStructs[] = { {"CP_DP_WriterPair", CP_DP_PairList, sizeof(struct _CP_DP_PairInfo), NULL}, @@ -355,20 +321,16 @@ static FMStructDescRec CP_DP_WriterPairStructs[] = { static FMField CP_DP_ArrayReaderList[] = { {"ReaderCohortSize", "integer", sizeof(int), FMOffset(struct _CombinedReaderInfo *, ReaderCohortSize)}, - {"CP_ReaderInfo", "(*CP_STRUCT)[ReaderCohortSize]", - sizeof(struct _CP_ReaderInitInfo), + {"CP_ReaderInfo", "(*CP_STRUCT)[ReaderCohortSize]", sizeof(struct _CP_ReaderInitInfo), FMOffset(struct _CombinedReaderInfo *, CP_ReaderInfo)}, {"DP_ReaderInfo", "(*DP_STRUCT)[ReaderCohortSize]", 0, FMOffset(struct _CombinedReaderInfo *, DP_ReaderInfo)}, - {"RankZeroID", "integer", sizeof(void *), - FMOffset(struct _CombinedReaderInfo *, RankZeroID)}, - {"SpecPreload", "integer", sizeof(int), - FMOffset(struct _CombinedReaderInfo *, SpecPreload)}, + {"RankZeroID", "integer", sizeof(void *), FMOffset(struct _CombinedReaderInfo *, RankZeroID)}, + {"SpecPreload", "integer", sizeof(int), FMOffset(struct _CombinedReaderInfo *, SpecPreload)}, {NULL, NULL, 0, 0}}; static FMStructDescRec CP_DP_ReaderArrayStructs[] = { - {"CombinedReaderInfo", CP_DP_ArrayReaderList, - sizeof(struct _CombinedReaderInfo), NULL}, + {"CombinedReaderInfo", CP_DP_ArrayReaderList, sizeof(struct _CombinedReaderInfo), NULL}, {NULL, NULL, 0, NULL}}; static FMField CP_DP_ArrayWriterList[] = { @@ -378,29 +340,25 @@ static FMField CP_DP_ArrayWriterList[] = { FMOffset(struct _CombinedWriterInfo *, WriterConfigParams)}, {"StartingStepNumber", "integer", sizeof(size_t), FMOffset(struct _CombinedWriterInfo *, StartingStepNumber)}, - {"CP_WriterInfo", "(*CP_STRUCT)[WriterCohortSize]", - sizeof(struct _CP_WriterInitInfo), + {"CP_WriterInfo", "(*CP_STRUCT)[WriterCohortSize]", sizeof(struct _CP_WriterInitInfo), FMOffset(struct _CombinedWriterInfo *, CP_WriterInfo)}, {"DP_WriterInfo", "(*DP_STRUCT)[WriterCohortSize]", 0, FMOffset(struct _CombinedWriterInfo *, DP_WriterInfo)}, {NULL, NULL, 0, 0}}; static FMStructDescRec CP_DP_WriterArrayStructs[] = { - {"CombinedWriterInfo", CP_DP_ArrayWriterList, - sizeof(struct _CombinedWriterInfo), NULL}, + {"CombinedWriterInfo", CP_DP_ArrayWriterList, sizeof(struct _CombinedWriterInfo), NULL}, {"SstParams", NULL, sizeof(struct _SstParams), NULL}, {NULL, NULL, 0, NULL}}; static FMField CP_DPQueryList[] = { - {"writer_ID", "integer", sizeof(void *), - FMOffset(struct _DPQueryMsg *, WriterFile)}, + {"writer_ID", "integer", sizeof(void *), FMOffset(struct _DPQueryMsg *, WriterFile)}, {"writer_response_condition", "integer", sizeof(int), FMOffset(struct _DPQueryMsg *, WriterResponseCondition)}, {NULL, NULL, 0, 0}}; static FMStructDescRec CP_DPQueryStructs[] = { - {"DPQuery", CP_DPQueryList, sizeof(struct _DPQueryMsg), NULL}, - {NULL, NULL, 0, NULL}}; + {"DPQuery", CP_DPQueryList, sizeof(struct _DPQueryMsg), NULL}, {NULL, NULL, 0, NULL}}; static FMField CP_DPQueryResponseList[] = { {"writer_response_condition", "integer", sizeof(int), @@ -410,29 +368,24 @@ static FMField CP_DPQueryResponseList[] = { {NULL, NULL, 0, 0}}; static FMStructDescRec CP_DPQueryResponseStructs[] = { - {"DPQueryResponse", CP_DPQueryResponseList, - sizeof(struct _DPQueryResponseMsg), NULL}, + {"DPQueryResponse", CP_DPQueryResponseList, sizeof(struct _DPQueryResponseMsg), NULL}, {NULL, NULL, 0, NULL}}; static FMField CP_ReaderRegisterList[] = { - {"writer_ID", "integer", sizeof(void *), - FMOffset(struct _ReaderRegisterMsg *, WriterFile)}, + {"writer_ID", "integer", sizeof(void *), FMOffset(struct _ReaderRegisterMsg *, WriterFile)}, {"writer_response_condition", "integer", sizeof(int), FMOffset(struct _ReaderRegisterMsg *, WriterResponseCondition)}, {"ReaderCohortSize", "integer", sizeof(int), FMOffset(struct _ReaderRegisterMsg *, ReaderCohortSize)}, - {"SpecPreload", "integer", sizeof(int), - FMOffset(struct _ReaderRegisterMsg *, SpecPreload)}, - {"CP_ReaderInfo", "(*CP_STRUCT)[ReaderCohortSize]", - sizeof(struct _CP_ReaderInitInfo), + {"SpecPreload", "integer", sizeof(int), FMOffset(struct _ReaderRegisterMsg *, SpecPreload)}, + {"CP_ReaderInfo", "(*CP_STRUCT)[ReaderCohortSize]", sizeof(struct _CP_ReaderInitInfo), FMOffset(struct _ReaderRegisterMsg *, CP_ReaderInfo)}, {"DP_ReaderInfo", "(*DP_STRUCT)[ReaderCohortSize]", 0, FMOffset(struct _ReaderRegisterMsg *, DP_ReaderInfo)}, {NULL, NULL, 0, 0}}; static FMStructDescRec CP_ReaderRegisterStructs[] = { - {"ReaderRegister", CP_ReaderRegisterList, sizeof(struct _ReaderRegisterMsg), - NULL}, + {"ReaderRegister", CP_ReaderRegisterList, sizeof(struct _ReaderRegisterMsg), NULL}, {NULL, NULL, 0, NULL}}; static FMField CP_WriterResponseList[] = { @@ -444,16 +397,14 @@ static FMField CP_WriterResponseList[] = { FMOffset(struct _WriterResponseMsg *, WriterConfigParams)}, {"NextStepNumber", "integer", sizeof(size_t), FMOffset(struct _WriterResponseMsg *, NextStepNumber)}, - {"cp_WriterInfo", "(*CP_STRUCT)[WriterCohortSize]", - sizeof(struct _CP_WriterInitInfo), + {"cp_WriterInfo", "(*CP_STRUCT)[WriterCohortSize]", sizeof(struct _CP_WriterInitInfo), FMOffset(struct _WriterResponseMsg *, CP_WriterInfo)}, {"dp_WriterInfo", "(*DP_STRUCT)[WriterCohortSize]", 0, FMOffset(struct _WriterResponseMsg *, DP_WriterInfo)}, {NULL, NULL, 0, 0}}; static FMStructDescRec CP_WriterResponseStructs[] = { - {"WriterResponse", CP_WriterResponseList, sizeof(struct _WriterResponseMsg), - NULL}, + {"WriterResponse", CP_WriterResponseList, sizeof(struct _WriterResponseMsg), NULL}, {"SstParams", NULL, sizeof(struct _SstParams), NULL}, {NULL, NULL, 0, NULL}}; @@ -464,8 +415,7 @@ static FMField MetaDataPlusDPInfoList[] = { FMOffset(struct _MetadataPlusDPInfo *, AttributeData)}, {"Formats", "*FFSFormatBlock", sizeof(struct FFSFormatBlock), FMOffset(struct _MetadataPlusDPInfo *, Formats)}, - {"DP_TimestepInfo", "*DP_STRUCT", 0, - FMOffset(struct _MetadataPlusDPInfo *, DP_TimestepInfo)}, + {"DP_TimestepInfo", "*DP_STRUCT", 0, FMOffset(struct _MetadataPlusDPInfo *, DP_TimestepInfo)}, {NULL, NULL, 0, 0}}; static FMField FFSFormatBlockList[] = { @@ -473,36 +423,29 @@ static FMField FFSFormatBlockList[] = { FMOffset(struct FFSFormatBlock *, FormatServerRep)}, {"FormatServerRepLen", "integer", sizeof(size_t), FMOffset(struct FFSFormatBlock *, FormatServerRepLen)}, - {"FormatIDRep", "char[FormatIDRepLen]", 1, - FMOffset(struct FFSFormatBlock *, FormatIDRep)}, + {"FormatIDRep", "char[FormatIDRepLen]", 1, FMOffset(struct FFSFormatBlock *, FormatIDRep)}, {"FormatIDRepLen", "integer", sizeof(size_t), FMOffset(struct FFSFormatBlock *, FormatIDRepLen)}, {"Next", "*FFSFormatBlock", sizeof(struct FFSFormatBlock), FMOffset(struct FFSFormatBlock *, Next)}, {NULL, NULL, 0, 0}}; -static FMField SstBlockList[] = {{"BlockSize", "integer", sizeof(size_t), - FMOffset(struct _SstBlock *, BlockSize)}, - {"BlockData", "char[BlockSize]", 1, - FMOffset(struct _SstBlock *, BlockData)}, - {NULL, NULL, 0, 0}}; +static FMField SstBlockList[] = { + {"BlockSize", "integer", sizeof(size_t), FMOffset(struct _SstBlock *, BlockSize)}, + {"BlockData", "char[BlockSize]", 1, FMOffset(struct _SstBlock *, BlockData)}, + {NULL, NULL, 0, 0}}; static FMStructDescRec MetaDataPlusDPInfoStructs[] = { - {"MetaDataPlusDPInfo", MetaDataPlusDPInfoList, - sizeof(struct _MetadataPlusDPInfo), NULL}, + {"MetaDataPlusDPInfo", MetaDataPlusDPInfoList, sizeof(struct _MetadataPlusDPInfo), NULL}, {"FFSFormatBlock", FFSFormatBlockList, sizeof(struct FFSFormatBlock), NULL}, {"SstBlock", SstBlockList, sizeof(struct _SstBlock), NULL}, {NULL, NULL, 0, NULL}}; static FMField TimestepMetadataList[] = { - {"RS_Stream", "integer", sizeof(void *), - FMOffset(struct _TimestepMetadataMsg *, RS_Stream)}, - {"timestep", "integer", sizeof(int), - FMOffset(struct _TimestepMetadataMsg *, Timestep)}, - {"cohort_size", "integer", sizeof(int), - FMOffset(struct _TimestepMetadataMsg *, CohortSize)}, - {"preload_mode", "integer", sizeof(int), - FMOffset(struct _TimestepMetadataMsg *, PreloadMode)}, + {"RS_Stream", "integer", sizeof(void *), FMOffset(struct _TimestepMetadataMsg *, RS_Stream)}, + {"timestep", "integer", sizeof(int), FMOffset(struct _TimestepMetadataMsg *, Timestep)}, + {"cohort_size", "integer", sizeof(int), FMOffset(struct _TimestepMetadataMsg *, CohortSize)}, + {"preload_mode", "integer", sizeof(int), FMOffset(struct _TimestepMetadataMsg *, PreloadMode)}, {"formats", "*FFSFormatBlock", sizeof(struct FFSFormatBlock), FMOffset(struct _TimestepMetadataMsg *, Formats)}, {"metadata", "SstBlock[cohort_size]", sizeof(struct _SstBlock), @@ -514,8 +457,7 @@ static FMField TimestepMetadataList[] = { {NULL, NULL, 0, 0}}; static FMStructDescRec TimestepMetadataStructs[] = { - {"timestepMetadata", TimestepMetadataList, - sizeof(struct _TimestepMetadataMsg), NULL}, + {"timestepMetadata", TimestepMetadataList, sizeof(struct _TimestepMetadataMsg), NULL}, {"FFSFormatBlock", FFSFormatBlockList, sizeof(struct FFSFormatBlock), NULL}, {"SstBlock", SstBlockList, sizeof(struct _SstBlock), NULL}, {NULL, NULL, 0, NULL}}; @@ -527,27 +469,24 @@ static FMField TimestepMetadataDistributionList[] = { FMOffset(struct _TimestepMetadataDistributionMsg *, TSmsg)}, {NULL, NULL, 0, 0}}; -static FMField ReleaseRecList[] = {{"Timestep", "integer", sizeof(long), - FMOffset(struct _ReleaseRec *, Timestep)}, - {"Reader", "integer", sizeof(void *), - FMOffset(struct _ReleaseRec *, Reader)}, - {NULL, NULL, 0, 0}}; +static FMField ReleaseRecList[] = { + {"Timestep", "integer", sizeof(long), FMOffset(struct _ReleaseRec *, Timestep)}, + {"Reader", "integer", sizeof(void *), FMOffset(struct _ReleaseRec *, Reader)}, + {NULL, NULL, 0, 0}}; static FMField ReturnMetadataInfoList[] = { {"DiscardThisTimestep", "integer", sizeof(int), FMOffset(struct _ReturnMetadataInfo *, DiscardThisTimestep)}, {"PendingReaderCount", "integer", sizeof(int), FMOffset(struct _ReturnMetadataInfo *, PendingReaderCount)}, - {"ReleaseCount", "integer", sizeof(int), - FMOffset(struct _ReturnMetadataInfo *, ReleaseCount)}, + {"ReleaseCount", "integer", sizeof(int), FMOffset(struct _ReturnMetadataInfo *, ReleaseCount)}, {"ReleaseList", "ReleaseRec[ReleaseCount]", sizeof(struct _ReleaseRec), FMOffset(struct _ReturnMetadataInfo *, ReleaseList)}, {"LockDefnsCount", "integer", sizeof(int), FMOffset(struct _ReturnMetadataInfo *, LockDefnsCount)}, {"LockDefnsList", "ReleaseRec[LockDefnsCount]", sizeof(struct _ReleaseRec), FMOffset(struct _ReturnMetadataInfo *, LockDefnsList)}, - {"ReaderCount", "integer", sizeof(int), - FMOffset(struct _ReturnMetadataInfo *, ReaderCount)}, + {"ReaderCount", "integer", sizeof(int), FMOffset(struct _ReturnMetadataInfo *, ReaderCount)}, {"ReaderStatus", "integer[ReaderCount]", sizeof(enum StreamStatus), FMOffset(struct _ReturnMetadataInfo *, ReaderStatus)}, {"Msg", "timestepMetadata", sizeof(struct _TimestepMetadataMsg), @@ -557,113 +496,92 @@ static FMField ReturnMetadataInfoList[] = { static FMStructDescRec TimestepMetadataDistributionStructs[] = { {"TimestepDistribution", TimestepMetadataDistributionList, sizeof(struct _TimestepMetadataDistributionMsg), NULL}, - {"timestepMetadata", TimestepMetadataList, - sizeof(struct _TimestepMetadataMsg), NULL}, + {"timestepMetadata", TimestepMetadataList, sizeof(struct _TimestepMetadataMsg), NULL}, {"FFSFormatBlock", FFSFormatBlockList, sizeof(struct FFSFormatBlock), NULL}, {"SstBlock", SstBlockList, sizeof(struct _SstBlock), NULL}, {NULL, NULL, 0, NULL}}; static FMStructDescRec ReturnMetadataInfoStructs[] = { - {"ReturnMetadataInfo", ReturnMetadataInfoList, - sizeof(struct _TimestepMetadataDistributionMsg), NULL}, + {"ReturnMetadataInfo", ReturnMetadataInfoList, sizeof(struct _TimestepMetadataDistributionMsg), + NULL}, {"ReleaseRec", ReleaseRecList, sizeof(struct _ReleaseRec), NULL}, - {"timestepMetadata", TimestepMetadataList, - sizeof(struct _TimestepMetadataMsg), NULL}, + {"timestepMetadata", TimestepMetadataList, sizeof(struct _TimestepMetadataMsg), NULL}, {"FFSFormatBlock", FFSFormatBlockList, sizeof(struct FFSFormatBlock), NULL}, {"SstBlock", SstBlockList, sizeof(struct _SstBlock), NULL}, {NULL, NULL, 0, NULL}}; static FMField ReleaseTimestepList[] = { - {"WSR_Stream", "integer", sizeof(void *), - FMOffset(struct _ReleaseTimestepMsg *, WSR_Stream)}, - {"Timestep", "integer", sizeof(int), - FMOffset(struct _ReleaseTimestepMsg *, Timestep)}, + {"WSR_Stream", "integer", sizeof(void *), FMOffset(struct _ReleaseTimestepMsg *, WSR_Stream)}, + {"Timestep", "integer", sizeof(int), FMOffset(struct _ReleaseTimestepMsg *, Timestep)}, {NULL, NULL, 0, 0}}; static FMStructDescRec ReleaseTimestepStructs[] = { - {"ReleaseTimestep", ReleaseTimestepList, sizeof(struct _ReleaseTimestepMsg), - NULL}, + {"ReleaseTimestep", ReleaseTimestepList, sizeof(struct _ReleaseTimestepMsg), NULL}, {NULL, NULL, 0, NULL}}; static FMField LockReaderDefinitionsList[] = { {"WSR_Stream", "integer", sizeof(void *), FMOffset(struct _LockReaderDefinitionsMsg *, WSR_Stream)}, - {"Timestep", "integer", sizeof(int), - FMOffset(struct _LockReaderDefinitionsMsg *, Timestep)}, + {"Timestep", "integer", sizeof(int), FMOffset(struct _LockReaderDefinitionsMsg *, Timestep)}, {NULL, NULL, 0, 0}}; static FMStructDescRec LockReaderDefinitionsStructs[] = { - {"LockReaderDefinitions", LockReaderDefinitionsList, - sizeof(struct _LockReaderDefinitionsMsg), NULL}, + {"LockReaderDefinitions", LockReaderDefinitionsList, sizeof(struct _LockReaderDefinitionsMsg), + NULL}, {NULL, NULL, 0, NULL}}; static FMField CommPatternLockedList[] = { - {"RS_Stream", "integer", sizeof(void *), - FMOffset(struct _CommPatternLockedMsg *, RS_Stream)}, - {"Timestep", "integer", sizeof(int), - FMOffset(struct _CommPatternLockedMsg *, Timestep)}, + {"RS_Stream", "integer", sizeof(void *), FMOffset(struct _CommPatternLockedMsg *, RS_Stream)}, + {"Timestep", "integer", sizeof(int), FMOffset(struct _CommPatternLockedMsg *, Timestep)}, {NULL, NULL, 0, 0}}; static FMStructDescRec CommPatternLockedStructs[] = { - {"CommPatternLocked", CommPatternLockedList, - sizeof(struct _CommPatternLockedMsg), NULL}, + {"CommPatternLocked", CommPatternLockedList, sizeof(struct _CommPatternLockedMsg), NULL}, {NULL, NULL, 0, NULL}}; static FMField PeerSetupList[] = { - {"RS_Stream", "integer", sizeof(void *), - FMOffset(struct _PeerSetupMsg *, RS_Stream)}, - {"WriterRank", "integer", sizeof(int), - FMOffset(struct _PeerSetupMsg *, WriterRank)}, + {"RS_Stream", "integer", sizeof(void *), FMOffset(struct _PeerSetupMsg *, RS_Stream)}, + {"WriterRank", "integer", sizeof(int), FMOffset(struct _PeerSetupMsg *, WriterRank)}, {"WriterCohortSize", "integer", sizeof(int), FMOffset(struct _PeerSetupMsg *, WriterCohortSize)}, {NULL, NULL, 0, 0}}; static FMStructDescRec PeerSetupStructs[] = { - {"PeerSetup", PeerSetupList, sizeof(struct _PeerSetupMsg), NULL}, - {NULL, NULL, 0, NULL}}; + {"PeerSetup", PeerSetupList, sizeof(struct _PeerSetupMsg), NULL}, {NULL, NULL, 0, NULL}}; static FMField ReaderActivateList[] = { - {"WSR_Stream", "integer", sizeof(void *), - FMOffset(struct _ReaderActivateMsg *, WSR_Stream)}, + {"WSR_Stream", "integer", sizeof(void *), FMOffset(struct _ReaderActivateMsg *, WSR_Stream)}, {NULL, NULL, 0, 0}}; static FMStructDescRec ReaderActivateStructs[] = { - {"ReaderActivate", ReaderActivateList, sizeof(struct _ReaderActivateMsg), - NULL}, + {"ReaderActivate", ReaderActivateList, sizeof(struct _ReaderActivateMsg), NULL}, {NULL, NULL, 0, NULL}}; static FMField ReaderRequestStepList[] = { - {"WSR_Stream", "integer", sizeof(void *), - FMOffset(struct _ReaderRequestStepMsg *, WSR_Stream)}, + {"WSR_Stream", "integer", sizeof(void *), FMOffset(struct _ReaderRequestStepMsg *, WSR_Stream)}, {NULL, NULL, 0, 0}}; static FMStructDescRec ReaderRequestStepStructs[] = { - {"ReaderRequestStep", ReaderRequestStepList, - sizeof(struct _ReaderRequestStepMsg), NULL}, + {"ReaderRequestStep", ReaderRequestStepList, sizeof(struct _ReaderRequestStepMsg), NULL}, {NULL, NULL, 0, NULL}}; static FMField WriterCloseList[] = { - {"RS_Stream", "integer", sizeof(void *), - FMOffset(struct _WriterCloseMsg *, RS_Stream)}, - {"FinalTimestep", "integer", sizeof(int), - FMOffset(struct _WriterCloseMsg *, FinalTimestep)}, + {"RS_Stream", "integer", sizeof(void *), FMOffset(struct _WriterCloseMsg *, RS_Stream)}, + {"FinalTimestep", "integer", sizeof(int), FMOffset(struct _WriterCloseMsg *, FinalTimestep)}, {NULL, NULL, 0, 0}}; static FMStructDescRec WriterCloseStructs[] = { - {"WriterClose", WriterCloseList, sizeof(struct _WriterCloseMsg), NULL}, - {NULL, NULL, 0, NULL}}; + {"WriterClose", WriterCloseList, sizeof(struct _WriterCloseMsg), NULL}, {NULL, NULL, 0, NULL}}; static FMField ReaderCloseList[] = { - {"WSR_Stream", "integer", sizeof(void *), - FMOffset(struct _ReaderCloseMsg *, WSR_Stream)}, + {"WSR_Stream", "integer", sizeof(void *), FMOffset(struct _ReaderCloseMsg *, WSR_Stream)}, {NULL, NULL, 0, 0}}; static FMStructDescRec ReaderCloseStructs[] = { - {"ReaderClose", ReaderCloseList, sizeof(struct _ReaderCloseMsg), NULL}, - {NULL, NULL, 0, NULL}}; + {"ReaderClose", ReaderCloseList, sizeof(struct _ReaderCloseMsg), NULL}, {NULL, NULL, 0, NULL}}; -static void replaceFormatNameInFieldList(FMStructDescList l, const char *orig, - const char *repl, int repl_size) +static void replaceFormatNameInFieldList(FMStructDescList l, const char *orig, const char *repl, + int repl_size) { int i = 0; while (l[i].format_name) @@ -678,8 +596,7 @@ static void replaceFormatNameInFieldList(FMStructDescList l, const char *orig, { /* replace 'orig' with 'repl' */ char *old = (char *)l[i].field_list[j].field_type; - char *new = - malloc(strlen(old) - strlen(orig) + strlen(repl) + 1); + char *new = malloc(strlen(old) - strlen(orig) + strlen(repl) + 1); strncpy(new, old, loc - old); new[loc - old] = 0; strcat(new, repl); @@ -716,8 +633,7 @@ static void replaceFormatNameInFieldList(FMStructDescList l, const char *orig, * lists are replaced by * the actual names/sizes provided. */ -static FMStructDescList combineCpDpFormats(FMStructDescList top, - FMStructDescList cp, +static FMStructDescList combineCpDpFormats(FMStructDescList top, FMStructDescList cp, FMStructDescList dp) { int i = 0, topCount = 0, cpCount = 0, dpCount = 0; @@ -736,23 +652,19 @@ static FMStructDescList combineCpDpFormats(FMStructDescList top, dpCount++; CombinedFormats = - realloc(CombinedFormats, sizeof(CombinedFormats[0]) * - (topCount + cpCount + dpCount + 1)); + realloc(CombinedFormats, sizeof(CombinedFormats[0]) * (topCount + cpCount + dpCount + 1)); for (i = 0; i < cpCount; i++) { CombinedFormats[topCount + i].format_name = strdup(cp[i].format_name); - CombinedFormats[topCount + i].field_list = - copy_field_list(cp[i].field_list); + CombinedFormats[topCount + i].field_list = copy_field_list(cp[i].field_list); CombinedFormats[topCount + i].struct_size = cp[i].struct_size; CombinedFormats[topCount + i].opt_info = NULL; } for (i = 0; i < dpCount; i++) { - CombinedFormats[topCount + cpCount + i].format_name = - strdup(dp[i].format_name); - CombinedFormats[topCount + cpCount + i].field_list = - copy_field_list(dp[i].field_list); + CombinedFormats[topCount + cpCount + i].format_name = strdup(dp[i].format_name); + CombinedFormats[topCount + cpCount + i].field_list = copy_field_list(dp[i].field_list); CombinedFormats[topCount + cpCount + i].struct_size = dp[i].struct_size; CombinedFormats[topCount + cpCount + i].opt_info = NULL; } @@ -761,17 +673,15 @@ static FMStructDescList combineCpDpFormats(FMStructDescList top, CombinedFormats[topCount + cpCount + dpCount].struct_size = 0; CombinedFormats[topCount + cpCount + dpCount].opt_info = NULL; - replaceFormatNameInFieldList(CombinedFormats, "CP_STRUCT", - cp ? cp[0].format_name : NULL, + replaceFormatNameInFieldList(CombinedFormats, "CP_STRUCT", cp ? cp[0].format_name : NULL, cp ? cp[0].struct_size : 0); - replaceFormatNameInFieldList(CombinedFormats, "DP_STRUCT", - dp ? dp[0].format_name : NULL, + replaceFormatNameInFieldList(CombinedFormats, "DP_STRUCT", dp ? dp[0].format_name : NULL, dp ? dp[0].struct_size : 0); return CombinedFormats; } -void **CP_consolidateDataToRankZero(SstStream Stream, void *LocalInfo, - FFSTypeHandle Type, void **RetDataBlock) +void **CP_consolidateDataToRankZero(SstStream Stream, void *LocalInfo, FFSTypeHandle Type, + void **RetDataBlock) { FFSBuffer Buf = create_FFSBuffer(); size_t DataSize; @@ -786,8 +696,7 @@ void **CP_consolidateDataToRankZero(SstStream Stream, void *LocalInfo, { RecvCounts = malloc(Stream->CohortSize * sizeof(*RecvCounts)); } - SMPI_Gather(&DataSize, 1, SMPI_SIZE_T, RecvCounts, 1, SMPI_SIZE_T, 0, - Stream->mpiComm); + SMPI_Gather(&DataSize, 1, SMPI_SIZE_T, RecvCounts, 1, SMPI_SIZE_T, 0, Stream->mpiComm); /* * Figure out the total length of block @@ -820,8 +729,8 @@ void **CP_consolidateDataToRankZero(SstStream Stream, void *LocalInfo, * can gather the data */ - SMPI_Gatherv(Buffer, DataSize, SMPI_CHAR, RecvBuffer, RecvCounts, Displs, - SMPI_CHAR, 0, Stream->mpiComm); + SMPI_Gatherv(Buffer, DataSize, SMPI_CHAR, RecvBuffer, RecvCounts, Displs, SMPI_CHAR, 0, + Stream->mpiComm); free_FFSBuffer(Buf); if (Stream->Rank == 0) @@ -834,8 +743,7 @@ void **CP_consolidateDataToRankZero(SstStream Stream, void *LocalInfo, Pointers = malloc(Stream->CohortSize * sizeof(Pointers[0])); for (i = 0; i < Stream->CohortSize; i++) { - FFSdecode_in_place(context, RecvBuffer + Displs[i], - (void **)&Pointers[i]); + FFSdecode_in_place(context, RecvBuffer + Displs[i], (void **)&Pointers[i]); // printf("Decode for rank %d :\n", i); // FMdump_data(FMFormat_of_original(ffs_type), Pointers[i], // 1024000); @@ -847,8 +755,8 @@ void **CP_consolidateDataToRankZero(SstStream Stream, void *LocalInfo, return (void **)Pointers; } -void *CP_distributeDataFromRankZero(SstStream Stream, void *root_info, - FFSTypeHandle Type, void **RetDataBlock) +void *CP_distributeDataFromRankZero(SstStream Stream, void *root_info, FFSTypeHandle Type, + void **RetDataBlock) { int DataSize; char *Buffer; @@ -858,8 +766,7 @@ void *CP_distributeDataFromRankZero(SstStream Stream, void *root_info, { FFSBuffer Buf = create_FFSBuffer(); size_t encodeSize; - char *tmp = - FFSencode(Buf, FMFormat_of_original(Type), root_info, &encodeSize); + char *tmp = FFSencode(Buf, FMFormat_of_original(Type), root_info, &encodeSize); DataSize = (int)encodeSize; SMPI_Bcast(&DataSize, 1, SMPI_INT, 0, Stream->mpiComm); SMPI_Bcast(tmp, DataSize, SMPI_CHAR, 0, Stream->mpiComm); @@ -884,8 +791,8 @@ void *CP_distributeDataFromRankZero(SstStream Stream, void *root_info, return RetVal; } -void **CP_consolidateDataToAll(SstStream Stream, void *LocalInfo, - FFSTypeHandle Type, void **RetDataBlock) +void **CP_consolidateDataToAll(SstStream Stream, void *LocalInfo, FFSTypeHandle Type, + void **RetDataBlock) { FFSBuffer Buf = create_FFSBuffer(); size_t DataSize; @@ -898,8 +805,7 @@ void **CP_consolidateDataToAll(SstStream Stream, void *LocalInfo, RecvCounts = malloc(Stream->CohortSize * sizeof(*RecvCounts)); - SMPI_Allgather(&DataSize, 1, SMPI_SIZE_T, RecvCounts, 1, SMPI_SIZE_T, - Stream->mpiComm); + SMPI_Allgather(&DataSize, 1, SMPI_SIZE_T, RecvCounts, 1, SMPI_SIZE_T, Stream->mpiComm); /* * Figure out the total length of block @@ -930,8 +836,8 @@ void **CP_consolidateDataToAll(SstStream Stream, void *LocalInfo, * can gather the data */ - SMPI_Allgatherv(Buffer, DataSize, SMPI_CHAR, RecvBuffer, RecvCounts, Displs, - SMPI_CHAR, Stream->mpiComm); + SMPI_Allgatherv(Buffer, DataSize, SMPI_CHAR, RecvBuffer, RecvCounts, Displs, SMPI_CHAR, + Stream->mpiComm); free_FFSBuffer(Buf); FFSContext context = Stream->CPInfo->ffs_c; @@ -939,8 +845,7 @@ void **CP_consolidateDataToAll(SstStream Stream, void *LocalInfo, Pointers = malloc(Stream->CohortSize * sizeof(Pointers[0])); for (i = 0; i < Stream->CohortSize; i++) { - FFSdecode_in_place(context, RecvBuffer + Displs[i], - (void **)&Pointers[i]); + FFSdecode_in_place(context, RecvBuffer + Displs[i], (void **)&Pointers[i]); } free(Displs); free(RecvCounts); @@ -967,8 +872,7 @@ static void AddCustomStruct(CP_StructList *List, FMStructDescList Struct) { List->CustomStructCount++; List->CustomStructList = - realloc(List->CustomStructList, - sizeof(FMStructDescList) * List->CustomStructCount); + realloc(List->CustomStructList, sizeof(FMStructDescList) * List->CustomStructCount); List->CustomStructList[List->CustomStructCount - 1] = Struct; } @@ -988,69 +892,48 @@ static void doPrelimCMFormatRegistration(CP_GlobalCMInfo CPInfo) CPInfo->DPQueryFormat = CMregister_format(CPInfo->cm, CP_DPQueryStructs); CMregister_handler(CPInfo->DPQueryFormat, CP_DPQueryHandler, NULL); - CPInfo->DPQueryResponseFormat = - CMregister_format(CPInfo->cm, CP_DPQueryResponseStructs); - CMregister_handler(CPInfo->DPQueryResponseFormat, CP_DPQueryResponseHandler, - NULL); - CPInfo->ReaderActivateFormat = - CMregister_format(CPInfo->cm, ReaderActivateStructs); - CMregister_handler(CPInfo->ReaderActivateFormat, CP_ReaderActivateHandler, - NULL); - CPInfo->ReaderRequestStepFormat = - CMregister_format(CPInfo->cm, ReaderRequestStepStructs); - CMregister_handler(CPInfo->ReaderRequestStepFormat, - CP_ReaderRequestStepHandler, NULL); - - CPInfo->ReleaseTimestepFormat = - CMregister_format(CPInfo->cm, ReleaseTimestepStructs); - CMregister_handler(CPInfo->ReleaseTimestepFormat, CP_ReleaseTimestepHandler, - NULL); + CPInfo->DPQueryResponseFormat = CMregister_format(CPInfo->cm, CP_DPQueryResponseStructs); + CMregister_handler(CPInfo->DPQueryResponseFormat, CP_DPQueryResponseHandler, NULL); + CPInfo->ReaderActivateFormat = CMregister_format(CPInfo->cm, ReaderActivateStructs); + CMregister_handler(CPInfo->ReaderActivateFormat, CP_ReaderActivateHandler, NULL); + CPInfo->ReaderRequestStepFormat = CMregister_format(CPInfo->cm, ReaderRequestStepStructs); + CMregister_handler(CPInfo->ReaderRequestStepFormat, CP_ReaderRequestStepHandler, NULL); + + CPInfo->ReleaseTimestepFormat = CMregister_format(CPInfo->cm, ReleaseTimestepStructs); + CMregister_handler(CPInfo->ReleaseTimestepFormat, CP_ReleaseTimestepHandler, NULL); CPInfo->LockReaderDefinitionsFormat = CMregister_format(CPInfo->cm, LockReaderDefinitionsStructs); - CMregister_handler(CPInfo->LockReaderDefinitionsFormat, - CP_LockReaderDefinitionsHandler, NULL); - CPInfo->CommPatternLockedFormat = - CMregister_format(CPInfo->cm, CommPatternLockedStructs); - CMregister_handler(CPInfo->CommPatternLockedFormat, - CP_CommPatternLockedHandler, NULL); - CPInfo->WriterCloseFormat = - CMregister_format(CPInfo->cm, WriterCloseStructs); + CMregister_handler(CPInfo->LockReaderDefinitionsFormat, CP_LockReaderDefinitionsHandler, NULL); + CPInfo->CommPatternLockedFormat = CMregister_format(CPInfo->cm, CommPatternLockedStructs); + CMregister_handler(CPInfo->CommPatternLockedFormat, CP_CommPatternLockedHandler, NULL); + CPInfo->WriterCloseFormat = CMregister_format(CPInfo->cm, WriterCloseStructs); CMregister_handler(CPInfo->WriterCloseFormat, CP_WriterCloseHandler, NULL); - CPInfo->ReaderCloseFormat = - CMregister_format(CPInfo->cm, ReaderCloseStructs); + CPInfo->ReaderCloseFormat = CMregister_format(CPInfo->cm, ReaderCloseStructs); CMregister_handler(CPInfo->ReaderCloseFormat, CP_ReaderCloseHandler, NULL); } -static void doFinalCMFormatRegistration(CP_GlobalCMInfo CPInfo, - CP_DP_Interface DPInfo) +static void doFinalCMFormatRegistration(CP_GlobalCMInfo CPInfo, CP_DP_Interface DPInfo) { FMStructDescList FullReaderRegisterStructs, FullWriterResponseStructs, CombinedTimestepMetadataStructs; - FullReaderRegisterStructs = - combineCpDpFormats(CP_ReaderRegisterStructs, CP_ReaderInitStructs, - DPInfo->ReaderContactFormats); - CPInfo->ReaderRegisterFormat = - CMregister_format(CPInfo->cm, FullReaderRegisterStructs); - CMregister_handler(CPInfo->ReaderRegisterFormat, CP_ReaderRegisterHandler, - NULL); + FullReaderRegisterStructs = combineCpDpFormats(CP_ReaderRegisterStructs, CP_ReaderInitStructs, + DPInfo->ReaderContactFormats); + CPInfo->ReaderRegisterFormat = CMregister_format(CPInfo->cm, FullReaderRegisterStructs); + CMregister_handler(CPInfo->ReaderRegisterFormat, CP_ReaderRegisterHandler, NULL); AddCustomStruct(&CPInfo->CustomStructs, FullReaderRegisterStructs); - FullWriterResponseStructs = - combineCpDpFormats(CP_WriterResponseStructs, CP_WriterInitStructs, - DPInfo->WriterContactFormats); - CPInfo->WriterResponseFormat = - CMregister_format(CPInfo->cm, FullWriterResponseStructs); - CMregister_handler(CPInfo->WriterResponseFormat, CP_WriterResponseHandler, - NULL); + FullWriterResponseStructs = combineCpDpFormats(CP_WriterResponseStructs, CP_WriterInitStructs, + DPInfo->WriterContactFormats); + CPInfo->WriterResponseFormat = CMregister_format(CPInfo->cm, FullWriterResponseStructs); + CMregister_handler(CPInfo->WriterResponseFormat, CP_WriterResponseHandler, NULL); AddCustomStruct(&CPInfo->CustomStructs, FullWriterResponseStructs); - CombinedTimestepMetadataStructs = combineCpDpFormats( - TimestepMetadataStructs, NULL, DPInfo->TimestepInfoFormats); + CombinedTimestepMetadataStructs = + combineCpDpFormats(TimestepMetadataStructs, NULL, DPInfo->TimestepInfoFormats); CPInfo->DeliverTimestepMetadataFormat = CMregister_format(CPInfo->cm, CombinedTimestepMetadataStructs); - CMregister_handler(CPInfo->DeliverTimestepMetadataFormat, - CP_TimestepMetadataHandler, NULL); + CMregister_handler(CPInfo->DeliverTimestepMetadataFormat, CP_TimestepMetadataHandler, NULL); AddCustomStruct(&CPInfo->CustomStructs, CombinedTimestepMetadataStructs); } @@ -1061,62 +944,52 @@ static void doFFSFormatRegistration(CP_Info CPInfo, CP_DP_Interface DPInfo) FMStructDescList CombinedMetadataStructs; FMFormat f; - PerRankReaderStructs = combineCpDpFormats( - CP_DP_PairStructs, CP_ReaderInitStructs, DPInfo->ReaderContactFormats); + PerRankReaderStructs = + combineCpDpFormats(CP_DP_PairStructs, CP_ReaderInitStructs, DPInfo->ReaderContactFormats); f = FMregister_data_format(CPInfo->fm_c, PerRankReaderStructs); - CPInfo->PerRankReaderInfoFormat = - FFSTypeHandle_by_index(CPInfo->ffs_c, FMformat_index(f)); + CPInfo->PerRankReaderInfoFormat = FFSTypeHandle_by_index(CPInfo->ffs_c, FMformat_index(f)); FFSset_fixed_target(CPInfo->ffs_c, PerRankReaderStructs); AddCustomStruct(&CPInfo->CustomStructs, PerRankReaderStructs); - CombinedReaderStructs = - combineCpDpFormats(CP_DP_ReaderArrayStructs, CP_ReaderInitStructs, - DPInfo->ReaderContactFormats); + CombinedReaderStructs = combineCpDpFormats(CP_DP_ReaderArrayStructs, CP_ReaderInitStructs, + DPInfo->ReaderContactFormats); f = FMregister_data_format(CPInfo->fm_c, CombinedReaderStructs); - CPInfo->CombinedReaderInfoFormat = - FFSTypeHandle_by_index(CPInfo->ffs_c, FMformat_index(f)); + CPInfo->CombinedReaderInfoFormat = FFSTypeHandle_by_index(CPInfo->ffs_c, FMformat_index(f)); FFSset_fixed_target(CPInfo->ffs_c, CombinedReaderStructs); AddCustomStruct(&CPInfo->CustomStructs, CombinedReaderStructs); - PerRankWriterStructs = - combineCpDpFormats(CP_DP_WriterPairStructs, CP_WriterInitStructs, - DPInfo->WriterContactFormats); + PerRankWriterStructs = combineCpDpFormats(CP_DP_WriterPairStructs, CP_WriterInitStructs, + DPInfo->WriterContactFormats); f = FMregister_data_format(CPInfo->fm_c, PerRankWriterStructs); - CPInfo->PerRankWriterInfoFormat = - FFSTypeHandle_by_index(CPInfo->ffs_c, FMformat_index(f)); + CPInfo->PerRankWriterInfoFormat = FFSTypeHandle_by_index(CPInfo->ffs_c, FMformat_index(f)); FFSset_fixed_target(CPInfo->ffs_c, PerRankWriterStructs); AddCustomStruct(&CPInfo->CustomStructs, PerRankWriterStructs); - CombinedWriterStructs = - combineCpDpFormats(CP_DP_WriterArrayStructs, CP_WriterInitStructs, - DPInfo->WriterContactFormats); + CombinedWriterStructs = combineCpDpFormats(CP_DP_WriterArrayStructs, CP_WriterInitStructs, + DPInfo->WriterContactFormats); f = FMregister_data_format(CPInfo->fm_c, CombinedWriterStructs); - CPInfo->CombinedWriterInfoFormat = - FFSTypeHandle_by_index(CPInfo->ffs_c, FMformat_index(f)); + CPInfo->CombinedWriterInfoFormat = FFSTypeHandle_by_index(CPInfo->ffs_c, FMformat_index(f)); FFSset_fixed_target(CPInfo->ffs_c, CombinedWriterStructs); AddCustomStruct(&CPInfo->CustomStructs, CombinedWriterStructs); - CombinedMetadataStructs = combineCpDpFormats( - MetaDataPlusDPInfoStructs, NULL, DPInfo->TimestepInfoFormats); + CombinedMetadataStructs = + combineCpDpFormats(MetaDataPlusDPInfoStructs, NULL, DPInfo->TimestepInfoFormats); f = FMregister_data_format(CPInfo->fm_c, CombinedMetadataStructs); - CPInfo->PerRankMetadataFormat = - FFSTypeHandle_by_index(CPInfo->ffs_c, FMformat_index(f)); + CPInfo->PerRankMetadataFormat = FFSTypeHandle_by_index(CPInfo->ffs_c, FMformat_index(f)); FFSset_fixed_target(CPInfo->ffs_c, CombinedMetadataStructs); AddCustomStruct(&CPInfo->CustomStructs, CombinedMetadataStructs); - CombinedMetadataStructs = combineCpDpFormats( - TimestepMetadataDistributionStructs, NULL, DPInfo->TimestepInfoFormats); + CombinedMetadataStructs = + combineCpDpFormats(TimestepMetadataDistributionStructs, NULL, DPInfo->TimestepInfoFormats); f = FMregister_data_format(CPInfo->fm_c, CombinedMetadataStructs); - CPInfo->TimestepDistributionFormat = - FFSTypeHandle_by_index(CPInfo->ffs_c, FMformat_index(f)); + CPInfo->TimestepDistributionFormat = FFSTypeHandle_by_index(CPInfo->ffs_c, FMformat_index(f)); FFSset_fixed_target(CPInfo->ffs_c, CombinedMetadataStructs); AddCustomStruct(&CPInfo->CustomStructs, CombinedMetadataStructs); - CombinedMetadataStructs = combineCpDpFormats( - ReturnMetadataInfoStructs, NULL, DPInfo->TimestepInfoFormats); + CombinedMetadataStructs = + combineCpDpFormats(ReturnMetadataInfoStructs, NULL, DPInfo->TimestepInfoFormats); f = FMregister_data_format(CPInfo->fm_c, CombinedMetadataStructs); - CPInfo->ReturnMetadataInfoFormat = - FFSTypeHandle_by_index(CPInfo->ffs_c, FMformat_index(f)); + CPInfo->ReturnMetadataInfoFormat = FFSTypeHandle_by_index(CPInfo->ffs_c, FMformat_index(f)); FFSset_fixed_target(CPInfo->ffs_c, CombinedMetadataStructs); AddCustomStruct(&CPInfo->CustomStructs, CombinedMetadataStructs); } @@ -1127,9 +1000,8 @@ static int SharedCMInfoRefCount = 0; extern void AddToLastCallFreeList(void *Block) { - SharedCMInfo->LastCallFreeList = - realloc(SharedCMInfo->LastCallFreeList, - sizeof(void *) * (SharedCMInfo->LastCallFreeCount + 1)); + SharedCMInfo->LastCallFreeList = realloc( + SharedCMInfo->LastCallFreeList, sizeof(void *) * (SharedCMInfo->LastCallFreeCount + 1)); SharedCMInfo->LastCallFreeList[SharedCMInfo->LastCallFreeCount] = Block; SharedCMInfo->LastCallFreeCount++; } @@ -1138,8 +1010,7 @@ static void ReadableSizeString(size_t SizeInBytes, char *Output, size_t size) { int i = 0; size_t LastSizeInBytes = SizeInBytes; - char *byteUnits[] = {"bytes", "kB", "MB", "GB", "TB", - "PB", "EB", "ZB", "YB"}; + char *byteUnits[] = {"bytes", "kB", "MB", "GB", "TB", "PB", "EB", "ZB", "YB"}; while (SizeInBytes > 1024) { @@ -1150,8 +1021,7 @@ static void ReadableSizeString(size_t SizeInBytes, char *Output, size_t size) if ((SizeInBytes < 100) && (i != 0)) { - snprintf(Output, size, "%.1f %s", ((double)LastSizeInBytes) / 1024, - byteUnits[i]); + snprintf(Output, size, "%.1f %s", ((double)LastSizeInBytes) / 1024, byteUnits[i]); } else { @@ -1183,8 +1053,8 @@ extern void DoStreamSummary(SstStream Stream) } AllStats[0].RunningFanIn /= Stream->CohortSize; - CP_verbose(Stream, SummaryVerbose, "\nStream \"%s\" (%p) summary info:\n", - Stream->Filename, (void *)Stream); + CP_verbose(Stream, SummaryVerbose, "\nStream \"%s\" (%p) summary info:\n", Stream->Filename, + (void *)Stream); CP_verbose(Stream, SummaryVerbose, "\tDuration (secs) = %g\n", Stream->Stats.StreamValidTimeSecs); if (Stream->Role == WriterRole) @@ -1197,24 +1067,18 @@ extern void DoStreamSummary(SstStream Stream) else if (Stream->Role == ReaderRole) { char OutputString[256]; - CP_verbose(Stream, SummaryVerbose, - "\tTimestep Metadata Received = %zu\n", + CP_verbose(Stream, SummaryVerbose, "\tTimestep Metadata Received = %zu\n", Stream->Stats.TimestepMetadataReceived); CP_verbose(Stream, SummaryVerbose, "\tTimesteps Consumed = %zu\n", Stream->Stats.TimestepsConsumed); - ReadableSizeString(AllStats[0].MetadataBytesReceived, OutputString, - sizeof(OutputString)); - CP_verbose(Stream, SummaryVerbose, - "\tMetadataBytesReceived = %zu (%s)\n", + ReadableSizeString(AllStats[0].MetadataBytesReceived, OutputString, sizeof(OutputString)); + CP_verbose(Stream, SummaryVerbose, "\tMetadataBytesReceived = %zu (%s)\n", AllStats[0].MetadataBytesReceived, OutputString); - ReadableSizeString(AllStats[0].DataBytesReceived, OutputString, - sizeof(OutputString)); + ReadableSizeString(AllStats[0].DataBytesReceived, OutputString, sizeof(OutputString)); CP_verbose(Stream, SummaryVerbose, "\tDataBytesReceived = %zu (%s)\n", AllStats[0].DataBytesReceived, OutputString); - ReadableSizeString(AllStats[0].PreloadBytesReceived, OutputString, - sizeof(OutputString)); - CP_verbose(Stream, SummaryVerbose, - "\tPreloadBytesReceived = %zu (%s)\n", + ReadableSizeString(AllStats[0].PreloadBytesReceived, OutputString, sizeof(OutputString)); + CP_verbose(Stream, SummaryVerbose, "\tPreloadBytesReceived = %zu (%s)\n", AllStats[0].PreloadBytesReceived, OutputString); CP_verbose(Stream, SummaryVerbose, "\tPreloadTimestepsReceived = %zu\n", Stream->Stats.PreloadTimestepsReceived); @@ -1232,8 +1096,7 @@ extern void SstStreamDestroy(SstStream Stream) * in a safe way after all streams have been destroyed */ struct _SstStream StackStream; - CP_verbose(Stream, PerStepVerbose, "Destroying stream %p, name %s\n", - Stream, Stream->Filename); + CP_verbose(Stream, PerStepVerbose, "Destroying stream %p, name %s\n", Stream, Stream->Filename); STREAM_MUTEX_LOCK(Stream); StackStream = *Stream; Stream->Status = Destroyed; @@ -1264,8 +1127,7 @@ extern void SstStreamDestroy(SstStream Stream) { for (int i = 0; i < Stream->ReaderCount; i++) { - CP_PeerConnection *connections_to_reader = - Stream->Readers[i]->Connections; + CP_PeerConnection *connections_to_reader = Stream->Readers[i]->Connections; if (connections_to_reader) { @@ -1273,8 +1135,7 @@ extern void SstStreamDestroy(SstStream Stream) { if (connections_to_reader[j].CMconn) { - CMConnection_dereference( - connections_to_reader[j].CMconn); + CMConnection_dereference(connections_to_reader[j].CMconn); connections_to_reader[j].CMconn = NULL; } free_attr_list(connections_to_reader[j].ContactList); @@ -1306,8 +1167,7 @@ extern void SstStreamDestroy(SstStream Stream) free(FFSList); FFSList = Tmp; } - if (Stream->WriterConfigParams && - (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS)) + if (Stream->WriterConfigParams && (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS)) { FFSFreeMarshalData(Stream); if (Stream->M) @@ -1391,9 +1251,8 @@ extern void SstStreamDestroy(SstStream Stream) SharedCMInfoRefCount--; if (SharedCMInfoRefCount == 0) { - CP_verbose( - Stream, PerStepVerbose, - "Reference count now zero, Destroying process SST info cache\n"); + CP_verbose(Stream, PerStepVerbose, + "Reference count now zero, Destroying process SST info cache\n"); CManager_close(SharedCMInfo->cm); FreeCustomStructs(&SharedCMInfo->CustomStructs); CP_verbose(Stream, PerStepVerbose, "Freeing LastCallList\n"); @@ -1409,15 +1268,13 @@ extern void SstStreamDestroy(SstStream Stream) CP_SstParamsList = NULL; } pthread_mutex_unlock(&StateMutex); - CP_verbose(&StackStream, PerStepVerbose, - "SstStreamDestroy successful, returning\n"); + CP_verbose(&StackStream, PerStepVerbose, "SstStreamDestroy successful, returning\n"); } extern char *CP_GetContactString(SstStream Stream, attr_list DPAttrs) { attr_list ListenList = create_attr_list(), ContactList; - set_string_attr(ListenList, CM_TRANSPORT_ATOM, - strdup(Stream->ConfigParams->ControlTransport)); + set_string_attr(ListenList, CM_TRANSPORT_ATOM, strdup(Stream->ConfigParams->ControlTransport)); if (Stream->ConfigParams->ControlInterface) { set_string_attr(ListenList, attr_atom_from_string("IP_INTERFACE"), @@ -1428,10 +1285,8 @@ extern char *CP_GetContactString(SstStream Stream, attr_list DPAttrs) set_string_attr(ListenList, IP_INTERFACE_ATOM, strdup(Stream->ConfigParams->NetworkInterface)); } - ContactList = - CMget_specific_contact_list(Stream->CPInfo->SharedCM->cm, ListenList); - ContactList = - CMderef_and_copy_list(Stream->CPInfo->SharedCM->cm, ContactList); + ContactList = CMget_specific_contact_list(Stream->CPInfo->SharedCM->cm, ListenList); + ContactList = CMderef_and_copy_list(Stream->CPInfo->SharedCM->cm, ContactList); if (strcmp(Stream->ConfigParams->ControlTransport, "enet") == 0) { set_int_attr(ContactList, CM_ENET_CONN_TIMEOUT, 60000); /* 60 seconds */ @@ -1510,10 +1365,8 @@ extern CP_Info CP_getCPInfo(char *ControlModule) free((void *)CP_SstParamsList[i].field_type); CP_SstParamsList[i].field_type = strdup("integer"); } - else if ((strcmp(CP_SstParamsList[i].field_type, "char*") == - 0) || - (strcmp(CP_SstParamsList[i].field_type, "char *") == - 0)) + else if ((strcmp(CP_SstParamsList[i].field_type, "char*") == 0) || + (strcmp(CP_SstParamsList[i].field_type, "char *") == 0)) { free((void *)CP_SstParamsList[i].field_type); CP_SstParamsList[i].field_type = strdup("string"); @@ -1522,25 +1375,19 @@ extern CP_Info CP_getCPInfo(char *ControlModule) } } int i; - for (i = 0; i < sizeof(CP_DP_WriterArrayStructs) / - sizeof(CP_DP_WriterArrayStructs[0]); - i++) + for (i = 0; i < sizeof(CP_DP_WriterArrayStructs) / sizeof(CP_DP_WriterArrayStructs[0]); i++) { if (CP_DP_WriterArrayStructs[i].format_name && - (strcmp(CP_DP_WriterArrayStructs[i].format_name, "SstParams") == - 0)) + (strcmp(CP_DP_WriterArrayStructs[i].format_name, "SstParams") == 0)) { CP_DP_WriterArrayStructs[i].field_list = CP_SstParamsList; } } - for (i = 0; i < sizeof(CP_WriterResponseStructs) / - sizeof(CP_WriterResponseStructs[0]); - i++) + for (i = 0; i < sizeof(CP_WriterResponseStructs) / sizeof(CP_WriterResponseStructs[0]); i++) { if (CP_WriterResponseStructs[i].format_name && - (strcmp(CP_WriterResponseStructs[i].format_name, "SstParams") == - 0)) + (strcmp(CP_WriterResponseStructs[i].format_name, "SstParams") == 0)) { CP_WriterResponseStructs[i].field_list = CP_SstParamsList; } @@ -1571,8 +1418,7 @@ SstStream CP_newStream() Stream->CloseTimestepCount = (size_t)-1; Stream->LastDemandTimestep = (size_t)-1; Stream->LastReleasedTimestep = -1; - Stream->DiscardPriorTimestep = - -1; // Timesteps prior to this discarded/released upon arrival + Stream->DiscardPriorTimestep = -1; // Timesteps prior to this discarded/released upon arrival Stream->CPVerbosityLevel = CriticalVerbose; Stream->DPVerbosityLevel = CriticalVerbose; if ((CPEnvValue = getenv("SstVerbose"))) @@ -1596,13 +1442,12 @@ SstStream CP_newStream() static void DP_verbose(SstStream Stream, int Level, char *Format, ...); static CManager CP_getCManager(SstStream Stream); -static int CP_sendToPeer(SstStream Stream, CP_PeerCohort cohort, int rank, - CMFormat Format, void *data); +static int CP_sendToPeer(SstStream Stream, CP_PeerCohort cohort, int rank, CMFormat Format, + void *data); static SMPI_Comm CP_getMPIComm(SstStream Stream); -struct _CP_Services Svcs = { - (CP_VerboseFunc)DP_verbose, (CP_GetCManagerFunc)CP_getCManager, - (CP_SendToPeerFunc)CP_sendToPeer, (CP_GetMPICommFunc)CP_getMPIComm}; +struct _CP_Services Svcs = {(CP_VerboseFunc)DP_verbose, (CP_GetCManagerFunc)CP_getCManager, + (CP_SendToPeerFunc)CP_sendToPeer, (CP_GetMPICommFunc)CP_getMPIComm}; static int *PeerArray(int MySize, int MyRank, int PeerSize) { @@ -1626,8 +1471,7 @@ static int *PeerArray(int MySize, int MyRank, int PeerSize) return MyPeers; } -static int *reversePeerArray(int MySize, int MyRank, int PeerSize, - int *forward_entry) +static int *reversePeerArray(int MySize, int MyRank, int PeerSize, int *forward_entry) { int PeerCount = 0; int *ReversePeers = malloc(sizeof(int)); @@ -1642,8 +1486,7 @@ static int *reversePeerArray(int MySize, int MyRank, int PeerSize, { if (their_peers[j] == MyRank) { - ReversePeers = - realloc(ReversePeers, (PeerCount + 2) * sizeof(int)); + ReversePeers = realloc(ReversePeers, (PeerCount + 2) * sizeof(int)); ReversePeers[PeerCount] = i; PeerCount++; if (j == 0) @@ -1657,8 +1500,8 @@ static int *reversePeerArray(int MySize, int MyRank, int PeerSize, return ReversePeers; } -extern void getPeerArrays(int MySize, int MyRank, int PeerSize, - int **forwardArray, int **reverseArray) +extern void getPeerArrays(int MySize, int MyRank, int PeerSize, int **forwardArray, + int **reverseArray) { if (MySize < PeerSize) { @@ -1682,8 +1525,7 @@ extern void getPeerArrays(int MySize, int MyRank, int PeerSize, int *reverse; *forwardArray = malloc(sizeof(int) * 2); (*forwardArray)[1] = -1; - reverse = - reversePeerArray(MySize, MyRank, PeerSize, &((*forwardArray)[0])); + reverse = reversePeerArray(MySize, MyRank, PeerSize, &((*forwardArray)[0])); if (reverseArray) { *reverseArray = reverse; @@ -1725,8 +1567,7 @@ static void DP_verbose(SstStream s, int Level, char *Format, ...) } } -extern void CP_verbose(SstStream s, enum VerbosityLevel Level, char *Format, - ...) +extern void CP_verbose(SstStream s, enum VerbosityLevel Level, char *Format, ...) { if (s->CPVerbosityLevel >= (int)Level) { @@ -1772,40 +1613,30 @@ extern void CP_error(SstStream s, char *Format, ...) va_end(Args); } -static CManager CP_getCManager(SstStream Stream) -{ - return Stream->CPInfo->SharedCM->cm; -} +static CManager CP_getCManager(SstStream Stream) { return Stream->CPInfo->SharedCM->cm; } static SMPI_Comm CP_getMPIComm(SstStream Stream) { return Stream->mpiComm; } -extern void WriterConnCloseHandler(CManager cm, CMConnection closed_conn, - void *client_data); -extern void ReaderConnCloseHandler(CManager cm, CMConnection ClosedConn, - void *client_data); -static int CP_sendToPeer(SstStream s, CP_PeerCohort Cohort, int Rank, - CMFormat Format, void *Data) +extern void WriterConnCloseHandler(CManager cm, CMConnection closed_conn, void *client_data); +extern void ReaderConnCloseHandler(CManager cm, CMConnection ClosedConn, void *client_data); +static int CP_sendToPeer(SstStream s, CP_PeerCohort Cohort, int Rank, CMFormat Format, void *Data) { CP_PeerConnection *Peers = (CP_PeerConnection *)Cohort; if (Peers[Rank].CMconn == NULL) { - Peers[Rank].CMconn = - CMget_conn(s->CPInfo->SharedCM->cm, Peers[Rank].ContactList); + Peers[Rank].CMconn = CMget_conn(s->CPInfo->SharedCM->cm, Peers[Rank].ContactList); if (!Peers[Rank].CMconn) { - CP_error(s, - "Connection failed in CP_sendToPeer! Contact list was:\n"); + CP_error(s, "Connection failed in CP_sendToPeer! Contact list was:\n"); CP_error(s, attr_list_to_string(Peers[Rank].ContactList)); return 0; } if (s->Role == ReaderRole) { - CP_verbose( - s, TraceVerbose, - "Registering reader close handler for peer %d CONNECTION %p\n", - Rank, Peers[Rank].CMconn); - CMconn_register_close_handler(Peers[Rank].CMconn, - ReaderConnCloseHandler, (void *)s); + CP_verbose(s, TraceVerbose, + "Registering reader close handler for peer %d CONNECTION %p\n", Rank, + Peers[Rank].CMconn); + CMconn_register_close_handler(Peers[Rank].CMconn, ReaderConnCloseHandler, (void *)s); } else { @@ -1817,8 +1648,7 @@ static int CP_sendToPeer(SstStream s, CP_PeerCohort Cohort, int Rank, "Registering writer close handler for peer %d, " "CONNECTION %p\n", Rank, Peers[Rank].CMconn); - CMconn_register_close_handler(Peers[Rank].CMconn, - WriterConnCloseHandler, + CMconn_register_close_handler(Peers[Rank].CMconn, WriterConnCloseHandler, (void *)s->Readers[i]); break; } @@ -1839,7 +1669,4 @@ static int CP_sendToPeer(SstStream s, CP_PeerCohort Cohort, int Rank, CPNetworkInfoFunc globalNetinfoCallback = NULL; char *IPDiagString = NULL; -extern void SSTSetNetworkCallback(CPNetworkInfoFunc callback) -{ - globalNetinfoCallback = callback; -} +extern void SSTSetNetworkCallback(CPNetworkInfoFunc callback) { globalNetinfoCallback = callback; } diff --git a/source/adios2/toolkit/sst/cp/cp_internal.h b/source/adios2/toolkit/sst/cp/cp_internal.h index 5db5fc2f67..aac69cd0d2 100644 --- a/source/adios2/toolkit/sst/cp/cp_internal.h +++ b/source/adios2/toolkit/sst/cp/cp_internal.h @@ -529,86 +529,72 @@ extern void FinalizeCPInfo(CP_Info Info, CP_DP_Interface DPInfo); extern CP_Info CP_getCPInfo(char *ControlModule); extern char *CP_GetContactString(SstStream s, attr_list DPAttrs); extern SstStream CP_newStream(); -extern void SstInternalProvideTimestep( - SstStream s, SstData LocalMetadata, SstData Data, long Timestep, - FFSFormatList Formats, DataFreeFunc FreeTimestep, void *FreeClientData, - SstData AttributeData, DataFreeFunc FreeAttributeData, - void *FreeAttributeClientData); - -void **CP_consolidateDataToRankZero(SstStream stream, void *local_info, - FFSTypeHandle type, void **ret_data_block); -void **CP_consolidateDataToAll(SstStream stream, void *local_info, - FFSTypeHandle type, void **ret_data_block); -void *CP_distributeDataFromRankZero(SstStream stream, void *root_info, - FFSTypeHandle type, void **ret_data_block); -extern void CP_DPQueryHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_data, attr_list attrs); -extern void CP_DPQueryResponseHandler(CManager cm, CMConnection conn, - void *msg_v, void *client_data, - attr_list attrs); -extern void CP_ReaderRegisterHandler(CManager cm, CMConnection conn, - void *msg_v, void *client_data, +extern void SstInternalProvideTimestep(SstStream s, SstData LocalMetadata, SstData Data, + long Timestep, FFSFormatList Formats, + DataFreeFunc FreeTimestep, void *FreeClientData, + SstData AttributeData, DataFreeFunc FreeAttributeData, + void *FreeAttributeClientData); + +void **CP_consolidateDataToRankZero(SstStream stream, void *local_info, FFSTypeHandle type, + void **ret_data_block); +void **CP_consolidateDataToAll(SstStream stream, void *local_info, FFSTypeHandle type, + void **ret_data_block); +void *CP_distributeDataFromRankZero(SstStream stream, void *root_info, FFSTypeHandle type, + void **ret_data_block); +extern void CP_DPQueryHandler(CManager cm, CMConnection conn, void *msg_v, void *client_data, + attr_list attrs); +extern void CP_DPQueryResponseHandler(CManager cm, CMConnection conn, void *msg_v, + void *client_data, attr_list attrs); +extern void CP_ReaderRegisterHandler(CManager cm, CMConnection conn, void *msg_v, void *client_data, attr_list attrs); -extern void CP_WriterResponseHandler(CManager cm, CMConnection conn, - void *msg_v, void *client_data, +extern void CP_WriterResponseHandler(CManager cm, CMConnection conn, void *msg_v, void *client_data, attr_list attrs); -extern void CP_PeerSetupHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_data, attr_list attrs); -extern void CP_ReaderActivateHandler(CManager cm, CMConnection conn, - void *msg_v, void *client_data, +extern void CP_PeerSetupHandler(CManager cm, CMConnection conn, void *msg_v, void *client_data, + attr_list attrs); +extern void CP_ReaderActivateHandler(CManager cm, CMConnection conn, void *msg_v, void *client_data, attr_list attrs); -extern void CP_ReaderRequestStepHandler(CManager cm, CMConnection conn, - void *msg_v, void *client_data, - attr_list attrs); -extern void CP_TimestepMetadataHandler(CManager cm, CMConnection conn, - void *msg_v, void *client_data, - attr_list attrs); -extern void CP_ReleaseTimestepHandler(CManager cm, CMConnection conn, - void *msg_v, void *client_data, - attr_list attrs); -extern void CP_LockReaderDefinitionsHandler(CManager cm, CMConnection conn, - void *Msg_v, void *client_data, - attr_list attrs); -extern void CP_CommPatternLockedHandler(CManager cm, CMConnection conn, - void *Msg_v, void *client_data, - attr_list attrs); -extern void CP_WriterCloseHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_data, attr_list attrs); -extern void CP_ReaderCloseHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_data, attr_list attrs); +extern void CP_ReaderRequestStepHandler(CManager cm, CMConnection conn, void *msg_v, + void *client_data, attr_list attrs); +extern void CP_TimestepMetadataHandler(CManager cm, CMConnection conn, void *msg_v, + void *client_data, attr_list attrs); +extern void CP_ReleaseTimestepHandler(CManager cm, CMConnection conn, void *msg_v, + void *client_data, attr_list attrs); +extern void CP_LockReaderDefinitionsHandler(CManager cm, CMConnection conn, void *Msg_v, + void *client_data, attr_list attrs); +extern void CP_CommPatternLockedHandler(CManager cm, CMConnection conn, void *Msg_v, + void *client_data, attr_list attrs); +extern void CP_WriterCloseHandler(CManager cm, CMConnection conn, void *msg_v, void *client_data, + attr_list attrs); +extern void CP_ReaderCloseHandler(CManager cm, CMConnection conn, void *msg_v, void *client_data, + attr_list attrs); extern void FFSMarshalInstallMetadata(SstStream Stream, TSMetadataMsg MetaData); -extern void FFSMarshalInstallPreciousMetadata(SstStream Stream, - TSMetadataMsg MetaData); +extern void FFSMarshalInstallPreciousMetadata(SstStream Stream, TSMetadataMsg MetaData); extern void FFSClearTimestepData(SstStream Stream); extern void FFSFreeMarshalData(SstStream Stream); -extern void getPeerArrays(int MySize, int MyRank, int PeerSize, - int **forwardArray, int **reverseArray); +extern void getPeerArrays(int MySize, int MyRank, int PeerSize, int **forwardArray, + int **reverseArray); extern void AddToLastCallFreeList(void *Block); enum VerbosityLevel { NoVerbose = 0, // Generally no output (but not absolutely quiet?) CriticalVerbose = 1, // Informational output for failures only - SummaryVerbose = - 2, // One-time summary output containing general info (transports used, - // timestep count, stream duration, etc.) - PerStepVerbose = 3, // One-per-step info, generally from rank 0 (metadata - // read, Begin/EndStep verbosity, etc.) - PerRankVerbose = 4, // Per-step info from each rank (for those things that - // might be different per rank). - TraceVerbose = 5, // All debugging available + SummaryVerbose = 2, // One-time summary output containing general info (transports used, + // timestep count, stream duration, etc.) + PerStepVerbose = 3, // One-per-step info, generally from rank 0 (metadata + // read, Begin/EndStep verbosity, etc.) + PerRankVerbose = 4, // Per-step info from each rank (for those things that + // might be different per rank). + TraceVerbose = 5, // All debugging available }; -extern void CP_verbose(SstStream Stream, enum VerbosityLevel Level, - char *Format, ...); +extern void CP_verbose(SstStream Stream, enum VerbosityLevel Level, char *Format, ...); extern void CP_error(SstStream Stream, char *Format, ...); extern struct _CP_Services Svcs; -extern void CP_dumpParams(SstStream Stream, struct _SstParams *Params, - int ReaderSide); +extern void CP_dumpParams(SstStream Stream, struct _SstParams *Params, int ReaderSide); -typedef void (*CPNetworkInfoFunc)(int dataID, const char *net_string, - const char *data_string); +typedef void (*CPNetworkInfoFunc)(int dataID, const char *net_string, const char *data_string); extern char *IPDiagString; extern CPNetworkInfoFunc globalNetinfoCallback; extern void SSTSetNetworkCallback(CPNetworkInfoFunc callback); diff --git a/source/adios2/toolkit/sst/cp/cp_reader.c b/source/adios2/toolkit/sst/cp/cp_reader.c index b3bdf86c45..ed58f0da42 100644 --- a/source/adios2/toolkit/sst/cp/cp_reader.c +++ b/source/adios2/toolkit/sst/cp/cp_reader.c @@ -22,72 +22,66 @@ #define gettid() pthread_self() #ifdef MUTEX_DEBUG -#define STREAM_MUTEX_LOCK(Stream) \ - { \ - fprintf(stderr, "(PID %lx, TID %lx) CP_READER Trying lock line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - pthread_mutex_lock(&Stream->DataLock); \ - Stream->Locked++; \ - fprintf(stderr, "(PID %lx, TID %lx) CP_READER Got lock\n", \ - (long)getpid(), (long)gettid()); \ - } - -#define STREAM_MUTEX_UNLOCK(Stream) \ - { \ - fprintf(stderr, "(PID %lx, TID %lx) CP_READER UNlocking line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - Stream->Locked--; \ - pthread_mutex_unlock(&Stream->DataLock); \ - } -#define STREAM_CONDITION_WAIT(Stream) \ - { \ - fprintf( \ - stderr, \ - "(PID %lx, TID %lx) CP_READER Dropping Condition Lock line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - Stream->Locked = 0; \ - pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ - fprintf( \ - stderr, \ - "(PID %lx, TID %lx) CP_READER Acquired Condition Lock line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - Stream->Locked = 1; \ - } -#define STREAM_CONDITION_SIGNAL(Stream) \ - { \ - assert(Stream->Locked == 1); \ - fprintf(stderr, \ - "(PID %lx, TID %lx) CP_READER Signalling Condition line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - pthread_cond_signal(&Stream->DataCondition); \ - } - -#define STREAM_ASSERT_LOCKED(Stream) \ - { \ - assert(Stream->Locked == 1); \ +#define STREAM_MUTEX_LOCK(Stream) \ + { \ + fprintf(stderr, "(PID %lx, TID %lx) CP_READER Trying lock line %d\n", (long)getpid(), \ + (long)gettid(), __LINE__); \ + pthread_mutex_lock(&Stream->DataLock); \ + Stream->Locked++; \ + fprintf(stderr, "(PID %lx, TID %lx) CP_READER Got lock\n", (long)getpid(), \ + (long)gettid()); \ + } + +#define STREAM_MUTEX_UNLOCK(Stream) \ + { \ + fprintf(stderr, "(PID %lx, TID %lx) CP_READER UNlocking line %d\n", (long)getpid(), \ + (long)gettid(), __LINE__); \ + Stream->Locked--; \ + pthread_mutex_unlock(&Stream->DataLock); \ + } +#define STREAM_CONDITION_WAIT(Stream) \ + { \ + fprintf(stderr, "(PID %lx, TID %lx) CP_READER Dropping Condition Lock line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + Stream->Locked = 0; \ + pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ + fprintf(stderr, "(PID %lx, TID %lx) CP_READER Acquired Condition Lock line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + Stream->Locked = 1; \ + } +#define STREAM_CONDITION_SIGNAL(Stream) \ + { \ + assert(Stream->Locked == 1); \ + fprintf(stderr, "(PID %lx, TID %lx) CP_READER Signalling Condition line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + pthread_cond_signal(&Stream->DataCondition); \ + } + +#define STREAM_ASSERT_LOCKED(Stream) \ + { \ + assert(Stream->Locked == 1); \ } #else -#define STREAM_MUTEX_LOCK(Stream) \ - { \ - pthread_mutex_lock(&Stream->DataLock); \ +#define STREAM_MUTEX_LOCK(Stream) \ + { \ + pthread_mutex_lock(&Stream->DataLock); \ } -#define STREAM_MUTEX_UNLOCK(Stream) \ - { \ - pthread_mutex_unlock(&Stream->DataLock); \ +#define STREAM_MUTEX_UNLOCK(Stream) \ + { \ + pthread_mutex_unlock(&Stream->DataLock); \ } -#define STREAM_CONDITION_WAIT(Stream) \ - { \ - pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ +#define STREAM_CONDITION_WAIT(Stream) \ + { \ + pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ } -#define STREAM_CONDITION_SIGNAL(Stream) \ - { \ - pthread_cond_signal(&Stream->DataCondition); \ +#define STREAM_CONDITION_SIGNAL(Stream) \ + { \ + pthread_cond_signal(&Stream->DataCondition); \ } #define STREAM_ASSERT_LOCKED(Stream) #endif -static char *readContactInfoFile(const char *Name, SstStream Stream, - int Timeout) +static char *readContactInfoFile(const char *Name, SstStream Stream, int Timeout) { size_t len = strlen(Name) + strlen(SST_POSTFIX) + 1; char *FileName = malloc(len); @@ -99,8 +93,7 @@ static char *readContactInfoFile(const char *Name, SstStream Stream, long SleepInterval = 100000; snprintf(FileName, len, "%s" SST_POSTFIX, Name); CP_verbose(Stream, PerRankVerbose, - "Looking for writer contact in file %s, with timeout %d secs\n", - FileName, Timeout); + "Looking for writer contact in file %s, with timeout %d secs\n", FileName, Timeout); redo: WriterInfo = fopen(FileName, "r"); while (!WriterInfo) @@ -148,8 +141,7 @@ static char *readContactInfoFile(const char *Name, SstStream Stream, char Tmp[strlen(SSTMAGICV0)]; if (fread(Tmp, strlen(SSTMAGICV0), 1, WriterInfo) != 1) { - fprintf(stderr, - "Filesystem read failed in SST Open, failing operation\n"); + fprintf(stderr, "Filesystem read failed in SST Open, failing operation\n"); fclose(WriterInfo); Badfile++; } @@ -161,9 +153,7 @@ static char *readContactInfoFile(const char *Name, SstStream Stream, } if (Badfile) { - fprintf(stderr, - "!!! File %s is not an ADIOS2 SST Engine Contact file\n", - FileName); + fprintf(stderr, "!!! File %s is not an ADIOS2 SST Engine Contact file\n", FileName); free(FileName); fclose(WriterInfo); return NULL; @@ -172,8 +162,7 @@ static char *readContactInfoFile(const char *Name, SstStream Stream, char *Buffer = calloc(1, Size + 1); if (fread(Buffer, Size, 1, WriterInfo) != 1) { - fprintf(stderr, - "Filesystem read failed in SST Open, failing operation\n"); + fprintf(stderr, "Filesystem read failed in SST Open, failing operation\n"); free(Buffer); fclose(WriterInfo); return NULL; @@ -217,8 +206,7 @@ static char *readContactInfo(const char *Name, SstStream Stream, int Timeout) // ReaderConnCloseHandler is called by the network handler thread in // response to the failure of a network connection to the writer. -extern void ReaderConnCloseHandler(CManager cm, CMConnection ClosedConn, - void *client_data) +extern void ReaderConnCloseHandler(CManager cm, CMConnection ClosedConn, void *client_data) { PERFSTUBS_TIMER_START_FUNC(timer); SstStream Stream = (SstStream)client_data; @@ -240,8 +228,7 @@ extern void ReaderConnCloseHandler(CManager cm, CMConnection ClosedConn, if (Stream->Status == Established) { - if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && - (Stream->Rank != 0)) + if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && (Stream->Rank != 0)) { CP_verbose(Stream, PerRankVerbose, "Reader-side Rank received a " @@ -267,15 +254,13 @@ extern void ReaderConnCloseHandler(CManager cm, CMConnection ClosedConn, STREAM_CONDITION_SIGNAL(Stream); } } - CP_verbose( - Stream, PerRankVerbose, - "The close was for connection to writer peer %d, notifying DP\n", - FailedPeerRank); + CP_verbose(Stream, PerRankVerbose, + "The close was for connection to writer peer %d, notifying DP\n", + FailedPeerRank); STREAM_MUTEX_UNLOCK(Stream); /* notify DP of failure. This should terminate any waits currently * pending in the DP for that rank */ - Stream->DP_Interface->notifyConnFailure(&Svcs, Stream->DP_Stream, - FailedPeerRank); + Stream->DP_Interface->notifyConnFailure(&Svcs, Stream->DP_Stream, FailedPeerRank); } else if (Stream->Status == PeerClosed) { @@ -291,17 +276,15 @@ extern void ReaderConnCloseHandler(CManager cm, CMConnection ClosedConn, } else if (Stream->Status == PeerFailed) { - CP_verbose( - Stream, PerRankVerbose, - "Reader-side Rank received a " - "connection-close event after PeerFailed, already notified DP \n"); + CP_verbose(Stream, PerRankVerbose, + "Reader-side Rank received a " + "connection-close event after PeerFailed, already notified DP \n"); // Don't notify DP, because we already have */ STREAM_MUTEX_UNLOCK(Stream); } else { - CP_verbose(Stream, CriticalVerbose, - "Got an unexpected connection close event\n"); + CP_verbose(Stream, CriticalVerbose, "Got an unexpected connection close event\n"); CP_verbose(Stream, PerStepVerbose, "Reader-side Rank received a " "connection-close event in unexpected " @@ -317,11 +300,9 @@ extern void ReaderConnCloseHandler(CManager cm, CMConnection ClosedConn, extern long SstCurrentStep(SstStream Stream) { return Stream->ReaderTimestep; } static void releasePriorTimesteps(SstStream Stream, long Latest); -static void sendOneToEachWriterRank(SstStream s, CMFormat f, void *Msg, - void **WS_StreamPtr); +static void sendOneToEachWriterRank(SstStream s, CMFormat f, void *Msg, void **WS_StreamPtr); -static void **ParticipateInReaderInitDataExchange(SstStream Stream, - void *dpInfo, +static void **ParticipateInReaderInitDataExchange(SstStream Stream, void *dpInfo, void **ret_data_block) { @@ -337,8 +318,7 @@ static void **ParticipateInReaderInitDataExchange(SstStream Stream, combined_init.DP_Info = dpInfo; pointers = (struct _CP_DP_PairInfo **)CP_consolidateDataToRankZero( - Stream, &combined_init, Stream->CPInfo->PerRankReaderInfoFormat, - ret_data_block); + Stream, &combined_init, Stream->CPInfo->PerRankReaderInfoFormat, ret_data_block); free(cpInfo.ContactInfo); return (void **)pointers; } @@ -349,8 +329,8 @@ static int HasAllPeers(SstStream Stream) if (!Stream->ConnectionsToWriter) { CP_verbose(Stream, PerRankVerbose, - "(PID %lx, TID %lx) Waiting for first Peer notification\n", - (long)gettid(), (long)getpid()); + "(PID %lx, TID %lx) Waiting for first Peer notification\n", (long)gettid(), + (long)getpid()); return 0; } i = 0; @@ -363,30 +343,27 @@ static int HasAllPeers(SstStream Stream) } if (StillWaiting == 0) { - CP_verbose(Stream, PerRankVerbose, - "Rank %d has all forward peer connections\n", Stream->Rank); + CP_verbose(Stream, PerRankVerbose, "Rank %d has all forward peer connections\n", + Stream->Rank); return 1; } else { - CP_verbose(Stream, PerRankVerbose, - "Rank %d waiting for %d forward peer connections\n", + CP_verbose(Stream, PerRankVerbose, "Rank %d waiting for %d forward peer connections\n", Stream->Rank, StillWaiting); return 0; } } -attr_list ContactWriter(SstStream Stream, char *Filename, SstParams Params, - SMPI_Comm comm, CMConnection *conn_p, - void **WriterFileID_p) +attr_list ContactWriter(SstStream Stream, char *Filename, SstParams Params, SMPI_Comm comm, + CMConnection *conn_p, void **WriterFileID_p) { int DataSize = 0; attr_list RetVal = NULL; if (Stream->Rank == 0) { - char *Writer0Contact = - readContactInfo(Filename, Stream, Params->OpenTimeoutSecs); + char *Writer0Contact = readContactInfo(Filename, Stream, Params->OpenTimeoutSecs); char *CMContactString = NULL; CMConnection conn = NULL; attr_list WriterRank0Contact; @@ -394,8 +371,7 @@ attr_list ContactWriter(SstStream Stream, char *Filename, SstParams Params, if (Writer0Contact) { - CMContactString = - malloc(strlen(Writer0Contact)); /* at least long enough */ + CMContactString = malloc(strlen(Writer0Contact)); /* at least long enough */ sscanf(Writer0Contact, "%p:%s", WriterFileID_p, CMContactString); // printf("Writer contact info is fileID %p, contact info // %s\n", @@ -404,8 +380,7 @@ attr_list ContactWriter(SstStream Stream, char *Filename, SstParams Params, if (globalNetinfoCallback) { - (globalNetinfoCallback)(1, CP_GetContactString(Stream, NULL), - IPDiagString); + (globalNetinfoCallback)(1, CP_GetContactString(Stream, NULL), IPDiagString); (globalNetinfoCallback)(2, CMContactString, NULL); } WriterRank0Contact = attr_list_from_string(CMContactString); @@ -425,8 +400,7 @@ attr_list ContactWriter(SstStream Stream, char *Filename, SstParams Params, SMPI_Bcast(&DataSize, 1, SMPI_INT, 0, Stream->mpiComm); if (DataSize != 0) { - SMPI_Bcast(CMContactString, DataSize, SMPI_CHAR, 0, - Stream->mpiComm); + SMPI_Bcast(CMContactString, DataSize, SMPI_CHAR, 0, Stream->mpiComm); RetVal = attr_list_from_string(CMContactString); } if (CMContactString) @@ -464,8 +438,7 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) char *Filename = strdup(Name); CMConnection rank0_to_rank0_conn = NULL; void *WriterFileID; - char NeededDataPlane[32] = { - 0}; // Don't name a data plane longer than 31 chars + char NeededDataPlane[32] = {0}; // Don't name a data plane longer than 31 chars Stream = CP_newStream(); Stream->Role = ReaderRole; @@ -484,8 +457,8 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) gettimeofday(&Start, NULL); - attr_list WriterContactAttributes = ContactWriter( - Stream, Filename, Params, comm, &rank0_to_rank0_conn, &WriterFileID); + attr_list WriterContactAttributes = + ContactWriter(Stream, Filename, Params, comm, &rank0_to_rank0_conn, &WriterFileID); if (WriterContactAttributes == NULL) { @@ -504,25 +477,21 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) DPQuery.WriterResponseCondition = CMCondition_get(Stream->CPInfo->SharedCM->cm, rank0_to_rank0_conn); - CMCondition_set_client_data(Stream->CPInfo->SharedCM->cm, - DPQuery.WriterResponseCondition, + CMCondition_set_client_data(Stream->CPInfo->SharedCM->cm, DPQuery.WriterResponseCondition, &NeededDataPlane[0]); - if (CMwrite(rank0_to_rank0_conn, - Stream->CPInfo->SharedCM->DPQueryFormat, &DPQuery) != 1) + if (CMwrite(rank0_to_rank0_conn, Stream->CPInfo->SharedCM->DPQueryFormat, &DPQuery) != 1) { - CP_verbose( - Stream, CriticalVerbose, - "DPQuery message failed to send to writer in SstReaderOpen\n"); + CP_verbose(Stream, CriticalVerbose, + "DPQuery message failed to send to writer in SstReaderOpen\n"); } /* wait for "go" from writer */ - CP_verbose( - Stream, PerRankVerbose, - "Waiting for writer DPResponse message in SstReadOpen(\"%s\")\n", - Filename, DPQuery.WriterResponseCondition); - int result = CMCondition_wait(Stream->CPInfo->SharedCM->cm, - DPQuery.WriterResponseCondition); + CP_verbose(Stream, PerRankVerbose, + "Waiting for writer DPResponse message in SstReadOpen(\"%s\")\n", Filename, + DPQuery.WriterResponseCondition); + int result = + CMCondition_wait(Stream->CPInfo->SharedCM->cm, DPQuery.WriterResponseCondition); if (result == 0) { fprintf(stderr, "The writer exited before contact could be made, " @@ -536,19 +505,16 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) // NeededDP should now contain the name of the dataplane the writer is // using - SMPI_Bcast(&NeededDataPlane[0], sizeof(NeededDataPlane), SMPI_CHAR, 0, - Stream->mpiComm); + SMPI_Bcast(&NeededDataPlane[0], sizeof(NeededDataPlane), SMPI_CHAR, 0, Stream->mpiComm); } else { - SMPI_Bcast(&NeededDataPlane[0], sizeof(NeededDataPlane), SMPI_CHAR, 0, - Stream->mpiComm); + SMPI_Bcast(&NeededDataPlane[0], sizeof(NeededDataPlane), SMPI_CHAR, 0, Stream->mpiComm); } { char *RequestedDP = Stream->ConfigParams->DataTransport; Stream->ConfigParams->DataTransport = strdup(&NeededDataPlane[0]); - Stream->DP_Interface = - SelectDP(&Svcs, Stream, Stream->ConfigParams, Stream->Rank); + Stream->DP_Interface = SelectDP(&Svcs, Stream, Stream->ConfigParams, Stream->Rank); if (Stream->DP_Interface) if (strcmp(Stream->DP_Interface->DPName, &NeededDataPlane[0]) != 0) { @@ -567,13 +533,12 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) FinalizeCPInfo(Stream->CPInfo, Stream->DP_Interface); Stream->DP_Stream = Stream->DP_Interface->initReader( - &Svcs, Stream, &dpInfo, Stream->ConfigParams, WriterContactAttributes, - &Stream->Stats); + &Svcs, Stream, &dpInfo, Stream->ConfigParams, WriterContactAttributes, &Stream->Stats); free_attr_list(WriterContactAttributes); - pointers = (struct _CP_DP_PairInfo **)ParticipateInReaderInitDataExchange( - Stream, dpInfo, &data_block); + pointers = + (struct _CP_DP_PairInfo **)ParticipateInReaderInitDataExchange(Stream, dpInfo, &data_block); if (Stream->Rank == 0) { @@ -592,27 +557,22 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) case SpecPreloadOff: case SpecPreloadOn: ReaderRegister.SpecPreload = - (SpeculativePreloadMode) - Stream->ConfigParams->SpeculativePreloadMode; + (SpeculativePreloadMode)Stream->ConfigParams->SpeculativePreloadMode; break; case SpecPreloadAuto: ReaderRegister.SpecPreload = SpecPreloadOff; - if (Stream->CohortSize <= - Stream->ConfigParams->SpecAutoNodeThreshold) + if (Stream->CohortSize <= Stream->ConfigParams->SpecAutoNodeThreshold) { ReaderRegister.SpecPreload = SpecPreloadOn; } break; } - ReaderRegister.CP_ReaderInfo = - malloc(ReaderRegister.ReaderCohortSize * sizeof(void *)); - ReaderRegister.DP_ReaderInfo = - malloc(ReaderRegister.ReaderCohortSize * sizeof(void *)); + ReaderRegister.CP_ReaderInfo = malloc(ReaderRegister.ReaderCohortSize * sizeof(void *)); + ReaderRegister.DP_ReaderInfo = malloc(ReaderRegister.ReaderCohortSize * sizeof(void *)); for (int i = 0; i < ReaderRegister.ReaderCohortSize; i++) { - ReaderRegister.CP_ReaderInfo[i] = - (CP_ReaderInitInfo)pointers[i]->CP_Info; + ReaderRegister.CP_ReaderInfo[i] = (CP_ReaderInitInfo)pointers[i]->CP_Info; ReaderRegister.DP_ReaderInfo[i] = pointers[i]->DP_Info; } free(pointers); @@ -620,11 +580,9 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) /* the response value is set in the handler */ volatile struct _WriterResponseMsg *response = NULL; CMCondition_set_client_data(Stream->CPInfo->SharedCM->cm, - ReaderRegister.WriterResponseCondition, - &response); + ReaderRegister.WriterResponseCondition, &response); - if (CMwrite(rank0_to_rank0_conn, - Stream->CPInfo->SharedCM->ReaderRegisterFormat, + if (CMwrite(rank0_to_rank0_conn, Stream->CPInfo->SharedCM->ReaderRegisterFormat, &ReaderRegister) != 1) { CP_verbose(Stream, CriticalVerbose, @@ -634,20 +592,18 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) free(ReaderRegister.DP_ReaderInfo); /* wait for "go" from writer */ - CP_verbose( - Stream, PerRankVerbose, - "Waiting for writer response message in SstReadOpen(\"%s\")\n", - Filename, ReaderRegister.WriterResponseCondition); - int result = CMCondition_wait(Stream->CPInfo->SharedCM->cm, - ReaderRegister.WriterResponseCondition); + CP_verbose(Stream, PerRankVerbose, + "Waiting for writer response message in SstReadOpen(\"%s\")\n", Filename, + ReaderRegister.WriterResponseCondition); + int result = + CMCondition_wait(Stream->CPInfo->SharedCM->cm, ReaderRegister.WriterResponseCondition); if (result == 0) { fprintf(stderr, "The writer exited before the SST Reader Open " "could be completed.\n"); return NULL; } - CP_verbose(Stream, PerRankVerbose, - "finished wait writer response message in read_open\n"); + CP_verbose(Stream, PerRankVerbose, "finished wait writer response message in read_open\n"); if (response) { @@ -658,14 +614,12 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) WriterData.DP_WriterInfo = response->DP_WriterInfo; } ReturnData = CP_distributeDataFromRankZero( - Stream, &WriterData, Stream->CPInfo->CombinedWriterInfoFormat, - &free_block); + Stream, &WriterData, Stream->CPInfo->CombinedWriterInfoFormat, &free_block); } else { ReturnData = CP_distributeDataFromRankZero( - Stream, NULL, Stream->CPInfo->CombinedWriterInfoFormat, - &free_block); + Stream, NULL, Stream->CPInfo->CombinedWriterInfoFormat, &free_block); } free(data_block); @@ -679,10 +633,8 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) if (Stream->Rank == 0) { - CP_verbose(Stream, SummaryVerbose, - "Opening Reader Stream.\nWriter stream params are:\n"); - CP_dumpParams(Stream, ReturnData->WriterConfigParams, - 0 /* writer side */); + CP_verbose(Stream, SummaryVerbose, "Opening Reader Stream.\nWriter stream params are:\n"); + CP_dumpParams(Stream, ReturnData->WriterConfigParams, 0 /* writer side */); CP_verbose(Stream, SummaryVerbose, "Reader stream params are:\n"); CP_dumpParams(Stream, Stream->ConfigParams, 1 /* reader side */); } @@ -694,27 +646,20 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) Stream->WriterCohortSize = ReturnData->WriterCohortSize; Stream->WriterConfigParams = ReturnData->WriterConfigParams; - if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) && - (Stream->Rank == 0)) + if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) && (Stream->Rank == 0)) { - CP_verbose(Stream, SummaryVerbose, - "Writer is doing FFS-based marshalling\n"); + CP_verbose(Stream, SummaryVerbose, "Writer is doing FFS-based marshalling\n"); } - if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalBP) && - (Stream->Rank == 0)) + if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalBP) && (Stream->Rank == 0)) { - CP_verbose(Stream, SummaryVerbose, - "Writer is doing BP-based marshalling\n"); + CP_verbose(Stream, SummaryVerbose, "Writer is doing BP-based marshalling\n"); } - if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && - (Stream->Rank == 0)) + if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && (Stream->Rank == 0)) { - CP_verbose( - Stream, SummaryVerbose, - "Writer is using Minimum Connection Communication pattern (min)\n"); + CP_verbose(Stream, SummaryVerbose, + "Writer is using Minimum Connection Communication pattern (min)\n"); } - if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) && - (Stream->Rank == 0)) + if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) && (Stream->Rank == 0)) { CP_verbose(Stream, SummaryVerbose, "Writer is using Peer-based Communication pattern (peer)\n"); @@ -727,8 +672,8 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) /* * Wait for connections and messages from writer side peers */ - getPeerArrays(Stream->CohortSize, Stream->Rank, - Stream->WriterCohortSize, &Stream->Peers, NULL); + getPeerArrays(Stream->CohortSize, Stream->Rank, Stream->WriterCohortSize, &Stream->Peers, + NULL); while (!HasAllPeers(Stream)) { @@ -748,11 +693,9 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) for (int i = 0; i < ReturnData->WriterCohortSize; i++) { - attr_list attrs = - attr_list_from_string(ReturnData->CP_WriterInfo[i]->ContactInfo); + attr_list attrs = attr_list_from_string(ReturnData->CP_WriterInfo[i]->ContactInfo); Stream->ConnectionsToWriter[i].ContactList = attrs; - Stream->ConnectionsToWriter[i].RemoteStreamID = - ReturnData->CP_WriterInfo[i]->WriterID; + Stream->ConnectionsToWriter[i].RemoteStreamID = ReturnData->CP_WriterInfo[i]->WriterID; } // Deref the original connection to writer rank 0 (might still be open as a @@ -772,8 +715,7 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) { CMConnection conn = rank0_to_rank0_conn; Stream->ConnectionsToWriter[0].CMconn = conn; - CMconn_register_close_handler(conn, ReaderConnCloseHandler, - (void *)Stream); + CMconn_register_close_handler(conn, ReaderConnCloseHandler, (void *)Stream); } } Stream->Status = Established; @@ -786,17 +728,15 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) STREAM_MUTEX_UNLOCK(Stream); AddToLastCallFreeList(Stream); Stream->DP_Interface->provideWriterDataToReader( - &Svcs, Stream->DP_Stream, ReturnData->WriterCohortSize, - Stream->ConnectionsToWriter, ReturnData->DP_WriterInfo); - CP_verbose(Stream, PerRankVerbose, - "Sending Reader Activate messages to writer\n"); + &Svcs, Stream->DP_Stream, ReturnData->WriterCohortSize, Stream->ConnectionsToWriter, + ReturnData->DP_WriterInfo); + CP_verbose(Stream, PerRankVerbose, "Sending Reader Activate messages to writer\n"); memset(&Msg, 0, sizeof(Msg)); - sendOneToEachWriterRank(Stream, - Stream->CPInfo->SharedCM->ReaderActivateFormat, - &Msg, &Msg.WSR_Stream); + sendOneToEachWriterRank(Stream, Stream->CPInfo->SharedCM->ReaderActivateFormat, &Msg, + &Msg.WSR_Stream); CP_verbose(Stream, PerStepVerbose, - "Finish opening Stream \"%s\", starting with Step number %d\n", - Filename, ReturnData->StartingStepNumber); + "Finish opening Stream \"%s\", starting with Step number %d\n", Filename, + ReturnData->StartingStepNumber); return Stream; } @@ -805,12 +745,10 @@ SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) // program thread. It can only be called after initialization and // only accesses data installed durinig initialization, it needs no // locking. -extern void SstReaderGetParams(SstStream Stream, - SstMarshalMethod *WriterMarshalMethod, +extern void SstReaderGetParams(SstStream Stream, SstMarshalMethod *WriterMarshalMethod, int *WriterIsRowMajor) { - *WriterMarshalMethod = - (SstMarshalMethod)Stream->WriterConfigParams->MarshalMethod; + *WriterMarshalMethod = (SstMarshalMethod)Stream->WriterConfigParams->MarshalMethod; *WriterIsRowMajor = Stream->WriterConfigParams->IsRowMajor; } @@ -819,25 +757,22 @@ extern void SstReaderGetParams(SstStream Stream, * response to incoming PeerSetup messages to setup the reader-side * Peer list */ -extern void CP_PeerSetupHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) +extern void CP_PeerSetupHandler(CManager cm, CMConnection conn, void *Msg_v, void *client_data, + attr_list attrs) { PERFSTUBS_TIMER_START_FUNC(timer); SstStream Stream; struct _PeerSetupMsg *Msg = (struct _PeerSetupMsg *)Msg_v; Stream = (SstStream)Msg->RS_Stream; STREAM_MUTEX_LOCK(Stream); - CP_verbose(Stream, TraceVerbose, - "Received peer setup from rank %d, conn %p\n", Msg->WriterRank, + CP_verbose(Stream, TraceVerbose, "Received peer setup from rank %d, conn %p\n", Msg->WriterRank, conn); if (!Stream->ConnectionsToWriter) { CP_verbose(Stream, TraceVerbose, "Allocating connections to writer\n"); - Stream->ConnectionsToWriter = - calloc(sizeof(CP_PeerConnection), Msg->WriterCohortSize); + Stream->ConnectionsToWriter = calloc(sizeof(CP_PeerConnection), Msg->WriterCohortSize); } - CP_verbose(Stream, TraceVerbose, - "Received peer setup from rank %d, conn %p\n", Msg->WriterRank, + CP_verbose(Stream, TraceVerbose, "Received peer setup from rank %d, conn %p\n", Msg->WriterRank, conn); if (Msg->WriterRank != -1) { @@ -851,8 +786,7 @@ extern void CP_PeerSetupHandler(CManager cm, CMConnection conn, void *Msg_v, PERFSTUBS_TIMER_STOP_FUNC(timer); } -void queueTimestepMetadataMsgAndNotify(SstStream Stream, - struct _TimestepMetadataMsg *tsm, +void queueTimestepMetadataMsgAndNotify(SstStream Stream, struct _TimestepMetadataMsg *tsm, CMConnection conn) { STREAM_ASSERT_LOCKED(Stream); @@ -872,9 +806,8 @@ void queueTimestepMetadataMsgAndNotify(SstStream Stream, "Sending ReleaseTimestep message for PRIOR DISCARD " "timestep %d, one to each writer\n", tsm->Timestep); - sendOneToEachWriterRank( - Stream, Stream->CPInfo->SharedCM->ReleaseTimestepFormat, &Msg, - &Msg.WSR_Stream); + sendOneToEachWriterRank(Stream, Stream->CPInfo->SharedCM->ReleaseTimestepFormat, &Msg, + &Msg.WSR_Stream); } else { @@ -913,8 +846,7 @@ void queueTimestepMetadataMsgAndNotify(SstStream Stream, tsm->Timestep); STREAM_CONDITION_SIGNAL(Stream); - if ((Stream->Rank == 0) && - (Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && + if ((Stream->Rank == 0) && (Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && (Stream->ConfigParams->AlwaysProvideLatestTimestep)) { /* @@ -940,17 +872,15 @@ struct _SstMetaMetaBlockInternal size_t IDSize; }; -void AddFormatsToMetaMetaInfo(SstStream Stream, - struct _TimestepMetadataMsg *Msg) +void AddFormatsToMetaMetaInfo(SstStream Stream, struct _TimestepMetadataMsg *Msg) { FFSFormatList Formats = Msg->Formats; STREAM_ASSERT_LOCKED(Stream); while (Formats) { Stream->InternalMetaMetaInfo = - realloc(Stream->InternalMetaMetaInfo, - (sizeof(struct _SstMetaMetaBlockInternal) * - (Stream->InternalMetaMetaCount + 1))); + realloc(Stream->InternalMetaMetaInfo, (sizeof(struct _SstMetaMetaBlockInternal) * + (Stream->InternalMetaMetaCount + 1))); struct _SstMetaMetaBlockInternal *NewInfo = &Stream->InternalMetaMetaInfo[Stream->InternalMetaMetaCount]; Stream->InternalMetaMetaCount++; @@ -960,20 +890,17 @@ void AddFormatsToMetaMetaInfo(SstStream Stream, NewInfo->BlockData = malloc(Formats->FormatServerRepLen); NewInfo->BlockSize = Formats->FormatServerRepLen; memcpy(NewInfo->ID, Formats->FormatIDRep, Formats->FormatIDRepLen); - memcpy(NewInfo->BlockData, Formats->FormatServerRep, - Formats->FormatServerRepLen); + memcpy(NewInfo->BlockData, Formats->FormatServerRep, Formats->FormatServerRepLen); Formats = Formats->Next; } } -void AddAttributesToAttrDataList(SstStream Stream, - struct _TimestepMetadataMsg *Msg) +void AddAttributesToAttrDataList(SstStream Stream, struct _TimestepMetadataMsg *Msg) { if (Stream->AttrsRetrieved) { int i = 0; - while (Stream->InternalAttrDataInfo && - Stream->InternalAttrDataInfo[i].BlockData) + while (Stream->InternalAttrDataInfo && Stream->InternalAttrDataInfo[i].BlockData) { free(Stream->InternalAttrDataInfo[i].BlockData); i++; @@ -986,40 +913,35 @@ void AddAttributesToAttrDataList(SstStream Stream, if (Msg->AttributeData->DataSize == 0) return; - Stream->InternalAttrDataInfo = realloc( - Stream->InternalAttrDataInfo, - (sizeof(struct _SstBlock) * (Stream->InternalAttrDataCount + 2))); - struct _SstBlock *NewInfo = - &Stream->InternalAttrDataInfo[Stream->InternalAttrDataCount]; + Stream->InternalAttrDataInfo = + realloc(Stream->InternalAttrDataInfo, + (sizeof(struct _SstBlock) * (Stream->InternalAttrDataCount + 2))); + struct _SstBlock *NewInfo = &Stream->InternalAttrDataInfo[Stream->InternalAttrDataCount]; Stream->InternalAttrDataCount++; NewInfo->BlockData = malloc(Msg->AttributeData->DataSize); NewInfo->BlockSize = Msg->AttributeData->DataSize; - memcpy(NewInfo->BlockData, Msg->AttributeData->block, - Msg->AttributeData->DataSize); + memcpy(NewInfo->BlockData, Msg->AttributeData->block, Msg->AttributeData->DataSize); memset(&Stream->InternalAttrDataInfo[Stream->InternalAttrDataCount], 0, sizeof(struct _SstData)); } // CP_TimestepMetadataHandler is called by the network handler thread // to handle incoming TimestepMetadata messages -void CP_TimestepMetadataHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) +void CP_TimestepMetadataHandler(CManager cm, CMConnection conn, void *Msg_v, void *client_data, + attr_list attrs) { PERFSTUBS_TIMER_START_FUNC(timer); SstStream Stream; struct _TimestepMetadataMsg *Msg = (struct _TimestepMetadataMsg *)Msg_v; Stream = (SstStream)Msg->RS_Stream; STREAM_MUTEX_LOCK(Stream); - if ((Stream->Rank != 0) || - (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer)) + if ((Stream->Rank != 0) || (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer)) { /* All ranks are getting this */ if (Msg->Metadata == NULL) { - CP_verbose( - Stream, PerRankVerbose, - "Received a message that timestep %d has been discarded\n", - Msg->Timestep); + CP_verbose(Stream, PerRankVerbose, + "Received a message that timestep %d has been discarded\n", Msg->Timestep); /* * before discarding, install any precious metadata from this @@ -1040,10 +962,8 @@ void CP_TimestepMetadataHandler(CManager cm, CMConnection conn, void *Msg_v, } else { - CP_verbose( - Stream, PerStepVerbose, - "Received an incoming metadata message for timestep %d\n", - Msg->Timestep); + CP_verbose(Stream, PerStepVerbose, + "Received an incoming metadata message for timestep %d\n", Msg->Timestep); } /* arrange for this message data to stay around */ CMtake_buffer(cm, Msg); @@ -1069,8 +989,8 @@ void CP_TimestepMetadataHandler(CManager cm, CMConnection conn, void *Msg_v, // It will find rank0 writer in CMCondition_wait(). It's only action // is to associate the incoming response message to the CMcondition // we're waiting on,m so no locking is necessary. -void CP_WriterResponseHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) +void CP_WriterResponseHandler(CManager cm, CMConnection conn, void *Msg_v, void *client_data, + attr_list attrs) { PERFSTUBS_REGISTER_THREAD(); PERFSTUBS_TIMER_START_FUNC(timer); @@ -1092,8 +1012,7 @@ void CP_WriterResponseHandler(CManager cm, CMConnection conn, void *Msg_v, /* attach the message to the CMCondition so it an be retrieved by the main * thread */ - response_ptr = - CMCondition_get_client_data(cm, Msg->WriterResponseCondition); + response_ptr = CMCondition_get_client_data(cm, Msg->WriterResponseCondition); *response_ptr = Msg; /* wake the main thread */ @@ -1107,8 +1026,8 @@ void CP_WriterResponseHandler(CManager cm, CMConnection conn, void *Msg_v, // It will find rank0 writer in CMCondition_wait(). It's only action // is to associate the incoming response message to the CMcondition // we're waiting on,m so no locking is necessary. -void CP_DPQueryResponseHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) +void CP_DPQueryResponseHandler(CManager cm, CMConnection conn, void *Msg_v, void *client_data, + attr_list attrs) { PERFSTUBS_REGISTER_THREAD(); PERFSTUBS_TIMER_START_FUNC(timer); @@ -1128,8 +1047,7 @@ void CP_DPQueryResponseHandler(CManager cm, CMConnection conn, void *Msg_v, /* attach the message to the CMCondition so it an be retrieved by the main * thread */ - NeededDP_ptr = - CMCondition_get_client_data(cm, Msg->WriterResponseCondition); + NeededDP_ptr = CMCondition_get_client_data(cm, Msg->WriterResponseCondition); strcpy(NeededDP_ptr, Msg->OperativeDP); /* wake the main thread */ @@ -1143,8 +1061,8 @@ void CP_DPQueryResponseHandler(CManager cm, CMConnection conn, void *Msg_v, // It will find rank0 writer in CMCondition_wait(). It's only action // is to associate the incoming response message to the CMcondition // we're waiting on, so no locking is necessary. -extern void CP_WriterCloseHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) +extern void CP_WriterCloseHandler(CManager cm, CMConnection conn, void *Msg_v, void *client_data, + attr_list attrs) { PERFSTUBS_TIMER_START_FUNC(timer); WriterCloseMsg Msg = (WriterCloseMsg)Msg_v; @@ -1168,18 +1086,16 @@ extern void CP_WriterCloseHandler(CManager cm, CMConnection conn, void *Msg_v, // to handle CommPatternLocked messages. It can only be called // post-registration and won't be called after Close. Lock to protect // against race conditions in determining comm lock scenario. -extern void CP_CommPatternLockedHandler(CManager cm, CMConnection conn, - void *Msg_v, void *client_data, - attr_list attrs) +extern void CP_CommPatternLockedHandler(CManager cm, CMConnection conn, void *Msg_v, + void *client_data, attr_list attrs) { CommPatternLockedMsg Msg = (CommPatternLockedMsg)Msg_v; SstStream Stream = (SstStream)Msg->RS_Stream; STREAM_MUTEX_LOCK(Stream); - CP_verbose( - Stream, PerStepVerbose, - "Received a CommPatternLocked message, beginning with Timestep %d.\n", - Msg->Timestep); + CP_verbose(Stream, PerStepVerbose, + "Received a CommPatternLocked message, beginning with Timestep %d.\n", + Msg->Timestep); Stream->CommPatternLocked = 1; Stream->CommPatternLockedTimestep = Msg->Timestep; @@ -1205,8 +1121,7 @@ static long MaxQueuedMetadata(SstStream Stream) } Next = Next->Next; } - CP_verbose(Stream, TraceVerbose, "MaxQueued Timestep returning %ld\n", - MaxTimestep); + CP_verbose(Stream, TraceVerbose, "MaxQueued Timestep returning %ld\n", MaxTimestep); return MaxTimestep; } @@ -1229,8 +1144,7 @@ static long NextQueuedMetadata(SstStream Stream) } Next = Next->Next; } - CP_verbose(Stream, TraceVerbose, "NextQueued Timestep returning %ld\n", - MinTimestep); + CP_verbose(Stream, TraceVerbose, "NextQueued Timestep returning %ld\n", MinTimestep); return MinTimestep; } @@ -1256,14 +1170,12 @@ static void waitForMetadataWithTimeout(SstStream Stream, float timeout_secs) STREAM_ASSERT_LOCKED(Stream); gettimeofday(&start, NULL); Next = Stream->Timesteps; - CP_verbose( - Stream, PerRankVerbose, - "Wait for metadata with timeout %g secs starting at time %ld.%06ld \n", - timeout_secs, start.tv_sec, start.tv_usec); + CP_verbose(Stream, PerRankVerbose, + "Wait for metadata with timeout %g secs starting at time %ld.%06ld \n", timeout_secs, + start.tv_sec, start.tv_usec); if (Next) { - CP_verbose(Stream, PerRankVerbose, - "Returning from wait with timeout, NO TIMEOUT\n"); + CP_verbose(Stream, PerRankVerbose, "Returning from wait with timeout, NO TIMEOUT\n"); } end.tv_sec = start.tv_sec + timeout_int_sec; end.tv_usec = start.tv_usec + timeout_int_usec; @@ -1280,23 +1192,20 @@ static void waitForMetadataWithTimeout(SstStream Stream, float timeout_secs) // special case if (timeout_secs == 0.0) { - CP_verbose( - Stream, PerRankVerbose, - "Returning from wait With no data after zero timeout poll\n"); + CP_verbose(Stream, PerRankVerbose, + "Returning from wait With no data after zero timeout poll\n"); return; } - TimeoutTask = - CMadd_delayed_task(Stream->CPInfo->SharedCM->cm, timeout_int_sec, - timeout_int_usec, triggerDataCondition, Stream); + TimeoutTask = CMadd_delayed_task(Stream->CPInfo->SharedCM->cm, timeout_int_sec, + timeout_int_usec, triggerDataCondition, Stream); while (1) { Next = Stream->Timesteps; if (Next) { CMremove_task(TimeoutTask); - CP_verbose(Stream, PerRankVerbose, - "Returning from wait with timeout, NO TIMEOUT\n"); + CP_verbose(Stream, PerRankVerbose, "Returning from wait with timeout, NO TIMEOUT\n"); return; } if (Stream->Status != Established) @@ -1307,13 +1216,11 @@ static void waitForMetadataWithTimeout(SstStream Stream, float timeout_secs) return; } gettimeofday(&now, NULL); - CP_verbose(Stream, TraceVerbose, - "timercmp, now is %ld.%06ld end is %ld.%06ld \n", + CP_verbose(Stream, TraceVerbose, "timercmp, now is %ld.%06ld end is %ld.%06ld \n", now.tv_sec, now.tv_usec, end.tv_sec, end.tv_usec); if (timercmp(&now, &end, >)) { - CP_verbose(Stream, PerRankVerbose, - "Returning from wait after timing out\n"); + CP_verbose(Stream, PerRankVerbose, "Returning from wait after timing out\n"); return; } /* wait until we get the timestep metadata or something else changes */ @@ -1326,8 +1233,7 @@ static void releasePriorTimesteps(SstStream Stream, long Latest) { struct _TimestepMetadataList *Next, *Last; STREAM_ASSERT_LOCKED(Stream); - CP_verbose(Stream, PerRankVerbose, - "Releasing any timestep earlier than %d\n", Latest); + CP_verbose(Stream, PerRankVerbose, "Releasing any timestep earlier than %d\n", Latest); Next = Stream->Timesteps; Last = NULL; while (Next) @@ -1375,12 +1281,11 @@ static void releasePriorTimesteps(SstStream Stream, long Latest) Last->Next = Next; } STREAM_MUTEX_UNLOCK(Stream); - sendOneToEachWriterRank( - Stream, Stream->CPInfo->SharedCM->ReleaseTimestepFormat, &Msg, - &Msg.WSR_Stream); + sendOneToEachWriterRank(Stream, Stream->CPInfo->SharedCM->ReleaseTimestepFormat, &Msg, + &Msg.WSR_Stream); if (This->MetadataMsg == NULL) - printf("READER RETURN_BUFFER, metadatamsg == %p, line %d\n", - This->MetadataMsg, __LINE__); + printf("READER RETURN_BUFFER, metadatamsg == %p, line %d\n", This->MetadataMsg, + __LINE__); CMreturn_buffer(Stream->CPInfo->SharedCM->cm, This->MetadataMsg); STREAM_MUTEX_LOCK(Stream); free(This); @@ -1405,8 +1310,8 @@ static void FreeTimestep(SstStream Stream, long Timestep) { Stream->Timesteps = List->Next; if (List->MetadataMsg == NULL) - printf("READER RETURN_BUFFER, List->MEtadataMsg == %p, line %d\n", - List->MetadataMsg, __LINE__); + printf("READER RETURN_BUFFER, List->MEtadataMsg == %p, line %d\n", List->MetadataMsg, + __LINE__); CMreturn_buffer(Stream->CPInfo->SharedCM->cm, List->MetadataMsg); free(List); @@ -1424,8 +1329,7 @@ static void FreeTimestep(SstStream Stream, long Timestep) printf("READER RETURN_BUFFER, List->MEtadataMsg == %p, " "line %d\n", List->MetadataMsg, __LINE__); - CMreturn_buffer(Stream->CPInfo->SharedCM->cm, - List->MetadataMsg); + CMreturn_buffer(Stream->CPInfo->SharedCM->cm, List->MetadataMsg); free(List); break; @@ -1439,20 +1343,18 @@ static void FreeTimestep(SstStream Stream, long Timestep) static TSMetadataList waitForNextMetadata(SstStream Stream, long LastTimestep) { TSMetadataList FoundTS = NULL; - CP_verbose(Stream, PerRankVerbose, - "Wait for next metadata after last timestep %d\n", LastTimestep); + CP_verbose(Stream, PerRankVerbose, "Wait for next metadata after last timestep %d\n", + LastTimestep); while (1) { struct _TimestepMetadataList *Next; Next = Stream->Timesteps; while (Next) { - CP_verbose(Stream, TraceVerbose, - "Examining metadata for Timestep %d\n", + CP_verbose(Stream, TraceVerbose, "Examining metadata for Timestep %d\n", Next->MetadataMsg->Timestep); if (((Next->MetadataMsg->Metadata == NULL) || - (Next->MetadataMsg->Timestep < - Stream->DiscardPriorTimestep)) && + (Next->MetadataMsg->Timestep < Stream->DiscardPriorTimestep)) && (FoundTS == NULL)) { /* @@ -1469,11 +1371,9 @@ static TSMetadataList waitForNextMetadata(SstStream Stream, long LastTimestep) Next->MetadataMsg->Timestep); if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) { - FFSMarshalInstallPreciousMetadata(Stream, - Next->MetadataMsg); + FFSMarshalInstallPreciousMetadata(Stream, Next->MetadataMsg); } - else if (Stream->WriterConfigParams->MarshalMethod == - SstMarshalBP5) + else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) { AddFormatsToMetaMetaInfo(Stream, Next->MetadataMsg); AddAttributesToAttrDataList(Stream, Next->MetadataMsg); @@ -1485,14 +1385,13 @@ static TSMetadataList waitForNextMetadata(SstStream Stream, long LastTimestep) } if (Next->MetadataMsg->Timestep >= LastTimestep) { - if ((FoundTS == NULL) && - (Next->MetadataMsg->Timestep > LastTimestep)) + if ((FoundTS == NULL) && (Next->MetadataMsg->Timestep > LastTimestep)) { FoundTS = Next; break; } - else if ((FoundTS != NULL) && (FoundTS->MetadataMsg->Timestep > - Next->MetadataMsg->Timestep)) + else if ((FoundTS != NULL) && + (FoundTS->MetadataMsg->Timestep > Next->MetadataMsg->Timestep)) { FoundTS = Next; break; @@ -1502,19 +1401,16 @@ static TSMetadataList waitForNextMetadata(SstStream Stream, long LastTimestep) } if (FoundTS) { - CP_verbose(Stream, PerRankVerbose, - "Returning metadata for Timestep %d\n", + CP_verbose(Stream, PerRankVerbose, "Returning metadata for Timestep %d\n", FoundTS->MetadataMsg->Timestep); Stream->CurrentWorkingTimestep = FoundTS->MetadataMsg->Timestep; return FoundTS; } /* didn't find a good next timestep, check Stream status */ if ((Stream->Status != Established) || - ((Stream->FinalTimestep != INT_MAX) && - (Stream->FinalTimestep >= LastTimestep))) + ((Stream->FinalTimestep != INT_MAX) && (Stream->FinalTimestep >= LastTimestep))) { - CP_verbose(Stream, TraceVerbose, - "Stream Final Timestep is %d, last timestep was %d\n", + CP_verbose(Stream, TraceVerbose, "Stream Final Timestep is %d, last timestep was %d\n", Stream->FinalTimestep, LastTimestep); if (Stream->Status == NotOpen) { @@ -1532,18 +1428,15 @@ static TSMetadataList waitForNextMetadata(SstStream Stream, long LastTimestep) else { CP_verbose(Stream, PerStepVerbose, - "Wait for next metadata returning NULL, status %d ", - Stream->Status); + "Wait for next metadata returning NULL, status %d ", Stream->Status); } /* closed or failed, return NULL */ Stream->CurrentWorkingTimestep = -1; return NULL; } - CP_verbose(Stream, PerRankVerbose, - "Waiting for metadata for a Timestep later than TS %d\n", + CP_verbose(Stream, PerRankVerbose, "Waiting for metadata for a Timestep later than TS %d\n", LastTimestep); - CP_verbose(Stream, TraceVerbose, - "(PID %lx, TID %lx) Stream status is %s\n", (long)getpid(), + CP_verbose(Stream, TraceVerbose, "(PID %lx, TID %lx) Stream status is %s\n", (long)getpid(), (long)gettid(), SSTStreamStatusStr[Stream->Status]); /* wait until we get the timestep metadata or something else changes */ STREAM_CONDITION_WAIT(Stream); @@ -1555,10 +1448,7 @@ static TSMetadataList waitForNextMetadata(SstStream Stream, long LastTimestep) // program thread. Only accesses the CurrentMetadata field which is // touched only by other subroutines called by the main program // thread, it needs no locking. -extern SstFullMetadata SstGetCurMetadata(SstStream Stream) -{ - return Stream->CurrentMetadata; -} +extern SstFullMetadata SstGetCurMetadata(SstStream Stream) { return Stream->CurrentMetadata; } extern SstMetaMetaList SstGetNewMetaMetaData(SstStream Stream, long Timestep) { @@ -1607,8 +1497,7 @@ extern SstBlock SstGetAttributeData(SstStream Stream, long Timestep) return InternalAttrDataInfo; } -static void AddToReadStats(SstStream Stream, int Rank, long Timestep, - size_t Length) +static void AddToReadStats(SstStream Stream, int Rank, long Timestep, size_t Length) { if (!Stream->RanksRead) Stream->RanksRead = calloc(1, Stream->WriterCohortSize); @@ -1639,29 +1528,25 @@ static void ReleaseTSReadStats(SstStream Stream, long Timestep) else { Stream->Stats.RunningFanIn = - Stream->Stats.RunningFanIn + - ((double)ThisFanIn - Stream->Stats.RunningFanIn) / - min(Stream->Stats.TimestepsConsumed, 100); + Stream->Stats.RunningFanIn + ((double)ThisFanIn - Stream->Stats.RunningFanIn) / + min(Stream->Stats.TimestepsConsumed, 100); } } // SstReadRemotememory is only called by the main // program thread. -extern void *SstReadRemoteMemory(SstStream Stream, int Rank, long Timestep, - size_t Offset, size_t Length, void *Buffer, - void *DP_TimestepInfo) +extern void *SstReadRemoteMemory(SstStream Stream, int Rank, long Timestep, size_t Offset, + size_t Length, void *Buffer, void *DP_TimestepInfo) { if (Stream->ConfigParams->ReaderShortCircuitReads) return NULL; Stream->Stats.BytesTransferred += Length; AddToReadStats(Stream, Rank, Timestep, Length); - return Stream->DP_Interface->readRemoteMemory( - &Svcs, Stream->DP_Stream, Rank, Timestep, Offset, Length, Buffer, - DP_TimestepInfo); + return Stream->DP_Interface->readRemoteMemory(&Svcs, Stream->DP_Stream, Rank, Timestep, Offset, + Length, Buffer, DP_TimestepInfo); } -static void sendOneToEachWriterRank(SstStream Stream, CMFormat f, void *Msg, - void **WS_StreamPtr) +static void sendOneToEachWriterRank(SstStream Stream, CMFormat f, void *Msg, void **WS_StreamPtr) { if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) { @@ -1681,8 +1566,7 @@ static void sendOneToEachWriterRank(SstStream Stream, CMFormat f, void *Msg, case Opening: case Established: CP_verbose(Stream, CriticalVerbose, - "Message failed to send to writer %d (%p)\n", - peer, *WS_StreamPtr); + "Message failed to send to writer %d (%p)\n", peer, *WS_StreamPtr); break; case PeerClosed: case PeerFailed: @@ -1712,8 +1596,7 @@ static void sendOneToEachWriterRank(SstStream Stream, CMFormat f, void *Msg, case Opening: case Established: CP_verbose(Stream, CriticalVerbose, - "Message failed to send to writer %d (%p)\n", - peer, *WS_StreamPtr); + "Message failed to send to writer %d (%p)\n", peer, *WS_StreamPtr); break; case PeerClosed: case PeerFailed: @@ -1736,9 +1619,8 @@ extern void SstReaderDefinitionLock(SstStream Stream, long EffectiveTimestep) memset(&Msg, 0, sizeof(Msg)); Msg.Timestep = EffectiveTimestep; - sendOneToEachWriterRank( - Stream, Stream->CPInfo->SharedCM->LockReaderDefinitionsFormat, &Msg, - &Msg.WSR_Stream); + sendOneToEachWriterRank(Stream, Stream->CPInfo->SharedCM->LockReaderDefinitionsFormat, &Msg, + &Msg.WSR_Stream); } // SstReleaseStep is only called by the main program thread. It @@ -1753,14 +1635,12 @@ extern void SstReleaseStep(SstStream Stream) STREAM_MUTEX_LOCK(Stream); if (Stream->DP_Interface->RSReleaseTimestep) { - (Stream->DP_Interface->RSReleaseTimestep)(&Svcs, Stream->DP_Stream, - Timestep); + (Stream->DP_Interface->RSReleaseTimestep)(&Svcs, Stream->DP_Stream, Timestep); } ReleaseTSReadStats(Stream, Timestep); STREAM_MUTEX_UNLOCK(Stream); - if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) || - (Stream->Rank == 0)) + if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) || (Stream->Rank == 0)) { STREAM_MUTEX_LOCK(Stream); FreeTimestep(Stream, Timestep); @@ -1776,13 +1656,10 @@ extern void SstReleaseStep(SstStream Stream) * send each writer rank a release for this timestep (actually goes to WSR * Streams) */ - CP_verbose( - Stream, PerRankVerbose, - "Sending ReleaseTimestep message for timestep %d, one to each writer\n", - Timestep); - sendOneToEachWriterRank(Stream, - Stream->CPInfo->SharedCM->ReleaseTimestepFormat, - &Msg, &Msg.WSR_Stream); + CP_verbose(Stream, PerRankVerbose, + "Sending ReleaseTimestep message for timestep %d, one to each writer\n", Timestep); + sendOneToEachWriterRank(Stream, Stream->CPInfo->SharedCM->ReleaseTimestepFormat, &Msg, + &Msg.WSR_Stream); if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) { @@ -1791,16 +1668,13 @@ extern void SstReleaseStep(SstStream Stream) PERFSTUBS_TIMER_STOP_FUNC(timer); } -static void NotifyDPArrivedMetadata(SstStream Stream, - struct _TimestepMetadataMsg *MetadataMsg) +static void NotifyDPArrivedMetadata(SstStream Stream, struct _TimestepMetadataMsg *MetadataMsg) { - if ((MetadataMsg->Metadata != NULL) && - (MetadataMsg->Timestep > Stream->LastDPNotifiedTimestep)) + if ((MetadataMsg->Metadata != NULL) && (MetadataMsg->Timestep > Stream->LastDPNotifiedTimestep)) { if (Stream->DP_Interface->timestepArrived) { - Stream->DP_Interface->timestepArrived(&Svcs, Stream->DP_Stream, - MetadataMsg->Timestep, + Stream->DP_Interface->timestepArrived(&Svcs, Stream->DP_Stream, MetadataMsg->Timestep, MetadataMsg->PreloadMode); } Stream->LastDPNotifiedTimestep = MetadataMsg->Timestep; @@ -1842,8 +1716,8 @@ static SstStatusValue SstAdvanceStepPeer(SstStream Stream, SstStepMode mode, my_info.LatestTimestep = MaxQueuedMetadata(Stream); my_info.timeout_sec = timeout_sec; my_info.mode = mode; - SMPI_Gather(&my_info, sizeof(my_info), SMPI_CHAR, global_info, - sizeof(my_info), SMPI_CHAR, 0, Stream->mpiComm); + SMPI_Gather(&my_info, sizeof(my_info), SMPI_CHAR, global_info, sizeof(my_info), SMPI_CHAR, + 0, Stream->mpiComm); if (Stream->Rank == 0) { long Biggest = -1; @@ -1890,8 +1764,7 @@ static SstStatusValue SstAdvanceStepPeer(SstStream Stream, SstStepMode mode, { waitForMetadataWithTimeout(Stream, FLT_MAX); } - NextTimestep = - MaxQueuedMetadata(Stream); /* might be -1 if we timed out */ + NextTimestep = MaxQueuedMetadata(Stream); /* might be -1 if we timed out */ } else { @@ -1957,15 +1830,13 @@ static SstStatusValue SstAdvanceStepPeer(SstStream Stream, SstStepMode mode, "SstAdvanceStep returning EndOfStream at timestep %d\n", Stream->ReaderTimestep); STREAM_MUTEX_UNLOCK(Stream); - Stream->DP_Interface->notifyConnFailure(&Svcs, Stream->DP_Stream, - 0); + Stream->DP_Interface->notifyConnFailure(&Svcs, Stream->DP_Stream, 0); STREAM_MUTEX_LOCK(Stream); return SstFatalError; } if (NextTimestep == -1) { - CP_verbose(Stream, PerStepVerbose, - "AdvancestepPeer timing out on no data\n"); + CP_verbose(Stream, PerStepVerbose, "AdvancestepPeer timing out on no data\n"); return SstTimeout; } if (mode == SstLatestAvailable) @@ -1977,8 +1848,7 @@ static SstStatusValue SstAdvanceStepPeer(SstStream Stream, SstStepMode mode, * timestep after this point. It has to be released upon * arrival */ CP_verbose(Stream, PerStepVerbose, - "timed or Latest timestep, determined NextTimestep %d\n", - NextTimestep); + "timed or Latest timestep, determined NextTimestep %d\n", NextTimestep); Stream->DiscardPriorTimestep = NextTimestep; releasePriorTimesteps(Stream, NextTimestep); } @@ -2007,8 +1877,7 @@ static SstStatusValue SstAdvanceStepPeer(SstStream Stream, SstStepMode mode, SstFullMetadata Mdata = malloc(sizeof(struct _SstFullMetadata)); memset(Mdata, 0, sizeof(struct _SstFullMetadata)); Mdata->WriterCohortSize = Entry->MetadataMsg->CohortSize; - Mdata->WriterMetadata = - malloc(sizeof(Mdata->WriterMetadata[0]) * Mdata->WriterCohortSize); + Mdata->WriterMetadata = malloc(sizeof(Mdata->WriterMetadata[0]) * Mdata->WriterCohortSize); for (int i = 0; i < Mdata->WriterCohortSize; i++) { Mdata->WriterMetadata[i] = &Entry->MetadataMsg->Metadata[i]; @@ -2025,8 +1894,7 @@ static SstStatusValue SstAdvanceStepPeer(SstStream Stream, SstStepMode mode, Stream->CurrentWorkingTimestep = Entry->MetadataMsg->Timestep; Stream->CurrentMetadata = Mdata; - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning Success on timestep %d\n", + CP_verbose(Stream, PerStepVerbose, "SstAdvanceStep returning Success on timestep %d\n", Entry->MetadataMsg->Timestep); return SstSuccess; } @@ -2039,15 +1907,13 @@ static SstStatusValue SstAdvanceStepPeer(SstStream Stream, SstStepMode mode, } else { - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning FatalError at timestep %d\n", + CP_verbose(Stream, PerStepVerbose, "SstAdvanceStep returning FatalError at timestep %d\n", Stream->ReaderTimestep); return SstFatalError; } } -static SstStatusValue SstAdvanceStepMin(SstStream Stream, SstStepMode mode, - const float timeout_sec) +static SstStatusValue SstAdvanceStepMin(SstStream Stream, SstStepMode mode, const float timeout_sec) { TSMetadataDistributionMsg ReturnData; struct _TimestepMetadataMsg *MetadataMsg; @@ -2100,8 +1966,7 @@ static SstStatusValue SstAdvanceStepMin(SstStream Stream, SstStepMode mode, { waitForMetadataWithTimeout(Stream, FLT_MAX); } - NextTimestep = - MaxQueuedMetadata(Stream); /* might be -1 if we timed out */ + NextTimestep = MaxQueuedMetadata(Stream); /* might be -1 if we timed out */ } else { @@ -2135,16 +2000,14 @@ static SstStatusValue SstAdvanceStepMin(SstStream Stream, SstStepMode mode, } else if ((NextTimestep == -1) && (Stream->Status == PeerClosed)) { - CP_verbose( - Stream, PerStepVerbose, - "SstAdvanceStepMin returning EndOfStream at timestep %d\n", - Stream->ReaderTimestep); + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStepMin returning EndOfStream at timestep %d\n", + Stream->ReaderTimestep); return_value = SstEndOfStream; } else if (NextTimestep == -1) { - CP_verbose(Stream, PerStepVerbose, - "AdvancestepMin timing out on no data\n"); + CP_verbose(Stream, PerStepVerbose, "AdvancestepMin timing out on no data\n"); return_value = SstTimeout; } else if (mode == SstLatestAvailable) @@ -2155,10 +2018,8 @@ static SstStatusValue SstAdvanceStepMin(SstStream Stream, SstStepMode mode, /* Side note: It is possible that someone could get a "prior" * timestep after this point. It has to be released upon * arrival */ - CP_verbose( - Stream, PerStepVerbose, - "timed or Latest timestep, determined NextTimestep %d\n", - NextTimestep); + CP_verbose(Stream, PerStepVerbose, + "timed or Latest timestep, determined NextTimestep %d\n", NextTimestep); Stream->DiscardPriorTimestep = NextTimestep; releasePriorTimesteps(Stream, NextTimestep); } @@ -2179,8 +2040,7 @@ static SstStatusValue SstAdvanceStepMin(SstStream Stream, SstStepMode mode, { msg.TSmsg = RootEntry->MetadataMsg; msg.ReturnValue = return_value; - CP_verbose(Stream, TraceVerbose, - "Setting TSmsg to Rootentry value\n"); + CP_verbose(Stream, TraceVerbose, "Setting TSmsg to Rootentry value\n"); } else { @@ -2212,28 +2072,24 @@ static SstStatusValue SstAdvanceStepMin(SstStream Stream, SstStepMode mode, } // AddArrivedMetadataInfo(Stream, &msg); ReturnData = CP_distributeDataFromRankZero( - Stream, &msg, Stream->CPInfo->TimestepDistributionFormat, - &free_block); + Stream, &msg, Stream->CPInfo->TimestepDistributionFormat, &free_block); } else { STREAM_MUTEX_UNLOCK(Stream); ReturnData = CP_distributeDataFromRankZero( - Stream, NULL, Stream->CPInfo->CombinedWriterInfoFormat, - &free_block); + Stream, NULL, Stream->CPInfo->CombinedWriterInfoFormat, &free_block); STREAM_MUTEX_LOCK(Stream); } ret = (SstStatusValue)ReturnData->ReturnValue; if (ReturnData->ReturnValue != SstSuccess) { - if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) && - (ReturnData->TSmsg)) + if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) && (ReturnData->TSmsg)) { - CP_verbose( - Stream, PerRankVerbose, - "SstAdvanceStep installing precious metadata before exiting\n"); + CP_verbose(Stream, PerRankVerbose, + "SstAdvanceStep installing precious metadata before exiting\n"); FFSMarshalInstallPreciousMetadata(Stream, ReturnData->TSmsg); } else if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) && @@ -2244,22 +2100,20 @@ static SstStatusValue SstAdvanceStepMin(SstStream Stream, SstStepMode mode, } free(free_block); - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning FAILURE\n"); + CP_verbose(Stream, PerStepVerbose, "SstAdvanceStep returning FAILURE\n"); return ret; } MetadataMsg = ReturnData->TSmsg; if (ReturnData->CommPatternLockedTimestep != -1) { - Stream->CommPatternLockedTimestep = - ReturnData->CommPatternLockedTimestep; + Stream->CommPatternLockedTimestep = ReturnData->CommPatternLockedTimestep; Stream->CommPatternLocked = 2; STREAM_MUTEX_UNLOCK(Stream); if (Stream->DP_Interface->RSreadPatternLocked) { - Stream->DP_Interface->RSreadPatternLocked( - &Svcs, Stream->DP_Stream, Stream->CommPatternLockedTimestep); + Stream->DP_Interface->RSreadPatternLocked(&Svcs, Stream->DP_Stream, + Stream->CommPatternLockedTimestep); } STREAM_MUTEX_LOCK(Stream); } @@ -2270,8 +2124,7 @@ static SstStatusValue SstAdvanceStepMin(SstStream Stream, SstStepMode mode, Stream->ReaderTimestep = MetadataMsg->Timestep; if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) { - CP_verbose(Stream, TraceVerbose, - "Calling install metadata from metadata block %p\n", + CP_verbose(Stream, TraceVerbose, "Calling install metadata from metadata block %p\n", MetadataMsg); FFSMarshalInstallMetadata(Stream, MetadataMsg); } @@ -2283,8 +2136,7 @@ static SstStatusValue SstAdvanceStepMin(SstStream Stream, SstStepMode mode, SstFullMetadata Mdata = malloc(sizeof(struct _SstFullMetadata)); memset(Mdata, 0, sizeof(struct _SstFullMetadata)); Mdata->WriterCohortSize = MetadataMsg->CohortSize; - Mdata->WriterMetadata = - malloc(sizeof(Mdata->WriterMetadata[0]) * Mdata->WriterCohortSize); + Mdata->WriterMetadata = malloc(sizeof(Mdata->WriterMetadata[0]) * Mdata->WriterCohortSize); for (int i = 0; i < Mdata->WriterCohortSize; i++) { Mdata->WriterMetadata[i] = &MetadataMsg->Metadata[i]; @@ -2302,8 +2154,7 @@ static SstStatusValue SstAdvanceStepMin(SstStream Stream, SstStepMode mode, Mdata->FreeBlock = free_block; Stream->CurrentMetadata = Mdata; - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning Success on timestep %d\n", + CP_verbose(Stream, PerStepVerbose, "SstAdvanceStep returning Success on timestep %d\n", MetadataMsg->Timestep); return SstSuccess; } @@ -2334,12 +2185,10 @@ extern SstStatusValue SstAdvanceStep(SstStream Stream, const float timeout_sec) if (Stream->WriterConfigParams->StepDistributionMode == StepsOnDemand) { struct _ReaderRequestStepMsg Msg; - CP_verbose(Stream, PerRankVerbose, - "Sending Reader Request Step messages to writer\n"); + CP_verbose(Stream, PerRankVerbose, "Sending Reader Request Step messages to writer\n"); memset(&Msg, 0, sizeof(Msg)); - sendOneToEachWriterRank( - Stream, Stream->CPInfo->SharedCM->ReaderRequestStepFormat, &Msg, - &Msg.WSR_Stream); + sendOneToEachWriterRank(Stream, Stream->CPInfo->SharedCM->ReaderRequestStepFormat, &Msg, + &Msg.WSR_Stream); } SstStepMode mode = SstNextAvailable; @@ -2377,10 +2226,9 @@ extern void SstReaderClose(SstStream Stream) gettimeofday(&CloseTime, NULL); timersub(&CloseTime, &Stream->ValidStartTime, &Diff); memset(&Msg, 0, sizeof(Msg)); - sendOneToEachWriterRank(Stream, Stream->CPInfo->SharedCM->ReaderCloseFormat, - &Msg, &Msg.WSR_Stream); - Stream->Stats.StreamValidTimeSecs = - (double)Diff.tv_usec / 1e6 + Diff.tv_sec; + sendOneToEachWriterRank(Stream, Stream->CPInfo->SharedCM->ReaderCloseFormat, &Msg, + &Msg.WSR_Stream); + Stream->Stats.StreamValidTimeSecs = (double)Diff.tv_usec / 1e6 + Diff.tv_sec; if (Stream->CPVerbosityLevel >= (int)SummaryVerbose) { diff --git a/source/adios2/toolkit/sst/cp/cp_writer.c b/source/adios2/toolkit/sst/cp/cp_writer.c index f81dc69132..21ffb76fac 100644 --- a/source/adios2/toolkit/sst/cp/cp_writer.c +++ b/source/adios2/toolkit/sst/cp/cp_writer.c @@ -19,74 +19,67 @@ #include "cp_internal.h" #include -static void CP_PeerFailCloseWSReader(WS_ReaderInfo CP_WSR_Stream, - enum StreamStatus NewState); +static void CP_PeerFailCloseWSReader(WS_ReaderInfo CP_WSR_Stream, enum StreamStatus NewState); static void ProcessReleaseList(SstStream Stream, ReturnMetadataInfo Metadata); #define gettid() pthread_self() #ifdef MUTEX_DEBUG -#define STREAM_MUTEX_LOCK(Stream) \ - fprintf(stderr, "(PID %lx, TID %lx) CP_WRITER Trying lock line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - pthread_mutex_lock(&Stream->DataLock); \ - Stream->Locked++; \ - fprintf(stderr, "(PID %lx, TID %lx) CP_WRITER Got lock\n", (long)getpid(), \ - (long)gettid()); - -#define STREAM_MUTEX_UNLOCK(Stream) \ - fprintf(stderr, "(PID %lx, TID %lx) CP_WRITER UNlocking line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - Stream->Locked--; \ +#define STREAM_MUTEX_LOCK(Stream) \ + fprintf(stderr, "(PID %lx, TID %lx) CP_WRITER Trying lock line %d\n", (long)getpid(), \ + (long)gettid(), __LINE__); \ + pthread_mutex_lock(&Stream->DataLock); \ + Stream->Locked++; \ + fprintf(stderr, "(PID %lx, TID %lx) CP_WRITER Got lock\n", (long)getpid(), (long)gettid()); + +#define STREAM_MUTEX_UNLOCK(Stream) \ + fprintf(stderr, "(PID %lx, TID %lx) CP_WRITER UNlocking line %d\n", (long)getpid(), \ + (long)gettid(), __LINE__); \ + Stream->Locked--; \ pthread_mutex_unlock(&Stream->DataLock); -#define STREAM_CONDITION_WAIT(Stream) \ - { \ - fprintf( \ - stderr, \ - "(PID %lx, TID %lx) CP_WRITER Dropping Condition Lock line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - Stream->Locked = 0; \ - pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ - fprintf( \ - stderr, \ - "(PID %lx, TID %lx) CP_WRITER Acquired Condition Lock line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - Stream->Locked = 1; \ - } -#define STREAM_CONDITION_SIGNAL(Stream) \ - { \ - assert(Stream->Locked == 1); \ - fprintf(stderr, \ - "(PID %lx, TID %lx) CP_WRITER Signalling Condition line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - pthread_cond_signal(&Stream->DataCondition); \ - } - -#define STREAM_ASSERT_LOCKED(Stream) \ - { \ - assert(Stream->Locked == 1); \ - } -#define STREAM_ASSERT_UNLOCKED(Stream) \ - { \ - STREAM_MUTEX_LOCK(Stream); \ - STREAM_MUTEX_UNLOCK(Stream); \ +#define STREAM_CONDITION_WAIT(Stream) \ + { \ + fprintf(stderr, "(PID %lx, TID %lx) CP_WRITER Dropping Condition Lock line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + Stream->Locked = 0; \ + pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ + fprintf(stderr, "(PID %lx, TID %lx) CP_WRITER Acquired Condition Lock line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + Stream->Locked = 1; \ + } +#define STREAM_CONDITION_SIGNAL(Stream) \ + { \ + assert(Stream->Locked == 1); \ + fprintf(stderr, "(PID %lx, TID %lx) CP_WRITER Signalling Condition line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + pthread_cond_signal(&Stream->DataCondition); \ + } + +#define STREAM_ASSERT_LOCKED(Stream) \ + { \ + assert(Stream->Locked == 1); \ + } +#define STREAM_ASSERT_UNLOCKED(Stream) \ + { \ + STREAM_MUTEX_LOCK(Stream); \ + STREAM_MUTEX_UNLOCK(Stream); \ } #else -#define STREAM_MUTEX_LOCK(Stream) \ - { \ - pthread_mutex_lock(&Stream->DataLock); \ +#define STREAM_MUTEX_LOCK(Stream) \ + { \ + pthread_mutex_lock(&Stream->DataLock); \ } -#define STREAM_MUTEX_UNLOCK(Stream) \ - { \ - pthread_mutex_unlock(&Stream->DataLock); \ +#define STREAM_MUTEX_UNLOCK(Stream) \ + { \ + pthread_mutex_unlock(&Stream->DataLock); \ } -#define STREAM_CONDITION_WAIT(Stream) \ - { \ - pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ +#define STREAM_CONDITION_WAIT(Stream) \ + { \ + pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ } -#define STREAM_CONDITION_SIGNAL(Stream) \ - { \ - pthread_cond_signal(&Stream->DataCondition); \ +#define STREAM_CONDITION_SIGNAL(Stream) \ + { \ + pthread_cond_signal(&Stream->DataCondition); \ } #define STREAM_ASSERT_LOCKED(Stream) #define STREAM_ASSERT_UNLOCKED(Stream) @@ -165,8 +158,7 @@ static void RemoveNameFromExitList(const char *FileName) } } -static int writeContactInfoFile(const char *Name, SstStream Stream, - attr_list DPAttrs) +static int writeContactInfoFile(const char *Name, SstStream Stream, attr_list DPAttrs) { char *Contact = buildContactInfo(Stream, DPAttrs); char *TmpName = malloc(strlen(Name) + strlen(".tmp") + 1); @@ -178,8 +170,7 @@ static int writeContactInfoFile(const char *Name, SstStream Stream, * renaming it to the final version to help prevent partial reads */ snprintf(TmpName, strlen(Name) + strlen(".tmp") + 1, "%s.tmp", Name); - snprintf(FileName, strlen(Name) + strlen(SST_POSTFIX) + 1, "%s" SST_POSTFIX, - Name); + snprintf(FileName, strlen(Name) + strlen(SST_POSTFIX) + 1, "%s" SST_POSTFIX, Name); WriterInfo = fopen(TmpName, "w"); if (!WriterInfo) { @@ -201,8 +192,7 @@ static int writeContactInfoFile(const char *Name, SstStream Stream, return 1; } -static void writeContactInfoScreen(const char *Name, SstStream Stream, - attr_list DPAttrs) +static void writeContactInfoScreen(const char *Name, SstStream Stream, attr_list DPAttrs) { char *Contact = buildContactInfo(Stream, DPAttrs); @@ -218,8 +208,7 @@ static void writeContactInfoScreen(const char *Name, SstStream Stream, free(Contact); } -static int registerContactInfo(const char *Name, SstStream Stream, - attr_list DPAttrs) +static int registerContactInfo(const char *Name, SstStream Stream, attr_list DPAttrs) { switch (Stream->RegistrationMethod) { @@ -275,15 +264,13 @@ static void RemoveQueueEntries(SstStream Stream) { CPTimestepList Next = List->Next; int Freed = 0; - if (List->Expired && (!List->PreciousTimestep) && - (List->ReferenceCount == 0)) + if (List->Expired && (!List->PreciousTimestep) && (List->ReferenceCount == 0)) { CPTimestepList ItemToFree = List; Freed = 1; if (ItemToFree->DPRegistered) { - Stream->DP_Interface->releaseTimestep(&Svcs, Stream->DP_Stream, - List->Timestep); + Stream->DP_Interface->releaseTimestep(&Svcs, Stream->DP_Stream, List->Timestep); } Stream->QueuedTimestepCount--; @@ -294,9 +281,8 @@ static void RemoveQueueEntries(SstStream Stream) CP_verbose(Stream, PerRankVerbose, "Remove queue Entries removing Timestep %ld (exp %d, " "Prec %d, Ref %d), Count now %d\n", - ItemToFree->Timestep, ItemToFree->Expired, - ItemToFree->PreciousTimestep, ItemToFree->ReferenceCount, - Stream->QueuedTimestepCount); + ItemToFree->Timestep, ItemToFree->Expired, ItemToFree->PreciousTimestep, + ItemToFree->ReferenceCount, Stream->QueuedTimestepCount); ItemToFree->FreeTimestep(ItemToFree->FreeClientData); free(ItemToFree->Msg); // free(ItemToFree->MetadataArray); @@ -350,16 +336,13 @@ static void QueueMaintenance(SstStream Stream) for (int i = 0; i < Stream->ReaderCount; i++) { CP_verbose(Stream, TraceVerbose, - "Reader %d status %s has last released %ld, last sent %ld\n", - i, SSTStreamStatusStr[Stream->Readers[i]->ReaderStatus], - Stream->Readers[i]->LastReleasedTimestep, - Stream->Readers[i]->LastSentTimestep); + "Reader %d status %s has last released %ld, last sent %ld\n", i, + SSTStreamStatusStr[Stream->Readers[i]->ReaderStatus], + Stream->Readers[i]->LastReleasedTimestep, Stream->Readers[i]->LastSentTimestep); if (Stream->Readers[i]->ReaderStatus == Established) { - if (Stream->Readers[i]->LastReleasedTimestep < - SmallestLastReleasedTimestep) - SmallestLastReleasedTimestep = - Stream->Readers[i]->LastReleasedTimestep; + if (Stream->Readers[i]->LastReleasedTimestep < SmallestLastReleasedTimestep) + SmallestLastReleasedTimestep = Stream->Readers[i]->LastReleasedTimestep; } else if (Stream->Readers[i]->ReaderStatus == Opening) { @@ -368,17 +351,15 @@ static void QueueMaintenance(SstStream Stream) } if (SmallestLastReleasedTimestep != LONG_MAX) { - CP_verbose( - Stream, TraceVerbose, - "QueueMaintenance, smallest last released = %ld, count = %d\n", - SmallestLastReleasedTimestep, Stream->QueuedTimestepCount); + CP_verbose(Stream, TraceVerbose, + "QueueMaintenance, smallest last released = %ld, count = %d\n", + SmallestLastReleasedTimestep, Stream->QueuedTimestepCount); } else { - CP_verbose( - Stream, TraceVerbose, - "QueueMaintenance, smallest last released = LONG_MAX, count = %d\n", - Stream->QueuedTimestepCount); + CP_verbose(Stream, TraceVerbose, + "QueueMaintenance, smallest last released = LONG_MAX, count = %d\n", + Stream->QueuedTimestepCount); } if (SomeReaderIsOpening) { @@ -410,8 +391,7 @@ static void QueueMaintenance(SstStream Stream) { if (List->Expired == 0) { - CP_verbose(Stream, PerRankVerbose, - "Writer tagging timestep %ld as expired\n", + CP_verbose(Stream, PerRankVerbose, "Writer tagging timestep %ld as expired\n", List->Timestep); } List->Expired = 1; @@ -419,8 +399,7 @@ static void QueueMaintenance(SstStream Stream) (!List->PreciousTimestep)) { /* unregister with DP */ - Stream->DP_Interface->releaseTimestep( - &Svcs, Stream->DP_Stream, List->Timestep); + Stream->DP_Interface->releaseTimestep(&Svcs, Stream->DP_Stream, List->Timestep); List->DPRegistered = 0; } } @@ -440,8 +419,7 @@ static void QueueMaintenance(SstStream Stream) QueueMaintenance UNLOCK */ -extern void WriterConnCloseHandler(CManager cm, CMConnection closed_conn, - void *client_data) +extern void WriterConnCloseHandler(CManager cm, CMConnection closed_conn, void *client_data) { PERFSTUBS_TIMER_START_FUNC(timer); WS_ReaderInfo WSreader = (WS_ReaderInfo)client_data; @@ -473,15 +451,13 @@ extern void WriterConnCloseHandler(CManager cm, CMConnection closed_conn, { /* ignore this. We expect a close after the connection is marked closed */ - CP_verbose( - ParentWriterStream, PerStepVerbose, - "Writer-side Rank received a " - "connection-close event in state opening, handling failure\n"); + CP_verbose(ParentWriterStream, PerStepVerbose, + "Writer-side Rank received a " + "connection-close event in state opening, handling failure\n"); /* main thread will be waiting for this */ STREAM_CONDITION_SIGNAL(ParentWriterStream); } - else if ((WSreader->ReaderStatus == PeerClosed) || - (WSreader->ReaderStatus == Closed)) + else if ((WSreader->ReaderStatus == PeerClosed) || (WSreader->ReaderStatus == Closed)) { /* ignore this. We expect a close after the connection is marked closed */ @@ -520,16 +496,14 @@ static void SendPeerSetupMsg(WS_ReaderInfo reader, int reversePeer, int myRank) STREAM_ASSERT_UNLOCKED(Stream); if (CMwrite(conn, Stream->CPInfo->SharedCM->PeerSetupFormat, &setup) != 1) { - CP_verbose( - Stream, CriticalVerbose, - "Message failed to send to reader peer rank %d in sendPeerSetup in " - "reader open\n", - reversePeer); + CP_verbose(Stream, CriticalVerbose, + "Message failed to send to reader peer rank %d in sendPeerSetup in " + "reader open\n", + reversePeer); } } -static int initWSReader(WS_ReaderInfo reader, int ReaderSize, - CP_ReaderInitInfo *reader_info) +static int initWSReader(WS_ReaderInfo reader, int ReaderSize, CP_ReaderInitInfo *reader_info) { SstStream Stream = reader->ParentStream; int WriterSize = reader->ParentStream->CohortSize; @@ -539,15 +513,13 @@ static int initWSReader(WS_ReaderInfo reader, int ReaderSize, reader->ReaderCohortSize = ReaderSize; if (!reader->Connections) { - reader->Connections = - calloc(sizeof(reader->Connections[0]), ReaderSize); + reader->Connections = calloc(sizeof(reader->Connections[0]), ReaderSize); } for (i = 0; i < ReaderSize; i++) { if (!reader->Connections[i].ContactList) { - reader->Connections[i].ContactList = - attr_list_from_string(reader_info[i]->ContactInfo); + reader->Connections[i].ContactList = attr_list_from_string(reader_info[i]->ContactInfo); } reader->Connections[i].RemoteStreamID = reader_info[i]->ReaderID; } @@ -593,16 +565,14 @@ static int initWSReader(WS_ReaderInfo reader, int ReaderSize, * failure awareness. */ - getPeerArrays(WriterSize, WriterRank, ReaderSize, &reader->Peers, - &reverseArray); + getPeerArrays(WriterSize, WriterRank, ReaderSize, &reader->Peers, &reverseArray); i = 0; while (reverseArray[i] != -1) { int peer = reverseArray[i]; if (reader->ParentStream->ConnectionUsleepMultiplier != 0) - usleep(WriterRank * - reader->ParentStream->ConnectionUsleepMultiplier); + usleep(WriterRank * reader->ParentStream->ConnectionUsleepMultiplier); if (!reader->Connections[peer].CMconn) { reader->Connections[peer].CMconn = @@ -615,31 +585,28 @@ static int initWSReader(WS_ReaderInfo reader, int ReaderSize, CP_error(reader->ParentStream, "Connection failed in " "SstInitWSReader! Contact list " "was:\n"); - CP_error( - reader->ParentStream, "%s\n", - attr_list_to_string(reader->Connections[peer].ContactList)); + CP_error(reader->ParentStream, "%s\n", + attr_list_to_string(reader->Connections[peer].ContactList)); /* fail the stream */ return 0; } - CP_verbose( - Stream, TraceVerbose, - "Registering a close handler for connection %p, to peer %d\n", - reader->Connections[peer].CMconn, peer); - CMconn_register_close_handler(reader->Connections[peer].CMconn, - WriterConnCloseHandler, + CP_verbose(Stream, TraceVerbose, + "Registering a close handler for connection %p, to peer %d\n", + reader->Connections[peer].CMconn, peer); + CMconn_register_close_handler(reader->Connections[peer].CMconn, WriterConnCloseHandler, (void *)reader); if (i == 0) { /* failure awareness for reader rank */ - CP_verbose(reader->ParentStream, TraceVerbose, - "Sending peer setup to rank %d\n", peer); + CP_verbose(reader->ParentStream, TraceVerbose, "Sending peer setup to rank %d\n", + peer); SendPeerSetupMsg(reader, peer, reader->ParentStream->Rank); } else { - CP_verbose(reader->ParentStream, TraceVerbose, - "Sending peer setup to rank %d\n", peer); + CP_verbose(reader->ParentStream, TraceVerbose, "Sending peer setup to rank %d\n", + peer); /* failure awareness for reader rank */ SendPeerSetupMsg(reader, peer, -1); } @@ -657,30 +624,25 @@ static int initWSReader(WS_ReaderInfo reader, int ReaderSize, continue; } if (reader->ParentStream->ConnectionUsleepMultiplier != 0) - usleep(WriterRank * - reader->ParentStream->ConnectionUsleepMultiplier); - reader->Connections[peer].CMconn = - CMget_conn(reader->ParentStream->CPInfo->SharedCM->cm, - reader->Connections[peer].ContactList); + usleep(WriterRank * reader->ParentStream->ConnectionUsleepMultiplier); + reader->Connections[peer].CMconn = CMget_conn( + reader->ParentStream->CPInfo->SharedCM->cm, reader->Connections[peer].ContactList); if (!reader->Connections[peer].CMconn) { CP_error(reader->ParentStream, "Connection failed in " "SstInitWSReader! Contact list " "was:\n"); - CP_error( - reader->ParentStream, "%s\n", - attr_list_to_string(reader->Connections[peer].ContactList)); + CP_error(reader->ParentStream, "%s\n", + attr_list_to_string(reader->Connections[peer].ContactList)); /* fail the stream */ return 0; } - CMconn_register_close_handler(reader->Connections[peer].CMconn, - WriterConnCloseHandler, + CMconn_register_close_handler(reader->Connections[peer].CMconn, WriterConnCloseHandler, (void *)reader); /* failure awareness for reader rank */ - CP_verbose(reader->ParentStream, TraceVerbose, - "Sending peer setup to rank %d\n", peer); + CP_verbose(reader->ParentStream, TraceVerbose, "Sending peer setup to rank %d\n", peer); SendPeerSetupMsg(reader, peer, reader->ParentStream->Rank); i++; } @@ -693,24 +655,21 @@ static int initWSReader(WS_ReaderInfo reader, int ReaderSize, { if (!reader->Connections[0].CMconn) { - reader->Connections[0].CMconn = - CMget_conn(reader->ParentStream->CPInfo->SharedCM->cm, - reader->Connections[0].ContactList); + reader->Connections[0].CMconn = CMget_conn( + reader->ParentStream->CPInfo->SharedCM->cm, reader->Connections[0].ContactList); } if (!reader->Connections[0].CMconn) { CP_error(reader->ParentStream, "Connection failed in " "SstInitWSReader! Contact list " "was:\n"); - CP_error( - reader->ParentStream, "%s\n", - attr_list_to_string(reader->Connections[0].ContactList)); + CP_error(reader->ParentStream, "%s\n", + attr_list_to_string(reader->Connections[0].ContactList)); /* fail the stream */ return 0; } - CMconn_register_close_handler(reader->Connections[0].CMconn, - WriterConnCloseHandler, + CMconn_register_close_handler(reader->Connections[0].CMconn, WriterConnCloseHandler, (void *)reader); } } @@ -718,8 +677,7 @@ static int initWSReader(WS_ReaderInfo reader, int ReaderSize, return 1; } -static long earliestAvailableTimestepNumber(SstStream Stream, - long CurrentTimestep) +static long earliestAvailableTimestepNumber(SstStream Stream, long CurrentTimestep) { long Ret = CurrentTimestep; CPTimestepList List = Stream->QueuedTimesteps; @@ -729,8 +687,7 @@ static long earliestAvailableTimestepNumber(SstStream Stream, CP_verbose(Stream, TraceVerbose, "Earliest available : Writer-side Timestep %ld " "now has reference count %d, expired %d, precious %d\n", - List->Timestep, List->ReferenceCount, List->Expired, - List->PreciousTimestep); + List->Timestep, List->ReferenceCount, List->Expired, List->PreciousTimestep); if (List->Timestep < Ret) { Ret = List->Timestep; @@ -751,8 +708,8 @@ static void UntagPreciousTimesteps(SstStream Stream) if (List->PreciousTimestep) { CP_verbose(Stream, TraceVerbose, - "Precious Timestep %d untagged, reference count is %d\n", - List->Timestep, List->ReferenceCount); + "Precious Timestep %d untagged, reference count is %d\n", List->Timestep, + List->ReferenceCount); List->PreciousTimestep = 0; List->Expired = 1; } @@ -773,8 +730,7 @@ static void SubRefTimestep(SstStream Stream, long Timestep, int SetLast) CP_verbose(Stream, TraceVerbose, "SubRef : Writer-side Timestep %ld " "now has reference count %d, expired %d, precious %d\n", - List->Timestep, List->ReferenceCount, List->Expired, - List->PreciousTimestep); + List->Timestep, List->ReferenceCount, List->Expired, List->PreciousTimestep); } List = List->Next; } @@ -790,8 +746,7 @@ WS_ReaderInfo WriterParticipateInReaderOpen(SstStream Stream) long MyStartingTimestep, GlobalStartingTimestep; WS_ReaderInfo CP_WSR_Stream = malloc(sizeof(*CP_WSR_Stream)); - CP_verbose(Stream, PerRankVerbose, - "Beginning writer-side reader open protocol\n"); + CP_verbose(Stream, PerRankVerbose, "Beginning writer-side reader open protocol\n"); if (Stream->Rank == 0) { STREAM_MUTEX_LOCK(Stream); @@ -808,8 +763,7 @@ WS_ReaderInfo WriterParticipateInReaderOpen(SstStream Stream) reader_data.RankZeroID = CP_WSR_Stream; reader_data.SpecPreload = Req->Msg->SpecPreload; ReturnData = CP_distributeDataFromRankZero( - Stream, &reader_data, Stream->CPInfo->CombinedReaderInfoFormat, - &free_block); + Stream, &reader_data, Stream->CPInfo->CombinedReaderInfoFormat, &free_block); WriterResponseCondition = Req->Msg->WriterResponseCondition; conn = Req->Conn; CMreturn_buffer(Stream->CPInfo->SharedCM->cm, Req->Msg); @@ -818,8 +772,7 @@ WS_ReaderInfo WriterParticipateInReaderOpen(SstStream Stream) else { ReturnData = CP_distributeDataFromRankZero( - Stream, NULL, Stream->CPInfo->CombinedReaderInfoFormat, - &free_block); + Stream, NULL, Stream->CPInfo->CombinedReaderInfoFormat, &free_block); } // printf("I am writer rank %d, my info on readers is:\n", Stream->Rank); // FMdump_data(FMFormat_of_original(Stream->CPInfo->combined_reader_Format), @@ -830,23 +783,19 @@ WS_ReaderInfo WriterParticipateInReaderOpen(SstStream Stream) void *DP_WriterInfo; void *ret_data_block; CP_PeerConnection *connections_to_reader; - connections_to_reader = - calloc(sizeof(CP_PeerConnection), ReturnData->ReaderCohortSize); + connections_to_reader = calloc(sizeof(CP_PeerConnection), ReturnData->ReaderCohortSize); for (int i = 0; i < ReturnData->ReaderCohortSize; i++) { - attr_list attrs = - attr_list_from_string(ReturnData->CP_ReaderInfo[i]->ContactInfo); + attr_list attrs = attr_list_from_string(ReturnData->CP_ReaderInfo[i]->ContactInfo); connections_to_reader[i].ContactList = attrs; - connections_to_reader[i].RemoteStreamID = - ReturnData->CP_ReaderInfo[i]->ReaderID; + connections_to_reader[i].RemoteStreamID = ReturnData->CP_ReaderInfo[i]->ReaderID; if ((i == 0) && (conn != NULL)) { // reuse existing connection to reader rank 0 // (only not NULL if this is writer rank 0) CMConnection_add_reference(conn); connections_to_reader[i].CMconn = conn; - CMconn_register_close_handler(conn, WriterConnCloseHandler, - (void *)CP_WSR_Stream); + CMconn_register_close_handler(conn, WriterConnCloseHandler, (void *)CP_WSR_Stream); } else { @@ -855,8 +804,8 @@ WS_ReaderInfo WriterParticipateInReaderOpen(SstStream Stream) } per_reader_Stream = Stream->DP_Interface->initWriterPerReader( - &Svcs, Stream->DP_Stream, ReturnData->ReaderCohortSize, - connections_to_reader, ReturnData->DP_ReaderInfo, &DP_WriterInfo); + &Svcs, Stream->DP_Stream, ReturnData->ReaderCohortSize, connections_to_reader, + ReturnData->DP_ReaderInfo, &DP_WriterInfo); memset(CP_WSR_Stream, 0, sizeof(*CP_WSR_Stream)); CP_WSR_Stream->ReaderStatus = NotOpen; @@ -875,16 +824,14 @@ WS_ReaderInfo WriterParticipateInReaderOpen(SstStream Stream) CP_WSR_Stream->PreloadMode = SstPreloadSpeculative; CP_WSR_Stream->PreloadModeActiveTimestep = 0; - CP_verbose(Stream, PerStepVerbose, - "Setting SpeculativePreload ON for new reader\n"); + CP_verbose(Stream, PerStepVerbose, "Setting SpeculativePreload ON for new reader\n"); } - int MySuccess = initWSReader(CP_WSR_Stream, ReturnData->ReaderCohortSize, - ReturnData->CP_ReaderInfo); + int MySuccess = + initWSReader(CP_WSR_Stream, ReturnData->ReaderCohortSize, ReturnData->CP_ReaderInfo); int GlobalSuccess = 0; - SMPI_Allreduce(&MySuccess, &GlobalSuccess, 1, SMPI_INT, SMPI_LAND, - Stream->mpiComm); + SMPI_Allreduce(&MySuccess, &GlobalSuccess, 1, SMPI_INT, SMPI_LAND, Stream->mpiComm); if (!GlobalSuccess) { @@ -895,8 +842,8 @@ WS_ReaderInfo WriterParticipateInReaderOpen(SstStream Stream) ReturnData = NULL; /* now invalid */ STREAM_MUTEX_LOCK(Stream); - Stream->Readers = realloc(Stream->Readers, sizeof(Stream->Readers[0]) * - (Stream->ReaderCount + 1)); + Stream->Readers = + realloc(Stream->Readers, sizeof(Stream->Readers[0]) * (Stream->ReaderCount + 1)); Stream->Readers[Stream->ReaderCount] = CP_WSR_Stream; Stream->ReaderCount++; STREAM_MUTEX_UNLOCK(Stream); @@ -913,23 +860,20 @@ WS_ReaderInfo WriterParticipateInReaderOpen(SstStream Stream) combined_init.CP_Info = (void **)&cpInfo; combined_init.DP_Info = DP_WriterInfo; - MyStartingTimestep = - earliestAvailableTimestepNumber(Stream, Stream->WriterTimestep); + MyStartingTimestep = earliestAvailableTimestepNumber(Stream, Stream->WriterTimestep); if (MyStartingTimestep == -1) MyStartingTimestep = 0; - SMPI_Allreduce(&MyStartingTimestep, &GlobalStartingTimestep, 1, SMPI_LONG, - SMPI_MAX, Stream->mpiComm); + SMPI_Allreduce(&MyStartingTimestep, &GlobalStartingTimestep, 1, SMPI_LONG, SMPI_MAX, + Stream->mpiComm); - CP_verbose(Stream, TraceVerbose, - "My oldest timestep was %ld, global oldest timestep was %ld\n", + CP_verbose(Stream, TraceVerbose, "My oldest timestep was %ld, global oldest timestep was %ld\n", MyStartingTimestep, GlobalStartingTimestep); CP_WSR_Stream->StartingTimestep = GlobalStartingTimestep; pointers = (struct _CP_DP_PairInfo **)CP_consolidateDataToRankZero( - Stream, &combined_init, Stream->CPInfo->PerRankWriterInfoFormat, - &ret_data_block); + Stream, &combined_init, Stream->CPInfo->PerRankWriterInfoFormat, &ret_data_block); if (Stream->Rank == 0) { @@ -939,24 +883,19 @@ WS_ReaderInfo WriterParticipateInReaderOpen(SstStream Stream) response.WriterCohortSize = Stream->CohortSize; response.WriterConfigParams = Stream->ConfigParams; response.NextStepNumber = GlobalStartingTimestep; - response.CP_WriterInfo = - malloc(response.WriterCohortSize * sizeof(void *)); - response.DP_WriterInfo = - malloc(response.WriterCohortSize * sizeof(void *)); + response.CP_WriterInfo = malloc(response.WriterCohortSize * sizeof(void *)); + response.DP_WriterInfo = malloc(response.WriterCohortSize * sizeof(void *)); for (int i = 0; i < response.WriterCohortSize; i++) { - response.CP_WriterInfo[i] = - (struct _CP_WriterInitInfo *)pointers[i]->CP_Info; + response.CP_WriterInfo[i] = (struct _CP_WriterInitInfo *)pointers[i]->CP_Info; response.DP_WriterInfo[i] = pointers[i]->DP_Info; } STREAM_ASSERT_UNLOCKED(Stream); - if (CMwrite(conn, Stream->CPInfo->SharedCM->WriterResponseFormat, - &response) != 1) + if (CMwrite(conn, Stream->CPInfo->SharedCM->WriterResponseFormat, &response) != 1) { - CP_verbose( - Stream, CriticalVerbose, - "Message failed to send to reader in participate in " - "reader open!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n"); + CP_verbose(Stream, CriticalVerbose, + "Message failed to send to reader in participate in " + "reader open!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!\n"); } free(response.CP_WriterInfo); free(response.DP_WriterInfo); @@ -973,8 +912,7 @@ WS_ReaderInfo WriterParticipateInReaderOpen(SstStream Stream) return CP_WSR_Stream; } -void sendOneToWSRCohort(WS_ReaderInfo CP_WSR_Stream, CMFormat f, void *Msg, - void **RS_StreamPtr) +void sendOneToWSRCohort(WS_ReaderInfo CP_WSR_Stream, CMFormat f, void *Msg, void **RS_StreamPtr) { SstStream Stream = CP_WSR_Stream->ParentStream; int j = 0; @@ -989,8 +927,7 @@ void sendOneToWSRCohort(WS_ReaderInfo CP_WSR_Stream, CMFormat f, void *Msg, /* add the reader-rank-specific Stream identifier to each outgoing * message */ *RS_StreamPtr = CP_WSR_Stream->Connections[peer].RemoteStreamID; - CP_verbose(Stream, TraceVerbose, - "Sending a message to reader %d (%p)\n", peer, + CP_verbose(Stream, TraceVerbose, "Sending a message to reader %d (%p)\n", peer, *RS_StreamPtr); if (conn) @@ -1001,8 +938,7 @@ void sendOneToWSRCohort(WS_ReaderInfo CP_WSR_Stream, CMFormat f, void *Msg, STREAM_MUTEX_LOCK(Stream); if (res != 1) { - CP_verbose(Stream, PerStepVerbose, - "Message failed to send to reader %d (%p)\n", + CP_verbose(Stream, PerStepVerbose, "Message failed to send to reader %d (%p)\n", peer, *RS_StreamPtr); CP_PeerFailCloseWSReader(CP_WSR_Stream, PeerFailed); } @@ -1020,8 +956,7 @@ void sendOneToWSRCohort(WS_ReaderInfo CP_WSR_Stream, CMFormat f, void *Msg, /* add the reader-rank-specific Stream identifier to each outgoing * message */ *RS_StreamPtr = CP_WSR_Stream->Connections[peer].RemoteStreamID; - CP_verbose(Stream, TraceVerbose, - "Sending a message to reader %d (%p)\n", peer, + CP_verbose(Stream, TraceVerbose, "Sending a message to reader %d (%p)\n", peer, *RS_StreamPtr); if (conn) @@ -1032,8 +967,7 @@ void sendOneToWSRCohort(WS_ReaderInfo CP_WSR_Stream, CMFormat f, void *Msg, STREAM_MUTEX_LOCK(Stream); if (res != 1) { - CP_verbose(Stream, PerStepVerbose, - "Message failed to send to reader %d (%p)\n", + CP_verbose(Stream, PerStepVerbose, "Message failed to send to reader %d (%p)\n", peer, *RS_StreamPtr); CP_PeerFailCloseWSReader(CP_WSR_Stream, PeerFailed); } @@ -1042,11 +976,9 @@ void sendOneToWSRCohort(WS_ReaderInfo CP_WSR_Stream, CMFormat f, void *Msg, } } -static void AddTSToSentList(SstStream Stream, WS_ReaderInfo Reader, - long Timestep) +static void AddTSToSentList(SstStream Stream, WS_ReaderInfo Reader, long Timestep) { - struct _SentTimestepRec *Item = malloc(sizeof(*Item)), - *List = Reader->SentTimestepList; + struct _SentTimestepRec *Item = malloc(sizeof(*Item)), *List = Reader->SentTimestepList; Item->Timestep = Timestep; Item->Next = NULL; if (List == NULL) @@ -1063,12 +995,10 @@ static void AddTSToSentList(SstStream Stream, WS_ReaderInfo Reader, } } -static void DerefSentTimestep(SstStream Stream, WS_ReaderInfo Reader, - long Timestep) +static void DerefSentTimestep(SstStream Stream, WS_ReaderInfo Reader, long Timestep) { struct _SentTimestepRec *List = Reader->SentTimestepList, *Last = NULL; - CP_verbose(Stream, PerRankVerbose, - "Reader sent timestep list %p, trying to release %ld\n", + CP_verbose(Stream, PerRankVerbose, "Reader sent timestep list %p, trying to release %ld\n", Reader->SentTimestepList, Timestep); while (List) @@ -1076,10 +1006,9 @@ static void DerefSentTimestep(SstStream Stream, WS_ReaderInfo Reader, int Freed = 0; struct _SentTimestepRec *Next = List->Next; - CP_verbose( - Stream, TraceVerbose, - "Reader considering sent timestep %ld,trying to release %ld\n", - List->Timestep, Timestep); + CP_verbose(Stream, TraceVerbose, + "Reader considering sent timestep %ld,trying to release %ld\n", List->Timestep, + Timestep); if (List->Timestep == Timestep) { struct _SentTimestepRec *ItemToFree = List; @@ -1098,8 +1027,8 @@ static void DerefSentTimestep(SstStream Stream, WS_ReaderInfo Reader, STREAM_MUTEX_UNLOCK(Stream); if (Stream->DP_Interface->readerReleaseTimestep) { - (Stream->DP_Interface->readerReleaseTimestep)( - &Svcs, Reader->DP_WSR_Stream, Timestep); + (Stream->DP_Interface->readerReleaseTimestep)(&Svcs, Reader->DP_WSR_Stream, + Timestep); } STREAM_MUTEX_LOCK(Stream); return; @@ -1117,13 +1046,11 @@ static void DerefAllSentTimesteps(SstStream Stream, WS_ReaderInfo Reader) CPTimestepList List = Stream->QueuedTimesteps; STREAM_ASSERT_LOCKED(Stream); - CP_verbose(Stream, PerRankVerbose, - "Dereferencing all timesteps sent to reader %p\n", Reader); + CP_verbose(Stream, PerRankVerbose, "Dereferencing all timesteps sent to reader %p\n", Reader); while (List) { CPTimestepList Next = List->Next; - CP_verbose(Stream, TraceVerbose, "Checking on timestep %d\n", - List->Timestep); + CP_verbose(Stream, TraceVerbose, "Checking on timestep %d\n", List->Timestep); DerefSentTimestep(Stream, Reader, List->Timestep); List = Next; } @@ -1133,24 +1060,20 @@ static void DerefAllSentTimesteps(SstStream Stream, WS_ReaderInfo Reader) static FFSFormatList ReturnNthListEntry(FFSFormatList List, size_t Count); static size_t FormatListCount(FFSFormatList List); -static void SendTimestepEntryToSingleReader(SstStream Stream, - CPTimestepList Entry, - WS_ReaderInfo CP_WSR_Stream, - int rank) +static void SendTimestepEntryToSingleReader(SstStream Stream, CPTimestepList Entry, + WS_ReaderInfo CP_WSR_Stream, int rank) { STREAM_ASSERT_LOCKED(Stream); if (CP_WSR_Stream->ReaderStatus == Established) { size_t PriorSent = CP_WSR_Stream->FormatSentCount; CP_WSR_Stream->LastSentTimestep = Entry->Timestep; - FFSFormatList ToSend = - ReturnNthListEntry(Stream->PreviousFormats, PriorSent); + FFSFormatList ToSend = ReturnNthListEntry(Stream->PreviousFormats, PriorSent); Entry->Msg->Formats = ToSend; if (rank != -1) { - CP_verbose(Stream, PerRankVerbose, - "Sent timestep %ld to reader cohort %d\n", + CP_verbose(Stream, PerRankVerbose, "Sent timestep %ld to reader cohort %d\n", Entry->Timestep, rank); } Entry->ReferenceCount++; @@ -1169,24 +1092,22 @@ static void SendTimestepEntryToSingleReader(SstStream Stream, CP_verbose(Stream, PerStepVerbose, "PRELOADMODE for timestep %ld non-default for reader , " "active at timestep %ld, mode %d\n", - Entry->Timestep, - CP_WSR_Stream->PreloadModeActiveTimestep, PMode); + Entry->Timestep, CP_WSR_Stream->PreloadModeActiveTimestep, PMode); } Entry->Msg->PreloadMode = PMode; CP_WSR_Stream->FormatSentCount += FormatListCount(ToSend); STREAM_MUTEX_UNLOCK(Stream); if (Stream->DP_Interface->readerRegisterTimestep) { - (Stream->DP_Interface->readerRegisterTimestep)( - &Svcs, CP_WSR_Stream->DP_WSR_Stream, Entry->Timestep, PMode); + (Stream->DP_Interface->readerRegisterTimestep)(&Svcs, CP_WSR_Stream->DP_WSR_Stream, + Entry->Timestep, PMode); } STREAM_MUTEX_LOCK(Stream); if (CP_WSR_Stream->ReaderStatus == Established) - sendOneToWSRCohort( - CP_WSR_Stream, - Stream->CPInfo->SharedCM->DeliverTimestepMetadataFormat, - Entry->Msg, &Entry->Msg->RS_Stream); + sendOneToWSRCohort(CP_WSR_Stream, + Stream->CPInfo->SharedCM->DeliverTimestepMetadataFormat, Entry->Msg, + &Entry->Msg->RS_Stream); } } @@ -1210,13 +1131,10 @@ static void SendTimestepEntryToReaders(SstStream Stream, CPTimestepList Entry) return; if (Stream->NextRRDistribution >= Stream->ReaderCount) Stream->NextRRDistribution = 0; - CP_verbose(Stream, PerRankVerbose, - "Round Robin Distribution, step sent to reader %d\n", + CP_verbose(Stream, PerRankVerbose, "Round Robin Distribution, step sent to reader %d\n", Stream->NextRRDistribution); - WS_ReaderInfo CP_WSR_Stream = - Stream->Readers[Stream->NextRRDistribution]; - SendTimestepEntryToSingleReader(Stream, Entry, CP_WSR_Stream, - Stream->NextRRDistribution); + WS_ReaderInfo CP_WSR_Stream = Stream->Readers[Stream->NextRRDistribution]; + SendTimestepEntryToSingleReader(Stream, Entry, CP_WSR_Stream, Stream->NextRRDistribution); Stream->NextRRDistribution++; } case StepsOnDemand: { @@ -1234,9 +1152,8 @@ static void SendTimestepEntryToReaders(SstStream Stream, CPTimestepList Entry) if (Stream->Readers[RequestingReader]->ReaderStatus == Established) { Stream->LastDemandTimestep = Entry->Timestep; - SendTimestepEntryToSingleReader( - Stream, Entry, Stream->Readers[RequestingReader], - RequestingReader); + SendTimestepEntryToSingleReader(Stream, Entry, Stream->Readers[RequestingReader], + RequestingReader); if ((Stream->CloseTimestepCount != (size_t)-1) && (Stream->LastDemandTimestep == Stream->CloseTimestepCount)) { @@ -1260,15 +1177,14 @@ static void waitForReaderResponseAndSendQueued(WS_ReaderInfo Reader) while (Reader->ReaderStatus == Opening) { CP_verbose(Stream, PerRankVerbose, - "(PID %lx, TID %lx) Waiting for Reader ready on WSR %p.\n", - (long)getpid(), (long)gettid(), Reader); + "(PID %lx, TID %lx) Waiting for Reader ready on WSR %p.\n", (long)getpid(), + (long)gettid(), Reader); STREAM_CONDITION_WAIT(Stream); } if (Reader->ReaderStatus != Established) { - CP_verbose(Stream, CriticalVerbose, - "Reader WSR %p, Failed during startup.\n", Reader); + CP_verbose(Stream, CriticalVerbose, "Reader WSR %p, Failed during startup.\n", Reader); STREAM_MUTEX_UNLOCK(Stream); } /* LOCK */ @@ -1294,16 +1210,14 @@ static void waitForReaderResponseAndSendQueued(WS_ReaderInfo Reader) Reader, Reader->StartingTimestep, Stream->LastProvidedTimestep); if (Stream->ConfigParams->StepDistributionMode == StepsAllToAll) { - for (long TS = Reader->StartingTimestep; - TS <= Stream->LastProvidedTimestep; TS++) + for (long TS = Reader->StartingTimestep; TS <= Stream->LastProvidedTimestep; TS++) { CPTimestepList List = Stream->QueuedTimesteps; while (List) { - CP_verbose( - Stream, TraceVerbose, - "In send queued, trying to send TS %ld, examining TS %ld\n", - TS, List->Timestep); + CP_verbose(Stream, TraceVerbose, + "In send queued, trying to send TS %ld, examining TS %ld\n", TS, + List->Timestep); if (Reader->ReaderStatus != Established) { break; /* break out of while if we've fallen out of @@ -1314,20 +1228,18 @@ static void waitForReaderResponseAndSendQueued(WS_ReaderInfo Reader) { if (List->Expired && !List->PreciousTimestep) { - CP_verbose( - Stream, TraceVerbose, - "Reader send queued skipping TS %d, expired " - "and not precious\n", - List->Timestep, TS); + CP_verbose(Stream, TraceVerbose, + "Reader send queued skipping TS %d, expired " + "and not precious\n", + List->Timestep, TS); List = List->Next; continue; /* skip timestep is expired, but not precious */ } - CP_verbose( - Stream, PerStepVerbose, - "Sending Queued TimestepMetadata for timestep %d, " - "reference count = %d\n", - TS, List->ReferenceCount); + CP_verbose(Stream, PerStepVerbose, + "Sending Queued TimestepMetadata for timestep %d, " + "reference count = %d\n", + TS, List->ReferenceCount); SendTimestepEntryToSingleReader(Stream, List, Reader, -1); } @@ -1359,13 +1271,11 @@ SstStream SstWriterOpen(const char *Name, SstParams Params, SMPI_Comm comm) // printf("WRITER main program thread PID is %lx, TID %lx in writer // open\n", // (long)getpid(), (long)gettid()); - Stream->DP_Interface = - SelectDP(&Svcs, Stream, Stream->ConfigParams, Stream->Rank); + Stream->DP_Interface = SelectDP(&Svcs, Stream, Stream->ConfigParams, Stream->Rank); if (!Stream->DP_Interface) { - CP_verbose(Stream, CriticalVerbose, - "Failed to load DataPlane %s for Stream \"%s\"\n", + CP_verbose(Stream, CriticalVerbose, "Failed to load DataPlane %s for Stream \"%s\"\n", Params->DataTransport, Filename); return NULL; } @@ -1374,8 +1284,7 @@ SstStream SstWriterOpen(const char *Name, SstParams Params, SMPI_Comm comm) if (Stream->RendezvousReaderCount > 0) { - Stream->FirstReaderCondition = - CMCondition_get(Stream->CPInfo->SharedCM->cm, NULL); + Stream->FirstReaderCondition = CMCondition_get(Stream->CPInfo->SharedCM->cm, NULL); } else { @@ -1383,8 +1292,8 @@ SstStream SstWriterOpen(const char *Name, SstParams Params, SMPI_Comm comm) } attr_list DPAttrs = create_attr_list(); - Stream->DP_Stream = Stream->DP_Interface->initWriter( - &Svcs, Stream, Stream->ConfigParams, DPAttrs, &Stream->Stats); + Stream->DP_Stream = Stream->DP_Interface->initWriter(&Svcs, Stream, Stream->ConfigParams, + DPAttrs, &Stream->Stats); if (Stream->Rank == 0) { @@ -1401,15 +1310,13 @@ SstStream SstWriterOpen(const char *Name, SstParams Params, SMPI_Comm comm) if (globalNetinfoCallback) { - (globalNetinfoCallback)(0, CP_GetContactString(Stream, DPAttrs), - IPDiagString); + (globalNetinfoCallback)(0, CP_GetContactString(Stream, DPAttrs), IPDiagString); } free_attr_list(DPAttrs); while (Stream->RendezvousReaderCount > 0) { WS_ReaderInfo reader; - CP_verbose(Stream, PerStepVerbose, - "Stream \"%s\" waiting for %d readers\n", Filename, + CP_verbose(Stream, PerStepVerbose, "Stream \"%s\" waiting for %d readers\n", Filename, Stream->RendezvousReaderCount); if (Stream->Rank == 0) { @@ -1438,13 +1345,11 @@ SstStream SstWriterOpen(const char *Name, SstParams Params, SMPI_Comm comm) if (Stream->Rank == 0) { waitForReaderResponseAndSendQueued(reader); - SMPI_Bcast(&reader->ReaderStatus, 1, SMPI_INT, 0, - Stream->mpiComm); + SMPI_Bcast(&reader->ReaderStatus, 1, SMPI_INT, 0, Stream->mpiComm); } else { - SMPI_Bcast(&reader->ReaderStatus, 1, SMPI_INT, 0, - Stream->mpiComm); + SMPI_Bcast(&reader->ReaderStatus, 1, SMPI_INT, 0, Stream->mpiComm); } } Stream->RendezvousReaderCount--; @@ -1452,14 +1357,12 @@ SstStream SstWriterOpen(const char *Name, SstParams Params, SMPI_Comm comm) gettimeofday(&Stream->ValidStartTime, NULL); Stream->Filename = Filename; Stream->Status = Established; - CP_verbose(Stream, PerStepVerbose, "Finish opening Stream \"%s\"\n", - Filename); + CP_verbose(Stream, PerStepVerbose, "Finish opening Stream \"%s\"\n", Filename); AddToLastCallFreeList(Stream); return Stream; } -void sendOneToEachReaderRank(SstStream Stream, CMFormat f, void *Msg, - void **RS_StreamPtr) +void sendOneToEachReaderRank(SstStream Stream, CMFormat f, void *Msg, void **RS_StreamPtr) { STREAM_ASSERT_LOCKED(Stream); for (int i = 0; i < Stream->ReaderCount; i++) @@ -1467,8 +1370,7 @@ void sendOneToEachReaderRank(SstStream Stream, CMFormat f, void *Msg, WS_ReaderInfo CP_WSR_Stream = Stream->Readers[i]; if (CP_WSR_Stream->ReaderStatus == Established) { - CP_verbose(Stream, TraceVerbose, "Working on reader cohort %d\n", - i); + CP_verbose(Stream, TraceVerbose, "Working on reader cohort %d\n", i); } else { @@ -1479,8 +1381,7 @@ void sendOneToEachReaderRank(SstStream Stream, CMFormat f, void *Msg, } } -static void CP_PeerFailCloseWSReader(WS_ReaderInfo CP_WSR_Stream, - enum StreamStatus NewState); +static void CP_PeerFailCloseWSReader(WS_ReaderInfo CP_WSR_Stream, enum StreamStatus NewState); static void CloseWSRStream(CManager cm, void *WSR_Stream_v) { @@ -1488,8 +1389,7 @@ static void CloseWSRStream(CManager cm, void *WSR_Stream_v) SstStream ParentStream = CP_WSR_Stream->ParentStream; STREAM_MUTEX_LOCK(ParentStream); - CP_verbose(ParentStream, PerRankVerbose, - "Delayed task Moving Reader stream %p to status %s\n", + CP_verbose(ParentStream, PerRankVerbose, "Delayed task Moving Reader stream %p to status %s\n", CP_WSR_Stream, SSTStreamStatusStr[PeerClosed]); CP_PeerFailCloseWSReader(CP_WSR_Stream, PeerClosed); @@ -1503,17 +1403,15 @@ static void CloseWSRStream(CManager cm, void *WSR_Stream_v) STREAM_MUTEX_UNLOCK(ParentStream); } -static void CP_PeerFailCloseWSReader(WS_ReaderInfo CP_WSR_Stream, - enum StreamStatus NewState) +static void CP_PeerFailCloseWSReader(WS_ReaderInfo CP_WSR_Stream, enum StreamStatus NewState) { SstStream ParentStream = CP_WSR_Stream->ParentStream; STREAM_ASSERT_LOCKED(ParentStream); if (ParentStream->Status != Established) { - CP_verbose( - ParentStream, TraceVerbose, - "In PeerFailCloseWSReader, but Parent status not Established, %d\n", - ParentStream->Status); + CP_verbose(ParentStream, TraceVerbose, + "In PeerFailCloseWSReader, but Parent status not Established, %d\n", + ParentStream->Status); return; } @@ -1528,15 +1426,13 @@ static void CP_PeerFailCloseWSReader(WS_ReaderInfo CP_WSR_Stream, CP_WSR_Stream->ReaderStatus = NewState; STREAM_CONDITION_SIGNAL(ParentStream); - if ((NewState == PeerClosed) || (NewState == Closed) || - (NewState == PeerFailed)) + if ((NewState == PeerClosed) || (NewState == Closed) || (NewState == PeerFailed)) { // enter this on fail or deliberate close CP_verbose(ParentStream, PerRankVerbose, "In PeerFailCloseWSReader, releasing sent timesteps\n"); DerefAllSentTimesteps(CP_WSR_Stream->ParentStream, CP_WSR_Stream); - CP_WSR_Stream->OldestUnreleasedTimestep = - CP_WSR_Stream->LastSentTimestep + 1; + CP_WSR_Stream->OldestUnreleasedTimestep = CP_WSR_Stream->LastSentTimestep + 1; for (int i = 0; i < CP_WSR_Stream->ReaderCohortSize; i++) { if (CP_WSR_Stream->Connections[i].CMconn) @@ -1548,25 +1444,22 @@ static void CP_PeerFailCloseWSReader(WS_ReaderInfo CP_WSR_Stream, if (NewState == PeerFailed) { // move to fully closed state later - CMfree(CMadd_delayed_task(ParentStream->CPInfo->SharedCM->cm, 2, 0, - CloseWSRStream, CP_WSR_Stream)); + CMfree(CMadd_delayed_task(ParentStream->CPInfo->SharedCM->cm, 2, 0, CloseWSRStream, + CP_WSR_Stream)); } else { - if (strncmp("mpi", ParentStream->ConfigParams->DataTransport, 3) == - 0 && + if (strncmp("mpi", ParentStream->ConfigParams->DataTransport, 3) == 0 && CP_WSR_Stream->DP_WSR_Stream) { - CP_WSR_Stream->ParentStream->DP_Interface - ->destroyWriterPerReader(&Svcs, - CP_WSR_Stream->DP_WSR_Stream); + CP_WSR_Stream->ParentStream->DP_Interface->destroyWriterPerReader( + &Svcs, CP_WSR_Stream->DP_WSR_Stream); CP_WSR_Stream->DP_WSR_Stream = NULL; } } } - CP_verbose(ParentStream, PerStepVerbose, - "Moving Reader stream %p to status %s\n", CP_WSR_Stream, - SSTStreamStatusStr[NewState]); + CP_verbose(ParentStream, PerStepVerbose, "Moving Reader stream %p to status %s\n", + CP_WSR_Stream, SSTStreamStatusStr[NewState]); QueueMaintenance(ParentStream); } @@ -1577,13 +1470,12 @@ static void SendCloseMsgs(SstStream Stream) STREAM_ASSERT_LOCKED(Stream); memset(&Msg, 0, sizeof(Msg)); Msg.FinalTimestep = Stream->LastProvidedTimestep; - CP_verbose( - Stream, PerStepVerbose, - "SstWriterClose, Sending Close at Timestep %d, one to each reader\n", - Msg.FinalTimestep); + CP_verbose(Stream, PerStepVerbose, + "SstWriterClose, Sending Close at Timestep %d, one to each reader\n", + Msg.FinalTimestep); - sendOneToEachReaderRank(Stream, Stream->CPInfo->SharedCM->WriterCloseFormat, - &Msg, &Msg.RS_Stream); + sendOneToEachReaderRank(Stream, Stream->CPInfo->SharedCM->WriterCloseFormat, &Msg, + &Msg.RS_Stream); } /* @@ -1617,19 +1509,16 @@ void SstWriterClose(SstStream Stream) // sleep briefly to allow for outgoing close messages to arrive usleep(100 * 1000); - if ((Stream->ConfigParams->CPCommPattern == SstCPCommPeer) || - (Stream->Rank == 0)) + if ((Stream->ConfigParams->CPCommPattern == SstCPCommPeer) || (Stream->Rank == 0)) { if (Stream->ReleaseCount > 0) { if (Stream->ConfigParams->CPCommPattern == SstCPCommMin) { - SMPI_Bcast(&Stream->ReleaseCount, 1, SMPI_INT, 0, - Stream->mpiComm); + SMPI_Bcast(&Stream->ReleaseCount, 1, SMPI_INT, 0, Stream->mpiComm); SMPI_Bcast(Stream->ReleaseList, - Stream->ReleaseCount * - sizeof(*(Stream->ReleaseList)), - SMPI_BYTE, 0, Stream->mpiComm); + Stream->ReleaseCount * sizeof(*(Stream->ReleaseList)), SMPI_BYTE, 0, + Stream->mpiComm); } Stream->ReleaseCount = 0; free(Stream->ReleaseList); @@ -1651,39 +1540,33 @@ void SstWriterClose(SstStream Stream) CP_verbose(Stream, TraceVerbose, "IN TS WAIT, ENTRIES are Timestep %ld (exp %d, " "Prec %d, Ref %d), Count now %d\n", - List->Timestep, List->Expired, - List->PreciousTimestep, List->ReferenceCount, - Stream->QueuedTimestepCount); + List->Timestep, List->Expired, List->PreciousTimestep, + List->ReferenceCount, Stream->QueuedTimestepCount); snprintf(tmp, sizeof(tmp), "%ld ", List->Timestep); - StringList = realloc(StringList, - strlen(StringList) + strlen(tmp) + 1); + StringList = realloc(StringList, strlen(StringList) + strlen(tmp) + 1); strcat(StringList, tmp); List = List->Next; } - CP_verbose(Stream, TraceVerbose, - "The timesteps still queued are: %s\n", StringList); + CP_verbose(Stream, TraceVerbose, "The timesteps still queued are: %s\n", + StringList); free(StringList); } - CP_verbose(Stream, TraceVerbose, "Reader Count is %d\n", - Stream->ReaderCount); + CP_verbose(Stream, TraceVerbose, "Reader Count is %d\n", Stream->ReaderCount); for (int i = 0; i < Stream->ReaderCount; i++) { - CP_verbose( - Stream, TraceVerbose, "Reader [%d] status is %s\n", i, - SSTStreamStatusStr[Stream->Readers[i]->ReaderStatus]); + CP_verbose(Stream, TraceVerbose, "Reader [%d] status is %s\n", i, + SSTStreamStatusStr[Stream->Readers[i]->ReaderStatus]); } /* NEED TO HANDLE FAILURE HERE */ STREAM_CONDITION_WAIT(Stream); if (Stream->ConfigParams->CPCommPattern == SstCPCommMin) { - SMPI_Bcast(&Stream->ReleaseCount, 1, SMPI_INT, 0, - Stream->mpiComm); + SMPI_Bcast(&Stream->ReleaseCount, 1, SMPI_INT, 0, Stream->mpiComm); if (Stream->ReleaseCount > 0) { SMPI_Bcast(Stream->ReleaseList, - Stream->ReleaseCount * - sizeof(*(Stream->ReleaseList)), - SMPI_BYTE, 0, Stream->mpiComm); + Stream->ReleaseCount * sizeof(*(Stream->ReleaseList)), SMPI_BYTE, 0, + Stream->mpiComm); Stream->ReleaseCount = 0; free(Stream->ReleaseList); Stream->ReleaseList = NULL; @@ -1705,8 +1588,7 @@ void SstWriterClose(SstStream Stream) struct _ReturnMetadataInfo ReleaseData; while (1) { - SMPI_Bcast(&ReleaseData.ReleaseCount, 1, SMPI_INT, 0, - Stream->mpiComm); + SMPI_Bcast(&ReleaseData.ReleaseCount, 1, SMPI_INT, 0, Stream->mpiComm); if (ReleaseData.ReleaseCount == -1) { break; @@ -1714,11 +1596,9 @@ void SstWriterClose(SstStream Stream) else if (ReleaseData.ReleaseCount > 0) { ReleaseData.ReleaseList = - malloc(ReleaseData.ReleaseCount * - sizeof(*ReleaseData.ReleaseList)); + malloc(ReleaseData.ReleaseCount * sizeof(*ReleaseData.ReleaseList)); SMPI_Bcast(ReleaseData.ReleaseList, - ReleaseData.ReleaseCount * - sizeof(*ReleaseData.ReleaseList), + ReleaseData.ReleaseCount * sizeof(*ReleaseData.ReleaseList), SMPI_BYTE, 0, Stream->mpiComm); STREAM_MUTEX_UNLOCK(Stream); ProcessReleaseList(Stream, &ReleaseData); @@ -1739,15 +1619,13 @@ void SstWriterClose(SstStream Stream) STREAM_MUTEX_UNLOCK(Stream); gettimeofday(&CloseTime, NULL); timersub(&CloseTime, &Stream->ValidStartTime, &Diff); - Stream->Stats.StreamValidTimeSecs = - (double)Diff.tv_usec / 1e6 + Diff.tv_sec; + Stream->Stats.StreamValidTimeSecs = (double)Diff.tv_usec / 1e6 + Diff.tv_sec; if (Stream->CPVerbosityLevel >= (int)SummaryVerbose) { DoStreamSummary(Stream); } - CP_verbose(Stream, PerStepVerbose, - "All timesteps are released in WriterClose\n"); + CP_verbose(Stream, PerStepVerbose, "All timesteps are released in WriterClose\n"); /* * Only rank 0 removes contact info, and only when everything is closed. @@ -1780,8 +1658,7 @@ static size_t FormatListCount(FFSFormatList List) return count; } -static FFSFormatList AddUniqueFormats(FFSFormatList List, - FFSFormatList Candidates, int copy) +static FFSFormatList AddUniqueFormats(FFSFormatList List, FFSFormatList Candidates, int copy) { while (Candidates) { @@ -1792,8 +1669,7 @@ static FFSFormatList AddUniqueFormats(FFSFormatList List, while (Tmp) { if ((Tmp->FormatIDRepLen == ThisCandidate->FormatIDRepLen) && - (memcmp(Tmp->FormatIDRep, ThisCandidate->FormatIDRep, - Tmp->FormatIDRepLen) == 0)) + (memcmp(Tmp->FormatIDRep, ThisCandidate->FormatIDRep, Tmp->FormatIDRepLen) == 0)) { // Identical format already in List, don't add this one Found++; @@ -1810,14 +1686,12 @@ static FFSFormatList AddUniqueFormats(FFSFormatList List, // Copy top Candidates entry before return FFSFormatList Tmp = malloc(sizeof(*Tmp)); memset(Tmp, 0, sizeof(*Tmp)); - Tmp->FormatServerRep = - malloc(ThisCandidate->FormatServerRepLen); + Tmp->FormatServerRep = malloc(ThisCandidate->FormatServerRepLen); memcpy(Tmp->FormatServerRep, ThisCandidate->FormatServerRep, ThisCandidate->FormatServerRepLen); Tmp->FormatServerRepLen = ThisCandidate->FormatServerRepLen; Tmp->FormatIDRep = malloc(ThisCandidate->FormatIDRepLen); - memcpy(Tmp->FormatIDRep, ThisCandidate->FormatIDRep, - ThisCandidate->FormatIDRepLen); + memcpy(Tmp->FormatIDRep, ThisCandidate->FormatIDRep, ThisCandidate->FormatIDRepLen); Tmp->FormatIDRepLen = ThisCandidate->FormatIDRepLen; ThisCandidate = Tmp; } @@ -1852,8 +1726,7 @@ static void *FillMetadataMsg(SstStream Stream, struct _TimestepMetadataMsg *Msg, /* separate metadata and DP_info to separate arrays */ Msg->Metadata = malloc(Stream->CohortSize * sizeof(Msg->Metadata[0])); Msg->AttributeData = malloc(Stream->CohortSize * sizeof(Msg->Metadata[0])); - Msg->DP_TimestepInfo = - malloc(Stream->CohortSize * sizeof(Msg->DP_TimestepInfo[0])); + Msg->DP_TimestepInfo = malloc(Stream->CohortSize * sizeof(Msg->DP_TimestepInfo[0])); int NullCount = 0; for (int i = 0; i < Stream->CohortSize; i++) { @@ -1889,9 +1762,8 @@ static void *FillMetadataMsg(SstStream Stream, struct _TimestepMetadataMsg *Msg, if (Stream->AssembleMetadataUpcall) { - MetadataFreeValue = Stream->AssembleMetadataUpcall( - Stream->UpcallWriter, Stream->CohortSize, Msg->Metadata, - Msg->AttributeData); + MetadataFreeValue = Stream->AssembleMetadataUpcall(Stream->UpcallWriter, Stream->CohortSize, + Msg->Metadata, Msg->AttributeData); /* Assume rank 0 values alone are useful now, zero others */ for (int i = 1; i < Stream->CohortSize; i++) { @@ -1904,26 +1776,22 @@ static void *FillMetadataMsg(SstStream Stream, struct _TimestepMetadataMsg *Msg, free(pointers); - Stream->PreviousFormats = - AddUniqueFormats(Stream->PreviousFormats, XmitFormats, /*copy*/ 1); + Stream->PreviousFormats = AddUniqueFormats(Stream->PreviousFormats, XmitFormats, /*copy*/ 1); return MetadataFreeValue; } -static void ProcessReaderStatusList(SstStream Stream, - ReturnMetadataInfo Metadata) +static void ProcessReaderStatusList(SstStream Stream, ReturnMetadataInfo Metadata) { STREAM_MUTEX_LOCK(Stream); for (int i = 0; i < Metadata->ReaderCount; i++) { if (Stream->Readers[i]->ReaderStatus != Metadata->ReaderStatus[i]) { - CP_verbose(Stream, PerRankVerbose, - "Adjusting reader %d status from %s to %s\n", i, + CP_verbose(Stream, PerRankVerbose, "Adjusting reader %d status from %s to %s\n", i, SSTStreamStatusStr[Stream->Readers[i]->ReaderStatus], SSTStreamStatusStr[Metadata->ReaderStatus[i]]); - CP_PeerFailCloseWSReader(Stream->Readers[i], - Metadata->ReaderStatus[i]); + CP_PeerFailCloseWSReader(Stream->Readers[i], Metadata->ReaderStatus[i]); } } STREAM_MUTEX_UNLOCK(Stream); @@ -1949,10 +1817,9 @@ static void ActOnTSLockStatus(SstStream Stream, long Timestep) } Msg.Timestep = Timestep; SomethingSent++; - sendOneToWSRCohort( - Stream->Readers[i], - Stream->CPInfo->SharedCM->CommPatternLockedFormat, &Msg, - &Msg.RS_Stream); + sendOneToWSRCohort(Stream->Readers[i], + Stream->CPInfo->SharedCM->CommPatternLockedFormat, &Msg, + &Msg.RS_Stream); Stream->Readers[i]->PreloadMode = SstPreloadLearned; Stream->Readers[i]->PreloadModeActiveTimestep = Timestep; CP_verbose(Stream, PerStepVerbose, @@ -1963,9 +1830,8 @@ static void ActOnTSLockStatus(SstStream Stream, long Timestep) } if (SomethingSent) { - CP_verbose( - Stream, TraceVerbose, - "Doing a barrier after notifying DP of preload mode changes\n"); + CP_verbose(Stream, TraceVerbose, + "Doing a barrier after notifying DP of preload mode changes\n"); SMPI_Barrier(Stream->mpiComm); } @@ -1989,8 +1855,7 @@ static void ProcessReleaseList(SstStream Stream, ReturnMetadataInfo Metadata) int j; for (j = 0; j < Stream->ReaderCount; j++) { - if (Stream->Readers[j]->RankZeroID == - Metadata->ReleaseList[i].Reader) + if (Stream->Readers[j]->RankZeroID == Metadata->ReleaseList[i].Reader) { break; } @@ -1998,8 +1863,7 @@ static void ProcessReleaseList(SstStream Stream, ReturnMetadataInfo Metadata) assert(j < Stream->ReaderCount); if (List->Timestep > Stream->Readers[j]->LastReleasedTimestep) { - CP_verbose(Stream, TraceVerbose, - "Updating reader %d last released to %ld\n", j, + CP_verbose(Stream, TraceVerbose, "Updating reader %d last released to %ld\n", j, List->Timestep); Stream->Readers[j]->LastReleasedTimestep = List->Timestep; } @@ -2010,8 +1874,7 @@ static void ProcessReleaseList(SstStream Stream, ReturnMetadataInfo Metadata) if (Stream->DP_Interface->readerReleaseTimestep) { (Stream->DP_Interface->readerReleaseTimestep)( - &Svcs, Stream->Readers[j]->DP_WSR_Stream, - List->Timestep); + &Svcs, Stream->Readers[j]->DP_WSR_Stream, List->Timestep); } List->ReferenceCount = 0; @@ -2032,8 +1895,7 @@ static void ProcessLockDefnsList(SstStream Stream, ReturnMetadataInfo Metadata) /* find local reader that matches global reader */ for (j = 0; j < Stream->ReaderCount; j++) { - if (Stream->Readers[j]->RankZeroID == - Metadata->LockDefnsList[i].Reader) + if (Stream->Readers[j]->RankZeroID == Metadata->LockDefnsList[i].Reader) { break; } @@ -2177,11 +2039,11 @@ on reader close: */ -extern void SstInternalProvideTimestep( - SstStream Stream, SstData LocalMetadata, SstData Data, long Timestep, - FFSFormatList Formats, DataFreeFunc FreeTimestep, void *FreeClientData, - SstData AttributeData, DataFreeFunc FreeAttributeData, - void *FreeAttributelientData) +extern void SstInternalProvideTimestep(SstStream Stream, SstData LocalMetadata, SstData Data, + long Timestep, FFSFormatList Formats, + DataFreeFunc FreeTimestep, void *FreeClientData, + SstData AttributeData, DataFreeFunc FreeAttributeData, + void *FreeAttributelientData) { void *data_block1, *data_block2; MetadataPlusDPInfo *pointers; @@ -2197,8 +2059,7 @@ extern void SstInternalProvideTimestep( Stream->WriterTimestep = Timestep; STREAM_MUTEX_UNLOCK(Stream); - Stream->DP_Interface->provideTimestep(&Svcs, Stream->DP_Stream, Data, - LocalMetadata, Timestep, + Stream->DP_Interface->provideTimestep(&Svcs, Stream->DP_Stream, Data, LocalMetadata, Timestep, &DP_TimestepInfo); if (Formats) { @@ -2222,8 +2083,7 @@ extern void SstInternalProvideTimestep( } if (LocalMetadata) { - PERFSTUBS_SAMPLE_COUNTER("Timestep local metadata size", - LocalMetadata->DataSize); + PERFSTUBS_SAMPLE_COUNTER("Timestep local metadata size", LocalMetadata->DataSize); } /* preliminary queue of message before metadata collection. Timestep may @@ -2234,8 +2094,7 @@ extern void SstInternalProvideTimestep( { Entry->PreciousTimestep = 1; } - Entry->ReferenceCount = - 1; /* holding one for us, so it doesn't disappear under us */ + Entry->ReferenceCount = 1; /* holding one for us, so it doesn't disappear under us */ Entry->DPRegistered = 1; Entry->Timestep = Timestep; Entry->Msg = Msg; @@ -2280,11 +2139,9 @@ extern void SstInternalProvideTimestep( } else { - while ((Stream->QueueLimit > 0) && - (Stream->QueuedTimestepCount > Stream->QueueLimit)) + while ((Stream->QueueLimit > 0) && (Stream->QueuedTimestepCount > Stream->QueueLimit)) { - CP_verbose(Stream, PerStepVerbose, - "Blocking on QueueFull condition\n"); + CP_verbose(Stream, PerStepVerbose, "Blocking on QueueFull condition\n"); STREAM_CONDITION_WAIT(Stream); } } @@ -2301,8 +2158,7 @@ extern void SstInternalProvideTimestep( TimestepMetaData.ReleaseList = Stream->ReleaseList; TimestepMetaData.LockDefnsCount = Stream->LockDefnsCount; TimestepMetaData.LockDefnsList = Stream->LockDefnsList; - TimestepMetaData.ReaderStatus = - malloc(sizeof(enum StreamStatus) * Stream->ReaderCount); + TimestepMetaData.ReaderStatus = malloc(sizeof(enum StreamStatus) * Stream->ReaderCount); TimestepMetaData.ReaderCount = Stream->ReaderCount; for (int i = 0; i < Stream->ReaderCount; i++) { @@ -2312,16 +2168,14 @@ extern void SstInternalProvideTimestep( Stream->ReleaseList = NULL; Stream->LockDefnsCount = 0; Stream->LockDefnsList = NULL; - MetadataFreeValue = - FillMetadataMsg(Stream, &TimestepMetaData.Msg, pointers); + MetadataFreeValue = FillMetadataMsg(Stream, &TimestepMetaData.Msg, pointers); STREAM_MUTEX_UNLOCK(Stream); ReturnData = CP_distributeDataFromRankZero( - Stream, &TimestepMetaData, Stream->CPInfo->ReturnMetadataInfoFormat, - &data_block2); + Stream, &TimestepMetaData, Stream->CPInfo->ReturnMetadataInfoFormat, &data_block2); if (Stream->FreeMetadataUpcall) { - Stream->FreeMetadataUpcall(Stream->UpcallWriter, Msg->Metadata, - Msg->AttributeData, MetadataFreeValue); + Stream->FreeMetadataUpcall(Stream->UpcallWriter, Msg->Metadata, Msg->AttributeData, + MetadataFreeValue); } free(TimestepMetaData.ReaderStatus); if (TimestepMetaData.ReleaseList) @@ -2335,10 +2189,9 @@ extern void SstInternalProvideTimestep( { /* other ranks */ ReturnData = CP_distributeDataFromRankZero( - Stream, NULL, Stream->CPInfo->ReturnMetadataInfoFormat, - &data_block2); - Stream->PreviousFormats = AddUniqueFormats( - Stream->PreviousFormats, ReturnData->Msg.Formats, /*copy*/ 1); + Stream, NULL, Stream->CPInfo->ReturnMetadataInfoFormat, &data_block2); + Stream->PreviousFormats = + AddUniqueFormats(Stream->PreviousFormats, ReturnData->Msg.Formats, /*copy*/ 1); } free(data_block1); PendingReaderCount = ReturnData->PendingReaderCount; @@ -2359,8 +2212,7 @@ extern void SstInternalProvideTimestep( ProcessLockDefnsList(Stream, ReturnData); - if ((Stream->ConfigParams->CPCommPattern == SstCPCommMin) && - (Stream->Rank != 0)) + if ((Stream->ConfigParams->CPCommPattern == SstCPCommMin) && (Stream->Rank != 0)) { ProcessReleaseList(Stream, ReturnData); } @@ -2381,9 +2233,8 @@ extern void SstInternalProvideTimestep( Timestep); STREAM_MUTEX_LOCK(Stream); - sendOneToEachReaderRank( - Stream, Stream->CPInfo->SharedCM->DeliverTimestepMetadataFormat, - Msg, &Msg->RS_Stream); + sendOneToEachReaderRank(Stream, Stream->CPInfo->SharedCM->DeliverTimestepMetadataFormat, + Msg, &Msg->RS_Stream); Entry->Expired = 1; Entry->ReferenceCount = 0; @@ -2410,9 +2261,8 @@ extern void SstInternalProvideTimestep( WS_ReaderInfo reader; if (Stream->Rank == 0) { - CP_verbose( - Stream, SummaryVerbose, - "Writer side ReaderLateArrival accepting incoming reader\n"); + CP_verbose(Stream, SummaryVerbose, + "Writer side ReaderLateArrival accepting incoming reader\n"); } reader = WriterParticipateInReaderOpen(Stream); if (!reader) @@ -2450,14 +2300,11 @@ extern void SstInternalProvideTimestep( static void UpdateLockDefnsList(SstStream Stream, WS_ReaderInfo CP_WSR_Stream, long EffectiveTimestep) { - if (Stream->WriterDefinitionsLocked && - CP_WSR_Stream->LocalReaderDefinitionsLocked) - { - Stream->LockDefnsList = - realloc(Stream->LockDefnsList, sizeof(Stream->LockDefnsList[0]) * - (Stream->LockDefnsCount + 1)); - Stream->LockDefnsList[Stream->LockDefnsCount].Timestep = - EffectiveTimestep; + if (Stream->WriterDefinitionsLocked && CP_WSR_Stream->LocalReaderDefinitionsLocked) + { + Stream->LockDefnsList = realloc(Stream->LockDefnsList, sizeof(Stream->LockDefnsList[0]) * + (Stream->LockDefnsCount + 1)); + Stream->LockDefnsList[Stream->LockDefnsCount].Timestep = EffectiveTimestep; // this only happens on rank 0, so CP_WSR_Stream is our global reader // stream identifier Stream->LockDefnsList[Stream->LockDefnsCount].Reader = CP_WSR_Stream; @@ -2477,30 +2324,24 @@ extern void SstWriterDefinitionLock(SstStream Stream, long EffectiveTimestep) } } STREAM_MUTEX_UNLOCK(Stream); - CP_verbose(Stream, PerStepVerbose, - "Writer-side definitions lock as of timestep %d\n", + CP_verbose(Stream, PerStepVerbose, "Writer-side definitions lock as of timestep %d\n", EffectiveTimestep); } -extern void SstProvideTimestep(SstStream Stream, SstData LocalMetadata, - SstData Data, long Timestep, +extern void SstProvideTimestep(SstStream Stream, SstData LocalMetadata, SstData Data, long Timestep, DataFreeFunc FreeTimestep, void *FreeClientData, - SstData AttributeData, - DataFreeFunc FreeAttributeData, + SstData AttributeData, DataFreeFunc FreeAttributeData, void *FreeAttributeClientData) { - SstInternalProvideTimestep(Stream, LocalMetadata, Data, Timestep, NULL, - FreeTimestep, FreeClientData, AttributeData, - FreeAttributeData, FreeAttributeClientData); + SstInternalProvideTimestep(Stream, LocalMetadata, Data, Timestep, NULL, FreeTimestep, + FreeClientData, AttributeData, FreeAttributeData, + FreeAttributeClientData); } -extern void SstProvideTimestepMM(SstStream Stream, SstData LocalMetadata, - SstData Data, long Timestep, - DataFreeFunc FreeTimestep, - void *FreeClientData, SstData AttributeData, - DataFreeFunc FreeAttributeData, - void *FreeAttributeClientData, - struct _SstMetaMetaBlock *MMBlocks) +extern void SstProvideTimestepMM(SstStream Stream, SstData LocalMetadata, SstData Data, + long Timestep, DataFreeFunc FreeTimestep, void *FreeClientData, + SstData AttributeData, DataFreeFunc FreeAttributeData, + void *FreeAttributeClientData, struct _SstMetaMetaBlock *MMBlocks) { FFSFormatList Formats = NULL; while (MMBlocks && MMBlocks->BlockData) @@ -2514,9 +2355,9 @@ extern void SstProvideTimestepMM(SstStream Stream, SstData LocalMetadata, Formats = New; MMBlocks++; } - SstInternalProvideTimestep(Stream, LocalMetadata, Data, Timestep, Formats, - FreeTimestep, FreeClientData, AttributeData, - FreeAttributeData, FreeAttributeClientData); + SstInternalProvideTimestep(Stream, LocalMetadata, Data, Timestep, Formats, FreeTimestep, + FreeClientData, AttributeData, FreeAttributeData, + FreeAttributeClientData); while (Formats) { FFSFormatList Tmp = Formats->Next; @@ -2525,8 +2366,7 @@ extern void SstProvideTimestepMM(SstStream Stream, SstData LocalMetadata, } } -void queueReaderRegisterMsgAndNotify(SstStream Stream, - struct _ReaderRegisterMsg *Req, +void queueReaderRegisterMsgAndNotify(SstStream Stream, struct _ReaderRegisterMsg *Req, CMConnection conn) { STREAM_MUTEX_LOCK(Stream); @@ -2551,8 +2391,8 @@ void queueReaderRegisterMsgAndNotify(SstStream Stream, STREAM_MUTEX_UNLOCK(Stream); } -void CP_ReaderCloseHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) +void CP_ReaderCloseHandler(CManager cm, CMConnection conn, void *Msg_v, void *client_data, + attr_list attrs) { PERFSTUBS_TIMER_START_FUNC(timer); struct _ReaderCloseMsg *Msg = (struct _ReaderCloseMsg *)Msg_v; @@ -2575,8 +2415,8 @@ void CP_ReaderCloseHandler(CManager cm, CMConnection conn, void *Msg_v, PERFSTUBS_TIMER_STOP_FUNC(timer); } -void CP_DPQueryHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) +void CP_DPQueryHandler(CManager cm, CMConnection conn, void *Msg_v, void *client_data, + attr_list attrs) { PERFSTUBS_REGISTER_THREAD(); PERFSTUBS_TIMER_START_FUNC(timer); @@ -2588,21 +2428,18 @@ void CP_DPQueryHandler(CManager cm, CMConnection conn, void *Msg_v, memset(&response, 0, sizeof(response)); response.WriterResponseCondition = Msg->WriterResponseCondition; response.OperativeDP = Stream->DP_Interface->DPName; - res = CMwrite(conn, Stream->CPInfo->SharedCM->DPQueryResponseFormat, - &response); + res = CMwrite(conn, Stream->CPInfo->SharedCM->DPQueryResponseFormat, &response); if (res != 1) { - CP_verbose( - Stream, PerStepVerbose, - "Message failed to send to unregistered reader on writer %p\n", - Stream); + CP_verbose(Stream, PerStepVerbose, + "Message failed to send to unregistered reader on writer %p\n", Stream); } PERFSTUBS_TIMER_STOP_FUNC(timer); } -void CP_ReaderRegisterHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) +void CP_ReaderRegisterHandler(CManager cm, CMConnection conn, void *Msg_v, void *client_data, + attr_list attrs) { PERFSTUBS_REGISTER_THREAD(); PERFSTUBS_TIMER_START_FUNC(timer); @@ -2634,8 +2471,8 @@ void CP_ReaderRegisterHandler(CManager cm, CMConnection conn, void *Msg_v, PERFSTUBS_TIMER_STOP_FUNC(timer); } -void CP_ReaderActivateHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) +void CP_ReaderActivateHandler(CManager cm, CMConnection conn, void *Msg_v, void *client_data, + attr_list attrs) { PERFSTUBS_TIMER_START_FUNC(timer); struct _ReaderActivateMsg *Msg = (struct _ReaderActivateMsg *)Msg_v; @@ -2647,8 +2484,7 @@ void CP_ReaderActivateHandler(CManager cm, CMConnection conn, void *Msg_v, "Established.\n", CP_WSR_Stream); CP_verbose(CP_WSR_Stream->ParentStream, PerStepVerbose, - "Parent stream reader count is now %d.\n", - CP_WSR_Stream->ParentStream->ReaderCount); + "Parent stream reader count is now %d.\n", CP_WSR_Stream->ParentStream->ReaderCount); STREAM_MUTEX_LOCK(CP_WSR_Stream->ParentStream); CP_WSR_Stream->ReaderStatus = Established; /* @@ -2659,8 +2495,8 @@ void CP_ReaderActivateHandler(CManager cm, CMConnection conn, void *Msg_v, PERFSTUBS_TIMER_STOP_FUNC(timer); } -void CP_ReaderRequestStepHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) +void CP_ReaderRequestStepHandler(CManager cm, CMConnection conn, void *Msg_v, void *client_data, + attr_list attrs) { struct _ReaderRequestStepMsg *Msg = (struct _ReaderRequestStepMsg *)Msg_v; @@ -2670,8 +2506,7 @@ void CP_ReaderRequestStepHandler(CManager cm, CMConnection conn, void *Msg_v, "Reader Request Step message received " "for Stream %p.\n", CP_WSR_Stream); - if (CP_WSR_Stream->ParentStream->ConfigParams->CPCommPattern == - SstCPCommPeer) + if (CP_WSR_Stream->ParentStream->ConfigParams->CPCommPattern == SstCPCommPeer) { assert(0); } @@ -2689,10 +2524,9 @@ void CP_ReaderRequestStepHandler(CManager cm, CMConnection conn, void *Msg_v, while (List) { size_t NextTS = Stream->LastDemandTimestep + 1; - CP_verbose( - Stream, TraceVerbose, - "In RequestStepHandler, trying to send TS %ld, examining TS %ld\n", - NextTS, List->Timestep); + CP_verbose(Stream, TraceVerbose, + "In RequestStepHandler, trying to send TS %ld, examining TS %ld\n", NextTS, + List->Timestep); if (CP_WSR_Stream->ReaderStatus != Established) { break; /* break out of while if we've fallen out of established @@ -2716,8 +2550,7 @@ void CP_ReaderRequestStepHandler(CManager cm, CMConnection conn, void *Msg_v, NextTS, List->ReferenceCount); Stream->LastDemandTimestep = List->Timestep; - SendTimestepEntryToSingleReader(Stream, List, CP_WSR_Stream, - RequestingReader); + SendTimestepEntryToSingleReader(Stream, List, CP_WSR_Stream, RequestingReader); if (Stream->LastDemandTimestep == Stream->CloseTimestepCount) { /* send if all timesteps have been send OnDemand */ @@ -2729,8 +2562,7 @@ void CP_ReaderRequestStepHandler(CManager cm, CMConnection conn, void *Msg_v, List = List->Next; } - CP_verbose(Stream, TraceVerbose, - "In RequestStepHandler, queueing request\n"); + CP_verbose(Stream, TraceVerbose, "In RequestStepHandler, queueing request\n"); assert(RequestingReader != -1); StepRequest Request = calloc(sizeof(*Request), 1); Request->RequestingReader = RequestingReader; @@ -2748,9 +2580,8 @@ void CP_ReaderRequestStepHandler(CManager cm, CMConnection conn, void *Msg_v, STREAM_MUTEX_UNLOCK(CP_WSR_Stream->ParentStream); } -extern void CP_ReleaseTimestepHandler(CManager cm, CMConnection conn, - void *Msg_v, void *client_data, - attr_list attrs) +extern void CP_ReleaseTimestepHandler(CManager cm, CMConnection conn, void *Msg_v, + void *client_data, attr_list attrs) { PERFSTUBS_TIMER_START_FUNC(timer); struct _ReleaseTimestepMsg *Msg = (struct _ReleaseTimestepMsg *)Msg_v; @@ -2780,17 +2611,14 @@ extern void CP_ReleaseTimestepHandler(CManager cm, CMConnection conn, Msg->Timestep, ReaderNum); /* decrement the reference count for the released timestep */ - CP_verbose(ParentStream, TraceVerbose, - "Got the lock in release timestep\n"); + CP_verbose(ParentStream, TraceVerbose, "Got the lock in release timestep\n"); Reader->LastReleasedTimestep = Msg->Timestep; - if ((ParentStream->Rank == 0) && - (ParentStream->ConfigParams->CPCommPattern == SstCPCommMin)) - { - ParentStream->ReleaseList = realloc( - ParentStream->ReleaseList, sizeof(ParentStream->ReleaseList[0]) * - (ParentStream->ReleaseCount + 1)); - ParentStream->ReleaseList[ParentStream->ReleaseCount].Timestep = - Msg->Timestep; + if ((ParentStream->Rank == 0) && (ParentStream->ConfigParams->CPCommPattern == SstCPCommMin)) + { + ParentStream->ReleaseList = + realloc(ParentStream->ReleaseList, + sizeof(ParentStream->ReleaseList[0]) * (ParentStream->ReleaseCount + 1)); + ParentStream->ReleaseList[ParentStream->ReleaseCount].Timestep = Msg->Timestep; ParentStream->ReleaseList[ParentStream->ReleaseCount].Reader = Reader; ParentStream->ReleaseCount++; } @@ -2800,15 +2628,13 @@ extern void CP_ReleaseTimestepHandler(CManager cm, CMConnection conn, QueueMaintenance(ParentStream); Reader->OldestUnreleasedTimestep = Msg->Timestep + 1; STREAM_CONDITION_SIGNAL(ParentStream); - CP_verbose(ParentStream, TraceVerbose, - "Releasing the lock in release timestep\n"); + CP_verbose(ParentStream, TraceVerbose, "Releasing the lock in release timestep\n"); STREAM_MUTEX_UNLOCK(ParentStream); PERFSTUBS_TIMER_STOP_FUNC(timer); } -extern void CP_LockReaderDefinitionsHandler(CManager cm, CMConnection conn, - void *Msg_v, void *client_data, - attr_list attrs) +extern void CP_LockReaderDefinitionsHandler(CManager cm, CMConnection conn, void *Msg_v, + void *client_data, attr_list attrs) { PERFSTUBS_TIMER_START_FUNC(timer); struct _ReleaseTimestepMsg *Msg = (struct _ReleaseTimestepMsg *)Msg_v; diff --git a/source/adios2/toolkit/sst/cp/ffs_marshal.c b/source/adios2/toolkit/sst/cp/ffs_marshal.c index 5b8b11034a..eeeed2db20 100644 --- a/source/adios2/toolkit/sst/cp/ffs_marshal.c +++ b/source/adios2/toolkit/sst/cp/ffs_marshal.c @@ -40,16 +40,14 @@ FMField dcomplex_field_list[] = { static char *ConcatName(const char *base_name, const char *postfix) { - char *Ret = - malloc(strlen("SST_") + strlen(base_name) + strlen(postfix) + 1); + char *Ret = malloc(strlen("SST_") + strlen(base_name) + strlen(postfix) + 1); strcpy(Ret, "SST_"); strcat(Ret, base_name); strcat(Ret, postfix); return Ret; } -static char *BuildVarName(const char *base_name, const int type, - const int element_size) +static char *BuildVarName(const char *base_name, const int type, const int element_size) { int Len = strlen(base_name) + 2 + strlen("SST_") + 16; char *Ret = malloc(Len); @@ -58,8 +56,7 @@ static char *BuildVarName(const char *base_name, const int type, return Ret; } -static void BreakdownVarName(const char *Name, char **base_name_p, int *type_p, - int *element_size_p) +static void BreakdownVarName(const char *Name, char **base_name_p, int *type_p, int *element_size_p) { int Type; int ElementSize; @@ -70,8 +67,7 @@ static void BreakdownVarName(const char *Name, char **base_name_p, int *type_p, *base_name_p = strdup(NameStart); } -static char *BuildArrayDimsName(const char *base_name, const int type, - const int element_size) +static char *BuildArrayDimsName(const char *base_name, const int type, const int element_size) { int Len = strlen(base_name) + 3 + strlen("SST_") + 16; char *Ret = malloc(Len); @@ -81,8 +77,7 @@ static char *BuildArrayDimsName(const char *base_name, const int type, return Ret; } -static char *BuildArrayDBCountName(const char *base_name, const int type, - const int element_size) +static char *BuildArrayDBCountName(const char *base_name, const int type, const int element_size) { int Len = strlen(base_name) + 3 + strlen("SST_") + 16; char *Ret = malloc(Len); @@ -92,8 +87,8 @@ static char *BuildArrayDBCountName(const char *base_name, const int type, return Ret; } -static void BreakdownArrayName(const char *Name, char **base_name_p, - int *type_p, int *element_size_p) +static void BreakdownArrayName(const char *Name, char **base_name_p, int *type_p, + int *element_size_p) { int Type; int ElementSize; @@ -178,8 +173,7 @@ static int TranslateFFSType2ADIOS(const char *Type, int size) { return Float; } - else if ((sizeof(long double) != sizeof(double)) && - (size == sizeof(long double))) + else if ((sizeof(long double) != sizeof(double)) && (size == sizeof(long double))) { return Double; } @@ -207,11 +201,9 @@ static void RecalcMarshalStorageSize(SstStream Stream) FMFieldList LastDataField; size_t NewDataSize; LastDataField = &Info->DataFields[Info->DataFieldCount - 1]; - NewDataSize = - (LastDataField->field_offset + LastDataField->field_size + 7) & ~7; + NewDataSize = (LastDataField->field_offset + LastDataField->field_size + 7) & ~7; Stream->D = realloc(Stream->D, NewDataSize + 8); - memset((char *)(Stream->D) + Stream->DataSize, 0, - NewDataSize - Stream->DataSize); + memset((char *)(Stream->D) + Stream->DataSize, 0, NewDataSize - Stream->DataSize); Stream->DataSize = NewDataSize; } if (Info->MetaFieldCount) @@ -219,11 +211,9 @@ static void RecalcMarshalStorageSize(SstStream Stream) FMFieldList LastMetaField; size_t NewMetaSize; LastMetaField = &Info->MetaFields[Info->MetaFieldCount - 1]; - NewMetaSize = - (LastMetaField->field_offset + LastMetaField->field_size + 7) & ~7; + NewMetaSize = (LastMetaField->field_offset + LastMetaField->field_size + 7) & ~7; Stream->M = realloc(Stream->M, NewMetaSize + 8); - memset((char *)(Stream->M) + Stream->MetadataSize, 0, - NewMetaSize - Stream->MetadataSize); + memset((char *)(Stream->M) + Stream->MetadataSize, 0, NewMetaSize - Stream->MetadataSize); Stream->MetadataSize = NewMetaSize; } } @@ -235,21 +225,18 @@ static void RecalcAttributeStorageSize(SstStream Stream) { FMFieldList LastAttributeField; size_t NewAttributeSize; - LastAttributeField = - &Info->AttributeFields[Info->AttributeFieldCount - 1]; - NewAttributeSize = (LastAttributeField->field_offset + - LastAttributeField->field_size + 7) & - ~7; - Info->AttributeData = - realloc(Info->AttributeData, NewAttributeSize + 8); + LastAttributeField = &Info->AttributeFields[Info->AttributeFieldCount - 1]; + NewAttributeSize = + (LastAttributeField->field_offset + LastAttributeField->field_size + 7) & ~7; + Info->AttributeData = realloc(Info->AttributeData, NewAttributeSize + 8); memset((char *)(Info->AttributeData) + Info->AttributeSize, 0, NewAttributeSize - Info->AttributeSize); Info->AttributeSize = NewAttributeSize; } } -static void AddSimpleField(FMFieldList *FieldP, int *CountP, const char *Name, - const char *Type, int ElementSize) +static void AddSimpleField(FMFieldList *FieldP, int *CountP, const char *Name, const char *Type, + int ElementSize) { int Offset = 0; FMFieldList Field; @@ -263,10 +250,8 @@ static void AddSimpleField(FMFieldList *FieldP, int *CountP, const char *Name, // really a pointer PriorFieldSize = sizeof(void *); } - Offset = - ((PriorField->field_offset + PriorFieldSize + ElementSize - 1) / - ElementSize) * - ElementSize; + Offset = ((PriorField->field_offset + PriorFieldSize + ElementSize - 1) / ElementSize) * + ElementSize; } if (*FieldP) *FieldP = realloc(*FieldP, (*CountP + 2) * sizeof((*FieldP)[0])); @@ -286,34 +271,32 @@ static void AddSimpleField(FMFieldList *FieldP, int *CountP, const char *Name, Field->field_offset = 0; } -static void AddField(FMFieldList *FieldP, int *CountP, const char *Name, - const int Type, int ElementSize) +static void AddField(FMFieldList *FieldP, int *CountP, const char *Name, const int Type, + int ElementSize) { char *TransType = TranslateADIOS2Type2FFS(Type); AddSimpleField(FieldP, CountP, Name, TransType, ElementSize); free(TransType); } -static void AddFixedArrayField(FMFieldList *FieldP, int *CountP, - const char *Name, const int Type, +static void AddFixedArrayField(FMFieldList *FieldP, int *CountP, const char *Name, const int Type, int ElementSize, int DimCount) { const char *TransType = TranslateADIOS2Type2FFS(Type); char *TypeWithArray = malloc(strlen(TransType) + 16); - snprintf(TypeWithArray, strlen(TransType) + 16, "*(%s[%d])", TransType, - DimCount); + snprintf(TypeWithArray, strlen(TransType) + 16, "*(%s[%d])", TransType, DimCount); free((void *)TransType); AddSimpleField(FieldP, CountP, Name, TypeWithArray, sizeof(void *)); free(TypeWithArray); (*FieldP)[*CountP - 1].field_size = ElementSize; } -static void AddVarArrayField(FMFieldList *FieldP, int *CountP, const char *Name, - const int Type, int ElementSize, char *SizeField) +static void AddVarArrayField(FMFieldList *FieldP, int *CountP, const char *Name, const int Type, + int ElementSize, char *SizeField) { char *TransType = TranslateADIOS2Type2FFS(Type); char *TypeWithArray = malloc(strlen(TransType) + strlen(SizeField) + 8); - snprintf(TypeWithArray, strlen(TransType) + strlen(SizeField) + 8, "%s[%s]", - TransType, SizeField); + snprintf(TypeWithArray, strlen(TransType) + strlen(SizeField) + 8, "%s[%s]", TransType, + SizeField); free(TransType); AddSimpleField(FieldP, CountP, Name, TypeWithArray, sizeof(void *)); free(TypeWithArray); @@ -331,8 +314,7 @@ static int FFSBitfieldTest(struct FFSMetadataInfoStruct *MBase, int Bit); static void InitMarshalData(SstStream Stream) { - struct FFSWriterMarshalBase *Info = - malloc(sizeof(struct FFSWriterMarshalBase)); + struct FFSWriterMarshalBase *Info = malloc(sizeof(struct FFSWriterMarshalBase)); struct FFSMetadataInfoStruct *MBase; memset(Info, 0, sizeof(*Info)); @@ -344,12 +326,12 @@ static void InitMarshalData(SstStream Stream) Info->DataFieldCount = 0; Info->DataFields = NULL; Info->LocalFMContext = create_local_FMcontext(); - AddSimpleField(&Info->MetaFields, &Info->MetaFieldCount, "BitFieldCount", - "integer", sizeof(size_t)); - AddSimpleField(&Info->MetaFields, &Info->MetaFieldCount, "BitField", - "integer[BitFieldCount]", sizeof(size_t)); - AddSimpleField(&Info->MetaFields, &Info->MetaFieldCount, "DataBlockSize", - "integer", sizeof(size_t)); + AddSimpleField(&Info->MetaFields, &Info->MetaFieldCount, "BitFieldCount", "integer", + sizeof(size_t)); + AddSimpleField(&Info->MetaFields, &Info->MetaFieldCount, "BitField", "integer[BitFieldCount]", + sizeof(size_t)); + AddSimpleField(&Info->MetaFields, &Info->MetaFieldCount, "DataBlockSize", "integer", + sizeof(size_t)); RecalcMarshalStorageSize(Stream); MBase = Stream->M; MBase->BitFieldCount = 0; @@ -442,18 +424,15 @@ extern void FFSFreeMarshalData(SstStream Stream) #define ZFPcompressionPossible(Type, DimCount) ((void)Type, 0) #endif -static FFSWriterRec CreateWriterRec(SstStream Stream, void *Variable, - const char *Name, int Type, size_t ElemSize, - size_t DimCount) +static FFSWriterRec CreateWriterRec(SstStream Stream, void *Variable, const char *Name, int Type, + size_t ElemSize, size_t DimCount) { if (!Stream->WriterMarshalData) { InitMarshalData(Stream); } - struct FFSWriterMarshalBase *Info = - (struct FFSWriterMarshalBase *)Stream->WriterMarshalData; - Info->RecList = - realloc(Info->RecList, (Info->RecCount + 1) * sizeof(Info->RecList[0])); + struct FFSWriterMarshalBase *Info = (struct FFSWriterMarshalBase *)Stream->WriterMarshalData; + Info->RecList = realloc(Info->RecList, (Info->RecCount + 1) * sizeof(Info->RecList[0])); FFSWriterRec Rec = &Info->RecList[Info->RecCount]; Rec->Key = Variable; Rec->FieldID = Info->RecCount; @@ -463,12 +442,10 @@ static FFSWriterRec CreateWriterRec(SstStream Stream, void *Variable, { // simple field, only add base value FMField to metadata char *SstName = ConcatName(Name, ""); - AddField(&Info->MetaFields, &Info->MetaFieldCount, SstName, Type, - ElemSize); + AddField(&Info->MetaFields, &Info->MetaFieldCount, SstName, Type, ElemSize); free(SstName); RecalcMarshalStorageSize(Stream); - Rec->MetaOffset = - Info->MetaFields[Info->MetaFieldCount - 1].field_offset; + Rec->MetaOffset = Info->MetaFields[Info->MetaFieldCount - 1].field_offset; Rec->DataOffset = (size_t)-1; // Changing the formats renders these invalid Info->MetaFormat = NULL; @@ -479,22 +456,19 @@ static FFSWriterRec CreateWriterRec(SstStream Stream, void *Variable, // and Offsets matching _MetaArrayRec char *ArrayName = BuildArrayDimsName(Name, Type, ElemSize); char *ArrayDBCount = BuildArrayDBCountName(Name, Type, ElemSize); - AddField(&Info->MetaFields, &Info->MetaFieldCount, ArrayName, Int64, - sizeof(size_t)); + AddField(&Info->MetaFields, &Info->MetaFieldCount, ArrayName, Int64, sizeof(size_t)); free(ArrayName); - Rec->MetaOffset = - Info->MetaFields[Info->MetaFieldCount - 1].field_offset; + Rec->MetaOffset = Info->MetaFields[Info->MetaFieldCount - 1].field_offset; char *ShapeName = ConcatName(Name, "Shape"); char *CountName = ConcatName(Name, "Count"); char *OffsetsName = ConcatName(Name, "Offsets"); - AddField(&Info->MetaFields, &Info->MetaFieldCount, ArrayDBCount, Int64, - sizeof(size_t)); - AddFixedArrayField(&Info->MetaFields, &Info->MetaFieldCount, ShapeName, - Int64, sizeof(size_t), DimCount); - AddVarArrayField(&Info->MetaFields, &Info->MetaFieldCount, CountName, - Int64, sizeof(size_t), ArrayDBCount); - AddVarArrayField(&Info->MetaFields, &Info->MetaFieldCount, OffsetsName, - Int64, sizeof(size_t), ArrayDBCount); + AddField(&Info->MetaFields, &Info->MetaFieldCount, ArrayDBCount, Int64, sizeof(size_t)); + AddFixedArrayField(&Info->MetaFields, &Info->MetaFieldCount, ShapeName, Int64, + sizeof(size_t), DimCount); + AddVarArrayField(&Info->MetaFields, &Info->MetaFieldCount, CountName, Int64, sizeof(size_t), + ArrayDBCount); + AddVarArrayField(&Info->MetaFields, &Info->MetaFieldCount, OffsetsName, Int64, + sizeof(size_t), ArrayDBCount); free(ArrayDBCount); free(ShapeName); free(CountName); @@ -509,13 +483,11 @@ static FFSWriterRec CreateWriterRec(SstStream Stream, void *Variable, } // To Data, add FMFields for ElemCount and Array matching _ArrayRec char *ElemCountName = ConcatName(Name, "ElemCount"); - AddField(&Info->DataFields, &Info->DataFieldCount, ElemCountName, Int64, - sizeof(size_t)); - Rec->DataOffset = - Info->DataFields[Info->DataFieldCount - 1].field_offset; + AddField(&Info->DataFields, &Info->DataFieldCount, ElemCountName, Int64, sizeof(size_t)); + Rec->DataOffset = Info->DataFields[Info->DataFieldCount - 1].field_offset; char *SstName = ConcatName(Name, ""); - AddVarArrayField(&Info->DataFields, &Info->DataFieldCount, SstName, - Type, ElemSize, ElemCountName); + AddVarArrayField(&Info->DataFields, &Info->DataFieldCount, SstName, Type, ElemSize, + ElemCountName); free(SstName); free(ElemCountName); RecalcMarshalStorageSize(Stream); @@ -567,10 +539,7 @@ typedef struct _FFSTimestepInfo * locking stragegies. To suppress TSAN errors, we're telling TSAN to * ignore the free. */ -static inline void NO_SANITIZE_THREAD no_tsan_free_FFSBuffer(FFSBuffer buf) -{ - free_FFSBuffer(buf); -} +static inline void NO_SANITIZE_THREAD no_tsan_free_FFSBuffer(FFSBuffer buf) { free_FFSBuffer(buf); } static void FreeTSInfo(void *ClientData) { @@ -582,10 +551,7 @@ static void FreeTSInfo(void *ClientData) free(TSInfo); } -static void FreeAttrInfo(void *ClientData) -{ - free_FFSBuffer((FFSBuffer)ClientData); -} +static void FreeAttrInfo(void *ClientData) { free_FFSBuffer((FFSBuffer)ClientData); } static size_t *CopyDims(const size_t Count, const size_t *Vals) { @@ -594,8 +560,8 @@ static size_t *CopyDims(const size_t Count, const size_t *Vals) return Ret; } -static size_t *AppendDims(size_t *OldDims, const size_t OldCount, - const size_t Count, const size_t *Vals) +static size_t *AppendDims(size_t *OldDims, const size_t OldCount, const size_t Count, + const size_t *Vals) { size_t *Ret = realloc(OldDims, (OldCount + Count) * sizeof(Ret[0])); memcpy(Ret + OldCount, Vals, Count * sizeof(Ret[0])); @@ -664,31 +630,21 @@ static FFSVarRec LookupVarByName(SstStream Stream, const char *Name) static FFSVarRec CreateVarRec(SstStream Stream, const char *ArrayName) { struct FFSReaderMarshalBase *Info = Stream->ReaderMarshalData; - Info->VarList = - realloc(Info->VarList, sizeof(Info->VarList[0]) * (Info->VarCount + 1)); + Info->VarList = realloc(Info->VarList, sizeof(Info->VarList[0]) * (Info->VarCount + 1)); FFSVarRec Ret = calloc(1, sizeof(struct FFSVarRec)); Ret->VarName = strdup(ArrayName); - Ret->PerWriterMetaFieldOffset = - calloc(sizeof(size_t), Stream->WriterCohortSize); + Ret->PerWriterMetaFieldOffset = calloc(sizeof(size_t), Stream->WriterCohortSize); Ret->PerWriterStart = calloc(sizeof(size_t *), Stream->WriterCohortSize); - Ret->PerWriterBlockStart = - calloc(sizeof(size_t *), Stream->WriterCohortSize); - Ret->PerWriterBlockCount = - calloc(sizeof(size_t *), Stream->WriterCohortSize); + Ret->PerWriterBlockStart = calloc(sizeof(size_t *), Stream->WriterCohortSize); + Ret->PerWriterBlockCount = calloc(sizeof(size_t *), Stream->WriterCohortSize); Ret->PerWriterCounts = calloc(sizeof(size_t *), Stream->WriterCohortSize); - Ret->PerWriterIncomingData = - calloc(sizeof(void *), Stream->WriterCohortSize); - Ret->PerWriterIncomingSize = - calloc(sizeof(size_t), Stream->WriterCohortSize); + Ret->PerWriterIncomingData = calloc(sizeof(void *), Stream->WriterCohortSize); + Ret->PerWriterIncomingSize = calloc(sizeof(size_t), Stream->WriterCohortSize); Info->VarList[Info->VarCount++] = Ret; return Ret; } -extern int SstFFSWriterBeginStep(SstStream Stream, int mode, - const float timeout_sec) -{ - return 0; -} +extern int SstFFSWriterBeginStep(SstStream Stream, int mode, const float timeout_sec) { return 0; } /* * This code initializes upcall pointers during stream creation, @@ -696,11 +652,12 @@ extern int SstFFSWriterBeginStep(SstStream Stream, int mode, * The serialized init-then-use pattern is not a real TSAN problem, * so ignore this. */ -void NO_SANITIZE_THREAD SstReaderInitFFSCallback( - SstStream Stream, void *Reader, VarSetupUpcallFunc VarCallback, - ArraySetupUpcallFunc ArrayCallback, - MinArraySetupUpcallFunc MinArrayCallback, AttrSetupUpcallFunc AttrCallback, - ArrayBlocksInfoUpcallFunc BlocksInfoCallback) +void NO_SANITIZE_THREAD SstReaderInitFFSCallback(SstStream Stream, void *Reader, + VarSetupUpcallFunc VarCallback, + ArraySetupUpcallFunc ArrayCallback, + MinArraySetupUpcallFunc MinArrayCallback, + AttrSetupUpcallFunc AttrCallback, + ArrayBlocksInfoUpcallFunc BlocksInfoCallback) { Stream->VarSetupUpcall = VarCallback; Stream->ArraySetupUpcall = ArrayCallback; @@ -710,9 +667,8 @@ void NO_SANITIZE_THREAD SstReaderInitFFSCallback( Stream->SetupUpcallReader = Reader; } -extern int SstFFSGetDeferred(SstStream Stream, void *Variable, const char *Name, - size_t DimCount, const size_t *Start, - const size_t *Count, void *Data) +extern int SstFFSGetDeferred(SstStream Stream, void *Variable, const char *Name, size_t DimCount, + const size_t *Start, const size_t *Count, void *Data) { struct FFSReaderMarshalBase *Info = Stream->ReaderMarshalData; int GetFromWriter = 0; @@ -722,16 +678,14 @@ extern int SstFFSGetDeferred(SstStream Stream, void *Variable, const char *Name, // Data area if (DimCount == 0) { - void *IncomingDataBase = - ((char *)Info->MetadataBaseAddrs[GetFromWriter]) + - Var->PerWriterMetaFieldOffset[GetFromWriter]; + void *IncomingDataBase = ((char *)Info->MetadataBaseAddrs[GetFromWriter]) + + Var->PerWriterMetaFieldOffset[GetFromWriter]; memcpy(Data, IncomingDataBase, Var->ElementSize); return 0; // No Sync needed } else { - CP_verbose(Stream, TraceVerbose, - "Get request, Name %s, Start %zu, Count %zu\n", Name, + CP_verbose(Stream, TraceVerbose, "Get request, Name %s, Start %zu, Count %zu\n", Name, Start[0], Count[0]); // Build request structure and enter it into requests list FFSArrayRequest Req = malloc(sizeof(*Req)); @@ -753,37 +707,33 @@ extern void *SstFFSGetBlocksInfo(SstStream Stream, void *Variable) { struct FFSReaderMarshalBase *Info = Stream->ReaderMarshalData; FFSVarRec VarRec = LookupVarByKey(Stream, Variable); - MetaArrayRec *meta_base = - (MetaArrayRec *)(((char *)Info->MetadataBaseAddrs[0]) + - VarRec->PerWriterMetaFieldOffset[0]); + MetaArrayRec *meta_base = (MetaArrayRec *)(((char *)Info->MetadataBaseAddrs[0]) + + VarRec->PerWriterMetaFieldOffset[0]); if (!Stream->MinArraySetupUpcall) return NULL; - void *Ret = Stream->MinArraySetupUpcall(Stream->SetupUpcallReader, - meta_base->Dims, meta_base->Shape); - for (int WriterRank = 0; WriterRank < Stream->WriterCohortSize; - WriterRank++) + void *Ret = + Stream->MinArraySetupUpcall(Stream->SetupUpcallReader, meta_base->Dims, meta_base->Shape); + for (int WriterRank = 0; WriterRank < Stream->WriterCohortSize; WriterRank++) { - meta_base = - (MetaArrayRec *)(((char *)Info->MetadataBaseAddrs[WriterRank]) + - VarRec->PerWriterMetaFieldOffset[WriterRank]); + meta_base = (MetaArrayRec *)(((char *)Info->MetadataBaseAddrs[WriterRank]) + + VarRec->PerWriterMetaFieldOffset[WriterRank]); for (int i = 0; i < VarRec->PerWriterBlockCount[WriterRank]; i++) { size_t *Offsets = NULL; if (meta_base->Offsets) Offsets = meta_base->Offsets + (i * meta_base->Dims); - Stream->ArrayBlocksInfoUpcall( - Stream->SetupUpcallReader, Ret, VarRec->Type, WriterRank, - meta_base->Dims, meta_base->Shape, Offsets, meta_base->Count); + Stream->ArrayBlocksInfoUpcall(Stream->SetupUpcallReader, Ret, VarRec->Type, WriterRank, + meta_base->Dims, meta_base->Shape, Offsets, + meta_base->Count); } } return Ret; } -extern int SstFFSGetLocalDeferred(SstStream Stream, void *Variable, - const char *Name, size_t DimCount, - const int BlockID, const size_t *Count, +extern int SstFFSGetLocalDeferred(SstStream Stream, void *Variable, const char *Name, + size_t DimCount, const int BlockID, const size_t *Count, void *Data) { struct FFSReaderMarshalBase *Info = Stream->ReaderMarshalData; @@ -794,9 +744,8 @@ extern int SstFFSGetLocalDeferred(SstStream Stream, void *Variable, // Data area if (DimCount == 0) { - void *IncomingDataBase = - ((char *)Info->MetadataBaseAddrs[GetFromWriter]) + - Var->PerWriterMetaFieldOffset[GetFromWriter]; + void *IncomingDataBase = ((char *)Info->MetadataBaseAddrs[GetFromWriter]) + + Var->PerWriterMetaFieldOffset[GetFromWriter]; memcpy(Data, IncomingDataBase, Var->ElementSize); return 0; // No Sync needed } @@ -809,9 +758,8 @@ extern int SstFFSGetLocalDeferred(SstStream Stream, void *Variable, Req->RequestType = Local; Req->BlockID = BlockID; // make a copy of Count request - CP_verbose(Stream, TraceVerbose, - "Get request local, Name %s, BlockID %d, Count %zu\n", Name, - BlockID, Count[0]); + CP_verbose(Stream, TraceVerbose, "Get request local, Name %s, BlockID %d, Count %zu\n", + Name, BlockID, Count[0]); Req->Count = malloc(sizeof(Count[0]) * Var->DimCount); memcpy(Req->Count, Count, sizeof(Count[0]) * Var->DimCount); Req->Data = Data; @@ -874,27 +822,23 @@ static void IssueReadRequests(SstStream Stream, FFSArrayRequest Reqs) Reqs = Reqs->Next; } - for (int WriterRank = 0; WriterRank < Stream->WriterCohortSize; - WriterRank++) + for (int WriterRank = 0; WriterRank < Stream->WriterCohortSize; WriterRank++) { if (Info->WriterInfo[WriterRank].Status == Needed) { - size_t DataSize = ((struct FFSMetadataInfoStruct *) - Info->MetadataBaseAddrs[WriterRank]) + size_t DataSize = ((struct FFSMetadataInfoStruct *)Info->MetadataBaseAddrs[WriterRank]) ->DataBlockSize; - void *DP_TimestepInfo = Mdata->DP_TimestepInfo - ? Mdata->DP_TimestepInfo[WriterRank] - : NULL; + void *DP_TimestepInfo = + Mdata->DP_TimestepInfo ? Mdata->DP_TimestepInfo[WriterRank] : NULL; Info->WriterInfo[WriterRank].RawBuffer = realloc(Info->WriterInfo[WriterRank].RawBuffer, DataSize); char tmpstr[256] = {0}; - snprintf(tmpstr, sizeof(tmpstr), "Request to rank %d, bytes", - WriterRank); + snprintf(tmpstr, sizeof(tmpstr), "Request to rank %d, bytes", WriterRank); PERFSTUBS_SAMPLE_COUNTER(tmpstr, (double)DataSize); - Info->WriterInfo[WriterRank].ReadHandle = SstReadRemoteMemory( - Stream, WriterRank, Stream->ReaderTimestep, 0, DataSize, - Info->WriterInfo[WriterRank].RawBuffer, DP_TimestepInfo); + Info->WriterInfo[WriterRank].ReadHandle = + SstReadRemoteMemory(Stream, WriterRank, Stream->ReaderTimestep, 0, DataSize, + Info->WriterInfo[WriterRank].RawBuffer, DP_TimestepInfo); Info->WriterInfo[WriterRank].Status = Requested; } } @@ -928,35 +872,30 @@ static void DecodeAndPrepareData(SstStream Stream, int Writer) void *BaseData; int DumpData = -1; - FFSformat = FFSTypeHandle_from_encode(Stream->ReaderFFSContext, - WriterInfo->RawBuffer); + FFSformat = FFSTypeHandle_from_encode(Stream->ReaderFFSContext, WriterInfo->RawBuffer); if (!FFShas_conversion(FFSformat)) { FMContext FMC = FMContext_from_FFS(Stream->ReaderFFSContext); FMFormat Format = FMformat_from_ID(FMC, WriterInfo->RawBuffer); - FMStructDescList List = - FMcopy_struct_list(format_list_of_FMFormat(Format)); + FMStructDescList List = FMcopy_struct_list(format_list_of_FMFormat(Format)); FMlocalize_structs(List); establish_conversion(Stream->ReaderFFSContext, FFSformat, List); FMfree_struct_list(List); } if (FFSdecode_in_place_possible(FFSformat)) { - FFSdecode_in_place(Stream->ReaderFFSContext, WriterInfo->RawBuffer, - &BaseData); + FFSdecode_in_place(Stream->ReaderFFSContext, WriterInfo->RawBuffer, &BaseData); } else { size_t DataSize = - ((struct FFSMetadataInfoStruct *)Info->MetadataBaseAddrs[Writer]) - ->DataBlockSize; - int DecodedLength = FFS_est_decode_length( - Stream->ReaderFFSContext, WriterInfo->RawBuffer, DataSize); + ((struct FFSMetadataInfoStruct *)Info->MetadataBaseAddrs[Writer])->DataBlockSize; + int DecodedLength = + FFS_est_decode_length(Stream->ReaderFFSContext, WriterInfo->RawBuffer, DataSize); BaseData = malloc(DecodedLength); FFSBuffer decode_buf = create_fixed_FFSBuffer(BaseData, DecodedLength); - FFSdecode_to_buffer(Stream->ReaderFFSContext, WriterInfo->RawBuffer, - decode_buf); + FFSdecode_to_buffer(Stream->ReaderFFSContext, WriterInfo->RawBuffer, decode_buf); } if (DumpData == -1) { @@ -964,8 +903,8 @@ static void DecodeAndPrepareData(SstStream Stream, int Writer) } if (DumpData) { - printf("\nOn Rank %d, IncomingDatablock from writer %d is %p :\n", - Stream->Rank, Writer, BaseData); + printf("\nOn Rank %d, IncomingDatablock from writer %d is %p :\n", Stream->Rank, Writer, + BaseData); FMdump_data(FMFormat_of_original(FFSformat), BaseData, 1024000); } Info->DataBaseAddrs[Writer] = BaseData; @@ -976,8 +915,7 @@ static void DecodeAndPrepareData(SstStream Stream, int Writer) int i = 0; while (FieldList[i].field_name) { - ArrayRec *data_base = - (ArrayRec *)((char *)BaseData + FieldList[i].field_offset); + ArrayRec *data_base = (ArrayRec *)((char *)BaseData + FieldList[i].field_offset); const char *ArrayName = FieldList[i + 1].field_name + 4; FFSVarRec VarRec = LookupVarByName(Stream, ArrayName); if (VarRec) @@ -997,8 +935,7 @@ static SstStatusValue WaitForReadRequests(SstStream Stream) { if (Info->WriterInfo[i].Status == Requested) { - SstStatusValue Result = - SstWaitForCompletion(Stream, Info->WriterInfo[i].ReadHandle); + SstStatusValue Result = SstWaitForCompletion(Stream, Info->WriterInfo[i].ReadHandle); if (Result == SstSuccess) { Info->WriterInfo[i].Status = Full; @@ -1019,8 +956,7 @@ static SstStatusValue WaitForReadRequests(SstStream Stream) } #ifdef NOTUSED -static void MapLocalToGlobalIndex(size_t Dims, const size_t *LocalIndex, - const size_t *LocalOffsets, +static void MapLocalToGlobalIndex(size_t Dims, const size_t *LocalIndex, const size_t *LocalOffsets, size_t *GlobalIndex) { for (int i = 0; i < Dims; i++) @@ -1031,8 +967,7 @@ static void MapLocalToGlobalIndex(size_t Dims, const size_t *LocalIndex, #endif static void MapGlobalToLocalIndex(size_t Dims, const size_t *GlobalIndex, - const size_t *LocalOffsets, - size_t *LocalIndex) + const size_t *LocalOffsets, size_t *LocalIndex) { for (int i = 0; i < Dims; i++) { @@ -1080,12 +1015,9 @@ static int FindOffsetCM(size_t Dims, const size_t *Size, const size_t *Index) * - OutData is the output, to be filled with the selection array. */ // Row major version -void ExtractSelectionFromPartialRM(int ElementSize, size_t Dims, - const size_t *GlobalDims, - const size_t *PartialOffsets, - const size_t *PartialCounts, - const size_t *SelectionOffsets, - const size_t *SelectionCounts, +void ExtractSelectionFromPartialRM(int ElementSize, size_t Dims, const size_t *GlobalDims, + const size_t *PartialOffsets, const size_t *PartialCounts, + const size_t *SelectionOffsets, const size_t *SelectionCounts, const char *InData, char *OutData) { size_t BlockSize; @@ -1103,8 +1035,7 @@ void ExtractSelectionFromPartialRM(int ElementSize, size_t Dims, int Dim; for (Dim = Dims - 1; Dim >= 0; Dim--) { - if ((GlobalDims[Dim] == PartialCounts[Dim]) && - (SelectionCounts[Dim] == PartialCounts[Dim])) + if ((GlobalDims[Dim] == PartialCounts[Dim]) && (SelectionCounts[Dim] == PartialCounts[Dim])) { BlockSize *= GlobalDims[Dim]; OperantDims--; /* last dimension doesn't matter, we got all and we @@ -1175,12 +1106,9 @@ static void ReverseDimensions(size_t *Dimensions, int count) } // Column-major version -void ExtractSelectionFromPartialCM(int ElementSize, size_t Dims, - const size_t *GlobalDims, - const size_t *PartialOffsets, - const size_t *PartialCounts, - const size_t *SelectionOffsets, - const size_t *SelectionCounts, +void ExtractSelectionFromPartialCM(int ElementSize, size_t Dims, const size_t *GlobalDims, + const size_t *PartialOffsets, const size_t *PartialCounts, + const size_t *SelectionOffsets, const size_t *SelectionCounts, const char *InData, char *OutData) { int BlockSize; @@ -1196,8 +1124,7 @@ void ExtractSelectionFromPartialCM(int ElementSize, size_t Dims, int Dim; for (Dim = 0; Dim < Dims; Dim++) { - if ((GlobalDims[Dim] == PartialCounts[Dim]) && - (SelectionCounts[Dim] == PartialCounts[Dim])) + if ((GlobalDims[Dim] == PartialCounts[Dim]) && (SelectionCounts[Dim] == PartialCounts[Dim])) { BlockSize *= GlobalDims[Dim]; OperantElementSize *= GlobalDims[Dim]; @@ -1273,8 +1200,7 @@ typedef struct _range_list struct _range_list *next; } *range_list; -range_list static OneDCoverage(size_t start, size_t end, - range_list uncovered_list) +range_list static OneDCoverage(size_t start, size_t end, range_list uncovered_list) { if (uncovered_list == NULL) return NULL; @@ -1370,8 +1296,7 @@ static void FillReadRequests(SstStream Stream, FFSArrayRequest Reqs) while (Reqs) { ImplementGapWarning(Stream, Reqs); - for (int WriterRank = 0; WriterRank < Stream->WriterCohortSize; - WriterRank++) + for (int WriterRank = 0; WriterRank < Stream->WriterCohortSize; WriterRank++) { if (NeedWriter(Reqs, WriterRank)) { @@ -1387,15 +1312,13 @@ static void FillReadRequests(SstStream Stream, FFSArrayRequest Reqs) size_t *SelOffsetFree = NULL; size_t *SelSize = Reqs->Count; int Type = Reqs->VarRec->Type; - void *IncomingData = - Reqs->VarRec->PerWriterIncomingData[WriterRank]; + void *IncomingData = Reqs->VarRec->PerWriterIncomingData[WriterRank]; int FreeIncoming = 0; if (Reqs->RequestType == Local) { int LocalBlockID = - Reqs->BlockID - - Reqs->VarRec->PerWriterBlockStart[WriterRank]; + Reqs->BlockID - Reqs->VarRec->PerWriterBlockStart[WriterRank]; size_t DataOffset = 0; int i; for (i = 0; i < LocalBlockID; i++) @@ -1410,8 +1333,7 @@ static void FillReadRequests(SstStream Stream, FFSArrayRequest Reqs) } RankOffset = calloc(DimCount, sizeof(RankOffset[0])); RankOffsetFree = RankOffset; - GlobalDimensions = - calloc(DimCount, sizeof(GlobalDimensions[0])); + GlobalDimensions = calloc(DimCount, sizeof(GlobalDimensions[0])); GlobalDimensionsFree = GlobalDimensions; if (SelOffset == NULL) { @@ -1424,8 +1346,7 @@ static void FillReadRequests(SstStream Stream, FFSArrayRequest Reqs) } IncomingData = (char *)IncomingData + DataOffset; } - if ((Stream->WriterConfigParams->CompressionMethod == - SstCompressZFP) && + if ((Stream->WriterConfigParams->CompressionMethod == SstCompressZFP) && ZFPcompressionPossible(Type, DimCount)) { #ifdef ADIOS2_HAVE_ZFP @@ -1433,25 +1354,23 @@ static void FillReadRequests(SstStream Stream, FFSArrayRequest Reqs) * replace old IncomingData with uncompressed, and free * afterwards */ - size_t IncomingSize = - Reqs->VarRec->PerWriterIncomingSize[WriterRank]; + size_t IncomingSize = Reqs->VarRec->PerWriterIncomingSize[WriterRank]; FreeIncoming = 1; - IncomingData = - FFS_ZFPDecompress(Stream, DimCount, Type, IncomingData, - IncomingSize, RankSize, NULL); + IncomingData = FFS_ZFPDecompress(Stream, DimCount, Type, IncomingData, + IncomingSize, RankSize, NULL); #endif } if (Stream->ConfigParams->IsRowMajor) { - ExtractSelectionFromPartialRM( - ElementSize, DimCount, GlobalDimensions, RankOffset, - RankSize, SelOffset, SelSize, IncomingData, Reqs->Data); + ExtractSelectionFromPartialRM(ElementSize, DimCount, GlobalDimensions, + RankOffset, RankSize, SelOffset, SelSize, + IncomingData, Reqs->Data); } else { - ExtractSelectionFromPartialCM( - ElementSize, DimCount, GlobalDimensions, RankOffset, - RankSize, SelOffset, SelSize, IncomingData, Reqs->Data); + ExtractSelectionFromPartialCM(ElementSize, DimCount, GlobalDimensions, + RankOffset, RankSize, SelOffset, SelSize, + IncomingData, Reqs->Data); } free(SelOffsetFree); free(GlobalDimensionsFree); @@ -1518,11 +1437,9 @@ extern void SstFFSWriterEndStep(SstStream Stream, size_t Timestep) {NULL, NULL, 0, NULL}}; struct_list[0].format_name = "MetaData"; struct_list[0].field_list = Info->MetaFields; - struct_list[0].struct_size = - FMstruct_size_field_list(Info->MetaFields, sizeof(char *)); + struct_list[0].struct_size = FMstruct_size_field_list(Info->MetaFields, sizeof(char *)); - FMFormat Format = - register_data_format(Info->LocalFMContext, &struct_list[0]); + FMFormat Format = register_data_format(Info->LocalFMContext, &struct_list[0]); Info->MetaFormat = Format; int size; Block->FormatServerRep = get_server_rep_FMformat(Format, &size); @@ -1542,10 +1459,8 @@ extern void SstFFSWriterEndStep(SstStream Stream, size_t Timestep) {NULL, NULL, 0, NULL}}; struct_list[0].format_name = "Data"; struct_list[0].field_list = Info->DataFields; - struct_list[0].struct_size = - FMstruct_size_field_list(Info->DataFields, sizeof(char *)); - FMFormat Format = - register_data_format(Info->LocalFMContext, &struct_list[0]); + struct_list[0].struct_size = FMstruct_size_field_list(Info->DataFields, sizeof(char *)); + FMFormat Format = register_data_format(Info->LocalFMContext, &struct_list[0]); Info->DataFormat = Format; int size; Block->FormatServerRep = get_server_rep_FMformat(Format, &size); @@ -1600,8 +1515,7 @@ extern void SstFFSWriterEndStep(SstStream Stream, size_t Timestep) struct FFSMetadataInfoStruct *MBase; if (Info->DataFormat) { - DataRec.block = - FFSencode(DataEncodeBuffer, Info->DataFormat, Stream->D, &DataSize); + DataRec.block = FFSencode(DataEncodeBuffer, Info->DataFormat, Stream->D, &DataSize); DataRec.DataSize = DataSize; } else @@ -1614,16 +1528,15 @@ extern void SstFFSWriterEndStep(SstStream Stream, size_t Timestep) MBase = Stream->M; MBase->DataBlockSize = DataSize; - MetaDataRec.block = - FFSencode(MetaEncodeBuffer, Info->MetaFormat, Stream->M, &MetaDataSize); + MetaDataRec.block = FFSencode(MetaEncodeBuffer, Info->MetaFormat, Stream->M, &MetaDataSize); MetaDataRec.DataSize = MetaDataSize; TSInfo->MetaEncodeBuffer = MetaEncodeBuffer; if (Info->AttributeFields) { AttributeEncodeBuffer = create_FFSBuffer(); - AttributeRec.block = FFSencode(AttributeEncodeBuffer, AttributeFormat, - Info->AttributeData, &AttributeSize); + AttributeRec.block = + FFSencode(AttributeEncodeBuffer, AttributeFormat, Info->AttributeData, &AttributeSize); AttributeRec.DataSize = AttributeSize; } else @@ -1663,9 +1576,8 @@ extern void SstFFSWriterEndStep(SstStream Stream, size_t Timestep) PERFSTUBS_TIMER_STOP(timer); - SstInternalProvideTimestep(Stream, &MetaDataRec, &DataRec, Timestep, - Formats, FreeTSInfo, TSInfo, &AttributeRec, - FreeAttrInfo, AttributeEncodeBuffer); + SstInternalProvideTimestep(Stream, &MetaDataRec, &DataRec, Timestep, Formats, FreeTSInfo, + TSInfo, &AttributeRec, FreeAttrInfo, AttributeEncodeBuffer); if (AttributeEncodeBuffer) { free_FFSBuffer(AttributeEncodeBuffer); @@ -1690,8 +1602,7 @@ static void LoadAttributes(SstStream Stream, TSMetadataMsg MetaData) { static int DumpMetadata = -1; Stream->AttrSetupUpcall(Stream->SetupUpcallReader, NULL, 0, NULL); - for (int WriterRank = 0; WriterRank < Stream->WriterCohortSize; - WriterRank++) + for (int WriterRank = 0; WriterRank < Stream->WriterCohortSize; WriterRank++) { FMFieldList FieldList; FMStructDescList FormatList; @@ -1701,16 +1612,13 @@ static void LoadAttributes(SstStream Stream, TSMetadataMsg MetaData) if (MetaData->AttributeData[WriterRank].DataSize == 0) return; - FFSformat = FFSTypeHandle_from_encode( - Stream->ReaderFFSContext, - MetaData->AttributeData[WriterRank].block); + FFSformat = FFSTypeHandle_from_encode(Stream->ReaderFFSContext, + MetaData->AttributeData[WriterRank].block); if (!FFShas_conversion(FFSformat)) { FMContext FMC = FMContext_from_FFS(Stream->ReaderFFSContext); - FMFormat Format = FMformat_from_ID( - FMC, MetaData->AttributeData[WriterRank].block); - FMStructDescList List = - FMcopy_struct_list(format_list_of_FMFormat(Format)); + FMFormat Format = FMformat_from_ID(FMC, MetaData->AttributeData[WriterRank].block); + FMStructDescList List = FMcopy_struct_list(format_list_of_FMFormat(Format)); FMlocalize_structs(List); establish_conversion(Stream->ReaderFFSContext, FFSformat, List); FMfree_struct_list(List); @@ -1718,21 +1626,17 @@ static void LoadAttributes(SstStream Stream, TSMetadataMsg MetaData) if (FFSdecode_in_place_possible(FFSformat)) { - FFSdecode_in_place(Stream->ReaderFFSContext, - MetaData->AttributeData[WriterRank].block, + FFSdecode_in_place(Stream->ReaderFFSContext, MetaData->AttributeData[WriterRank].block, &BaseData); } else { - int DecodedLength = FFS_est_decode_length( - Stream->ReaderFFSContext, - MetaData->AttributeData[WriterRank].block, - MetaData->AttributeData[WriterRank].DataSize); + int DecodedLength = FFS_est_decode_length(Stream->ReaderFFSContext, + MetaData->AttributeData[WriterRank].block, + MetaData->AttributeData[WriterRank].DataSize); BaseData = malloc(DecodedLength); - FFSBuffer decode_buf = - create_fixed_FFSBuffer(BaseData, DecodedLength); - FFSdecode_to_buffer(Stream->ReaderFFSContext, - MetaData->AttributeData[WriterRank].block, + FFSBuffer decode_buf = create_fixed_FFSBuffer(BaseData, DecodedLength); + FFSdecode_to_buffer(Stream->ReaderFFSContext, MetaData->AttributeData[WriterRank].block, decode_buf); } if (DumpMetadata == -1) @@ -1741,8 +1645,8 @@ static void LoadAttributes(SstStream Stream, TSMetadataMsg MetaData) } if (DumpMetadata && (Stream->Rank == 0)) { - printf("\nIncomingAttributeDatablock from WriterRank %d is %p :\n", - WriterRank, BaseData); + printf("\nIncomingAttributeDatablock from WriterRank %d is %p :\n", WriterRank, + BaseData); FMdump_data(FMFormat_of_original(FFSformat), BaseData, 1024000); printf("\n\n"); } @@ -1756,10 +1660,8 @@ static void LoadAttributes(SstStream Stream, TSMetadataMsg MetaData) int Type; int ElemSize; - BreakdownVarName(FieldList[i].field_name, &FieldName, &Type, - &ElemSize); - Stream->AttrSetupUpcall(Stream->SetupUpcallReader, FieldName, Type, - field_data); + BreakdownVarName(FieldList[i].field_name, &FieldName, &Type, &ElemSize); + Stream->AttrSetupUpcall(Stream->SetupUpcallReader, FieldName, Type, field_data); free(FieldName); i++; } @@ -1774,11 +1676,9 @@ static void LoadFormats(SstStream Stream, FFSFormatList Formats) char *FormatID = malloc(Entry->FormatIDRepLen); char *FormatServerRep = malloc(Entry->FormatServerRepLen); memcpy(FormatID, Entry->FormatIDRep, Entry->FormatIDRepLen); - memcpy(FormatServerRep, Entry->FormatServerRep, - Entry->FormatServerRepLen); - load_external_format_FMcontext( - FMContext_from_FFS(Stream->ReaderFFSContext), FormatID, - Entry->FormatIDRepLen, FormatServerRep); + memcpy(FormatServerRep, Entry->FormatServerRep, Entry->FormatServerRepLen); + load_external_format_FMcontext(FMContext_from_FFS(Stream->ReaderFFSContext), FormatID, + Entry->FormatIDRepLen, FormatServerRep); free(FormatID); Entry = Entry->Next; } @@ -1800,16 +1700,13 @@ extern void FFSClearTimestepData(SstStream Stream) if (Info->WriterInfo[i].RawBuffer) free(Info->WriterInfo[i].RawBuffer); } - memset(Info->WriterInfo, 0, - sizeof(Info->WriterInfo[0]) * Stream->WriterCohortSize); + memset(Info->WriterInfo, 0, sizeof(Info->WriterInfo[0]) * Stream->WriterCohortSize); memset(Info->MetadataBaseAddrs, 0, sizeof(Info->MetadataBaseAddrs[0]) * Stream->WriterCohortSize); memset(Info->MetadataFieldLists, 0, sizeof(Info->MetadataFieldLists[0]) * Stream->WriterCohortSize); - memset(Info->DataBaseAddrs, 0, - sizeof(Info->DataBaseAddrs[0]) * Stream->WriterCohortSize); - memset(Info->DataFieldLists, 0, - sizeof(Info->DataFieldLists[0]) * Stream->WriterCohortSize); + memset(Info->DataBaseAddrs, 0, sizeof(Info->DataBaseAddrs[0]) * Stream->WriterCohortSize); + memset(Info->DataFieldLists, 0, sizeof(Info->DataFieldLists[0]) * Stream->WriterCohortSize); for (i = 0; i < Info->VarCount; i++) { Info->VarList[i]->Variable = NULL; @@ -1823,8 +1720,7 @@ static struct ControlInfo *BuildControl(SstStream Stream, FMFormat Format) FMFieldList FieldList = FormatList[0].field_list; while (strncmp(FieldList->field_name, "BitField", 8) == 0) FieldList++; - while (FieldList->field_name && - (strncmp(FieldList->field_name, "DataBlockSize", 8) == 0)) + while (FieldList->field_name && (strncmp(FieldList->field_name, "DataBlockSize", 8) == 0)) FieldList++; int i = 0; int ControlCount = 0; @@ -1832,8 +1728,7 @@ static struct ControlInfo *BuildControl(SstStream Stream, FMFormat Format) ret->Format = Format; while (FieldList[i].field_name) { - ret = realloc(ret, - sizeof(*ret) + ControlCount * sizeof(struct ControlInfo)); + ret = realloc(ret, sizeof(*ret) + ControlCount * sizeof(struct ControlInfo)); struct ControlStruct *C = &(ret->Controls[ControlCount]); ControlCount++; @@ -1847,8 +1742,7 @@ static struct ControlInfo *BuildControl(SstStream Stream, FMFormat Format) FFSVarRec VarRec = NULL; int ElementSize; C->IsArray = 1; - BreakdownArrayName(FieldList[i].field_name, &ArrayName, &Type, - &ElementSize); + BreakdownArrayName(FieldList[i].field_name, &ArrayName, &Type, &ElementSize); // if (WriterRank != 0) // { VarRec = LookupVarByName(Stream, ArrayName); @@ -1873,8 +1767,7 @@ static struct ControlInfo *BuildControl(SstStream Stream, FMFormat Format) VarRec = LookupVarByName(Stream, FieldName); if (!VarRec) { - int Type = TranslateFFSType2ADIOS(FieldList[i].field_type, - FieldList[i].field_size); + int Type = TranslateFFSType2ADIOS(FieldList[i].field_type, FieldList[i].field_size); VarRec = CreateVarRec(Stream, FieldName); VarRec->DimCount = 0; C->Type = Type; @@ -1908,8 +1801,7 @@ static struct ControlInfo *GetPriorControl(SstStream Stream, FMFormat Format) return NULL; } -static void BuildVarList(SstStream Stream, TSMetadataMsg MetaData, - int WriterRank) +static void BuildVarList(SstStream Stream, TSMetadataMsg MetaData, int WriterRank) { FFSTypeHandle FFSformat; void *BaseData; @@ -1939,16 +1831,13 @@ static void BuildVarList(SstStream Stream, TSMetadataMsg MetaData, Info = malloc(sizeof(*Info)); memset(Info, 0, sizeof(*Info)); Stream->ReaderMarshalData = Info; - Info->WriterInfo = - calloc(sizeof(Info->WriterInfo[0]), Stream->WriterCohortSize); - Info->MetadataBaseAddrs = calloc(sizeof(Info->MetadataBaseAddrs[0]), - Stream->WriterCohortSize); - Info->MetadataFieldLists = calloc(sizeof(Info->MetadataFieldLists[0]), - Stream->WriterCohortSize); - Info->DataBaseAddrs = - calloc(sizeof(Info->DataBaseAddrs[0]), Stream->WriterCohortSize); - Info->DataFieldLists = - calloc(sizeof(Info->DataFieldLists[0]), Stream->WriterCohortSize); + Info->WriterInfo = calloc(sizeof(Info->WriterInfo[0]), Stream->WriterCohortSize); + Info->MetadataBaseAddrs = + calloc(sizeof(Info->MetadataBaseAddrs[0]), Stream->WriterCohortSize); + Info->MetadataFieldLists = + calloc(sizeof(Info->MetadataFieldLists[0]), Stream->WriterCohortSize); + Info->DataBaseAddrs = calloc(sizeof(Info->DataBaseAddrs[0]), Stream->WriterCohortSize); + Info->DataFieldLists = calloc(sizeof(Info->DataFieldLists[0]), Stream->WriterCohortSize); } if (!MetaData->Metadata[WriterRank].block) @@ -1958,16 +1847,14 @@ static void BuildVarList(SstStream Stream, TSMetadataMsg MetaData, "NULL for WriterRank = %d\n", WriterRank); } - FFSformat = FFSTypeHandle_from_encode(Stream->ReaderFFSContext, - MetaData->Metadata[WriterRank].block); + FFSformat = + FFSTypeHandle_from_encode(Stream->ReaderFFSContext, MetaData->Metadata[WriterRank].block); if (!FFShas_conversion(FFSformat)) { FMContext FMC = FMContext_from_FFS(Stream->ReaderFFSContext); - FMFormat Format = - FMformat_from_ID(FMC, MetaData->Metadata[WriterRank].block); - FMStructDescList List = - FMcopy_struct_list(format_list_of_FMFormat(Format)); + FMFormat Format = FMformat_from_ID(FMC, MetaData->Metadata[WriterRank].block); + FMStructDescList List = FMcopy_struct_list(format_list_of_FMFormat(Format)); FMlocalize_structs(List); establish_conversion(Stream->ReaderFFSContext, FFSformat, List); FMfree_struct_list(List); @@ -1975,17 +1862,17 @@ static void BuildVarList(SstStream Stream, TSMetadataMsg MetaData, if (FFSdecode_in_place_possible(FFSformat)) { - FFSdecode_in_place(Stream->ReaderFFSContext, - MetaData->Metadata[WriterRank].block, &BaseData); + FFSdecode_in_place(Stream->ReaderFFSContext, MetaData->Metadata[WriterRank].block, + &BaseData); } else { - int DecodedLength = FFS_est_decode_length( - Stream->ReaderFFSContext, MetaData->Metadata[WriterRank].block, - MetaData->Metadata[WriterRank].DataSize); + int DecodedLength = + FFS_est_decode_length(Stream->ReaderFFSContext, MetaData->Metadata[WriterRank].block, + MetaData->Metadata[WriterRank].DataSize); BaseData = malloc(DecodedLength); - FFSdecode_to_buffer(Stream->ReaderFFSContext, - MetaData->Metadata[WriterRank].block, BaseData); + FFSdecode_to_buffer(Stream->ReaderFFSContext, MetaData->Metadata[WriterRank].block, + BaseData); } if (DumpMetadata == -1) { @@ -1993,8 +1880,7 @@ static void BuildVarList(SstStream Stream, TSMetadataMsg MetaData, } if (DumpMetadata && (Stream->Rank == 0)) { - printf("\nIncomingMetadatablock from WriterRank %d is %p :\n", - WriterRank, BaseData); + printf("\nIncomingMetadatablock from WriterRank %d is %p :\n", WriterRank, BaseData); FMdump_data(FMFormat_of_original(FFSformat), BaseData, 1024000); printf("\n\n"); } @@ -2021,8 +1907,7 @@ static void BuildVarList(SstStream Stream, TSMetadataMsg MetaData, { MetaArrayRec *meta_base = field_data; if ((meta_base->Dims > 1) && - (Stream->WriterConfigParams->IsRowMajor != - Stream->ConfigParams->IsRowMajor)) + (Stream->WriterConfigParams->IsRowMajor != Stream->ConfigParams->IsRowMajor)) { /* if we're getting data from someone of the other array gender, * switcheroo */ @@ -2037,9 +1922,8 @@ static void BuildVarList(SstStream Stream, TSMetadataMsg MetaData, if (!VarRec->Variable) { VarRec->Variable = Stream->ArraySetupUpcall( - Stream->SetupUpcallReader, VarRec->VarName, VarRec->Type, - meta_base->Dims, meta_base->Shape, meta_base->Offsets, - meta_base->Count); + Stream->SetupUpcallReader, VarRec->VarName, VarRec->Type, meta_base->Dims, + meta_base->Shape, meta_base->Offsets, meta_base->Count); } VarRec->DimCount = meta_base->Dims; VarRec->PerWriterBlockCount[WriterRank] = @@ -2070,17 +1954,15 @@ static void BuildVarList(SstStream Stream, TSMetadataMsg MetaData, } if (!UseMin) { - for (int i = 0; i < VarRec->PerWriterBlockCount[WriterRank]; - i++) + for (int i = 0; i < VarRec->PerWriterBlockCount[WriterRank]; i++) { size_t *Offsets = NULL; if (meta_base->Offsets) Offsets = meta_base->Offsets + (i * meta_base->Dims); void *Variable = VarRec->Variable; - Stream->ArrayBlocksInfoUpcall( - Stream->SetupUpcallReader, Variable, VarRec->Type, - WriterRank, meta_base->Dims, meta_base->Shape, Offsets, - meta_base->Count); + Stream->ArrayBlocksInfoUpcall(Stream->SetupUpcallReader, Variable, VarRec->Type, + WriterRank, meta_base->Dims, meta_base->Shape, + Offsets, meta_base->Count); } } } @@ -2089,16 +1971,14 @@ static void BuildVarList(SstStream Stream, TSMetadataMsg MetaData, if (!VarRec->Variable) { VarRec->Variable = Stream->VarSetupUpcall( - Stream->SetupUpcallReader, VarRec->VarName, VarRec->Type, - field_data); + Stream->SetupUpcallReader, VarRec->VarName, VarRec->Type, field_data); } } VarRec->PerWriterMetaFieldOffset[WriterRank] = FieldOffset; } } -extern void FFSMarshalInstallPreciousMetadata(SstStream Stream, - TSMetadataMsg MetaData) +extern void FFSMarshalInstallPreciousMetadata(SstStream Stream, TSMetadataMsg MetaData) { if (!Stream->ReaderFFSContext) { @@ -2128,8 +2008,7 @@ static void FFSBitfieldSet(struct FFSMetadataInfoStruct *MBase, int Bit) int ElementBit = Bit % (sizeof(size_t) * 8); if (Element >= MBase->BitFieldCount) { - MBase->BitField = - realloc(MBase->BitField, sizeof(size_t) * (Element + 1)); + MBase->BitField = realloc(MBase->BitField, sizeof(size_t) * (Element + 1)); memset(MBase->BitField + MBase->BitFieldCount, 0, (Element - MBase->BitFieldCount + 1) * sizeof(size_t)); MBase->BitFieldCount = Element + 1; @@ -2143,14 +2022,12 @@ static int FFSBitfieldTest(struct FFSMetadataInfoStruct *MBase, int Bit) int ElementBit = Bit % (sizeof(size_t) * 8); if (Element >= MBase->BitFieldCount) { - MBase->BitField = - realloc(MBase->BitField, sizeof(size_t) * (Element + 1)); + MBase->BitField = realloc(MBase->BitField, sizeof(size_t) * (Element + 1)); memset(MBase->BitField + MBase->BitFieldCount, 0, (Element - MBase->BitFieldCount + 1) * sizeof(size_t)); MBase->BitFieldCount = Element + 1; } - return ((MBase->BitField[Element] & (1 << ElementBit)) == - (1 << ElementBit)); + return ((MBase->BitField[Element] & (1 << ElementBit)) == (1 << ElementBit)); } extern void SstFFSSetZFPParams(SstStream Stream, attr_list Attrs) @@ -2166,10 +2043,9 @@ extern void SstFFSSetZFPParams(SstStream Stream, attr_list Attrs) } /* GetDeferred calls return true if need later sync */ -extern void SstFFSMarshal(SstStream Stream, void *Variable, const char *Name, - const int Type, size_t ElemSize, size_t DimCount, - const size_t *Shape, const size_t *Count, - const size_t *Offsets, const void *Data) +extern void SstFFSMarshal(SstStream Stream, void *Variable, const char *Name, const int Type, + size_t ElemSize, size_t DimCount, const size_t *Shape, + const size_t *Count, const size_t *Offsets, const void *Data) { struct FFSMetadataInfoStruct *MBase; @@ -2190,10 +2066,8 @@ extern void SstFFSMarshal(SstStream Stream, void *Variable, const char *Name, } else { - MetaArrayRec *MetaEntry = - (MetaArrayRec *)((char *)(Stream->M) + Rec->MetaOffset); - ArrayRec *DataEntry = - (ArrayRec *)((char *)(Stream->D) + Rec->DataOffset); + MetaArrayRec *MetaEntry = (MetaArrayRec *)((char *)(Stream->M) + Rec->MetaOffset); + ArrayRec *DataEntry = (ArrayRec *)((char *)(Stream->D) + Rec->DataOffset); /* handle metadata */ MetaEntry->Dims = DimCount; @@ -2219,11 +2093,10 @@ extern void SstFFSMarshal(SstStream Stream, void *Variable, const char *Name, // Also assume Dims is always right and consistent, otherwise, bad // things MetaEntry->DBCount += DimCount; - MetaEntry->Count = - AppendDims(MetaEntry->Count, PreviousDBCount, DimCount, Count); + MetaEntry->Count = AppendDims(MetaEntry->Count, PreviousDBCount, DimCount, Count); if (Offsets) - MetaEntry->Offsets = AppendDims( - MetaEntry->Offsets, PreviousDBCount, DimCount, Offsets); + MetaEntry->Offsets = + AppendDims(MetaEntry->Offsets, PreviousDBCount, DimCount, Offsets); } if ((Stream->ConfigParams->CompressionMethod == SstCompressZFP) && @@ -2232,8 +2105,8 @@ extern void SstFFSMarshal(SstStream Stream, void *Variable, const char *Name, #ifdef ADIOS2_HAVE_ZFP /* this should never be true if ZFP is not available */ size_t ByteCount; - char *Output = FFS_ZFPCompress(Stream, Rec->DimCount, Rec->Type, - (void *)Data, Count, &ByteCount); + char *Output = + FFS_ZFPCompress(Stream, Rec->DimCount, Rec->Type, (void *)Data, Count, &ByteCount); DataEntry->ElemCount = ByteCount; DataEntry->Array = Output; #endif @@ -2254,20 +2127,17 @@ extern void SstFFSMarshal(SstStream Stream, void *Variable, const char *Name, size_t ElemCount = CalcSize(DimCount, Count); /* this is PutSync case, so we have to copy the data NOW */ DataEntry->Array = - realloc(DataEntry->Array, - (DataEntry->ElemCount + ElemCount) * ElemSize); - memcpy((char *)DataEntry->Array + - DataEntry->ElemCount * ElemSize, - Data, ElemCount * ElemSize); + realloc(DataEntry->Array, (DataEntry->ElemCount + ElemCount) * ElemSize); + memcpy((char *)DataEntry->Array + DataEntry->ElemCount * ElemSize, Data, + ElemCount * ElemSize); DataEntry->ElemCount += ElemCount; } } } } -extern void SstFFSMarshalAttribute(SstStream Stream, const char *Name, - const int Type, size_t ElemSize, - size_t ElemCount, const void *Data) +extern void SstFFSMarshalAttribute(SstStream Stream, const char *Name, const int Type, + size_t ElemSize, size_t ElemCount, const void *Data) { struct FFSWriterMarshalBase *Info; @@ -2285,14 +2155,11 @@ extern void SstFFSMarshalAttribute(SstStream Stream, const char *Name, { // simple field, only simple attribute name and value char *SstName = BuildVarName(Name, Type, ElemSize); - AddField(&Info->AttributeFields, &Info->AttributeFieldCount, SstName, - Type, ElemSize); + AddField(&Info->AttributeFields, &Info->AttributeFieldCount, SstName, Type, ElemSize); free(SstName); RecalcAttributeStorageSize(Stream); - int DataOffset = - Info->AttributeFields[Info->AttributeFieldCount - 1].field_offset; - memcpy((char *)(Info->AttributeData) + DataOffset, DataAddress, - ElemSize); + int DataOffset = Info->AttributeFields[Info->AttributeFieldCount - 1].field_offset; + memcpy((char *)(Info->AttributeData) + DataOffset, DataAddress, ElemSize); } else { diff --git a/source/adios2/toolkit/sst/cp/ffs_marshal.h b/source/adios2/toolkit/sst/cp/ffs_marshal.h index 46b15d68e4..9f6fc548b1 100644 --- a/source/adios2/toolkit/sst/cp/ffs_marshal.h +++ b/source/adios2/toolkit/sst/cp/ffs_marshal.h @@ -132,10 +132,8 @@ struct FFSReaderMarshalBase struct ControlInfo *ControlBlocks; }; -extern char *FFS_ZFPCompress(SstStream Stream, const size_t DimCount, int Type, - void *Data, const size_t *Count, - size_t *ByteCountP); -extern void *FFS_ZFPDecompress(SstStream Stream, const size_t DimCount, - int Type, void *bufferIn, const size_t sizeIn, - const size_t *Dimensions, attr_list Parameters); +extern char *FFS_ZFPCompress(SstStream Stream, const size_t DimCount, int Type, void *Data, + const size_t *Count, size_t *ByteCountP); +extern void *FFS_ZFPDecompress(SstStream Stream, const size_t DimCount, int Type, void *bufferIn, + const size_t sizeIn, const size_t *Dimensions, attr_list Parameters); extern int ZFPcompressionPossible(const int Type, const int DimCount); diff --git a/source/adios2/toolkit/sst/cp/ffs_zfp.c b/source/adios2/toolkit/sst/cp/ffs_zfp.c index 6f09688a46..55485e23b7 100644 --- a/source/adios2/toolkit/sst/cp/ffs_zfp.c +++ b/source/adios2/toolkit/sst/cp/ffs_zfp.c @@ -60,8 +60,7 @@ extern int ZFPcompressionPossible(const int Type, int DimCount) return ((GetZFPType(Type) != zfp_type_none) && (DimCount < 4)); } -static zfp_field *GetZFPField(void *Data, const size_t DimCount, int Type, - const size_t *Dimensions) +static zfp_field *GetZFPField(void *Data, const size_t DimCount, int Type, const size_t *Dimensions) { zfp_type zfpType = GetZFPType(Type); zfp_field *field = NULL; @@ -78,13 +77,10 @@ static zfp_field *GetZFPField(void *Data, const size_t DimCount, int Type, field = zfp_field_2d(Data, zfpType, Dimensions[0], Dimensions[1]); break; case 3: - field = zfp_field_3d(Data, zfpType, Dimensions[0], Dimensions[1], - Dimensions[2]); + field = zfp_field_3d(Data, zfpType, Dimensions[0], Dimensions[1], Dimensions[2]); break; default: - fprintf(stderr, - "ZFP Compression not supported on %ld dimensional data\n", - DimCount); + fprintf(stderr, "ZFP Compression not supported on %ld dimensional data\n", DimCount); exit(1); } return field; @@ -106,11 +102,9 @@ zfp_stream *GetZFPStream(const size_t DimCount, int Type, attr_list Parameters) ZFPRateAtom = attr_atom_from_string("ZFPRate"); ZFPPrecisionAtom = attr_atom_from_string("ZFPPrecision"); } - int hasTolerance = - get_double_attr(Parameters, ZFPToleranceAtom, &Tolerance); + int hasTolerance = get_double_attr(Parameters, ZFPToleranceAtom, &Tolerance); int hasRate = get_double_attr(Parameters, ZFPRateAtom, &Rate); - int hasPrecision = - get_double_attr(Parameters, ZFPPrecisionAtom, &Precision); + int hasPrecision = get_double_attr(Parameters, ZFPPrecisionAtom, &Precision); if (hasTolerance + hasRate + hasPrecision > 1) fprintf(stderr, "ERROR: zfp parameters Tolerance, " "Rate, Precision are mutually " @@ -134,9 +128,8 @@ zfp_stream *GetZFPStream(const size_t DimCount, int Type, attr_list Parameters) return zstream; } -extern char *FFS_ZFPCompress(SstStream Stream, const size_t DimCount, int Type, - void *Data, const size_t *Count, - size_t *ByteCountP) +extern char *FFS_ZFPCompress(SstStream Stream, const size_t DimCount, int Type, void *Data, + const size_t *Count, size_t *ByteCountP) { struct FFSWriterMarshalBase *Info = Stream->WriterMarshalData; void *bufferOut; @@ -157,9 +150,8 @@ extern char *FFS_ZFPCompress(SstStream Stream, const size_t DimCount, int Type, return bufferOut; } -void *FFS_ZFPDecompress(SstStream Stream, const size_t DimCount, int Type, - void *bufferIn, const size_t sizeIn, - const size_t *Dimensions, attr_list Parameters) +void *FFS_ZFPDecompress(SstStream Stream, const size_t DimCount, int Type, void *bufferIn, + const size_t sizeIn, const size_t *Dimensions, attr_list Parameters) { zfp_field *in_field = GetZFPField(bufferIn, DimCount, Type, Dimensions); zfp_stream *stream = GetZFPStream(DimCount, Type, NULL); diff --git a/source/adios2/toolkit/sst/dp/daos_dp.c b/source/adios2/toolkit/sst/dp/daos_dp.c index d44daf893a..6478093f7a 100644 --- a/source/adios2/toolkit/sst/dp/daos_dp.c +++ b/source/adios2/toolkit/sst/dp/daos_dp.c @@ -75,8 +75,7 @@ typedef struct _Daos_WSR_Stream int ReaderCohortSize; char *ReaderRequests; struct _DaosReaderContactInfo *ReaderContactInfo; - struct _DaosWriterContactInfo - *WriterContactInfo; /* included so we can free on destroy */ + struct _DaosWriterContactInfo *WriterContactInfo; /* included so we can free on destroy */ } *Daos_WSR_Stream; typedef struct _TimestepEntry @@ -136,23 +135,17 @@ typedef struct _DaosReadRequestMsg } *DaosReadRequestMsg; static FMField DaosReadRequestList[] = { - {"Timestep", "integer", sizeof(long), - FMOffset(DaosReadRequestMsg, Timestep)}, + {"Timestep", "integer", sizeof(long), FMOffset(DaosReadRequestMsg, Timestep)}, {"Offset", "integer", sizeof(size_t), FMOffset(DaosReadRequestMsg, Offset)}, {"Length", "integer", sizeof(size_t), FMOffset(DaosReadRequestMsg, Length)}, - {"WS_Stream", "integer", sizeof(void *), - FMOffset(DaosReadRequestMsg, WS_Stream)}, - {"RS_Stream", "integer", sizeof(void *), - FMOffset(DaosReadRequestMsg, RS_Stream)}, - {"RequestingRank", "integer", sizeof(int), - FMOffset(DaosReadRequestMsg, RequestingRank)}, - {"NotifyCondition", "integer", sizeof(int), - FMOffset(DaosReadRequestMsg, NotifyCondition)}, + {"WS_Stream", "integer", sizeof(void *), FMOffset(DaosReadRequestMsg, WS_Stream)}, + {"RS_Stream", "integer", sizeof(void *), FMOffset(DaosReadRequestMsg, RS_Stream)}, + {"RequestingRank", "integer", sizeof(int), FMOffset(DaosReadRequestMsg, RequestingRank)}, + {"NotifyCondition", "integer", sizeof(int), FMOffset(DaosReadRequestMsg, NotifyCondition)}, {NULL, NULL, 0, 0}}; static FMStructDescRec DaosReadRequestStructs[] = { - {"DaosReadRequest", DaosReadRequestList, sizeof(struct _DaosReadRequestMsg), - NULL}, + {"DaosReadRequest", DaosReadRequestList, sizeof(struct _DaosReadRequestMsg), NULL}, {NULL, NULL, 0, NULL}}; typedef struct _DaosReadReplyMsg @@ -166,33 +159,25 @@ typedef struct _DaosReadReplyMsg static FMField DaosReadReplyList[] = { {"Timestep", "integer", sizeof(long), FMOffset(DaosReadReplyMsg, Timestep)}, - {"RS_Stream", "integer", sizeof(void *), - FMOffset(DaosReadReplyMsg, RS_Stream)}, - {"DataLength", "integer", sizeof(size_t), - FMOffset(DaosReadReplyMsg, DataLength)}, - {"Data", "char[DataLength]", sizeof(char), - FMOffset(DaosReadReplyMsg, Data)}, - {"NotifyCondition", "integer", sizeof(int), - FMOffset(DaosReadReplyMsg, NotifyCondition)}, + {"RS_Stream", "integer", sizeof(void *), FMOffset(DaosReadReplyMsg, RS_Stream)}, + {"DataLength", "integer", sizeof(size_t), FMOffset(DaosReadReplyMsg, DataLength)}, + {"Data", "char[DataLength]", sizeof(char), FMOffset(DaosReadReplyMsg, Data)}, + {"NotifyCondition", "integer", sizeof(int), FMOffset(DaosReadReplyMsg, NotifyCondition)}, {NULL, NULL, 0, 0}}; static FMStructDescRec DaosReadReplyStructs[] = { - {"DaosReadReply", DaosReadReplyList, sizeof(struct _DaosReadReplyMsg), - NULL}, + {"DaosReadReply", DaosReadReplyList, sizeof(struct _DaosReadReplyMsg), NULL}, {NULL, NULL, 0, NULL}}; -static void DaosReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_Data, attr_list attrs); +static void DaosReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, + attr_list attrs); -static DP_RS_Stream DaosInitReader(CP_Services Svcs, void *CP_Stream, - void **ReaderContactInfoPtr, - struct _SstParams *Params, - attr_list WriterContactAttributes, +static DP_RS_Stream DaosInitReader(CP_Services Svcs, void *CP_Stream, void **ReaderContactInfoPtr, + struct _SstParams *Params, attr_list WriterContactAttributes, SstStats Stats) { Daos_RS_Stream Stream = malloc(sizeof(struct _Daos_RS_Stream)); - DaosReaderContactInfo Contact = - malloc(sizeof(struct _DaosReaderContactInfo)); + DaosReaderContactInfo Contact = malloc(sizeof(struct _DaosReaderContactInfo)); CManager cm = Svcs->getCManager(CP_Stream); char *DaosContactString; SMPI_Comm comm = Svcs->getMPIComm(CP_Stream); @@ -212,8 +197,7 @@ static DP_RS_Stream DaosInitReader(CP_Services Svcs, void *CP_Stream, SMPI_Comm_rank(comm, &Stream->Rank); - set_string_attr(ListenAttrs, attr_atom_from_string("CM_TRANSPORT"), - "sockets"); + set_string_attr(ListenAttrs, attr_atom_from_string("CM_TRANSPORT"), "sockets"); if (Params->DataInterface) { @@ -245,8 +229,8 @@ static void DaosDestroyReader(CP_Services Svcs, DP_RS_Stream RS_Stream_v) free(RS_Stream); } -static void DaosReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_Data, attr_list attrs) +static void DaosReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, + attr_list attrs) { PERFSTUBS_TIMER_START_FUNC(timer); DaosReadRequestMsg ReadRequestMsg = (DaosReadRequestMsg)msg_v; @@ -261,8 +245,8 @@ static void DaosReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, "Got a request to read remote memory " "from reader rank %d: timestep %d, " "offset %d, length %d\n", - RequestingRank, ReadRequestMsg->Timestep, - ReadRequestMsg->Offset, ReadRequestMsg->Length); + RequestingRank, ReadRequestMsg->Timestep, ReadRequestMsg->Offset, + ReadRequestMsg->Length); while (tmp != NULL) { if (tmp->Timestep == ReadRequestMsg->Timestep) @@ -275,21 +259,19 @@ static void DaosReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, ReadReplyMsg.Data = tmp->Data.block + ReadRequestMsg->Offset; ReadReplyMsg.RS_Stream = ReadRequestMsg->RS_Stream; ReadReplyMsg.NotifyCondition = ReadRequestMsg->NotifyCondition; - Svcs->verbose( - WS_Stream->CP_Stream, DPTraceVerbose, - "Sending a reply to reader rank %d for remote memory read\n", - RequestingRank); + Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, + "Sending a reply to reader rank %d for remote memory read\n", + RequestingRank); if (!WSR_Stream->ReaderContactInfo[RequestingRank].Conn) { attr_list List = attr_list_from_string( - WSR_Stream->ReaderContactInfo[RequestingRank] - .ContactString); + WSR_Stream->ReaderContactInfo[RequestingRank].ContactString); CMConnection Conn = CMget_conn(cm, List); free_attr_list(List); WSR_Stream->ReaderContactInfo[RequestingRank].Conn = Conn; } - CMwrite(WSR_Stream->ReaderContactInfo[RequestingRank].Conn, - WS_Stream->ReadReplyFormat, &ReadReplyMsg); + CMwrite(WSR_Stream->ReaderContactInfo[RequestingRank].Conn, WS_Stream->ReadReplyFormat, + &ReadReplyMsg); PERFSTUBS_TIMER_STOP_FUNC(timer); return; @@ -322,8 +304,8 @@ typedef struct _DaosCompletionHandle struct _DaosCompletionHandle *Next; } *DaosCompletionHandle; -static void DaosReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_Data, attr_list attrs) +static void DaosReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, + attr_list attrs) { PERFSTUBS_TIMER_START_FUNC(timer); DaosReadReplyMsg ReadReplyMsg = (DaosReadReplyMsg)msg_v; @@ -344,16 +326,14 @@ static void DaosReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, if (!Handle) { - Svcs->verbose( - RS_Stream->CP_Stream, DPTraceVerbose, - "Got a reply to remote memory read, but condition not found\n"); + Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, + "Got a reply to remote memory read, but condition not found\n"); PERFSTUBS_TIMER_STOP_FUNC(timer); return; } - Svcs->verbose( - RS_Stream->CP_Stream, DPTraceVerbose, - "Got a reply to remote memory read from rank %d, condition is %d\n", - Handle->Rank, ReadReplyMsg->NotifyCondition); + Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, + "Got a reply to remote memory read from rank %d, condition is %d\n", Handle->Rank, + ReadReplyMsg->NotifyCondition); /* * `Handle` contains the full request info and is `client_data` @@ -369,9 +349,8 @@ static void DaosReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, PERFSTUBS_TIMER_STOP_FUNC(timer); } -static DP_WS_Stream DaosInitWriter(CP_Services Svcs, void *CP_Stream, - struct _SstParams *Params, attr_list DPAttrs, - SstStats Stats) +static DP_WS_Stream DaosInitWriter(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params, + attr_list DPAttrs, SstStats Stats) { Daos_WS_Stream Stream = malloc(sizeof(struct _Daos_WS_Stream)); CManager cm = Svcs->getCManager(CP_Stream); @@ -390,8 +369,7 @@ static DP_WS_Stream DaosInitWriter(CP_Services Svcs, void *CP_Stream, Stream->nvs = NULL; // DAOS_INIT()? Svcs->verbose(Stream->CP_Stream, DPSummaryVerbose, - "Initializing DAOS writer, create store returned %p\n", - Stream->nvs); + "Initializing DAOS writer, create store returned %p\n", Stream->nvs); return (void *)Stream; } @@ -408,8 +386,7 @@ static void DaosDestroyWriter(CP_Services Svcs, DP_WS_Stream WS_Stream_v) free(WS_Stream->Readers[i]->WriterContactInfo); free(WS_Stream->Readers[i]->ReaderContactInfo->ContactString); if (WS_Stream->Readers[i]->ReaderContactInfo->Conn) - CMConnection_close( - WS_Stream->Readers[i]->ReaderContactInfo->Conn); + CMConnection_close(WS_Stream->Readers[i]->ReaderContactInfo->Conn); free(WS_Stream->Readers[i]->ReaderContactInfo); free(WS_Stream->Readers[i]); } @@ -418,10 +395,8 @@ static void DaosDestroyWriter(CP_Services Svcs, DP_WS_Stream WS_Stream_v) free(WS_Stream); } -static DP_WSR_Stream DaosInitWriterPerReader(CP_Services Svcs, - DP_WS_Stream WS_Stream_v, - int readerCohortSize, - CP_PeerCohort PeerCohort, +static DP_WSR_Stream DaosInitWriterPerReader(CP_Services Svcs, DP_WS_Stream WS_Stream_v, + int readerCohortSize, CP_PeerCohort PeerCohort, void **providedReaderInfo_v, void **WriterContactInfoPtr) { @@ -430,8 +405,7 @@ static DP_WSR_Stream DaosInitWriterPerReader(CP_Services Svcs, DaosWriterContactInfo ContactInfo; SMPI_Comm comm = Svcs->getMPIComm(WS_Stream->CP_Stream); int Rank; - DaosReaderContactInfo *providedReaderInfo = - (DaosReaderContactInfo *)providedReaderInfo_v; + DaosReaderContactInfo *providedReaderInfo = (DaosReaderContactInfo *)providedReaderInfo_v; SMPI_Comm_rank(comm, &Rank); @@ -449,28 +423,25 @@ static DP_WSR_Stream DaosInitWriterPerReader(CP_Services Svcs, { WSR_Stream->ReaderContactInfo[i].ContactString = NULL; WSR_Stream->ReaderContactInfo[i].Conn = NULL; - WSR_Stream->ReaderContactInfo[i].RS_Stream = - providedReaderInfo[i]->RS_Stream; - Svcs->verbose( - WS_Stream->CP_Stream, DPPerRankVerbose, - "Received contact info \"%s\", RD_Stream %p for Reader Rank %d\n", - WSR_Stream->ReaderContactInfo[i].ContactString, - WSR_Stream->ReaderContactInfo[i].RS_Stream, i); + WSR_Stream->ReaderContactInfo[i].RS_Stream = providedReaderInfo[i]->RS_Stream; + Svcs->verbose(WS_Stream->CP_Stream, DPPerRankVerbose, + "Received contact info \"%s\", RD_Stream %p for Reader Rank %d\n", + WSR_Stream->ReaderContactInfo[i].ContactString, + WSR_Stream->ReaderContactInfo[i].RS_Stream, i); } /* * add this writer-side reader-specific stream to the parent writer stream * structure */ - WS_Stream->Readers = realloc( - WS_Stream->Readers, sizeof(*WSR_Stream) * (WS_Stream->ReaderCount + 1)); + WS_Stream->Readers = + realloc(WS_Stream->Readers, sizeof(*WSR_Stream) * (WS_Stream->ReaderCount + 1)); WS_Stream->Readers[WS_Stream->ReaderCount] = WSR_Stream; WS_Stream->ReaderCount++; ContactInfo = malloc(sizeof(struct _DaosWriterContactInfo)); memset(ContactInfo, 0, sizeof(struct _DaosWriterContactInfo)); - ContactInfo->ContactString = - NULL; // strdup(nvs_get_store_name(WS_Stream->nvs)); + ContactInfo->ContactString = NULL; // strdup(nvs_get_store_name(WS_Stream->nvs)); ContactInfo->WS_Stream = WSR_Stream; *WriterContactInfoPtr = ContactInfo; WSR_Stream->WriterContactInfo = ContactInfo; @@ -478,22 +449,18 @@ static DP_WSR_Stream DaosInitWriterPerReader(CP_Services Svcs, return WSR_Stream; } -static void DaosDestroyWriterPerReader(CP_Services Svcs, - DP_WSR_Stream WSR_Stream_v) +static void DaosDestroyWriterPerReader(CP_Services Svcs, DP_WSR_Stream WSR_Stream_v) { Daos_WSR_Stream WSR_Stream = (Daos_WSR_Stream)WSR_Stream_v; free(WSR_Stream); } -static void DaosProvideWriterDataToReader(CP_Services Svcs, - DP_RS_Stream RS_Stream_v, - int writerCohortSize, - CP_PeerCohort PeerCohort, +static void DaosProvideWriterDataToReader(CP_Services Svcs, DP_RS_Stream RS_Stream_v, + int writerCohortSize, CP_PeerCohort PeerCohort, void **providedWriterInfo_v) { Daos_RS_Stream RS_Stream = (Daos_RS_Stream)RS_Stream_v; - DaosWriterContactInfo *providedWriterInfo = - (DaosWriterContactInfo *)providedWriterInfo_v; + DaosWriterContactInfo *providedWriterInfo = (DaosWriterContactInfo *)providedWriterInfo_v; RS_Stream->PeerCohort = PeerCohort; RS_Stream->WriterCohortSize = writerCohortSize; @@ -502,19 +469,16 @@ static void DaosProvideWriterDataToReader(CP_Services Svcs, * make a copy of writer contact information (original will not be * preserved) */ - RS_Stream->WriterContactInfo = - malloc(sizeof(struct _DaosWriterContactInfo) * writerCohortSize); + RS_Stream->WriterContactInfo = malloc(sizeof(struct _DaosWriterContactInfo) * writerCohortSize); for (int i = 0; i < writerCohortSize; i++) { RS_Stream->WriterContactInfo[i].ContactString = strdup(providedWriterInfo[i]->ContactString); - RS_Stream->WriterContactInfo[i].WS_Stream = - providedWriterInfo[i]->WS_Stream; - Svcs->verbose( - RS_Stream->CP_Stream, DPPerRankVerbose, - "Received contact info \"%s\", WS_stream %p for WSR Rank %d\n", - RS_Stream->WriterContactInfo[i].ContactString, - RS_Stream->WriterContactInfo[i].WS_Stream, i); + RS_Stream->WriterContactInfo[i].WS_Stream = providedWriterInfo[i]->WS_Stream; + Svcs->verbose(RS_Stream->CP_Stream, DPPerRankVerbose, + "Received contact info \"%s\", WS_stream %p for WSR Rank %d\n", + RS_Stream->WriterContactInfo[i].ContactString, + RS_Stream->WriterContactInfo[i].WS_Stream, i); } RS_Stream->writer_nvs = malloc(sizeof(void *) * writerCohortSize); for (int i = 0; i < writerCohortSize; i++) @@ -524,8 +488,7 @@ static void DaosProvideWriterDataToReader(CP_Services Svcs, } } -static void AddRequestToList(CP_Services Svcs, Daos_RS_Stream Stream, - DaosCompletionHandle Handle) +static void AddRequestToList(CP_Services Svcs, Daos_RS_Stream Stream, DaosCompletionHandle Handle) { Handle->Next = Stream->PendingReadRequests; Stream->PendingReadRequests = Handle; @@ -554,12 +517,11 @@ static void RemoveRequestFromList(CP_Services Svcs, Daos_RS_Stream Stream, Tmp->Next = Tmp->Next->Next; } -static void FailRequestsToRank(CP_Services Svcs, CManager cm, - Daos_RS_Stream Stream, int FailedRank) +static void FailRequestsToRank(CP_Services Svcs, CManager cm, Daos_RS_Stream Stream, int FailedRank) { DaosCompletionHandle Tmp = Stream->PendingReadRequests; - Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, - "Fail pending requests to writer rank %d\n", FailedRank); + Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "Fail pending requests to writer rank %d\n", + FailedRank); while (Tmp != NULL) { if (Tmp->Rank == FailedRank) @@ -571,14 +533,13 @@ static void FailRequestsToRank(CP_Services Svcs, CManager cm, "failed and signalling condition %d\n", Tmp->Rank, Tmp->CMcondition); CMCondition_signal(cm, Tmp->CMcondition); - Svcs->verbose(Tmp->CPStream, DPTraceVerbose, - "Did the signal of condition %d\n", Tmp->Rank, - Tmp->CMcondition); + Svcs->verbose(Tmp->CPStream, DPTraceVerbose, "Did the signal of condition %d\n", + Tmp->Rank, Tmp->CMcondition); } Tmp = Tmp->Next; } - Svcs->verbose(Stream->CP_Stream, DPPerRankVerbose, - "Done Failing requests to writer rank %d\n", FailedRank); + Svcs->verbose(Stream->CP_Stream, DPPerRankVerbose, "Done Failing requests to writer rank %d\n", + FailedRank); } typedef struct _DaosPerTimestepInfo @@ -587,13 +548,11 @@ typedef struct _DaosPerTimestepInfo int CheckInt; } *DaosPerTimestepInfo; -static void *DaosReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, - int Rank, long Timestep, size_t Offset, - size_t Length, void *Buffer, - void *DP_TimestepInfo) +static void *DaosReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, int Rank, long Timestep, + size_t Offset, size_t Length, void *Buffer, void *DP_TimestepInfo) { - Daos_RS_Stream Stream = (Daos_RS_Stream) - Stream_v; /* DP_RS_Stream is the return from InitReader */ + Daos_RS_Stream Stream = + (Daos_RS_Stream)Stream_v; /* DP_RS_Stream is the return from InitReader */ CManager cm = Svcs->getCManager(Stream->CP_Stream); DaosCompletionHandle ret = malloc(sizeof(struct _DaosCompletionHandle)); DaosPerTimestepInfo TimestepInfo = (DaosPerTimestepInfo)DP_TimestepInfo; @@ -621,8 +580,7 @@ static void *DaosReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, void *NVBlock; char *BaseAddr; snprintf(StringName, 20, "Timestep_%ld", Timestep); - BaseAddr = - NULL; // nvs_get_with_malloc(Stream->writer_nvs[Rank], StringName, 1); + BaseAddr = NULL; // nvs_get_with_malloc(Stream->writer_nvs[Rank], StringName, 1); if (BaseAddr) { @@ -639,10 +597,9 @@ static int DaosWaitForCompletion(CP_Services Svcs, void *Handle_v) { DaosCompletionHandle Handle = (DaosCompletionHandle)Handle_v; int Ret = 1; - Svcs->verbose( - Handle->CPStream, DPTraceVerbose, - "Waiting for completion of memory read to rank %d, condition %d\n", - Handle->Rank, Handle->CMcondition); + Svcs->verbose(Handle->CPStream, DPTraceVerbose, + "Waiting for completion of memory read to rank %d, condition %d\n", Handle->Rank, + Handle->CMcondition); /* * Wait for the CM condition to be signalled. If it has been already, * this returns immediately. Copying the incoming data to the waiting @@ -661,21 +618,19 @@ static int DaosWaitForCompletion(CP_Services Svcs, void *Handle_v) } else { - Svcs->verbose( - Handle->CPStream, DPTraceVerbose, - "Remote memory read to rank %d with condition %d has completed\n", - Handle->Rank, Handle->CMcondition); + Svcs->verbose(Handle->CPStream, DPTraceVerbose, + "Remote memory read to rank %d with condition %d has completed\n", + Handle->Rank, Handle->CMcondition); } RemoveRequestFromList(Svcs, Handle->DPStream, Handle); free(Handle); return Ret; } -static void DaosNotifyConnFailure(CP_Services Svcs, DP_RS_Stream Stream_v, - int FailedPeerRank) +static void DaosNotifyConnFailure(CP_Services Svcs, DP_RS_Stream Stream_v, int FailedPeerRank) { - Daos_RS_Stream Stream = (Daos_RS_Stream) - Stream_v; /* DP_RS_Stream is the return from InitReader */ + Daos_RS_Stream Stream = + (Daos_RS_Stream)Stream_v; /* DP_RS_Stream is the return from InitReader */ CManager cm = Svcs->getCManager(Stream->CP_Stream); Svcs->verbose(Stream->CP_Stream, DPPerRankVerbose, "received notification that writer peer " @@ -685,8 +640,7 @@ static void DaosNotifyConnFailure(CP_Services Svcs, DP_RS_Stream Stream_v, FailRequestsToRank(Svcs, cm, Stream, FailedPeerRank); } -static void DaosProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, - struct _SstData *Data, +static void DaosProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, struct _SstData *Data, struct _SstData *LocalMetadata, long Timestep, void **TimestepInfoPtr) { @@ -718,18 +672,15 @@ static void DaosProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, NVBlock = NULL; // nvs_alloc(Stream->nvs, &Data->DataSize, StringName); memcpy(NVBlock, Data->block, Data->DataSize); // nvs_snapshot_(Stream->nvs, &Stream->Rank); - fprintf(stderr, "Did alloc, memcpy and snapshot with name %s\n", - StringName); + fprintf(stderr, "Did alloc, memcpy and snapshot with name %s\n", StringName); } -static void DaosReleaseTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, - long Timestep) +static void DaosReleaseTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, long Timestep) { Daos_WS_Stream Stream = (Daos_WS_Stream)Stream_v; TimestepList List = Stream->Timesteps; - Svcs->verbose(Stream->CP_Stream, DPPerRankVerbose, - "Releasing timestep %ld\n", Timestep); + Svcs->verbose(Stream->CP_Stream, DPPerRankVerbose, "Releasing timestep %ld\n", Timestep); if (Stream->Timesteps->Timestep == Timestep) { Stream->Timesteps = List->Next; @@ -762,52 +713,41 @@ static void DaosReleaseTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, * Shouldn't ever get here because we should never release a * timestep that we don't have. */ - fprintf(stderr, "Failed to release Timestep %ld, not found\n", - Timestep); + fprintf(stderr, "Failed to release Timestep %ld, not found\n", Timestep); assert(0); } } static FMField DaosReaderContactList[] = { - {"ContactString", "string", sizeof(char *), - FMOffset(DaosReaderContactInfo, ContactString)}, - {"reader_ID", "integer", sizeof(void *), - FMOffset(DaosReaderContactInfo, RS_Stream)}, + {"ContactString", "string", sizeof(char *), FMOffset(DaosReaderContactInfo, ContactString)}, + {"reader_ID", "integer", sizeof(void *), FMOffset(DaosReaderContactInfo, RS_Stream)}, {NULL, NULL, 0, 0}}; static FMStructDescRec DaosReaderContactStructs[] = { - {"DaosReaderContactInfo", DaosReaderContactList, - sizeof(struct _DaosReaderContactInfo), NULL}, + {"DaosReaderContactInfo", DaosReaderContactList, sizeof(struct _DaosReaderContactInfo), NULL}, {NULL, NULL, 0, NULL}}; static FMField DaosWriterContactList[] = { - {"ContactString", "string", sizeof(char *), - FMOffset(DaosWriterContactInfo, ContactString)}, - {"writer_ID", "integer", sizeof(void *), - FMOffset(DaosWriterContactInfo, WS_Stream)}, + {"ContactString", "string", sizeof(char *), FMOffset(DaosWriterContactInfo, ContactString)}, + {"writer_ID", "integer", sizeof(void *), FMOffset(DaosWriterContactInfo, WS_Stream)}, {NULL, NULL, 0, 0}}; static FMStructDescRec DaosWriterContactStructs[] = { - {"DaosWriterContactInfo", DaosWriterContactList, - sizeof(struct _DaosWriterContactInfo), NULL}, + {"DaosWriterContactInfo", DaosWriterContactList, sizeof(struct _DaosWriterContactInfo), NULL}, {NULL, NULL, 0, NULL}}; static FMField DaosTimestepInfoList[] = { - {"CheckString", "string", sizeof(char *), - FMOffset(DaosPerTimestepInfo, CheckString)}, - {"CheckInt", "integer", sizeof(void *), - FMOffset(DaosPerTimestepInfo, CheckInt)}, + {"CheckString", "string", sizeof(char *), FMOffset(DaosPerTimestepInfo, CheckString)}, + {"CheckInt", "integer", sizeof(void *), FMOffset(DaosPerTimestepInfo, CheckInt)}, {NULL, NULL, 0, 0}}; static FMStructDescRec DaosTimestepInfoStructs[] = { - {"DaosTimestepInfo", DaosTimestepInfoList, - sizeof(struct _DaosPerTimestepInfo), NULL}, + {"DaosTimestepInfo", DaosTimestepInfoList, sizeof(struct _DaosPerTimestepInfo), NULL}, {NULL, NULL, 0, NULL}}; static struct _CP_DP_Interface daosDPInterface; -static int DaosGetPriority(CP_Services Svcs, void *CP_Stream, - struct _SstParams *Params) +static int DaosGetPriority(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params) { /* The daos DP priority 10 */ return 10; diff --git a/source/adios2/toolkit/sst/dp/dp.c b/source/adios2/toolkit/sst/dp/dp.c index dfde58f830..0884709a67 100644 --- a/source/adios2/toolkit/sst/dp/dp.c +++ b/source/adios2/toolkit/sst/dp/dp.c @@ -57,16 +57,13 @@ static DPlist AddDPPossibility(CP_Services Svcs, void *CP_Stream, DPlist List, return List; } -CP_DP_Interface SelectDP(CP_Services Svcs, void *CP_Stream, - struct _SstParams *Params, int Rank) +CP_DP_Interface SelectDP(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params, int Rank) { CP_DP_Interface Ret; DPlist List = NULL; - List = AddDPPossibility(Svcs, CP_Stream, List, LoadEVpathDP(), "evpath", - Params); + List = AddDPPossibility(Svcs, CP_Stream, List, LoadEVpathDP(), "evpath", Params); #ifdef SST_HAVE_LIBFABRIC - List = - AddDPPossibility(Svcs, CP_Stream, List, LoadRdmaDP(), "rdma", Params); + List = AddDPPossibility(Svcs, CP_Stream, List, LoadRdmaDP(), "rdma", Params); #endif /* SST_HAVE_LIBFABRIC */ #ifdef SST_HAVE_UCX @@ -74,8 +71,7 @@ CP_DP_Interface SelectDP(CP_Services Svcs, void *CP_Stream, #endif /* SST_HAVE_UCX */ #ifdef SST_HAVE_DAOS - List = - AddDPPossibility(Svcs, CP_Stream, List, LoadDaosDP(), "daos", Params); + List = AddDPPossibility(Svcs, CP_Stream, List, LoadDaosDP(), "daos", Params); #endif /* SST_HAVE_DAOS */ #ifdef SST_HAVE_MPI @@ -90,8 +86,7 @@ CP_DP_Interface SelectDP(CP_Services Svcs, void *CP_Stream, if (Params->DataTransport) { if (Rank == 0) - Svcs->verbose(CP_Stream, DPPerStepVerbose, - "Prefered dataplane name is \"%s\"\n", + Svcs->verbose(CP_Stream, DPPerStepVerbose, "Prefered dataplane name is \"%s\"\n", Params->DataTransport); } while (List[i].Interface) diff --git a/source/adios2/toolkit/sst/dp/dummy_dp.c b/source/adios2/toolkit/sst/dp/dummy_dp.c index fc4d9c3c4f..223403fcda 100644 --- a/source/adios2/toolkit/sst/dp/dummy_dp.c +++ b/source/adios2/toolkit/sst/dp/dummy_dp.c @@ -114,25 +114,17 @@ typedef struct _DummyReadRequestMsg } *DummyReadRequestMsg; static FMField DummyReadRequestList[] = { - {"Timestep", "integer", sizeof(long), - FMOffset(DummyReadRequestMsg, Timestep)}, - {"Offset", "integer", sizeof(size_t), - FMOffset(DummyReadRequestMsg, Offset)}, - {"Length", "integer", sizeof(size_t), - FMOffset(DummyReadRequestMsg, Length)}, - {"WS_Stream", "integer", sizeof(void *), - FMOffset(DummyReadRequestMsg, WS_Stream)}, - {"RS_Stream", "integer", sizeof(void *), - FMOffset(DummyReadRequestMsg, RS_Stream)}, - {"RequestingRank", "integer", sizeof(int), - FMOffset(DummyReadRequestMsg, RequestingRank)}, - {"NotifyCondition", "integer", sizeof(int), - FMOffset(DummyReadRequestMsg, NotifyCondition)}, + {"Timestep", "integer", sizeof(long), FMOffset(DummyReadRequestMsg, Timestep)}, + {"Offset", "integer", sizeof(size_t), FMOffset(DummyReadRequestMsg, Offset)}, + {"Length", "integer", sizeof(size_t), FMOffset(DummyReadRequestMsg, Length)}, + {"WS_Stream", "integer", sizeof(void *), FMOffset(DummyReadRequestMsg, WS_Stream)}, + {"RS_Stream", "integer", sizeof(void *), FMOffset(DummyReadRequestMsg, RS_Stream)}, + {"RequestingRank", "integer", sizeof(int), FMOffset(DummyReadRequestMsg, RequestingRank)}, + {"NotifyCondition", "integer", sizeof(int), FMOffset(DummyReadRequestMsg, NotifyCondition)}, {NULL, NULL, 0, 0}}; static FMStructDescRec DummyReadRequestStructs[] = { - {"DummyReadRequest", DummyReadRequestList, - sizeof(struct _DummyReadRequestMsg), NULL}, + {"DummyReadRequest", DummyReadRequestList, sizeof(struct _DummyReadRequestMsg), NULL}, {NULL, NULL, 0, NULL}}; typedef struct _DummyReadReplyMsg @@ -145,25 +137,19 @@ typedef struct _DummyReadReplyMsg } *DummyReadReplyMsg; static FMField DummyReadReplyList[] = { - {"Timestep", "integer", sizeof(long), - FMOffset(DummyReadReplyMsg, Timestep)}, - {"RS_Stream", "integer", sizeof(void *), - FMOffset(DummyReadReplyMsg, RS_Stream)}, - {"DataLength", "integer", sizeof(size_t), - FMOffset(DummyReadReplyMsg, DataLength)}, - {"Data", "char[DataLength]", sizeof(char), - FMOffset(DummyReadReplyMsg, Data)}, - {"NotifyCondition", "integer", sizeof(int), - FMOffset(DummyReadReplyMsg, NotifyCondition)}, + {"Timestep", "integer", sizeof(long), FMOffset(DummyReadReplyMsg, Timestep)}, + {"RS_Stream", "integer", sizeof(void *), FMOffset(DummyReadReplyMsg, RS_Stream)}, + {"DataLength", "integer", sizeof(size_t), FMOffset(DummyReadReplyMsg, DataLength)}, + {"Data", "char[DataLength]", sizeof(char), FMOffset(DummyReadReplyMsg, Data)}, + {"NotifyCondition", "integer", sizeof(int), FMOffset(DummyReadReplyMsg, NotifyCondition)}, {NULL, NULL, 0, 0}}; static FMStructDescRec DummyReadReplyStructs[] = { - {"DummyReadReply", DummyReadReplyList, sizeof(struct _DummyReadReplyMsg), - NULL}, + {"DummyReadReply", DummyReadReplyList, sizeof(struct _DummyReadReplyMsg), NULL}, {NULL, NULL, 0, NULL}}; -static void DummyReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_Data, attr_list attrs); +static void DummyReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, + attr_list attrs); /* * @@ -176,14 +162,12 @@ static void DummyReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, * https://www.cc.gatech.edu/systems/projects/FFS/.) * */ -static DP_RS_Stream DummyInitReader(CP_Services Svcs, void *CP_Stream, - void **ReaderContactInfoPtr, - struct _SstParams *Params, - attr_list WriterContact, SstStats Stats) +static DP_RS_Stream DummyInitReader(CP_Services Svcs, void *CP_Stream, void **ReaderContactInfoPtr, + struct _SstParams *Params, attr_list WriterContact, + SstStats Stats) { Dummy_RS_Stream Stream = malloc(sizeof(struct _Dummy_RS_Stream)); - DummyReaderContactInfo Contact = - malloc(sizeof(struct _DummyReaderContactInfo)); + DummyReaderContactInfo Contact = malloc(sizeof(struct _DummyReaderContactInfo)); CManager cm = Svcs->getCManager(CP_Stream); char *DummyContactString = malloc(64); SMPI_Comm comm = Svcs->getMPIComm(CP_Stream); @@ -199,8 +183,7 @@ static DP_RS_Stream DummyInitReader(CP_Services Svcs, void *CP_Stream, SMPI_Comm_rank(comm, &Stream->Rank); - snprintf(DummyContactString, 64, "Reader Rank %d, test contact", - Stream->Rank); + snprintf(DummyContactString, 64, "Reader Rank %d, test contact", Stream->Rank); /* * add a handler for read reply messages @@ -217,8 +200,8 @@ static DP_RS_Stream DummyInitReader(CP_Services Svcs, void *CP_Stream, return Stream; } -static void DummyReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_Data, attr_list attrs) +static void DummyReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, + attr_list attrs) { PERFSTUBS_TIMER_START_FUNC(timer); DummyReadRequestMsg ReadRequestMsg = (DummyReadRequestMsg)msg_v; @@ -232,8 +215,8 @@ static void DummyReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, "Got a request to read remote memory " "from reader rank %d: timestep %d, " "offset %d, length %d\n", - ReadRequestMsg->RequestingRank, ReadRequestMsg->Timestep, - ReadRequestMsg->Offset, ReadRequestMsg->Length); + ReadRequestMsg->RequestingRank, ReadRequestMsg->Timestep, ReadRequestMsg->Offset, + ReadRequestMsg->Length); while (tmp != NULL) { if (tmp->Timestep == ReadRequestMsg->Timestep) @@ -246,13 +229,12 @@ static void DummyReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, ReadReplyMsg.Data = tmp->Data->block + ReadRequestMsg->Offset; ReadReplyMsg.RS_Stream = ReadRequestMsg->RS_Stream; ReadReplyMsg.NotifyCondition = ReadRequestMsg->NotifyCondition; - Svcs->verbose( - WS_Stream->CP_Stream, DPTraceVerbose, - "Sending a reply to reader rank %d for remote memory read\n", - ReadRequestMsg->RequestingRank); + Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, + "Sending a reply to reader rank %d for remote memory read\n", + ReadRequestMsg->RequestingRank); Svcs->sendToPeer(WS_Stream->CP_Stream, WSR_Stream->PeerCohort, - ReadRequestMsg->RequestingRank, - WS_Stream->ReadReplyFormat, &ReadReplyMsg); + ReadRequestMsg->RequestingRank, WS_Stream->ReadReplyFormat, + &ReadReplyMsg); PERFSTUBS_TIMER_STOP_FUNC(timer); return; } @@ -262,8 +244,7 @@ static void DummyReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, * Shouldn't ever get here because we should never get a request for a * timestep that we don't have. */ - fprintf(stderr, "Failed to read Timestep %ld, not found\n", - ReadRequestMsg->Timestep); + fprintf(stderr, "Failed to read Timestep %ld, not found\n", ReadRequestMsg->Timestep); /* * in the interest of not failing a writer on a reader failure, don't * assert(0) here. Probably this sort of error should close the link to @@ -281,20 +262,18 @@ typedef struct _DummyCompletionHandle int Rank; } *DummyCompletionHandle; -static void DummyReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_Data, attr_list attrs) +static void DummyReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, + attr_list attrs) { PERFSTUBS_TIMER_START_FUNC(timer); DummyReadReplyMsg ReadReplyMsg = (DummyReadReplyMsg)msg_v; Dummy_RS_Stream RS_Stream = ReadReplyMsg->RS_Stream; CP_Services Svcs = (CP_Services)client_Data; - DummyCompletionHandle Handle = - CMCondition_get_client_data(cm, ReadReplyMsg->NotifyCondition); + DummyCompletionHandle Handle = CMCondition_get_client_data(cm, ReadReplyMsg->NotifyCondition); - Svcs->verbose( - RS_Stream->CP_Stream, DPTraceVerbose, - "Got a reply to remote memory read from rank %d, condition is %d\n", - Handle->Rank, ReadReplyMsg->NotifyCondition); + Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, + "Got a reply to remote memory read from rank %d, condition is %d\n", Handle->Rank, + ReadReplyMsg->NotifyCondition); /* * `Handle` contains the full request info and is `client_data` @@ -318,8 +297,7 @@ static void DummyReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, * contact information per se. That can be put off until InitWriterPerReader(). * */ -static DP_WS_Stream DummyInitWriter(CP_Services Svcs, void *CP_Stream, - struct _SstParams *Params, +static DP_WS_Stream DummyInitWriter(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params, attr_list DPAttrs, SstStats Stats) { Dummy_WS_Stream Stream = malloc(sizeof(struct _Dummy_WS_Stream)); @@ -361,10 +339,8 @@ static DP_WS_Stream DummyInitWriter(CP_Services Svcs, void *CP_Stream, * See https://www.cc.gatech.edu/systems/projects/FFS/.) * */ -static DP_WSR_Stream DummyInitWriterPerReader(CP_Services Svcs, - DP_WS_Stream WS_Stream_v, - int readerCohortSize, - CP_PeerCohort PeerCohort, +static DP_WSR_Stream DummyInitWriterPerReader(CP_Services Svcs, DP_WS_Stream WS_Stream_v, + int readerCohortSize, CP_PeerCohort PeerCohort, void **providedReaderInfo_v, void **WriterContactInfoPtr) { @@ -374,8 +350,7 @@ static DP_WSR_Stream DummyInitWriterPerReader(CP_Services Svcs, SMPI_Comm comm = Svcs->getMPIComm(WS_Stream->CP_Stream); int Rank; char *DummyContactString = malloc(64); - DummyReaderContactInfo *providedReaderInfo = - (DummyReaderContactInfo *)providedReaderInfo_v; + DummyReaderContactInfo *providedReaderInfo = (DummyReaderContactInfo *)providedReaderInfo_v; SMPI_Comm_rank(comm, &Rank); snprintf(DummyContactString, 64, "Writer Rank %d, test contact", Rank); @@ -393,21 +368,19 @@ static DP_WSR_Stream DummyInitWriterPerReader(CP_Services Svcs, { WSR_Stream->ReaderContactInfo[i].ContactString = strdup(providedReaderInfo[i]->ContactString); - WSR_Stream->ReaderContactInfo[i].RS_Stream = - providedReaderInfo[i]->RS_Stream; - Svcs->verbose( - WS_Stream->CP_Stream, DPTraceVerbose, - "Received contact info \"%s\", RD_Stream %p for Reader Rank %d\n", - WSR_Stream->ReaderContactInfo[i].ContactString, - WSR_Stream->ReaderContactInfo[i].RS_Stream, i); + WSR_Stream->ReaderContactInfo[i].RS_Stream = providedReaderInfo[i]->RS_Stream; + Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, + "Received contact info \"%s\", RD_Stream %p for Reader Rank %d\n", + WSR_Stream->ReaderContactInfo[i].ContactString, + WSR_Stream->ReaderContactInfo[i].RS_Stream, i); } /* * add this writer-side reader-specific stream to the parent writer stream * structure */ - WS_Stream->Readers = realloc( - WS_Stream->Readers, sizeof(*WSR_Stream) * (WS_Stream->ReaderCount + 1)); + WS_Stream->Readers = + realloc(WS_Stream->Readers, sizeof(*WSR_Stream) * (WS_Stream->ReaderCount + 1)); WS_Stream->Readers[WS_Stream->ReaderCount] = WSR_Stream; WS_Stream->ReaderCount++; @@ -420,15 +393,12 @@ static DP_WSR_Stream DummyInitWriterPerReader(CP_Services Svcs, return WSR_Stream; } -static void DummyProvideWriterDataToReader(CP_Services Svcs, - DP_RS_Stream RS_Stream_v, - int writerCohortSize, - CP_PeerCohort PeerCohort, +static void DummyProvideWriterDataToReader(CP_Services Svcs, DP_RS_Stream RS_Stream_v, + int writerCohortSize, CP_PeerCohort PeerCohort, void **providedWriterInfo_v) { Dummy_RS_Stream RS_Stream = (Dummy_RS_Stream)RS_Stream_v; - DummyWriterContactInfo *providedWriterInfo = - (DummyWriterContactInfo *)providedWriterInfo_v; + DummyWriterContactInfo *providedWriterInfo = (DummyWriterContactInfo *)providedWriterInfo_v; RS_Stream->PeerCohort = PeerCohort; RS_Stream->WriterCohortSize = writerCohortSize; @@ -443,13 +413,11 @@ static void DummyProvideWriterDataToReader(CP_Services Svcs, { RS_Stream->WriterContactInfo[i].ContactString = strdup(providedWriterInfo[i]->ContactString); - RS_Stream->WriterContactInfo[i].WS_Stream = - providedWriterInfo[i]->WS_Stream; - Svcs->verbose( - RS_Stream->CP_Stream, DPTraceVerbose, - "Received contact info \"%s\", WS_stream %p for WSR Rank %d\n", - RS_Stream->WriterContactInfo[i].ContactString, - RS_Stream->WriterContactInfo[i].WS_Stream, i); + RS_Stream->WriterContactInfo[i].WS_Stream = providedWriterInfo[i]->WS_Stream; + Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, + "Received contact info \"%s\", WS_stream %p for WSR Rank %d\n", + RS_Stream->WriterContactInfo[i].ContactString, + RS_Stream->WriterContactInfo[i].WS_Stream, i); } } @@ -472,13 +440,12 @@ typedef struct _DummyPerTimestepInfo * handle. * */ -static void *DummyReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, - int Rank, long Timestep, size_t Offset, - size_t Length, void *Buffer, +static void *DummyReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, int Rank, long Timestep, + size_t Offset, size_t Length, void *Buffer, void *DP_TimestepInfo) { - Dummy_RS_Stream Stream = (Dummy_RS_Stream) - Stream_v; /* DP_RS_Stream is the return from InitReader */ + Dummy_RS_Stream Stream = + (Dummy_RS_Stream)Stream_v; /* DP_RS_Stream is the return from InitReader */ CManager cm = Svcs->getCManager(Stream->CP_Stream); DummyCompletionHandle ret = malloc(sizeof(struct _DummyCompletionHandle)); struct _DummyReadRequestMsg ReadRequestMsg; @@ -509,8 +476,8 @@ static void *DummyReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, ReadRequestMsg.RS_Stream = Stream; ReadRequestMsg.RequestingRank = Stream->Rank; ReadRequestMsg.NotifyCondition = ret->CMcondition; - Svcs->sendToPeer(Stream->CP_Stream, Stream->PeerCohort, Rank, - Stream->ReadRequestFormat, &ReadRequestMsg); + Svcs->sendToPeer(Stream->CP_Stream, Stream->PeerCohort, Rank, Stream->ReadRequestFormat, + &ReadRequestMsg); return ret; } @@ -528,10 +495,9 @@ static int DummyWaitForCompletion(CP_Services Svcs, void *Handle_v) { DummyCompletionHandle Handle = (DummyCompletionHandle)Handle_v; int Ret; - Svcs->verbose( - Handle->CPStream, DPTraceVerbose, - "Waiting for completion of memory read to rank %d, condition %d\n", - Handle->Rank, Handle->CMcondition); + Svcs->verbose(Handle->CPStream, DPTraceVerbose, + "Waiting for completion of memory read to rank %d, condition %d\n", Handle->Rank, + Handle->CMcondition); /* * Wait for the CM condition to be signalled. If it has been already, * this returns immediately. Copying the incoming data to the waiting @@ -570,19 +536,17 @@ static int DummyWaitForCompletion(CP_Services Svcs, void *Handle_v) * should be described by DPInterface.TimestepInfoFormats. * */ -static void DummyProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, - struct _SstData *Data, +static void DummyProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, struct _SstData *Data, struct _SstData *LocalMetadata, long Timestep, void **TimestepInfoPtr) { Dummy_WS_Stream Stream = (Dummy_WS_Stream)Stream_v; TimestepList Entry = malloc(sizeof(struct _TimestepEntry)); - struct _DummyPerTimestepInfo *Info = - malloc(sizeof(struct _DummyPerTimestepInfo)); + struct _DummyPerTimestepInfo *Info = malloc(sizeof(struct _DummyPerTimestepInfo)); Info->CheckString = malloc(64); - snprintf(Info->CheckString, 64, "Dummy info for timestep %ld from rank %d", - Timestep, Stream->Rank); + snprintf(Info->CheckString, 64, "Dummy info for timestep %ld from rank %d", Timestep, + Stream->Rank); Info->CheckInt = Stream->Rank * 1000 + Timestep; Entry->Data = Data; Entry->Timestep = Timestep; @@ -601,14 +565,12 @@ static void DummyProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, * */ -static void DummyReleaseTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, - long Timestep) +static void DummyReleaseTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, long Timestep) { Dummy_WS_Stream Stream = (Dummy_WS_Stream)Stream_v; TimestepList List = Stream->Timesteps; - Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "Releasing timestep %ld\n", - Timestep); + Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "Releasing timestep %ld\n", Timestep); if (Stream->Timesteps->Timestep == Timestep) { Stream->Timesteps = List->Next; @@ -633,47 +595,39 @@ static void DummyReleaseTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, * Shouldn't ever get here because we should never release a * timestep that we don't have. */ - fprintf(stderr, "Failed to release Timestep %ld, not found\n", - Timestep); + fprintf(stderr, "Failed to release Timestep %ld, not found\n", Timestep); assert(0); } } static FMField DummyReaderContactList[] = { - {"ContactString", "string", sizeof(char *), - FMOffset(DummyReaderContactInfo, ContactString)}, - {"reader_ID", "integer", sizeof(void *), - FMOffset(DummyReaderContactInfo, RS_Stream)}, + {"ContactString", "string", sizeof(char *), FMOffset(DummyReaderContactInfo, ContactString)}, + {"reader_ID", "integer", sizeof(void *), FMOffset(DummyReaderContactInfo, RS_Stream)}, {NULL, NULL, 0, 0}}; static FMStructDescRec DummyReaderContactStructs[] = { - {"DummyReaderContactInfo", DummyReaderContactList, - sizeof(struct _DummyReaderContactInfo), NULL}, + {"DummyReaderContactInfo", DummyReaderContactList, sizeof(struct _DummyReaderContactInfo), + NULL}, {NULL, NULL, 0, NULL}}; static FMField DummyWriterContactList[] = { - {"ContactString", "string", sizeof(char *), - FMOffset(DummyWriterContactInfo, ContactString)}, - {"writer_ID", "integer", sizeof(void *), - FMOffset(DummyWriterContactInfo, WS_Stream)}, + {"ContactString", "string", sizeof(char *), FMOffset(DummyWriterContactInfo, ContactString)}, + {"writer_ID", "integer", sizeof(void *), FMOffset(DummyWriterContactInfo, WS_Stream)}, {NULL, NULL, 0, 0}}; static FMStructDescRec DummyWriterContactStructs[] = { - {"DummyWriterContactInfo", DummyWriterContactList, - sizeof(struct _DummyWriterContactInfo), NULL}, + {"DummyWriterContactInfo", DummyWriterContactList, sizeof(struct _DummyWriterContactInfo), + NULL}, {NULL, NULL, 0, NULL}}; #ifdef NOTDEF static FMField DummyTimestepInfoList[] = { - {"CheckString", "string", sizeof(char *), - FMOffset(DummyPerTimestepInfo, CheckString)}, - {"CheckInt", "integer", sizeof(void *), - FMOffset(DummyPerTimestepInfo, CheckInt)}, + {"CheckString", "string", sizeof(char *), FMOffset(DummyPerTimestepInfo, CheckString)}, + {"CheckInt", "integer", sizeof(void *), FMOffset(DummyPerTimestepInfo, CheckInt)}, {NULL, NULL, 0, 0}}; static FMStructDescRec DummyTimestepInfoStructs[] = { - {"DummyTimestepInfo", DummyTimestepInfoList, - sizeof(struct _DummyPerTimestepInfo), NULL}, + {"DummyTimestepInfo", DummyTimestepInfoList, sizeof(struct _DummyPerTimestepInfo), NULL}, {NULL, NULL, 0, NULL}}; #endif diff --git a/source/adios2/toolkit/sst/dp/evpath_dp.c b/source/adios2/toolkit/sst/dp/evpath_dp.c index 8c845989a5..9d418ac287 100644 --- a/source/adios2/toolkit/sst/dp/evpath_dp.c +++ b/source/adios2/toolkit/sst/dp/evpath_dp.c @@ -94,8 +94,7 @@ typedef struct _Evpath_WSR_Stream char *ReaderRequestArray; SstPreloadModeType CurPreloadMode; struct _EvpathReaderContactInfo *ReaderContactInfo; - struct _EvpathWriterContactInfo - *WriterContactInfo; /* included so we can free on destroy */ + struct _EvpathWriterContactInfo *WriterContactInfo; /* included so we can free on destroy */ } *Evpath_WSR_Stream; typedef struct _TimestepEntry @@ -165,25 +164,17 @@ typedef struct _EvpathReadRequestMsg } *EvpathReadRequestMsg; static FMField EvpathReadRequestList[] = { - {"Timestep", "integer", sizeof(long), - FMOffset(EvpathReadRequestMsg, Timestep)}, - {"Offset", "integer", sizeof(size_t), - FMOffset(EvpathReadRequestMsg, Offset)}, - {"Length", "integer", sizeof(size_t), - FMOffset(EvpathReadRequestMsg, Length)}, - {"WS_Stream", "integer", sizeof(void *), - FMOffset(EvpathReadRequestMsg, WS_Stream)}, - {"RS_Stream", "integer", sizeof(void *), - FMOffset(EvpathReadRequestMsg, RS_Stream)}, - {"RequestingRank", "integer", sizeof(int), - FMOffset(EvpathReadRequestMsg, RequestingRank)}, - {"NotifyCondition", "integer", sizeof(int), - FMOffset(EvpathReadRequestMsg, NotifyCondition)}, + {"Timestep", "integer", sizeof(long), FMOffset(EvpathReadRequestMsg, Timestep)}, + {"Offset", "integer", sizeof(size_t), FMOffset(EvpathReadRequestMsg, Offset)}, + {"Length", "integer", sizeof(size_t), FMOffset(EvpathReadRequestMsg, Length)}, + {"WS_Stream", "integer", sizeof(void *), FMOffset(EvpathReadRequestMsg, WS_Stream)}, + {"RS_Stream", "integer", sizeof(void *), FMOffset(EvpathReadRequestMsg, RS_Stream)}, + {"RequestingRank", "integer", sizeof(int), FMOffset(EvpathReadRequestMsg, RequestingRank)}, + {"NotifyCondition", "integer", sizeof(int), FMOffset(EvpathReadRequestMsg, NotifyCondition)}, {NULL, NULL, 0, 0}}; static FMStructDescRec EvpathReadRequestStructs[] = { - {"EvpathReadRequest", EvpathReadRequestList, - sizeof(struct _EvpathReadRequestMsg), NULL}, + {"EvpathReadRequest", EvpathReadRequestList, sizeof(struct _EvpathReadRequestMsg), NULL}, {NULL, NULL, 0, NULL}}; typedef struct _EvpathReadReplyMsg @@ -196,25 +187,19 @@ typedef struct _EvpathReadReplyMsg } *EvpathReadReplyMsg; static FMField EvpathReadReplyList[] = { - {"Timestep", "integer", sizeof(long), - FMOffset(EvpathReadReplyMsg, Timestep)}, - {"RS_Stream", "integer", sizeof(void *), - FMOffset(EvpathReadReplyMsg, RS_Stream)}, - {"DataLength", "integer", sizeof(size_t), - FMOffset(EvpathReadReplyMsg, DataLength)}, - {"Data", "char[DataLength]", sizeof(char), - FMOffset(EvpathReadReplyMsg, Data)}, - {"NotifyCondition", "integer", sizeof(int), - FMOffset(EvpathReadReplyMsg, NotifyCondition)}, + {"Timestep", "integer", sizeof(long), FMOffset(EvpathReadReplyMsg, Timestep)}, + {"RS_Stream", "integer", sizeof(void *), FMOffset(EvpathReadReplyMsg, RS_Stream)}, + {"DataLength", "integer", sizeof(size_t), FMOffset(EvpathReadReplyMsg, DataLength)}, + {"Data", "char[DataLength]", sizeof(char), FMOffset(EvpathReadReplyMsg, Data)}, + {"NotifyCondition", "integer", sizeof(int), FMOffset(EvpathReadReplyMsg, NotifyCondition)}, {NULL, NULL, 0, 0}}; static FMStructDescRec EvpathReadReplyStructs[] = { - {"EvpathReadReply", EvpathReadReplyList, sizeof(struct _EvpathReadReplyMsg), - NULL}, + {"EvpathReadReply", EvpathReadReplyList, sizeof(struct _EvpathReadReplyMsg), NULL}, {NULL, NULL, 0, NULL}}; -static void EvpathReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_Data, attr_list attrs); +static void EvpathReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, + attr_list attrs); typedef struct _EvpathPreloadMsg { @@ -227,40 +212,30 @@ typedef struct _EvpathPreloadMsg static FMField EvpathPreloadList[] = { {"Timestep", "integer", sizeof(long), FMOffset(EvpathPreloadMsg, Timestep)}, - {"DataLength", "integer", sizeof(size_t), - FMOffset(EvpathPreloadMsg, DataLength)}, - {"WriterRank", "integer", sizeof(size_t), - FMOffset(EvpathPreloadMsg, WriterRank)}, - {"RS_Stream", "integer", sizeof(void *), - FMOffset(EvpathPreloadMsg, RS_Stream)}, - {"Data", "char[DataLength]", sizeof(char), - FMOffset(EvpathPreloadMsg, Data)}, + {"DataLength", "integer", sizeof(size_t), FMOffset(EvpathPreloadMsg, DataLength)}, + {"WriterRank", "integer", sizeof(size_t), FMOffset(EvpathPreloadMsg, WriterRank)}, + {"RS_Stream", "integer", sizeof(void *), FMOffset(EvpathPreloadMsg, RS_Stream)}, + {"Data", "char[DataLength]", sizeof(char), FMOffset(EvpathPreloadMsg, Data)}, {NULL, NULL, 0, 0}}; static FMStructDescRec EvpathPreloadStructs[] = { - {"EvpathPreload", EvpathPreloadList, sizeof(struct _EvpathPreloadMsg), - NULL}, + {"EvpathPreload", EvpathPreloadList, sizeof(struct _EvpathPreloadMsg), NULL}, {NULL, NULL, 0, NULL}}; -static void EvpathPreloadHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_Data, attr_list attrs); -static void DiscardPriorPreloaded(CP_Services Svcs, Evpath_RS_Stream RS_Stream, - long Timestep); -static void SendPreloadMsgs(CP_Services Svcs, Evpath_WSR_Stream WSR_Stream, - TimestepList TS); -static void SendSpeculativePreloadMsgs(CP_Services Svcs, - Evpath_WSR_Stream WSR_Stream, +static void EvpathPreloadHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, + attr_list attrs); +static void DiscardPriorPreloaded(CP_Services Svcs, Evpath_RS_Stream RS_Stream, long Timestep); +static void SendPreloadMsgs(CP_Services Svcs, Evpath_WSR_Stream WSR_Stream, TimestepList TS); +static void SendSpeculativePreloadMsgs(CP_Services Svcs, Evpath_WSR_Stream WSR_Stream, TimestepList TS); // reader-side routine, called by the main thread -static DP_RS_Stream EvpathInitReader(CP_Services Svcs, void *CP_Stream, - void **ReaderContactInfoPtr, - struct _SstParams *Params, - attr_list WriterContact, SstStats Stats) +static DP_RS_Stream EvpathInitReader(CP_Services Svcs, void *CP_Stream, void **ReaderContactInfoPtr, + struct _SstParams *Params, attr_list WriterContact, + SstStats Stats) { Evpath_RS_Stream Stream = malloc(sizeof(struct _Evpath_RS_Stream)); - EvpathReaderContactInfo Contact = - malloc(sizeof(struct _EvpathReaderContactInfo)); + EvpathReaderContactInfo Contact = malloc(sizeof(struct _EvpathReaderContactInfo)); CManager cm = Svcs->getCManager(CP_Stream); char *EvpathContactString; SMPI_Comm comm = Svcs->getMPIComm(CP_Stream); @@ -289,8 +264,7 @@ static DP_RS_Stream EvpathInitReader(CP_Services Svcs, void *CP_Stream, } else { - set_string_attr(ListenAttrs, attr_atom_from_string("CM_TRANSPORT"), - strdup("sockets")); + set_string_attr(ListenAttrs, attr_atom_from_string("CM_TRANSPORT"), strdup("sockets")); } if (Params->DataInterface) @@ -354,8 +328,7 @@ static void EvpathDestroyReader(CP_Services Svcs, DP_RS_Stream RS_Stream_v) } // writer side routine, called by the -static void MarkReadRequest(TimestepList TS, DP_WSR_Stream WSR_Stream_v, - int RequestingRank) +static void MarkReadRequest(TimestepList TS, DP_WSR_Stream WSR_Stream_v, int RequestingRank) { Evpath_WSR_Stream Reader = (Evpath_WSR_Stream)WSR_Stream_v; ReaderRequestTrackPtr ReqList = TS->ReaderRequests; @@ -379,9 +352,8 @@ static void MarkReadRequest(TimestepList TS, DP_WSR_Stream WSR_Stream_v, } // writer side routine, called by the network handler thread -static void EvpathReadRequestHandler(CManager cm, CMConnection incoming_conn, - void *msg_v, void *client_Data, - attr_list attrs) +static void EvpathReadRequestHandler(CManager cm, CMConnection incoming_conn, void *msg_v, + void *client_Data, attr_list attrs) { PERFSTUBS_TIMER_START_FUNC(timer); EvpathReadRequestMsg ReadRequestMsg = (EvpathReadRequestMsg)msg_v; @@ -396,8 +368,8 @@ static void EvpathReadRequestHandler(CManager cm, CMConnection incoming_conn, "Got a request to read remote memory " "from reader rank %d: timestep %d, " "offset %d, length %d\n", - RequestingRank, ReadRequestMsg->Timestep, - ReadRequestMsg->Offset, ReadRequestMsg->Length); + RequestingRank, ReadRequestMsg->Timestep, ReadRequestMsg->Offset, + ReadRequestMsg->Length); pthread_mutex_lock(&WS_Stream->DataLock); tmp = WS_Stream->Timesteps; while (tmp != NULL) @@ -414,16 +386,14 @@ static void EvpathReadRequestHandler(CManager cm, CMConnection incoming_conn, ReadReplyMsg.Data = tmp->Data.block + ReadRequestMsg->Offset; ReadReplyMsg.RS_Stream = ReadRequestMsg->RS_Stream; ReadReplyMsg.NotifyCondition = ReadRequestMsg->NotifyCondition; - Svcs->verbose( - WS_Stream->CP_Stream, DPTraceVerbose, - "Sending a reply to reader rank %d for remote memory read\n", - RequestingRank); + Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, + "Sending a reply to reader rank %d for remote memory read\n", + RequestingRank); ReplyConn = WSR_Stream->ReaderContactInfo[RequestingRank].Conn; if (!ReplyConn) { attr_list List = attr_list_from_string( - WSR_Stream->ReaderContactInfo[RequestingRank] - .ContactString); + WSR_Stream->ReaderContactInfo[RequestingRank].ContactString); pthread_mutex_unlock(&WS_Stream->DataLock); ReplyConn = CMget_conn(cm, List); free_attr_list(List); @@ -485,8 +455,8 @@ typedef struct _EvpathCompletionHandle } *EvpathCompletionHandle; // reader-side routine called by the network handler thread -static void EvpathReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_Data, attr_list attrs) +static void EvpathReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, + attr_list attrs) { PERFSTUBS_TIMER_START_FUNC(timer); EvpathReadReplyMsg ReadReplyMsg = (EvpathReadReplyMsg)msg_v; @@ -507,16 +477,14 @@ static void EvpathReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, if (!Handle) { - Svcs->verbose( - RS_Stream->CP_Stream, DPCriticalVerbose, - "Got a reply to remote memory read, but condition not found\n"); + Svcs->verbose(RS_Stream->CP_Stream, DPCriticalVerbose, + "Got a reply to remote memory read, but condition not found\n"); PERFSTUBS_TIMER_STOP_FUNC(timer); return; } - Svcs->verbose( - RS_Stream->CP_Stream, DPTraceVerbose, - "Got a reply to remote memory read from rank %d, condition is %d\n", - Handle->Rank, ReadReplyMsg->NotifyCondition); + Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, + "Got a reply to remote memory read from rank %d, condition is %d\n", Handle->Rank, + ReadReplyMsg->NotifyCondition); /* * `Handle` contains the full request info and is `client_data` @@ -564,15 +532,12 @@ static unsigned long writeBlockFingerprint(char *Page, size_t Size) } // reader-side routine, called from the main program -static int HandleRequestWithPreloaded(CP_Services Svcs, - Evpath_RS_Stream RS_Stream, int Rank, - long Timestep, size_t Offset, - size_t Length, void *Buffer) +static int HandleRequestWithPreloaded(CP_Services Svcs, Evpath_RS_Stream RS_Stream, int Rank, + long Timestep, size_t Offset, size_t Length, void *Buffer) { RSTimestepList Entry = NULL; Entry = RS_Stream->QueuedTimesteps; - while (Entry && - ((Entry->WriterRank != Rank) || (Entry->Timestep != Timestep))) + while (Entry && ((Entry->WriterRank != Rank) || (Entry->Timestep != Timestep))) { Entry = Entry->Next; } @@ -583,15 +548,13 @@ static int HandleRequestWithPreloaded(CP_Services Svcs, Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, "Satisfying remote memory read with preload from writer rank " "%d for timestep %ld, fprint %lx\n", - Rank, Timestep, - writeBlockFingerprint(Entry->Data, Entry->DataSize)); + Rank, Timestep, writeBlockFingerprint(Entry->Data, Entry->DataSize)); memcpy(Buffer, Entry->Data + Offset, Length); return 1; } // reader-side routine, called from the main program -static void DiscardPriorPreloaded(CP_Services Svcs, Evpath_RS_Stream RS_Stream, - long Timestep) +static void DiscardPriorPreloaded(CP_Services Svcs, Evpath_RS_Stream RS_Stream, long Timestep) { RSTimestepList Entry, Last = NULL; Entry = RS_Stream->QueuedTimesteps; @@ -617,8 +580,7 @@ static void DiscardPriorPreloaded(CP_Services Svcs, Evpath_RS_Stream RS_Stream, Svcs->verbose(RS_Stream->CP_Stream, DPPerRankVerbose, "Discarding prior, TS %ld, data %p, fprint %lx\n", ItemToFree->Timestep, ItemToFree->Data, - writeBlockFingerprint(ItemToFree->Data, - ItemToFree->DataSize)); + writeBlockFingerprint(ItemToFree->Data, ItemToFree->DataSize)); CMreturn_buffer(cm, ItemToFree->Data); } @@ -636,20 +598,19 @@ static void RemoveRequestFromList(CP_Services Svcs, Evpath_RS_Stream Stream, EvpathCompletionHandle Handle); // reader-side routine, called from the network handler thread -static void EvpathPreloadHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_Data, attr_list attrs) +static void EvpathPreloadHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, + attr_list attrs) { EvpathPreloadMsg PreloadMsg = (EvpathPreloadMsg)msg_v; Evpath_RS_Stream RS_Stream = PreloadMsg->RS_Stream; CP_Services Svcs = (CP_Services)client_Data; RSTimestepList Entry = calloc(1, sizeof(*Entry)); - Svcs->verbose( - RS_Stream->CP_Stream, DPPerStepVerbose, - "Got a preload message from writer rank %d for timestep %ld, fprint " - "%lx\n", - PreloadMsg->WriterRank, PreloadMsg->Timestep, - writeBlockFingerprint(PreloadMsg->Data, PreloadMsg->DataLength)); + Svcs->verbose(RS_Stream->CP_Stream, DPPerStepVerbose, + "Got a preload message from writer rank %d for timestep %ld, fprint " + "%lx\n", + PreloadMsg->WriterRank, PreloadMsg->Timestep, + writeBlockFingerprint(PreloadMsg->Data, PreloadMsg->DataLength)); /* arrange for this message data to stay around */ CMtake_buffer(cm, msg_v); @@ -675,9 +636,9 @@ static void EvpathPreloadHandler(CManager cm, CMConnection conn, void *msg_v, { int HadPreload; EvpathCompletionHandle Next = Requests->Next; - HadPreload = HandleRequestWithPreloaded( - Svcs, RS_Stream, Requests->Rank, PreloadMsg->Timestep, - Requests->Offset, Requests->Length, Requests->Buffer); + HadPreload = + HandleRequestWithPreloaded(Svcs, RS_Stream, Requests->Rank, PreloadMsg->Timestep, + Requests->Offset, Requests->Length, Requests->Buffer); if (HadPreload) { CMCondition_signal(cm, Requests->CMcondition); @@ -690,8 +651,7 @@ static void EvpathPreloadHandler(CManager cm, CMConnection conn, void *msg_v, } // writer-side routine, called from the main program -static DP_WS_Stream EvpathInitWriter(CP_Services Svcs, void *CP_Stream, - struct _SstParams *Params, +static DP_WS_Stream EvpathInitWriter(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params, attr_list DPAttrs, SstStats Stats) { Evpath_WS_Stream Stream = malloc(sizeof(struct _Evpath_WS_Stream)); @@ -747,8 +707,7 @@ static void EvpathDestroyWriter(CP_Services Svcs, DP_WS_Stream WS_Stream_v) free(WS_Stream->Readers[i]->ReaderContactInfo->ContactString); if (WS_Stream->Readers[i]->ReaderContactInfo->Conn) { - CMConnection_dereference( - WS_Stream->Readers[i]->ReaderContactInfo->Conn); + CMConnection_dereference(WS_Stream->Readers[i]->ReaderContactInfo->Conn); WS_Stream->Readers[i]->ReaderContactInfo->Conn = NULL; } if (WS_Stream->Readers[i]->ReaderRequestArray) @@ -764,10 +723,8 @@ static void EvpathDestroyWriter(CP_Services Svcs, DP_WS_Stream WS_Stream_v) } // writer-side routine, called from the main program -static DP_WSR_Stream EvpathInitWriterPerReader(CP_Services Svcs, - DP_WS_Stream WS_Stream_v, - int readerCohortSize, - CP_PeerCohort PeerCohort, +static DP_WSR_Stream EvpathInitWriterPerReader(CP_Services Svcs, DP_WS_Stream WS_Stream_v, + int readerCohortSize, CP_PeerCohort PeerCohort, void **providedReaderInfo_v, void **WriterContactInfoPtr) { @@ -777,8 +734,7 @@ static DP_WSR_Stream EvpathInitWriterPerReader(CP_Services Svcs, SMPI_Comm comm = Svcs->getMPIComm(WS_Stream->CP_Stream); int Rank; char *EvpathContactString = malloc(64); - EvpathReaderContactInfo *providedReaderInfo = - (EvpathReaderContactInfo *)providedReaderInfo_v; + EvpathReaderContactInfo *providedReaderInfo = (EvpathReaderContactInfo *)providedReaderInfo_v; SMPI_Comm_rank(comm, &Rank); snprintf(EvpathContactString, 64, "Writer Rank %d, test contact", Rank); @@ -801,21 +757,19 @@ static DP_WSR_Stream EvpathInitWriterPerReader(CP_Services Svcs, WSR_Stream->ReaderContactInfo[i].ContactString = strdup(providedReaderInfo[i]->ContactString); WSR_Stream->ReaderContactInfo[i].Conn = NULL; - WSR_Stream->ReaderContactInfo[i].RS_Stream = - providedReaderInfo[i]->RS_Stream; - Svcs->verbose( - WS_Stream->CP_Stream, DPTraceVerbose, - "Received contact info \"%s\", RD_Stream %p for Reader Rank %d\n", - WSR_Stream->ReaderContactInfo[i].ContactString, - WSR_Stream->ReaderContactInfo[i].RS_Stream, i); + WSR_Stream->ReaderContactInfo[i].RS_Stream = providedReaderInfo[i]->RS_Stream; + Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, + "Received contact info \"%s\", RD_Stream %p for Reader Rank %d\n", + WSR_Stream->ReaderContactInfo[i].ContactString, + WSR_Stream->ReaderContactInfo[i].RS_Stream, i); } /* * add this writer-side reader-specific stream to the parent writer stream * structure */ - WS_Stream->Readers = realloc( - WS_Stream->Readers, sizeof(*WSR_Stream) * (WS_Stream->ReaderCount + 1)); + WS_Stream->Readers = + realloc(WS_Stream->Readers, sizeof(*WSR_Stream) * (WS_Stream->ReaderCount + 1)); WS_Stream->Readers[WS_Stream->ReaderCount] = WSR_Stream; WS_Stream->ReaderCount++; @@ -830,8 +784,7 @@ static DP_WSR_Stream EvpathInitWriterPerReader(CP_Services Svcs, } // writer-side routine, called from the main program -static void EvpathDestroyWriterPerReader(CP_Services Svcs, - DP_WSR_Stream WSR_Stream_v) +static void EvpathDestroyWriterPerReader(CP_Services Svcs, DP_WSR_Stream WSR_Stream_v) { Evpath_WSR_Stream WSR_Stream = (Evpath_WSR_Stream)WSR_Stream_v; if (WSR_Stream->ReaderRequestArray) @@ -843,15 +796,12 @@ static void EvpathDestroyWriterPerReader(CP_Services Svcs, } // reader-side routine, called from the main program -static void EvpathProvideWriterDataToReader(CP_Services Svcs, - DP_RS_Stream RS_Stream_v, - int writerCohortSize, - CP_PeerCohort PeerCohort, +static void EvpathProvideWriterDataToReader(CP_Services Svcs, DP_RS_Stream RS_Stream_v, + int writerCohortSize, CP_PeerCohort PeerCohort, void **providedWriterInfo_v) { Evpath_RS_Stream RS_Stream = (Evpath_RS_Stream)RS_Stream_v; - EvpathWriterContactInfo *providedWriterInfo = - (EvpathWriterContactInfo *)providedWriterInfo_v; + EvpathWriterContactInfo *providedWriterInfo = (EvpathWriterContactInfo *)providedWriterInfo_v; RS_Stream->PeerCohort = PeerCohort; RS_Stream->WriterCohortSize = writerCohortSize; @@ -866,13 +816,11 @@ static void EvpathProvideWriterDataToReader(CP_Services Svcs, { RS_Stream->WriterContactInfo[i].ContactString = strdup(providedWriterInfo[i]->ContactString); - RS_Stream->WriterContactInfo[i].WS_Stream = - providedWriterInfo[i]->WS_Stream; - Svcs->verbose( - RS_Stream->CP_Stream, DPTraceVerbose, - "Received contact info \"%s\", WS_stream %p for WSR Rank %d\n", - RS_Stream->WriterContactInfo[i].ContactString, - RS_Stream->WriterContactInfo[i].WS_Stream, i); + RS_Stream->WriterContactInfo[i].WS_Stream = providedWriterInfo[i]->WS_Stream; + Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, + "Received contact info \"%s\", WS_stream %p for WSR Rank %d\n", + RS_Stream->WriterContactInfo[i].ContactString, + RS_Stream->WriterContactInfo[i].WS_Stream, i); } } @@ -911,14 +859,13 @@ static void RemoveRequestFromList(CP_Services Svcs, Evpath_RS_Stream Stream, } // reader-side routine, called from the network handler (close handler) -static void FailRequestsToRank(CP_Services Svcs, CManager cm, - Evpath_RS_Stream Stream, int FailedRank) +static void FailRequestsToRank(CP_Services Svcs, CManager cm, Evpath_RS_Stream Stream, + int FailedRank) { EvpathCompletionHandle Tmp; int FailedSomethingToRank = 0; Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, - "Fail pending requests to rank %d on stream %p\n", FailedRank, - Stream); + "Fail pending requests to rank %d on stream %p\n", FailedRank, Stream); pthread_mutex_lock(&Stream->DataLock); Tmp = Stream->PendingReadRequests; while (Tmp != NULL) @@ -933,9 +880,8 @@ static void FailRequestsToRank(CP_Services Svcs, CManager cm, "failed and signalling condition %d\n", Tmp->Rank, Tmp->CMcondition); CMCondition_signal(cm, Tmp->CMcondition); - Svcs->verbose(Tmp->CPStream, DPTraceVerbose, - "Did the signal of condition %d\n", Tmp->Rank, - Tmp->CMcondition); + Svcs->verbose(Tmp->CPStream, DPTraceVerbose, "Did the signal of condition %d\n", + Tmp->Rank, Tmp->CMcondition); } Tmp = Tmp->Next; } @@ -959,17 +905,15 @@ static void FailRequestsToRank(CP_Services Svcs, CManager cm, "failed and signalling condition %d\n", Tmp->Rank, Tmp->CMcondition); CMCondition_signal(cm, Tmp->CMcondition); - Svcs->verbose(Tmp->CPStream, DPTraceVerbose, - "Did the signal of condition %d\n", Tmp->Rank, - Tmp->CMcondition); + Svcs->verbose(Tmp->CPStream, DPTraceVerbose, "Did the signal of condition %d\n", + Tmp->Rank, Tmp->CMcondition); } Tmp = Tmp->Next; } } pthread_mutex_unlock(&Stream->DataLock); Svcs->verbose(Stream->CP_Stream, DPPerRankVerbose, - "Done Failing requests to writer %d from stream %p\n", - FailedRank, Stream); + "Done Failing requests to writer %d from stream %p\n", FailedRank, Stream); } typedef struct _EvpathPerTimestepInfo @@ -979,13 +923,12 @@ typedef struct _EvpathPerTimestepInfo } *EvpathPerTimestepInfo; // reader-side routine, called from the main program -static void *EvpathReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, - int Rank, long Timestep, size_t Offset, - size_t Length, void *Buffer, +static void *EvpathReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, int Rank, + long Timestep, size_t Offset, size_t Length, void *Buffer, void *DP_TimestepInfo) { - Evpath_RS_Stream Stream = (Evpath_RS_Stream) - Stream_v; /* DP_RS_Stream is the return from InitReader */ + Evpath_RS_Stream Stream = + (Evpath_RS_Stream)Stream_v; /* DP_RS_Stream is the return from InitReader */ CManager cm = Svcs->getCManager(Stream->CP_Stream); EvpathCompletionHandle ret = malloc(sizeof(struct _EvpathCompletionHandle)); // EvpathPerTimestepInfo TimestepInfo = @@ -1001,8 +944,7 @@ static void *EvpathReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, DiscardPriorPreloaded(Svcs, Stream, Timestep); } LastRequestedTimestep = Timestep; - HadPreload = HandleRequestWithPreloaded(Svcs, Stream, Rank, Timestep, - Offset, Length, Buffer); + HadPreload = HandleRequestWithPreloaded(Svcs, Stream, Rank, Timestep, Offset, Length, Buffer); ret->CPStream = Stream->CP_Stream; ret->DPStream = Stream; ret->Failed = 0; @@ -1056,15 +998,13 @@ static void *EvpathReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "Adios waiting for preload data for Timestep %d " "from Rank %d, WSR_Stream = %p, DP_TimestepInfo %p\n", - Timestep, Rank, Stream->WriterContactInfo[Rank].WS_Stream, - DP_TimestepInfo); + Timestep, Rank, Stream->WriterContactInfo[Rank].WS_Stream, DP_TimestepInfo); return ret; } Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "Adios requesting to read remote memory for Timestep %d " "from Rank %d, WSR_Stream = %p, DP_TimestepInfo %p\n", - Timestep, Rank, Stream->WriterContactInfo[Rank].WS_Stream, - DP_TimestepInfo); + Timestep, Rank, Stream->WriterContactInfo[Rank].WS_Stream, DP_TimestepInfo); /* send request to appropriate writer */ /* memset avoids uninit byte warnings from valgrind */ @@ -1076,8 +1016,8 @@ static void *EvpathReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, ReadRequestMsg.RS_Stream = Stream; ReadRequestMsg.RequestingRank = Stream->Rank; ReadRequestMsg.NotifyCondition = ret->CMcondition; - if (!Svcs->sendToPeer(Stream->CP_Stream, Stream->PeerCohort, Rank, - Stream->ReadRequestFormat, &ReadRequestMsg)) + if (!Svcs->sendToPeer(Stream->CP_Stream, Stream->PeerCohort, Rank, Stream->ReadRequestFormat, + &ReadRequestMsg)) { ret->Failed = 1; CMCondition_signal(cm, ret->CMcondition); @@ -1092,10 +1032,9 @@ static int EvpathWaitForCompletion(CP_Services Svcs, void *Handle_v) EvpathCompletionHandle Handle = (EvpathCompletionHandle)Handle_v; int Ret = 1; if (Handle->CMcondition != -1) - Svcs->verbose( - Handle->CPStream, DPTraceVerbose, - "Waiting for completion of memory read to rank %d, condition %d\n", - Handle->Rank, Handle->CMcondition); + Svcs->verbose(Handle->CPStream, DPTraceVerbose, + "Waiting for completion of memory read to rank %d, condition %d\n", + Handle->Rank, Handle->CMcondition); /* * Wait for the CM condition to be signalled. If it has been already, * this returns immediately. Copying the incoming data to the waiting @@ -1128,11 +1067,10 @@ static int EvpathWaitForCompletion(CP_Services Svcs, void *Handle_v) } // reader-side routine, called from the network handler thread -static void EvpathNotifyConnFailure(CP_Services Svcs, DP_RS_Stream Stream_v, - int FailedPeerRank) +static void EvpathNotifyConnFailure(CP_Services Svcs, DP_RS_Stream Stream_v, int FailedPeerRank) { - Evpath_RS_Stream Stream = (Evpath_RS_Stream) - Stream_v; /* DP_RS_Stream is the return from InitReader */ + Evpath_RS_Stream Stream = + (Evpath_RS_Stream)Stream_v; /* DP_RS_Stream is the return from InitReader */ CManager cm = Svcs->getCManager(Stream->CP_Stream); Svcs->verbose(Stream->CP_Stream, DPPerRankVerbose, "received notification that writer peer " @@ -1143,19 +1081,15 @@ static void EvpathNotifyConnFailure(CP_Services Svcs, DP_RS_Stream Stream_v, } // writer-side routine, called from the main program -static void EvpathWSReaderRegisterTimestep(CP_Services Svcs, - DP_WSR_Stream WSRStream_v, - long Timestep, - SstPreloadModeType PreloadMode) +static void EvpathWSReaderRegisterTimestep(CP_Services Svcs, DP_WSR_Stream WSRStream_v, + long Timestep, SstPreloadModeType PreloadMode) { Evpath_WSR_Stream WSR_Stream = (Evpath_WSR_Stream)WSRStream_v; - Evpath_WS_Stream WS_Stream = - WSR_Stream->WS_Stream; /* pointer to writer struct */ + Evpath_WS_Stream WS_Stream = WSR_Stream->WS_Stream; /* pointer to writer struct */ TimestepList Entry; pthread_mutex_lock(&WS_Stream->DataLock); - if ((WSR_Stream->CurPreloadMode == SstPreloadSpeculative) && - (PreloadMode == SstPreloadLearned)) + if ((WSR_Stream->CurPreloadMode == SstPreloadSpeculative) && (PreloadMode == SstPreloadLearned)) { // Never transition from Speculative to Learned, because the writer // doesn't have the read knowledge @@ -1175,16 +1109,14 @@ static void EvpathWSReaderRegisterTimestep(CP_Services Svcs, } if (!Entry) { - fprintf( - stderr, - "Didn't find timestep in per reader register, shouldn't happen\n"); + fprintf(stderr, "Didn't find timestep in per reader register, shouldn't happen\n"); pthread_mutex_unlock(&WS_Stream->DataLock); return; } Svcs->verbose(WS_Stream->CP_Stream, DPPerRankVerbose, - "Per reader registration for timestep %ld, preload mode %d\n", - Timestep, PreloadMode); + "Per reader registration for timestep %ld, preload mode %d\n", Timestep, + PreloadMode); if (PreloadMode == SstPreloadLearned) { if (WSR_Stream->ReadPatternLockTimestep == -1) @@ -1193,37 +1125,33 @@ static void EvpathWSReaderRegisterTimestep(CP_Services Svcs, } if (WSR_Stream->ReaderRequestArray) { - Svcs->verbose( - WS_Stream->CP_Stream, DPPerRankVerbose, - "Sending Learned Preload messages, reader %p, timestep %ld, " - "fprint %lx\n", - WSR_Stream, Timestep, - writeBlockFingerprint(Entry->Data.block, Entry->Data.DataSize)); + Svcs->verbose(WS_Stream->CP_Stream, DPPerRankVerbose, + "Sending Learned Preload messages, reader %p, timestep %ld, " + "fprint %lx\n", + WSR_Stream, Timestep, + writeBlockFingerprint(Entry->Data.block, Entry->Data.DataSize)); SendPreloadMsgs(Svcs, WSR_Stream, Entry); } } else if (PreloadMode == SstPreloadSpeculative) { - Svcs->verbose( - WS_Stream->CP_Stream, DPPerRankVerbose, - "Sending Speculative Preload messages, reader %p, timestep %ld\n", - WSR_Stream, Timestep); + Svcs->verbose(WS_Stream->CP_Stream, DPPerRankVerbose, + "Sending Speculative Preload messages, reader %p, timestep %ld\n", WSR_Stream, + Timestep); SendSpeculativePreloadMsgs(Svcs, WSR_Stream, Entry); } pthread_mutex_unlock(&WS_Stream->DataLock); } // reader-side routine, called from the network handler thread -static void EvpathRSTimestepArrived(CP_Services Svcs, DP_RS_Stream RS_Stream_v, - long Timestep, +static void EvpathRSTimestepArrived(CP_Services Svcs, DP_RS_Stream RS_Stream_v, long Timestep, SstPreloadModeType PreloadMode) { Evpath_RS_Stream RS_Stream = (Evpath_RS_Stream)RS_Stream_v; - Svcs->verbose( - RS_Stream->CP_Stream, DPPerRankVerbose, - "EVPATH registering reader arrival of TS %ld metadata, preload mode " - "%d\n", - Timestep, PreloadMode); + Svcs->verbose(RS_Stream->CP_Stream, DPPerRankVerbose, + "EVPATH registering reader arrival of TS %ld metadata, preload mode " + "%d\n", + Timestep, PreloadMode); if (PreloadMode != RS_Stream->CurPreloadMode) { RS_Stream->PreloadActiveTimestep = Timestep; @@ -1232,15 +1160,12 @@ static void EvpathRSTimestepArrived(CP_Services Svcs, DP_RS_Stream RS_Stream_v, } // reader-side routine, called from either thread -static void SendPreloadMsgs(CP_Services Svcs, Evpath_WSR_Stream WSR_Stream, - TimestepList TS) +static void SendPreloadMsgs(CP_Services Svcs, Evpath_WSR_Stream WSR_Stream, TimestepList TS) { - Evpath_WS_Stream WS_Stream = - WSR_Stream->WS_Stream; /* pointer to writer struct */ + Evpath_WS_Stream WS_Stream = WSR_Stream->WS_Stream; /* pointer to writer struct */ struct _EvpathPreloadMsg PreloadMsg; Svcs->verbose(WS_Stream->CP_Stream, DPPerRankVerbose, - "EVPATH Sending preload messages for timestep %ld\n", - TS->Timestep); + "EVPATH Sending preload messages for timestep %ld\n", TS->Timestep); memset(&PreloadMsg, 0, sizeof(PreloadMsg)); PreloadMsg.Timestep = TS->Timestep; PreloadMsg.DataLength = TS->Data.DataSize; @@ -1252,22 +1177,18 @@ static void SendPreloadMsgs(CP_Services Svcs, Evpath_WSR_Stream WSR_Stream, if (WSR_Stream->ReaderRequestArray[i]) { PreloadMsg.RS_Stream = WSR_Stream->ReaderContactInfo[i].RS_Stream; - Svcs->verbose( - WS_Stream->CP_Stream, DPTraceVerbose, - "EVPATH Preload message for timestep %ld, going to rank %d\n", - TS->Timestep, i); - CMwrite(WSR_Stream->ReaderContactInfo[i].Conn, - WS_Stream->PreloadFormat, &PreloadMsg); + Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, + "EVPATH Preload message for timestep %ld, going to rank %d\n", + TS->Timestep, i); + CMwrite(WSR_Stream->ReaderContactInfo[i].Conn, WS_Stream->PreloadFormat, &PreloadMsg); } } } -static void SendSpeculativePreloadMsgs(CP_Services Svcs, - Evpath_WSR_Stream WSR_Stream, +static void SendSpeculativePreloadMsgs(CP_Services Svcs, Evpath_WSR_Stream WSR_Stream, TimestepList TS) { - Evpath_WS_Stream WS_Stream = - WSR_Stream->WS_Stream; /* pointer to writer struct */ + Evpath_WS_Stream WS_Stream = WSR_Stream->WS_Stream; /* pointer to writer struct */ CManager cm = Svcs->getCManager(WS_Stream->CP_Stream); struct _EvpathPreloadMsg PreloadMsg; memset(&PreloadMsg, 0, sizeof(PreloadMsg)); @@ -1280,43 +1201,36 @@ static void SendSpeculativePreloadMsgs(CP_Services Svcs, { if (!WSR_Stream->ReaderContactInfo[i].Conn) { - attr_list List = attr_list_from_string( - WSR_Stream->ReaderContactInfo[i].ContactString); + attr_list List = attr_list_from_string(WSR_Stream->ReaderContactInfo[i].ContactString); CMConnection Conn = CMget_conn(cm, List); free_attr_list(List); if (!Conn) { - Svcs->verbose( - WS_Stream->CP_Stream, DPCriticalVerbose, - "Failed to connect to reader rank %d for response to " - "remote read, assume failure, no response sent\n", - i); + Svcs->verbose(WS_Stream->CP_Stream, DPCriticalVerbose, + "Failed to connect to reader rank %d for response to " + "remote read, assume failure, no response sent\n", + i); return; } WSR_Stream->ReaderContactInfo[i].Conn = Conn; } PreloadMsg.RS_Stream = WSR_Stream->ReaderContactInfo[i].RS_Stream; - CMwrite(WSR_Stream->ReaderContactInfo[i].Conn, WS_Stream->PreloadFormat, - &PreloadMsg); + CMwrite(WSR_Stream->ReaderContactInfo[i].Conn, WS_Stream->PreloadFormat, &PreloadMsg); } } -static void EvpathReaderReleaseTimestep(CP_Services Svcs, - DP_WSR_Stream Stream_v, long Timestep) +static void EvpathReaderReleaseTimestep(CP_Services Svcs, DP_WSR_Stream Stream_v, long Timestep) { Evpath_WSR_Stream WSR_Stream = (Evpath_WSR_Stream)Stream_v; - Evpath_WS_Stream WS_Stream = - WSR_Stream->WS_Stream; /* pointer to writer struct */ + Evpath_WS_Stream WS_Stream = WSR_Stream->WS_Stream; /* pointer to writer struct */ TimestepList tmp; pthread_mutex_lock(&WS_Stream->DataLock); tmp = WS_Stream->Timesteps; - if ((!WSR_Stream->ReaderRequestArray) && - (Timestep == WSR_Stream->ReadPatternLockTimestep)) + if ((!WSR_Stream->ReaderRequestArray) && (Timestep == WSR_Stream->ReadPatternLockTimestep)) { Svcs->verbose(WS_Stream->CP_Stream, DPPerRankVerbose, - "EVPATH Saving the read pattern for timestep %ld\n", - Timestep); + "EVPATH Saving the read pattern for timestep %ld\n", Timestep); /* save the pattern */ while (tmp != NULL) { @@ -1354,8 +1268,7 @@ static void EvpathReaderReleaseTimestep(CP_Services Svcs, pthread_mutex_unlock(&WS_Stream->DataLock); } -static void EvpathProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, - struct _SstData *Data, +static void EvpathProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, struct _SstData *Data, struct _SstData *LocalMetadata, long Timestep, void **TimestepInfoPtr) { @@ -1378,11 +1291,9 @@ static void EvpathProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, Entry->Timestep = Timestep; Entry->Next = NULL; - Svcs->verbose( - WS_Stream->CP_Stream, DPPerRankVerbose, - "ProvideTimestep, registering timestep %ld, data %p, fprint %lx\n", - Timestep, Data->block, - writeBlockFingerprint(Data->block, Data->DataSize)); + Svcs->verbose(WS_Stream->CP_Stream, DPPerRankVerbose, + "ProvideTimestep, registering timestep %ld, data %p, fprint %lx\n", Timestep, + Data->block, writeBlockFingerprint(Data->block, Data->DataSize)); pthread_mutex_lock(&WS_Stream->DataLock); if (WS_Stream->Timesteps) { @@ -1401,14 +1312,12 @@ static void EvpathProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, *TimestepInfoPtr = NULL; } -static void EvpathReleaseTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, - long Timestep) +static void EvpathReleaseTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, long Timestep) { Evpath_WS_Stream WS_Stream = (Evpath_WS_Stream)Stream_v; TimestepList List; - Svcs->verbose(WS_Stream->CP_Stream, DPPerRankVerbose, - "Releasing timestep %ld\n", Timestep); + Svcs->verbose(WS_Stream->CP_Stream, DPPerRankVerbose, "Releasing timestep %ld\n", Timestep); pthread_mutex_lock(&WS_Stream->DataLock); List = WS_Stream->Timesteps; if (WS_Stream->Timesteps && (WS_Stream->Timesteps->Timestep == Timestep)) @@ -1470,35 +1379,30 @@ static void EvpathReleaseTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, * Shouldn't ever get here because we should never release a * timestep that we don't have. */ - fprintf(stderr, "Failed to release Timestep %ld, not found\n", - Timestep); + fprintf(stderr, "Failed to release Timestep %ld, not found\n", Timestep); assert(0); } pthread_mutex_unlock(&WS_Stream->DataLock); } static FMField EvpathReaderContactList[] = { - {"ContactString", "string", sizeof(char *), - FMOffset(EvpathReaderContactInfo, ContactString)}, - {"reader_ID", "integer", sizeof(void *), - FMOffset(EvpathReaderContactInfo, RS_Stream)}, + {"ContactString", "string", sizeof(char *), FMOffset(EvpathReaderContactInfo, ContactString)}, + {"reader_ID", "integer", sizeof(void *), FMOffset(EvpathReaderContactInfo, RS_Stream)}, {NULL, NULL, 0, 0}}; static FMStructDescRec EvpathReaderContactStructs[] = { - {"EvpathReaderContactInfo", EvpathReaderContactList, - sizeof(struct _EvpathReaderContactInfo), NULL}, + {"EvpathReaderContactInfo", EvpathReaderContactList, sizeof(struct _EvpathReaderContactInfo), + NULL}, {NULL, NULL, 0, NULL}}; static FMField EvpathWriterContactList[] = { - {"ContactString", "string", sizeof(char *), - FMOffset(EvpathWriterContactInfo, ContactString)}, - {"writer_ID", "integer", sizeof(void *), - FMOffset(EvpathWriterContactInfo, WS_Stream)}, + {"ContactString", "string", sizeof(char *), FMOffset(EvpathWriterContactInfo, ContactString)}, + {"writer_ID", "integer", sizeof(void *), FMOffset(EvpathWriterContactInfo, WS_Stream)}, {NULL, NULL, 0, 0}}; static FMStructDescRec EvpathWriterContactStructs[] = { - {"EvpathWriterContactInfo", EvpathWriterContactList, - sizeof(struct _EvpathWriterContactInfo), NULL}, + {"EvpathWriterContactInfo", EvpathWriterContactList, sizeof(struct _EvpathWriterContactInfo), + NULL}, {NULL, NULL, 0, NULL}}; // static FMField EvpathTimestepInfoList[] = { @@ -1513,12 +1417,11 @@ static FMStructDescRec EvpathWriterContactStructs[] = { // sizeof(struct _EvpathPerTimestepInfo), NULL}, // {NULL, NULL, 0, NULL}}; -static struct _CP_DP_Interface evpathDPInterface = { - NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, - NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL}; +static struct _CP_DP_Interface evpathDPInterface = {NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, + NULL, NULL, NULL, NULL, NULL, NULL, NULL, NULL, + NULL, NULL, NULL, NULL, NULL, NULL, NULL}; -static int EvpathGetPriority(CP_Services Svcs, void *CP_Stream, - struct _SstParams *Params) +static int EvpathGetPriority(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params) { // Define any unique attributes here // (void)attr_atom_from_string("EVPATH_DP_Attr"); @@ -1536,8 +1439,7 @@ extern NO_SANITIZE_THREAD CP_DP_Interface LoadEVpathDP() evpathDPInterface.initReader = EvpathInitReader; evpathDPInterface.initWriter = EvpathInitWriter; evpathDPInterface.initWriterPerReader = EvpathInitWriterPerReader; - evpathDPInterface.provideWriterDataToReader = - EvpathProvideWriterDataToReader; + evpathDPInterface.provideWriterDataToReader = EvpathProvideWriterDataToReader; evpathDPInterface.readRemoteMemory = EvpathReadRemoteMemory; evpathDPInterface.waitForCompletion = EvpathWaitForCompletion; evpathDPInterface.notifyConnFailure = EvpathNotifyConnFailure; diff --git a/source/adios2/toolkit/sst/dp/mpi_dp.c b/source/adios2/toolkit/sst/dp/mpi_dp.c index a4eda3b79d..612985c146 100644 --- a/source/adios2/toolkit/sst/dp/mpi_dp.c +++ b/source/adios2/toolkit/sst/dp/mpi_dp.c @@ -180,35 +180,25 @@ typedef struct _MpiCompletionHandle } *MpiCompletionHandle; static FMField MpiReadRequestList[] = { - {"TimeStep", "integer", sizeof(long), - FMOffset(MpiReadRequestMsg, TimeStep)}, + {"TimeStep", "integer", sizeof(long), FMOffset(MpiReadRequestMsg, TimeStep)}, {"Offset", "integer", sizeof(size_t), FMOffset(MpiReadRequestMsg, Offset)}, {"Length", "integer", sizeof(size_t), FMOffset(MpiReadRequestMsg, Length)}, - {"StreamWPR", "integer", sizeof(void *), - FMOffset(MpiReadRequestMsg, StreamWPR)}, - {"StreamRS", "integer", sizeof(void *), - FMOffset(MpiReadRequestMsg, StreamRS)}, - {"RequestingRank", "integer", sizeof(int), - FMOffset(MpiReadRequestMsg, RequestingRank)}, - {"NotifyCondition", "integer", sizeof(int), - FMOffset(MpiReadRequestMsg, NotifyCondition)}, + {"StreamWPR", "integer", sizeof(void *), FMOffset(MpiReadRequestMsg, StreamWPR)}, + {"StreamRS", "integer", sizeof(void *), FMOffset(MpiReadRequestMsg, StreamRS)}, + {"RequestingRank", "integer", sizeof(int), FMOffset(MpiReadRequestMsg, RequestingRank)}, + {"NotifyCondition", "integer", sizeof(int), FMOffset(MpiReadRequestMsg, NotifyCondition)}, {NULL, NULL, 0, 0}}; static FMStructDescRec MpiReadRequestStructs[] = { - {"MpiReadRequest", MpiReadRequestList, sizeof(struct _MpiReadRequestMsg), - NULL}, + {"MpiReadRequest", MpiReadRequestList, sizeof(struct _MpiReadRequestMsg), NULL}, {NULL, NULL, 0, NULL}}; static FMField MpiReadReplyList[] = { {"TimeStep", "integer", sizeof(long), FMOffset(MpiReadReplyMsg, TimeStep)}, - {"StreamRS", "integer", sizeof(void *), - FMOffset(MpiReadReplyMsg, StreamRS)}, - {"DataLength", "integer", sizeof(size_t), - FMOffset(MpiReadReplyMsg, DataLength)}, - {"NotifyCondition", "integer", sizeof(int), - FMOffset(MpiReadReplyMsg, NotifyCondition)}, - {"MpiPortName", "string", sizeof(char *), - FMOffset(MpiReadReplyMsg, MpiPortName)}, + {"StreamRS", "integer", sizeof(void *), FMOffset(MpiReadReplyMsg, StreamRS)}, + {"DataLength", "integer", sizeof(size_t), FMOffset(MpiReadReplyMsg, DataLength)}, + {"NotifyCondition", "integer", sizeof(int), FMOffset(MpiReadReplyMsg, NotifyCondition)}, + {"MpiPortName", "string", sizeof(char *), FMOffset(MpiReadReplyMsg, MpiPortName)}, {"Data", "char[DataLength]", sizeof(char), FMOffset(MpiReadReplyMsg, Data)}, {NULL, NULL, 0, 0}}; @@ -217,37 +207,33 @@ static FMStructDescRec MpiReadReplyStructs[] = { {NULL, NULL, 0, NULL}}; static FMField MpiReaderContactList[] = { - {"ContactString", "char[" MACRO_TO_STR(MPI_DP_CONTACT_STRING_LEN) "]", - sizeof(char), FMOffset(MpiReaderContactInfo, ContactString)}, - {"reader_ID", "integer", sizeof(void *), - FMOffset(MpiReaderContactInfo, StreamRS)}, + {"ContactString", "char[" MACRO_TO_STR(MPI_DP_CONTACT_STRING_LEN) "]", sizeof(char), + FMOffset(MpiReaderContactInfo, ContactString)}, + {"reader_ID", "integer", sizeof(void *), FMOffset(MpiReaderContactInfo, StreamRS)}, {NULL, NULL, 0, 0}}; static FMStructDescRec MpiReaderContactStructs[] = { - {"MpiReaderContactInfo", MpiReaderContactList, - sizeof(struct _MpiReaderContactInfo), NULL}, + {"MpiReaderContactInfo", MpiReaderContactList, sizeof(struct _MpiReaderContactInfo), NULL}, {NULL, NULL, 0, NULL}}; static FMField MpiWriterContactList[] = { - {"ContactString", "char[" MACRO_TO_STR(MPI_DP_CONTACT_STRING_LEN) "]", - sizeof(char), FMOffset(MpiWriterContactInfo, ContactString)}, - {"writer_ID", "integer", sizeof(void *), - FMOffset(MpiWriterContactInfo, StreamWPR)}, + {"ContactString", "char[" MACRO_TO_STR(MPI_DP_CONTACT_STRING_LEN) "]", sizeof(char), + FMOffset(MpiWriterContactInfo, ContactString)}, + {"writer_ID", "integer", sizeof(void *), FMOffset(MpiWriterContactInfo, StreamWPR)}, {"PID", "integer", sizeof(int), FMOffset(MpiWriterContactInfo, PID)}, {NULL, NULL, 0, 0}}; static FMStructDescRec MpiWriterContactStructs[] = { - {"MpiWriterContactInfo", MpiWriterContactList, - sizeof(struct _MpiWriterContactInfo), NULL}, + {"MpiWriterContactInfo", MpiWriterContactList, sizeof(struct _MpiWriterContactInfo), NULL}, {NULL, NULL, 0, NULL}}; /*****Internal functions*****************************************************/ -static void MpiReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_Data, attr_list attrs); +static void MpiReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, + attr_list attrs); -static void MpiReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_Data, attr_list attrs); +static void MpiReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, + attr_list attrs); /** * Initialize MPI in the mode that it is required for MPI_DP to work. @@ -296,10 +282,9 @@ static void MpiInitialize() * is an FFS format description. See * https://www.cc.gatech.edu/systems/projects/FFS/.) */ -static DP_RS_Stream MpiInitReader(CP_Services Svcs, void *CP_Stream, - void **ReaderContactInfoPtr, - struct _SstParams *Params, - attr_list WriterContact, SstStats Stats) +static DP_RS_Stream MpiInitReader(CP_Services Svcs, void *CP_Stream, void **ReaderContactInfoPtr, + struct _SstParams *Params, attr_list WriterContact, + SstStats Stats) { pthread_once(&OnceMpiInitializer, MpiInitialize); @@ -320,14 +305,13 @@ static DP_RS_Stream MpiInitReader(CP_Services Svcs, void *CP_Stream, CMregister_handler(F, MpiReadReplyHandler, Svcs); /* Generate Contact info */ - snprintf(Stream->MyContactInfo.ContactString, MPI_DP_CONTACT_STRING_LEN, - "Reader Rank %d", Stream->Stream.Rank); + snprintf(Stream->MyContactInfo.ContactString, MPI_DP_CONTACT_STRING_LEN, "Reader Rank %d", + Stream->Stream.Rank); Stream->MyContactInfo.StreamRS = Stream; *ReaderContactInfoPtr = &Stream->MyContactInfo; Svcs->verbose(Stream->Stream.CP_Stream, DPTraceVerbose, - "MPI dataplane reader initialized, reader rank %d\n", - Stream->Stream.Rank); + "MPI dataplane reader initialized, reader rank %d\n", Stream->Stream.Rank); return Stream; } @@ -340,9 +324,8 @@ static DP_RS_Stream MpiInitReader(CP_Services Svcs, void *CP_Stream, * initialize a new writer-side data plane. This does *not* include creating * contact information per se. That can be put off until InitWriterPerReader(). */ -static DP_WS_Stream MpiInitWriter(CP_Services Svcs, void *CP_Stream, - struct _SstParams *Params, attr_list DPAttrs, - SstStats Stats) +static DP_WS_Stream MpiInitWriter(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params, + attr_list DPAttrs, SstStats Stats) { pthread_once(&OnceMpiInitializer, MpiInitialize); @@ -373,8 +356,7 @@ static DP_WS_Stream MpiInitWriter(CP_Services Svcs, void *CP_Stream, /* * register read reply message structure so we can send later */ Stream->ReadReplyFormat = CMregister_format(cm, MpiReadReplyStructs); - Svcs->verbose(CP_Stream, DPTraceVerbose, - "MpiInitWriter initialized addr=%p\n", Stream); + Svcs->verbose(CP_Stream, DPTraceVerbose, "MpiInitWriter initialized addr=%p\n", Stream); return (void *)Stream; } @@ -390,15 +372,14 @@ static DP_WS_Stream MpiInitWriter(CP_Services Svcs, void *CP_Stream, * DPInterface.WriterContactFormats. (This is an FFS format description. See * https://www.cc.gatech.edu/systems/projects/FFS/.) */ -static DP_WSR_Stream -MpiInitWriterPerReader(CP_Services Svcs, DP_WS_Stream WS_Stream_v, - int readerCohortSize, CP_PeerCohort PeerCohort, - void **providedReaderInfo_v, void **WriterContactInfoPtr) +static DP_WSR_Stream MpiInitWriterPerReader(CP_Services Svcs, DP_WS_Stream WS_Stream_v, + int readerCohortSize, CP_PeerCohort PeerCohort, + void **providedReaderInfo_v, + void **WriterContactInfoPtr) { MpiStreamWR StreamWR = (MpiStreamWR)WS_Stream_v; MpiStreamWPR StreamWPR = calloc(sizeof(struct _MpiStreamWPR), 1); - MpiReaderContactInfo *providedReaderInfo = - (MpiReaderContactInfo *)providedReaderInfo_v; + MpiReaderContactInfo *providedReaderInfo = (MpiReaderContactInfo *)providedReaderInfo_v; MPI_Open_port(MPI_INFO_NULL, StreamWPR->MpiPortName); @@ -410,8 +391,7 @@ MpiInitWriterPerReader(CP_Services Svcs, DP_WS_Stream WS_Stream_v, "MPI dataplane WriterPerReader to be initialized\n"); /* * Copy of writer contact information (original will not be preserved) */ - StreamWPR->CohortReaderInfo = - malloc(sizeof(struct _MpiReaderContactInfo) * readerCohortSize); + StreamWPR->CohortReaderInfo = malloc(sizeof(struct _MpiReaderContactInfo) * readerCohortSize); StreamWPR->CohortMpiComms = malloc(sizeof(MPI_Comm) * readerCohortSize); for (int i = 0; i < readerCohortSize; i++) { @@ -446,22 +426,18 @@ MpiInitWriterPerReader(CP_Services Svcs, DP_WS_Stream WS_Stream_v, * function recieves the WriterContactInfo created at MpiInitWriterPerReader in * providedWriterInfo_v argument. */ -static void MpiProvideWriterDataToReader(CP_Services Svcs, - DP_RS_Stream RS_Stream_v, - int writerCohortSize, - CP_PeerCohort PeerCohort, +static void MpiProvideWriterDataToReader(CP_Services Svcs, DP_RS_Stream RS_Stream_v, + int writerCohortSize, CP_PeerCohort PeerCohort, void **providedWriterInfo_v) { MpiStreamRD StreamRS = (MpiStreamRD)RS_Stream_v; - MpiWriterContactInfo *providedWriterInfo = - (MpiWriterContactInfo *)providedWriterInfo_v; + MpiWriterContactInfo *providedWriterInfo = (MpiWriterContactInfo *)providedWriterInfo_v; StreamRS->Link.PeerCohort = PeerCohort; StreamRS->Link.CohortSize = writerCohortSize; /* * Copy of writer contact information (original will not be preserved) */ - StreamRS->CohortWriterInfo = - malloc(sizeof(struct _MpiWriterContactInfo) * writerCohortSize); + StreamRS->CohortWriterInfo = malloc(sizeof(struct _MpiWriterContactInfo) * writerCohortSize); StreamRS->CohortMpiComms = malloc(sizeof(MPI_Comm) * writerCohortSize); for (int i = 0; i < writerCohortSize; i++) { @@ -509,10 +485,8 @@ static char *LoadTimeStep(MpiStreamWR Stream, long TimeStep) * call returns. The void* return value will later be passed to a * WaitForCompletion call and should represent a completion handle. */ -static void *MpiReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, - int Rank, long TimeStep, size_t Offset, - size_t Length, void *Buffer, - void *DP_TimeStepInfo) +static void *MpiReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, int Rank, long TimeStep, + size_t Offset, size_t Length, void *Buffer, void *DP_TimeStepInfo) { /* DP_RS_Stream is the return from InitReader */ MpiStreamRD Stream = (MpiStreamRD)Stream_v; @@ -521,36 +495,32 @@ static void *MpiReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, MpiWriterContactInfo TargetContact = &Stream->CohortWriterInfo[Rank]; - Svcs->verbose( - Stream->Stream.CP_Stream, DPTraceVerbose, - "Reader (rank %d) requesting to read remote memory for TimeStep %d " - "from Rank %d, StreamWPR =%p, Offset=%d, Length=%d\n", - Stream->Stream.Rank, TimeStep, Rank, TargetContact->StreamWPR, Offset, - Length); + Svcs->verbose(Stream->Stream.CP_Stream, DPTraceVerbose, + "Reader (rank %d) requesting to read remote memory for TimeStep %d " + "from Rank %d, StreamWPR =%p, Offset=%d, Length=%d\n", + Stream->Stream.Rank, TimeStep, Rank, TargetContact->StreamWPR, Offset, Length); /* send request to appropriate writer */ - struct _MpiReadRequestMsg ReadRequestMsg = { - .Length = Length, - .NotifyCondition = CMCondition_get(cm, NULL), - .Offset = Offset, - .RequestingRank = Stream->Stream.Rank, - .StreamRS = Stream, - .StreamWPR = TargetContact->StreamWPR, - .TimeStep = TimeStep}; + struct _MpiReadRequestMsg ReadRequestMsg = {.Length = Length, + .NotifyCondition = CMCondition_get(cm, NULL), + .Offset = Offset, + .RequestingRank = Stream->Stream.Rank, + .StreamRS = Stream, + .StreamWPR = TargetContact->StreamWPR, + .TimeStep = TimeStep}; ret->ReadRequest = ReadRequestMsg; ret->Buffer = Buffer; ret->cm = cm; ret->CPStream = Stream->Stream.CP_Stream; ret->DestinationRank = Rank; - ret->CommType = (TargetContact->PID == Stream->Stream.PID) ? MPI_DP_LOCAL - : MPI_DP_REMOTE; + ret->CommType = (TargetContact->PID == Stream->Stream.PID) ? MPI_DP_LOCAL : MPI_DP_REMOTE; if (ret->CommType == MPI_DP_REMOTE) { CMCondition_set_client_data(cm, ReadRequestMsg.NotifyCondition, ret); - Svcs->sendToPeer(Stream->Stream.CP_Stream, Stream->Link.PeerCohort, - Rank, Stream->ReadRequestFormat, &ReadRequestMsg); + Svcs->sendToPeer(Stream->Stream.CP_Stream, Stream->Link.PeerCohort, Rank, + Stream->ReadRequestFormat, &ReadRequestMsg); Svcs->verbose(Stream->Stream.CP_Stream, DPTraceVerbose, "ReadRemoteMemory: Send to server, Link.CohortSize=%d\n", @@ -578,23 +548,20 @@ static int MpiWaitForCompletion(CP_Services Svcs, void *Handle_v) const struct _MpiReadRequestMsg Request = Handle->ReadRequest; int Ret = 0; - Svcs->verbose( - Handle->CPStream, DPTraceVerbose, - "Waiting for completion of memory read to rank %d, condition %d," - "timestep=%d, is_local=%d\n", - Handle->DestinationRank, Request.NotifyCondition, Request.TimeStep, - Handle->CommType); + Svcs->verbose(Handle->CPStream, DPTraceVerbose, + "Waiting for completion of memory read to rank %d, condition %d," + "timestep=%d, is_local=%d\n", + Handle->DestinationRank, Request.NotifyCondition, Request.TimeStep, + Handle->CommType); // If possible, read locally if (Handle->CommType == MPI_DP_LOCAL) { - const MpiStreamWR StreamWR = - ((MpiStreamWPR)Request.StreamWPR)->StreamWR; + const MpiStreamWR StreamWR = ((MpiStreamWPR)Request.StreamWPR)->StreamWR; char *LoadedBuffer = LoadTimeStep(StreamWR, Request.TimeStep); if (LoadedBuffer) { - memcpy(Handle->Buffer, LoadedBuffer + Request.Offset, - Request.Length); + memcpy(Handle->Buffer, LoadedBuffer + Request.Offset, Request.Length); } Ret = (LoadedBuffer != NULL); } @@ -610,17 +577,15 @@ static int MpiWaitForCompletion(CP_Services Svcs, void *Handle_v) Svcs->verbose(Handle->CPStream, DPTraceVerbose, "Memory read to rank %d with condition %d and" "length %zu has completed\n", - Handle->DestinationRank, Request.NotifyCondition, - Request.Length); + Handle->DestinationRank, Request.NotifyCondition, Request.Length); } else { - Svcs->verbose( - Handle->CPStream, DPTraceVerbose, - "Remote memory read to rank %d with condition %d has FAILED" - "because of " - "writer failure\n", - Handle->DestinationRank, Request.NotifyCondition); + Svcs->verbose(Handle->CPStream, DPTraceVerbose, + "Remote memory read to rank %d with condition %d has FAILED" + "because of " + "writer failure\n", + Handle->DestinationRank, Request.NotifyCondition); } free(Handle); @@ -634,8 +599,8 @@ static int MpiWaitForCompletion(CP_Services Svcs, void *Handle_v) * is message is sent from MpiReadRemoteMemory. This function should noisily * fail if the requested timestep is not found. */ -static void MpiReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_Data, attr_list attrs) +static void MpiReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, + attr_list attrs) { MpiReadRequestMsg ReadRequestMsg = (MpiReadRequestMsg)msg_v; MpiStreamWPR StreamWPR = ReadRequestMsg->StreamWPR; @@ -645,8 +610,8 @@ static void MpiReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, Svcs->verbose(StreamWR->Stream.CP_Stream, DPTraceVerbose, "MpiReadRequestHandler:" "read request from reader=%d,ts=%d,off=%d,len=%d\n", - ReadRequestMsg->RequestingRank, ReadRequestMsg->TimeStep, - ReadRequestMsg->Offset, ReadRequestMsg->Length); + ReadRequestMsg->RequestingRank, ReadRequestMsg->TimeStep, ReadRequestMsg->Offset, + ReadRequestMsg->Length); PERFSTUBS_TIMER_START_FUNC(timer); @@ -656,8 +621,7 @@ static void MpiReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, { PERFSTUBS_TIMER_STOP_FUNC(timer); Svcs->verbose(StreamWR->Stream.CP_Stream, DPPerStepVerbose, - "Failed to read TimeStep %ld, not found\n", - ReadRequestMsg->TimeStep); + "Failed to read TimeStep %ld, not found\n", ReadRequestMsg->TimeStep); return; } @@ -669,35 +633,30 @@ static void MpiReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, .MpiPortName = StreamWPR->MpiPortName, }; - Svcs->verbose( - StreamWR->Stream.CP_Stream, DPTraceVerbose, - "MpiReadRequestHandler: Replying reader=%d with MPI port name=%s\n", - ReadRequestMsg->RequestingRank, StreamWPR->MpiPortName); + Svcs->verbose(StreamWR->Stream.CP_Stream, DPTraceVerbose, + "MpiReadRequestHandler: Replying reader=%d with MPI port name=%s\n", + ReadRequestMsg->RequestingRank, StreamWPR->MpiPortName); Svcs->sendToPeer(StreamWR->Stream.CP_Stream, StreamWPR->Link.PeerCohort, - ReadRequestMsg->RequestingRank, StreamWR->ReadReplyFormat, - &ReadReplyMsg); + ReadRequestMsg->RequestingRank, StreamWR->ReadReplyFormat, &ReadReplyMsg); // Send the actual Data using MPI MPI_Comm *comm = &StreamWPR->CohortMpiComms[ReadRequestMsg->RequestingRank]; MPI_Errhandler worldErrHandler; MPI_Comm_get_errhandler(MPI_COMM_WORLD, &worldErrHandler); MPI_Comm_set_errhandler(MPI_COMM_WORLD, MPI_ERRORS_RETURN); - int ret = - MPI_Send(RequestedData + ReadRequestMsg->Offset, ReadRequestMsg->Length, - MPI_CHAR, 0, ReadRequestMsg->NotifyCondition, *comm); + int ret = MPI_Send(RequestedData + ReadRequestMsg->Offset, ReadRequestMsg->Length, MPI_CHAR, 0, + ReadRequestMsg->NotifyCondition, *comm); MPI_Comm_set_errhandler(MPI_COMM_WORLD, worldErrHandler); if (ret != MPI_SUCCESS) { - MPI_Comm_accept(StreamWPR->MpiPortName, MPI_INFO_NULL, 0, MPI_COMM_SELF, - comm); - Svcs->verbose( - StreamWR->Stream.CP_Stream, DPTraceVerbose, - "MpiReadRequestHandler: Accepted client, Link.CohortSize=%d\n", - StreamWPR->Link.CohortSize); - MPI_Send(RequestedData + ReadRequestMsg->Offset, ReadRequestMsg->Length, - MPI_CHAR, 0, ReadRequestMsg->NotifyCondition, *comm); + MPI_Comm_accept(StreamWPR->MpiPortName, MPI_INFO_NULL, 0, MPI_COMM_SELF, comm); + Svcs->verbose(StreamWR->Stream.CP_Stream, DPTraceVerbose, + "MpiReadRequestHandler: Accepted client, Link.CohortSize=%d\n", + StreamWPR->Link.CohortSize); + MPI_Send(RequestedData + ReadRequestMsg->Offset, ReadRequestMsg->Length, MPI_CHAR, 0, + ReadRequestMsg->NotifyCondition, *comm); } PERFSTUBS_TIMER_STOP_FUNC(timer); @@ -708,21 +667,18 @@ static void MpiReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, * * This is invoked at the Reader side when a reply is ready to be read. */ -static void MpiReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, - void *client_Data, attr_list attrs) +static void MpiReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, + attr_list attrs) { PERFSTUBS_TIMER_START_FUNC(timer); MpiReadReplyMsg ReadReplyMsg = (MpiReadReplyMsg)msg_v; MpiStreamRD StreamRS = ReadReplyMsg->StreamRS; CP_Services Svcs = (CP_Services)client_Data; - MpiCompletionHandle Handle = - CMCondition_get_client_data(cm, ReadReplyMsg->NotifyCondition); + MpiCompletionHandle Handle = CMCondition_get_client_data(cm, ReadReplyMsg->NotifyCondition); - Svcs->verbose( - StreamRS->Stream.CP_Stream, DPTraceVerbose, - "MpiReadReplyHandler: Read recv from rank=%d,condition=%d,size=%d\n", - Handle->DestinationRank, ReadReplyMsg->NotifyCondition, - ReadReplyMsg->DataLength); + Svcs->verbose(StreamRS->Stream.CP_Stream, DPTraceVerbose, + "MpiReadReplyHandler: Read recv from rank=%d,condition=%d,size=%d\n", + Handle->DestinationRank, ReadReplyMsg->NotifyCondition, ReadReplyMsg->DataLength); MPI_Comm comm = StreamRS->CohortMpiComms[Handle->DestinationRank]; @@ -735,8 +691,7 @@ static void MpiReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, if (ret != MPI_SUCCESS) { - MPI_Comm_connect(ReadReplyMsg->MpiPortName, MPI_INFO_NULL, 0, - MPI_COMM_SELF, &comm); + MPI_Comm_connect(ReadReplyMsg->MpiPortName, MPI_INFO_NULL, 0, MPI_COMM_SELF, &comm); Svcs->verbose(StreamRS->Stream.CP_Stream, DPTraceVerbose, "MpiReadReplyHandler: Connecting to MPI Server\n"); @@ -767,8 +722,7 @@ static void MpiReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, * DPInterface.TimeStepInfoFormats. * */ -static void MpiProvideTimeStep(CP_Services Svcs, DP_WS_Stream Stream_v, - struct _SstData *Data, +static void MpiProvideTimeStep(CP_Services Svcs, DP_WS_Stream Stream_v, struct _SstData *Data, struct _SstData *LocalMetadata, long TimeStep, void **TimeStepInfoPtr) { @@ -791,13 +745,11 @@ static void MpiProvideTimeStep(CP_Services Svcs, DP_WS_Stream Stream_v, * plane that a particular timestep is no longer required and any resources * devoted to serving it can be released. */ -static void MpiReleaseTimeStep(CP_Services Svcs, DP_WS_Stream Stream_v, - long TimeStep) +static void MpiReleaseTimeStep(CP_Services Svcs, DP_WS_Stream Stream_v, long TimeStep) { MpiStreamWR Stream = (MpiStreamWR)Stream_v; - Svcs->verbose(Stream->Stream.CP_Stream, DPTraceVerbose, - "Releasing timestep %ld\n", TimeStep); + Svcs->verbose(Stream->Stream.CP_Stream, DPTraceVerbose, "Releasing timestep %ld\n", TimeStep); pthread_rwlock_rdlock(&Stream->LockTS); TimeStepsEntry EntryToDelete = STAILQ_FIRST(&Stream->TimeSteps); @@ -826,8 +778,7 @@ static void MpiReleaseTimeStep(CP_Services Svcs, DP_WS_Stream Stream_v, if (EntryToDelete) { pthread_rwlock_wrlock(&Stream->LockTS); - STAILQ_REMOVE(&Stream->TimeSteps, EntryToDelete, _TimeStepsEntry, - entries); + STAILQ_REMOVE(&Stream->TimeSteps, EntryToDelete, _TimeStepsEntry, entries); pthread_rwlock_unlock(&Stream->LockTS); } } @@ -845,8 +796,7 @@ static void MpiReleaseTimeStep(CP_Services Svcs, DP_WS_Stream Stream_v, * When MPI is initialized with MPI_THREAD_MULTIPLE this data-plane should have * highest priority */ -static int MpiGetPriority(CP_Services Svcs, void *CP_Stream, - struct _SstParams *Params) +static int MpiGetPriority(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params) { #if defined(MPICH) // Only enabled when MPI_THREAD_MULTIPLE and using MPICH @@ -864,8 +814,7 @@ static int MpiGetPriority(CP_Services Svcs, void *CP_Stream, /** * MpiNotifyConnFailure */ -static void MpiNotifyConnFailure(CP_Services Svcs, DP_RS_Stream Stream_v, - int FailedPeerRank) +static void MpiNotifyConnFailure(CP_Services Svcs, DP_RS_Stream Stream_v, int FailedPeerRank) { /* DP_RS_Stream is the return from InitReader */ MpiStreamRD Stream = (MpiStreamRD)Stream_v; @@ -882,8 +831,7 @@ static void MpiNotifyConnFailure(CP_Services Svcs, DP_RS_Stream Stream_v, * This is called whenever a reader disconnect from a writer. This function * also removes the StreamWPR from its own StreamWR. */ -static void MpiDestroyWriterPerReader(CP_Services Svcs, - DP_WSR_Stream WSR_Stream_v) +static void MpiDestroyWriterPerReader(CP_Services Svcs, DP_WSR_Stream WSR_Stream_v) { MpiStreamWPR StreamWPR = (MpiStreamWPR)WSR_Stream_v; MpiStreamWR StreamWR = StreamWPR->StreamWR; diff --git a/source/adios2/toolkit/sst/dp/rdma_dp.c b/source/adios2/toolkit/sst/dp/rdma_dp.c index 276fa6cf4c..e61c6f5f3f 100644 --- a/source/adios2/toolkit/sst/dp/rdma_dp.c +++ b/source/adios2/toolkit/sst/dp/rdma_dp.c @@ -112,8 +112,8 @@ struct fabric_state * plane would replace one or both of these with RDMA functionality. */ -static void init_fabric(struct fabric_state *fabric, struct _SstParams *Params, - CP_Services Svcs, void *CP_Stream) +static void init_fabric(struct fabric_state *fabric, struct _SstParams *Params, CP_Services Svcs, + void *CP_Stream) { struct fi_info *hints, *info, *originfo, *useinfo; struct fi_av_attr av_attr = {FI_AV_UNSPEC}; @@ -122,10 +122,10 @@ static void init_fabric(struct fabric_state *fabric, struct _SstParams *Params, int result; hints = fi_allocinfo(); - hints->caps = FI_MSG | FI_SEND | FI_RECV | FI_REMOTE_READ | - FI_REMOTE_WRITE | FI_RMA | FI_READ | FI_WRITE; - hints->mode = FI_CONTEXT | FI_LOCAL_MR | FI_CONTEXT2 | FI_MSG_PREFIX | - FI_ASYNC_IOV | FI_RX_CQ_DATA; + hints->caps = + FI_MSG | FI_SEND | FI_RECV | FI_REMOTE_READ | FI_REMOTE_WRITE | FI_RMA | FI_READ | FI_WRITE; + hints->mode = + FI_CONTEXT | FI_LOCAL_MR | FI_CONTEXT2 | FI_MSG_PREFIX | FI_ASYNC_IOV | FI_RX_CQ_DATA; hints->domain_attr->mr_mode = FI_MR_BASIC; hints->domain_attr->control_progress = FI_PROGRESS_AUTO; hints->domain_attr->data_progress = FI_PROGRESS_AUTO; @@ -162,16 +162,13 @@ static void init_fabric(struct fabric_state *fabric, struct _SstParams *Params, if (ifname && strcmp(ifname, domain_name) == 0) { - Svcs->verbose(CP_Stream, DPTraceVerbose, - "using interface set by FABRIC_IFACE.\n"); + Svcs->verbose(CP_Stream, DPTraceVerbose, "using interface set by FABRIC_IFACE.\n"); useinfo = info; break; } if ((((strcmp(prov_name, "verbs") == 0) && info->src_addr) || - (strcmp(prov_name, "gni") == 0) || - (strcmp(prov_name, "psm2") == 0)) && - (!useinfo || !ifname || - (strcmp(useinfo->domain_attr->name, ifname) != 0))) + (strcmp(prov_name, "gni") == 0) || (strcmp(prov_name, "psm2") == 0)) && + (!useinfo || !ifname || (strcmp(useinfo->domain_attr->name, ifname) != 0))) { Svcs->verbose(CP_Stream, DPTraceVerbose, "seeing candidate fabric %s, will use this unless we " @@ -179,8 +176,8 @@ static void init_fabric(struct fabric_state *fabric, struct _SstParams *Params, prov_name); useinfo = info; } - else if (((strstr(prov_name, "verbs") && info->src_addr) || - strstr(prov_name, "gni") || strstr(prov_name, "psm2")) && + else if (((strstr(prov_name, "verbs") && info->src_addr) || strstr(prov_name, "gni") || + strstr(prov_name, "psm2")) && !useinfo) { Svcs->verbose(CP_Stream, DPTraceVerbose, @@ -191,12 +188,11 @@ static void init_fabric(struct fabric_state *fabric, struct _SstParams *Params, } else { - Svcs->verbose( - CP_Stream, DPTraceVerbose, - "ignoring fabric %s because it's not of a supported type. It " - "may work to force this fabric to be used by setting " - "FABRIC_IFACE to %s, but it may not be stable or performant.\n", - prov_name, domain_name); + Svcs->verbose(CP_Stream, DPTraceVerbose, + "ignoring fabric %s because it's not of a supported type. It " + "may work to force this fabric to be used by setting " + "FABRIC_IFACE to %s, but it may not be stable or performant.\n", + prov_name, domain_name); } info = info->next; } @@ -205,13 +201,12 @@ static void init_fabric(struct fabric_state *fabric, struct _SstParams *Params, if (!info) { - Svcs->verbose( - CP_Stream, DPCriticalVerbose, - "none of the usable system fabrics are supported high speed " - "interfaces (verbs, gni, psm2.) To use a compatible fabric that is " - "being ignored (probably sockets), set the environment variable " - "FABRIC_IFACE to the interface name. Check the output of fi_info " - "to troubleshoot this message.\n"); + Svcs->verbose(CP_Stream, DPCriticalVerbose, + "none of the usable system fabrics are supported high speed " + "interfaces (verbs, gni, psm2.) To use a compatible fabric that is " + "being ignored (probably sockets), set the environment variable " + "FABRIC_IFACE to the interface name. Check the output of fi_info " + "to troubleshoot this message.\n"); fabric->info = NULL; return; } @@ -269,8 +264,7 @@ static void init_fabric(struct fabric_state *fabric, struct _SstParams *Params, fabric->info = fi_dupinfo(info); if (!fabric->info) { - Svcs->verbose(CP_Stream, DPCriticalVerbose, - "copying the fabric info failed.\n"); + Svcs->verbose(CP_Stream, DPCriticalVerbose, "copying the fabric info failed.\n"); return; } @@ -281,23 +275,20 @@ static void init_fabric(struct fabric_state *fabric, struct _SstParams *Params, result = fi_fabric(info->fabric_attr, &fabric->fabric, fabric->ctx); if (result != FI_SUCCESS) { - Svcs->verbose( - CP_Stream, DPCriticalVerbose, - "opening fabric access failed with %d (%s). This is fatal.\n", - result, fi_strerror(result)); + Svcs->verbose(CP_Stream, DPCriticalVerbose, + "opening fabric access failed with %d (%s). This is fatal.\n", result, + fi_strerror(result)); return; } result = fi_domain(fabric->fabric, info, &fabric->domain, fabric->ctx); if (result != FI_SUCCESS) { Svcs->verbose(CP_Stream, DPCriticalVerbose, - "accessing domain failed with %d (%s). This is fatal.\n", - result, fi_strerror(result)); - fprintf( - stderr, - "SST RDMA Dataplane failure. fi_domain() has failed, which may " - "mean that libfabric is defaulting to the wrong interface. Check " - "your FABRIC_IFACE environment variable (or specify one).\n"); + "accessing domain failed with %d (%s). This is fatal.\n", result, + fi_strerror(result)); + fprintf(stderr, "SST RDMA Dataplane failure. fi_domain() has failed, which may " + "mean that libfabric is defaulting to the wrong interface. Check " + "your FABRIC_IFACE environment variable (or specify one).\n"); return; } info->ep_attr->type = FI_EP_RDM; @@ -305,8 +296,8 @@ static void init_fabric(struct fabric_state *fabric, struct _SstParams *Params, if (result != FI_SUCCESS || !fabric->signal) { Svcs->verbose(CP_Stream, DPCriticalVerbose, - "opening endpoint failed with %d (%s). This is fatal.\n", - result, fi_strerror(result)); + "opening endpoint failed with %d (%s). This is fatal.\n", result, + fi_strerror(result)); return; } @@ -336,19 +327,16 @@ static void init_fabric(struct fabric_state *fabric, struct _SstParams *Params, cq_attr.format = FI_CQ_FORMAT_DATA; cq_attr.wait_obj = FI_WAIT_UNSPEC; cq_attr.wait_cond = FI_CQ_COND_NONE; - result = - fi_cq_open(fabric->domain, &cq_attr, &fabric->cq_signal, fabric->ctx); + result = fi_cq_open(fabric->domain, &cq_attr, &fabric->cq_signal, fabric->ctx); if (result != FI_SUCCESS) { - Svcs->verbose( - CP_Stream, DPCriticalVerbose, - "opening completion queue failed with %d (%s). This is fatal.\n", - result, fi_strerror(result)); + Svcs->verbose(CP_Stream, DPCriticalVerbose, + "opening completion queue failed with %d (%s). This is fatal.\n", result, + fi_strerror(result)); return; } - result = fi_ep_bind(fabric->signal, &fabric->cq_signal->fid, - FI_TRANSMIT | FI_RECV); + result = fi_ep_bind(fabric->signal, &fabric->cq_signal->fid, FI_TRANSMIT | FI_RECV); if (result != FI_SUCCESS) { Svcs->verbose(CP_Stream, DPCriticalVerbose, @@ -362,16 +350,15 @@ static void init_fabric(struct fabric_state *fabric, struct _SstParams *Params, if (result != FI_SUCCESS) { Svcs->verbose(CP_Stream, DPCriticalVerbose, - "enable endpoint, failed with %d (%s). This is fatal.\n", - result, fi_strerror(result)); + "enable endpoint, failed with %d (%s). This is fatal.\n", result, + fi_strerror(result)); return; } fi_freeinfo(originfo); } -static void fini_fabric(struct fabric_state *fabric, CP_Services Svcs, - void *CP_Stream) +static void fini_fabric(struct fabric_state *fabric, CP_Services Svcs, void *CP_Stream) { int res; @@ -383,33 +370,29 @@ static void fini_fabric(struct fabric_state *fabric, CP_Services Svcs, if (res != FI_SUCCESS) { - Svcs->verbose(CP_Stream, DPCriticalVerbose, - "could not close ep, failed with %d (%s).\n", res, - fi_strerror(res)); + Svcs->verbose(CP_Stream, DPCriticalVerbose, "could not close ep, failed with %d (%s).\n", + res, fi_strerror(res)); return; } res = fi_close((struct fid *)fabric->cq_signal); if (res != FI_SUCCESS) { - Svcs->verbose(CP_Stream, DPCriticalVerbose, - "could not close cq, failed with %d (%s).\n", res, - fi_strerror(res)); + Svcs->verbose(CP_Stream, DPCriticalVerbose, "could not close cq, failed with %d (%s).\n", + res, fi_strerror(res)); } res = fi_close((struct fid *)fabric->av); if (res != FI_SUCCESS) { - Svcs->verbose(CP_Stream, DPCriticalVerbose, - "could not close av, failed with %d (%s).\n", res, - fi_strerror(res)); + Svcs->verbose(CP_Stream, DPCriticalVerbose, "could not close av, failed with %d (%s).\n", + res, fi_strerror(res)); } res = fi_close((struct fid *)fabric->domain); if (res != FI_SUCCESS) { Svcs->verbose(CP_Stream, DPCriticalVerbose, - "could not close domain, failed with %d (%s).\n", res, - fi_strerror(res)); + "could not close domain, failed with %d (%s).\n", res, fi_strerror(res)); return; } @@ -417,8 +400,7 @@ static void fini_fabric(struct fabric_state *fabric, CP_Services Svcs, if (res != FI_SUCCESS) { Svcs->verbose(CP_Stream, DPCriticalVerbose, - "could not close fabric, failed with %d (%s).\n", res, - fi_strerror(res)); + "could not close fabric, failed with %d (%s).\n", res, fi_strerror(res)); return; } @@ -617,15 +599,13 @@ static TimestepList GetStep(Rdma_WS_Stream Stream, long Timestep) return (Step); } -static DP_RS_Stream RdmaInitReader(CP_Services Svcs, void *CP_Stream, - void **ReaderContactInfoPtr, - struct _SstParams *Params, - attr_list WriterContact, SstStats Stats) +static DP_RS_Stream RdmaInitReader(CP_Services Svcs, void *CP_Stream, void **ReaderContactInfoPtr, + struct _SstParams *Params, attr_list WriterContact, + SstStats Stats) { Rdma_RS_Stream Stream = malloc(sizeof(struct _Rdma_RS_Stream)); SMPI_Comm comm = Svcs->getMPIComm(CP_Stream); - RdmaReaderContactInfo ContactInfo = - malloc(sizeof(struct _RdmaReaderContactInfo)); + RdmaReaderContactInfo ContactInfo = malloc(sizeof(struct _RdmaReaderContactInfo)); FabricState Fabric; char *PreloadEnv = NULL; @@ -652,9 +632,8 @@ static DP_RS_Stream RdmaInitReader(CP_Services Svcs, void *CP_Stream, } PreloadEnv = getenv("SST_DP_PRELOAD"); - if (PreloadEnv && - (strcmp(PreloadEnv, "1") == 0 || strcmp(PreloadEnv, "yes") == 0 || - strcmp(PreloadEnv, "Yes") == 0 || strcmp(PreloadEnv, "YES") == 0)) + if (PreloadEnv && (strcmp(PreloadEnv, "1") == 0 || strcmp(PreloadEnv, "yes") == 0 || + strcmp(PreloadEnv, "Yes") == 0 || strcmp(PreloadEnv, "YES") == 0)) { Svcs->verbose(CP_Stream, DPTraceVerbose, "making preload available in RDMA DP based on " @@ -668,11 +647,9 @@ static DP_RS_Stream RdmaInitReader(CP_Services Svcs, void *CP_Stream, #ifdef SST_HAVE_CRAY_DRC int attr_cred, try_left, rc; - if (!get_int_attr(WriterContact, attr_atom_from_string("RDMA_DRC_KEY"), - &attr_cred)) + if (!get_int_attr(WriterContact, attr_atom_from_string("RDMA_DRC_KEY"), &attr_cred)) { - Svcs->verbose(CP_Stream, DPCriticalVerbose, - "Didn't find DRC credential for Cray RDMA\n"); + Svcs->verbose(CP_Stream, DPCriticalVerbose, "Didn't find DRC credential for Cray RDMA\n"); return NULL; } Fabric->credential = attr_cred; @@ -687,14 +664,12 @@ static DP_RS_Stream RdmaInitReader(CP_Services Svcs, void *CP_Stream, if (rc != DRC_SUCCESS) { Svcs->verbose(CP_Stream, DPCriticalVerbose, - "Could not access DRC credential. Last failed with %d.\n", - rc); + "Could not access DRC credential. Last failed with %d.\n", rc); } Fabric->auth_key = malloc(sizeof(*Fabric->auth_key)); Fabric->auth_key->type = GNIX_AKT_RAW; - Fabric->auth_key->raw.protection_key = - drc_get_first_cookie(Fabric->drc_info); + Fabric->auth_key->raw.protection_key = drc_get_first_cookie(Fabric->drc_info); Svcs->verbose(CP_Stream, "Using protection key %08x.\n", DPSummaryVerbose, Fabric->auth_key->raw.protection_key); @@ -703,15 +678,13 @@ static DP_RS_Stream RdmaInitReader(CP_Services Svcs, void *CP_Stream, init_fabric(Stream->Fabric, Stream->Params, Svcs, CP_Stream); if (!Fabric->info) { - Svcs->verbose(CP_Stream, DPCriticalVerbose, - "Could not find a valid transport fabric.\n"); + Svcs->verbose(CP_Stream, DPCriticalVerbose, "Could not find a valid transport fabric.\n"); return NULL; } ContactInfo->Length = Fabric->info->src_addrlen; ContactInfo->Address = malloc(ContactInfo->Length); - fi_getname((fid_t)Fabric->signal, ContactInfo->Address, - &ContactInfo->Length); + fi_getname((fid_t)Fabric->signal, ContactInfo->Address, &ContactInfo->Length); Stream->PreloadStep = -1; Stream->ContactInfo = ContactInfo; @@ -736,24 +709,21 @@ static void RdmaReadPatternLocked(CP_Services Svcs, DP_WSR_Stream WSRStream_v, { if (WS_Stream->Rank == 0) { - Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, - "read pattern is locked\n"); + Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, "read pattern is locked\n"); } WSR_Stream->SelectLocked = EffectiveTimestep; WSR_Stream->Preload = 1; } else if (WS_Stream->Rank == 0) { - Svcs->verbose( - WS_Stream->CP_Stream, DPSummaryVerbose, - "RDMA dataplane is ignoring a read pattern lock notification " - "because preloading is disabled. Enable by setting the environment " - "variable SST_DP_PRELOAD to 'yes'\n"); + Svcs->verbose(WS_Stream->CP_Stream, DPSummaryVerbose, + "RDMA dataplane is ignoring a read pattern lock notification " + "because preloading is disabled. Enable by setting the environment " + "variable SST_DP_PRELOAD to 'yes'\n"); } } -static void RdmaWritePatternLocked(CP_Services Svcs, DP_RS_Stream Stream_v, - long EffectiveTimestep) +static void RdmaWritePatternLocked(CP_Services Svcs, DP_RS_Stream Stream_v, long EffectiveTimestep) { Rdma_RS_Stream Stream = (Rdma_RS_Stream)Stream_v; @@ -762,23 +732,20 @@ static void RdmaWritePatternLocked(CP_Services Svcs, DP_RS_Stream Stream_v, Stream->PreloadStep = EffectiveTimestep; if (Stream->Rank == 0) { - Svcs->verbose(Stream->CP_Stream, DPSummaryVerbose, - "write pattern is locked.\n"); + Svcs->verbose(Stream->CP_Stream, DPSummaryVerbose, "write pattern is locked.\n"); } } else if (Stream->Rank == 0) { - Svcs->verbose( - Stream->CP_Stream, DPSummaryVerbose, - "RDMA dataplane is ignoring a write pattern lock notification " - "because preloading is disabled. Enable by setting the environment " - "variable SST_DP_PRELOAD to 'yes'\n"); + Svcs->verbose(Stream->CP_Stream, DPSummaryVerbose, + "RDMA dataplane is ignoring a write pattern lock notification " + "because preloading is disabled. Enable by setting the environment " + "variable SST_DP_PRELOAD to 'yes'\n"); } } -static DP_WS_Stream RdmaInitWriter(CP_Services Svcs, void *CP_Stream, - struct _SstParams *Params, attr_list DPAttrs, - SstStats Stats) +static DP_WS_Stream RdmaInitWriter(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params, + attr_list DPAttrs, SstStats Stats) { Rdma_WS_Stream Stream = malloc(sizeof(struct _Rdma_WS_Stream)); SMPI_Comm comm = Svcs->getMPIComm(CP_Stream); @@ -790,9 +757,8 @@ static DP_WS_Stream RdmaInitWriter(CP_Services Svcs, void *CP_Stream, SMPI_Comm_rank(comm, &Stream->Rank); PreloadEnv = getenv("SST_DP_PRELOAD"); - if (PreloadEnv && - (strcmp(PreloadEnv, "1") == 0 || strcmp(PreloadEnv, "yes") == 0 || - strcmp(PreloadEnv, "Yes") == 0 || strcmp(PreloadEnv, "YES") == 0)) + if (PreloadEnv && (strcmp(PreloadEnv, "1") == 0 || strcmp(PreloadEnv, "yes") == 0 || + strcmp(PreloadEnv, "Yes") == 0 || strcmp(PreloadEnv, "YES") == 0)) { if (Stream->Rank == 0) { @@ -817,20 +783,17 @@ static DP_WS_Stream RdmaInitWriter(CP_Services Svcs, void *CP_Stream, if (rc != DRC_SUCCESS) { Svcs->verbose(CP_Stream, DPCriticalVerbose, - "Could not acquire DRC credential. Failed with %d.\n", - rc); + "Could not acquire DRC credential. Failed with %d.\n", rc); goto err_out; } else { - Svcs->verbose(CP_Stream, DPTraceVerbose, - "DRC acquired credential id %d.\n", + Svcs->verbose(CP_Stream, DPTraceVerbose, "DRC acquired credential id %d.\n", Fabric->credential); } } - SMPI_Bcast(&Fabric->credential, sizeof(Fabric->credential), SMPI_BYTE, 0, - comm); + SMPI_Bcast(&Fabric->credential, sizeof(Fabric->credential), SMPI_BYTE, 0, comm); try_left = DP_DRC_MAX_TRY; rc = drc_access(Fabric->credential, 0, &Fabric->drc_info); @@ -842,15 +805,13 @@ static DP_WS_Stream RdmaInitWriter(CP_Services Svcs, void *CP_Stream, if (rc != DRC_SUCCESS) { Svcs->verbose(CP_Stream, DPCriticalVerbose, - "Could not access DRC credential. Last failed with %d.\n", - rc); + "Could not access DRC credential. Last failed with %d.\n", rc); goto err_out; } Fabric->auth_key = malloc(sizeof(*Fabric->auth_key)); Fabric->auth_key->type = GNIX_AKT_RAW; - Fabric->auth_key->raw.protection_key = - drc_get_first_cookie(Fabric->drc_info); + Fabric->auth_key->raw.protection_key = drc_get_first_cookie(Fabric->drc_info); Svcs->verbose(CP_Stream, DPTraceVerbose, "Using protection key %08x.\n", Fabric->auth_key->raw.protection_key); long attr_cred = Fabric->credential; @@ -861,8 +822,7 @@ static DP_WS_Stream RdmaInitWriter(CP_Services Svcs, void *CP_Stream, Fabric = Stream->Fabric; if (!Fabric->info) { - Svcs->verbose(CP_Stream, DPTraceVerbose, - "Could not find a valid transport fabric.\n"); + Svcs->verbose(CP_Stream, DPTraceVerbose, "Could not find a valid transport fabric.\n"); goto err_out; } @@ -890,10 +850,8 @@ static DP_WS_Stream RdmaInitWriter(CP_Services Svcs, void *CP_Stream, return (NULL); } -static DP_WSR_Stream RdmaInitWriterPerReader(CP_Services Svcs, - DP_WS_Stream WS_Stream_v, - int readerCohortSize, - CP_PeerCohort PeerCohort, +static DP_WSR_Stream RdmaInitWriterPerReader(CP_Services Svcs, DP_WS_Stream WS_Stream_v, + int readerCohortSize, CP_PeerCohort PeerCohort, void **providedReaderInfo_v, void **WriterContactInfoPtr) { @@ -901,8 +859,7 @@ static DP_WSR_Stream RdmaInitWriterPerReader(CP_Services Svcs, Rdma_WSR_Stream WSR_Stream = malloc(sizeof(*WSR_Stream)); FabricState Fabric = WS_Stream->Fabric; RdmaWriterContactInfo ContactInfo; - RdmaReaderContactInfo *providedReaderInfo = - (RdmaReaderContactInfo *)providedReaderInfo_v; + RdmaReaderContactInfo *providedReaderInfo = (RdmaReaderContactInfo *)providedReaderInfo_v; RdmaBufferHandle ReaderRollHandle; int i; @@ -911,13 +868,12 @@ static DP_WSR_Stream RdmaInitWriterPerReader(CP_Services Svcs, WSR_Stream->ReaderCohortSize = readerCohortSize; - WSR_Stream->ReaderAddr = - calloc(readerCohortSize, sizeof(*WSR_Stream->ReaderAddr)); + WSR_Stream->ReaderAddr = calloc(readerCohortSize, sizeof(*WSR_Stream->ReaderAddr)); for (i = 0; i < readerCohortSize; i++) { - fi_av_insert(Fabric->av, providedReaderInfo[i]->Address, 1, - &WSR_Stream->ReaderAddr[i], 0, NULL); + fi_av_insert(Fabric->av, providedReaderInfo[i]->Address, 1, &WSR_Stream->ReaderAddr[i], 0, + NULL); Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, "Received contact info for RS_Stream %p, WSR Rank %d\n", providedReaderInfo[i]->RS_Stream, i); @@ -928,8 +884,8 @@ static DP_WSR_Stream RdmaInitWriterPerReader(CP_Services Svcs, * structure */ pthread_mutex_lock(&wsr_mutex); - WS_Stream->Readers = realloc( - WS_Stream->Readers, sizeof(*WSR_Stream) * (WS_Stream->ReaderCount + 1)); + WS_Stream->Readers = + realloc(WS_Stream->Readers, sizeof(*WSR_Stream) * (WS_Stream->ReaderCount + 1)); WS_Stream->Readers[WS_Stream->ReaderCount] = WSR_Stream; WS_Stream->ReaderCount++; pthread_mutex_unlock(&wsr_mutex); @@ -939,23 +895,20 @@ static DP_WSR_Stream RdmaInitWriterPerReader(CP_Services Svcs, ContactInfo->Length = Fabric->info->src_addrlen; ContactInfo->Address = malloc(ContactInfo->Length); - fi_getname((fid_t)Fabric->signal, ContactInfo->Address, - &ContactInfo->Length); + fi_getname((fid_t)Fabric->signal, ContactInfo->Address, &ContactInfo->Length); ReaderRollHandle = &ContactInfo->ReaderRollHandle; - ReaderRollHandle->Block = - calloc(readerCohortSize, sizeof(struct _RdmaBuffer)); + ReaderRollHandle->Block = calloc(readerCohortSize, sizeof(struct _RdmaBuffer)); fi_mr_reg(Fabric->domain, ReaderRollHandle->Block, - readerCohortSize * sizeof(struct _RdmaBuffer), FI_REMOTE_WRITE, 0, - 0, 0, &WSR_Stream->rrmr, Fabric->ctx); + readerCohortSize * sizeof(struct _RdmaBuffer), FI_REMOTE_WRITE, 0, 0, 0, + &WSR_Stream->rrmr, Fabric->ctx); ReaderRollHandle->Key = fi_mr_key(WSR_Stream->rrmr); WSR_Stream->WriterContactInfo = ContactInfo; WSR_Stream->ReaderRoll = malloc(sizeof(struct _RdmaBuffer)); WSR_Stream->ReaderRoll->Handle = *ReaderRollHandle; - WSR_Stream->ReaderRoll->BufferLen = - readerCohortSize * sizeof(struct _RdmaBuffer); + WSR_Stream->ReaderRoll->BufferLen = readerCohortSize * sizeof(struct _RdmaBuffer); WSR_Stream->Preload = 0; WSR_Stream->SelectionPulled = 0; @@ -968,37 +921,30 @@ static DP_WSR_Stream RdmaInitWriterPerReader(CP_Services Svcs, return WSR_Stream; } -static void RdmaProvideWriterDataToReader(CP_Services Svcs, - DP_RS_Stream RS_Stream_v, - int writerCohortSize, - CP_PeerCohort PeerCohort, +static void RdmaProvideWriterDataToReader(CP_Services Svcs, DP_RS_Stream RS_Stream_v, + int writerCohortSize, CP_PeerCohort PeerCohort, void **providedWriterInfo_v) { Rdma_RS_Stream RS_Stream = (Rdma_RS_Stream)RS_Stream_v; FabricState Fabric = RS_Stream->Fabric; - RdmaWriterContactInfo *providedWriterInfo = - (RdmaWriterContactInfo *)providedWriterInfo_v; + RdmaWriterContactInfo *providedWriterInfo = (RdmaWriterContactInfo *)providedWriterInfo_v; RS_Stream->PeerCohort = PeerCohort; RS_Stream->WriterCohortSize = writerCohortSize; - RS_Stream->WriterAddr = - calloc(writerCohortSize, sizeof(*RS_Stream->WriterAddr)); - RS_Stream->WriterRoll = - calloc(writerCohortSize, sizeof(*RS_Stream->WriterRoll)); + RS_Stream->WriterAddr = calloc(writerCohortSize, sizeof(*RS_Stream->WriterAddr)); + RS_Stream->WriterRoll = calloc(writerCohortSize, sizeof(*RS_Stream->WriterRoll)); /* * make a copy of writer contact information (original will not be * preserved) */ - RS_Stream->WriterContactInfo = - malloc(sizeof(struct _RdmaWriterContactInfo) * writerCohortSize); + RS_Stream->WriterContactInfo = malloc(sizeof(struct _RdmaWriterContactInfo) * writerCohortSize); for (int i = 0; i < writerCohortSize; i++) { - RS_Stream->WriterContactInfo[i].WS_Stream = - providedWriterInfo[i]->WS_Stream; - fi_av_insert(Fabric->av, providedWriterInfo[i]->Address, 1, - &RS_Stream->WriterAddr[i], 0, NULL); + RS_Stream->WriterContactInfo[i].WS_Stream = providedWriterInfo[i]->WS_Stream; + fi_av_insert(Fabric->av, providedWriterInfo[i]->Address, 1, &RS_Stream->WriterAddr[i], 0, + NULL); RS_Stream->WriterRoll[i] = providedWriterInfo[i]->ReaderRollHandle; Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, "Received contact info for WS_stream %p, WSR Rank %d\n", @@ -1006,8 +952,8 @@ static void RdmaProvideWriterDataToReader(CP_Services Svcs, } } -static void LogRequest(CP_Services Svcs, Rdma_RS_Stream RS_Stream, int Rank, - long Timestep, size_t Offset, size_t Length) +static void LogRequest(CP_Services Svcs, Rdma_RS_Stream RS_Stream, int Rank, long Timestep, + size_t Offset, size_t Length) { RdmaStepLogEntry *StepLog_p; RdmaStepLogEntry StepLog; @@ -1024,8 +970,7 @@ static void LogRequest(CP_Services Svcs, Rdma_RS_Stream RS_Stream, int Rank, if (!(*StepLog_p) || (*StepLog_p)->Timestep != Timestep) { StepLog = malloc(sizeof(*StepLog)); - StepLog->RankLog = - calloc(RS_Stream->WriterCohortSize, sizeof(*StepLog->RankLog)); + StepLog->RankLog = calloc(RS_Stream->WriterCohortSize, sizeof(*StepLog->RankLog)); StepLog->Timestep = Timestep; StepLog->Next = *StepLog_p; StepLog->BufferSize = 0; @@ -1041,9 +986,8 @@ static void LogRequest(CP_Services Svcs, Rdma_RS_Stream RS_Stream, int Rank, StepLog->Entries++; if (!StepLog->RankLog[Rank].ReqLog) { - ReqLogSize = - (REQ_LIST_GRAN * sizeof(struct _RdmaRankReqLog)) + - sizeof(uint64_t); // extra uint64_t for the preload buffer key + ReqLogSize = (REQ_LIST_GRAN * sizeof(struct _RdmaRankReqLog)) + + sizeof(uint64_t); // extra uint64_t for the preload buffer key StepLog->RankLog[Rank].ReqLog = calloc(1, ReqLogSize); StepLog->RankLog[Rank].MaxEntries = REQ_LIST_GRAN; StepLog->WRanks++; @@ -1051,11 +995,9 @@ static void LogRequest(CP_Services Svcs, Rdma_RS_Stream RS_Stream, int Rank, if (StepLog->RankLog[Rank].MaxEntries == StepLog->RankLog[Rank].Entries) { StepLog->RankLog[Rank].MaxEntries *= 2; - ReqLogSize = (StepLog->RankLog[Rank].MaxEntries * - sizeof(struct _RdmaRankReqLog)) + - sizeof(uint64_t); - StepLog->RankLog[Rank].ReqLog = - realloc(StepLog->RankLog[Rank].ReqLog, ReqLogSize); + ReqLogSize = + (StepLog->RankLog[Rank].MaxEntries * sizeof(struct _RdmaRankReqLog)) + sizeof(uint64_t); + StepLog->RankLog[Rank].ReqLog = realloc(StepLog->RankLog[Rank].ReqLog, ReqLogSize); } StepLog->RankLog[Rank].BufferSize += Length; LogIdx = StepLog->RankLog[Rank].Entries++; @@ -1067,9 +1009,8 @@ static void LogRequest(CP_Services Svcs, Rdma_RS_Stream RS_Stream, int Rank, static int WaitForAnyPull(CP_Services Svcs, Rdma_RS_Stream Stream); -static ssize_t PostRead(CP_Services Svcs, Rdma_RS_Stream RS_Stream, int Rank, - long Timestep, size_t Offset, size_t Length, - void *Buffer, RdmaBufferHandle Info, +static ssize_t PostRead(CP_Services Svcs, Rdma_RS_Stream RS_Stream, int Rank, long Timestep, + size_t Offset, size_t Length, void *Buffer, RdmaBufferHandle Info, RdmaCompletionHandle *ret_v) { FabricState Fabric = RS_Stream->Fabric; @@ -1091,44 +1032,41 @@ static ssize_t PostRead(CP_Services Svcs, Rdma_RS_Stream RS_Stream, int Rank, if (Fabric->local_mr_req) { // register dest buffer - fi_mr_reg(Fabric->domain, Buffer, Length, FI_READ, 0, 0, 0, - &ret->LocalMR, Fabric->ctx); + fi_mr_reg(Fabric->domain, Buffer, Length, FI_READ, 0, 0, 0, &ret->LocalMR, Fabric->ctx); LocalDesc = fi_mr_desc(ret->LocalMR); } Addr = Info->Block + Offset; - Svcs->verbose( - RS_Stream->CP_Stream, DPTraceVerbose, - "Remote read target is Rank %d (Offset = %zi, Length = %zi)\n", Rank, - Offset, Length); + Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, + "Remote read target is Rank %d (Offset = %zi, Length = %zi)\n", Rank, Offset, + Length); do { - rc = fi_read(Fabric->signal, Buffer, Length, LocalDesc, SrcAddress, - (uint64_t)Addr, Info->Key, ret); + rc = fi_read(Fabric->signal, Buffer, Length, LocalDesc, SrcAddress, (uint64_t)Addr, + Info->Key, ret); } while (rc == -EAGAIN); if (rc != 0) { - Svcs->verbose(RS_Stream->CP_Stream, DPCriticalVerbose, - "fi_read failed with code %d.\n", rc); + Svcs->verbose(RS_Stream->CP_Stream, DPCriticalVerbose, "fi_read failed with code %d.\n", + rc); return (rc); } else { Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, - "Posted RDMA get for Writer Rank %d for handle %p\n", - Rank, (void *)ret); + "Posted RDMA get for Writer Rank %d for handle %p\n", Rank, (void *)ret); RS_Stream->PendingReads++; } return (rc); } -static RdmaBuffer GetRequest(Rdma_RS_Stream Stream, RdmaStepLogEntry StepLog, - int Rank, size_t Offset, size_t Length) +static RdmaBuffer GetRequest(Rdma_RS_Stream Stream, RdmaStepLogEntry StepLog, int Rank, + size_t Offset, size_t Length) { RdmaRankReqLog RankLog = &StepLog->RankLog[Rank]; @@ -1147,10 +1085,8 @@ static RdmaBuffer GetRequest(Rdma_RS_Stream Stream, RdmaStepLogEntry StepLog, return (NULL); } -static void *RdmaReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, - int Rank, long Timestep, size_t Offset, - size_t Length, void *Buffer, - void *DP_TimestepInfo) +static void *RdmaReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, int Rank, long Timestep, + size_t Offset, size_t Length, void *Buffer, void *DP_TimestepInfo) { RdmaCompletionHandle ret = {0}; Rdma_RS_Stream RS_Stream = (Rdma_RS_Stream)Stream_v; @@ -1162,19 +1098,16 @@ static void *RdmaReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, int WRidx; Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, - "Performing remote read of Writer Rank %d at step %d\n", Rank, - Timestep); + "Performing remote read of Writer Rank %d at step %d\n", Rank, Timestep); if (Info) { Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, - "Block address is %p, with a key of %d\n", Info->Block, - Info->Key); + "Block address is %p, with a key of %d\n", Info->Block, Info->Key); } else { - Svcs->verbose(RS_Stream->CP_Stream, DPCriticalVerbose, - "Timestep info is null\n"); + Svcs->verbose(RS_Stream->CP_Stream, DPCriticalVerbose, "Timestep info is null\n"); free(ret); return (NULL); } @@ -1183,8 +1116,7 @@ static void *RdmaReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, if (RS_Stream->PreloadPosted) { RS_Stream->TotalReads++; - Req = GetRequest(RS_Stream, RS_Stream->PreloadStepLog, Rank, Offset, - Length); + Req = GetRequest(RS_Stream, RS_Stream->PreloadStepLog, Rank, Offset, Length); if (Req) { BufferSlot = Timestep & 1; @@ -1192,8 +1124,7 @@ static void *RdmaReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, RankLog = &StepLog->RankLog[Rank]; WRidx = Req - RankLog->ReqLog; ret = &((RankLog->PreloadHandles[BufferSlot])[WRidx]); - ret->PreloadBuffer = - Req->Handle.Block + (BufferSlot * StepLog->BufferSize); + ret->PreloadBuffer = Req->Handle.Block + (BufferSlot * StepLog->BufferSize); ret->Pending++; if (ret->Pending == 0) { @@ -1203,11 +1134,10 @@ static void *RdmaReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, } else if (ret->Pending != 1) { - Svcs->verbose( - RS_Stream->CP_Stream, DPCriticalVerbose, - "rank %d, wrank %d, entry %d, buffer slot %d, bad " - "handle pending value.\n", - RS_Stream->Rank, Rank, WRidx, BufferSlot); + Svcs->verbose(RS_Stream->CP_Stream, DPCriticalVerbose, + "rank %d, wrank %d, entry %d, buffer slot %d, bad " + "handle pending value.\n", + RS_Stream->Rank, Rank, WRidx, BufferSlot); } } else @@ -1217,8 +1147,7 @@ static void *RdmaReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, "(Offset = %zi, Length = %zi \n", Rank, Offset, Length); ret->PreloadBuffer = NULL; - if (PostRead(Svcs, RS_Stream, Rank, Timestep, Offset, Length, - Buffer, Info, &ret) != 0) + if (PostRead(Svcs, RS_Stream, Rank, Timestep, Offset, Length, Buffer, Info, &ret) != 0) { free(ret); return (NULL); @@ -1228,8 +1157,7 @@ static void *RdmaReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, else { LogRequest(Svcs, RS_Stream, Rank, Timestep, Offset, Length); - if (PostRead(Svcs, RS_Stream, Rank, Timestep, Offset, Length, Buffer, - Info, &ret) != 0) + if (PostRead(Svcs, RS_Stream, Rank, Timestep, Offset, Length, Buffer, Info, &ret) != 0) { free(ret); return (NULL); @@ -1246,8 +1174,7 @@ static void *RdmaReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, return (ret); } -static void RdmaNotifyConnFailure(CP_Services Svcs, DP_RS_Stream Stream_v, - int FailedPeerRank) +static void RdmaNotifyConnFailure(CP_Services Svcs, DP_RS_Stream Stream_v, int FailedPeerRank) { /* DP_RS_Stream is the return from InitReader */ Rdma_RS_Stream Stream = (Rdma_RS_Stream)Stream_v; @@ -1260,8 +1187,7 @@ static void RdmaNotifyConnFailure(CP_Services Svcs, DP_RS_Stream Stream_v, /* We still have to handle Pull completions while waiting for push to complete */ -static int DoPushWait(CP_Services Svcs, Rdma_RS_Stream Stream, - RdmaCompletionHandle Handle) +static int DoPushWait(CP_Services Svcs, Rdma_RS_Stream Stream, RdmaCompletionHandle Handle) { FabricState Fabric = Stream->Fabric; RdmaStepLogEntry StepLog = Stream->PreloadStepLog; @@ -1288,15 +1214,12 @@ static int DoPushWait(CP_Services Svcs, Rdma_RS_Stream Stream, WRank = CQEntry.data & 0x0FFFFF; Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, - "got completion for Rank %d, push request %d.\n", - WRank, WRidx); + "got completion for Rank %d, push request %d.\n", WRank, WRidx); RankLog = &StepLog->RankLog[WRank]; Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, - "CQEntry.data = %" PRIu64 - ", BufferSlot = %d, WRank = %d, WRidx = %d\n", + "CQEntry.data = %" PRIu64 ", BufferSlot = %d, WRank = %d, WRidx = %d\n", CQEntry.data, BufferSlot, WRank, WRidx); - Handle_t = (RdmaCompletionHandle) & - ((RankLog->PreloadHandles[BufferSlot])[WRidx]); + Handle_t = (RdmaCompletionHandle) & ((RankLog->PreloadHandles[BufferSlot])[WRidx]); if (Handle_t) { pthread_mutex_lock(&ts_mutex); @@ -1308,11 +1231,10 @@ static int DoPushWait(CP_Services Svcs, Rdma_RS_Stream Stream, } else if (Handle_t->Pending != -1) { - Svcs->verbose( - Stream->CP_Stream, DPCriticalVerbose, - "rank %d, wrank %d, entry %d, buffer slot %d, bad " - "handle pending value.\n", - Stream->Rank, WRank, WRidx, BufferSlot); + Svcs->verbose(Stream->CP_Stream, DPCriticalVerbose, + "rank %d, wrank %d, entry %d, buffer slot %d, bad " + "handle pending value.\n", + Stream->Rank, WRank, WRidx, BufferSlot); } else { @@ -1322,16 +1244,14 @@ static int DoPushWait(CP_Services Svcs, Rdma_RS_Stream Stream, } else { - Svcs->verbose( - Stream->CP_Stream, DPCriticalVerbose, - "Got push completion without a known handle...\n"); + Svcs->verbose(Stream->CP_Stream, DPCriticalVerbose, + "Got push completion without a known handle...\n"); } } else { Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, - "got completion for request with handle %p.\n", - CQEntry.op_context); + "got completion for request with handle %p.\n", CQEntry.op_context); Handle_t = (RdmaCompletionHandle)CQEntry.op_context; Handle_t->Pending--; Stream->PendingReads--; @@ -1362,10 +1282,9 @@ static int WaitForAnyPull(CP_Services Svcs, Rdma_RS_Stream Stream) } else { - Svcs->verbose( - Stream->CP_Stream, DPTraceVerbose, - "got completion for request with handle %p (flags %li).\n", - CQEntry.op_context, CQEntry.flags); + Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, + "got completion for request with handle %p (flags %li).\n", + CQEntry.op_context, CQEntry.flags); Handle_t = (RdmaCompletionHandle)CQEntry.op_context; Handle_t->Pending--; Stream->PendingReads--; @@ -1379,8 +1298,7 @@ static int WaitForAnyPull(CP_Services Svcs, Rdma_RS_Stream Stream) return 1; } -static int DoPullWait(CP_Services Svcs, Rdma_RS_Stream Stream, - RdmaCompletionHandle Handle) +static int DoPullWait(CP_Services Svcs, Rdma_RS_Stream Stream, RdmaCompletionHandle Handle) { while (Handle->Pending > 0) { @@ -1399,8 +1317,7 @@ static int RdmaWaitForCompletion(CP_Services Svcs, void *Handle_v) RdmaCompletionHandle Handle = (RdmaCompletionHandle)Handle_v; Rdma_RS_Stream Stream = Handle->CPStream; - Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "Rank %d, %s\n", - Stream->Rank, __func__); + Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "Rank %d, %s\n", Stream->Rank, __func__); if (Stream->PreloadPosted && Handle->PreloadBuffer) { @@ -1412,8 +1329,7 @@ static int RdmaWaitForCompletion(CP_Services Svcs, void *Handle_v) } } -static void RdmaProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, - struct _SstData *Data, +static void RdmaProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, struct _SstData *Data, struct _SstData *LocalMetadata, long Timestep, void **TimestepInfoPtr) { @@ -1429,8 +1345,8 @@ static void RdmaProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, Entry->BufferSlot = -1; Entry->Desc = NULL; - fi_mr_reg(Fabric->domain, Data->block, Data->DataSize, - FI_WRITE | FI_REMOTE_READ, 0, 0, 0, &Entry->mr, Fabric->ctx); + fi_mr_reg(Fabric->domain, Data->block, Data->DataSize, FI_WRITE | FI_REMOTE_READ, 0, 0, 0, + &Entry->mr, Fabric->ctx); Entry->Key = fi_mr_key(Entry->mr); if (Fabric->local_mr_req) { @@ -1452,22 +1368,20 @@ static void RdmaProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, Info->Block = (uint8_t *)Data->block; Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, - "Providing timestep data with block %p and access key %d\n", - Info->Block, Info->Key); + "Providing timestep data with block %p and access key %d\n", Info->Block, + Info->Key); *TimestepInfoPtr = Info; } -static void RdmaReleaseTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, - long Timestep) +static void RdmaReleaseTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, long Timestep) { Rdma_WS_Stream Stream = (Rdma_WS_Stream)Stream_v; TimestepList *List = &Stream->Timesteps; TimestepList ReleaseTSL; RdmaBufferHandle Info; - Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "Releasing timestep %ld\n", - Timestep); + Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "Releasing timestep %ld\n", Timestep); pthread_mutex_lock(&ts_mutex); while ((*List) && (*List)->Timestep != Timestep) @@ -1502,8 +1416,7 @@ static void RdmaReleaseTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, free(ReleaseTSL); } -static void RdmaDestroyRankReqLog(Rdma_RS_Stream RS_Stream, - RdmaRankReqLog RankReqLog) +static void RdmaDestroyRankReqLog(Rdma_RS_Stream RS_Stream, RdmaRankReqLog RankReqLog) { int i; @@ -1525,15 +1438,13 @@ static void RdmaDestroyReader(CP_Services Svcs, DP_RS_Stream RS_Stream_v) if (RS_Stream->PreloadStep > -1) { - Svcs->verbose( - RS_Stream->CP_Stream, DPSummaryVerbose, - "Reader Rank %d: %li early reads of %li total reads (where preload " - "was possible.)\n", - RS_Stream->Rank, RS_Stream->EarlyReads, RS_Stream->TotalReads); + Svcs->verbose(RS_Stream->CP_Stream, DPSummaryVerbose, + "Reader Rank %d: %li early reads of %li total reads (where preload " + "was possible.)\n", + RS_Stream->Rank, RS_Stream->EarlyReads, RS_Stream->TotalReads); } - Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, - "Tearing down RDMA state on reader.\n"); + Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, "Tearing down RDMA state on reader.\n"); if (RS_Stream->Fabric) { fini_fabric(RS_Stream->Fabric, Svcs, RS_Stream->CP_Stream); @@ -1558,8 +1469,7 @@ static void RdmaDestroyReader(CP_Services Svcs, DP_RS_Stream RS_Stream_v) free(RS_Stream); } -static void RdmaDestroyWriterPerReader(CP_Services Svcs, - DP_WSR_Stream WSR_Stream_v) +static void RdmaDestroyWriterPerReader(CP_Services Svcs, DP_WSR_Stream WSR_Stream_v) { Rdma_WSR_Stream WSR_Stream = {0}; memcpy(&WSR_Stream, &WSR_Stream_v, sizeof(Rdma_WSR_Stream)); @@ -1571,8 +1481,7 @@ static void RdmaDestroyWriterPerReader(CP_Services Svcs, { if (WS_Stream->Readers[i] == WSR_Stream) { - WS_Stream->Readers[i] = - WS_Stream->Readers[WS_Stream->ReaderCount - 1]; + WS_Stream->Readers[i] = WS_Stream->Readers[WS_Stream->ReaderCount - 1]; break; } } @@ -1581,8 +1490,8 @@ static void RdmaDestroyWriterPerReader(CP_Services Svcs, { free(WSR_Stream->ReaderAddr); } - WS_Stream->Readers = realloc( - WS_Stream->Readers, sizeof(*WSR_Stream) * (WS_Stream->ReaderCount - 1)); + WS_Stream->Readers = + realloc(WS_Stream->Readers, sizeof(*WSR_Stream) * (WS_Stream->ReaderCount - 1)); WS_Stream->ReaderCount--; pthread_mutex_unlock(&wsr_mutex); @@ -1605,16 +1514,13 @@ static void RdmaDestroyWriterPerReader(CP_Services Svcs, } static FMField RdmaReaderContactList[] = { - {"reader_ID", "integer", sizeof(void *), - FMOffset(RdmaReaderContactInfo, RS_Stream)}, + {"reader_ID", "integer", sizeof(void *), FMOffset(RdmaReaderContactInfo, RS_Stream)}, {"Length", "integer", sizeof(int), FMOffset(RdmaReaderContactInfo, Length)}, - {"Address", "integer[Length]", sizeof(char), - FMOffset(RdmaReaderContactInfo, Address)}, + {"Address", "integer[Length]", sizeof(char), FMOffset(RdmaReaderContactInfo, Address)}, {NULL, NULL, 0, 0}}; static FMStructDescRec RdmaReaderContactStructs[] = { - {"RdmaReaderContactInfo", RdmaReaderContactList, - sizeof(struct _RdmaReaderContactInfo), NULL}, + {"RdmaReaderContactInfo", RdmaReaderContactList, sizeof(struct _RdmaReaderContactInfo), NULL}, {NULL, NULL, 0, NULL}}; static FMField RdmaBufferHandleList[] = { @@ -1623,8 +1529,7 @@ static FMField RdmaBufferHandleList[] = { {NULL, NULL, 0, 0}}; static FMStructDescRec RdmaBufferHandleStructs[] = { - {"RdmaBufferHandle", RdmaBufferHandleList, sizeof(struct _RdmaBufferHandle), - NULL}, + {"RdmaBufferHandle", RdmaBufferHandleList, sizeof(struct _RdmaBufferHandle), NULL}, {NULL, NULL, 0, NULL}}; static void RdmaDestroyWriter(CP_Services Svcs, DP_WS_Stream WS_Stream_v) @@ -1644,8 +1549,7 @@ static void RdmaDestroyWriter(CP_Services Svcs, DP_WS_Stream WS_Stream_v) RdmaDestroyWriterPerReader(Svcs, WS_Stream->Readers[0]); } - Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, - "Releasing remaining timesteps.\n"); + Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, "Releasing remaining timesteps.\n"); pthread_mutex_lock(&ts_mutex); while (WS_Stream->Timesteps) @@ -1657,8 +1561,7 @@ static void RdmaDestroyWriter(CP_Services Svcs, DP_WS_Stream WS_Stream_v) } pthread_mutex_unlock(&ts_mutex); - Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, - "Tearing down RDMA state on writer.\n"); + Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, "Tearing down RDMA state on writer.\n"); if (WS_Stream->Fabric) { fini_fabric(WS_Stream->Fabric, Svcs, WS_Stream->CP_Stream); @@ -1676,20 +1579,16 @@ static void RdmaDestroyWriter(CP_Services Svcs, DP_WS_Stream WS_Stream_v) } static FMField RdmaWriterContactList[] = { - {"writer_ID", "integer", sizeof(void *), - FMOffset(RdmaWriterContactInfo, WS_Stream)}, + {"writer_ID", "integer", sizeof(void *), FMOffset(RdmaWriterContactInfo, WS_Stream)}, {"Length", "integer", sizeof(int), FMOffset(RdmaWriterContactInfo, Length)}, - {"Address", "integer[Length]", sizeof(char), - FMOffset(RdmaWriterContactInfo, Address)}, + {"Address", "integer[Length]", sizeof(char), FMOffset(RdmaWriterContactInfo, Address)}, {"ReaderRollHandle", "RdmaBufferHandle", sizeof(struct _RdmaBufferHandle), FMOffset(RdmaWriterContactInfo, ReaderRollHandle)}, {NULL, NULL, 0, 0}}; static FMStructDescRec RdmaWriterContactStructs[] = { - {"RdmaWriterContactInfo", RdmaWriterContactList, - sizeof(struct _RdmaWriterContactInfo), NULL}, - {"RdmaBufferHandle", RdmaBufferHandleList, sizeof(struct _RdmaBufferHandle), - NULL}, + {"RdmaWriterContactInfo", RdmaWriterContactList, sizeof(struct _RdmaWriterContactInfo), NULL}, + {"RdmaBufferHandle", RdmaBufferHandleList, sizeof(struct _RdmaBufferHandle), NULL}, {NULL, NULL, 0, NULL}}; static struct _CP_DP_Interface RdmaDPInterface = {0}; @@ -1706,8 +1605,7 @@ static struct _CP_DP_Interface RdmaDPInterface = {0}; * what is set in the FABRIC_IFACE environment variable. * */ -static int RdmaGetPriority(CP_Services Svcs, void *CP_Stream, - struct _SstParams *Params) +static int RdmaGetPriority(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params) { struct fi_info *hints, *info, *originfo; char *ifname; @@ -1715,10 +1613,10 @@ static int RdmaGetPriority(CP_Services Svcs, void *CP_Stream, int Ret = -1; hints = fi_allocinfo(); - hints->caps = FI_MSG | FI_SEND | FI_RECV | FI_REMOTE_READ | - FI_REMOTE_WRITE | FI_RMA | FI_READ | FI_WRITE; - hints->mode = FI_CONTEXT | FI_LOCAL_MR | FI_CONTEXT2 | FI_MSG_PREFIX | - FI_ASYNC_IOV | FI_RX_CQ_DATA; + hints->caps = + FI_MSG | FI_SEND | FI_RECV | FI_REMOTE_READ | FI_REMOTE_WRITE | FI_RMA | FI_READ | FI_WRITE; + hints->mode = + FI_CONTEXT | FI_LOCAL_MR | FI_CONTEXT2 | FI_MSG_PREFIX | FI_ASYNC_IOV | FI_RX_CQ_DATA; hints->domain_attr->mr_mode = FI_MR_BASIC; hints->domain_attr->control_progress = FI_PROGRESS_AUTO; hints->domain_attr->data_progress = FI_PROGRESS_AUTO; @@ -1767,8 +1665,8 @@ static int RdmaGetPriority(CP_Services Svcs, void *CP_Stream, Ret = 100; break; } - if ((strstr(prov_name, "verbs") && info->src_addr) || - strstr(prov_name, "gni") || strstr(prov_name, "psm2")) + if ((strstr(prov_name, "verbs") && info->src_addr) || strstr(prov_name, "gni") || + strstr(prov_name, "psm2")) { Svcs->verbose(CP_Stream, DPPerStepVerbose, @@ -1782,9 +1680,8 @@ static int RdmaGetPriority(CP_Services Svcs, void *CP_Stream, if (Ret == -1) { - Svcs->verbose( - CP_Stream, DPPerStepVerbose, - "RDMA Dataplane could not find an RDMA-compatible fabric.\n"); + Svcs->verbose(CP_Stream, DPPerStepVerbose, + "RDMA Dataplane could not find an RDMA-compatible fabric.\n"); } if (originfo) @@ -1792,9 +1689,8 @@ static int RdmaGetPriority(CP_Services Svcs, void *CP_Stream, fi_freeinfo(originfo); } - Svcs->verbose( - CP_Stream, DPPerStepVerbose, - "RDMA Dataplane evaluating viability, returning priority %d\n", Ret); + Svcs->verbose(CP_Stream, DPPerStepVerbose, + "RDMA Dataplane evaluating viability, returning priority %d\n", Ret); return Ret; } @@ -1807,8 +1703,7 @@ static void RdmaUnGetPriority(CP_Services Svcs, void *CP_Stream) Svcs->verbose(CP_Stream, DPPerStepVerbose, "RDMA Dataplane unloading\n"); } -static void PushData(CP_Services Svcs, Rdma_WSR_Stream Stream, - TimestepList Step, int BufferSlot) +static void PushData(CP_Services Svcs, Rdma_WSR_Stream Stream, TimestepList Step, int BufferSlot) { Rdma_WS_Stream WS_Stream = Stream->WS_Stream; FabricState Fabric = WS_Stream->Fabric; @@ -1831,15 +1726,13 @@ static void PushData(CP_Services Svcs, Rdma_WSR_Stream Stream, Data |= BufferSlot << 31; Data &= 0xFFFFFFFF; Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, - "Sending Data = %" PRIu64 - " ; BufferSlot = %d, Rank = %d, Entry = %d\n", + "Sending Data = %" PRIu64 " ; BufferSlot = %d, Rank = %d, Entry = %d\n", Data, BufferSlot, WS_Stream->Rank, i); Req = &RankReq->ReqLog[i]; do { - rc = fi_writedata(Fabric->signal, StepBuffer + Req->Offset, - Req->BufferLen, Step->Desc, Data, - Stream->ReaderAddr[RankReq->Rank], + rc = fi_writedata(Fabric->signal, StepBuffer + Req->Offset, Req->BufferLen, + Step->Desc, Data, Stream->ReaderAddr[RankReq->Rank], (uint64_t)Req->Handle.Block + (BufferSlot * RankReq->PreloadBufferSize), RollBuffer->Offset, (void *)(Step->Timestep)); @@ -1855,8 +1748,7 @@ static void PushData(CP_Services Svcs, Rdma_WSR_Stream Stream, } } -static void RdmaReaderRegisterTimestep(CP_Services Svcs, - DP_WSR_Stream WSRStream_v, long Timestep, +static void RdmaReaderRegisterTimestep(CP_Services Svcs, DP_WSR_Stream WSRStream_v, long Timestep, SstPreloadModeType PreloadMode) { Rdma_WSR_Stream WSR_Stream = (Rdma_WSR_Stream)WSRStream_v; @@ -1868,16 +1760,14 @@ static void RdmaReaderRegisterTimestep(CP_Services Svcs, WS_Stream->DefLocked = Timestep; if (WSR_Stream->SelectLocked >= 0) { - Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, - "enabling preload.\n"); + Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, "enabling preload.\n"); WSR_Stream->Preload = 1; } } Step = GetStep(WS_Stream, Timestep); pthread_mutex_lock(&ts_mutex); - if (WSR_Stream->SelectionPulled && - WSR_Stream->PreloadUsed[Step->Timestep & 1] == 0) + if (WSR_Stream->SelectionPulled && WSR_Stream->PreloadUsed[Step->Timestep & 1] == 0) { PushData(Svcs, WSR_Stream, Step, Step->Timestep & 1); WSR_Stream->PreloadUsed[Step->Timestep & 1] = 1; @@ -1909,8 +1799,7 @@ static void PostPreload(CP_Services Svcs, Rdma_RS_Stream Stream, long Timestep) int rc; int i, j; - Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "rank %d: %s\n", - Stream->Rank, __func__); + Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "rank %d: %s\n", Stream->Rank, __func__); StepLog = Stream->StepLog; while (StepLog) @@ -1933,17 +1822,15 @@ static void PostPreload(CP_Services Svcs, Rdma_RS_Stream Stream, long Timestep) PreloadBuffer->BufferLen = 2 * StepLog->BufferSize; PreloadBuffer->Handle.Block = malloc(PreloadBuffer->BufferLen); - fi_mr_reg(Fabric->domain, PreloadBuffer->Handle.Block, - PreloadBuffer->BufferLen, FI_REMOTE_WRITE, 0, 0, 0, &Stream->pbmr, - Fabric->ctx); + fi_mr_reg(Fabric->domain, PreloadBuffer->Handle.Block, PreloadBuffer->BufferLen, + FI_REMOTE_WRITE, 0, 0, 0, &Stream->pbmr, Fabric->ctx); PreloadKey = fi_mr_key(Stream->pbmr); SBSize = sizeof(*SendBuffer) * StepLog->WRanks; SendBuffer = malloc(SBSize); if (Fabric->local_mr_req) { - fi_mr_reg(Fabric->domain, SendBuffer, SBSize, FI_WRITE, 0, 0, 0, &sbmr, - Fabric->ctx); + fi_mr_reg(Fabric->domain, SendBuffer, SBSize, FI_WRITE, 0, 0, 0, &sbmr, Fabric->ctx); sbdesc = fi_mr_desc(sbmr); } @@ -1951,18 +1838,18 @@ static void PostPreload(CP_Services Svcs, Rdma_RS_Stream Stream, long Timestep) { RBLen = 2 * StepLog->Entries * DP_DATA_RECV_SIZE; Stream->RecvDataBuffer = malloc(RBLen); - fi_mr_reg(Fabric->domain, Stream->RecvDataBuffer, RBLen, FI_RECV, 0, 0, - 0, &Stream->rbmr, Fabric->ctx); + fi_mr_reg(Fabric->domain, Stream->RecvDataBuffer, RBLen, FI_RECV, 0, 0, 0, &Stream->rbmr, + Fabric->ctx); Stream->rbdesc = fi_mr_desc(Stream->rbmr); RecvBuffer = (uint8_t *)Stream->RecvDataBuffer; for (i = 0; i < 2 * StepLog->Entries; i++) { - rc = fi_recv(Fabric->signal, RecvBuffer, DP_DATA_RECV_SIZE, - Stream->rbdesc, FI_ADDR_UNSPEC, Fabric->ctx); + rc = fi_recv(Fabric->signal, RecvBuffer, DP_DATA_RECV_SIZE, Stream->rbdesc, + FI_ADDR_UNSPEC, Fabric->ctx); if (rc) { - Svcs->verbose(Stream->CP_Stream, DPCriticalVerbose, - "Rank %d, fi_recv failed.\n", Stream->Rank); + Svcs->verbose(Stream->CP_Stream, DPCriticalVerbose, "Rank %d, fi_recv failed.\n", + Stream->Rank); } RecvBuffer += DP_DATA_RECV_SIZE; } @@ -1976,8 +1863,7 @@ static void PostPreload(CP_Services Svcs, Rdma_RS_Stream Stream, long Timestep) { RankLog->Buffer = (void *)RawPLBuffer; fi_mr_reg(Fabric->domain, RankLog->ReqLog, - (sizeof(struct _RdmaBuffer) * RankLog->Entries) + - sizeof(uint64_t), + (sizeof(struct _RdmaBuffer) * RankLog->Entries) + sizeof(uint64_t), FI_REMOTE_READ, 0, 0, 0, &RankLog->preqbmr, Fabric->ctx); for (j = 0; j < RankLog->Entries; j++) { @@ -1993,16 +1879,15 @@ static void PostPreload(CP_Services Svcs, Rdma_RS_Stream Stream, long Timestep) *BLenHolder = StepLog->BufferSize; SendBuffer[WRidx].BufferLen = - (RankLog->Entries * sizeof(struct _RdmaBuffer)) + - sizeof(uint64_t); + (RankLog->Entries * sizeof(struct _RdmaBuffer)) + sizeof(uint64_t); SendBuffer[WRidx].Offset = (uint64_t)PreloadKey; SendBuffer[WRidx].Handle.Block = (void *)RankLog->ReqLog; SendBuffer[WRidx].Handle.Key = fi_mr_key(RankLog->preqbmr); - RollDest = (uint64_t)Stream->WriterRoll[i].Block + - (sizeof(struct _RdmaBuffer) * Stream->Rank); - fi_write(Fabric->signal, &SendBuffer[WRidx], - sizeof(struct _RdmaBuffer), sbdesc, Stream->WriterAddr[i], - RollDest, Stream->WriterRoll[i].Key, &SendBuffer[WRidx]); + RollDest = + (uint64_t)Stream->WriterRoll[i].Block + (sizeof(struct _RdmaBuffer) * Stream->Rank); + fi_write(Fabric->signal, &SendBuffer[WRidx], sizeof(struct _RdmaBuffer), sbdesc, + Stream->WriterAddr[i], RollDest, Stream->WriterRoll[i].Key, + &SendBuffer[WRidx]); RankLog->PreloadHandles = malloc(sizeof(void *) * 2); RankLog->PreloadHandles[0] = calloc(sizeof(struct _RdmaCompletionHandle), RankLog->Entries); @@ -2035,14 +1920,13 @@ static void PostPreload(CP_Services Svcs, Rdma_RS_Stream Stream, long Timestep) free(SendBuffer); } -static void RdmaTimestepArrived(CP_Services Svcs, DP_RS_Stream Stream_v, - long Timestep, SstPreloadModeType PreloadMode) +static void RdmaTimestepArrived(CP_Services Svcs, DP_RS_Stream Stream_v, long Timestep, + SstPreloadModeType PreloadMode) { Rdma_RS_Stream Stream = (Rdma_RS_Stream)Stream_v; - Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, - "%s with Timestep = %li, PreloadMode = %d\n", __func__, - Timestep, PreloadMode); + Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "%s with Timestep = %li, PreloadMode = %d\n", + __func__, Timestep, PreloadMode); if (PreloadMode == SstPreloadLearned && Stream->PreloadStep == -1) { if (Stream->PreloadAvail) @@ -2050,30 +1934,26 @@ static void RdmaTimestepArrived(CP_Services Svcs, DP_RS_Stream Stream_v, Stream->PreloadStep = Timestep; if (Stream->Rank == 0) { - Svcs->verbose(Stream->CP_Stream, DPSummaryVerbose, - "write pattern is locked.\n"); + Svcs->verbose(Stream->CP_Stream, DPSummaryVerbose, "write pattern is locked.\n"); } } else if (Stream->Rank == 0) { - Svcs->verbose( - Stream->CP_Stream, DPSummaryVerbose, - "RDMA dataplane is ignoring a write pattern lock notification " - "because preloading is disabled. Enable by setting the " - "environment " - "variable SST_DP_PRELOAD to 'yes'\n"); + Svcs->verbose(Stream->CP_Stream, DPSummaryVerbose, + "RDMA dataplane is ignoring a write pattern lock notification " + "because preloading is disabled. Enable by setting the " + "environment " + "variable SST_DP_PRELOAD to 'yes'\n"); } } } -static void RdmaReaderReleaseTimestep(CP_Services Svcs, DP_RS_Stream Stream_v, - long Timestep) +static void RdmaReaderReleaseTimestep(CP_Services Svcs, DP_RS_Stream Stream_v, long Timestep) { Rdma_RS_Stream Stream = (Rdma_RS_Stream)Stream_v; pthread_mutex_lock(&ts_mutex); - if (Stream->PreloadStep > -1 && Timestep >= Stream->PreloadStep && - !Stream->PreloadPosted) + if (Stream->PreloadStep > -1 && Timestep >= Stream->PreloadStep && !Stream->PreloadPosted) { // TODO: Destroy all StepLog entries other than the one used for Preload PostPreload(Svcs, Stream, Timestep); @@ -2105,9 +1985,8 @@ static void PullSelection(CP_Services Svcs, Rdma_WSR_Stream Stream) if (ReaderRoll[i].BufferLen > 0) { RankReq = malloc(sizeof(struct _RdmaRankReqLog)); - RankReq->Entries = - (ReaderRoll[i].BufferLen - sizeof(uint64_t)) / - sizeof(struct _RdmaBuffer); // piggyback the RecvCounter address + RankReq->Entries = (ReaderRoll[i].BufferLen - sizeof(uint64_t)) / + sizeof(struct _RdmaBuffer); // piggyback the RecvCounter address RankReq->ReqLog = malloc(ReaderRoll[i].BufferLen); RankReq->BufferSize = ReaderRoll[i].BufferLen; RankReq->next = NULL; @@ -2121,8 +2000,8 @@ static void PullSelection(CP_Services Svcs, Rdma_WSR_Stream Stream) ReqBuffer.Handle.Block = ReadBuffer = malloc(ReqBuffer.BufferLen); if (Fabric->local_mr_req) { - fi_mr_reg(Fabric->domain, ReqBuffer.Handle.Block, ReqBuffer.BufferLen, - FI_READ, 0, 0, 0, &rrmr, Fabric->ctx); + fi_mr_reg(Fabric->domain, ReqBuffer.Handle.Block, ReqBuffer.BufferLen, FI_READ, 0, 0, 0, + &rrmr, Fabric->ctx); rrdesc = fi_mr_desc(rrmr); } @@ -2130,8 +2009,7 @@ static void PullSelection(CP_Services Svcs, Rdma_WSR_Stream Stream) { RankReq->ReqLog = (RdmaBuffer)ReadBuffer; fi_read(Fabric->signal, RankReq->ReqLog, RankReq->BufferSize, rrdesc, - Stream->ReaderAddr[RankReq->Rank], - (uint64_t)ReaderRoll[RankReq->Rank].Handle.Block, + Stream->ReaderAddr[RankReq->Rank], (uint64_t)ReaderRoll[RankReq->Rank].Handle.Block, ReaderRoll[RankReq->Rank].Handle.Key, RankReq); ReadBuffer += RankReq->BufferSize; } @@ -2144,16 +2022,14 @@ static void PullSelection(CP_Services Svcs, Rdma_WSR_Stream Stream) if (CQEntry.flags & FI_READ) { CQReqLog = CQRankReq->ReqLog; - CQRankReq->PreloadBufferSize = - *((uint64_t *)&CQReqLog[CQRankReq->Entries]); + CQRankReq->PreloadBufferSize = *((uint64_t *)&CQReqLog[CQRankReq->Entries]); RankReq = RankReq->next; } else { - Svcs->verbose( - WS_Stream->CP_Stream, DPCriticalVerbose, - "got unexpected completion while fetching preload patterns." - " This is probably an error.\n"); + Svcs->verbose(WS_Stream->CP_Stream, DPCriticalVerbose, + "got unexpected completion while fetching preload patterns." + " This is probably an error.\n"); } } @@ -2163,8 +2039,7 @@ static void PullSelection(CP_Services Svcs, Rdma_WSR_Stream Stream) } } -static void CompletePush(CP_Services Svcs, Rdma_WSR_Stream Stream, - TimestepList Step) +static void CompletePush(CP_Services Svcs, Rdma_WSR_Stream Stream, TimestepList Step) { Rdma_WS_Stream WS_Stream = Stream->WS_Stream; FabricState Fabric = WS_Stream->Fabric; @@ -2210,8 +2085,7 @@ static void CompletePush(CP_Services Svcs, Rdma_WSR_Stream Stream, } } -static void RdmaReleaseTimestepPerReader(CP_Services Svcs, - DP_WSR_Stream Stream_v, long Timestep) +static void RdmaReleaseTimestepPerReader(CP_Services Svcs, DP_WSR_Stream Stream_v, long Timestep) { Rdma_WSR_Stream Stream = (Rdma_WSR_Stream)Stream_v; Rdma_WS_Stream WS_Stream = Stream->WS_Stream; @@ -2237,11 +2111,10 @@ static void RdmaReleaseTimestepPerReader(CP_Services Svcs, { if (Stream->PreloadUsed[Step->Timestep & 1] == 1) { - Svcs->verbose( - WS_Stream->CP_Stream, DPPerStepVerbose, - "rank %d, RX preload buffers full, deferring" - " preload of step %li.\n", - WS_Stream->Rank, Step->Timestep); + Svcs->verbose(WS_Stream->CP_Stream, DPPerStepVerbose, + "rank %d, RX preload buffers full, deferring" + " preload of step %li.\n", + WS_Stream->Rank, Step->Timestep); } else { diff --git a/source/adios2/toolkit/sst/dp/ucx_dp.c b/source/adios2/toolkit/sst/dp/ucx_dp.c index acabb7ee4a..1b33c5c4c5 100644 --- a/source/adios2/toolkit/sst/dp/ucx_dp.c +++ b/source/adios2/toolkit/sst/dp/ucx_dp.c @@ -95,9 +95,8 @@ struct fabric_state * plane would replace one or both of these with RDMA functionality. */ -static ucs_status_t init_fabric(struct fabric_state *fabric, - struct _SstParams *Params, CP_Services Svcs, - void *CP_Stream) +static ucs_status_t init_fabric(struct fabric_state *fabric, struct _SstParams *Params, + CP_Services Svcs, void *CP_Stream) { ucp_params_t ucp_params; ucp_worker_params_t worker_params; @@ -112,8 +111,7 @@ static ucs_status_t init_fabric(struct fabric_state *fabric, if (status != UCS_OK) { Svcs->verbose(CP_Stream, DPCriticalVerbose, - "UCX Error during ucp_config_read() with: %s.\n", - ucs_status_string(status)); + "UCX Error during ucp_config_read() with: %s.\n", ucs_status_string(status)); return status; } ucp_params.field_mask = UCP_PARAM_FIELD_FEATURES; @@ -122,8 +120,7 @@ static ucs_status_t init_fabric(struct fabric_state *fabric, status = ucp_init(&ucp_params, config, &fabric->ucp_context); if (status != UCS_OK) { - Svcs->verbose(CP_Stream, DPCriticalVerbose, - "UCX Error during ucp_init() with: %s.\n", + Svcs->verbose(CP_Stream, DPCriticalVerbose, "UCX Error during ucp_init() with: %s.\n", ucs_status_string(status)); return status; } @@ -131,8 +128,7 @@ static ucs_status_t init_fabric(struct fabric_state *fabric, worker_params.field_mask = UCP_WORKER_PARAM_FIELD_THREAD_MODE; worker_params.thread_mode = UCS_THREAD_MODE_MULTI; - status = ucp_worker_create(fabric->ucp_context, &worker_params, - &fabric->ucp_worker); + status = ucp_worker_create(fabric->ucp_context, &worker_params, &fabric->ucp_worker); if (status != UCS_OK) { Svcs->verbose(CP_Stream, DPCriticalVerbose, @@ -140,8 +136,8 @@ static ucs_status_t init_fabric(struct fabric_state *fabric, ucs_status_string(status)); return status; } - status = ucp_worker_get_address(fabric->ucp_worker, &fabric->local_addr, - &fabric->local_addr_len); + status = + ucp_worker_get_address(fabric->ucp_worker, &fabric->local_addr, &fabric->local_addr_len); if (status != UCS_OK) { Svcs->verbose(CP_Stream, DPCriticalVerbose, @@ -246,10 +242,9 @@ typedef struct _UcxWriterContactInfo void *Address; } *UcxWriterContactInfo; -static DP_RS_Stream UcxInitReader(CP_Services Svcs, void *CP_Stream, - void **ReaderContactInfoPtr, - struct _SstParams *Params, - attr_list WriterContact, SstStats Stats) +static DP_RS_Stream UcxInitReader(CP_Services Svcs, void *CP_Stream, void **ReaderContactInfoPtr, + struct _SstParams *Params, attr_list WriterContact, + SstStats Stats) { Ucx_RS_Stream Stream = malloc(sizeof(struct _Ucx_RS_Stream)); SMPI_Comm comm = Svcs->getMPIComm(CP_Stream); @@ -276,8 +271,7 @@ static DP_RS_Stream UcxInitReader(CP_Services Svcs, void *CP_Stream, status = init_fabric(Stream->Fabric, Stream->Params, Svcs, CP_Stream); if (status != UCS_OK) { - Svcs->verbose(CP_Stream, DPCriticalVerbose, - "Could not find a valid transport fabric.\n"); + Svcs->verbose(CP_Stream, DPCriticalVerbose, "Could not find a valid transport fabric.\n"); if (Stream->Params) { free(Stream->Params); @@ -288,9 +282,8 @@ static DP_RS_Stream UcxInitReader(CP_Services Svcs, void *CP_Stream, return Stream; } -static DP_WS_Stream UcxInitWriter(CP_Services Svcs, void *CP_Stream, - struct _SstParams *Params, attr_list DPAttrs, - SstStats Stats) +static DP_WS_Stream UcxInitWriter(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params, + attr_list DPAttrs, SstStats Stats) { Ucx_WS_Stream Stream = malloc(sizeof(struct _Ucx_WS_Stream)); SMPI_Comm comm = Svcs->getMPIComm(CP_Stream); @@ -304,8 +297,7 @@ static DP_WS_Stream UcxInitWriter(CP_Services Svcs, void *CP_Stream, status = init_fabric(Stream->Fabric, Params, Svcs, CP_Stream); if (status != UCS_OK) { - Svcs->verbose(CP_Stream, DPCriticalVerbose, - "Could not find a valid transport fabric.\n"); + Svcs->verbose(CP_Stream, DPCriticalVerbose, "Could not find a valid transport fabric.\n"); return NULL; } @@ -314,10 +306,10 @@ static DP_WS_Stream UcxInitWriter(CP_Services Svcs, void *CP_Stream, return (void *)Stream; } -static DP_WSR_Stream -UcxInitWriterPerReader(CP_Services Svcs, DP_WS_Stream WS_Stream_v, - int readerCohortSize, CP_PeerCohort PeerCohort, - void **providedReaderInfo_v, void **WriterContactInfoPtr) +static DP_WSR_Stream UcxInitWriterPerReader(CP_Services Svcs, DP_WS_Stream WS_Stream_v, + int readerCohortSize, CP_PeerCohort PeerCohort, + void **providedReaderInfo_v, + void **WriterContactInfoPtr) { Ucx_WS_Stream WS_Stream = (Ucx_WS_Stream)WS_Stream_v; Ucx_WSR_Stream WSR_Stream = malloc(sizeof(*WSR_Stream)); @@ -334,8 +326,8 @@ UcxInitWriterPerReader(CP_Services Svcs, DP_WS_Stream WS_Stream_v, * structure */ pthread_mutex_lock(&ucx_wsr_mutex); - WS_Stream->Readers = realloc( - WS_Stream->Readers, sizeof(*WSR_Stream) * (WS_Stream->ReaderCount + 1)); + WS_Stream->Readers = + realloc(WS_Stream->Readers, sizeof(*WSR_Stream) * (WS_Stream->ReaderCount + 1)); WS_Stream->Readers[WS_Stream->ReaderCount] = WSR_Stream; WS_Stream->ReaderCount++; pthread_mutex_unlock(&ucx_wsr_mutex); @@ -352,37 +344,31 @@ UcxInitWriterPerReader(CP_Services Svcs, DP_WS_Stream WS_Stream_v, return WSR_Stream; } -static void UcxProvideWriterDataToReader(CP_Services Svcs, - DP_RS_Stream RS_Stream_v, - int writerCohortSize, - CP_PeerCohort PeerCohort, +static void UcxProvideWriterDataToReader(CP_Services Svcs, DP_RS_Stream RS_Stream_v, + int writerCohortSize, CP_PeerCohort PeerCohort, void **providedWriterInfo_v) { Ucx_RS_Stream RS_Stream = (Ucx_RS_Stream)RS_Stream_v; FabricState Fabric = RS_Stream->Fabric; - UcxWriterContactInfo *providedWriterInfo = - (UcxWriterContactInfo *)providedWriterInfo_v; + UcxWriterContactInfo *providedWriterInfo = (UcxWriterContactInfo *)providedWriterInfo_v; RS_Stream->PeerCohort = PeerCohort; RS_Stream->WriterCohortSize = writerCohortSize; - RS_Stream->WriterEP = - calloc(writerCohortSize, sizeof(*RS_Stream->WriterEP)); + RS_Stream->WriterEP = calloc(writerCohortSize, sizeof(*RS_Stream->WriterEP)); /* * make a copy of writer contact information (original will not be * preserved) */ - RS_Stream->WriterContactInfo = - malloc(sizeof(struct _UcxWriterContactInfo) * writerCohortSize); + RS_Stream->WriterContactInfo = malloc(sizeof(struct _UcxWriterContactInfo) * writerCohortSize); for (int i = 0; i < writerCohortSize; i++) { - RS_Stream->WriterContactInfo[i].WS_Stream = - providedWriterInfo[i]->WS_Stream; + RS_Stream->WriterContactInfo[i].WS_Stream = providedWriterInfo[i]->WS_Stream; ucp_ep_params_t ep_params; ep_params.field_mask = UCP_EP_PARAM_FIELD_REMOTE_ADDRESS; ep_params.address = providedWriterInfo[i]->Address; - ucs_status_t status = ucp_ep_create(Fabric->ucp_worker, &ep_params, - &RS_Stream->WriterEP[i]); + ucs_status_t status = + ucp_ep_create(Fabric->ucp_worker, &ep_params, &RS_Stream->WriterEP[i]); if (status != UCS_OK) { Svcs->verbose(RS_Stream->CP_Stream, DPCriticalVerbose, @@ -396,10 +382,8 @@ static void UcxProvideWriterDataToReader(CP_Services Svcs, } } -static void *UcxReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, - int Rank, long Timestep, size_t Offset, - size_t Length, void *Buffer, - void *DP_TimestepInfo) +static void *UcxReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, int Rank, long Timestep, + size_t Offset, size_t Length, void *Buffer, void *DP_TimestepInfo) { Ucx_RS_Stream RS_Stream = (Ucx_RS_Stream)Stream_v; UcxBufferHandle Info = (UcxBufferHandle)DP_TimestepInfo; @@ -407,8 +391,7 @@ static void *UcxReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, UcxCompletionHandle ret = malloc(sizeof(struct _UcxCompletionHandle)); Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, - "Performing remote read of Writer Rank %d at step %d\n", Rank, - Timestep); + "Performing remote read of Writer Rank %d at step %d\n", Rank, Timestep); if (!ret) { @@ -426,8 +409,7 @@ static void *UcxReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, } else { - Svcs->verbose(RS_Stream->CP_Stream, DPCriticalVerbose, - "Timestep info is null\n"); + Svcs->verbose(RS_Stream->CP_Stream, DPCriticalVerbose, "Timestep info is null\n"); free(ret); return NULL; } @@ -438,14 +420,12 @@ static void *UcxReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, ret->Length = Length; ret->Pending = 1; Addr = (uint8_t *)Info->Block + Offset; - Svcs->verbose( - RS_Stream->CP_Stream, DPTraceVerbose, - "Remote read target is Rank %d, EP = %p (Offset = %zi, Length = %zi)\n", - Rank, RS_Stream->WriterEP[Rank], Offset, Length); + Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, + "Remote read target is Rank %d, EP = %p (Offset = %zi, Length = %zi)\n", Rank, + RS_Stream->WriterEP[Rank], Offset, Length); ucp_rkey_h rkey_p; - ucs_status_t status = - ucp_ep_rkey_unpack(RS_Stream->WriterEP[Rank], Info->rkey, &rkey_p); + ucs_status_t status = ucp_ep_rkey_unpack(RS_Stream->WriterEP[Rank], Info->rkey, &rkey_p); if (status != UCS_OK) { Svcs->verbose(RS_Stream->CP_Stream, DPCriticalVerbose, @@ -456,26 +436,23 @@ static void *UcxReadRemoteMemory(CP_Services Svcs, DP_RS_Stream Stream_v, } ucp_request_param_t param; param.op_attr_mask = 0; - ret->req = ucp_get_nbx(RS_Stream->WriterEP[Rank], Buffer, Length, - (uint64_t)Addr, rkey_p, ¶m); + ret->req = + ucp_get_nbx(RS_Stream->WriterEP[Rank], Buffer, Length, (uint64_t)Addr, rkey_p, ¶m); status = UCS_PTR_STATUS(ret->req); if (status != UCS_OK && status != UCS_INPROGRESS) { Svcs->verbose(RS_Stream->CP_Stream, DPCriticalVerbose, - "UCX Error during ucp_get_nbx() with: %s.\n", - ucs_status_string(status)); + "UCX Error during ucp_get_nbx() with: %s.\n", ucs_status_string(status)); free(ret); return NULL; } Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, - "Posted RDMA get for Writer Rank %d for handle %p\n", Rank, - (void *)ret); + "Posted RDMA get for Writer Rank %d for handle %p\n", Rank, (void *)ret); return (ret); } -static void UcxNotifyConnFailure(CP_Services Svcs, DP_RS_Stream Stream_v, - int FailedPeerRank) +static void UcxNotifyConnFailure(CP_Services Svcs, DP_RS_Stream Stream_v, int FailedPeerRank) { /* DP_RS_Stream is the return from InitReader */ Ucx_RS_Stream Stream = (Ucx_RS_Stream)Stream_v; @@ -509,8 +486,7 @@ static int UcxWaitForCompletion(CP_Services Svcs, void *Handle_v) } else if (UCS_PTR_STATUS(Handle->req) != UCS_OK) { - Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, - "RPC failed, not a pointer"); + Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "RPC failed, not a pointer"); } else { // UCS_OK request completed immediately. Call ucx callback. @@ -525,8 +501,7 @@ static int UcxWaitForCompletion(CP_Services Svcs, void *Handle_v) return 0; } -static void UcxProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, - struct _SstData *Data, +static void UcxProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, struct _SstData *Data, struct _SstData *LocalMetadata, long Timestep, void **TimestepInfoPtr) { @@ -542,8 +517,7 @@ static void UcxProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, Entry->DP_TimestepInfo = Info; ucp_mem_map_params_t mem_map_params; - mem_map_params.field_mask = UCP_MEM_MAP_PARAM_FIELD_ADDRESS | - UCP_MEM_MAP_PARAM_FIELD_LENGTH | + mem_map_params.field_mask = UCP_MEM_MAP_PARAM_FIELD_ADDRESS | UCP_MEM_MAP_PARAM_FIELD_LENGTH | UCP_MEM_MAP_PARAM_FIELD_FLAGS; mem_map_params.address = Data->block; mem_map_params.length = Data->DataSize; @@ -551,11 +525,10 @@ static void UcxProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, status = ucp_mem_map(Fabric->ucp_context, &mem_map_params, &Entry->memh); if (status != UCS_OK) { - Svcs->verbose( - Stream->CP_Stream, DPCriticalVerbose, - "UCX Error during ucp_mem_map() with: %s. while providing timestep " - "data with block %p and access key %d.\n", - ucs_status_string(status), Info->Block, Info->rkey); + Svcs->verbose(Stream->CP_Stream, DPCriticalVerbose, + "UCX Error during ucp_mem_map() with: %s. while providing timestep " + "data with block %p and access key %d.\n", + ucs_status_string(status), Info->Block, Info->rkey); return; } @@ -564,24 +537,21 @@ static void UcxProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, status = ucp_mem_query(Entry->memh, &mem_attr); if (status != UCS_OK) { - Svcs->verbose( - Stream->CP_Stream, DPCriticalVerbose, - "UCX Error during ucp_mem_query() with: %s. while providing " - "timestep data with block %p and access key %d.\n", - ucs_status_string(status), Info->Block, Info->rkey); + Svcs->verbose(Stream->CP_Stream, DPCriticalVerbose, + "UCX Error during ucp_mem_query() with: %s. while providing " + "timestep data with block %p and access key %d.\n", + ucs_status_string(status), Info->Block, Info->rkey); return; } Data->block = mem_attr.address; - status = ucp_rkey_pack(Fabric->ucp_context, Entry->memh, &Entry->rkey, - &Entry->rkey_size); + status = ucp_rkey_pack(Fabric->ucp_context, Entry->memh, &Entry->rkey, &Entry->rkey_size); if (status != UCS_OK) { - Svcs->verbose( - Stream->CP_Stream, DPCriticalVerbose, - "UCX Error during ucp_rkey_pack() with: %s. while providing " - "timestep data with block %p and access key %d.\n", - ucs_status_string(status), Info->Block, Info->rkey); + Svcs->verbose(Stream->CP_Stream, DPCriticalVerbose, + "UCX Error during ucp_rkey_pack() with: %s. while providing " + "timestep data with block %p and access key %d.\n", + ucs_status_string(status), Info->Block, Info->rkey); return; } pthread_mutex_lock(&ucx_ts_mutex); @@ -594,22 +564,20 @@ static void UcxProvideTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, Info->Block = (uint8_t *)Data->block; Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, - "Providing timestep data with block %p and access key %d\n", - Info->Block, Info->rkey); + "Providing timestep data with block %p and access key %d\n", Info->Block, + Info->rkey); *TimestepInfoPtr = Info; } -static void UcxReleaseTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, - long Timestep) +static void UcxReleaseTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, long Timestep) { Ucx_WS_Stream Stream = (Ucx_WS_Stream)Stream_v; FabricState Fabric = Stream->Fabric; TimestepList *List = &Stream->Timesteps; TimestepList ReleaseTSL; - Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "Releasing timestep %ld\n", - Timestep); + Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "Releasing timestep %ld\n", Timestep); pthread_mutex_lock(&ucx_ts_mutex); while ((*List) && (*List)->Timestep != Timestep) @@ -635,8 +603,7 @@ static void UcxReleaseTimestep(CP_Services Svcs, DP_WS_Stream Stream_v, ucs_status_t status = ucp_mem_unmap(Fabric->ucp_context, ReleaseTSL->memh); if (status != UCS_OK) { - Svcs->verbose(Stream->CP_Stream, DPCriticalVerbose, - "UCX Error during ucp_mem_unmap: %s.\n", + Svcs->verbose(Stream->CP_Stream, DPCriticalVerbose, "UCX Error during ucp_mem_unmap: %s.\n", ucs_status_string(status)); return; } @@ -651,8 +618,7 @@ static void UcxDestroyReader(CP_Services Svcs, DP_RS_Stream RS_Stream_v) { Ucx_RS_Stream RS_Stream = (Ucx_RS_Stream)RS_Stream_v; - Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, - "Tearing down RDMA state on reader.\n"); + Svcs->verbose(RS_Stream->CP_Stream, DPTraceVerbose, "Tearing down RDMA state on reader.\n"); if (RS_Stream->Fabric) { fini_fabric(RS_Stream->Fabric); @@ -662,8 +628,7 @@ static void UcxDestroyReader(CP_Services Svcs, DP_RS_Stream RS_Stream_v) free(RS_Stream); } -static void UcxDestroyWriterPerReader(CP_Services Svcs, - DP_WSR_Stream WSR_Stream_v) +static void UcxDestroyWriterPerReader(CP_Services Svcs, DP_WSR_Stream WSR_Stream_v) { Ucx_WSR_Stream WSR_Stream = {0}; memcpy(&WSR_Stream, &WSR_Stream_v, sizeof(Ucx_WSR_Stream)); @@ -674,14 +639,13 @@ static void UcxDestroyWriterPerReader(CP_Services Svcs, { if (WS_Stream->Readers[i] == WSR_Stream) { - WS_Stream->Readers[i] = - WS_Stream->Readers[WS_Stream->ReaderCount - 1]; + WS_Stream->Readers[i] = WS_Stream->Readers[WS_Stream->ReaderCount - 1]; break; } } - WS_Stream->Readers = realloc( - WS_Stream->Readers, sizeof(*WSR_Stream) * (WS_Stream->ReaderCount - 1)); + WS_Stream->Readers = + realloc(WS_Stream->Readers, sizeof(*WSR_Stream) * (WS_Stream->ReaderCount - 1)); WS_Stream->ReaderCount--; pthread_mutex_unlock(&ucx_wsr_mutex); @@ -694,25 +658,21 @@ static void UcxDestroyWriterPerReader(CP_Services Svcs, } static FMField UcxReaderContactList[] = { - {"reader_ID", "integer", sizeof(void *), - FMOffset(UcxReaderContactInfo, RS_Stream)}, + {"reader_ID", "integer", sizeof(void *), FMOffset(UcxReaderContactInfo, RS_Stream)}, {NULL, NULL, 0, 0}}; static FMStructDescRec UcxReaderContactStructs[] = { - {"UcxReaderContactInfo", UcxReaderContactList, - sizeof(struct _UcxReaderContactInfo), NULL}, + {"UcxReaderContactInfo", UcxReaderContactList, sizeof(struct _UcxReaderContactInfo), NULL}, {NULL, NULL, 0, NULL}}; static FMField UcxBufferHandleList[] = { {"Block", "integer", sizeof(void *), FMOffset(UcxBufferHandle, Block)}, - {"rkey_size", "integer", sizeof(size_t), - FMOffset(UcxBufferHandle, rkey_size)}, + {"rkey_size", "integer", sizeof(size_t), FMOffset(UcxBufferHandle, rkey_size)}, {"rkey", "char[rkey_size]", sizeof(char), FMOffset(UcxBufferHandle, rkey)}, {NULL, NULL, 0, 0}}; static FMStructDescRec UcxBufferHandleStructs[] = { - {"UcxBufferHandle", UcxBufferHandleList, sizeof(struct _UcxBufferHandle), - NULL}, + {"UcxBufferHandle", UcxBufferHandleList, sizeof(struct _UcxBufferHandle), NULL}, {NULL, NULL, 0, NULL}}; static void UcxDestroyWriter(CP_Services Svcs, DP_WS_Stream WS_Stream_v) @@ -727,8 +687,7 @@ static void UcxDestroyWriter(CP_Services Svcs, DP_WS_Stream WS_Stream_v) UcxDestroyWriterPerReader(Svcs, WS_Stream->Readers[0]); } - Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, - "Releasing remaining timesteps.\n"); + Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, "Releasing remaining timesteps.\n"); pthread_mutex_lock(&ucx_ts_mutex); while (WS_Stream->Timesteps) @@ -740,8 +699,7 @@ static void UcxDestroyWriter(CP_Services Svcs, DP_WS_Stream WS_Stream_v) } pthread_mutex_unlock(&ucx_ts_mutex); - Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, - "Tearing down RDMA state on writer.\n"); + Svcs->verbose(WS_Stream->CP_Stream, DPTraceVerbose, "Tearing down RDMA state on writer.\n"); if (WS_Stream->Fabric) { @@ -753,22 +711,18 @@ static void UcxDestroyWriter(CP_Services Svcs, DP_WS_Stream WS_Stream_v) } static FMField UcxWriterContactList[] = { - {"writer_ID", "integer", sizeof(void *), - FMOffset(UcxWriterContactInfo, WS_Stream)}, + {"writer_ID", "integer", sizeof(void *), FMOffset(UcxWriterContactInfo, WS_Stream)}, {"Length", "integer", sizeof(int), FMOffset(UcxWriterContactInfo, Length)}, - {"Address", "integer[Length]", sizeof(char), - FMOffset(UcxWriterContactInfo, Address)}, + {"Address", "integer[Length]", sizeof(char), FMOffset(UcxWriterContactInfo, Address)}, {NULL, NULL, 0, 0}}; static FMStructDescRec UcxWriterContactStructs[] = { - {"UcxWriterContactInfo", UcxWriterContactList, - sizeof(struct _UcxWriterContactInfo), NULL}, + {"UcxWriterContactInfo", UcxWriterContactList, sizeof(struct _UcxWriterContactInfo), NULL}, {NULL, NULL, 0, NULL}}; static struct _CP_DP_Interface UcxDPInterface = {0}; -static int UcxGetPriority(CP_Services Svcs, void *CP_Stream, - struct _SstParams *Params) +static int UcxGetPriority(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params) { /* TODO: Improve priority algorithm */ int ux_dp_priority = 10; @@ -785,14 +739,13 @@ static void UcxUnGetPriority(CP_Services Svcs, void *CP_Stream) Svcs->verbose(CP_Stream, DPPerStepVerbose, "UCX Dataplane unloading\n"); } -static void UcxTimestepArrived(CP_Services Svcs, DP_RS_Stream Stream_v, - long Timestep, SstPreloadModeType PreloadMode) +static void UcxTimestepArrived(CP_Services Svcs, DP_RS_Stream Stream_v, long Timestep, + SstPreloadModeType PreloadMode) { Ucx_RS_Stream Stream = (Ucx_RS_Stream)Stream_v; - Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, - "%s with Timestep = %li, PreloadMode = %d\n", __func__, - Timestep, PreloadMode); + Svcs->verbose(Stream->CP_Stream, DPTraceVerbose, "%s with Timestep = %li, PreloadMode = %d\n", + __func__, Timestep, PreloadMode); } extern NO_SANITIZE_THREAD CP_DP_Interface LoadUcxDP() diff --git a/source/adios2/toolkit/sst/dp_interface.h b/source/adios2/toolkit/sst/dp_interface.h index 089df66d95..6608211bf8 100644 --- a/source/adios2/toolkit/sst/dp_interface.h +++ b/source/adios2/toolkit/sst/dp_interface.h @@ -75,10 +75,8 @@ typedef void *CP_PeerCohort; * CP). */ typedef DP_RS_Stream (*CP_DP_InitReaderFunc)(CP_Services Svcs, void *CP_Stream, - void **ReaderContactInfoPtr, - struct _SstParams *Params, - attr_list WriterContactAttributes, - SstStats Stats); + void **ReaderContactInfoPtr, struct _SstParams *Params, + attr_list WriterContactAttributes, SstStats Stats); /*! * CP_DP_DestroyReaderFunc is the type of a dataplane reader-side @@ -100,8 +98,8 @@ typedef void (*CP_DP_DestroyReaderFunc)(CP_Services Svcs, DP_RS_Stream Reader); * initiation. */ typedef DP_WS_Stream (*CP_DP_InitWriterFunc)(CP_Services Svcs, void *CP_Stream, - struct _SstParams *Params, - attr_list DPAttrs, SstStats Stats); + struct _SstParams *Params, attr_list DPAttrs, + SstStats Stats); /*! * CP_DP_DestroyWriterFunc is the type of a dataplane writer-side @@ -132,18 +130,18 @@ typedef void (*CP_DP_DestroyWriterFunc)(CP_Services Svcs, DP_RS_Stream Writer); * ProvideWriterDataToReader(). The `peerCohort` argument is a handle to * the reader-side peer cohort for use in peer-to-peer messaging. */ -typedef DP_WSR_Stream (*CP_DP_InitWriterPerReaderFunc)( - CP_Services Svcs, DP_WS_Stream Stream, int ReaderCohortSize, - CP_PeerCohort PeerCohort, void **ProvidedReaderInfo, - void **WriterContactInfoPtr); +typedef DP_WSR_Stream (*CP_DP_InitWriterPerReaderFunc)(CP_Services Svcs, DP_WS_Stream Stream, + int ReaderCohortSize, + CP_PeerCohort PeerCohort, + void **ProvidedReaderInfo, + void **WriterContactInfoPtr); /*! * CP_DP_DestroyWriterPerReaderFunc is the type of a dataplane writer-side * stream destruction function. Its should shutdown and deallocate * dataplane resources associated with a writer-side stream. */ -typedef void (*CP_DP_DestroyWriterPerReaderFunc)(CP_Services Svcs, - DP_RS_Stream Writer); +typedef void (*CP_DP_DestroyWriterPerReaderFunc)(CP_Services Svcs, DP_RS_Stream Writer); /* * CP_DP_ProvideWriterDataToReaderFunc is the type of a dataplane reader-side @@ -158,10 +156,8 @@ typedef void (*CP_DP_DestroyWriterPerReaderFunc)(CP_Services Svcs, * argument is a handle to writer-side peer cohort for use in peer-to-peer * messaging. */ -typedef void (*CP_DP_ProvideWriterDataToReaderFunc)(CP_Services Svcs, - DP_RS_Stream Stream, - int WriterCohortSize, - CP_PeerCohort PeerCohort, +typedef void (*CP_DP_ProvideWriterDataToReaderFunc)(CP_Services Svcs, DP_RS_Stream Stream, + int WriterCohortSize, CP_PeerCohort PeerCohort, void **ProvidedWriterInfo); /* @@ -181,9 +177,10 @@ typedef void *DP_CompletionHandle; * be value which was returned as the void* pointed to by TimestepInfoPtr on * the writer side in ProvideTimestepFunc. */ -typedef DP_CompletionHandle (*CP_DP_ReadRemoteMemoryFunc)( - CP_Services Svcs, DP_RS_Stream RS_Stream, int Rank, long Timestep, - size_t Offset, size_t Length, void *Buffer, void *DP_TimestepInfo); +typedef DP_CompletionHandle (*CP_DP_ReadRemoteMemoryFunc)(CP_Services Svcs, DP_RS_Stream RS_Stream, + int Rank, long Timestep, size_t Offset, + size_t Length, void *Buffer, + void *DP_TimestepInfo); /*! * CP_DP_WaitForCompletionFunc is the type of a dataplane function that @@ -191,8 +188,7 @@ typedef DP_CompletionHandle (*CP_DP_ReadRemoteMemoryFunc)( * CP_DP_ReadRemoteMemory call that returned its `handle` parameter. * the return value is 0 in the event that the wait failed, 1 on success. */ -typedef int (*CP_DP_WaitForCompletionFunc)(CP_Services Svcs, - DP_CompletionHandle Handle); +typedef int (*CP_DP_WaitForCompletionFunc)(CP_Services Svcs, DP_CompletionHandle Handle); /*! * CP_DP_NotifyConnFailureFunc is the type of a dataplane function which the @@ -202,8 +198,7 @@ typedef int (*CP_DP_WaitForCompletionFunc)(CP_Services Svcs, * any pending Wait operations (for ReadRemoteMemory) to complete and return * an error. */ -typedef void (*CP_DP_NotifyConnFailureFunc)(CP_Services Svcs, - DP_RS_Stream RS_Stream, +typedef void (*CP_DP_NotifyConnFailureFunc)(CP_Services Svcs, DP_RS_Stream RS_Stream, int FailedPeerRank); /*! @@ -221,10 +216,8 @@ typedef void (*CP_DP_NotifyConnFailureFunc)(CP_Services Svcs, * aggregated metadata. */ typedef void (*CP_DP_ProvideTimestepFunc)(CP_Services Svcs, DP_WS_Stream Stream, - struct _SstData *Data, - struct _SstData *LocalMetadata, - long Timestep, - void **TimestepInfoPtr); + struct _SstData *Data, struct _SstData *LocalMetadata, + long Timestep, void **TimestepInfoPtr); typedef enum { @@ -239,20 +232,16 @@ typedef enum * registered via the CP_DP_ProvideTimestepFunc will be provided to a * specific reader. */ -typedef void (*CP_DP_PerReaderTimestepRegFunc)(CP_Services Svcs, - DP_WSR_Stream Stream, - long Timestep, - SstPreloadModeType PreloadMode); +typedef void (*CP_DP_PerReaderTimestepRegFunc)(CP_Services Svcs, DP_WSR_Stream Stream, + long Timestep, SstPreloadModeType PreloadMode); /*! * CP_DP_ReaderTimestepArrivalFunc is the type of a dataplane function that * notifies DataPlane that a particular timesteps metadata has arrived on * the reader side.. */ -typedef void (*CP_DP_ReaderTimestepArrivalFunc)(CP_Services Svcs, - DP_RS_Stream Stream, - long Timestep, - SstPreloadModeType PreloadMode); +typedef void (*CP_DP_ReaderTimestepArrivalFunc)(CP_Services Svcs, DP_RS_Stream Stream, + long Timestep, SstPreloadModeType PreloadMode); /*! * CP_DP_ReadPatternLockedFunc is the type of a dataplane function @@ -260,8 +249,7 @@ typedef void (*CP_DP_ReaderTimestepArrivalFunc)(CP_Services Svcs, * that his read pattern will not change. This is only called if the * writer has also specified that his write geometry will not change. */ -typedef void (*CP_DP_ReadPatternLockedFunc)(CP_Services Svcs, - DP_WSR_Stream Stream, +typedef void (*CP_DP_ReadPatternLockedFunc)(CP_Services Svcs, DP_WSR_Stream Stream, long EffectiveTimestep); /*! @@ -269,8 +257,7 @@ typedef void (*CP_DP_ReadPatternLockedFunc)(CP_Services Svcs, * that notifies writer-side DataPlane that both parties to the communication * have agreed that the read geometry will not change. */ -typedef void (*CP_DP_WSR_ReadPatternLockedFunc)(CP_Services Svcs, - DP_WSR_Stream Stream, +typedef void (*CP_DP_WSR_ReadPatternLockedFunc)(CP_Services Svcs, DP_WSR_Stream Stream, long EffectiveTimestep); /*! @@ -278,8 +265,7 @@ typedef void (*CP_DP_WSR_ReadPatternLockedFunc)(CP_Services Svcs, * that notifies reader-side DataPlane that both parties to the communication * have agreed that the read geometry will not change. */ -typedef void (*CP_DP_RS_ReadPatternLockedFunc)(CP_Services Svcs, - DP_RS_Stream Stream, +typedef void (*CP_DP_RS_ReadPatternLockedFunc)(CP_Services Svcs, DP_RS_Stream Stream, long EffectiveTimestep); /*! @@ -288,8 +274,7 @@ typedef void (*CP_DP_RS_ReadPatternLockedFunc)(CP_Services Svcs, * will no longer be the subject of remote read requests, so its resources * may be released. */ -typedef void (*CP_DP_ReleaseTimestepFunc)(CP_Services Svcs, DP_WS_Stream Stream, - long Timestep); +typedef void (*CP_DP_ReleaseTimestepFunc)(CP_Services Svcs, DP_WS_Stream Stream, long Timestep); /*! * CP_DP_PerReaderReleaseTimestepFunc is the type of a dataplane function @@ -300,8 +285,7 @@ typedef void (*CP_DP_ReleaseTimestepFunc)(CP_Services Svcs, DP_WS_Stream Stream, * receiving these calls prior to the call to the overall * ReleaseTimestepFunc. */ -typedef void (*CP_DP_PerReaderReleaseTimestepFunc)(CP_Services Svcs, - DP_WSR_Stream Stream, +typedef void (*CP_DP_PerReaderReleaseTimestepFunc)(CP_Services Svcs, DP_WSR_Stream Stream, long Timestep); /*! @@ -310,8 +294,7 @@ typedef void (*CP_DP_PerReaderReleaseTimestepFunc)(CP_Services Svcs, * will no longer be the subject of remote read requests, so its resources * may be released. */ -typedef void (*CP_DP_RSReleaseTimestepFunc)(CP_Services Svcs, - DP_RS_Stream Stream, long Timestep); +typedef void (*CP_DP_RSReleaseTimestepFunc)(CP_Services Svcs, DP_RS_Stream Stream, long Timestep); /*! * CP_DP_GetPriorityFunc is the type of a dataplane initialization @@ -325,8 +308,7 @@ typedef void (*CP_DP_RSReleaseTimestepFunc)(CP_Services Svcs, * parameters exist only to support verbosity in the DP-level * function. */ -typedef int (*CP_DP_GetPriorityFunc)(CP_Services Svcs, void *CP_Stream, - struct _SstParams *Params); +typedef int (*CP_DP_GetPriorityFunc)(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params); /*! * CP_DP_UnGetPriorityFunc is the type of a dataplane initialization @@ -351,38 +333,30 @@ struct _CP_DP_Interface CP_DP_ReadRemoteMemoryFunc readRemoteMemory; // reader-side call CP_DP_WaitForCompletionFunc waitForCompletion; // reader-side call - CP_DP_NotifyConnFailureFunc - notifyConnFailure; // only called on reader-side, for terminating - // pending reads - - CP_DP_ProvideTimestepFunc provideTimestep; // writer-side call, one per - // timestep upon provision to DP - CP_DP_PerReaderTimestepRegFunc - readerRegisterTimestep; // writer-side call, one per reader, upon - // metadata send - CP_DP_ReaderTimestepArrivalFunc - timestepArrived; // reader-side call, one per - // timestep upon metadata arrival - CP_DP_ReleaseTimestepFunc - releaseTimestep; // writer-side call, one per timestep when all readers - // are done - CP_DP_PerReaderReleaseTimestepFunc - readerReleaseTimestep; // writer-side call, one per reader when that - // reader is done - CP_DP_RSReleaseTimestepFunc - RSReleaseTimestep; // reader-side call, one per timestep when all - // readers are done + CP_DP_NotifyConnFailureFunc notifyConnFailure; // only called on reader-side, for terminating + // pending reads + + CP_DP_ProvideTimestepFunc provideTimestep; // writer-side call, one per + // timestep upon provision to DP + CP_DP_PerReaderTimestepRegFunc readerRegisterTimestep; // writer-side call, one per reader, upon + // metadata send + CP_DP_ReaderTimestepArrivalFunc timestepArrived; // reader-side call, one per + // timestep upon metadata arrival + CP_DP_ReleaseTimestepFunc releaseTimestep; // writer-side call, one per timestep when all + // readers are done + CP_DP_PerReaderReleaseTimestepFunc readerReleaseTimestep; // writer-side call, one per reader + // when that reader is done + CP_DP_RSReleaseTimestepFunc RSReleaseTimestep; // reader-side call, one per timestep when all + // readers are done CP_DP_WSR_ReadPatternLockedFunc WSRreadPatternLocked; CP_DP_RS_ReadPatternLockedFunc RSreadPatternLocked; - CP_DP_DestroyReaderFunc destroyReader; // reader-side call - CP_DP_DestroyWriterFunc destroyWriter; // writer-side call - CP_DP_DestroyWriterPerReaderFunc - destroyWriterPerReader; // writer side call, upon disconnect for each - // reader + CP_DP_DestroyReaderFunc destroyReader; // reader-side call + CP_DP_DestroyWriterFunc destroyWriter; // writer-side call + CP_DP_DestroyWriterPerReaderFunc destroyWriterPerReader; // writer side call, upon disconnect + // for each reader - CP_DP_GetPriorityFunc - getPriority; // both sides, part of DP selection process. + CP_DP_GetPriorityFunc getPriority; // both sides, part of DP selection process. CP_DP_UnGetPriorityFunc unGetPriority; }; #define DPTraceVerbose 5 @@ -394,8 +368,8 @@ struct _CP_DP_Interface typedef void (*CP_VerboseFunc)(void *CP_Stream, int Level, char *Format, ...); typedef CManager (*CP_GetCManagerFunc)(void *CP_stream); typedef SMPI_Comm (*CP_GetMPICommFunc)(void *CP_Stream); -typedef int (*CP_SendToPeerFunc)(void *CP_Stream, CP_PeerCohort PeerCohort, - int Rank, CMFormat Format, void *Data); +typedef int (*CP_SendToPeerFunc)(void *CP_Stream, CP_PeerCohort PeerCohort, int Rank, + CMFormat Format, void *Data); struct _CP_Services { CP_VerboseFunc verbose; @@ -404,7 +378,6 @@ struct _CP_Services CP_GetMPICommFunc getMPIComm; }; -CP_DP_Interface SelectDP(CP_Services Svcs, void *CP_Stream, - struct _SstParams *Params, int Rank); +CP_DP_Interface SelectDP(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params, int Rank); #endif diff --git a/source/adios2/toolkit/sst/sst.h b/source/adios2/toolkit/sst/sst.h index 2a428e491b..4099f014ff 100644 --- a/source/adios2/toolkit/sst/sst.h +++ b/source/adios2/toolkit/sst/sst.h @@ -79,23 +79,18 @@ typedef enum /* * Writer-side operations */ -extern SstStream SstWriterOpen(const char *filename, SstParams Params, - SMPI_Comm comm); +extern SstStream SstWriterOpen(const char *filename, SstParams Params, SMPI_Comm comm); extern void SstStreamDestroy(SstStream Stream); typedef void (*DataFreeFunc)(void *Data); -extern void SstProvideTimestep(SstStream s, SstData LocalMetadata, - SstData LocalData, long Timestep, - DataFreeFunc FreeData, void *FreeClientData, - SstData AttributeData, - DataFreeFunc FreeAttribute, - void *FreeAttributeClientData); -extern void -SstProvideTimestepMM(SstStream s, SstData LocalMetadata, SstData LocalData, - long Timestep, DataFreeFunc FreeData, void *FreeClientData, - SstData AttributeData, DataFreeFunc FreeAttribute, - void *FreeAttributeClientData, SstMetaMetaList MMBlocks); +extern void SstProvideTimestep(SstStream s, SstData LocalMetadata, SstData LocalData, long Timestep, + DataFreeFunc FreeData, void *FreeClientData, SstData AttributeData, + DataFreeFunc FreeAttribute, void *FreeAttributeClientData); +extern void SstProvideTimestepMM(SstStream s, SstData LocalMetadata, SstData LocalData, + long Timestep, DataFreeFunc FreeData, void *FreeClientData, + SstData AttributeData, DataFreeFunc FreeAttribute, + void *FreeAttributeClientData, SstMetaMetaList MMBlocks); extern void SstWriterClose(SstStream stream); /* SstWriterDefinitionLock is called once only, on transition from unlock to * locked definitions */ @@ -104,17 +99,14 @@ extern void SstWriterDefinitionLock(SstStream stream, long EffectiveTimestep); /* * Reader-side operations */ -extern SstStream SstReaderOpen(const char *filename, SstParams Params, - SMPI_Comm comm); -extern void SstReaderGetParams(SstStream stream, - SstMarshalMethod *WriterMarshalMethod, +extern SstStream SstReaderOpen(const char *filename, SstParams Params, SMPI_Comm comm); +extern void SstReaderGetParams(SstStream stream, SstMarshalMethod *WriterMarshalMethod, int *WriterIsRowMajor); extern SstFullMetadata SstGetCurMetadata(SstStream stream); extern SstMetaMetaList SstGetNewMetaMetaData(SstStream stream, long timestep); extern SstBlock SstGetAttributeData(SstStream stream, long timestep); -extern void *SstReadRemoteMemory(SstStream s, int rank, long timestep, - size_t offset, size_t length, void *buffer, - void *DP_TimestepInfo); +extern void *SstReadRemoteMemory(SstStream s, int rank, long timestep, size_t offset, size_t length, + void *buffer, void *DP_TimestepInfo); extern SstStatusValue SstWaitForCompletion(SstStream stream, void *completion); extern void SstReleaseStep(SstStream stream); extern SstStatusValue SstAdvanceStep(SstStream stream, const float timeout_sec); @@ -127,65 +119,49 @@ extern void SstReaderDefinitionLock(SstStream stream, long EffectiveTimestep); /* * Calls that support FFS-based marshaling, source code in cp/ffs_marshal.c */ -typedef void *(*VarSetupUpcallFunc)(void *Reader, const char *Name, - const int Type, void *Data); -typedef void (*AttrSetupUpcallFunc)(void *Reader, const char *Name, - const int Type, void *Data); -typedef void *(*ArraySetupUpcallFunc)(void *Reader, const char *Name, - const int Type, int DimsCount, - size_t *Shape, size_t *Start, - size_t *Count); -typedef void *(*MinArraySetupUpcallFunc)(void *Reader, int DimsCount, - size_t *Shape); -typedef void (*ArrayBlocksInfoUpcallFunc)(void *Reader, void *Variable, - const int Type, int WriterRank, - int DimsCount, size_t *Shape, +typedef void *(*VarSetupUpcallFunc)(void *Reader, const char *Name, const int Type, void *Data); +typedef void (*AttrSetupUpcallFunc)(void *Reader, const char *Name, const int Type, void *Data); +typedef void *(*ArraySetupUpcallFunc)(void *Reader, const char *Name, const int Type, int DimsCount, + size_t *Shape, size_t *Start, size_t *Count); +typedef void *(*MinArraySetupUpcallFunc)(void *Reader, int DimsCount, size_t *Shape); +typedef void (*ArrayBlocksInfoUpcallFunc)(void *Reader, void *Variable, const int Type, + int WriterRank, int DimsCount, size_t *Shape, size_t *Start, size_t *Count); -extern void -SstReaderInitFFSCallback(SstStream stream, void *Reader, - VarSetupUpcallFunc VarCallback, - ArraySetupUpcallFunc ArrayCallback, - MinArraySetupUpcallFunc MinArraySetupUpcall, - AttrSetupUpcallFunc AttrCallback, - ArrayBlocksInfoUpcallFunc BlocksInfoCallback); +extern void SstReaderInitFFSCallback(SstStream stream, void *Reader, VarSetupUpcallFunc VarCallback, + ArraySetupUpcallFunc ArrayCallback, + MinArraySetupUpcallFunc MinArraySetupUpcall, + AttrSetupUpcallFunc AttrCallback, + ArrayBlocksInfoUpcallFunc BlocksInfoCallback); /* * Calls that support SST-external writer-side aggregation of metadata */ -typedef void *(*AssembleMetadataUpcallFunc)(void *Writer, int CohortSize, - struct _SstData *Metadata, +typedef void *(*AssembleMetadataUpcallFunc)(void *Writer, int CohortSize, struct _SstData *Metadata, struct _SstData *AttributeData); typedef void (*FreeMetadataUpcallFunc)(void *Writer, struct _SstData *Metadata, - struct _SstData *AttributeData, - void *ClientData); -extern void -SstWriterInitMetadataCallback(SstStream stream, void *Writer, - AssembleMetadataUpcallFunc AssembleCallback, - FreeMetadataUpcallFunc FreeCallback); - -extern void SstFFSMarshal(SstStream Stream, void *Variable, const char *Name, - const int Type, size_t ElemSize, size_t DimCount, - const size_t *Shape, const size_t *Count, - const size_t *Offsets, const void *data); -extern void SstFFSMarshalAttribute(SstStream Stream, const char *Name, - const int Type, size_t ElemSize, - size_t ElemCount, const void *data); + struct _SstData *AttributeData, void *ClientData); +extern void SstWriterInitMetadataCallback(SstStream stream, void *Writer, + AssembleMetadataUpcallFunc AssembleCallback, + FreeMetadataUpcallFunc FreeCallback); + +extern void SstFFSMarshal(SstStream Stream, void *Variable, const char *Name, const int Type, + size_t ElemSize, size_t DimCount, const size_t *Shape, + const size_t *Count, const size_t *Offsets, const void *data); +extern void SstFFSMarshalAttribute(SstStream Stream, const char *Name, const int Type, + size_t ElemSize, size_t ElemCount, const void *data); /* GetDeferred calls return true if need later sync */ -extern int SstFFSGetDeferred(SstStream Stream, void *Variable, const char *Name, - size_t DimCount, const size_t *Start, - const size_t *Count, void *Data); +extern int SstFFSGetDeferred(SstStream Stream, void *Variable, const char *Name, size_t DimCount, + const size_t *Start, const size_t *Count, void *Data); /* GetDeferred calls return true if need later sync */ -extern int SstFFSGetLocalDeferred(SstStream Stream, void *Variable, - const char *Name, size_t DimCount, - const int BlockID, const size_t *Count, +extern int SstFFSGetLocalDeferred(SstStream Stream, void *Variable, const char *Name, + size_t DimCount, const int BlockID, const size_t *Count, void *Data); /* GetDeferred calls return true if need later sync */ extern void *SstFFSGetBlocksInfo(SstStream Stream, void *Variable); extern SstStatusValue SstFFSPerformGets(SstStream Stream); -extern int SstFFSWriterBeginStep(SstStream Stream, int mode, - const float timeout_sec); +extern int SstFFSWriterBeginStep(SstStream Stream, int mode, const float timeout_sec); extern void SstFFSWriterEndStep(SstStream Stream, size_t Step); #include "sst_data.h" diff --git a/source/adios2/toolkit/sst/sst_comm.cpp b/source/adios2/toolkit/sst/sst_comm.cpp index 48e74bd57e..4e1dcdda91 100644 --- a/source/adios2/toolkit/sst/sst_comm.cpp +++ b/source/adios2/toolkit/sst/sst_comm.cpp @@ -12,29 +12,29 @@ #include #include -#define CASE_FOR_EACH_TYPE(F) \ - case SMPI_INT: \ - F(int); \ - break; \ - case SMPI_CHAR: \ - F(char); \ - break; \ - case SMPI_LONG: \ - F(long); \ - break; \ - case SMPI_SIZE_T: \ - F(size_t); \ - break; \ - case SMPI_BYTE: \ - F(unsigned char); \ +#define CASE_FOR_EACH_TYPE(F) \ + case SMPI_INT: \ + F(int); \ + break; \ + case SMPI_CHAR: \ + F(char); \ + break; \ + case SMPI_LONG: \ + F(long); \ + break; \ + case SMPI_SIZE_T: \ + F(size_t); \ + break; \ + case SMPI_BYTE: \ + F(unsigned char); \ break -#define CASE_FOR_EACH_OP(F) \ - case SMPI_MAX: \ - F(adios2::helper::Comm::Op::Max); \ - break; \ - case SMPI_LAND: \ - F(adios2::helper::Comm::Op::LogicalAnd); \ +#define CASE_FOR_EACH_OP(F) \ + case SMPI_MAX: \ + F(adios2::helper::Comm::Op::Max); \ + break; \ + case SMPI_LAND: \ + F(adios2::helper::Comm::Op::LogicalAnd); \ break int SMPI_Comm_rank(SMPI_Comm comm, int *rank) @@ -55,8 +55,7 @@ int SMPI_Barrier(SMPI_Comm comm) return 0; } -int SMPI_Bcast(void *buffer, int count, SMPI_Datatype datatype, int root, - SMPI_Comm comm) +int SMPI_Bcast(void *buffer, int count, SMPI_Datatype datatype, int root, SMPI_Comm comm) { switch (datatype) { @@ -71,15 +70,12 @@ namespace { template -int SMPI_Gather_Impl(const TSend *sendbuf, int sendcount, void *recvbuf, - int recvcount, SMPI_Datatype recvtype, int root, - SMPI_Comm comm) +int SMPI_Gather_Impl(const TSend *sendbuf, int sendcount, void *recvbuf, int recvcount, + SMPI_Datatype recvtype, int root, SMPI_Comm comm) { switch (recvtype) { -#define F(type) \ - comm->Gather(sendbuf, sendcount, static_cast(recvbuf), recvcount, \ - root) +#define F(type) comm->Gather(sendbuf, sendcount, static_cast(recvbuf), recvcount, root) CASE_FOR_EACH_TYPE(F); #undef F } @@ -87,15 +83,13 @@ int SMPI_Gather_Impl(const TSend *sendbuf, int sendcount, void *recvbuf, } template -int SMPI_Gatherv_Impl(const TSend *sendbuf, int sendcount, void *recvbuf, - const size_t *recvcounts, const size_t *displs, - SMPI_Datatype recvtype, int root, SMPI_Comm comm) +int SMPI_Gatherv_Impl(const TSend *sendbuf, int sendcount, void *recvbuf, const size_t *recvcounts, + const size_t *displs, SMPI_Datatype recvtype, int root, SMPI_Comm comm) { switch (recvtype) { -#define F(type) \ - comm->Gatherv(sendbuf, sendcount, static_cast(recvbuf), \ - recvcounts, displs, root) +#define F(type) \ + comm->Gatherv(sendbuf, sendcount, static_cast(recvbuf), recvcounts, displs, root) CASE_FOR_EACH_TYPE(F); #undef F } @@ -103,13 +97,12 @@ int SMPI_Gatherv_Impl(const TSend *sendbuf, int sendcount, void *recvbuf, } template -int SMPI_Allgather_Impl(const TSend *sendbuf, int sendcount, void *recvbuf, - int recvcount, SMPI_Datatype recvtype, SMPI_Comm comm) +int SMPI_Allgather_Impl(const TSend *sendbuf, int sendcount, void *recvbuf, int recvcount, + SMPI_Datatype recvtype, SMPI_Comm comm) { switch (recvtype) { -#define F(type) \ - comm->Allgather(sendbuf, sendcount, static_cast(recvbuf), recvcount) +#define F(type) comm->Allgather(sendbuf, sendcount, static_cast(recvbuf), recvcount) CASE_FOR_EACH_TYPE(F); #undef F } @@ -118,14 +111,13 @@ int SMPI_Allgather_Impl(const TSend *sendbuf, int sendcount, void *recvbuf, template int SMPI_Allgatherv_Impl(const TSend *sendbuf, int sendcount, void *recvbuf, - const size_t *recvcounts, const size_t *displs, - SMPI_Datatype recvtype, SMPI_Comm comm) + const size_t *recvcounts, const size_t *displs, SMPI_Datatype recvtype, + SMPI_Comm comm) { switch (recvtype) { -#define F(type) \ - comm->Allgatherv(sendbuf, sendcount, static_cast(recvbuf), \ - recvcounts, displs) +#define F(type) \ + comm->Allgatherv(sendbuf, sendcount, static_cast(recvbuf), recvcounts, displs) CASE_FOR_EACH_TYPE(F); #undef F } @@ -133,8 +125,7 @@ int SMPI_Allgatherv_Impl(const TSend *sendbuf, int sendcount, void *recvbuf, } template -int SMPI_Allreduce_Impl(const T *sendbuf, T *recvbuf, int count, SMPI_Op op, - SMPI_Comm comm) +int SMPI_Allreduce_Impl(const T *sendbuf, T *recvbuf, int count, SMPI_Op op, SMPI_Comm comm) { switch (op) { @@ -146,79 +137,76 @@ int SMPI_Allreduce_Impl(const T *sendbuf, T *recvbuf, int count, SMPI_Op op, } } -int SMPI_Gather(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, - void *recvbuf, int recvcount, SMPI_Datatype recvtype, int root, - SMPI_Comm comm) +int SMPI_Gather(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, void *recvbuf, + int recvcount, SMPI_Datatype recvtype, int root, SMPI_Comm comm) { int ret = 0; switch (sendtype) { -#define F(type) \ - ret = SMPI_Gather_Impl(static_cast(sendbuf), sendcount, \ - recvbuf, recvcount, recvtype, root, comm) +#define F(type) \ + ret = SMPI_Gather_Impl(static_cast(sendbuf), sendcount, recvbuf, recvcount, \ + recvtype, root, comm) CASE_FOR_EACH_TYPE(F); #undef F } return ret; } -int SMPI_Gatherv(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, - void *recvbuf, const size_t *recvcounts, const size_t *displs, - SMPI_Datatype recvtype, int root, SMPI_Comm comm) +int SMPI_Gatherv(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, void *recvbuf, + const size_t *recvcounts, const size_t *displs, SMPI_Datatype recvtype, int root, + SMPI_Comm comm) { int ret = 0; switch (sendtype) { -#define F(type) \ - ret = SMPI_Gatherv_Impl(static_cast(sendbuf), sendcount, \ - recvbuf, recvcounts, displs, recvtype, root, comm) +#define F(type) \ + ret = SMPI_Gatherv_Impl(static_cast(sendbuf), sendcount, recvbuf, recvcounts, \ + displs, recvtype, root, comm) CASE_FOR_EACH_TYPE(F); #undef F } return ret; } -int SMPI_Allgather(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, - void *recvbuf, int recvcount, SMPI_Datatype recvtype, - SMPI_Comm comm) +int SMPI_Allgather(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, void *recvbuf, + int recvcount, SMPI_Datatype recvtype, SMPI_Comm comm) { int ret = 0; switch (sendtype) { -#define F(type) \ - ret = SMPI_Allgather_Impl(static_cast(sendbuf), sendcount, \ - recvbuf, recvcount, recvtype, comm) +#define F(type) \ + ret = SMPI_Allgather_Impl(static_cast(sendbuf), sendcount, recvbuf, recvcount, \ + recvtype, comm) CASE_FOR_EACH_TYPE(F); #undef F } return ret; } -int SMPI_Allgatherv(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, - void *recvbuf, const size_t *recvcounts, - const size_t *displs, SMPI_Datatype recvtype, +int SMPI_Allgatherv(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, void *recvbuf, + const size_t *recvcounts, const size_t *displs, SMPI_Datatype recvtype, SMPI_Comm comm) { int ret = 0; switch (sendtype) { -#define F(type) \ - ret = SMPI_Allgatherv_Impl(static_cast(sendbuf), sendcount, \ - recvbuf, recvcounts, displs, recvtype, comm) +#define F(type) \ + ret = SMPI_Allgatherv_Impl(static_cast(sendbuf), sendcount, recvbuf, recvcounts, \ + displs, recvtype, comm) CASE_FOR_EACH_TYPE(F); #undef F } return ret; } -int SMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, - SMPI_Datatype datatype, SMPI_Op op, SMPI_Comm comm) +int SMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, SMPI_Datatype datatype, + SMPI_Op op, SMPI_Comm comm) { switch (datatype) { -#define F(type) \ - SMPI_Allreduce_Impl(static_cast(sendbuf), \ - static_cast(recvbuf), count, op, comm) +#define F(type) \ + SMPI_Allreduce_Impl(static_cast(sendbuf), static_cast(recvbuf), count, \ + op, comm) CASE_FOR_EACH_TYPE(F); #undef F } diff --git a/source/adios2/toolkit/sst/sst_comm.h b/source/adios2/toolkit/sst/sst_comm.h index e703d94050..0b4e4fc553 100644 --- a/source/adios2/toolkit/sst/sst_comm.h +++ b/source/adios2/toolkit/sst/sst_comm.h @@ -37,23 +37,19 @@ typedef enum int SMPI_Comm_rank(SMPI_Comm comm, int *rank); int SMPI_Comm_size(SMPI_Comm comm, int *size); int SMPI_Barrier(SMPI_Comm comm); -int SMPI_Bcast(void *buffer, int count, SMPI_Datatype datatype, int root, - SMPI_Comm comm); -int SMPI_Gather(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, - void *recvbuf, int recvcount, SMPI_Datatype recvtype, int root, - SMPI_Comm comm); -int SMPI_Gatherv(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, - void *recvbuf, const size_t *recvcounts, const size_t *displs, - SMPI_Datatype recvtype, int root, SMPI_Comm comm); -int SMPI_Allgather(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, - void *recvbuf, int recvcount, SMPI_Datatype recvtype, - SMPI_Comm comm); -int SMPI_Allgatherv(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, - void *recvbuf, const size_t *recvcounts, - const size_t *displs, SMPI_Datatype recvtype, +int SMPI_Bcast(void *buffer, int count, SMPI_Datatype datatype, int root, SMPI_Comm comm); +int SMPI_Gather(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, void *recvbuf, + int recvcount, SMPI_Datatype recvtype, int root, SMPI_Comm comm); +int SMPI_Gatherv(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, void *recvbuf, + const size_t *recvcounts, const size_t *displs, SMPI_Datatype recvtype, int root, + SMPI_Comm comm); +int SMPI_Allgather(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, void *recvbuf, + int recvcount, SMPI_Datatype recvtype, SMPI_Comm comm); +int SMPI_Allgatherv(const void *sendbuf, int sendcount, SMPI_Datatype sendtype, void *recvbuf, + const size_t *recvcounts, const size_t *displs, SMPI_Datatype recvtype, SMPI_Comm comm); -int SMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, - SMPI_Datatype datatype, SMPI_Op op, SMPI_Comm comm); +int SMPI_Allreduce(const void *sendbuf, void *recvbuf, int count, SMPI_Datatype datatype, + SMPI_Op op, SMPI_Comm comm); #ifdef __cplusplus } diff --git a/source/adios2/toolkit/sst/sst_data.h b/source/adios2/toolkit/sst/sst_data.h index 1d46cc5232..c7031d5378 100644 --- a/source/adios2/toolkit/sst/sst_data.h +++ b/source/adios2/toolkit/sst/sst_data.h @@ -53,32 +53,32 @@ typedef struct _SstStats double RunningFanIn; } *SstStats; -#define SST_FOREACH_PARAMETER_TYPE_4ARGS(MACRO) \ - MACRO(MarshalMethod, MarshalMethod, size_t, SstMarshalBP5) \ - MACRO(verbose, Int, int, 0) \ - MACRO(RegistrationMethod, RegMethod, size_t, 0) \ - MACRO(StepDistributionMode, StepDistributionMode, size_t, StepsAllToAll) \ - MACRO(DataTransport, String, char *, NULL) \ - MACRO(WANDataTransport, String, char *, NULL) \ - MACRO(OpenTimeoutSecs, Int, int, 60) \ - MACRO(RendezvousReaderCount, Int, int, 1) \ - MACRO(QueueLimit, Int, int, 0) \ - MACRO(ReserveQueueLimit, Int, int, 0) \ - MACRO(QueueFullPolicy, QueueFullPolicy, size_t, 0) \ - MACRO(IsRowMajor, IsRowMajor, int, 0) \ - MACRO(FirstTimestepPrecious, Bool, int, 0) \ - MACRO(ControlTransport, String, char *, NULL) \ - MACRO(NetworkInterface, String, char *, NULL) \ - MACRO(ControlInterface, String, char *, NULL) \ - MACRO(DataInterface, String, char *, NULL) \ - MACRO(CPCommPattern, CPCommPattern, size_t, SstCPCommMin) \ - MACRO(CompressionMethod, CompressionMethod, size_t, 0) \ - MACRO(AlwaysProvideLatestTimestep, Bool, int, 0) \ - MACRO(SpeculativePreloadMode, SpecPreloadMode, int, SpecPreloadAuto) \ - MACRO(SpecAutoNodeThreshold, Int, int, 1) \ - MACRO(ReaderShortCircuitReads, Bool, int, 0) \ - MACRO(StatsLevel, Int, int, 0) \ - MACRO(UseOneTimeAttributes, Bool, int, 0) \ +#define SST_FOREACH_PARAMETER_TYPE_4ARGS(MACRO) \ + MACRO(MarshalMethod, MarshalMethod, size_t, SstMarshalBP5) \ + MACRO(verbose, Int, int, 0) \ + MACRO(RegistrationMethod, RegMethod, size_t, 0) \ + MACRO(StepDistributionMode, StepDistributionMode, size_t, StepsAllToAll) \ + MACRO(DataTransport, String, char *, NULL) \ + MACRO(WANDataTransport, String, char *, NULL) \ + MACRO(OpenTimeoutSecs, Int, int, 60) \ + MACRO(RendezvousReaderCount, Int, int, 1) \ + MACRO(QueueLimit, Int, int, 0) \ + MACRO(ReserveQueueLimit, Int, int, 0) \ + MACRO(QueueFullPolicy, QueueFullPolicy, size_t, 0) \ + MACRO(IsRowMajor, IsRowMajor, int, 0) \ + MACRO(FirstTimestepPrecious, Bool, int, 0) \ + MACRO(ControlTransport, String, char *, NULL) \ + MACRO(NetworkInterface, String, char *, NULL) \ + MACRO(ControlInterface, String, char *, NULL) \ + MACRO(DataInterface, String, char *, NULL) \ + MACRO(CPCommPattern, CPCommPattern, size_t, SstCPCommMin) \ + MACRO(CompressionMethod, CompressionMethod, size_t, 0) \ + MACRO(AlwaysProvideLatestTimestep, Bool, int, 0) \ + MACRO(SpeculativePreloadMode, SpecPreloadMode, int, SpecPreloadAuto) \ + MACRO(SpecAutoNodeThreshold, Int, int, 1) \ + MACRO(ReaderShortCircuitReads, Bool, int, 0) \ + MACRO(StatsLevel, Int, int, 0) \ + MACRO(UseOneTimeAttributes, Bool, int, 0) \ MACRO(ControlModule, String, char *, NULL) typedef enum diff --git a/source/adios2/toolkit/sst/util/sst_conn_tool.c b/source/adios2/toolkit/sst/util/sst_conn_tool.c index f49ceb26d3..f775c53f5e 100644 --- a/source/adios2/toolkit/sst/util/sst_conn_tool.c +++ b/source/adios2/toolkit/sst/util/sst_conn_tool.c @@ -76,8 +76,7 @@ static const char *optstring = "hlcifs"; void displayHelp() { - fprintf(stderr, - "sst_conn_tool - Diagnostics for ADIOS2/SST connections\n\n"); + fprintf(stderr, "sst_conn_tool - Diagnostics for ADIOS2/SST connections\n\n"); fprintf(stderr, "Usage: sst_conn_tool { -l | -c } [options]\n"); fprintf(stderr, " -l,--listen Display connection parameters and wait for " "an SST connection (default)\n"); @@ -94,22 +93,21 @@ void displayHelp() fprintf(stderr, " -h,--help Display this message\n\n"); } -static char *envHelp = - "\tThe following environment variables can impact ADIOS2_IP_CONFIG " - "operation:\n" - "\t\tADIOS2_IP - Publish the specified IP address " - "for " - "contact\n" - "\t\tADIOS2_HOSTNAME - Publish the specified hostname for contact\n" - "\t\tADIOS2_USE_HOSTNAME - Publish a hostname preferentially " - "over IP " - "address\n" - "\t\tADIOS2_INTERFACE - Use the IP address associated with the " - "specified network interface\n" - "\t\tADIOS2_PORT_RANGE - Use a port within the specified " - "range \"low:high\",\n" - "\t\t or specify \"any\" to let the OS " - "choose\n"; +static char *envHelp = "\tThe following environment variables can impact ADIOS2_IP_CONFIG " + "operation:\n" + "\t\tADIOS2_IP - Publish the specified IP address " + "for " + "contact\n" + "\t\tADIOS2_HOSTNAME - Publish the specified hostname for contact\n" + "\t\tADIOS2_USE_HOSTNAME - Publish a hostname preferentially " + "over IP " + "address\n" + "\t\tADIOS2_INTERFACE - Use the IP address associated with the " + "specified network interface\n" + "\t\tADIOS2_PORT_RANGE - Use a port within the specified " + "range \"low:high\",\n" + "\t\t or specify \"any\" to let the OS " + "choose\n"; static void do_listen(); static void do_connect(); @@ -162,8 +160,7 @@ int main(int argc, char **argv) } if (listen + connect > 1) { - fprintf(stderr, - "Only one of --listen or --connect can be specified\n\n"); + fprintf(stderr, "Only one of --listen or --connect can be specified\n\n"); displayHelp(); return 1; } @@ -185,8 +182,8 @@ int main(int argc, char **argv) } } -static void DecodeAttrList(const char *attrs, char **in_transport, char **in_ip, - char **in_hostname, int *in_port) +static void DecodeAttrList(const char *attrs, char **in_transport, char **in_ip, char **in_hostname, + int *in_port) { attr_list listen_info = attr_list_from_string(attrs); char *transport = NULL; @@ -253,8 +250,7 @@ static void ConnToolCallback(int dataID, const char *attrs, const char *data) } else { - printf( - "\n\tWarning, unknown control network transport operating\n"); + printf("\n\tWarning, unknown control network transport operating\n"); } printf("\tSst connection tool waiting for connection...\n\n"); } @@ -264,18 +260,15 @@ static void ConnToolCallback(int dataID, const char *attrs, const char *data) * parameters */ if (!transport) { - printf("\n\tSst reader at IP %s, listen TCP/IP port %d\n\n", IP, - port); + printf("\n\tSst reader at IP %s, listen TCP/IP port %d\n\n", IP, port); } else if (strcmp(transport, "enet") == 0) { - printf("\n\tSst reader at IP %s, listening UDP port %d\n\n", IP, - port); + printf("\n\tSst reader at IP %s, listening UDP port %d\n\n", IP, port); } else { - printf( - "\n\tWarning, unknown control network transport operating\n"); + printf("\n\tWarning, unknown control network transport operating\n"); } } else if (dataID == 2) @@ -294,8 +287,7 @@ static void ConnToolCallback(int dataID, const char *attrs, const char *data) } else { - printf( - "\n\tWarning, unknown control network transport operating\n"); + printf("\n\tWarning, unknown control network transport operating\n"); } } } diff --git a/source/adios2/toolkit/transport/Transport.cpp b/source/adios2/toolkit/transport/Transport.cpp index 024247afab..a0018992b7 100644 --- a/source/adios2/toolkit/transport/Transport.cpp +++ b/source/adios2/toolkit/transport/Transport.cpp @@ -17,8 +17,7 @@ namespace adios2 { -Transport::Transport(const std::string type, const std::string library, - helper::Comm const &comm) +Transport::Transport(const std::string type, const std::string library, helper::Comm const &comm) : m_Type(type), m_Library(library), m_Comm(comm) { } @@ -27,8 +26,7 @@ void Transport::WriteV(const core::iovec *iov, const int iovcnt, size_t start) { if (iovcnt > 0) { - Write(static_cast(iov[0].iov_base), iov[0].iov_len, - start); + Write(static_cast(iov[0].iov_base), iov[0].iov_len, start); for (int c = 1; c < iovcnt; ++c) { Write(static_cast(iov[c].iov_base), iov[c].iov_len); @@ -44,13 +42,12 @@ void Transport::InitProfiler(const Mode openMode, const TimeUnit timeUnit) { m_Profiler.m_IsActive = true; - m_Profiler.m_Timers.emplace(std::make_pair( - "open", profiling::Timer("open", TimeUnit::Microseconds))); + m_Profiler.m_Timers.emplace( + std::make_pair("open", profiling::Timer("open", TimeUnit::Microseconds))); if (openMode == Mode::Write) { - m_Profiler.m_Timers.emplace("write", - profiling::Timer("write", timeUnit)); + m_Profiler.m_Timers.emplace("write", profiling::Timer("write", timeUnit)); m_Profiler.m_Bytes.emplace("write", 0); } @@ -61,8 +58,7 @@ void Transport::InitProfiler(const Mode openMode, const TimeUnit timeUnit) "append", profiling::Timer("append", timeUnit)); m_Profiler.Bytes.emplace("append", 0); */ - m_Profiler.m_Timers.emplace("write", - profiling::Timer("write", timeUnit)); + m_Profiler.m_Timers.emplace("write", profiling::Timer("write", timeUnit)); m_Profiler.m_Bytes.emplace("write", 0); @@ -76,33 +72,28 @@ void Transport::InitProfiler(const Mode openMode, const TimeUnit timeUnit) m_Profiler.m_Bytes.emplace("read", 0); } - m_Profiler.m_Timers.emplace( - "close", profiling::Timer("close", TimeUnit::Microseconds)); + m_Profiler.m_Timers.emplace("close", profiling::Timer("close", TimeUnit::Microseconds)); } void Transport::OpenChain(const std::string &name, const Mode openMode, - const helper::Comm &chainComm, const bool async, - const bool directio) + const helper::Comm &chainComm, const bool async, const bool directio) { - std::invalid_argument("ERROR: " + m_Name + " transport type " + m_Type + - " using library " + m_Library + - " doesn't implement the OpenChain function\n"); + std::invalid_argument("ERROR: " + m_Name + " transport type " + m_Type + " using library " + + m_Library + " doesn't implement the OpenChain function\n"); } void Transport::SetParameters(const Params ¶meters) {} void Transport::SetBuffer(char * /*buffer*/, size_t /*size*/) { - std::invalid_argument("ERROR: " + m_Name + " transport type " + m_Type + - " using library " + m_Library + - " doesn't implement the SetBuffer function\n"); + std::invalid_argument("ERROR: " + m_Name + " transport type " + m_Type + " using library " + + m_Library + " doesn't implement the SetBuffer function\n"); } void Transport::Flush() { - std::invalid_argument("ERROR: " + m_Name + " transport type " + m_Type + - " using library " + m_Library + - " doesn't implement the Flush function\n"); + std::invalid_argument("ERROR: " + m_Name + " transport type " + m_Type + " using library " + + m_Library + " doesn't implement the Flush function\n"); } size_t Transport::GetSize() { return 0; } @@ -135,9 +126,9 @@ void Transport::CheckName() const { if (m_Name.empty()) { - helper::Throw( - "Toolkit", "transport::Transport", "CheckName", - "name can't be empty for " + m_Library + " transport "); + helper::Throw("Toolkit", "transport::Transport", "CheckName", + "name can't be empty for " + m_Library + + " transport "); } } diff --git a/source/adios2/toolkit/transport/Transport.h b/source/adios2/toolkit/transport/Transport.h index 30246cdcd8..611b7c5f28 100644 --- a/source/adios2/toolkit/transport/Transport.h +++ b/source/adios2/toolkit/transport/Transport.h @@ -29,13 +29,13 @@ class Transport { public: - const std::string m_Type; ///< transport type from derived class - const std::string m_Library; ///< library implementation (POSIX, Mdtm, etc.) - std::string m_Name; ///< from Open, unique identifier (e.g. filename) + const std::string m_Type; ///< transport type from derived class + const std::string m_Library; ///< library implementation (POSIX, Mdtm, etc.) + std::string m_Name; ///< from Open, unique identifier (e.g. filename) Mode m_OpenMode = Mode::Undefined; ///< at Open from ADIOSTypes.h - bool m_IsOpen = false; ///< true: open for communication, false: unreachable - helper::Comm const &m_Comm; ///< current multi-process communicator - profiling::IOChrono m_Profiler; ///< profiles Open, Write/Read, Close + bool m_IsOpen = false; ///< true: open for communication, false: unreachable + helper::Comm const &m_Comm; ///< current multi-process communicator + profiling::IOChrono m_Profiler; ///< profiles Open, Write/Read, Close struct Status { @@ -50,8 +50,7 @@ class Transport * @param type from derived class * @param comm passed to m_Comm */ - Transport(const std::string type, const std::string library, - helper::Comm const &comm); + Transport(const std::string type, const std::string library, helper::Comm const &comm); virtual ~Transport() = default; @@ -64,8 +63,7 @@ class Transport * @param openMode * @param async */ - virtual void Open(const std::string &name, const Mode openMode, - const bool async = false, + virtual void Open(const std::string &name, const Mode openMode, const bool async = false, const bool directio = false) = 0; /** @@ -77,10 +75,8 @@ class Transport * @param chainComm * @param async */ - virtual void OpenChain(const std::string &name, Mode openMode, - const helper::Comm &chainComm, - const bool async = false, - const bool directio = false); + virtual void OpenChain(const std::string &name, Mode openMode, const helper::Comm &chainComm, + const bool async = false, const bool directio = false); /** * If OS buffered (FILE* or fstream), sets the buffer size @@ -103,8 +99,7 @@ class Transport * @param start starting position for writing (to allow rewind), if not * passed then start at current stream position */ - virtual void Write(const char *buffer, size_t size, - size_t start = MaxSizeT) = 0; + virtual void Write(const char *buffer, size_t size, size_t start = MaxSizeT) = 0; /** * Writes to transport, writev version. Note that size is non-const due to @@ -114,8 +109,7 @@ class Transport * @param start starting position for writing (to allow rewind), if not * passed then start at current stream position */ - virtual void WriteV(const core::iovec *iov, const int iovcnt, - size_t start = MaxSizeT); + virtual void WriteV(const core::iovec *iov, const int iovcnt, size_t start = MaxSizeT); /** * Reads from transport "size" bytes from a certain position. Note that size diff --git a/source/adios2/toolkit/transport/file/FileAWSSDK.cpp b/source/adios2/toolkit/transport/file/FileAWSSDK.cpp index e84aef1bd7..1e84738b83 100644 --- a/source/adios2/toolkit/transport/file/FileAWSSDK.cpp +++ b/source/adios2/toolkit/transport/file/FileAWSSDK.cpp @@ -77,8 +77,7 @@ void FileAWSSDK::SetParameters(const Params ¶ms) s3ClientConfig->enableEndpointDiscovery = false; s3Client = new Aws::S3::S3Client(*s3ClientConfig); - std::cout << "AWS Transport created with endpoint = '" << m_Endpoint << "'" - << std::endl; + std::cout << "AWS Transport created with endpoint = '" << m_Endpoint << "'" << std::endl; } void FileAWSSDK::WaitForOpen() @@ -99,8 +98,7 @@ void FileAWSSDK::SetUpCache() { if (!m_CachePath.empty()) { - if (helper::EndsWith(m_ObjectName, "md.idx") || - helper::EndsWith(m_ObjectName, "md.0") || + if (helper::EndsWith(m_ObjectName, "md.idx") || helper::EndsWith(m_ObjectName, "md.0") || helper::EndsWith(m_ObjectName, "mmd.0")) { m_CachingThisFile = true; @@ -109,13 +107,11 @@ void FileAWSSDK::SetUpCache() if (m_CachingThisFile) { - std::string const ep = - std::regex_replace(m_Endpoint, std::regex("/|:"), "_"); + std::string const ep = std::regex_replace(m_Endpoint, std::regex("/|:"), "_"); m_CacheFileWrite = new FileFStream(m_Comm); - const std::string path(m_CachePath + PathSeparator + ep + - PathSeparator + m_BucketName + PathSeparator + - m_ObjectName); + const std::string path(m_CachePath + PathSeparator + ep + PathSeparator + m_BucketName + + PathSeparator + m_ObjectName); m_CacheFilePath = path; const auto lastPathSeparator(path.find_last_of(PathSeparator)); if (lastPathSeparator != std::string::npos) @@ -149,17 +145,16 @@ void FileAWSSDK::SetUpCache() } } -void FileAWSSDK::Open(const std::string &name, const Mode openMode, - const bool async, const bool directio) +void FileAWSSDK::Open(const std::string &name, const Mode openMode, const bool async, + const bool directio) { m_Name = name; size_t pos = name.find(PathSeparator); if (pos == std::string::npos) { - helper::Throw( - "Toolkit", "transport::file::FileAWSSDK", "Open", - "invalid 'bucket/object' name " + name); + helper::Throw("Toolkit", "transport::file::FileAWSSDK", "Open", + "invalid 'bucket/object' name " + name); } m_BucketName = name.substr(0, pos); m_ObjectName = name.substr(pos + 1); @@ -170,9 +165,8 @@ void FileAWSSDK::Open(const std::string &name, const Mode openMode, case Mode::Write: case Mode::Append: - helper::Throw( - "Toolkit", "transport::file::FileAWSSDK", "Open", - "does not support writing yet " + m_Name); + helper::Throw("Toolkit", "transport::file::FileAWSSDK", "Open", + "does not support writing yet " + m_Name); break; case Mode::Read: { @@ -182,16 +176,14 @@ void FileAWSSDK::Open(const std::string &name, const Mode openMode, head_object_request.SetBucket(m_BucketName); head_object_request.SetKey(m_ObjectName); - std::cout << "S3 HeadObjectRequests bucket='" - << head_object_request.GetBucket() << "' object = '" - << head_object_request.GetKey() << "'" << std::endl; + std::cout << "S3 HeadObjectRequests bucket='" << head_object_request.GetBucket() + << "' object = '" << head_object_request.GetKey() << "'" << std::endl; head_object = s3Client->HeadObject(head_object_request); if (!head_object.IsSuccess()) { - helper::Throw( - "Toolkit", "transport::file::FileAWSSDK", "Open", - "'bucket/object' " + m_Name + " does not exist "); + helper::Throw("Toolkit", "transport::file::FileAWSSDK", "Open", + "'bucket/object' " + m_Name + " does not exist "); } else { @@ -206,8 +198,7 @@ void FileAWSSDK::Open(const std::string &name, const Mode openMode, break; } default: - CheckFile("unknown open mode for file " + m_Name + - ", in call to AWSSDK open"); + CheckFile("unknown open mode for file " + m_Name + ", in call to AWSSDK open"); } if (!m_IsOpening) @@ -217,15 +208,13 @@ void FileAWSSDK::Open(const std::string &name, const Mode openMode, } } -void FileAWSSDK::OpenChain(const std::string &name, Mode openMode, - const helper::Comm &chainComm, const bool async, - const bool directio) +void FileAWSSDK::OpenChain(const std::string &name, Mode openMode, const helper::Comm &chainComm, + const bool async, const bool directio) { int token = 1; if (chainComm.Rank() > 0) { - chainComm.Recv(&token, 1, chainComm.Rank() - 1, 0, - "Chain token in FileAWSSDK::OpenChain"); + chainComm.Recv(&token, 1, chainComm.Rank() - 1, 0, "Chain token in FileAWSSDK::OpenChain"); } Open(name, openMode, async, directio); @@ -239,9 +228,8 @@ void FileAWSSDK::OpenChain(const std::string &name, Mode openMode, void FileAWSSDK::Write(const char *buffer, size_t size, size_t start) { - helper::Throw( - "Toolkit", "transport::file::FileAWSSDK", "Write", - "does not support writing yet " + m_Name); + helper::Throw("Toolkit", "transport::file::FileAWSSDK", "Write", + "does not support writing yet " + m_Name); } void FileAWSSDK::Read(char *buffer, size_t size, size_t start) @@ -255,8 +243,7 @@ void FileAWSSDK::Read(char *buffer, size_t size, size_t start) helper::Throw( "Toolkit", "transport::file::FileAWSSDK", "Read", "couldn't move to start position " + std::to_string(start) + - " beyond the size of " + m_Name + " which is " + - std::to_string(m_Size)); + " beyond the size of " + m_Name + " which is " + std::to_string(m_Size)); } m_SeekPos = start; errno = 0; @@ -265,19 +252,18 @@ void FileAWSSDK::Read(char *buffer, size_t size, size_t start) if (m_SeekPos + size > m_Size) { - helper::Throw( - "Toolkit", "transport::file::FileAWSSDK", "Read", - "can't read " + std::to_string(size) + " bytes from position " + - std::to_string(m_SeekPos) + " from " + m_Name + - " whose size is " + std::to_string(m_Size)); + helper::Throw("Toolkit", "transport::file::FileAWSSDK", "Read", + "can't read " + std::to_string(size) + + " bytes from position " + + std::to_string(m_SeekPos) + " from " + m_Name + + " whose size is " + std::to_string(m_Size)); } if (m_IsCached) { m_CacheFileRead->Read(buffer, size, m_SeekPos); - std::cout << "Read from cache " << m_CacheFileRead->m_Name - << " start = " << m_SeekPos << " size = " << size - << std::endl; + std::cout << "Read from cache " << m_CacheFileRead->m_Name << " start = " << m_SeekPos + << " size = " << size << std::endl; return; } @@ -296,15 +282,13 @@ void FileAWSSDK::Read(char *buffer, size_t size, size_t start) helper::Throw( "Toolkit", "transport::file::FileAWSSDK", "Read", "'bucket/object' " + m_Name + ", range " + range.str() + - "GetObject: " + err.GetExceptionName() + ": " + - err.GetMessage()); + "GetObject: " + err.GetExceptionName() + ": " + err.GetMessage()); } else { - std::cout << "Successfully retrieved '" << m_ObjectName << "' from '" - << m_BucketName << "'." - << "\nObject length = " - << outcome.GetResult().GetContentLength() + std::cout << "Successfully retrieved '" << m_ObjectName << "' from '" << m_BucketName + << "'." + << "\nObject length = " << outcome.GetResult().GetContentLength() << "\nRange requested = " << range.str() << std::endl; auto body = outcome.GetResult().GetBody().rdbuf(); body->sgetn(buffer, size); @@ -313,9 +297,8 @@ void FileAWSSDK::Read(char *buffer, size_t size, size_t start) if (m_CachingThisFile) { m_CacheFileWrite->Write(buffer, size, m_SeekPos); - std::cout << "Written to cache " << m_CacheFileWrite->m_Name - << " start = " << m_SeekPos << " size = " << size - << std::endl; + std::cout << "Written to cache " << m_CacheFileWrite->m_Name << " start = " << m_SeekPos + << " size = " << size << std::endl; } } } @@ -383,8 +366,8 @@ void FileAWSSDK::CheckFile(const std::string hint) const { if (!head_object.IsSuccess()) { - helper::Throw( - "Toolkit", "transport::file::FileAWSSDK", "CheckFile", hint); + helper::Throw("Toolkit", "transport::file::FileAWSSDK", "CheckFile", + hint); } } @@ -406,9 +389,8 @@ void FileAWSSDK::Seek(const size_t start) void FileAWSSDK::Truncate(const size_t length) { - helper::Throw( - "Toolkit", "transport::file::FileAWSSDK", "Truncate", - "does not support truncating " + m_Name); + helper::Throw("Toolkit", "transport::file::FileAWSSDK", "Truncate", + "does not support truncating " + m_Name); } void FileAWSSDK::MkDir(const std::string &fileName) {} diff --git a/source/adios2/toolkit/transport/file/FileAWSSDK.h b/source/adios2/toolkit/transport/file/FileAWSSDK.h index 552251738d..e55e04d2f1 100644 --- a/source/adios2/toolkit/transport/file/FileAWSSDK.h +++ b/source/adios2/toolkit/transport/file/FileAWSSDK.h @@ -44,19 +44,17 @@ class FileAWSSDK : public Transport void SetParameters(const Params ¶meters); - void Open(const std::string &name, const Mode openMode, - const bool async = false, const bool directio = false) final; + void Open(const std::string &name, const Mode openMode, const bool async = false, + const bool directio = false) final; - void OpenChain(const std::string &name, Mode openMode, - const helper::Comm &chainComm, const bool async = false, - const bool directio = false) final; + void OpenChain(const std::string &name, Mode openMode, const helper::Comm &chainComm, + const bool async = false, const bool directio = false) final; void Write(const char *buffer, size_t size, size_t start = MaxSizeT) final; #ifdef REALLY_WANT_WRITEV /* Actual writev() function, inactive for now */ - void WriteV(const core::iovec *iov, const int iovcnt, - size_t start = MaxSizeT) final; + void WriteV(const core::iovec *iov, const int iovcnt, size_t start = MaxSizeT) final; #endif void Read(char *buffer, size_t size, size_t start = MaxSizeT) final; diff --git a/source/adios2/toolkit/transport/file/FileDaos.cpp b/source/adios2/toolkit/transport/file/FileDaos.cpp index 43545d617f..fa4e8eac68 100644 --- a/source/adios2/toolkit/transport/file/FileDaos.cpp +++ b/source/adios2/toolkit/transport/file/FileDaos.cpp @@ -53,9 +53,9 @@ void GetUUIDFromEnv(const std::string &env, uuid_t &uuidValue) } else { - helper::Throw( - "Toolkit", "transport::file::FileDaos", "GetUUIDFromEnv", - "Error: " + env + " environment variable not found"); + helper::Throw("Toolkit", "transport::file::FileDaos", + "GetUUIDFromEnv", + "Error: " + env + " environment variable not found"); } } @@ -67,8 +67,7 @@ void CheckDAOSReturnCodeF(int rc, const char *file, int line) std::string theFile(file); helper::Throw( "Toolkit", "transport::file::FileDaos", "CheckDAOSReturnCodeF", - "ERROR: DAOS: " + daosErr + " " + theFile + " " + - std::to_string(line)); + "ERROR: DAOS: " + daosErr + " " + theFile + " " + std::to_string(line)); } } } @@ -156,9 +155,8 @@ class FileDaos::Impl if (Mount) { - helper::Throw( - "Toolkit", "transport::file::FileDaos", "InitMount", - "Mount handle already exists"); + helper::Throw("Toolkit", "transport::file::FileDaos", + "InitMount", "Mount handle already exists"); } rc = daos_init(); @@ -185,11 +183,9 @@ class FileDaos::Impl { #if DAOS_API_VERSION_MAJOR == 2 - rc = daos_pool_connect(uuid_c, Group.c_str(), poolFlags, &poh, NULL, - NULL); + rc = daos_pool_connect(uuid_c, Group.c_str(), poolFlags, &poh, NULL, NULL); #else - rc = daos_pool_connect(UUID, Group.c_str(), poolFlags, &poh, NULL, - NULL); + rc = daos_pool_connect(UUID, Group.c_str(), poolFlags, &poh, NULL, NULL); #endif CheckDAOSReturnCode(rc); #if DAOS_API_VERSION_MAJOR == 2 @@ -212,11 +208,9 @@ class FileDaos::Impl if (comm.Rank() == 0) { #if DAOS_API_VERSION_MAJOR == 2 - rc = daos_pool_connect(uuid_c, Group.c_str(), poolFlags, &poh, - NULL, NULL); + rc = daos_pool_connect(uuid_c, Group.c_str(), poolFlags, &poh, NULL, NULL); #else - rc = daos_pool_connect(UUID, Group.c_str(), poolFlags, &poh, - NULL, NULL); + rc = daos_pool_connect(UUID, Group.c_str(), poolFlags, &poh, NULL, NULL); #endif CheckDAOSReturnCode(rc); #if DAOS_API_VERSION_MAJOR == 2 @@ -286,8 +280,7 @@ class FileDaos::Impl { std::cout << "problem!" << std::endl; } - std::memcpy(bufPtr, gHandles[i].iov_buf, - gHandles[i].iov_buf_len); + std::memcpy(bufPtr, gHandles[i].iov_buf, gHandles[i].iov_buf_len); bufPtr += gHandles[i].iov_buf_len; } } @@ -308,8 +301,7 @@ class FileDaos::Impl rc = daos_cont_global2local(poh, gHandles[1], &coh); CheckDAOSReturnCode(rc); - rc = - dfs_global2local(poh, coh, mountFlags, gHandles[2], &Mount); + rc = dfs_global2local(poh, coh, mountFlags, gHandles[2], &Mount); CheckDAOSReturnCode(rc); } @@ -333,10 +325,7 @@ class FileDaos::Impl dfs_obj_t *Obj = nullptr; }; -FileDaos::FileDaos(helper::Comm const &comm) -: Transport("File", "Daos", comm), m_Impl(new Impl) -{ -} +FileDaos::FileDaos(helper::Comm const &comm) : Transport("File", "Daos", comm), m_Impl(new Impl) {} FileDaos::~FileDaos() { @@ -367,16 +356,15 @@ void FileDaos::SetParameters(const Params ¶ms) { if (!uuid_parse(param->second.c_str(), m_Impl->UUID)) { - helper::Throw( - "Toolkit", "transport::file::FileDaos", "SetParameters", - "Unable to parse daos_pool_uuid parameter"); + helper::Throw("Toolkit", "transport::file::FileDaos", + "SetParameters", + "Unable to parse daos_pool_uuid parameter"); } } if (uuid_is_null(m_Impl->UUID)) { - helper::Throw( - "Toolkit", "transport::file::FileDaos", "SetParameters", - "DAOS UUID is empty or not set"); + helper::Throw("Toolkit", "transport::file::FileDaos", + "SetParameters", "DAOS UUID is empty or not set"); } } @@ -389,9 +377,9 @@ void FileDaos::SetParameters(const Params ¶ms) } if (m_Impl->Group.empty()) { - helper::Throw( - "Toolkit", "transport::file::FileDaos", "SetParameters", - "DAOS Group is empty or not set"); + helper::Throw("Toolkit", "transport::file::FileDaos", + "SetParameters", + "DAOS Group is empty or not set"); } } @@ -402,16 +390,16 @@ void FileDaos::SetParameters(const Params ¶ms) { if (!uuid_parse(param->second.c_str(), m_Impl->CUUID)) { - helper::Throw( - "Toolkit", "transport::file::FileDaos", "SetParameters", - "Unable to parse daos_cont_uuid parameter"); + helper::Throw("Toolkit", "transport::file::FileDaos", + "SetParameters", + "Unable to parse daos_cont_uuid parameter"); } } if (uuid_is_null(m_Impl->CUUID)) { - helper::Throw( - "Toolkit", "transport::file::FileDaos", "SetParameters", - "DAOS CUUID is empty or not set"); + helper::Throw("Toolkit", "transport::file::FileDaos", + "SetParameters", + "DAOS CUUID is empty or not set"); } } } @@ -432,8 +420,7 @@ void FileDaos::MkDir(const std::string &path) { std::cout << "m_Impl->Mount is NULL, problem!" << std::endl; } - int rc = - dfs_mkdir(m_Impl->Mount, NULL, path.c_str(), S_IWUSR | S_IRUSR, 0); + int rc = dfs_mkdir(m_Impl->Mount, NULL, path.c_str(), S_IWUSR | S_IRUSR, 0); CheckDAOSReturnCode(rc); } m_Impl->Release(); @@ -453,8 +440,8 @@ void FileDaos::WaitForOpen() } } -void FileDaos::Open(const std::string &name, const Mode openMode, - const bool async, const bool directio) +void FileDaos::Open(const std::string &name, const Mode openMode, const bool async, + const bool directio) { int rc; @@ -474,8 +461,7 @@ void FileDaos::Open(const std::string &name, const Mode openMode, { const std::string dirName(m_Name.substr(0, lastPathSeparator)); fileName = m_Name.substr(lastPathSeparator + 1, m_Name.length() - 1); - rc = dfs_lookup_rel(m_Impl->Mount, NULL, dirName.c_str(), O_RDWR, - &parent, NULL, NULL); + rc = dfs_lookup_rel(m_Impl->Mount, NULL, dirName.c_str(), O_RDWR, &parent, NULL, NULL); CheckDAOSReturnCode(rc); } else @@ -488,10 +474,9 @@ void FileDaos::Open(const std::string &name, const Mode openMode, case Mode::Write: ProfilerStart("open"); - rc = - dfs_open(/*DFS*/ m_Impl->Mount, /*PARENT*/ parent, fileName.c_str(), - S_IFREG | S_IWUSR, O_RDWR | O_CREAT, /*CID*/ 0, - /*chunksize*/ 0, NULL, &m_Impl->Obj); + rc = dfs_open(/*DFS*/ m_Impl->Mount, /*PARENT*/ parent, fileName.c_str(), S_IFREG | S_IWUSR, + O_RDWR | O_CREAT, /*CID*/ 0, + /*chunksize*/ 0, NULL, &m_Impl->Obj); CheckDAOSReturnCode(rc); m_Errno = rc; ProfilerStop("open"); @@ -499,10 +484,9 @@ void FileDaos::Open(const std::string &name, const Mode openMode, case Mode::Append: ProfilerStart("open"); - rc = - dfs_open(/*DFS*/ m_Impl->Mount, /*PARENT*/ parent, fileName.c_str(), - S_IFREG | S_IWUSR | S_IRUSR, O_RDWR | O_CREAT, /*CID*/ 0, - /*chunksize*/ 0, NULL, &m_Impl->Obj); + rc = dfs_open(/*DFS*/ m_Impl->Mount, /*PARENT*/ parent, fileName.c_str(), + S_IFREG | S_IWUSR | S_IRUSR, O_RDWR | O_CREAT, /*CID*/ 0, + /*chunksize*/ 0, NULL, &m_Impl->Obj); CheckDAOSReturnCode(rc); m_Errno = rc; ProfilerStop("open"); @@ -510,8 +494,8 @@ void FileDaos::Open(const std::string &name, const Mode openMode, case Mode::Read: ProfilerStart("open"); - rc = dfs_open(/*DFS*/ m_Impl->Mount, /*PARENT*/ parent, - fileName.c_str(), S_IFREG | S_IRUSR, O_RDONLY, /*CID*/ 0, + rc = dfs_open(/*DFS*/ m_Impl->Mount, /*PARENT*/ parent, fileName.c_str(), S_IFREG | S_IRUSR, + O_RDONLY, /*CID*/ 0, /*chunksize*/ 0, NULL, &m_Impl->Obj); CheckDAOSReturnCode(rc); m_Errno = rc; @@ -519,8 +503,7 @@ void FileDaos::Open(const std::string &name, const Mode openMode, break; default: - CheckFile("unknown open mode for file " + m_Name + - ", in call to Daos open"); + CheckFile("unknown open mode for file " + m_Name + ", in call to Daos open"); } rc = dfs_release(parent); CheckDAOSReturnCode(rc); @@ -563,18 +546,16 @@ void FileDaos::Write(const char *buffer, size_t size, size_t start) auto start = std::chrono::high_resolution_clock::now(); rc = dfs_write(m_Impl->Mount, m_Impl->Obj, &wsgl, m_GlobalOffset, NULL); auto end = std::chrono::high_resolution_clock::now(); - auto duration = - std::chrono::duration_cast(end - start); - std::cout << "rank " << m_Comm.Rank() << ": dfs_write took " - << duration.count() << "s" << std::endl; + auto duration = std::chrono::duration_cast(end - start); + std::cout << "rank " << m_Comm.Rank() << ": dfs_write took " << duration.count() << "s" + << std::endl; CheckDAOSReturnCode(rc); if (rc) { - helper::Throw( - "Toolkit", "transport::file::FileDaos", "Write", - "couldn't write to file " + m_Name + ", in call to Daos Write" + - SysErrMsg()); + helper::Throw("Toolkit", "transport::file::FileDaos", "Write", + "couldn't write to file " + m_Name + + ", in call to Daos Write" + SysErrMsg()); } // std::cout << "rank " << m_Comm.Rank() << ": dfs_write succeeded!" << // std::endl; @@ -674,17 +655,15 @@ void FileDaos::Read(char *buffer, size_t size, size_t start) // std::cout << "rank " << m_Comm.Rank() << ": start dfs_read..." << // std::endl; - rc = dfs_read(m_Impl->Mount, m_Impl->Obj, &rsgl, m_GlobalOffset, - &got_size, NULL); + rc = dfs_read(m_Impl->Mount, m_Impl->Obj, &rsgl, m_GlobalOffset, &got_size, NULL); CheckDAOSReturnCode(rc); if (rc) { - helper::Throw( - "Toolkit", "transport::file::FileDaos", "Read", - "couldn't read from file " + m_Name + ", in call to Daos Read" + - SysErrMsg()); + helper::Throw("Toolkit", "transport::file::FileDaos", "Read", + "couldn't read from file " + m_Name + + ", in call to Daos Read" + SysErrMsg()); } // std::cout << "rank " << m_Comm.Rank() << ": dfs_read succeeded!" << // std::endl; @@ -777,10 +756,9 @@ void FileDaos::Close() if (rc) { - helper::Throw( - "Toolkit", "transport::file::FileDaos", "Close", - "couldn't close file " + m_Name + ", in call to Daos IO close" + - SysErrMsg()); + helper::Throw("Toolkit", "transport::file::FileDaos", "Close", + "couldn't close file " + m_Name + + ", in call to Daos IO close" + SysErrMsg()); } m_IsOpen = false; @@ -801,9 +779,8 @@ void FileDaos::CheckFile(const std::string hint) const { if (!m_DAOSOpenSucceed) { - helper::Throw( - "Toolkit", "transport::file::FileDaos", "CheckFile", - "ERROR: " + hint + SysErrMsg()); + helper::Throw("Toolkit", "transport::file::FileDaos", "CheckFile", + "ERROR: " + hint + SysErrMsg()); } } @@ -831,9 +808,8 @@ void FileDaos::Seek(const size_t start) void FileDaos::Truncate(const size_t length) { - helper::Throw( - "Toolkit", "transport::file::FileDaos", "Truncate", - "Daos Truncate is not implemented yet"); + helper::Throw("Toolkit", "transport::file::FileDaos", "Truncate", + "Daos Truncate is not implemented yet"); } } // end namespace transport diff --git a/source/adios2/toolkit/transport/file/FileDaos.h b/source/adios2/toolkit/transport/file/FileDaos.h index 411fb55def..49a0a40603 100644 --- a/source/adios2/toolkit/transport/file/FileDaos.h +++ b/source/adios2/toolkit/transport/file/FileDaos.h @@ -36,8 +36,8 @@ class FileDaos : public Transport void SetParameters(const Params ¶meters); /** directio option is ignored in this transport */ - void Open(const std::string &name, const Mode openMode, - const bool async = false, const bool directio = false) final; + void Open(const std::string &name, const Mode openMode, const bool async = false, + const bool directio = false) final; void Write(const char *buffer, size_t size, size_t start = MaxSizeT) final; diff --git a/source/adios2/toolkit/transport/file/FileFStream.cpp b/source/adios2/toolkit/transport/file/FileFStream.cpp index aa64cf1115..4202a5a4fc 100644 --- a/source/adios2/toolkit/transport/file/FileFStream.cpp +++ b/source/adios2/toolkit/transport/file/FileFStream.cpp @@ -24,10 +24,7 @@ namespace adios2 namespace transport { -FileFStream::FileFStream(helper::Comm const &comm) -: Transport("File", "fstream", comm) -{ -} +FileFStream::FileFStream(helper::Comm const &comm) : Transport("File", "fstream", comm) {} void FileFStream::WaitForOpen() { @@ -38,20 +35,18 @@ void FileFStream::WaitForOpen() m_OpenFuture.get(); } m_IsOpening = false; - CheckFile( - "couldn't open file " + m_Name + - ", check permissions or path existence, in call to POSIX open"); + CheckFile("couldn't open file " + m_Name + + ", check permissions or path existence, in call to POSIX open"); m_IsOpen = true; } } -void FileFStream::Open(const std::string &name, const Mode openMode, - const bool async, const bool directio) +void FileFStream::Open(const std::string &name, const Mode openMode, const bool async, + const bool directio) { auto lf_AsyncOpenWrite = [&](const std::string &name) -> void { ProfilerStart("open"); - m_FileStream.open(name, std::fstream::out | std::fstream::binary | - std::fstream::trunc); + m_FileStream.open(name, std::fstream::out | std::fstream::binary | std::fstream::trunc); ProfilerStop("open"); }; m_Name = name; @@ -64,22 +59,19 @@ void FileFStream::Open(const std::string &name, const Mode openMode, if (async) { m_IsOpening = true; - m_OpenFuture = - std::async(std::launch::async, lf_AsyncOpenWrite, name); + m_OpenFuture = std::async(std::launch::async, lf_AsyncOpenWrite, name); } else { ProfilerStart("open"); - m_FileStream.open(name, std::fstream::out | std::fstream::binary | - std::fstream::trunc); + m_FileStream.open(name, std::fstream::out | std::fstream::binary | std::fstream::trunc); ProfilerStop("open"); } break; case Mode::Append: ProfilerStart("open"); - m_FileStream.open(name, std::fstream::in | std::fstream::out | - std::fstream::binary); + m_FileStream.open(name, std::fstream::in | std::fstream::out | std::fstream::binary); m_FileStream.seekp(0, std::ios_base::end); ProfilerStop("open"); break; @@ -91,27 +83,23 @@ void FileFStream::Open(const std::string &name, const Mode openMode, break; default: - CheckFile("unknown open mode for file " + m_Name + - ", in call to stream open"); + CheckFile("unknown open mode for file " + m_Name + ", in call to stream open"); } if (!m_IsOpening) { - CheckFile( - "couldn't open file " + m_Name + - ", check permissions or path existence, in call to fstream open"); + CheckFile("couldn't open file " + m_Name + + ", check permissions or path existence, in call to fstream open"); m_IsOpen = true; } } -void FileFStream::OpenChain(const std::string &name, Mode openMode, - const helper::Comm &chainComm, const bool async, - const bool directio) +void FileFStream::OpenChain(const std::string &name, Mode openMode, const helper::Comm &chainComm, + const bool async, const bool directio) { auto lf_AsyncOpenWrite = [&](const std::string &name) -> void { ProfilerStart("open"); - m_FileStream.open(name, std::fstream::out | std::fstream::binary | - std::fstream::trunc); + m_FileStream.open(name, std::fstream::out | std::fstream::binary | std::fstream::trunc); ProfilerStop("open"); }; @@ -121,8 +109,7 @@ void FileFStream::OpenChain(const std::string &name, Mode openMode, if (chainComm.Rank() > 0) { - chainComm.Recv(&token, 1, chainComm.Rank() - 1, 0, - "Chain token in FileFStream::OpenChain"); + chainComm.Recv(&token, 1, chainComm.Rank() - 1, 0, "Chain token in FileFStream::OpenChain"); } m_OpenMode = openMode; @@ -132,22 +119,19 @@ void FileFStream::OpenChain(const std::string &name, Mode openMode, if (async && chainComm.Size() == 1) { m_IsOpening = true; - m_OpenFuture = - std::async(std::launch::async, lf_AsyncOpenWrite, name); + m_OpenFuture = std::async(std::launch::async, lf_AsyncOpenWrite, name); } else { ProfilerStart("open"); if (chainComm.Rank() == 0) { - m_FileStream.open(name, std::fstream::out | - std::fstream::binary | - std::fstream::trunc); + m_FileStream.open(name, + std::fstream::out | std::fstream::binary | std::fstream::trunc); } else { - m_FileStream.open(name, - std::fstream::out | std::fstream::binary); + m_FileStream.open(name, std::fstream::out | std::fstream::binary); } ProfilerStop("open"); } @@ -155,8 +139,7 @@ void FileFStream::OpenChain(const std::string &name, Mode openMode, case Mode::Append: ProfilerStart("open"); - m_FileStream.open(name, std::fstream::in | std::fstream::out | - std::fstream::binary); + m_FileStream.open(name, std::fstream::in | std::fstream::out | std::fstream::binary); m_FileStream.seekp(0, std::ios_base::end); ProfilerStop("open"); break; @@ -168,15 +151,13 @@ void FileFStream::OpenChain(const std::string &name, Mode openMode, break; default: - CheckFile("unknown open mode for file " + m_Name + - ", in call to stream open"); + CheckFile("unknown open mode for file " + m_Name + ", in call to stream open"); } if (!m_IsOpening) { - CheckFile( - "couldn't open file " + m_Name + - ", check permissions or path existence, in call to fstream open"); + CheckFile("couldn't open file " + m_Name + + ", check permissions or path existence, in call to fstream open"); m_IsOpen = true; } @@ -191,13 +172,11 @@ void FileFStream::SetBuffer(char *buffer, size_t size) { if (!buffer && size != 0) { - helper::Throw( - "Toolkit", "transport::file::FileFStream", "SetBuffer", - "buffer size must be 0 when using a NULL buffer"); + helper::Throw("Toolkit", "transport::file::FileFStream", "SetBuffer", + "buffer size must be 0 when using a NULL buffer"); } m_FileStream.rdbuf()->pubsetbuf(buffer, size); - CheckFile("couldn't set buffer in file " + m_Name + - ", in call to fstream rdbuf()->pubsetbuf"); + CheckFile("couldn't set buffer in file " + m_Name + ", in call to fstream rdbuf()->pubsetbuf"); } void FileFStream::Write(const char *buffer, size_t size, size_t start) @@ -206,16 +185,15 @@ void FileFStream::Write(const char *buffer, size_t size, size_t start) ProfilerStart("write"); m_FileStream.write(buffer, static_cast(size)); ProfilerStop("write"); - CheckFile("couldn't write from file " + m_Name + - ", in call to fstream write"); + CheckFile("couldn't write from file " + m_Name + ", in call to fstream write"); }; WaitForOpen(); if (start != MaxSizeT) { m_FileStream.seekp(start); - CheckFile("couldn't move to start position " + std::to_string(start) + - " in file " + m_Name + ", in call to fstream seekp"); + CheckFile("couldn't move to start position " + std::to_string(start) + " in file " + + m_Name + ", in call to fstream seekp"); } if (size > DefaultMaxFileBatchSize) @@ -243,16 +221,15 @@ void FileFStream::Read(char *buffer, size_t size, size_t start) ProfilerStart("read"); m_FileStream.read(buffer, static_cast(size)); ProfilerStop("read"); - CheckFile("couldn't read from file " + m_Name + - ", in call to fstream read"); + CheckFile("couldn't read from file " + m_Name + ", in call to fstream read"); }; WaitForOpen(); if (start != MaxSizeT) { m_FileStream.seekg(start); - CheckFile("couldn't move to start position " + std::to_string(start) + - " in file " + m_Name + ", in call to fstream seekg"); + CheckFile("couldn't move to start position " + std::to_string(start) + " in file " + + m_Name + ", in call to fstream seekg"); } if (size > DefaultMaxFileBatchSize) @@ -282,9 +259,8 @@ size_t FileFStream::GetSize() const std::streampos size = m_FileStream.tellg(); if (static_cast(size) == -1) { - helper::Throw( - "Toolkit", "transport::file::FileFStream", "GetSize", - "couldn't get size of " + m_Name + " file"); + helper::Throw("Toolkit", "transport::file::FileFStream", "GetSize", + "couldn't get size of " + m_Name + " file"); } m_FileStream.seekg(currentPosition); return static_cast(size); @@ -296,8 +272,7 @@ void FileFStream::Flush() ProfilerStart("write"); m_FileStream.flush(); ProfilerStart("write"); - CheckFile("couldn't flush to file " + m_Name + - ", in call to fstream flush"); + CheckFile("couldn't flush to file " + m_Name + ", in call to fstream flush"); } void FileFStream::Close() @@ -325,8 +300,8 @@ void FileFStream::CheckFile(const std::string hint) const { if (!m_FileStream) { - helper::Throw( - "Toolkit", "transport::file::FileFStream", "CheckFile", hint); + helper::Throw("Toolkit", "transport::file::FileFStream", + "CheckFile", hint); } } @@ -334,16 +309,14 @@ void FileFStream::SeekToEnd() { WaitForOpen(); m_FileStream.seekp(0, std::ios_base::end); - CheckFile("couldn't move to the end of file " + m_Name + - ", in call to fstream seekp"); + CheckFile("couldn't move to the end of file " + m_Name + ", in call to fstream seekp"); } void FileFStream::SeekToBegin() { WaitForOpen(); m_FileStream.seekp(0, std::ios_base::beg); - CheckFile("couldn't move to the beginning of file " + m_Name + - ", in call to fstream seekp"); + CheckFile("couldn't move to the beginning of file " + m_Name + ", in call to fstream seekp"); } void FileFStream::Seek(const size_t start) @@ -352,8 +325,8 @@ void FileFStream::Seek(const size_t start) { WaitForOpen(); m_FileStream.seekp(start, std::ios_base::beg); - CheckFile("couldn't move to offset " + std::to_string(start) + - " of file " + m_Name + ", in call to fstream seekp"); + CheckFile("couldn't move to offset " + std::to_string(start) + " of file " + m_Name + + ", in call to fstream seekp"); } else { diff --git a/source/adios2/toolkit/transport/file/FileFStream.h b/source/adios2/toolkit/transport/file/FileFStream.h index 3f2e022474..df5849ac1b 100644 --- a/source/adios2/toolkit/transport/file/FileFStream.h +++ b/source/adios2/toolkit/transport/file/FileFStream.h @@ -33,12 +33,11 @@ class FileFStream : public Transport ~FileFStream() = default; /** directio option is ignored in this transport */ - void Open(const std::string &name, const Mode openMode, - const bool async = false, const bool directio = false) final; + void Open(const std::string &name, const Mode openMode, const bool async = false, + const bool directio = false) final; - void OpenChain(const std::string &name, Mode openMode, - const helper::Comm &chainComm, const bool async = false, - const bool directio = false) final; + void OpenChain(const std::string &name, Mode openMode, const helper::Comm &chainComm, + const bool async = false, const bool directio = false) final; void SetBuffer(char *buffer, size_t size) final; diff --git a/source/adios2/toolkit/transport/file/FileIME.cpp b/source/adios2/toolkit/transport/file/FileIME.cpp index 5d91b67eca..11836d923b 100644 --- a/source/adios2/toolkit/transport/file/FileIME.cpp +++ b/source/adios2/toolkit/transport/file/FileIME.cpp @@ -70,8 +70,8 @@ FileIME::~FileIME() } /** Note that async mode is unsupported in FileIME. */ -void FileIME::Open(const std::string &name, const Mode openMode, - const bool async, const bool directio) +void FileIME::Open(const std::string &name, const Mode openMode, const bool async, + const bool directio) { /** DEFAULT_IME_FILE_PREFIX is "ime://" */ m_Name = DEFAULT_IME_FILE_PREFIX; @@ -91,29 +91,26 @@ void FileIME::Open(const std::string &name, const Mode openMode, { case Mode::Write: ProfilerStart("open"); - m_FileDescriptor = ime_client_native2_open( - m_Name.c_str(), O_WRONLY | O_CREAT | O_TRUNC, 0666); + m_FileDescriptor = + ime_client_native2_open(m_Name.c_str(), O_WRONLY | O_CREAT | O_TRUNC, 0666); ProfilerStop("open"); break; case Mode::Append: ProfilerStart("open"); - m_FileDescriptor = - ime_client_native2_open(m_Name.c_str(), O_RDWR | O_CREAT, 0777); + m_FileDescriptor = ime_client_native2_open(m_Name.c_str(), O_RDWR | O_CREAT, 0777); lseek(m_FileDescriptor, 0, SEEK_END); ProfilerStop("open"); break; case Mode::Read: ProfilerStart("open"); - m_FileDescriptor = - ime_client_native2_open(m_Name.c_str(), O_RDONLY, 0000); + m_FileDescriptor = ime_client_native2_open(m_Name.c_str(), O_RDONLY, 0000); ProfilerStop("open"); break; default: - CheckFile("unknown open mode for file " + m_Name + - ", in call to IME open"); + CheckFile("unknown open mode for file " + m_Name + ", in call to IME open"); } CheckFile("couldn't open file " + m_Name + @@ -127,8 +124,7 @@ void FileIME::SetParameters(const Params ¶ms) auto param = params.find("synctopfs"); if (param != params.end()) { - m_SyncToPFS = helper::StringTo(param->second, - " in Parameter key=SyncToPFS"); + m_SyncToPFS = helper::StringTo(param->second, " in Parameter key=SyncToPFS"); } } @@ -138,8 +134,7 @@ void FileIME::Write(const char *buffer, size_t size, size_t start) while (size > 0) { ProfilerStart("write"); - const auto writtenSize = - ime_client_native2_write(m_FileDescriptor, buffer, size); + const auto writtenSize = ime_client_native2_write(m_FileDescriptor, buffer, size); ProfilerStop("write"); if (writtenSize == -1) @@ -149,9 +144,8 @@ void FileIME::Write(const char *buffer, size_t size, size_t start) continue; } - helper::Throw( - "Toolkit", "transport::file::FileIME", "Write", - "couldn't write to file " + m_Name); + helper::Throw("Toolkit", "transport::file::FileIME", + "Write", "couldn't write to file " + m_Name); } buffer += writtenSize; @@ -161,15 +155,13 @@ void FileIME::Write(const char *buffer, size_t size, size_t start) if (start != MaxSizeT) { - const auto newPosition = - ime_client_native2_lseek(m_FileDescriptor, start, SEEK_SET); + const auto newPosition = ime_client_native2_lseek(m_FileDescriptor, start, SEEK_SET); if (static_cast(newPosition) != start) { - helper::Throw( - "Toolkit", "transport::file::FileIME", "Write", - "couldn't move to start position " + std::to_string(start) + - " in file " + m_Name); + helper::Throw("Toolkit", "transport::file::FileIME", "Write", + "couldn't move to start position " + + std::to_string(start) + " in file " + m_Name); } } @@ -198,8 +190,7 @@ void FileIME::Read(char *buffer, size_t size, size_t start) while (size > 0) { ProfilerStart("read"); - const auto readSize = - ime_client_native2_read(m_FileDescriptor, buffer, size); + const auto readSize = ime_client_native2_read(m_FileDescriptor, buffer, size); ProfilerStop("read"); if (readSize == -1) @@ -209,9 +200,8 @@ void FileIME::Read(char *buffer, size_t size, size_t start) continue; } - helper::Throw( - "Toolkit", "transport::file::FileIME", "Read", - "ERROR: couldn't read from file " + m_Name); + helper::Throw("Toolkit", "transport::file::FileIME", "Read", + "ERROR: couldn't read from file " + m_Name); } buffer += readSize; @@ -221,15 +211,14 @@ void FileIME::Read(char *buffer, size_t size, size_t start) if (start != MaxSizeT) { - const auto newPosition = - ime_client_native2_lseek(m_FileDescriptor, start, SEEK_SET); + const auto newPosition = ime_client_native2_lseek(m_FileDescriptor, start, SEEK_SET); if (static_cast(newPosition) != start) { - helper::Throw( - "Toolkit", "transport::file::FileIME", "Read", - "couldn't move to start position " + std::to_string(start) + - " in file " + m_Name + ", errno " + std::to_string(errno)); + helper::Throw("Toolkit", "transport::file::FileIME", "Read", + "couldn't move to start position " + + std::to_string(start) + " in file " + m_Name + + ", errno " + std::to_string(errno)); } } @@ -257,9 +246,8 @@ size_t FileIME::GetSize() struct stat fileStat; if (fstat(m_FileDescriptor, &fileStat) == -1) { - helper::Throw( - "Toolkit", "transport::file::FileIME", "GetSize", - "couldn't get size of file " + m_Name); + helper::Throw("Toolkit", "transport::file::FileIME", "GetSize", + "couldn't get size of file " + m_Name); } return static_cast(fileStat.st_size); } @@ -286,9 +274,8 @@ void FileIME::Close() if (status == -1) { - helper::Throw( - "Toolkit", "transport::file::FileIME", "Close", - "ERROR: couldn't close file " + m_Name); + helper::Throw("Toolkit", "transport::file::FileIME", "Close", + "ERROR: couldn't close file " + m_Name); } m_IsOpen = false; @@ -307,8 +294,8 @@ void FileIME::CheckFile(const std::string hint) const { if (m_FileDescriptor == -1) { - helper::Throw( - "Toolkit", "transport::file::FileIME", "CheckFile", hint); + helper::Throw("Toolkit", "transport::file::FileIME", "CheckFile", + hint); } } @@ -317,9 +304,8 @@ void FileIME::SeekToEnd() const int status = ime_client_native2_lseek(m_FileDescriptor, 0, SEEK_END); if (status == -1) { - helper::Throw( - "Toolkit", "transport::file::FileIME", "SeekToEnd", - "couldn't seek to the end of file " + m_Name); + helper::Throw("Toolkit", "transport::file::FileIME", "SeekToEnd", + "couldn't seek to the end of file " + m_Name); } } @@ -328,9 +314,8 @@ void FileIME::SeekToBegin() const int status = ime_client_native2_lseek(m_FileDescriptor, 0, SEEK_SET); if (status == -1) { - helper::Throw( - "Toolkit", "transport::file::FileIME", "SeekToBegin", - "couldn't seek to the begin of file " + m_Name); + helper::Throw("Toolkit", "transport::file::FileIME", "SeekToBegin", + "couldn't seek to the begin of file " + m_Name); } } @@ -338,14 +323,12 @@ void FileIME::Seek(const size_t start) { if (start != MaxSizeT) { - const int status = - ime_client_native2_lseek(m_FileDescriptor, start, SEEK_SET); + const int status = ime_client_native2_lseek(m_FileDescriptor, start, SEEK_SET); if (status == -1) { - helper::Throw( - "Toolkit", "transport::file::FileIME", "Seek", - "couldn't seek to offset " + std::to_string(start) + - " of file " + m_Name); + helper::Throw("Toolkit", "transport::file::FileIME", "Seek", + "couldn't seek to offset " + + std::to_string(start) + " of file " + m_Name); } } else @@ -356,9 +339,8 @@ void FileIME::Seek(const size_t start) void FileIME::Truncate(const size_t length) { - helper::Throw( - "Toolkit", "transport::file::FileIME", "Truncate", - "IME Truncate is not implemented yet"); + helper::Throw("Toolkit", "transport::file::FileIME", "Truncate", + "IME Truncate is not implemented yet"); } void FileIME::MkDir(const std::string &fileName) {} diff --git a/source/adios2/toolkit/transport/file/FileIME.h b/source/adios2/toolkit/transport/file/FileIME.h index 92532714c7..6f9ace7fe9 100644 --- a/source/adios2/toolkit/transport/file/FileIME.h +++ b/source/adios2/toolkit/transport/file/FileIME.h @@ -35,8 +35,8 @@ class FileIME : public Transport ~FileIME(); /** Async option is ignored in FileIME transport */ - void Open(const std::string &name, const Mode openMode, - const bool async = false, const bool directio = false) final; + void Open(const std::string &name, const Mode openMode, const bool async = false, + const bool directio = false) final; void SetParameters(const Params ¶meters) final; diff --git a/source/adios2/toolkit/transport/file/FilePOSIX.cpp b/source/adios2/toolkit/transport/file/FilePOSIX.cpp index 3e86eb6d82..20f98cb179 100644 --- a/source/adios2/toolkit/transport/file/FilePOSIX.cpp +++ b/source/adios2/toolkit/transport/file/FilePOSIX.cpp @@ -33,10 +33,7 @@ namespace adios2 namespace transport { -FilePOSIX::FilePOSIX(helper::Comm const &comm) -: Transport("File", "POSIX", comm) -{ -} +FilePOSIX::FilePOSIX(helper::Comm const &comm) : Transport("File", "POSIX", comm) {} FilePOSIX::~FilePOSIX() { @@ -74,11 +71,10 @@ static int __GetOpenFlag(const int flag, const bool directio) } } -void FilePOSIX::Open(const std::string &name, const Mode openMode, - const bool async, const bool directio) +void FilePOSIX::Open(const std::string &name, const Mode openMode, const bool async, + const bool directio) { - auto lf_AsyncOpenWrite = [&](const std::string &name, - const bool directio) -> int { + auto lf_AsyncOpenWrite = [&](const std::string &name, const bool directio) -> int { ProfilerStart("open"); errno = 0; int flag = __GetOpenFlag(O_WRONLY | O_CREAT | O_TRUNC, directio); @@ -99,16 +95,14 @@ void FilePOSIX::Open(const std::string &name, const Mode openMode, if (async) { m_IsOpening = true; - m_OpenFuture = std::async(std::launch::async, lf_AsyncOpenWrite, - name, directio); + m_OpenFuture = std::async(std::launch::async, lf_AsyncOpenWrite, name, directio); } else { ProfilerStart("open"); errno = 0; - m_FileDescriptor = open( - m_Name.c_str(), - __GetOpenFlag(O_WRONLY | O_CREAT | O_TRUNC, directio), 0666); + m_FileDescriptor = + open(m_Name.c_str(), __GetOpenFlag(O_WRONLY | O_CREAT | O_TRUNC, directio), 0666); m_Errno = errno; ProfilerStop("open"); } @@ -117,8 +111,7 @@ void FilePOSIX::Open(const std::string &name, const Mode openMode, case Mode::Append: ProfilerStart("open"); errno = 0; - m_FileDescriptor = open( - m_Name.c_str(), __GetOpenFlag(O_RDWR | O_CREAT, directio), 0777); + m_FileDescriptor = open(m_Name.c_str(), __GetOpenFlag(O_RDWR | O_CREAT, directio), 0777); lseek(m_FileDescriptor, 0, SEEK_END); m_Errno = errno; ProfilerStop("open"); @@ -133,8 +126,7 @@ void FilePOSIX::Open(const std::string &name, const Mode openMode, break; default: - CheckFile("unknown open mode for file " + m_Name + - ", in call to POSIX open"); + CheckFile("unknown open mode for file " + m_Name + ", in call to POSIX open"); } if (!m_IsOpening) @@ -144,12 +136,10 @@ void FilePOSIX::Open(const std::string &name, const Mode openMode, } } -void FilePOSIX::OpenChain(const std::string &name, Mode openMode, - const helper::Comm &chainComm, const bool async, - const bool directio) +void FilePOSIX::OpenChain(const std::string &name, Mode openMode, const helper::Comm &chainComm, + const bool async, const bool directio) { - auto lf_AsyncOpenWrite = [&](const std::string &name, - const bool directio) -> int { + auto lf_AsyncOpenWrite = [&](const std::string &name, const bool directio) -> int { ProfilerStart("open"); errno = 0; int flag = __GetOpenFlag(O_WRONLY | O_CREAT | O_TRUNC, directio); @@ -165,8 +155,7 @@ void FilePOSIX::OpenChain(const std::string &name, Mode openMode, if (chainComm.Rank() > 0) { - chainComm.Recv(&token, 1, chainComm.Rank() - 1, 0, - "Chain token in FilePOSIX::OpenChain"); + chainComm.Recv(&token, 1, chainComm.Rank() - 1, 0, "Chain token in FilePOSIX::OpenChain"); } m_DirectIO = directio; @@ -180,8 +169,7 @@ void FilePOSIX::OpenChain(const std::string &name, Mode openMode, // only when process is a single writer, can create the file // asynchronously, otherwise other processes are waiting on it m_IsOpening = true; - m_OpenFuture = std::async(std::launch::async, lf_AsyncOpenWrite, - name, directio); + m_OpenFuture = std::async(std::launch::async, lf_AsyncOpenWrite, name, directio); } else { @@ -189,15 +177,12 @@ void FilePOSIX::OpenChain(const std::string &name, Mode openMode, errno = 0; if (chainComm.Rank() == 0) { - m_FileDescriptor = - open(m_Name.c_str(), - __GetOpenFlag(O_WRONLY | O_CREAT | O_TRUNC, directio), - 0666); + m_FileDescriptor = open( + m_Name.c_str(), __GetOpenFlag(O_WRONLY | O_CREAT | O_TRUNC, directio), 0666); } else { - m_FileDescriptor = open( - m_Name.c_str(), __GetOpenFlag(O_WRONLY, directio), 0666); + m_FileDescriptor = open(m_Name.c_str(), __GetOpenFlag(O_WRONLY, directio), 0666); lseek(m_FileDescriptor, 0, SEEK_SET); } m_Errno = errno; @@ -211,13 +196,11 @@ void FilePOSIX::OpenChain(const std::string &name, Mode openMode, if (chainComm.Rank() == 0) { m_FileDescriptor = - open(m_Name.c_str(), __GetOpenFlag(O_RDWR | O_CREAT, directio), - 0666); + open(m_Name.c_str(), __GetOpenFlag(O_RDWR | O_CREAT, directio), 0666); } else { - m_FileDescriptor = - open(m_Name.c_str(), __GetOpenFlag(O_RDWR, directio)); + m_FileDescriptor = open(m_Name.c_str(), __GetOpenFlag(O_RDWR, directio)); } lseek(m_FileDescriptor, 0, SEEK_END); m_Errno = errno; @@ -233,8 +216,7 @@ void FilePOSIX::OpenChain(const std::string &name, Mode openMode, break; default: - CheckFile("unknown open mode for file " + m_Name + - ", in call to POSIX open"); + CheckFile("unknown open mode for file " + m_Name + ", in call to POSIX open"); } if (!m_IsOpening) @@ -288,10 +270,10 @@ void FilePOSIX::Write(const char *buffer, size_t size, size_t start) if (static_cast(newPosition) != start) { - helper::Throw( - "Toolkit", "transport::file::FilePOSIX", "Write", - "couldn't move to start position " + std::to_string(start) + - " in file " + m_Name + " " + SysErrMsg()); + helper::Throw("Toolkit", "transport::file::FilePOSIX", "Write", + "couldn't move to start position " + + std::to_string(start) + " in file " + m_Name + + " " + SysErrMsg()); } } else @@ -375,12 +357,10 @@ void FilePOSIX::WriteV(const core::iovec *iov, const int iovcnt, size_t start) } // write the rest one by one - Write(static_cast(iov[c].iov_base) + pos, - iov[c].iov_len - pos); + Write(static_cast(iov[c].iov_base) + pos, iov[c].iov_len - pos); for (; c < iovcnt; ++c) { - Write(static_cast(iov[c].iov_base), - iov[c].iov_len); + Write(static_cast(iov[c].iov_base), iov[c].iov_len); } } }; @@ -394,10 +374,10 @@ void FilePOSIX::WriteV(const core::iovec *iov, const int iovcnt, size_t start) if (static_cast(newPosition) != start) { - helper::Throw( - "Toolkit", "transport::file::FilePOSIX", "WriteV", - "couldn't move to start position " + std::to_string(start) + - " in file " + m_Name + " " + SysErrMsg()); + helper::Throw("Toolkit", "transport::file::FilePOSIX", "WriteV", + "couldn't move to start position " + + std::to_string(start) + " in file " + m_Name + + " " + SysErrMsg()); } } @@ -453,10 +433,10 @@ void FilePOSIX::Read(char *buffer, size_t size, size_t start) if (static_cast(newPosition) != start) { - helper::Throw( - "Toolkit", "transport::file::FilePOSIX", "Read", - "couldn't move to start position " + std::to_string(start) + - " in file " + m_Name + " " + SysErrMsg()); + helper::Throw("Toolkit", "transport::file::FilePOSIX", "Read", + "couldn't move to start position " + + std::to_string(start) + " in file " + m_Name + + " " + SysErrMsg()); } } @@ -487,9 +467,8 @@ size_t FilePOSIX::GetSize() if (fstat(m_FileDescriptor, &fileStat) == -1) { m_Errno = errno; - helper::Throw( - "Toolkit", "transport::file::FilePOSIX", "GetSize", - "couldn't get size of file " + m_Name + SysErrMsg()); + helper::Throw("Toolkit", "transport::file::FilePOSIX", "GetSize", + "couldn't get size of file " + m_Name + SysErrMsg()); } m_Errno = errno; return static_cast(fileStat.st_size); @@ -519,9 +498,8 @@ void FilePOSIX::Close() if (status == -1) { - helper::Throw( - "Toolkit", "transport::file::FilePOSIX", "Close", - "couldn't close file " + m_Name + " " + SysErrMsg()); + helper::Throw("Toolkit", "transport::file::FilePOSIX", "Close", + "couldn't close file " + m_Name + " " + SysErrMsg()); } m_IsOpen = false; @@ -541,16 +519,14 @@ void FilePOSIX::CheckFile(const std::string hint) const { if (m_FileDescriptor == -1) { - helper::Throw("Toolkit", - "transport::file::FilePOSIX", - "CheckFile", hint + SysErrMsg()); + helper::Throw("Toolkit", "transport::file::FilePOSIX", "CheckFile", + hint + SysErrMsg()); } } std::string FilePOSIX::SysErrMsg() const { - return std::string(": errno = " + std::to_string(m_Errno) + ": " + - strerror(m_Errno)); + return std::string(": errno = " + std::to_string(m_Errno) + ": " + strerror(m_Errno)); } void FilePOSIX::SeekToEnd() @@ -561,9 +537,9 @@ void FilePOSIX::SeekToEnd() m_Errno = 0; if (status == -1) { - helper::Throw( - "Toolkit", "transport::file::FilePOSIX", "SeekToEnd", - "couldn't seek to the end of file " + m_Name + " " + SysErrMsg()); + helper::Throw("Toolkit", "transport::file::FilePOSIX", "SeekToEnd", + "couldn't seek to the end of file " + m_Name + " " + + SysErrMsg()); } } @@ -591,10 +567,10 @@ void FilePOSIX::Seek(const size_t start) m_Errno = errno; if (status == -1) { - helper::Throw( - "Toolkit", "transport::file::FilePOSIX", "Seek", - "couldn't seek to offset " + std::to_string(start) + - " of file " + m_Name + " " + SysErrMsg()); + helper::Throw("Toolkit", "transport::file::FilePOSIX", "Seek", + "couldn't seek to offset " + + std::to_string(start) + " of file " + m_Name + + " " + SysErrMsg()); } } else @@ -611,10 +587,9 @@ void FilePOSIX::Truncate(const size_t length) m_Errno = errno; if (status == -1) { - helper::Throw( - "Toolkit", "transport::file::FilePOSIX", "Truncate", - "couldn't truncate to " + std::to_string(length) + - " bytes of file " + m_Name + " " + SysErrMsg()); + helper::Throw("Toolkit", "transport::file::FilePOSIX", "Truncate", + "couldn't truncate to " + std::to_string(length) + + " bytes of file " + m_Name + " " + SysErrMsg()); } } diff --git a/source/adios2/toolkit/transport/file/FilePOSIX.h b/source/adios2/toolkit/transport/file/FilePOSIX.h index 4f352b833c..394aa9ea15 100644 --- a/source/adios2/toolkit/transport/file/FilePOSIX.h +++ b/source/adios2/toolkit/transport/file/FilePOSIX.h @@ -34,19 +34,17 @@ class FilePOSIX : public Transport ~FilePOSIX(); - void Open(const std::string &name, const Mode openMode, - const bool async = false, const bool directio = false) final; + void Open(const std::string &name, const Mode openMode, const bool async = false, + const bool directio = false) final; - void OpenChain(const std::string &name, Mode openMode, - const helper::Comm &chainComm, const bool async = false, - const bool directio = false) final; + void OpenChain(const std::string &name, Mode openMode, const helper::Comm &chainComm, + const bool async = false, const bool directio = false) final; void Write(const char *buffer, size_t size, size_t start = MaxSizeT) final; #ifdef REALLY_WANT_WRITEV /* Actual writev() function, inactive for now */ - void WriteV(const core::iovec *iov, const int iovcnt, - size_t start = MaxSizeT) final; + void WriteV(const core::iovec *iov, const int iovcnt, size_t start = MaxSizeT) final; #endif void Read(char *buffer, size_t size, size_t start = MaxSizeT) final; diff --git a/source/adios2/toolkit/transport/file/FileStdio.cpp b/source/adios2/toolkit/transport/file/FileStdio.cpp index 24fab067fa..05344a7a1a 100644 --- a/source/adios2/toolkit/transport/file/FileStdio.cpp +++ b/source/adios2/toolkit/transport/file/FileStdio.cpp @@ -27,10 +27,7 @@ namespace adios2 namespace transport { -FileStdio::FileStdio(helper::Comm const &comm) -: Transport("File", "stdio", comm) -{ -} +FileStdio::FileStdio(helper::Comm const &comm) : Transport("File", "stdio", comm) {} FileStdio::~FileStdio() { @@ -49,9 +46,8 @@ void FileStdio::WaitForOpen() m_File = m_OpenFuture.get(); } m_IsOpening = false; - CheckFile( - "couldn't open file " + m_Name + - ", check permissions or path existence, in call to POSIX open"); + CheckFile("couldn't open file " + m_Name + + ", check permissions or path existence, in call to POSIX open"); m_IsOpen = true; if (m_DelayedBufferSet) { @@ -60,8 +56,8 @@ void FileStdio::WaitForOpen() } } -void FileStdio::Open(const std::string &name, const Mode openMode, - const bool async, const bool directio) +void FileStdio::Open(const std::string &name, const Mode openMode, const bool async, + const bool directio) { auto lf_AsyncOpenWrite = [&](const std::string &name) -> FILE * { errno = 0; @@ -77,8 +73,7 @@ void FileStdio::Open(const std::string &name, const Mode openMode, if (async) { m_IsOpening = true; - m_OpenFuture = - std::async(std::launch::async, lf_AsyncOpenWrite, name); + m_OpenFuture = std::async(std::launch::async, lf_AsyncOpenWrite, name); } else { @@ -96,23 +91,20 @@ void FileStdio::Open(const std::string &name, const Mode openMode, m_File = std::fopen(name.c_str(), "rb"); break; default: - helper::Throw( - "Toolkit", "transport::file::FileStdio", "Open", - "unknown open mode for file " + m_Name); + helper::Throw("Toolkit", "transport::file::FileStdio", "Open", + "unknown open mode for file " + m_Name); } if (!m_IsOpening) { - CheckFile( - "couldn't open file " + m_Name + - ", check permissions or path existence, in call to stdio open"); + CheckFile("couldn't open file " + m_Name + + ", check permissions or path existence, in call to stdio open"); m_IsOpen = true; } } -void FileStdio::OpenChain(const std::string &name, Mode openMode, - const helper::Comm &chainComm, const bool async, - const bool directio) +void FileStdio::OpenChain(const std::string &name, Mode openMode, const helper::Comm &chainComm, + const bool async, const bool directio) { auto lf_AsyncOpenWrite = [&](const std::string &name) -> FILE * { errno = 0; @@ -125,8 +117,7 @@ void FileStdio::OpenChain(const std::string &name, Mode openMode, if (chainComm.Rank() > 0) { - chainComm.Recv(&token, 1, chainComm.Rank() - 1, 0, - "Chain token in FileStdio::OpenChain"); + chainComm.Recv(&token, 1, chainComm.Rank() - 1, 0, "Chain token in FileStdio::OpenChain"); } m_OpenMode = openMode; @@ -136,8 +127,7 @@ void FileStdio::OpenChain(const std::string &name, Mode openMode, if (async) { m_IsOpening = true; - m_OpenFuture = - std::async(std::launch::async, lf_AsyncOpenWrite, name); + m_OpenFuture = std::async(std::launch::async, lf_AsyncOpenWrite, name); } else { @@ -155,16 +145,14 @@ void FileStdio::OpenChain(const std::string &name, Mode openMode, m_File = std::fopen(name.c_str(), "rb"); break; default: - helper::Throw( - "Toolkit", "transport::file::FileStdio", "Open", - "unknown open mode for file " + m_Name); + helper::Throw("Toolkit", "transport::file::FileStdio", "Open", + "unknown open mode for file " + m_Name); } if (!m_IsOpening) { - CheckFile( - "couldn't open file " + m_Name + - ", check permissions or path existence, in call to stdio open"); + CheckFile("couldn't open file " + m_Name + + ", check permissions or path existence, in call to stdio open"); m_IsOpen = true; } @@ -197,19 +185,18 @@ void FileStdio::SetBuffer(char *buffer, size_t size) { if (size != 0) { - helper::Throw( - "Toolkit", "transport::file::FileStdio", "SetBuffer", - "buffer size must be 0 when using a NULL buffer"); + helper::Throw("Toolkit", "transport::file::FileStdio", + "SetBuffer", + "buffer size must be 0 when using a NULL buffer"); } status = std::setvbuf(m_File, NULL, _IONBF, 0); } if (status) { - helper::Throw( - "Toolkit", "transport::file::FileStdio", "SetBuffer", - "could not set FILE* buffer in file " + m_Name + - ", in call to stdio setvbuf"); + helper::Throw("Toolkit", "transport::file::FileStdio", "SetBuffer", + "could not set FILE* buffer in file " + m_Name + + ", in call to stdio setvbuf"); } } @@ -217,38 +204,34 @@ void FileStdio::Write(const char *buffer, size_t size, size_t start) { auto lf_Write = [&](const char *buffer, size_t size) { ProfilerStart("write"); - const auto writtenSize = - std::fwrite(buffer, sizeof(char), size, m_File); + const auto writtenSize = std::fwrite(buffer, sizeof(char), size, m_File); ProfilerStop("write"); - CheckFile("couldn't write to file " + m_Name + - ", in call to stdio fwrite"); + CheckFile("couldn't write to file " + m_Name + ", in call to stdio fwrite"); if (writtenSize != size) { - helper::Throw( - "Toolkit", "transport::file::FileStdio", "Write", - "written size + " + std::to_string(writtenSize) + - " is not equal to intended size " + std::to_string(size) + - " in file " + m_Name + ", in call to stdio fwrite"); + helper::Throw("Toolkit", "transport::file::FileStdio", "Write", + "written size + " + std::to_string(writtenSize) + + " is not equal to intended size " + + std::to_string(size) + " in file " + m_Name + + ", in call to stdio fwrite"); } }; WaitForOpen(); if (start != MaxSizeT) { - const auto status = - std::fseek(m_File, static_cast(start), SEEK_SET); + const auto status = std::fseek(m_File, static_cast(start), SEEK_SET); if (status != 0) { - helper::Throw( - "Toolkit", "transport::file::FileStdio", "Write", - "couldn't move position of " + m_Name + - " file, in call to FileStdio Write fseek"); + helper::Throw("Toolkit", "transport::file::FileStdio", "Write", + "couldn't move position of " + m_Name + + " file, in call to FileStdio Write fseek"); } - CheckFile("couldn't move to start position " + std::to_string(start) + - " in file " + m_Name + ", in call to stdio fseek at write "); + CheckFile("couldn't move to start position " + std::to_string(start) + " in file " + + m_Name + ", in call to stdio fseek at write "); } if (size > DefaultMaxFileBatchSize) @@ -277,28 +260,23 @@ void FileStdio::Read(char *buffer, size_t size, size_t start) const auto readSize = std::fread(buffer, sizeof(char), size, m_File); ProfilerStop("read"); - CheckFile("couldn't read to file " + m_Name + - ", in call to stdio fread"); + CheckFile("couldn't read to file " + m_Name + ", in call to stdio fread"); if (readSize != size) { helper::Throw( "Toolkit", "transport::file::FileStdio", "Read", - "read size of " + std::to_string(readSize) + - " is not equal to intended size " + std::to_string(size) + - " in file " + m_Name + ", in call to stdio fread"); + "read size of " + std::to_string(readSize) + " is not equal to intended size " + + std::to_string(size) + " in file " + m_Name + ", in call to stdio fread"); } }; WaitForOpen(); if (start != MaxSizeT) { - const auto status = - std::fseek(m_File, static_cast(start), SEEK_SET); - CheckFile("couldn't move to start position " + std::to_string(start) + - " in file " + m_Name + - ", in call to stdio fseek for read, result=" + - std::to_string(status)); + const auto status = std::fseek(m_File, static_cast(start), SEEK_SET); + CheckFile("couldn't move to start position " + std::to_string(start) + " in file " + + m_Name + ", in call to stdio fseek for read, result=" + std::to_string(status)); } if (size > DefaultMaxFileBatchSize) @@ -326,20 +304,18 @@ size_t FileStdio::GetSize() const auto currentPosition = ftell(m_File); if (currentPosition == -1L) { - helper::Throw( - "Toolkit", "transport::file::FileStdio", "GetSize", - "couldn't get current position of " + m_Name + - " file, in call to FileStdio GetSize ftell"); + helper::Throw("Toolkit", "transport::file::FileStdio", "GetSize", + "couldn't get current position of " + m_Name + + " file, in call to FileStdio GetSize ftell"); } fseek(m_File, 0, SEEK_END); const auto size = ftell(m_File); if (size == -1) { - helper::Throw( - "Toolkit", "transport::file::FileStdio", "GetSize", - "couldn't get size of " + m_Name + - " file, in call to FileStdio GetSize ftell"); + helper::Throw("Toolkit", "transport::file::FileStdio", "GetSize", + "couldn't get size of " + m_Name + + " file, in call to FileStdio GetSize ftell"); } fseek(m_File, currentPosition, SEEK_SET); return static_cast(size); @@ -354,9 +330,9 @@ void FileStdio::Flush() if (status == EOF) { - helper::Throw( - "Toolkit", "transport::file::FileStdio", "Flush", - "couldn't flush file " + m_Name + ", in call to stdio fflush"); + helper::Throw("Toolkit", "transport::file::FileStdio", "Flush", + "couldn't flush file " + m_Name + + ", in call to stdio fflush"); } } @@ -369,9 +345,9 @@ void FileStdio::Close() if (status == EOF) { - helper::Throw( - "Toolkit", "transport::file::FileStdio", "Close", - "couldn't close file " + m_Name + ", in call to stdio fclose"); + helper::Throw("Toolkit", "transport::file::FileStdio", "Close", + "couldn't close file " + m_Name + + ", in call to stdio fclose"); } m_IsOpen = false; @@ -396,15 +372,13 @@ void FileStdio::CheckFile(const std::string hint) const { errmsg = std::strerror(errno); } - helper::Throw( - "Toolkit", "transport::file::FileStdio", "CheckFile", - "ERROR: " + hint + ":" + errmsg); + helper::Throw("Toolkit", "transport::file::FileStdio", "CheckFile", + "ERROR: " + hint + ":" + errmsg); } else if (std::ferror(m_File)) { - helper::Throw("Toolkit", - "transport::file::FileStdio", - "CheckFile", "ERROR: " + hint); + helper::Throw("Toolkit", "transport::file::FileStdio", "CheckFile", + "ERROR: " + hint); } } @@ -414,9 +388,8 @@ void FileStdio::SeekToEnd() const auto status = std::fseek(m_File, 0, SEEK_END); if (status == -1) { - helper::Throw( - "Toolkit", "transport::file::FileStdio", "SeekToEnd", - "couldn't seek to the end of file " + m_Name); + helper::Throw("Toolkit", "transport::file::FileStdio", "SeekToEnd", + "couldn't seek to the end of file " + m_Name); } } @@ -426,9 +399,9 @@ void FileStdio::SeekToBegin() const auto status = std::fseek(m_File, 0, SEEK_SET); if (status == -1) { - helper::Throw( - "Toolkit", "transport::file::FileStdio", "SeekToBegin", - "couldn't seek to the begin of file " + m_Name); + helper::Throw("Toolkit", "transport::file::FileStdio", + "SeekToBegin", + "couldn't seek to the begin of file " + m_Name); } } @@ -440,10 +413,9 @@ void FileStdio::Seek(const size_t start) const auto status = std::fseek(m_File, 0, SEEK_SET); if (status == -1) { - helper::Throw( - "Toolkit", "transport::file::FileStdio", "Seek", - "couldn't seek to offset " + std::to_string(start) + - " of file " + m_Name); + helper::Throw("Toolkit", "transport::file::FileStdio", "Seek", + "couldn't seek to offset " + + std::to_string(start) + " of file " + m_Name); } } else @@ -455,9 +427,8 @@ void FileStdio::Seek(const size_t start) #ifdef _WIN32 void FileStdio::Truncate(const size_t length) { - helper::Throw( - "Toolkit", "transport::file::FileStdio", "Truncate", - "This is not supported on Windows"); + helper::Throw("Toolkit", "transport::file::FileStdio", "Truncate", + "This is not supported on Windows"); } #else #include // ftruncate @@ -469,10 +440,9 @@ void FileStdio::Truncate(const size_t length) const auto status = ftruncate(fd, length); if (status == -1) { - helper::Throw( - "Toolkit", "transport::file::FileStdio", "Truncate", - "couldn't truncate to " + std::to_string(length) + " of file " + - m_Name); + helper::Throw("Toolkit", "transport::file::FileStdio", "Truncate", + "couldn't truncate to " + std::to_string(length) + + " of file " + m_Name); } } #endif diff --git a/source/adios2/toolkit/transport/file/FileStdio.h b/source/adios2/toolkit/transport/file/FileStdio.h index 7882004626..1ff4a65fd7 100644 --- a/source/adios2/toolkit/transport/file/FileStdio.h +++ b/source/adios2/toolkit/transport/file/FileStdio.h @@ -35,12 +35,11 @@ class FileStdio : public Transport ~FileStdio(); /** directio option is ignored in this transport */ - void Open(const std::string &name, const Mode openMode, - const bool async = false, const bool directio = false) final; + void Open(const std::string &name, const Mode openMode, const bool async = false, + const bool directio = false) final; - void OpenChain(const std::string &name, Mode openMode, - const helper::Comm &chainComm, const bool async = false, - const bool directio = false) final; + void OpenChain(const std::string &name, Mode openMode, const helper::Comm &chainComm, + const bool async = false, const bool directio = false) final; void SetBuffer(char *buffer, size_t size) final; diff --git a/source/adios2/toolkit/transport/null/NullTransport.cpp b/source/adios2/toolkit/transport/null/NullTransport.cpp index ee2d9582f5..6d62cafe71 100644 --- a/source/adios2/toolkit/transport/null/NullTransport.cpp +++ b/source/adios2/toolkit/transport/null/NullTransport.cpp @@ -32,13 +32,13 @@ NullTransport::NullTransport(helper::Comm const &comm) NullTransport::~NullTransport() = default; -void NullTransport::Open(const std::string &name, const Mode openMode, - const bool async, const bool directio) +void NullTransport::Open(const std::string &name, const Mode openMode, const bool async, + const bool directio) { if (Impl->IsOpen) { - helper::Throw("Toolkit", "transport::NullTransport", - "Open", "transport is already open"); + helper::Throw("Toolkit", "transport::NullTransport", "Open", + "transport is already open"); } ProfilerStart("open"); @@ -54,8 +54,8 @@ void NullTransport::Write(const char *buffer, size_t size, size_t start) { if (!Impl->IsOpen) { - helper::Throw("Toolkit", "transport::NullTransport", - "Write", "transport is not open yet"); + helper::Throw("Toolkit", "transport::NullTransport", "Write", + "transport is not open yet"); } ProfilerStart("write"); @@ -71,15 +71,15 @@ void NullTransport::Read(char *buffer, size_t size, size_t start) { if (!Impl->IsOpen) { - helper::Throw("Toolkit", "transport::NullTransport", - "Read", "transport is not open yet"); + helper::Throw("Toolkit", "transport::NullTransport", "Read", + "transport is not open yet"); } ProfilerStart("read"); if (start + size > Impl->Capacity) { - helper::Throw("Toolkit", "transport::NullTransport", - "Read", "size+start exceeds capacity"); + helper::Throw("Toolkit", "transport::NullTransport", "Read", + "size+start exceeds capacity"); } std::memset(buffer, 0, size); Impl->CurPos = start + size; @@ -92,8 +92,8 @@ void NullTransport::Flush() { if (!Impl->IsOpen) { - helper::Throw("Toolkit", "transport::NullTransport", - "Flush", "transport is not open yet"); + helper::Throw("Toolkit", "transport::NullTransport", "Flush", + "transport is not open yet"); } } @@ -101,8 +101,8 @@ void NullTransport::Close() { if (!Impl->IsOpen) { - helper::Throw("Toolkit", "transport::NullTransport", - "Close", "transport is not open yet"); + helper::Throw("Toolkit", "transport::NullTransport", "Close", + "transport is not open yet"); } Impl->CurPos = 0; @@ -116,8 +116,7 @@ void NullTransport::SeekToEnd() { if (!Impl->IsOpen) { - helper::Throw("Toolkit", "transport::NullTransport", - "SeekToEnd", + helper::Throw("Toolkit", "transport::NullTransport", "SeekToEnd", "transport is not open yet"); } Impl->CurPos = Impl->Capacity - 1; @@ -127,8 +126,7 @@ void NullTransport::SeekToBegin() { if (!Impl->IsOpen) { - helper::Throw("Toolkit", "transport::NullTransport", - "SeekToBegin", + helper::Throw("Toolkit", "transport::NullTransport", "SeekToBegin", "transport is not open yet"); } Impl->CurPos = 0; @@ -138,8 +136,8 @@ void NullTransport::Seek(const size_t start) { if (!Impl->IsOpen) { - helper::Throw("Toolkit", "transport::NullTransport", - "Seek", "transport is not open yet"); + helper::Throw("Toolkit", "transport::NullTransport", "Seek", + "transport is not open yet"); } Impl->CurPos = start; } @@ -148,8 +146,7 @@ void NullTransport::Truncate(const size_t length) { if (!Impl->IsOpen) { - helper::Throw("Toolkit", "transport::NullTransport", - "Truncate", + helper::Throw("Toolkit", "transport::NullTransport", "Truncate", "transport is not open yet"); } Impl->Capacity = length; diff --git a/source/adios2/toolkit/transport/null/NullTransport.h b/source/adios2/toolkit/transport/null/NullTransport.h index 1595ce793a..f0311e6f37 100644 --- a/source/adios2/toolkit/transport/null/NullTransport.h +++ b/source/adios2/toolkit/transport/null/NullTransport.h @@ -34,13 +34,12 @@ class NullTransport : public Transport virtual ~NullTransport(); - void Open(const std::string &name, const Mode openMode, - const bool async = false, const bool directio = false) override; + void Open(const std::string &name, const Mode openMode, const bool async = false, + const bool directio = false) override; void SetBuffer(char *buffer, size_t size) override; - void Write(const char *buffer, size_t size, - size_t start = MaxSizeT) override; + void Write(const char *buffer, size_t size, size_t start = MaxSizeT) override; void Read(char *buffer, size_t size, size_t start = MaxSizeT) override; diff --git a/source/adios2/toolkit/transport/shm/ShmSystemV.cpp b/source/adios2/toolkit/transport/shm/ShmSystemV.cpp index 024d65e32c..bd47a35b2c 100644 --- a/source/adios2/toolkit/transport/shm/ShmSystemV.cpp +++ b/source/adios2/toolkit/transport/shm/ShmSystemV.cpp @@ -22,16 +22,15 @@ namespace adios2 namespace transport { -ShmSystemV::ShmSystemV(const unsigned int projectID, const size_t size, - helper::Comm const &comm, const bool removeAtClose) +ShmSystemV::ShmSystemV(const unsigned int projectID, const size_t size, helper::Comm const &comm, + const bool removeAtClose) : Transport("Shm", "SystemV", comm), m_ProjectID(projectID), m_Size(size), m_RemoveAtClose(removeAtClose) { if (projectID == 0) { - helper::Throw( - "Toolkit", "transport::shm::ShmSystemV", "ShmSystemV", - "projectID can't be zero, in shared memory segment"); + helper::Throw("Toolkit", "transport::shm::ShmSystemV", "ShmSystemV", + "projectID can't be zero, in shared memory segment"); } } @@ -48,8 +47,8 @@ ShmSystemV::~ShmSystemV() // this might not be correct } } -void ShmSystemV::Open(const std::string &name, const Mode openMode, - const bool async, const bool directio) +void ShmSystemV::Open(const std::string &name, const Mode openMode, const bool async, + const bool directio) { m_Name = name; CheckName(); @@ -79,9 +78,9 @@ void ShmSystemV::Open(const std::string &name, const Mode openMode, break; default: - helper::Throw( - "Toolkit", "transport::shm::ShmSystemV", "Open", - "unknown open mode for shared memory segment " + m_Name); + helper::Throw("Toolkit", "transport::shm::ShmSystemV", "Open", + "unknown open mode for shared memory segment " + + m_Name); } CheckShmID("in call to ShmSystemV shmget at Open"); @@ -114,10 +113,9 @@ void ShmSystemV::Close() ProfilerStop("close"); if (result < 1) { - helper::Throw( - "Toolkit", "transport::shm::ShmSystemV", "Close", - "failed to detach shared memory segment of size " + - std::to_string(m_Size) + " and name " + m_Name); + helper::Throw("Toolkit", "transport::shm::ShmSystemV", "Close", + "failed to detach shared memory segment of size " + + std::to_string(m_Size) + " and name " + m_Name); } if (m_RemoveAtClose) @@ -129,8 +127,8 @@ void ShmSystemV::Close() { helper::Throw( "Toolkit", "transport::shm::ShmSystemV", "Close", - "failed to remove shared memory segment of size " + - std::to_string(m_Size) + " and name " + m_Name); + "failed to remove shared memory segment of size " + std::to_string(m_Size) + + " and name " + m_Name); } } @@ -157,10 +155,10 @@ void ShmSystemV::CheckShmID(const std::string hint) const { if (m_ShmID < 0) { - helper::Throw( - "Toolkit", "transport::shm::ShmSystemV", "CheckShmID", - "Failed shared memory segment of size " + std::to_string(m_Size) + - " and name " + m_Name + ", " + hint); + helper::Throw("Toolkit", "transport::shm::ShmSystemV", "CheckShmID", + "Failed shared memory segment of size " + + std::to_string(m_Size) + " and name " + m_Name + + ", " + hint); } } @@ -170,21 +168,19 @@ void ShmSystemV::CheckBuffer(const std::string hint) const { helper::Throw( "Toolkit", "transport::shm::ShmSystemV", "CheckBuffer", - "nullptr shared memory segment of size " + std::to_string(m_Size) + - " and name " + m_Name + " " + hint); + "nullptr shared memory segment of size " + std::to_string(m_Size) + " and name " + + m_Name + " " + hint); } } -void ShmSystemV::CheckSizes(const size_t start, const size_t size, - const std::string hint) const +void ShmSystemV::CheckSizes(const size_t start, const size_t size, const std::string hint) const { if (start + size > m_Size) { helper::Throw( "Toolkit", "transport::shm::ShmSystemV", "CheckSizes", - "final position (start + size) = (" + std::to_string(start) + - " + " + std::to_string(size) + - " ) exceeding shared memory pre-allocated size:" + + "final position (start + size) = (" + std::to_string(start) + " + " + + std::to_string(size) + " ) exceeding shared memory pre-allocated size:" + std::to_string(m_Size) + "," + hint); } } diff --git a/source/adios2/toolkit/transport/shm/ShmSystemV.h b/source/adios2/toolkit/transport/shm/ShmSystemV.h index fb8838448e..29868bff0d 100644 --- a/source/adios2/toolkit/transport/shm/ShmSystemV.h +++ b/source/adios2/toolkit/transport/shm/ShmSystemV.h @@ -33,13 +33,13 @@ class ShmSystemV : public Transport * greater than zero. * @param size shared-memory pre-allocated data size */ - ShmSystemV(const unsigned int projectID, const size_t size, - helper::Comm const &comm, const bool removeAtClose = false); + ShmSystemV(const unsigned int projectID, const size_t size, helper::Comm const &comm, + const bool removeAtClose = false); ~ShmSystemV(); - void Open(const std::string &name, const Mode openMode, - const bool async = false, const bool directio = false) final; + void Open(const std::string &name, const Mode openMode, const bool async = false, + const bool directio = false) final; void Write(const char *buffer, size_t size, size_t start = MaxSizeT) final; @@ -80,8 +80,7 @@ class ShmSystemV : public Transport void CheckBuffer(const std::string hint) const; - void CheckSizes(const size_t start, const size_t size, - const std::string hint) const; + void CheckSizes(const size_t start, const size_t size, const std::string hint) const; }; } // end namespace transport diff --git a/source/adios2/toolkit/transportman/TransportMan.cpp b/source/adios2/toolkit/transportman/TransportMan.cpp index c2e21b6aec..59d3033f5d 100644 --- a/source/adios2/toolkit/transportman/TransportMan.cpp +++ b/source/adios2/toolkit/transportman/TransportMan.cpp @@ -43,20 +43,15 @@ namespace adios2 namespace transportman { -TransportMan::TransportMan(core::IO &io, helper::Comm &comm) -: m_IO(io), m_Comm(comm) -{ -} +TransportMan::TransportMan(core::IO &io, helper::Comm &comm) : m_IO(io), m_Comm(comm) {} void TransportMan::MkDirsBarrier(const std::vector &fileNames, - const std::vector ¶metersVector, - const bool nodeLocal) + const std::vector ¶metersVector, const bool nodeLocal) { auto lf_CreateDirectories = [&](const std::vector &fileNames) { for (size_t i = 0; i < fileNames.size(); ++i) { - const auto lastPathSeparator( - fileNames[i].find_last_of(PathSeparator)); + const auto lastPathSeparator(fileNames[i].find_last_of(PathSeparator)); if (lastPathSeparator == std::string::npos) { continue; @@ -65,8 +60,7 @@ void TransportMan::MkDirsBarrier(const std::vector &fileNames, const std::string type = parameters.at("transport"); if (type == "File" || type == "file") { - const std::string path( - fileNames[i].substr(0, lastPathSeparator)); + const std::string path(fileNames[i].substr(0, lastPathSeparator)); std::string library; helper::SetParameterValue("Library", parameters, library); @@ -74,8 +68,7 @@ void TransportMan::MkDirsBarrier(const std::vector &fileNames, if (library == "Daos" || library == "daos") { #ifdef ADIOS2_HAVE_DAOS - auto transport = - std::make_shared(m_Comm); + auto transport = std::make_shared(m_Comm); transport->SetParameters({{"SingleProcess", "true"}}); // int rank = m_Comm.Rank(); // std::cout << "rank " << rank << ": start @@ -109,10 +102,8 @@ void TransportMan::MkDirsBarrier(const std::vector &fileNames, } } -void TransportMan::OpenFiles(const std::vector &fileNames, - const Mode openMode, - const std::vector ¶metersVector, - const bool profile) +void TransportMan::OpenFiles(const std::vector &fileNames, const Mode openMode, + const std::vector ¶metersVector, const bool profile) { for (size_t i = 0; i < fileNames.size(); ++i) { @@ -121,17 +112,16 @@ void TransportMan::OpenFiles(const std::vector &fileNames, if (type == "file") { - std::shared_ptr file = OpenFileTransport( - fileNames[i], openMode, parameters, profile, false, m_Comm); + std::shared_ptr file = + OpenFileTransport(fileNames[i], openMode, parameters, profile, false, m_Comm); m_Transports.insert({i, file}); } } } -void TransportMan::OpenFiles(const std::vector &fileNames, - const Mode openMode, - const std::vector ¶metersVector, - const bool profile, const helper::Comm &chainComm) +void TransportMan::OpenFiles(const std::vector &fileNames, const Mode openMode, + const std::vector ¶metersVector, const bool profile, + const helper::Comm &chainComm) { for (size_t i = 0; i < fileNames.size(); ++i) { @@ -140,26 +130,24 @@ void TransportMan::OpenFiles(const std::vector &fileNames, if (type == "file") { - std::shared_ptr file = OpenFileTransport( - fileNames[i], openMode, parameters, profile, true, chainComm); + std::shared_ptr file = + OpenFileTransport(fileNames[i], openMode, parameters, profile, true, chainComm); m_Transports.insert({i, file}); } } } -void TransportMan::OpenFileID(const std::string &name, const size_t id, - const Mode mode, const Params ¶meters, - const bool profile) +void TransportMan::OpenFileID(const std::string &name, const size_t id, const Mode mode, + const Params ¶meters, const bool profile) { std::shared_ptr file = - OpenFileTransport(name, mode, helper::LowerCaseParams(parameters), - profile, false, m_Comm); + OpenFileTransport(name, mode, helper::LowerCaseParams(parameters), profile, false, m_Comm); m_Transports.insert({id, file}); } -std::vector TransportMan::GetFilesBaseNames( - const std::string &baseName, - const std::vector ¶metersVector) const +std::vector +TransportMan::GetFilesBaseNames(const std::string &baseName, + const std::vector ¶metersVector) const { if (parametersVector.size() <= 1) { @@ -184,13 +172,12 @@ std::vector TransportMan::GetFilesBaseNames( { if (itType->second.count(name) == 1) { - helper::Throw( - "Toolkit", "TransportMan", "OpenFileID", - "two IO AddTransport of the same type can't " - "have the same name : " + - name + - ", use Name=value parameter, in " - "call to Open"); + helper::Throw("Toolkit", "TransportMan", "OpenFileID", + "two IO AddTransport of the same type can't " + "have the same name : " + + name + + ", use Name=value parameter, in " + "call to Open"); } } typeTransportNames[type].insert(name); @@ -212,8 +199,7 @@ std::vector TransportMan::GetTransportsTypes() noexcept return types; } -std::vector -TransportMan::GetTransportsProfilers() noexcept +std::vector TransportMan::GetTransportsProfilers() noexcept { std::vector profilers; profilers.reserve(m_Transports.size()); @@ -226,8 +212,7 @@ TransportMan::GetTransportsProfilers() noexcept return profilers; } -void TransportMan::WriteFiles(const char *buffer, const size_t size, - const int transportIndex) +void TransportMan::WriteFiles(const char *buffer, const size_t size, const int transportIndex) { if (transportIndex == -1) { @@ -243,14 +228,14 @@ void TransportMan::WriteFiles(const char *buffer, const size_t size, else { auto itTransport = m_Transports.find(transportIndex); - CheckFile(itTransport, ", in call to WriteFiles with index " + - std::to_string(transportIndex)); + CheckFile(itTransport, + ", in call to WriteFiles with index " + std::to_string(transportIndex)); itTransport->second->Write(buffer, size); } } -void TransportMan::WriteFileAt(const char *buffer, const size_t size, - const size_t start, const int transportIndex) +void TransportMan::WriteFileAt(const char *buffer, const size_t size, const size_t start, + const int transportIndex) { if (transportIndex == -1) { @@ -266,14 +251,13 @@ void TransportMan::WriteFileAt(const char *buffer, const size_t size, else { auto itTransport = m_Transports.find(transportIndex); - CheckFile(itTransport, ", in call to WriteFileAt with index " + - std::to_string(transportIndex)); + CheckFile(itTransport, + ", in call to WriteFileAt with index " + std::to_string(transportIndex)); itTransport->second->Write(buffer, size, start); } } -void TransportMan::WriteFiles(const core::iovec *iov, const size_t iovcnt, - const int transportIndex) +void TransportMan::WriteFiles(const core::iovec *iov, const size_t iovcnt, const int transportIndex) { if (transportIndex == -1) { @@ -289,14 +273,14 @@ void TransportMan::WriteFiles(const core::iovec *iov, const size_t iovcnt, else { auto itTransport = m_Transports.find(transportIndex); - CheckFile(itTransport, ", in call to WriteFiles with index " + - std::to_string(transportIndex)); + CheckFile(itTransport, + ", in call to WriteFiles with index " + std::to_string(transportIndex)); itTransport->second->WriteV(iov, static_cast(iovcnt)); } } -void TransportMan::WriteFileAt(const core::iovec *iov, const size_t iovcnt, - const size_t start, const int transportIndex) +void TransportMan::WriteFileAt(const core::iovec *iov, const size_t iovcnt, const size_t start, + const int transportIndex) { if (transportIndex == -1) { @@ -312,8 +296,8 @@ void TransportMan::WriteFileAt(const core::iovec *iov, const size_t iovcnt, else { auto itTransport = m_Transports.find(transportIndex); - CheckFile(itTransport, ", in call to WriteFileAt with index " + - std::to_string(transportIndex)); + CheckFile(itTransport, + ", in call to WriteFileAt with index " + std::to_string(transportIndex)); itTransport->second->WriteV(iov, static_cast(iovcnt), start); } } @@ -334,8 +318,8 @@ void TransportMan::SeekToFileEnd(const int transportIndex) else { auto itTransport = m_Transports.find(transportIndex); - CheckFile(itTransport, ", in call to SeekToFileEnd with index " + - std::to_string(transportIndex)); + CheckFile(itTransport, + ", in call to SeekToFileEnd with index " + std::to_string(transportIndex)); itTransport->second->SeekToEnd(); } } @@ -356,8 +340,8 @@ void TransportMan::SeekToFileBegin(const int transportIndex) else { auto itTransport = m_Transports.find(transportIndex); - CheckFile(itTransport, ", in call to SeekToFileBegin with index " + - std::to_string(transportIndex)); + CheckFile(itTransport, + ", in call to SeekToFileBegin with index " + std::to_string(transportIndex)); itTransport->second->SeekToBegin(); } } @@ -378,8 +362,7 @@ void TransportMan::SeekTo(const size_t start, const int transportIndex) else { auto itTransport = m_Transports.find(transportIndex); - CheckFile(itTransport, ", in call to SeekTo with index " + - std::to_string(transportIndex)); + CheckFile(itTransport, ", in call to SeekTo with index " + std::to_string(transportIndex)); itTransport->second->Seek(start); } } @@ -400,8 +383,8 @@ void TransportMan::Truncate(const size_t length, const int transportIndex) else { auto itTransport = m_Transports.find(transportIndex); - CheckFile(itTransport, ", in call to Truncate with index " + - std::to_string(transportIndex)); + CheckFile(itTransport, + ", in call to Truncate with index " + std::to_string(transportIndex)); itTransport->second->Truncate(length); } } @@ -409,8 +392,7 @@ void TransportMan::Truncate(const size_t length, const int transportIndex) size_t TransportMan::GetFileSize(const size_t transportIndex) const { auto itTransport = m_Transports.find(transportIndex); - CheckFile(itTransport, ", in call to GetFileSize with index " + - std::to_string(transportIndex)); + CheckFile(itTransport, ", in call to GetFileSize with index " + std::to_string(transportIndex)); return itTransport->second->GetSize(); } @@ -418,8 +400,7 @@ void TransportMan::ReadFile(char *buffer, const size_t size, const size_t start, const size_t transportIndex) { auto itTransport = m_Transports.find(transportIndex); - CheckFile(itTransport, ", in call to ReadFile with index " + - std::to_string(transportIndex)); + CheckFile(itTransport, ", in call to ReadFile with index " + std::to_string(transportIndex)); itTransport->second->Read(buffer, size, start); } @@ -440,8 +421,8 @@ void TransportMan::FlushFiles(const int transportIndex) else { auto itTransport = m_Transports.find(transportIndex); - CheckFile(itTransport, ", in call to FlushFiles with index " + - std::to_string(transportIndex)); + CheckFile(itTransport, + ", in call to FlushFiles with index " + std::to_string(transportIndex)); itTransport->second->Flush(); } } @@ -463,8 +444,8 @@ void TransportMan::CloseFiles(const int transportIndex) else { auto itTransport = m_Transports.find(transportIndex); - CheckFile(itTransport, ", in call to CloseFiles with index " + - std::to_string(transportIndex)); + CheckFile(itTransport, + ", in call to CloseFiles with index " + std::to_string(transportIndex)); itTransport->second->Close(); m_Transports.erase(itTransport); } @@ -487,8 +468,8 @@ void TransportMan::DeleteFiles(const int transportIndex) else { auto itTransport = m_Transports.find(transportIndex); - CheckFile(itTransport, ", in call to CloseFiles with index " + - std::to_string(transportIndex)); + CheckFile(itTransport, + ", in call to CloseFiles with index " + std::to_string(transportIndex)); itTransport->second->Delete(); } } @@ -509,15 +490,13 @@ bool TransportMan::AllTransportsClosed() const noexcept return allClose; } -bool TransportMan::FileExists(const std::string &name, const Params ¶meters, - const bool profile) +bool TransportMan::FileExists(const std::string &name, const Params ¶meters, const bool profile) { bool exists = false; try { std::shared_ptr file = OpenFileTransport( - name, Mode::Read, helper::LowerCaseParams(parameters), profile, - false, m_Comm); + name, Mode::Read, helper::LowerCaseParams(parameters), profile, false, m_Comm); exists = true; file->Close(); } @@ -528,9 +507,11 @@ bool TransportMan::FileExists(const std::string &name, const Params ¶meters, } // PRIVATE -std::shared_ptr TransportMan::OpenFileTransport( - const std::string &fileName, const Mode openMode, const Params ¶meters, - const bool profile, const bool useComm, const helper::Comm &chainComm) +std::shared_ptr TransportMan::OpenFileTransport(const std::string &fileName, + const Mode openMode, + const Params ¶meters, + const bool profile, const bool useComm, + const helper::Comm &chainComm) { // This function expects Params with lower case keys!!! @@ -542,11 +523,10 @@ std::shared_ptr TransportMan::OpenFileTransport( std::stringstream ss(bufferedValueStr); if (!(ss >> std::boolalpha >> bufferedValue)) { - helper::Throw( - "Toolkit", "TransportMan", "OpenFileTransport", - "invalid value for \"buffered\" transport " - "parameter: " + - bufferedValueStr); + helper::Throw("Toolkit", "TransportMan", "OpenFileTransport", + "invalid value for \"buffered\" transport " + "parameter: " + + bufferedValueStr); } } return bufferedValue; @@ -618,9 +598,8 @@ std::shared_ptr TransportMan::OpenFileTransport( } else { - helper::Throw( - "Toolkit", "TransportMan", "OpenFileTransport", - "invalid IO AddTransport library " + library); + helper::Throw("Toolkit", "TransportMan", "OpenFileTransport", + "invalid IO AddTransport library " + library); } }; @@ -638,15 +617,13 @@ std::shared_ptr TransportMan::OpenFileTransport( return helper::StringToTimeUnit(profileUnits); }; - auto lf_GetAsyncOpen = [&](const std::string defaultAsync, - const Params ¶meters) -> bool { + auto lf_GetAsyncOpen = [&](const std::string defaultAsync, const Params ¶meters) -> bool { std::string AsyncOpen = defaultAsync; helper::SetParameterValue("asyncopen", parameters, AsyncOpen); return helper::StringTo(AsyncOpen, ""); }; - auto lf_GetDirectIO = [&](const std::string defaultValue, - const Params ¶meters) -> bool { + auto lf_GetDirectIO = [&](const std::string defaultValue, const Params ¶meters) -> bool { std::string directio = defaultValue; helper::SetParameterValue("directio", parameters, directio); return helper::StringTo(directio, ""); @@ -654,15 +631,13 @@ std::shared_ptr TransportMan::OpenFileTransport( // BODY OF FUNCTION starts here std::shared_ptr transport; - const std::string library = - helper::LowerCase(lf_GetLibrary(DefaultFileLibrary, parameters)); + const std::string library = helper::LowerCase(lf_GetLibrary(DefaultFileLibrary, parameters)); lf_SetFileTransport(library, transport); // Default or user ProfileUnits in parameters if (profile) { - transport->InitProfiler(openMode, - lf_GetTimeUnits(DefaultTimeUnit, parameters)); + transport->InitProfiler(openMode, lf_GetTimeUnits(DefaultTimeUnit, parameters)); } transport->SetParameters(parameters); @@ -670,37 +645,32 @@ std::shared_ptr TransportMan::OpenFileTransport( // open if (useComm) { - transport->OpenChain(fileName, openMode, chainComm, - lf_GetAsyncOpen("false", parameters), + transport->OpenChain(fileName, openMode, chainComm, lf_GetAsyncOpen("false", parameters), lf_GetDirectIO("false", parameters)); } else { - transport->Open(fileName, openMode, - lf_GetAsyncOpen("false", parameters), + transport->Open(fileName, openMode, lf_GetAsyncOpen("false", parameters), lf_GetDirectIO("false", parameters)); } return transport; } void TransportMan::CheckFile( - std::unordered_map>::const_iterator - itTransport, + std::unordered_map>::const_iterator itTransport, const std::string hint) const { if (itTransport == m_Transports.end()) { - helper::Throw("Toolkit", "TransportMan", - "CheckFile", + helper::Throw("Toolkit", "TransportMan", "CheckFile", "invalid transport " + hint); } if (itTransport->second->m_Type != "File") { - helper::Throw( - "Toolkit", "TransportMan", "CheckFile", - "invalid type " + itTransport->second->m_Library + - ", must be file " + hint); + helper::Throw("Toolkit", "TransportMan", "CheckFile", + "invalid type " + itTransport->second->m_Library + + ", must be file " + hint); } } diff --git a/source/adios2/toolkit/transportman/TransportMan.h b/source/adios2/toolkit/transportman/TransportMan.h index 32ae4b1343..acf3ac1cd2 100644 --- a/source/adios2/toolkit/transportman/TransportMan.h +++ b/source/adios2/toolkit/transportman/TransportMan.h @@ -61,8 +61,7 @@ class TransportMan * @param nodeLocal true: all ranks create a directory */ void MkDirsBarrier(const std::vector &fileNames, - const std::vector ¶metersVector, - const bool nodeLocal); + const std::vector ¶metersVector, const bool nodeLocal); /** * OpenFiles passed from fileNames @@ -71,10 +70,8 @@ class TransportMan * @param parametersVector from IO * @param profile */ - void OpenFiles(const std::vector &fileNames, - const Mode openMode, - const std::vector ¶metersVector, - const bool profile); + void OpenFiles(const std::vector &fileNames, const Mode openMode, + const std::vector ¶metersVector, const bool profile); /** * OpenFiles passed from fileNames, in a chain to avoid DOS attacking of the @@ -85,10 +82,9 @@ class TransportMan * @param profile * @oaram chainComm */ - void OpenFiles(const std::vector &fileNames, - const Mode openMode, - const std::vector ¶metersVector, - const bool profile, const helper::Comm &chainComm); + void OpenFiles(const std::vector &fileNames, const Mode openMode, + const std::vector ¶metersVector, const bool profile, + const helper::Comm &chainComm); /** * Used for sub-files defined by index @@ -112,9 +108,8 @@ class TransportMan * function) * @return transport base names */ - std::vector - GetFilesBaseNames(const std::string &baseName, - const std::vector ¶metersVector) const; + std::vector GetFilesBaseNames(const std::string &baseName, + const std::vector ¶metersVector) const; /** * m_Type from m_Transports based on derived classes of Transport @@ -134,8 +129,7 @@ class TransportMan * @param buffer * @param size */ - void WriteFiles(const char *buffer, const size_t size, - const int transportIndex = -1); + void WriteFiles(const char *buffer, const size_t size, const int transportIndex = -1); /** * Write data to a specific location in files @@ -153,8 +147,7 @@ class TransportMan * @param iovec array pointer * @param iovcnt number of entries */ - void WriteFiles(const core::iovec *iov, const size_t iovcnt, - const int transportIndex = -1); + void WriteFiles(const core::iovec *iov, const size_t iovcnt, const int transportIndex = -1); /** * Write data to a specific location in files, writev version @@ -163,8 +156,8 @@ class TransportMan * @param iovcnt number of entries * @param start offset in file */ - void WriteFileAt(const core::iovec *iov, const size_t iovcnt, - const size_t start, const int transportIndex = -1); + void WriteFileAt(const core::iovec *iov, const size_t iovcnt, const size_t start, + const int transportIndex = -1); size_t GetFileSize(const size_t transportIndex = 0) const; @@ -215,22 +208,19 @@ class TransportMan * @param parameters * @param profile */ - bool FileExists(const std::string &name, const Params ¶meters, - const bool profile); + bool FileExists(const std::string &name, const Params ¶meters, const bool profile); protected: core::IO &m_IO; helper::Comm const &m_Comm; - std::shared_ptr - OpenFileTransport(const std::string &fileName, const Mode openMode, - const Params ¶meters, const bool profile, - const bool useComm, const helper::Comm &chainComm); + std::shared_ptr OpenFileTransport(const std::string &fileName, const Mode openMode, + const Params ¶meters, const bool profile, + const bool useComm, const helper::Comm &chainComm); - void CheckFile( - std::unordered_map>::const_iterator - itTransport, - const std::string hint) const; + void + CheckFile(std::unordered_map>::const_iterator itTransport, + const std::string hint) const; void WaitForAsync() const; }; diff --git a/source/adios2/toolkit/zmq/zmqpubsub/ZmqPubSub.cpp b/source/adios2/toolkit/zmq/zmqpubsub/ZmqPubSub.cpp index 0b6ee2b78d..7f71eccb1f 100644 --- a/source/adios2/toolkit/zmq/zmqpubsub/ZmqPubSub.cpp +++ b/source/adios2/toolkit/zmq/zmqpubsub/ZmqPubSub.cpp @@ -41,52 +41,45 @@ void ZmqPubSub::OpenPublisher(const std::string &address) m_ZmqContext = zmq_ctx_new(); if (not m_ZmqContext) { - helper::Throw("Toolkit", "ZmqPubSub", - "OpenPublisher", + helper::Throw("Toolkit", "ZmqPubSub", "OpenPublisher", "creating zmq context failed"); } m_ZmqSocket = zmq_socket(m_ZmqContext, ZMQ_PUB); if (not m_ZmqSocket) { - helper::Throw("Toolkit", "ZmqPubSub", - "OpenPublisher", + helper::Throw("Toolkit", "ZmqPubSub", "OpenPublisher", "creating zmq socket failed"); } int error = zmq_bind(m_ZmqSocket, address.c_str()); if (error) { - helper::Throw("Toolkit", "ZmqPubSub", - "OpenPublisher", + helper::Throw("Toolkit", "ZmqPubSub", "OpenPublisher", "binding zmq socket failed"); } } -void ZmqPubSub::OpenSubscriber(const std::string &address, - const size_t bufferSize) +void ZmqPubSub::OpenSubscriber(const std::string &address, const size_t bufferSize) { m_ZmqContext = zmq_ctx_new(); if (not m_ZmqContext) { - helper::Throw("Toolkit", "ZmqPubSub", - "OpenSubscriber", + helper::Throw("Toolkit", "ZmqPubSub", "OpenSubscriber", "creating zmq context failed"); } m_ZmqSocket = zmq_socket(m_ZmqContext, ZMQ_SUB); if (not m_ZmqSocket) { - helper::Throw("Toolkit", "ZmqPubSub", - "OpenSubscriber", + helper::Throw("Toolkit", "ZmqPubSub", "OpenSubscriber", "creating zmq socket failed"); } int error = zmq_connect(m_ZmqSocket, address.c_str()); if (error) { - helper::Throw("Toolkit", "ZmqPubSub", - "OpenSubscriber", + helper::Throw("Toolkit", "ZmqPubSub", "OpenSubscriber", "connecting zmq socket failed"); } @@ -105,8 +98,7 @@ void ZmqPubSub::Send(std::shared_ptr> buffer) std::shared_ptr> ZmqPubSub::Receive() { - int ret = zmq_recv(m_ZmqSocket, m_ReceiverBuffer.data(), - m_ReceiverBuffer.size(), ZMQ_DONTWAIT); + int ret = zmq_recv(m_ZmqSocket, m_ReceiverBuffer.data(), m_ReceiverBuffer.size(), ZMQ_DONTWAIT); if (ret > 0) { auto buff = std::make_shared>(ret); diff --git a/source/adios2/toolkit/zmq/zmqpubsub/ZmqPubSub.h b/source/adios2/toolkit/zmq/zmqpubsub/ZmqPubSub.h index a0c381a053..0fa29601bd 100644 --- a/source/adios2/toolkit/zmq/zmqpubsub/ZmqPubSub.h +++ b/source/adios2/toolkit/zmq/zmqpubsub/ZmqPubSub.h @@ -29,8 +29,7 @@ class ZmqPubSub ~ZmqPubSub(); void OpenPublisher(const std::string &address); - void OpenSubscriber(const std::string &address, - const size_t receiveBufferSize); + void OpenSubscriber(const std::string &address, const size_t receiveBufferSize); void Send(std::shared_ptr> buffer); std::shared_ptr> Receive(); diff --git a/source/adios2/toolkit/zmq/zmqreqrep/ZmqReqRep.cpp b/source/adios2/toolkit/zmq/zmqreqrep/ZmqReqRep.cpp index d73e228ab5..1ad92a230d 100644 --- a/source/adios2/toolkit/zmq/zmqreqrep/ZmqReqRep.cpp +++ b/source/adios2/toolkit/zmq/zmqreqrep/ZmqReqRep.cpp @@ -41,8 +41,7 @@ ZmqReqRep::~ZmqReqRep() } } -void ZmqReqRep::OpenRequester(const int timeout, - const size_t receiverBufferSize) +void ZmqReqRep::OpenRequester(const int timeout, const size_t receiverBufferSize) { m_Timeout = timeout; m_ReceiverBuffer.reserve(receiverBufferSize); @@ -66,8 +65,7 @@ void ZmqReqRep::OpenRequester(const std::string &address, const int timeout, zmq_setsockopt(m_Socket, ZMQ_LINGER, &m_Timeout, sizeof(m_Timeout)); auto now_time = std::chrono::system_clock::now(); - auto duration = std::chrono::duration_cast( - now_time - start_time); + auto duration = std::chrono::duration_cast(now_time - start_time); if (duration.count() > m_Timeout) { zmq_close(m_Socket); @@ -102,8 +100,7 @@ void ZmqReqRep::OpenReplier(const std::string &address, const int timeout, std::shared_ptr> ZmqReqRep::ReceiveRequest() { - int bytes = zmq_recv(m_Socket, m_ReceiverBuffer.data(), - m_ReceiverBuffer.capacity(), 0); + int bytes = zmq_recv(m_Socket, m_ReceiverBuffer.data(), m_ReceiverBuffer.capacity(), 0); if (bytes <= 0) { return nullptr; @@ -123,9 +120,8 @@ void ZmqReqRep::SendReply(const void *reply, const size_t size) zmq_send(m_Socket, reply, size, 0); } -std::shared_ptr> -ZmqReqRep::Request(const char *request, const size_t size, - const std::string &address) +std::shared_ptr> ZmqReqRep::Request(const char *request, const size_t size, + const std::string &address) { auto reply = std::make_shared>(); void *socket = zmq_socket(m_Context, ZMQ_REQ); @@ -140,8 +136,7 @@ ZmqReqRep::Request(const char *request, const size_t size, zmq_setsockopt(socket, ZMQ_LINGER, &m_Timeout, sizeof(m_Timeout)); auto now_time = std::chrono::system_clock::now(); - auto duration = std::chrono::duration_cast( - now_time - start_time); + auto duration = std::chrono::duration_cast(now_time - start_time); if (duration.count() > m_Timeout) { zmq_close(socket); @@ -155,8 +150,7 @@ ZmqReqRep::Request(const char *request, const size_t size, { ret = zmq_send(socket, request, size, 0); auto now_time = std::chrono::system_clock::now(); - auto duration = std::chrono::duration_cast( - now_time - start_time); + auto duration = std::chrono::duration_cast(now_time - start_time); if (duration.count() > m_Timeout) { zmq_close(socket); @@ -168,11 +162,9 @@ ZmqReqRep::Request(const char *request, const size_t size, start_time = std::chrono::system_clock::now(); while (ret < 1) { - ret = zmq_recv(socket, m_ReceiverBuffer.data(), - m_ReceiverBuffer.capacity(), 0); + ret = zmq_recv(socket, m_ReceiverBuffer.data(), m_ReceiverBuffer.capacity(), 0); auto now_time = std::chrono::system_clock::now(); - auto duration = std::chrono::duration_cast( - now_time - start_time); + auto duration = std::chrono::duration_cast(now_time - start_time); if (duration.count() > m_Timeout) { zmq_close(socket); @@ -186,8 +178,7 @@ ZmqReqRep::Request(const char *request, const size_t size, return reply; } -std::shared_ptr> ZmqReqRep::Request(const char *request, - const size_t size) +std::shared_ptr> ZmqReqRep::Request(const char *request, const size_t size) { auto reply = std::make_shared>(); @@ -197,8 +188,7 @@ std::shared_ptr> ZmqReqRep::Request(const char *request, { ret = zmq_send(m_Socket, request, size, 0); auto now_time = std::chrono::system_clock::now(); - auto duration = std::chrono::duration_cast( - now_time - start_time); + auto duration = std::chrono::duration_cast(now_time - start_time); if (duration.count() > m_Timeout) { zmq_close(m_Socket); @@ -210,11 +200,9 @@ std::shared_ptr> ZmqReqRep::Request(const char *request, start_time = std::chrono::system_clock::now(); while (ret < 1) { - ret = zmq_recv(m_Socket, m_ReceiverBuffer.data(), - m_ReceiverBuffer.capacity(), 0); + ret = zmq_recv(m_Socket, m_ReceiverBuffer.data(), m_ReceiverBuffer.capacity(), 0); auto now_time = std::chrono::system_clock::now(); - auto duration = std::chrono::duration_cast( - now_time - start_time); + auto duration = std::chrono::duration_cast(now_time - start_time); if (duration.count() > m_Timeout) { zmq_close(m_Socket); diff --git a/source/adios2/toolkit/zmq/zmqreqrep/ZmqReqRep.h b/source/adios2/toolkit/zmq/zmqreqrep/ZmqReqRep.h index 56cae2b2aa..93902a9995 100644 --- a/source/adios2/toolkit/zmq/zmqreqrep/ZmqReqRep.h +++ b/source/adios2/toolkit/zmq/zmqreqrep/ZmqReqRep.h @@ -32,10 +32,9 @@ class ZmqReqRep void OpenRequester(const int timeout, const size_t receiverBufferSize); void OpenRequester(const std::string &address, const int timeout, const size_t receiverBufferSize); - std::shared_ptr> - Request(const char *request, const size_t size, const std::string &address); - std::shared_ptr> Request(const char *request, - const size_t size); + std::shared_ptr> Request(const char *request, const size_t size, + const std::string &address); + std::shared_ptr> Request(const char *request, const size_t size); // replier void OpenReplier(const std::string &address, const int timeout, diff --git a/source/h5vol/H5VolError.h b/source/h5vol/H5VolError.h index 1c2cceba96..d2a68142ca 100644 --- a/source/h5vol/H5VolError.h +++ b/source/h5vol/H5VolError.h @@ -21,78 +21,78 @@ void safe_free(void *p); void *safe_ralloc(void *ptr, size_t newsize, unsigned long line); #define SAFE_REALLOC(ptr, newsize) safe_ralloc(ptr, newsize, __LINE__) -#define ADIOS_VOL_LOG_ERR(...) \ - { \ - fprintf(stderr, "## ADIOS_VOL_ERROR:"); \ - fprintf(stderr, __VA_ARGS__); \ - fprintf(stderr, " In function:: %s\n", __FUNCTION__); \ - fflush(stderr); \ +#define ADIOS_VOL_LOG_ERR(...) \ + { \ + fprintf(stderr, "## ADIOS_VOL_ERROR:"); \ + fprintf(stderr, __VA_ARGS__); \ + fprintf(stderr, " In function:: %s\n", __FUNCTION__); \ + fflush(stderr); \ } -#define ADIOS_VOL_NOT_SUPPORTED_ERR(...) \ - { \ - fprintf(stderr, "## ADIOS_VOL_NOT_SUPPORTED:"); \ - fprintf(stderr, __VA_ARGS__); \ - fprintf(stderr, " In function:: %s\n", __FUNCTION__); \ - fflush(stderr); \ +#define ADIOS_VOL_NOT_SUPPORTED_ERR(...) \ + { \ + fprintf(stderr, "## ADIOS_VOL_NOT_SUPPORTED:"); \ + fprintf(stderr, __VA_ARGS__); \ + fprintf(stderr, " In function:: %s\n", __FUNCTION__); \ + fflush(stderr); \ } -#define ADIOS_VOL_NOT_SUPPORTED(...) \ - { \ - ADIOS_VOL_NOT_SUPPORTED_ERR(__VA_ARGS__); \ - return -1; /* return err */ \ +#define ADIOS_VOL_NOT_SUPPORTED(...) \ + { \ + ADIOS_VOL_NOT_SUPPORTED_ERR(__VA_ARGS__); \ + return -1; /* return err */ \ } -#define ADIOS_VOL_WARN(...) \ - { \ - fprintf(stderr, " ## ADIOS VOL WARNING :"); \ - fprintf(stderr, __VA_ARGS__); \ - fprintf(stderr, " In function:: %s\n", __FUNCTION__); \ - fflush(stderr); \ +#define ADIOS_VOL_WARN(...) \ + { \ + fprintf(stderr, " ## ADIOS VOL WARNING :"); \ + fprintf(stderr, __VA_ARGS__); \ + fprintf(stderr, " In function:: %s\n", __FUNCTION__); \ + fflush(stderr); \ } -#define SHOW_ERROR_MSG(...) \ - { \ - ADIOS_VOL_LOG_ERR(__VA_ARGS__); \ +#define SHOW_ERROR_MSG(...) \ + { \ + ADIOS_VOL_LOG_ERR(__VA_ARGS__); \ } -#define REQUIRE_NOT_NULL(x) \ - if (NULL == x) \ - { \ - ADIOS_VOL_LOG_ERR(""); \ - return; \ +#define REQUIRE_NOT_NULL(x) \ + if (NULL == x) \ + { \ + ADIOS_VOL_LOG_ERR(""); \ + return; \ } -#define REQUIRE_NOT_NULL_ERR(x, errReturn) \ - if (NULL == x) \ - { \ - ADIOS_VOL_LOG_ERR(""); \ - return errReturn; \ +#define REQUIRE_NOT_NULL_ERR(x, errReturn) \ + if (NULL == x) \ + { \ + ADIOS_VOL_LOG_ERR(""); \ + return errReturn; \ }; // #define REQUIRE_MPI_SUCC(err) if (err != MPI_SUCCESS) //{ADIOS_VOL_MPI_ERR(err);} -#define REQUIRE_MPI_SUCC(err) \ - if (err != MPI_SUCCESS) \ - { \ - ADIOS_VOL_MPI_ERR(err); \ - return -1; \ +#define REQUIRE_MPI_SUCC(err) \ + if (err != MPI_SUCCESS) \ + { \ + ADIOS_VOL_MPI_ERR(err); \ + return -1; \ } -#define REQUIRE_SUCC(valid, errReturn) \ - if (!valid) \ - { \ - return errReturn; \ +#define REQUIRE_SUCC(valid, errReturn) \ + if (!valid) \ + { \ + return errReturn; \ } -#define REQUIRE_SUCC_MSG(valid, errReturn, ...) \ - if (!valid) \ - { \ - SHOW_ERROR_MSG(__VA_ARGS__); \ - return errReturn; \ +#define REQUIRE_SUCC_MSG(valid, errReturn, ...) \ + if (!valid) \ + { \ + SHOW_ERROR_MSG(__VA_ARGS__); \ + return errReturn; \ } -#define REQUIRE_SUCC_ACTION(valid, action, errReturn) \ - if (!valid) \ - { \ - action; \ - return errReturn; \ +#define REQUIRE_SUCC_ACTION(valid, action, errReturn) \ + if (!valid) \ + { \ + action; \ + return errReturn; \ } #endif diff --git a/source/h5vol/H5VolReadWrite.c b/source/h5vol/H5VolReadWrite.c index aedb836e05..1eaa6c5009 100644 --- a/source/h5vol/H5VolReadWrite.c +++ b/source/h5vol/H5VolReadWrite.c @@ -34,14 +34,14 @@ static adios2_adios *m_ADIOS2 = NULL; // static adios2_io *m_IO = NULL; static int m_MPIRank = 0; -#define RANK_ZERO_MSG(...) \ - { \ - if (0 == m_MPIRank) \ - { \ - fprintf(stderr, "## VOL info:"); \ - fprintf(stderr, __VA_ARGS__); \ - fflush(stderr); \ - } \ +#define RANK_ZERO_MSG(...) \ + { \ + if (0 == m_MPIRank) \ + { \ + fprintf(stderr, "## VOL info:"); \ + fprintf(stderr, __VA_ARGS__); \ + fflush(stderr); \ + } \ } void gGenerateFullPath(char *fullPath, const char *parentPath, const char *name) @@ -49,8 +49,7 @@ void gGenerateFullPath(char *fullPath, const char *parentPath, const char *name) size_t ps = strlen(parentPath); size_t ns = strlen(name); size_t length = ps; - bool startsWithDotSlash = - ((ns > 1) && ('/' == name[1]) && ('.' == name[0])); + bool startsWithDotSlash = ((ns > 1) && ('/' == name[1]) && ('.' == name[0])); if ('/' == parentPath[ps - 1]) { @@ -218,8 +217,7 @@ void loadPath(H5VL_ObjDef_t *result, const char *name, H5VL_ObjDef_t *parent) H5VL_ObjDef_t *initVolObj(H5VL_ObjDef_t *parent) { - H5VL_ObjDef_t *result = - (H5VL_ObjDef_t *)SAFE_CALLOC(1, sizeof(H5VL_ObjDef_t)); + H5VL_ObjDef_t *result = (H5VL_ObjDef_t *)SAFE_CALLOC(1, sizeof(H5VL_ObjDef_t)); result->m_Parent = parent; result->m_ObjPtr = NULL; @@ -386,12 +384,10 @@ bool gRemoveUnderGrp(H5VL_ObjDef_t *owner, const char *obj_name) if (ROOT == owner->m_ObjType) { - if (adios2_error_none == - adios2_remove_attribute(&result, owner->m_FileIO, obj_name)) + if (adios2_error_none == adios2_remove_attribute(&result, owner->m_FileIO, obj_name)) if (adios2_true == result) return true; - if (adios2_error_none == - adios2_remove_variable(&result, owner->m_FileIO, obj_name)) + if (adios2_error_none == adios2_remove_variable(&result, owner->m_FileIO, obj_name)) if (adios2_true == result) return true; return false; @@ -404,12 +400,10 @@ bool gRemoveUnderGrp(H5VL_ObjDef_t *owner, const char *obj_name) gGenerateFullPath(fullPath, owner->m_Path, obj_name); // sprintf(fullPath, "%s/%s", owner->m_Path, obj_name); - if (adios2_error_none == - adios2_remove_attribute(&result, owner->m_FileIO, fullPath)) + if (adios2_error_none == adios2_remove_attribute(&result, owner->m_FileIO, fullPath)) if (adios2_true == result) return true; - if (adios2_error_none == - adios2_remove_variable(&result, owner->m_FileIO, fullPath)) + if (adios2_error_none == adios2_remove_variable(&result, owner->m_FileIO, fullPath)) if (adios2_true == result) return true; @@ -475,9 +469,7 @@ H5VL_ObjDef_t *gGetVarObjDef(const char *name, H5VL_ObjDef_t *vol) { if (name[strlen(name) - 1] != '/') { - SHOW_ERROR_MSG( - "H5VL_ADIOS2: Error: No such variable: %s in file\n ", - name); + SHOW_ERROR_MSG("H5VL_ADIOS2: Error: No such variable: %s in file\n ", name); return NULL; } @@ -491,8 +483,7 @@ H5VL_ObjDef_t *gGetVarObjDef(const char *name, H5VL_ObjDef_t *vol) return NULL; } } - H5VL_VarDef_t *varDef = - gCreateVarDef(name, handle->m_Engine, var, -1, -1); + H5VL_VarDef_t *varDef = gCreateVarDef(name, handle->m_Engine, var, -1, -1); return gVarToVolObj(varDef, vol); } @@ -507,8 +498,7 @@ H5VL_ObjDef_t *gGetVarObjDef(const char *name, H5VL_ObjDef_t *vol) adios2_variable *var = gADIOS2InqVar(vol->m_FileIO, fullPath); if (NULL == var) { - SHOW_ERROR_MSG("H5VL_ADIOS2: Error: No such variable:: %s in file\n ", - fullPath); + SHOW_ERROR_MSG("H5VL_ADIOS2: Error: No such variable:: %s in file\n ", fullPath); return NULL; } @@ -518,8 +508,7 @@ H5VL_ObjDef_t *gGetVarObjDef(const char *name, H5VL_ObjDef_t *vol) if (curr->m_Parent == NULL) { H5VL_VarDef_t *varDef = gCreateVarDef( - fullPath, ((H5VL_FileDef_t *)(curr->m_ObjPtr))->m_Engine, var, - -1, -1); + fullPath, ((H5VL_FileDef_t *)(curr->m_ObjPtr))->m_Engine, var, -1, -1); return gVarToVolObj(varDef, vol); } @@ -534,8 +523,7 @@ H5VL_ObjDef_t *gGetVarObjDef(const char *name, H5VL_ObjDef_t *vol) H5VL_AttrDef_t *gCreateAttrDef(const char *name, hid_t type_id, hid_t space_id) { - H5VL_AttrDef_t *attrDef = - (H5VL_AttrDef_t *)SAFE_CALLOC(1, sizeof(H5VL_AttrDef_t)); + H5VL_AttrDef_t *attrDef = (H5VL_AttrDef_t *)SAFE_CALLOC(1, sizeof(H5VL_AttrDef_t)); attrDef->m_Attribute = NULL; attrDef->m_Size = 0; @@ -555,17 +543,15 @@ H5VL_AttrDef_t *gCreateAttrDef(const char *name, hid_t type_id, hid_t space_id) return attrDef; } -H5VL_VarDef_t *gCreateVarDef(const char *name, adios2_engine *engine, - adios2_variable *var, hid_t space_id, - hid_t type_id) +H5VL_VarDef_t *gCreateVarDef(const char *name, adios2_engine *engine, adios2_variable *var, + hid_t space_id, hid_t type_id) { if ((-1 == type_id) && (NULL == var)) { printf("UNABLE to create var with unknown var _and_ unknown type"); return NULL; } - H5VL_VarDef_t *varDef = - (H5VL_VarDef_t *)SAFE_CALLOC(1, sizeof(H5VL_VarDef_t)); + H5VL_VarDef_t *varDef = (H5VL_VarDef_t *)SAFE_CALLOC(1, sizeof(H5VL_VarDef_t)); varDef->m_Name = (char *)SAFE_CALLOC(strlen(name) + 1, sizeof(char)); sprintf(varDef->m_Name, "%s", name); @@ -626,8 +612,7 @@ H5VL_VarDef_t *gCreateVarDef(const char *name, adios2_engine *engine, H5VL_GroupDef_t *gCreateGroupDef(const char *name) { - H5VL_GroupDef_t *grp = - (H5VL_GroupDef_t *)SAFE_CALLOC(1, sizeof(H5VL_GroupDef_t)); + H5VL_GroupDef_t *grp = (H5VL_GroupDef_t *)SAFE_CALLOC(1, sizeof(H5VL_GroupDef_t)); grp->m_Name = (char *)SAFE_CALLOC(strlen(name) + 1, sizeof(char)); sprintf(grp->m_Name, "%s", name); @@ -641,8 +626,7 @@ size_t gGetBranchNameLength(H5VL_ObjDef_t *vol, size_t namelen) if ('/' == (vol->m_Path)[strlen(vol->m_Path) - 1]) return namelen - strlen(vol->m_Path); // minus parent path else - return namelen - strlen(vol->m_Path) - - 1; // minus parent path & seperator + return namelen - strlen(vol->m_Path) - 1; // minus parent path & seperator else return namelen; } @@ -653,11 +637,9 @@ void gGetBranchName(H5VL_ObjDef_t *vol, const char *fullPath, char *name) if ('/' == (vol->m_Path)[strlen(vol->m_Path) - 1]) // minus parent path & seperator - strncpy(name, fullPath + strlen(vol->m_Path), - namelen - strlen(vol->m_Path)); + strncpy(name, fullPath + strlen(vol->m_Path), namelen - strlen(vol->m_Path)); else - strncpy(name, fullPath + strlen(vol->m_Path) + 1, - namelen - strlen(vol->m_Path) - 1); + strncpy(name, fullPath + strlen(vol->m_Path) + 1, namelen - strlen(vol->m_Path) - 1); } // @@ -759,8 +741,7 @@ void gLoadContent(H5VL_ObjDef_t *obj) if ((ROOT == obj->m_ObjType) || (GROUP == obj->m_ObjType)) { adios2_variable **adios_vars; - adios2_inquire_group_variables(&adios_vars, obj->m_Path, &nvars, - obj->m_FileIO); + adios2_inquire_group_variables(&adios_vars, obj->m_Path, &nvars, obj->m_FileIO); obj->m_NumVars = nvars; if (nvars > 0) @@ -772,8 +753,7 @@ void gLoadContent(H5VL_ObjDef_t *obj) if (ATTR != obj->m_ObjType) { adios2_attribute **adios_attrs; - adios2_inquire_group_attributes(&adios_attrs, obj->m_Path, &nattrs, - obj->m_FileIO); + adios2_inquire_group_attributes(&adios_attrs, obj->m_Path, &nattrs, obj->m_FileIO); obj->m_NumAttrs = nattrs; if (nattrs > 0) @@ -792,8 +772,8 @@ void gLoadSubGroups(H5VL_ObjDef_t *obj) if (obj->m_NumSubGroups > 0) return; - adios2_inquire_subgroups(&(obj->m_SubGroupNames), obj->m_Path, - &(obj->m_NumSubGroups), obj->m_FileIO); + adios2_inquire_subgroups(&(obj->m_SubGroupNames), obj->m_Path, &(obj->m_NumSubGroups), + obj->m_FileIO); return; } } @@ -894,21 +874,17 @@ herr_t gADIOS2ReadVar(H5VL_VarDef_t *varDef) if (varDim > 0) { size_t start[varDim], count[varDim]; - if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, - start, count, varDim)) + if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, start, count, varDim)) return -1; - adios2_set_selection(varDef->m_Variable, varDef->m_DimCount, start, - count); + adios2_set_selection(varDef->m_Variable, varDef->m_DimCount, start, count); if (varDef->m_MemSpaceID > 0) { - RANK_ZERO_MSG( - "\n## No memory space is supported for reading in ADIOS...\n"); + RANK_ZERO_MSG("\n## No memory space is supported for reading in ADIOS...\n"); } } - adios2_get(varDef->m_Engine, varDef->m_Variable, varDef->m_Data, - adios2_mode_sync); + adios2_get(varDef->m_Engine, varDef->m_Variable, varDef->m_Data, adios2_mode_sync); return 0; } @@ -926,8 +902,7 @@ adios2_variable *gADIOS2DefineVar(adios2_io *io, H5VL_VarDef_t *varDef) if (0 == varDim) { // scalar - variable = adios2_define_variable(io, varDef->m_Name, varType, - varDim, NULL, NULL, NULL, + variable = adios2_define_variable(io, varDef->m_Name, varType, varDim, NULL, NULL, NULL, adios2_constant_dims_true); } else @@ -937,9 +912,8 @@ adios2_variable *gADIOS2DefineVar(adios2_io *io, H5VL_VarDef_t *varDef) size_t shape[varDim]; gUtilADIOS2GetShape(varDef->m_ShapeID, shape, varDim); - variable = adios2_define_variable(io, varDef->m_Name, varType, - varDim, shape, NULL, NULL, - adios2_constant_dims_false); + variable = adios2_define_variable(io, varDef->m_Name, varType, varDim, shape, NULL, + NULL, adios2_constant_dims_false); } } @@ -958,9 +932,8 @@ adios2_variable *gADIOS2CreateVar(adios2_io *io, H5VL_VarDef_t *varDef) adios2_type varType = gUtilADIOS2Type(varDef->m_TypeID); if (adios2_type_unknown == varType) { - SHOW_ERROR_MSG( - "... ERROR! Unsupported type. Cannot identify var type. %s\n", - varDef->m_Name); + SHOW_ERROR_MSG("... ERROR! Unsupported type. Cannot identify var type. %s\n", + varDef->m_Name); return NULL; } @@ -968,8 +941,7 @@ adios2_variable *gADIOS2CreateVar(adios2_io *io, H5VL_VarDef_t *varDef) if (0 == varDim) { // scalar - variable = adios2_define_variable(io, varDef->m_Name, varType, - varDim, NULL, NULL, NULL, + variable = adios2_define_variable(io, varDef->m_Name, varType, varDim, NULL, NULL, NULL, adios2_constant_dims_true); } else @@ -980,13 +952,12 @@ adios2_variable *gADIOS2CreateVar(adios2_io *io, H5VL_VarDef_t *varDef) gUtilADIOS2GetShape(varDef->m_ShapeID, shape, varDim); size_t start[varDim], count[varDim]; - if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, - start, count, varDim)) + if (H5VL_CODE_FAIL == + gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, start, count, varDim)) return NULL; - variable = adios2_define_variable(io, varDef->m_Name, varType, - varDim, shape, start, count, - adios2_constant_dims_true); + variable = adios2_define_variable(io, varDef->m_Name, varType, varDim, shape, start, + count, adios2_constant_dims_true); } } @@ -996,34 +967,29 @@ adios2_variable *gADIOS2CreateVar(adios2_io *io, H5VL_VarDef_t *varDef) if (varDim > 0) { size_t start[varDim], count[varDim]; - if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, - start, count, varDim)) + if (H5VL_CODE_FAIL == + gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, start, count, varDim)) return NULL; adios2_set_selection(variable, varDim, start, count); - if ((varDef->m_MemSpaceID > 0) && - (varDef->m_MemSpaceID != varDef->m_ShapeID)) + if ((varDef->m_MemSpaceID > 0) && (varDef->m_MemSpaceID != varDef->m_ShapeID)) { - RANK_ZERO_MSG( - "\n## No support of memory space for writing in ADIOS.\n"); + RANK_ZERO_MSG("\n## No support of memory space for writing in ADIOS.\n"); } } - adios2_put(varDef->m_Engine, variable, varDef->m_Data, - adios2_mode_sync); + adios2_put(varDef->m_Engine, variable, varDef->m_Data, adios2_mode_sync); } return variable; } -adios2_attribute *gADIOS2CreateAttr(adios2_io *io, H5VL_AttrDef_t *input, - const char *fullPath) +adios2_attribute *gADIOS2CreateAttr(adios2_io *io, H5VL_AttrDef_t *input, const char *fullPath) { adios2_type attrType = gUtilADIOS2Type(input->m_TypeID); if (adios2_type_unknown == attrType) { - SHOW_ERROR_MSG("... ERROR Unsupported type. Cannot create attr %s\n", - fullPath); + SHOW_ERROR_MSG("... ERROR Unsupported type. Cannot create attr %s\n", fullPath); return NULL; } @@ -1065,8 +1031,8 @@ adios2_attribute *gADIOS2CreateAttr(adios2_io *io, H5VL_AttrDef_t *input, input->m_Name, isVariableSize, strSize); */ if (isVariableSize) - return adios2_define_attribute_array(io, fullPath, attrType, - (input->m_Data), shape[0]); + return adios2_define_attribute_array(io, fullPath, attrType, (input->m_Data), + shape[0]); else { int i; @@ -1075,14 +1041,13 @@ adios2_attribute *gADIOS2CreateAttr(adios2_io *io, H5VL_AttrDef_t *input, for (i = 0; i < shape[0]; i++) { arrayOfStr[i] = malloc(sizeof(char) * strSize + 1); - strncpy(arrayOfStr[i], - (char *)(input->m_Data) + strSize * i, strSize); + strncpy(arrayOfStr[i], (char *)(input->m_Data) + strSize * i, strSize); arrayOfStr[i][strSize] = '\0'; // printf(".... output attr: %d, [%s]", i, arrayOfStr[i]); } - adios2_attribute *result = adios2_define_attribute_array( - io, fullPath, attrType, arrayOfStr, shape[0]); + adios2_attribute *result = + adios2_define_attribute_array(io, fullPath, attrType, arrayOfStr, shape[0]); for (i = 0; i < shape[0]; i++) free(arrayOfStr[i]); return result; @@ -1091,8 +1056,7 @@ adios2_attribute *gADIOS2CreateAttr(adios2_io *io, H5VL_AttrDef_t *input, else // return adios2_define_attribute_array(io, fullPath, attrType, // &(input->m_Data), shape[0]); - return adios2_define_attribute_array(io, fullPath, attrType, - (input->m_Data), shape[0]); + return adios2_define_attribute_array(io, fullPath, attrType, (input->m_Data), shape[0]); } } @@ -1116,8 +1080,7 @@ hid_t H5VL_adios_register(void) H5VL_ADIOS_g = H5VLregister_connector(&H5VL_adios2_def, H5P_DEFAULT); if (H5VL_ADIOS_g <= 0) { - SHOW_ERROR_MSG( - " [ECP ADIOS VOL ERROR] with H5VLregister_connector\n"); + SHOW_ERROR_MSG(" [ECP ADIOS VOL ERROR] with H5VLregister_connector\n"); return -1; } } diff --git a/source/h5vol/H5VolReadWrite.h b/source/h5vol/H5VolReadWrite.h index 2910ae0d87..92047b751f 100644 --- a/source/h5vol/H5VolReadWrite.h +++ b/source/h5vol/H5VolReadWrite.h @@ -28,13 +28,11 @@ static herr_t H5VL_adios2_term(void) extern herr_t H5VL_adios2_begin_read_step(const char *); extern herr_t H5VL_adios2_begin_write_step(const char *); -extern herr_t H5VL_adios2_beginstep(const char *engine_name, - adios2_step_mode m); +extern herr_t H5VL_adios2_beginstep(const char *engine_name, adios2_step_mode m); extern herr_t H5VL_adios2_endstep(const char *engine_nane); -static herr_t H5VL_adios2_introspect_opt_query(void *obj, H5VL_subclass_t cls, - int opt_type, +static herr_t H5VL_adios2_introspect_opt_query(void *obj, H5VL_subclass_t cls, int opt_type, uint64_t *supported) { *supported = 0; @@ -74,26 +72,25 @@ static const H5VL_class_t H5VL_adios2_def = { NULL, /* unwrap_object */ NULL /* free_wrap_ctx */ }, - {H5VL_adios2_attr_create, H5VL_adios2_attr_open, H5VL_adios2_attr_read, - H5VL_adios2_attr_write, H5VL_adios2_attr_get, H5VL_adios2_attr_specific, + {H5VL_adios2_attr_create, H5VL_adios2_attr_open, H5VL_adios2_attr_read, H5VL_adios2_attr_write, + H5VL_adios2_attr_get, H5VL_adios2_attr_specific, NULL, // H5VL_adios2_attr_optional, H5VL_adios2_attr_close}, { /* dataset_cls */ - H5VL_adios2_dataset_create, H5VL_adios2_dataset_open, - H5VL_adios2_dataset_read, H5VL_adios2_dataset_write, - H5VL_adios2_dataset_get, /* get properties*/ - NULL, // H5VL_adios2_dataset_specific - NULL, // optional - H5VL_adios2_dataset_close /* close */ + H5VL_adios2_dataset_create, H5VL_adios2_dataset_open, H5VL_adios2_dataset_read, + H5VL_adios2_dataset_write, H5VL_adios2_dataset_get, /* get properties*/ + NULL, // H5VL_adios2_dataset_specific + NULL, // optional + H5VL_adios2_dataset_close /* close */ }, { /* datatype_cls */ - NULL, // H5VL_adios2_datatype_commit, /* commit */ - NULL, // H5VL_adios2_datatype_open, /* open */ - NULL, // H5VL_adios2_datatype_get, /* get_size */ - NULL, // H5VL_adios2_datatype_specific, - NULL, // H5VL_adios2_datatype_optional, + NULL, // H5VL_adios2_datatype_commit, /* commit */ + NULL, // H5VL_adios2_datatype_open, /* open */ + NULL, // H5VL_adios2_datatype_get, /* get_size */ + NULL, // H5VL_adios2_datatype_specific, + NULL, // H5VL_adios2_datatype_optional, H5VL_adios2_datatype_close /* close */ }, {H5VL_adios2_file_create, H5VL_adios2_file_open, @@ -101,8 +98,8 @@ static const H5VL_class_t H5VL_adios2_def = { H5VL_adios2_file_specific, NULL, // H5VL_adios2_file_optional, H5VL_adios2_file_close}, - {H5VL_adios2_group_create, H5VL_adios2_group_open, H5VL_adios2_group_get, - NULL, NULL, H5VL_adios2_group_close}, + {H5VL_adios2_group_create, H5VL_adios2_group_open, H5VL_adios2_group_get, NULL, NULL, + H5VL_adios2_group_close}, { NULL, // H5VL_adios2_link_create, NULL, // H5VL_adios2_link_copy, diff --git a/source/h5vol/H5VolUtil.c b/source/h5vol/H5VolUtil.c index 80f463eaaf..b9b11216c6 100644 --- a/source/h5vol/H5VolUtil.c +++ b/source/h5vol/H5VolUtil.c @@ -11,8 +11,8 @@ void *safe_calloc(size_t n, size_t s, unsigned long line) void *p = calloc(n, s); if (!p) { - fprintf(stderr, "[%s:%ld]Out of memory at calloc (%ld, %ld)\n", - __FILE__, line, (unsigned long)n, (unsigned long)s); + fprintf(stderr, "[%s:%ld]Out of memory at calloc (%ld, %ld)\n", __FILE__, line, + (unsigned long)n, (unsigned long)s); exit(EXIT_FAILURE); } return p; @@ -28,8 +28,7 @@ void *safe_malloc(size_t n, unsigned long line) void *p = malloc(n); if (!p) { - fprintf(stderr, "[%s:%ld]Out of memory at malloc (%zu bytes)\n", - __FILE__, line, n); + fprintf(stderr, "[%s:%ld]Out of memory at malloc (%zu bytes)\n", __FILE__, line, n); exit(EXIT_FAILURE); } return p; @@ -49,8 +48,8 @@ void *safe_ralloc(void *ptr, size_t newsize, unsigned long line) void *p = realloc(ptr, newsize); if (!p) { - fprintf(stderr, "[%s:%ld]Out of memory at ralloc to (%ld bytes)\n", - __FILE__, line, (unsigned long)newsize); + fprintf(stderr, "[%s:%ld]Out of memory at ralloc to (%ld bytes)\n", __FILE__, line, + (unsigned long)newsize); exit(EXIT_FAILURE); } return p; @@ -81,8 +80,7 @@ int gUtilADIOS2GetShape(hid_t space_id, size_t *shape, size_t ndims) return H5VL_CODE_SUCC; } -int gUtilADIOS2GetBlockInfo(hid_t hyperSlab_id, size_t *start, size_t *count, - hsize_t ndims) +int gUtilADIOS2GetBlockInfo(hid_t hyperSlab_id, size_t *start, size_t *count, hsize_t ndims) { hsize_t npts = H5Sget_select_npoints(hyperSlab_id); @@ -137,10 +135,7 @@ int gUtilADIOS2IsScalar(hid_t space_id) return H5VL_CODE_FAIL; } -int gUtilADIOS2GetDim(hid_t space_id) -{ - return H5Sget_simple_extent_ndims(space_id); -} +int gUtilADIOS2GetDim(hid_t space_id) { return H5Sget_simple_extent_ndims(space_id); } hid_t gUtilHDF5Type(adios2_type adios2Type) { diff --git a/source/h5vol/H5VolUtil.h b/source/h5vol/H5VolUtil.h index 4797bd36f9..e624a4dbea 100644 --- a/source/h5vol/H5VolUtil.h +++ b/source/h5vol/H5VolUtil.h @@ -41,7 +41,6 @@ void gUtilConvert(hsize_t *fromH5, size_t *to, size_t ndims); int gUtilADIOS2GetShape(hid_t space_id, size_t *shape, size_t ndims); -int gUtilADIOS2GetBlockInfo(hid_t hyperSlab_id, size_t *start, size_t *count, - hsize_t ndims); +int gUtilADIOS2GetBlockInfo(hid_t hyperSlab_id, size_t *start, size_t *count, hsize_t ndims); #endif diff --git a/source/h5vol/H5Vol_attr.c b/source/h5vol/H5Vol_attr.c index 8b7407fde7..17a89cb0d5 100644 --- a/source/h5vol/H5Vol_attr.c +++ b/source/h5vol/H5Vol_attr.c @@ -6,10 +6,9 @@ /// // attribute handlers // -void *H5VL_adios2_attr_create(void *obj, const H5VL_loc_params_t *loc_params, - const char *name, hid_t type_id, hid_t space_id, - hid_t acpl_id, hid_t aapl_id, hid_t dxpl_id, - void **req) +void *H5VL_adios2_attr_create(void *obj, const H5VL_loc_params_t *loc_params, const char *name, + hid_t type_id, hid_t space_id, hid_t acpl_id, hid_t aapl_id, + hid_t dxpl_id, void **req) { REQUIRE_NOT_NULL_ERR(loc_params, NULL); REQUIRE_NOT_NULL_ERR(obj, NULL); @@ -20,9 +19,8 @@ void *H5VL_adios2_attr_create(void *obj, const H5VL_loc_params_t *loc_params, return gAttrToVolObj(attrDef, vol); } -void *H5VL_adios2_attr_open(void *obj, const H5VL_loc_params_t *loc_params, - const char *name, hid_t aapl_id, hid_t dxpl_id, - void **req) +void *H5VL_adios2_attr_open(void *obj, const H5VL_loc_params_t *loc_params, const char *name, + hid_t aapl_id, hid_t dxpl_id, void **req) { REQUIRE_NOT_NULL_ERR(loc_params, NULL); REQUIRE_NOT_NULL_ERR(obj, NULL); @@ -35,8 +33,7 @@ void *H5VL_adios2_attr_open(void *obj, const H5VL_loc_params_t *loc_params, { if ('/' == name[0]) { - SHOW_ERROR_MSG( - "H5VL_ADIOS2: Error: No such ATTRIBUTE: [%s] in file\n ", name); + SHOW_ERROR_MSG("H5VL_ADIOS2: Error: No such ATTRIBUTE: [%s] in file\n ", name); return NULL; } else @@ -66,8 +63,7 @@ void *H5VL_adios2_attr_open(void *obj, const H5VL_loc_params_t *loc_params, return gAttrToVolObj(attrDef, vol); } -herr_t H5VL_adios2_attr_read(void *attrObj, hid_t mem_type_id, void *buf, - hid_t dxpl_id, void **req) +herr_t H5VL_adios2_attr_read(void *attrObj, hid_t mem_type_id, void *buf, hid_t dxpl_id, void **req) { REQUIRE_NOT_NULL_ERR(attrObj, -1); @@ -87,8 +83,7 @@ herr_t H5VL_adios2_attr_read(void *attrObj, hid_t mem_type_id, void *buf, size_t strSize = H5Tget_size(mem_type_id); // buf is char* instead of char**, adios2 c api expects char** - char **result = - (char **)(malloc(sizeof(char *) * (int)(attrDef->m_Size))); + char **result = (char **)(malloc(sizeof(char *) * (int)(attrDef->m_Size))); size_t k = 0; for (k = 0; k < attrDef->m_Size; k++) result[k] = (char *)(malloc(strSize)); @@ -120,8 +115,8 @@ herr_t H5VL_adios2_attr_read(void *attrObj, hid_t mem_type_id, void *buf, return 0; } -herr_t H5VL_adios2_attr_write(void *attr, hid_t mem_type_id, const void *buf, - hid_t dxpl_id, void **req) +herr_t H5VL_adios2_attr_write(void *attr, hid_t mem_type_id, const void *buf, hid_t dxpl_id, + void **req) { REQUIRE_NOT_NULL_ERR(attr, -1); H5VL_ObjDef_t *vol = (H5VL_ObjDef_t *)attr; @@ -152,8 +147,7 @@ void GetFromAttribute(void *attrObj, hid_t *ret_id, H5VL_attr_get_t get_type) } } -herr_t H5VL_adios2_attr_get(void *obj, H5VL_attr_get_args_t *args, - hid_t dxpl_id, void **req) +herr_t H5VL_adios2_attr_get(void *obj, H5VL_attr_get_args_t *args, hid_t dxpl_id, void **req) { REQUIRE_NOT_NULL_ERR(obj, -1); H5VL_ObjDef_t *vol = (H5VL_ObjDef_t *)obj; @@ -196,8 +190,7 @@ herr_t H5VL_adios2_attr_get(void *obj, H5VL_attr_get_args_t *args, { // The number of attrs is from H5Oget_info(), then iterate each by // calling H5Aget_name_by_idx, to reach here - *ret_val = - gGetNameOfNthAttr(vol, loc_params->loc_data.loc_by_idx.n, buf); + *ret_val = gGetNameOfNthAttr(vol, loc_params->loc_data.loc_by_idx.n, buf); } return 0; } @@ -227,8 +220,7 @@ herr_t H5VL_adios2_attr_close(void *attr, hid_t dxpl_id, void **req) } herr_t H5VL_adios2_attr_specific(void *obj, const H5VL_loc_params_t *loc_params, - H5VL_attr_specific_args_t *args, hid_t dxpl_id, - void **req) + H5VL_attr_specific_args_t *args, hid_t dxpl_id, void **req) { REQUIRE_NOT_NULL_ERR(obj, -1); H5VL_ObjDef_t *vol = (H5VL_ObjDef_t *)obj; diff --git a/source/h5vol/H5Vol_dataset.c b/source/h5vol/H5Vol_dataset.c index 35da630b57..dda5a11dce 100644 --- a/source/h5vol/H5Vol_dataset.c +++ b/source/h5vol/H5Vol_dataset.c @@ -3,10 +3,9 @@ #include "H5Vol_def.h" -void *H5VL_adios2_dataset_create(void *obj, const H5VL_loc_params_t *loc_params, - const char *name, hid_t lcpl_id, hid_t type_id, - hid_t space_id, hid_t dcpl_id, hid_t dapl_id, - hid_t dxpl_id, void **req) +void *H5VL_adios2_dataset_create(void *obj, const H5VL_loc_params_t *loc_params, const char *name, + hid_t lcpl_id, hid_t type_id, hid_t space_id, hid_t dcpl_id, + hid_t dapl_id, hid_t dxpl_id, void **req) { REQUIRE_NOT_NULL_ERR(loc_params, NULL); REQUIRE_NOT_NULL_ERR(obj, NULL); @@ -17,8 +16,7 @@ void *H5VL_adios2_dataset_create(void *obj, const H5VL_loc_params_t *loc_params, { REQUIRE_SUCC((ROOT == vol->m_ObjType), NULL); H5VL_FileDef_t *handle = (H5VL_FileDef_t *)(vol->m_ObjPtr); - H5VL_VarDef_t *varDef = - gCreateVarDef(name, handle->m_Engine, NULL, space_id, type_id); + H5VL_VarDef_t *varDef = gCreateVarDef(name, handle->m_Engine, NULL, space_id, type_id); gADIOS2DefineVar(vol->m_FileIO, varDef); return gVarToVolObj(varDef, vol); } @@ -42,9 +40,9 @@ void *H5VL_adios2_dataset_create(void *obj, const H5VL_loc_params_t *loc_params, { if (curr->m_Parent == NULL) { - H5VL_VarDef_t *varDef = gCreateVarDef( - fullPath, ((H5VL_FileDef_t *)(curr->m_ObjPtr))->m_Engine, - NULL, space_id, type_id); + H5VL_VarDef_t *varDef = + gCreateVarDef(fullPath, ((H5VL_FileDef_t *)(curr->m_ObjPtr))->m_Engine, NULL, + space_id, type_id); gADIOS2DefineVar(vol->m_FileIO, varDef); return gVarToVolObj(varDef, vol); } @@ -57,9 +55,8 @@ void *H5VL_adios2_dataset_create(void *obj, const H5VL_loc_params_t *loc_params, return NULL; } -void *H5VL_adios2_dataset_open(void *obj, const H5VL_loc_params_t *loc_params, - const char *name, hid_t dapl_id, hid_t dxpl_id, - void **req) +void *H5VL_adios2_dataset_open(void *obj, const H5VL_loc_params_t *loc_params, const char *name, + hid_t dapl_id, hid_t dxpl_id, void **req) { REQUIRE_NOT_NULL_ERR(loc_params, NULL); REQUIRE_NOT_NULL_ERR(obj, NULL); @@ -80,16 +77,13 @@ void *H5VL_adios2_dataset_open(void *obj, const H5VL_loc_params_t *loc_params, H5VL_ObjDef_t *result = gGetVarObjDef(name, vol); if (NULL == result) - SHOW_ERROR_MSG("H5VL_ADIOS2: Error: No such variable: %s in file.\n ", - name); + SHOW_ERROR_MSG("H5VL_ADIOS2: Error: No such variable: %s in file.\n ", name); return result; } -herr_t H5VL_adios2_dataset_read(size_t count, void *dset_array[], - hid_t mem_type_id_array[], - hid_t mem_space_id_array[], - hid_t file_space_id_array[], hid_t dxpl_id, - void *buf_array[], +herr_t H5VL_adios2_dataset_read(size_t count, void *dset_array[], hid_t mem_type_id_array[], + hid_t mem_space_id_array[], hid_t file_space_id_array[], + hid_t dxpl_id, void *buf_array[], void **req) // last parameter is unused as in h5 { herr_t returnValue = 0; @@ -110,8 +104,7 @@ herr_t H5VL_adios2_dataset_read(size_t count, void *dset_array[], return returnValue; } -herr_t H5VL_adios2_dataset_get(void *dset, H5VL_dataset_get_args_t *args, - hid_t dxpl_id, void **req) +herr_t H5VL_adios2_dataset_get(void *dset, H5VL_dataset_get_args_t *args, hid_t dxpl_id, void **req) { REQUIRE_NOT_NULL_ERR(dset, -1); H5VL_ObjDef_t *vol = (H5VL_ObjDef_t *)dset; @@ -120,8 +113,7 @@ herr_t H5VL_adios2_dataset_get(void *dset, H5VL_dataset_get_args_t *args, switch (args->op_type) { case H5VL_DATASET_GET_SPACE: { - REQUIRE_SUCC_MSG((varDef->m_ShapeID >= 0), -1, - "H5VOL-ADIOS2: Unable to get space id."); + REQUIRE_SUCC_MSG((varDef->m_ShapeID >= 0), -1, "H5VOL-ADIOS2: Unable to get space id."); args->args.get_space.space_id = H5Scopy(varDef->m_ShapeID); break; } @@ -136,11 +128,9 @@ herr_t H5VL_adios2_dataset_get(void *dset, H5VL_dataset_get_args_t *args, return 0; } -herr_t H5VL_adios2_dataset_write(size_t count, void *dset_array[], - hid_t mem_type_id_array[], - hid_t mem_space_id_array[], - hid_t file_space_id_array[], hid_t dxpl_id, - const void *buf_array[], void **req) +herr_t H5VL_adios2_dataset_write(size_t count, void *dset_array[], hid_t mem_type_id_array[], + hid_t mem_space_id_array[], hid_t file_space_id_array[], + hid_t dxpl_id, const void *buf_array[], void **req) { for (size_t i = 0; i < count; i++) { diff --git a/source/h5vol/H5Vol_def.h b/source/h5vol/H5Vol_def.h index 72e789a0cb..21b1c226ed 100644 --- a/source/h5vol/H5Vol_def.h +++ b/source/h5vol/H5Vol_def.h @@ -95,91 +95,70 @@ extern "C" { // // file functions // -extern void *H5VL_adios2_file_create(const char *name, unsigned flags, - hid_t fcpl_id, hid_t fapl_id, +extern void *H5VL_adios2_file_create(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id, hid_t dxpl_id, void **req); -extern void *H5VL_adios2_file_open(const char *name, unsigned flags, - hid_t fapl_id, hid_t dxpl_id, void **req); +extern void *H5VL_adios2_file_open(const char *name, unsigned flags, hid_t fapl_id, hid_t dxpl_id, + void **req); -extern herr_t H5VL_adios2_file_specific(void *file, - H5VL_file_specific_args_t *args, - hid_t dxpl_id, void **req); +extern herr_t H5VL_adios2_file_specific(void *file, H5VL_file_specific_args_t *args, hid_t dxpl_id, + void **req); extern herr_t H5VL_adios2_file_close(void *file, hid_t dxpl_id, void **req); // // attr functions // -extern void *H5VL_adios2_attr_create(void *obj, - const H5VL_loc_params_t *loc_params, - const char *name, hid_t type_id, - hid_t space_id, hid_t acpl_id, +extern void *H5VL_adios2_attr_create(void *obj, const H5VL_loc_params_t *loc_params, + const char *name, hid_t type_id, hid_t space_id, hid_t acpl_id, hid_t aapl_id, hid_t dxpl_id, void **req); -extern void *H5VL_adios2_attr_open(void *obj, - const H5VL_loc_params_t *loc_params, - const char *name, hid_t aapl_id, - hid_t dxpl_id, void **req); +extern void *H5VL_adios2_attr_open(void *obj, const H5VL_loc_params_t *loc_params, const char *name, + hid_t aapl_id, hid_t dxpl_id, void **req); -extern herr_t H5VL_adios2_attr_read(void *attrObj, hid_t mem_type_id, void *buf, - hid_t dxpl_id, void **req); +extern herr_t H5VL_adios2_attr_read(void *attrObj, hid_t mem_type_id, void *buf, hid_t dxpl_id, + void **req); -extern herr_t H5VL_adios2_attr_write(void *attr, hid_t mem_type_id, - const void *buf, hid_t dxpl_id, +extern herr_t H5VL_adios2_attr_write(void *attr, hid_t mem_type_id, const void *buf, hid_t dxpl_id, void **req); -extern herr_t H5VL_adios2_attr_get(void *obj, H5VL_attr_get_args_t *args, - hid_t dxpl_id, void **req); +extern herr_t H5VL_adios2_attr_get(void *obj, H5VL_attr_get_args_t *args, hid_t dxpl_id, + void **req); extern herr_t H5VL_adios2_attr_close(void *attr, hid_t dxpl_id, void **req); -extern herr_t H5VL_adios2_attr_specific(void *obj, - const H5VL_loc_params_t *loc_params, - H5VL_attr_specific_args_t *args, - hid_t dxpl_id, void **req); +extern herr_t H5VL_adios2_attr_specific(void *obj, const H5VL_loc_params_t *loc_params, + H5VL_attr_specific_args_t *args, hid_t dxpl_id, void **req); // // object functions: // -extern void *H5VL_adios2_object_open(void *obj, - const H5VL_loc_params_t *loc_params, - H5I_type_t *opened_type, - hid_t H5_ATTR_UNUSED dxpl_id, +extern void *H5VL_adios2_object_open(void *obj, const H5VL_loc_params_t *loc_params, + H5I_type_t *opened_type, hid_t H5_ATTR_UNUSED dxpl_id, void H5_ATTR_UNUSED **req); -extern herr_t H5VL_adios2_object_get(void *obj, - const H5VL_loc_params_t *loc_params, - H5VL_object_get_args_t *args, - hid_t H5_ATTR_UNUSED dxpl_id, +extern herr_t H5VL_adios2_object_get(void *obj, const H5VL_loc_params_t *loc_params, + H5VL_object_get_args_t *args, hid_t H5_ATTR_UNUSED dxpl_id, void H5_ATTR_UNUSED **req); // dataset functions: -extern void *H5VL_adios2_dataset_create(void *obj, - const H5VL_loc_params_t *loc_params, - const char *name, hid_t lcpl_id, - hid_t type_id, hid_t space_id, - hid_t dcpl_id, hid_t dapl_id, - hid_t dxpl_id, void **req); - -extern void *H5VL_adios2_dataset_open(void *obj, - const H5VL_loc_params_t *loc_params, - const char *name, hid_t dapl_id, - hid_t dxpl_id, void **req); +extern void *H5VL_adios2_dataset_create(void *obj, const H5VL_loc_params_t *loc_params, + const char *name, hid_t lcpl_id, hid_t type_id, + hid_t space_id, hid_t dcpl_id, hid_t dapl_id, hid_t dxpl_id, + void **req); + +extern void *H5VL_adios2_dataset_open(void *obj, const H5VL_loc_params_t *loc_params, + const char *name, hid_t dapl_id, hid_t dxpl_id, void **req); -extern herr_t H5VL_adios2_dataset_read(size_t count, void *dset[], - hid_t mem_type_id[], - hid_t mem_space_id[], - hid_t file_space_id[], hid_t dxpl_id, +extern herr_t H5VL_adios2_dataset_read(size_t count, void *dset[], hid_t mem_type_id[], + hid_t mem_space_id[], hid_t file_space_id[], hid_t dxpl_id, void *buf[], void **req); -extern herr_t H5VL_adios2_dataset_get(void *dset, H5VL_dataset_get_args_t *args, - hid_t dxpl_id, void **req); +extern herr_t H5VL_adios2_dataset_get(void *dset, H5VL_dataset_get_args_t *args, hid_t dxpl_id, + void **req); -extern herr_t H5VL_adios2_dataset_write(size_t count, void *dset[], - hid_t mem_type_id[], - hid_t mem_space_id[], - hid_t file_space_id[], hid_t dxpl_id, +extern herr_t H5VL_adios2_dataset_write(size_t count, void *dset[], hid_t mem_type_id[], + hid_t mem_space_id[], hid_t file_space_id[], hid_t dxpl_id, const void *buf[], void **req); extern herr_t H5VL_adios2_dataset_close(void *dset, hid_t dxpl_id, void **req); @@ -187,37 +166,28 @@ extern herr_t H5VL_adios2_dataset_close(void *dset, hid_t dxpl_id, void **req); // // link functions: // -extern herr_t H5VL_adios2_link_specific(void *obj, - const H5VL_loc_params_t *loc_params, +extern herr_t H5VL_adios2_link_specific(void *obj, const H5VL_loc_params_t *loc_params, H5VL_link_specific_args_t *args, - hid_t H5_ATTR_UNUSED dxpl_id, - void H5_ATTR_UNUSED **req); + hid_t H5_ATTR_UNUSED dxpl_id, void H5_ATTR_UNUSED **req); -extern herr_t H5VL_adios2_link_get(void *obj, - const H5VL_loc_params_t *loc_params, - H5VL_link_get_args_t *args, - hid_t H5_ATTR_UNUSED dxpl_id, +extern herr_t H5VL_adios2_link_get(void *obj, const H5VL_loc_params_t *loc_params, + H5VL_link_get_args_t *args, hid_t H5_ATTR_UNUSED dxpl_id, void H5_ATTR_UNUSED **req); // // group functions: // -extern void *H5VL_adios2_group_create(void *obj, - const H5VL_loc_params_t *loc_params, - const char *name, hid_t lcpl_id, - hid_t gcpl_id, hid_t gapl_id, +extern void *H5VL_adios2_group_create(void *obj, const H5VL_loc_params_t *loc_params, + const char *name, hid_t lcpl_id, hid_t gcpl_id, hid_t gapl_id, hid_t dxpl_id, void **req); extern herr_t H5VL_adios2_group_close(void *obj, hid_t dxpl_id, void **req); -extern void *H5VL_adios2_group_open(void *obj, - const H5VL_loc_params_t *loc_params, - const char *name, hid_t gapl_id, - hid_t dxpl_id, void **req); +extern void *H5VL_adios2_group_open(void *obj, const H5VL_loc_params_t *loc_params, + const char *name, hid_t gapl_id, hid_t dxpl_id, void **req); extern herr_t H5VL_adios2_group_get(void *obj, H5VL_group_get_args_t *args, - hid_t H5_ATTR_UNUSED dxpl_id, - void H5_ATTR_UNUSED **req); + hid_t H5_ATTR_UNUSED dxpl_id, void H5_ATTR_UNUSED **req); // // general definitions: @@ -232,8 +202,7 @@ extern void *gVarToVolObj(H5VL_VarDef_t *var, H5VL_ObjDef_t *parent); extern void gFreeVol(H5VL_ObjDef_t *vol); -extern adios2_attribute *gLocateAttrFrom(H5VL_ObjDef_t *owner, - const char *name); +extern adios2_attribute *gLocateAttrFrom(H5VL_ObjDef_t *owner, const char *name); extern htri_t gExistsUnderGrp(H5VL_ObjDef_t *owner, const char *obj_name); extern bool gRemoveUnderGrp(H5VL_ObjDef_t *owner, const char *obj_name); @@ -245,16 +214,13 @@ extern size_t gGetNameOfNthAttr(H5VL_ObjDef_t *obj, uint32_t idx, char *name); extern size_t gGetNameOfNthItem(H5VL_ObjDef_t *obj, uint32_t idx, char *name); extern H5VL_ObjDef_t *gGetVarObjDef(const char *fullPath, H5VL_ObjDef_t *vol); -extern H5VL_VarDef_t *gCreateVarDef(const char *name, adios2_engine *engine, - adios2_variable *var, hid_t space_id, - hid_t type_id); +extern H5VL_VarDef_t *gCreateVarDef(const char *name, adios2_engine *engine, adios2_variable *var, + hid_t space_id, hid_t type_id); -extern H5VL_AttrDef_t *gCreateAttrDef(const char *name, hid_t type_id, - hid_t space_id); +extern H5VL_AttrDef_t *gCreateAttrDef(const char *name, hid_t type_id, hid_t space_id); extern H5VL_GroupDef_t *gCreateGroupDef(const char *name); -extern void gGenerateFullPath(char *fullPath, const char *parentPath, - const char *name); +extern void gGenerateFullPath(char *fullPath, const char *parentPath, const char *name); /* */ diff --git a/source/h5vol/H5Vol_file.c b/source/h5vol/H5Vol_file.c index d7ad4fc72d..fb2c2d899b 100644 --- a/source/h5vol/H5Vol_file.c +++ b/source/h5vol/H5Vol_file.c @@ -4,8 +4,8 @@ // NOTE: this is called from H5F.c when a new file or trunc file is asked // so no need to check flags here. if do need to, use & not == // -void *H5VL_adios2_file_create(const char *name, unsigned flags, hid_t fcpl_id, - hid_t fapl_id, hid_t dxpl_id, void **req) +void *H5VL_adios2_file_create(const char *name, unsigned flags, hid_t fcpl_id, hid_t fapl_id, + hid_t dxpl_id, void **req) { gInitADIOS2(fapl_id); if (flags & H5F_ACC_TRUNC) @@ -31,16 +31,16 @@ void *H5VL_adios2_file_create(const char *name, unsigned flags, hid_t fcpl_id, return NULL; } -void *H5VL_adios2_file_open(const char *name, unsigned flags, hid_t fapl_id, - hid_t dxpl_id, void **req) +void *H5VL_adios2_file_open(const char *name, unsigned flags, hid_t fapl_id, hid_t dxpl_id, + void **req) { gInitADIOS2(fapl_id); H5VL_FileDef_t *handle = gADIOS2OpenFile(name); return gFileToVolObj(handle); } -herr_t H5VL_adios2_file_specific(void *file, H5VL_file_specific_args_t *args, - hid_t dxpl_id, void **req) +herr_t H5VL_adios2_file_specific(void *file, H5VL_file_specific_args_t *args, hid_t dxpl_id, + void **req) { // // This function is called after H5Fopen/create. Do not remove diff --git a/source/h5vol/H5Vol_group.c b/source/h5vol/H5Vol_group.c index 6a1089723c..5b3a331b5c 100644 --- a/source/h5vol/H5Vol_group.c +++ b/source/h5vol/H5Vol_group.c @@ -3,17 +3,16 @@ #include "H5Vol_def.h" -void *H5VL_adios2_group_create(void *obj, const H5VL_loc_params_t *loc_params, - const char *name, hid_t lcpl_id, hid_t gcpl_id, - hid_t gapl_id, hid_t dxpl_id, void **req) +void *H5VL_adios2_group_create(void *obj, const H5VL_loc_params_t *loc_params, const char *name, + hid_t lcpl_id, hid_t gcpl_id, hid_t gapl_id, hid_t dxpl_id, + void **req) { REQUIRE_NOT_NULL_ERR(obj, NULL); H5VL_ObjDef_t *vol = (H5VL_ObjDef_t *)obj; // NOTE: flaky here as I do not check whether this group was create before. // good faith on users - if ((H5I_GROUP == loc_params->obj_type) || - (H5I_FILE == loc_params->obj_type)) + if ((H5I_GROUP == loc_params->obj_type) || (H5I_FILE == loc_params->obj_type)) { H5VL_GroupDef_t *grp = gCreateGroupDef(name); return gGroupToVolObj(grp, vol); @@ -36,17 +35,15 @@ herr_t H5VL_adios2_group_close(void *obj, hid_t dxpl_id, void **req) return 0; } -void *H5VL_adios2_group_open(void *obj, const H5VL_loc_params_t *loc_params, - const char *name, hid_t gapl_id, hid_t dxpl_id, - void **req) +void *H5VL_adios2_group_open(void *obj, const H5VL_loc_params_t *loc_params, const char *name, + hid_t gapl_id, hid_t dxpl_id, void **req) { REQUIRE_NOT_NULL_ERR(obj, NULL); REQUIRE_NOT_NULL_ERR(loc_params, NULL); H5VL_ObjDef_t *vol = (H5VL_ObjDef_t *)obj; - if ((H5I_GROUP == loc_params->obj_type) | - (H5I_FILE == loc_params->obj_type)) + if ((H5I_GROUP == loc_params->obj_type) | (H5I_FILE == loc_params->obj_type)) { H5VL_GroupDef_t *grp = gCreateGroupDef(name); return gGroupToVolObj(grp, vol); @@ -55,8 +52,7 @@ void *H5VL_adios2_group_open(void *obj, const H5VL_loc_params_t *loc_params, return NULL; } -herr_t H5VL_adios2_group_get(void *obj, H5VL_group_get_args_t *args, - hid_t H5_ATTR_UNUSED dxpl_id, +herr_t H5VL_adios2_group_get(void *obj, H5VL_group_get_args_t *args, hid_t H5_ATTR_UNUSED dxpl_id, void H5_ATTR_UNUSED **req) { REQUIRE_NOT_NULL_ERR(obj, -1); diff --git a/source/h5vol/H5Vol_link.c b/source/h5vol/H5Vol_link.c index fdf4b832e7..522c5588cb 100644 --- a/source/h5vol/H5Vol_link.c +++ b/source/h5vol/H5Vol_link.c @@ -4,8 +4,7 @@ #include "H5Vol_def.h" herr_t H5VL_adios2_link_specific(void *obj, const H5VL_loc_params_t *loc_params, - H5VL_link_specific_args_t *args, - hid_t H5_ATTR_UNUSED dxpl_id, + H5VL_link_specific_args_t *args, hid_t H5_ATTR_UNUSED dxpl_id, void H5_ATTR_UNUSED **req) { @@ -28,8 +27,7 @@ herr_t H5VL_adios2_link_specific(void *obj, const H5VL_loc_params_t *loc_params, } case H5VL_LINK_DELETE: { - ADIOS_VOL_WARN( - "link does not have effect if already written in file ..\n"); + ADIOS_VOL_WARN("link does not have effect if already written in file ..\n"); if ((GROUP == vol->m_ObjType) || (ROOT == vol->m_ObjType)) { @@ -50,8 +48,7 @@ herr_t H5VL_adios2_link_specific(void *obj, const H5VL_loc_params_t *loc_params, } herr_t H5VL_adios2_link_get(void *obj, const H5VL_loc_params_t *loc_params, - H5VL_link_get_args_t *args, - hid_t H5_ATTR_UNUSED dxpl_id, + H5VL_link_get_args_t *args, hid_t H5_ATTR_UNUSED dxpl_id, void H5_ATTR_UNUSED **req) { @@ -68,8 +65,7 @@ herr_t H5VL_adios2_link_get(void *obj, const H5VL_loc_params_t *loc_params, if ((GROUP == vol->m_ObjType) || (ROOT == vol->m_ObjType)) { // so idx makes sense - *ret = - gGetNameOfNthItem(vol, loc_params->loc_data.loc_by_idx.n, name); + *ret = gGetNameOfNthItem(vol, loc_params->loc_data.loc_by_idx.n, name); return 0; } break; diff --git a/source/h5vol/H5Vol_object.c b/source/h5vol/H5Vol_object.c index 0b2ce0b74e..8e368ebecb 100644 --- a/source/h5vol/H5Vol_object.c +++ b/source/h5vol/H5Vol_object.c @@ -4,8 +4,7 @@ #include "H5Vol_def.h" void *H5VL_adios2_object_open(void *obj, const H5VL_loc_params_t *loc_params, - H5I_type_t *opened_type, - hid_t H5_ATTR_UNUSED dxpl_id, + H5I_type_t *opened_type, hid_t H5_ATTR_UNUSED dxpl_id, void H5_ATTR_UNUSED **req) { REQUIRE_NOT_NULL_ERR(loc_params, NULL); @@ -56,8 +55,7 @@ void *H5VL_adios2_object_open(void *obj, const H5VL_loc_params_t *loc_params, } herr_t H5VL_adios2_object_get(void *obj, const H5VL_loc_params_t *loc_params, - H5VL_object_get_args_t *args, - hid_t H5_ATTR_UNUSED dxpl_id, + H5VL_object_get_args_t *args, hid_t H5_ATTR_UNUSED dxpl_id, void H5_ATTR_UNUSED **req) { REQUIRE_NOT_NULL_ERR(loc_params, -1); diff --git a/source/utils/Utils.h b/source/utils/Utils.h index 4879763e0f..41d91e1ee2 100644 --- a/source/utils/Utils.h +++ b/source/utils/Utils.h @@ -38,8 +38,7 @@ class Utils virtual void ProcessParameters() = 0; virtual void PrintUsage() const noexcept = 0; virtual void PrintExamples() const noexcept = 0; - virtual void SetParameters(const std::string argument, - const bool isLong) = 0; + virtual void SetParameters(const std::string argument, const bool isLong) = 0; }; } /// end namespace adios2 diff --git a/source/utils/adios_iotest/adiosStream.cpp b/source/utils/adios_iotest/adiosStream.cpp index 281c726aad..948fe9a2b2 100644 --- a/source/utils/adios_iotest/adiosStream.cpp +++ b/source/utils/adios_iotest/adiosStream.cpp @@ -16,9 +16,8 @@ #include #include -adiosStream::adiosStream(const std::string &streamName, adios2::IO &io, - const adios2::Mode mode, MPI_Comm comm, bool iotimer, - size_t appid) +adiosStream::adiosStream(const std::string &streamName, adios2::IO &io, const adios2::Mode mode, + MPI_Comm comm, bool iotimer, size_t appid) : Stream(streamName, mode), io(io), comm(comm) { int myRank, totalRanks; @@ -48,23 +47,20 @@ adiosStream::adiosStream(const std::string &streamName, adios2::IO &io, std::vector opentime_all_ranks; if (myRank == 0) { - std::string logfilename = - "app" + std::to_string(appID) + "_perf.csv"; + std::string logfilename = "app" + std::to_string(appID) + "_perf.csv"; perfLogFP = fopen(logfilename.c_str(), "w"); fputs("step,rank,operation,time\n", perfLogFP); std::cout << "performance log file open succeeded!" << std::endl; opentime_all_ranks.reserve(totalRanks); } - MPI_Gather(&openTime, 1, MPI_DOUBLE, opentime_all_ranks.data(), 1, - MPI_DOUBLE, 0, comm); + MPI_Gather(&openTime, 1, MPI_DOUBLE, opentime_all_ranks.data(), 1, MPI_DOUBLE, 0, comm); if (myRank == 0) { for (int i = 0; i < totalRanks; i++) { - std::string content = std::to_string(engine.CurrentStep()) + - "," + std::to_string(i) + ",open," + - std::to_string(opentime_all_ranks[i]) + - "\n"; + std::string content = std::to_string(engine.CurrentStep()) + "," + + std::to_string(i) + ",open," + + std::to_string(opentime_all_ranks[i]) + "\n"; // std::cout << content; fputs(content.c_str(), perfLogFP); } @@ -91,21 +87,21 @@ void adiosStream::defineADIOSArray(const std::shared_ptr ov) { if (ov->type == "double") { - adios2::Variable v = io.DefineVariable( - ov->name, ov->shape, ov->start, ov->count, true); + adios2::Variable v = + io.DefineVariable(ov->name, ov->shape, ov->start, ov->count, true); (void)v; // v = io->InquireVariable(ov->name); } else if (ov->type == "float") { - adios2::Variable v = io.DefineVariable( - ov->name, ov->shape, ov->start, ov->count, true); + adios2::Variable v = + io.DefineVariable(ov->name, ov->shape, ov->start, ov->count, true); (void)v; } else if (ov->type == "int") { - adios2::Variable v = io.DefineVariable( - ov->name, ov->shape, ov->start, ov->count, true); + adios2::Variable v = + io.DefineVariable(ov->name, ov->shape, ov->start, ov->count, true); (void)v; } } @@ -178,14 +174,13 @@ void adiosStream::getADIOSArray(std::shared_ptr ov) } /* return true if read-in completed */ -adios2::StepStatus adiosStream::readADIOS(CommandRead *cmdR, Config &cfg, - const Settings &settings, size_t step) +adios2::StepStatus adiosStream::readADIOS(CommandRead *cmdR, Config &cfg, const Settings &settings, + size_t step) { if (!settings.myRank && settings.verbose) { - std::cout << " Read " << cmdR->streamName << " with timeout value " - << cmdR->timeout_sec << " using the group " - << cmdR->groupName; + std::cout << " Read " << cmdR->streamName << " with timeout value " << cmdR->timeout_sec + << " using the group " << cmdR->groupName; if (!cmdR->variables.empty()) { std::cout << " with selected variables: "; @@ -201,8 +196,7 @@ adios2::StepStatus adiosStream::readADIOS(CommandRead *cmdR, Config &cfg, // double maxReadTime, minReadTime; MPI_Barrier(comm); timeStart = MPI_Wtime(); - adios2::StepStatus status = - engine.BeginStep(cmdR->stepMode, cmdR->timeout_sec); + adios2::StepStatus status = engine.BeginStep(cmdR->stepMode, cmdR->timeout_sec); if (status != adios2::StepStatus::OK) { return status; @@ -232,10 +226,9 @@ adios2::StepStatus adiosStream::readADIOS(CommandRead *cmdR, Config &cfg, { if (!settings.myRank && settings.verbose) { - std::cout - << " Lock Reader Selections for Fixed Pattern before " - "first EndStep" - << std::endl; + std::cout << " Lock Reader Selections for Fixed Pattern before " + "first EndStep" + << std::endl; } engine.LockWriterDefinitions(); } @@ -266,16 +259,14 @@ adios2::StepStatus adiosStream::readADIOS(CommandRead *cmdR, Config &cfg, readtime_all_ranks.reserve(totalRanks); } - MPI_Gather(&readTime, 1, MPI_DOUBLE, readtime_all_ranks.data(), 1, - MPI_DOUBLE, 0, comm); + MPI_Gather(&readTime, 1, MPI_DOUBLE, readtime_all_ranks.data(), 1, MPI_DOUBLE, 0, comm); if (myRank == 0) { for (int i = 0; i < totalRanks; i++) { - std::string content = std::to_string(engine.CurrentStep()) + - "," + std::to_string(i) + ",read," + - std::to_string(readtime_all_ranks[i]) + - "\n"; + std::string content = std::to_string(engine.CurrentStep()) + "," + + std::to_string(i) + ",read," + + std::to_string(readtime_all_ranks[i]) + "\n"; // std::cout << content; fputs(content.c_str(), perfLogFP); } @@ -299,13 +290,11 @@ adios2::StepStatus adiosStream::readADIOS(CommandRead *cmdR, Config &cfg, return status; } -void adiosStream::writeADIOS(CommandWrite *cmdW, Config &cfg, - const Settings &settings, size_t step) +void adiosStream::writeADIOS(CommandWrite *cmdW, Config &cfg, const Settings &settings, size_t step) { if (!settings.myRank && settings.verbose) { - std::cout << " Write to output " << cmdW->streamName << " the group " - << cmdW->groupName; + std::cout << " Write to output " << cmdW->streamName << " the group " << cmdW->groupName; if (!cmdW->variables.empty()) { std::cout << " with selected variables: "; @@ -319,8 +308,7 @@ void adiosStream::writeADIOS(CommandWrite *cmdW, Config &cfg, size_t s = (cfg.nSteps > 0 ? cfg.nSteps : 1000); const double div = pow(10.0, static_cast(settings.ndigits(s - 1))); - double myValue = static_cast(settings.myRank) + - static_cast(step - 1) / div; + double myValue = static_cast(settings.myRank) + static_cast(step - 1) / div; std::map definedVars = io.AvailableVariables(); for (auto ov : cmdW->variables) @@ -338,8 +326,7 @@ void adiosStream::writeADIOS(CommandWrite *cmdW, Config &cfg, { if (!settings.myRank && settings.verbose) { - std::cout << " Define array " << ov->name - << " for output" << std::endl; + std::cout << " Define array " << ov->name << " for output" << std::endl; } defineADIOSArray(ov); } @@ -350,8 +337,7 @@ void adiosStream::writeADIOS(CommandWrite *cmdW, Config &cfg, { if (!settings.myRank && settings.verbose) { - std::cout << " Fill array " << ov->name - << " for output" << std::endl; + std::cout << " Fill array " << ov->name << " for output" << std::endl; } fillArray(ov, myValue); } @@ -376,10 +362,9 @@ void adiosStream::writeADIOS(CommandWrite *cmdW, Config &cfg, { if (!settings.myRank && settings.verbose) { - std::cout - << " Lock Writer Definitions for Fixed Pattern before " - "first EndStep" - << std::endl; + std::cout << " Lock Writer Definitions for Fixed Pattern before " + "first EndStep" + << std::endl; } engine.LockWriterDefinitions(); } @@ -410,16 +395,14 @@ void adiosStream::writeADIOS(CommandWrite *cmdW, Config &cfg, writetime_all_ranks.reserve(totalRanks); } - MPI_Gather(&writeTime, 1, MPI_DOUBLE, writetime_all_ranks.data(), 1, - MPI_DOUBLE, 0, comm); + MPI_Gather(&writeTime, 1, MPI_DOUBLE, writetime_all_ranks.data(), 1, MPI_DOUBLE, 0, comm); if (myRank == 0) { for (int i = 0; i < totalRanks; i++) { - std::string content = std::to_string(engine.CurrentStep()) + - "," + std::to_string(i) + ",write," + - std::to_string(writetime_all_ranks[i]) + - "\n"; + std::string content = std::to_string(engine.CurrentStep()) + "," + + std::to_string(i) + ",write," + + std::to_string(writetime_all_ranks[i]) + "\n"; // std::cout << content; fputs(content.c_str(), perfLogFP); } @@ -456,15 +439,14 @@ void adiosStream::writeADIOS(CommandWrite *cmdW, Config &cfg, // } } -void adiosStream::Write(CommandWrite *cmdW, Config &cfg, - const Settings &settings, size_t step) +void adiosStream::Write(CommandWrite *cmdW, Config &cfg, const Settings &settings, size_t step) { writeADIOS(cmdW, cfg, settings, step); } -adios2::StepStatus adiosStream::Read(CommandRead *cmdR, Config &cfg, - const Settings &settings, size_t step) +adios2::StepStatus adiosStream::Read(CommandRead *cmdR, Config &cfg, const Settings &settings, + size_t step) { return readADIOS(cmdR, cfg, settings, step); } diff --git a/source/utils/adios_iotest/adiosStream.h b/source/utils/adios_iotest/adiosStream.h index bf9d1f3f74..33e9b743a6 100644 --- a/source/utils/adios_iotest/adiosStream.h +++ b/source/utils/adios_iotest/adiosStream.h @@ -21,14 +21,11 @@ class adiosStream : public Stream bool hasIOTimer; size_t appID; - adiosStream(const std::string &streamName, adios2::IO &io, - const adios2::Mode mode, MPI_Comm comm, bool iotimer, - size_t appid); + adiosStream(const std::string &streamName, adios2::IO &io, const adios2::Mode mode, + MPI_Comm comm, bool iotimer, size_t appid); ~adiosStream(); - void Write(CommandWrite *cmdW, Config &cfg, const Settings &settings, - size_t step); - adios2::StepStatus Read(CommandRead *cmdR, Config &cfg, - const Settings &settings, size_t step); + void Write(CommandWrite *cmdW, Config &cfg, const Settings &settings, size_t step); + adios2::StepStatus Read(CommandRead *cmdR, Config &cfg, const Settings &settings, size_t step); void Close(); private: @@ -38,10 +35,9 @@ class adiosStream : public Stream void defineADIOSArray(const std::shared_ptr ov); void putADIOSArray(const std::shared_ptr ov); void getADIOSArray(std::shared_ptr ov); - adios2::StepStatus readADIOS(CommandRead *cmdR, Config &cfg, - const Settings &settings, size_t step); - void writeADIOS(CommandWrite *cmdW, Config &cfg, const Settings &settings, - size_t step); + adios2::StepStatus readADIOS(CommandRead *cmdR, Config &cfg, const Settings &settings, + size_t step); + void writeADIOS(CommandWrite *cmdW, Config &cfg, const Settings &settings, size_t step); }; #endif /* ADIOSSTREAM_H */ diff --git a/source/utils/adios_iotest/adios_iotest.cpp b/source/utils/adios_iotest/adios_iotest.cpp index 3ec823d163..fd0b942c01 100644 --- a/source/utils/adios_iotest/adios_iotest.cpp +++ b/source/utils/adios_iotest/adios_iotest.cpp @@ -55,8 +55,7 @@ int main(int argc, char *argv[]) { if (!settings.myRank && settings.verbose) { - std::cout << "Use ADIOS xml file " << settings.adiosConfigFileName - << std::endl; + std::cout << "Use ADIOS xml file " << settings.adiosConfigFileName << std::endl; } adios = adios2::ADIOS(settings.adiosConfigFileName, settings.appComm); } @@ -77,9 +76,8 @@ int main(int argc, char *argv[]) } else { - std::cout << "Config file error in line " - << currentConfigLineNumber << ": " << e.what() - << std::endl; + std::cout << "Config file error in line " << currentConfigLineNumber << ": " + << e.what() << std::endl; } } @@ -101,8 +99,7 @@ int main(int argc, char *argv[]) */ if (!settings.myRank && settings.verbose) { - std::cout << "Start App " + std::to_string(settings.appId) + ": " - << std::endl; + std::cout << "Start App " + std::to_string(settings.appId) + ": " << std::endl; } /* 1. Assign stream names with group names that appear in commands */ @@ -116,15 +113,13 @@ int main(int argc, char *argv[]) { auto cmdW = dynamic_cast(cmd.get()); groupMap[cmdW->streamName] = cmdW->groupName; - streamsInOrder.push_back( - std::make_pair(cmdW->streamName, Operation::Write)); + streamsInOrder.push_back(std::make_pair(cmdW->streamName, Operation::Write)); } else if (cmd->op == Operation::Read) { auto cmdR = dynamic_cast(cmd.get()); groupMap[cmdR->streamName] = cmdR->groupName; - streamsInOrder.push_back( - std::make_pair(cmdR->streamName, Operation::Read)); + streamsInOrder.push_back(std::make_pair(cmdR->streamName, Operation::Read)); } } @@ -158,8 +153,8 @@ int main(int argc, char *argv[]) { if (!settings.myRank && settings.verbose) { - std::cout << " Create Output Stream " << streamName - << "... " << std::endl; + std::cout << " Create Output Stream " << streamName << "... " + << std::endl; } if (!settings.outputPath.empty()) { @@ -171,9 +166,9 @@ int main(int argc, char *argv[]) streamName = outputPath + streamName; } - std::shared_ptr writer = openStream( - streamName, io, adios2::Mode::Write, settings.iolib, - settings.appComm, settings.ioTimer, settings.appId); + std::shared_ptr writer = + openStream(streamName, io, adios2::Mode::Write, settings.iolib, + settings.appComm, settings.ioTimer, settings.appId); writeStreamMap[st.first] = writer; } } @@ -182,8 +177,7 @@ int main(int argc, char *argv[]) auto it = readStreamMap.find(streamName); if (it == readStreamMap.end()) { - std::cout << " Open Input Stream " << streamName - << "... " << std::endl; + std::cout << " Open Input Stream " << streamName << "... " << std::endl; if (!settings.outputPath.empty()) { std::string outputPath = settings.outputPath; @@ -194,9 +188,9 @@ int main(int argc, char *argv[]) streamName = outputPath + streamName; } - std::shared_ptr reader = openStream( - streamName, io, adios2::Mode::Read, settings.iolib, - settings.appComm, settings.ioTimer, settings.appId); + std::shared_ptr reader = + openStream(streamName, io, adios2::Mode::Read, settings.iolib, + settings.appComm, settings.ioTimer, settings.appId); readStreamMap[st.first] = reader; } } @@ -209,14 +203,13 @@ int main(int argc, char *argv[]) { if (!settings.myRank) { - std::cout << "App " + std::to_string(settings.appId) + " Step " - << step << ": " << std::endl; + std::cout << "App " + std::to_string(settings.appId) + " Step " << step << ": " + << std::endl; } for (const auto &cmd : cfg.commands) { if (!cmd->conditionalStream.empty() && - cfg.condMap.at(cmd->conditionalStream) != - adios2::StepStatus::OK) + cfg.condMap.at(cmd->conditionalStream) != adios2::StepStatus::OK) { if (!settings.myRank && settings.verbose) { @@ -236,21 +229,17 @@ int main(int argc, char *argv[]) auto cmdS = dynamic_cast(cmd.get()); if (!settings.myRank && settings.verbose) { - double t = - static_cast(cmdS->sleepTime_us) / 1000000.0; + double t = static_cast(cmdS->sleepTime_us) / 1000000.0; std::cout << " Sleep for " << t << " seconds "; } - std::this_thread::sleep_for( - std::chrono::microseconds(cmdS->sleepTime_us)); + std::this_thread::sleep_for(std::chrono::microseconds(cmdS->sleepTime_us)); adios.ExitComputationBlock(); if (!settings.myRank && settings.verbose) { std::chrono::high_resolution_clock::time_point end = std::chrono::high_resolution_clock::now(); - double t = static_cast((end - start).count()) / - 1000000000.0; - std::cout << " -> Slept for " << t << " seconds " - << std::endl; + double t = static_cast((end - start).count()) / 1000000000.0; + std::cout << " -> Slept for " << t << " seconds " << std::endl; } break; } @@ -262,10 +251,8 @@ int main(int argc, char *argv[]) // std::chrono::microseconds(cmdS->busyTime_us); if (!settings.myRank && settings.verbose) { - double t = - static_cast(cmdS->busyTime_us) / 1000000.0; - std::cout << " Busy for " << cmdS->cycles - << " cycles with " << t + double t = static_cast(cmdS->busyTime_us) / 1000000.0; + std::cout << " Busy for " << cmdS->cycles << " cycles with " << t << " seconds work in each cycle"; } const size_t N = 1048576; @@ -290,18 +277,15 @@ int main(int argc, char *argv[]) { adios.ExitComputationBlock(); } - MPI_Allreduce(f, g, N, MPI_DOUBLE, MPI_SUM, - settings.appComm); + MPI_Allreduce(f, g, N, MPI_DOUBLE, MPI_SUM, settings.appComm); } std::chrono::high_resolution_clock::time_point end = std::chrono::high_resolution_clock::now(); actualBusyTime_usec += (end - start).count() / 1000; if (!settings.myRank && settings.verbose) { - double t = static_cast((end - start).count()) / - 1000000000.0; - std::cout << " -> Was busy for " << t << " seconds " - << std::endl; + double t = static_cast((end - start).count()) / 1000000000.0; + std::cout << " -> Was busy for " << t << " seconds " << std::endl; } break; } @@ -320,8 +304,7 @@ int main(int argc, char *argv[]) { auto stream = readStreamMap[cmdR->streamName]; // auto io = ioMap[cmdR->groupName]; - adios2::StepStatus status = - stream->Read(cmdR, cfg, settings, step); + adios2::StepStatus status = stream->Read(cmdR, cfg, settings, step); statusIt->second = status; switch (status) { @@ -407,11 +390,10 @@ int main(int argc, char *argv[]) if (actualBusyTime_usec > 0) { std::cout << " Total Busy time on Rank 0 was " - << (double)actualBusyTime_usec / 1000000.0 << " seconds " - << std::endl; + << (double)actualBusyTime_usec / 1000000.0 << " seconds " << std::endl; } - std::cout << "ADIOS IOTEST App " << settings.appId << " total time " - << timeEnd - timeStart << " seconds " << std::endl; + std::cout << "ADIOS IOTEST App " << settings.appId << " total time " << timeEnd - timeStart + << " seconds " << std::endl; } MPI_Finalize(); diff --git a/source/utils/adios_iotest/decomp.cpp b/source/utils/adios_iotest/decomp.cpp index 852b086d48..a370e613e7 100644 --- a/source/utils/adios_iotest/decomp.cpp +++ b/source/utils/adios_iotest/decomp.cpp @@ -7,8 +7,7 @@ #include "decomp.h" -void decompColumnMajor(const size_t ndim, const size_t rank, - const size_t *decomp, size_t *pos) +void decompColumnMajor(const size_t ndim, const size_t rank, const size_t *decomp, size_t *pos) { // pos[k] = rank / prod(decomp[i], i=0..k-1) % decomp[k] @@ -20,8 +19,7 @@ void decompColumnMajor(const size_t ndim, const size_t rank, } } -void decompRowMajor(const size_t ndim, const size_t rank, const size_t *decomp, - size_t *pos) +void decompRowMajor(const size_t ndim, const size_t rank, const size_t *decomp, size_t *pos) { // pos[k] = rank / prod(decomp[i], i=k+1..n-1) % decomp[k] diff --git a/source/utils/adios_iotest/decomp.h b/source/utils/adios_iotest/decomp.h index fdaec12d2c..697c458d38 100644 --- a/source/utils/adios_iotest/decomp.h +++ b/source/utils/adios_iotest/decomp.h @@ -31,8 +31,7 @@ * */ -void decompColumnMajor(const size_t ndim, const size_t rank, - const size_t *decomp, size_t *pos); +void decompColumnMajor(const size_t ndim, const size_t rank, const size_t *decomp, size_t *pos); /** Decompose M processes with N-dimensional decomposition in a Row major * fashion. @@ -55,7 +54,6 @@ void decompColumnMajor(const size_t ndim, const size_t rank, * */ -void decompRowMajor(const size_t ndim, const size_t rank, const size_t *decomp, - size_t *pos); +void decompRowMajor(const size_t ndim, const size_t rank, const size_t *decomp, size_t *pos); #endif /* DECOMP_H */ diff --git a/source/utils/adios_iotest/hdf5Stream.cpp b/source/utils/adios_iotest/hdf5Stream.cpp index 109df310d3..aa66adb794 100644 --- a/source/utils/adios_iotest/hdf5Stream.cpp +++ b/source/utils/adios_iotest/hdf5Stream.cpp @@ -17,8 +17,7 @@ #include "adios2/helper/adiosLog.h" -hdf5Stream::hdf5Stream(const std::string &streamName, const adios2::Mode mode, - MPI_Comm comm) +hdf5Stream::hdf5Stream(const std::string &streamName, const adios2::Mode mode, MPI_Comm comm) : Stream(streamName, mode), comm(comm) { hid_t acc_tpl = H5Pcreate(H5P_FILE_ACCESS); @@ -27,9 +26,8 @@ hdf5Stream::hdf5Stream(const std::string &streamName, const adios2::Mode mode, if (ret < 0) { - adios2::helper::Throw( - "Utils::adios_iotest", "hdf5Stream", "hdf5Stream", - "Unable to call set_fapl_mpio"); + adios2::helper::Throw("Utils::adios_iotest", "hdf5Stream", "hdf5Stream", + "Unable to call set_fapl_mpio"); } // int myRank; // MPI_Comm_rank(comm, &myRank); @@ -40,8 +38,7 @@ hdf5Stream::hdf5Stream(const std::string &streamName, const adios2::Mode mode, if (mode == adios2::Mode::Write) { // timeStart = MPI_Wtime(); - h5file = - H5Fcreate(streamName.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, acc_tpl); + h5file = H5Fcreate(streamName.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, acc_tpl); // timeEnd = MPI_Wtime(); } else @@ -66,9 +63,8 @@ hdf5Stream::hdf5Stream(const std::string &streamName, const adios2::Mode mode, ret = H5Pclose(acc_tpl); if (ret < 0) { - adios2::helper::Throw( - "Utils::adios_iotest", "hdf5Stream", "hdf5Stream", - "Unable to call set_fapl_mpio"); + adios2::helper::Throw("Utils::adios_iotest", "hdf5Stream", "hdf5Stream", + "Unable to call set_fapl_mpio"); } } @@ -119,14 +115,13 @@ void hdf5Stream::defineHDF5Array(const std::shared_ptr ov) H5Pset_chunk(cparms, ndim, count.data()); hid_t dataset; - dataset = H5Dcreate2(h5file, ov->name.c_str(), hdf5Type(ov->type), - dataspace, H5P_DEFAULT, cparms, H5P_DEFAULT); + dataset = H5Dcreate2(h5file, ov->name.c_str(), hdf5Type(ov->type), dataspace, H5P_DEFAULT, + cparms, H5P_DEFAULT); varmap.emplace(std::make_pair(ov->name, hdf5VarInfo(dataset, dataspace))); H5Pclose(cparms); } -void hdf5Stream::putHDF5Array(const std::shared_ptr ov, - size_t step) +void hdf5Stream::putHDF5Array(const std::shared_ptr ov, size_t step) { /* note: step starts from 1 */ const auto it = varmap.find(ov->name); @@ -147,24 +142,21 @@ void hdf5Stream::putHDF5Array(const std::shared_ptr ov, H5Dset_extent(vi.dataset, dims.data()); hid_t filespace = H5Dget_space(vi.dataset); - H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start.data(), NULL, - count.data(), NULL); + H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start.data(), NULL, count.data(), NULL); hid_t dxpl_id = H5Pcreate(H5P_DATASET_XFER); H5Pset_dxpl_mpio(dxpl_id, H5FD_MPIO_COLLECTIVE); hid_t memspace = H5Screate_simple(ndim, count.data(), NULL); - H5Dwrite(vi.dataset, hdf5Type(ov->type), memspace, filespace, dxpl_id, - ov->data.data()); + H5Dwrite(vi.dataset, hdf5Type(ov->type), memspace, filespace, dxpl_id, ov->data.data()); H5Pclose(dxpl_id); H5Sclose(filespace); H5Sclose(memspace); } -void hdf5Stream::Write(CommandWrite *cmdW, Config &cfg, - const Settings &settings, size_t step) +void hdf5Stream::Write(CommandWrite *cmdW, Config &cfg, const Settings &settings, size_t step) { if (!settings.myRank && settings.verbose) { - std::cout << " Write to HDF5 output " << cmdW->streamName - << " the group " << cmdW->groupName; + std::cout << " Write to HDF5 output " << cmdW->streamName << " the group " + << cmdW->groupName; if (!cmdW->variables.empty()) { std::cout << " with selected variables: "; @@ -176,10 +168,8 @@ void hdf5Stream::Write(CommandWrite *cmdW, Config &cfg, std::cout << std::endl; } - const double div = - pow(10.0, static_cast(settings.ndigits(cfg.nSteps - 1))); - double myValue = static_cast(settings.myRank) + - static_cast(step - 1) / div; + const double div = pow(10.0, static_cast(settings.ndigits(cfg.nSteps - 1))); + double myValue = static_cast(settings.myRank) + static_cast(step - 1) / div; for (auto ov : cmdW->variables) { @@ -192,8 +182,7 @@ void hdf5Stream::Write(CommandWrite *cmdW, Config &cfg, { if (!settings.myRank && settings.verbose) { - std::cout << " Define array " << ov->name - << " for output" << std::endl; + std::cout << " Define array " << ov->name << " for output" << std::endl; } defineHDF5Array(ov); } @@ -204,8 +193,7 @@ void hdf5Stream::Write(CommandWrite *cmdW, Config &cfg, { if (!settings.myRank && settings.verbose) { - std::cout << " Fill array " << ov->name - << " for output" << std::endl; + std::cout << " Fill array " << ov->name << " for output" << std::endl; } fillArray(ov, myValue); } @@ -232,14 +220,12 @@ void hdf5Stream::Write(CommandWrite *cmdW, Config &cfg, MPI_Allreduce(&writeTime, &minWriteTime, 1, MPI_DOUBLE, MPI_MIN, comm); if (settings.myRank == 0) { - std::cout << " Max write time = " << maxWriteTime - << std::endl; - std::cout << " Min write time = " << minWriteTime - << std::endl; + std::cout << " Max write time = " << maxWriteTime << std::endl; + std::cout << " Min write time = " << minWriteTime << std::endl; std::ofstream wr_perf_log; wr_perf_log.open("write_perf.txt", std::ios::app); - wr_perf_log << std::to_string(maxWriteTime) + ", " + - std::to_string(minWriteTime) + "\n"; + wr_perf_log << std::to_string(maxWriteTime) + ", " + std::to_string(minWriteTime) + + "\n"; wr_perf_log.close(); } } @@ -254,14 +240,12 @@ void hdf5Stream::getHDF5Array(std::shared_ptr ov, size_t step) dataset = H5Dopen2(h5file, ov->name.c_str(), H5P_DEFAULT); if (dataset == -1) { - std::cout << " Variable " << ov->name - << " is not in the file: " << std::endl; + std::cout << " Variable " << ov->name << " is not in the file: " << std::endl; ov->readFromInput = false; return; } filespace = H5Dget_space(dataset); - varmap.emplace( - std::make_pair(ov->name, hdf5VarInfo(dataset, filespace))); + varmap.emplace(std::make_pair(ov->name, hdf5VarInfo(dataset, filespace))); } else { @@ -291,8 +275,7 @@ void hdf5Stream::getHDF5Array(std::shared_ptr ov, size_t step) hid_t memspace = H5Screate_simple(ndim, count.data(), NULL); hid_t dxpl_id = H5Pcreate(H5P_DATASET_XFER); H5Pset_dxpl_mpio(dxpl_id, H5FD_MPIO_COLLECTIVE); - H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start.data(), NULL, - count.data(), NULL); + H5Sselect_hyperslab(filespace, H5S_SELECT_SET, start.data(), NULL, count.data(), NULL); void *buf = reinterpret_cast(ov->data.data()); H5Dread(dataset, hdf5Type(ov->type), memspace, filespace, dxpl_id, buf); @@ -301,8 +284,8 @@ void hdf5Stream::getHDF5Array(std::shared_ptr ov, size_t step) ov->readFromInput = true; } -adios2::StepStatus hdf5Stream::Read(CommandRead *cmdR, Config &cfg, - const Settings &settings, size_t step) +adios2::StepStatus hdf5Stream::Read(CommandRead *cmdR, Config &cfg, const Settings &settings, + size_t step) { if (!settings.myRank && settings.verbose) { @@ -339,8 +322,7 @@ adios2::StepStatus hdf5Stream::Read(CommandRead *cmdR, Config &cfg, nSteps = dims[0]; if (!settings.myRank && settings.verbose) { - std::cout << " Number of steps in file: " << nSteps - << std::endl; + std::cout << " Number of steps in file: " << nSteps << std::endl; } H5Sclose(filespace); H5Dclose(dataset); @@ -384,8 +366,7 @@ adios2::StepStatus hdf5Stream::Read(CommandRead *cmdR, Config &cfg, std::cout << " Min read time = " << minReadTime << std::endl; std::ofstream rd_perf_log; rd_perf_log.open("read_perf.txt", std::ios::app); - rd_perf_log << std::to_string(maxReadTime) + ", " + - std::to_string(minReadTime) + "\n"; + rd_perf_log << std::to_string(maxReadTime) + ", " + std::to_string(minReadTime) + "\n"; rd_perf_log.close(); } } diff --git a/source/utils/adios_iotest/hdf5Stream.h b/source/utils/adios_iotest/hdf5Stream.h index e05640acf4..03af6c9fb1 100644 --- a/source/utils/adios_iotest/hdf5Stream.h +++ b/source/utils/adios_iotest/hdf5Stream.h @@ -18,8 +18,7 @@ struct hdf5VarInfo { hid_t dataspace; hid_t dataset; - hdf5VarInfo(hid_t dataset, hid_t dataspace) - : dataspace(dataspace), dataset(dataset){}; + hdf5VarInfo(hid_t dataset, hid_t dataspace) : dataspace(dataspace), dataset(dataset){}; }; using H5VarMap = std::map; @@ -29,13 +28,10 @@ class hdf5Stream : public Stream public: hid_t h5file; H5VarMap varmap; - hdf5Stream(const std::string &streamName, const adios2::Mode mode, - MPI_Comm comm); + hdf5Stream(const std::string &streamName, const adios2::Mode mode, MPI_Comm comm); ~hdf5Stream(); - void Write(CommandWrite *cmdW, Config &cfg, const Settings &settings, - size_t step); - adios2::StepStatus Read(CommandRead *cmdR, Config &cfg, - const Settings &settings, size_t step); + void Write(CommandWrite *cmdW, Config &cfg, const Settings &settings, size_t step); + adios2::StepStatus Read(CommandRead *cmdR, Config &cfg, const Settings &settings, size_t step); void Close(); private: diff --git a/source/utils/adios_iotest/ioGroup.cpp b/source/utils/adios_iotest/ioGroup.cpp index 5e025e565b..d3ca19cab3 100644 --- a/source/utils/adios_iotest/ioGroup.cpp +++ b/source/utils/adios_iotest/ioGroup.cpp @@ -11,8 +11,7 @@ #include "hdf5.h" #endif -std::shared_ptr createGroup(const std::string &name, IOLib iolib, - adios2::ADIOS &adiosobj) +std::shared_ptr createGroup(const std::string &name, IOLib iolib, adios2::ADIOS &adiosobj) { std::shared_ptr gp; switch (iolib) diff --git a/source/utils/adios_iotest/ioGroup.h b/source/utils/adios_iotest/ioGroup.h index e3bc23f120..a4e77c11f6 100644 --- a/source/utils/adios_iotest/ioGroup.h +++ b/source/utils/adios_iotest/ioGroup.h @@ -26,8 +26,7 @@ class ioGroup class adiosIOGroup : public ioGroup { public: - adiosIOGroup(const std::string &name, adios2::ADIOS &adiosobj) - : ioGroup(name) + adiosIOGroup(const std::string &name, adios2::ADIOS &adiosobj) : ioGroup(name) { adiosio = adiosobj.DeclareIO(name); }; @@ -41,7 +40,6 @@ class hdf5IOGroup : public ioGroup ~hdf5IOGroup(){}; }; -std::shared_ptr createGroup(const std::string &name, IOLib iolib, - adios2::ADIOS &adiosobj); +std::shared_ptr createGroup(const std::string &name, IOLib iolib, adios2::ADIOS &adiosobj); #endif /* IOGROUP_H */ diff --git a/source/utils/adios_iotest/processConfig.cpp b/source/utils/adios_iotest/processConfig.cpp index 5c812f1903..44edec7d44 100644 --- a/source/utils/adios_iotest/processConfig.cpp +++ b/source/utils/adios_iotest/processConfig.cpp @@ -24,10 +24,7 @@ Command::Command(Operation operation) : op(operation) {} Command::~Command() {} -CommandSleep::CommandSleep(size_t time) -: Command(Operation::Sleep), sleepTime_us(time) -{ -} +CommandSleep::CommandSleep(size_t time) : Command(Operation::Sleep), sleepTime_us(time) {} CommandSleep::~CommandSleep() {} CommandBusy::CommandBusy(size_t cycles, size_t time) @@ -42,10 +39,9 @@ CommandWrite::CommandWrite(std::string stream, std::string group) } CommandWrite::~CommandWrite() {} -CommandRead::CommandRead(std::string stream, std::string group, - const float timeoutSec) -: Command(Operation::Read), stepMode(adios2::StepMode::Read), - streamName(stream), groupName(group), timeout_sec(timeoutSec) +CommandRead::CommandRead(std::string stream, std::string group, const float timeoutSec) +: Command(Operation::Read), stepMode(adios2::StepMode::Read), streamName(stream), groupName(group), + timeout_sec(timeoutSec) { } CommandRead::~CommandRead() {} @@ -64,8 +60,8 @@ std::vector LineToWords(const std::string &line) { std::vector tokens; std::istringstream iss(line); - std::copy(std::istream_iterator(iss), - std::istream_iterator(), back_inserter(tokens)); + std::copy(std::istream_iterator(iss), std::istream_iterator(), + back_inserter(tokens)); return tokens; } @@ -79,15 +75,13 @@ bool isComment(std::string &s) return comment; } -size_t stringToSizet(std::vector &words, size_t pos, - std::string lineID) +size_t stringToSizet(std::vector &words, size_t pos, std::string lineID) { if (words.size() < pos + 1) { adios2::helper::Throw( "Utils::adios_iotest", "processConfig", "stringToSizet", - "Line for " + lineID + - " is invalid. Missing value at word position " + + "Line for " + lineID + " is invalid. Missing value at word position " + std::to_string(pos + 1)); } @@ -103,15 +97,13 @@ size_t stringToSizet(std::vector &words, size_t pos, return n; } -double stringToDouble(std::vector &words, size_t pos, - std::string lineID) +double stringToDouble(std::vector &words, size_t pos, std::string lineID) { if (words.size() < pos + 1) { adios2::helper::Throw( "Utils::adios_iotest", "processConfig", "stringToDouble", - "Line for " + lineID + - " is invalid. Missing floating point value at word position " + + "Line for " + lineID + " is invalid. Missing floating point value at word position " + std::to_string(pos + 1)); } @@ -122,8 +114,7 @@ double stringToDouble(std::vector &words, size_t pos, { adios2::helper::Throw( "Utils::adios_iotest", "processConfig", "stringToDouble", - "Invalid floating point value given for " + lineID + ": " + - words[pos]); + "Invalid floating point value given for " + lineID + ": " + words[pos]); } return d; } @@ -176,8 +167,7 @@ std::string DimsToString(const adios2::Dims &dims) noexcept return s; } -size_t processDecomp(std::string &word, const Settings &settings, - std::string decompID) +size_t processDecomp(std::string &word, const Settings &settings, std::string decompID) { size_t decomp = 1; std::string w(word); @@ -213,9 +203,8 @@ size_t processDecomp(std::string &word, const Settings &settings, { adios2::helper::Throw( "Utils::adios_iotest", "processConfig", "processDecomp", - "Invalid identifier '" + std::string(1, c) + "' for " + - decompID + " in character position " + - std::to_string(i + 1) + + "Invalid identifier '" + std::string(1, c) + "' for " + decompID + + " in character position " + std::to_string(i + 1) + ". Only accepted characters are XYZVW and 1"); } } @@ -231,14 +220,12 @@ size_t getTypeSize(std::string &type) return t.second; } } - adios2::helper::Throw( - "Utils::adios_iotest", "processConfig", "getTypeSize", - "Type '" + type + "' is invalid. "); + adios2::helper::Throw("Utils::adios_iotest", "processConfig", + "getTypeSize", "Type '" + type + "' is invalid. "); return 0; } -VariableInfo processArray(std::vector &words, - const Settings &settings) +VariableInfo processArray(std::vector &words, const Settings &settings) { if (words.size() < 4) { @@ -252,8 +239,7 @@ VariableInfo processArray(std::vector &words, ov.type = words[1]; ov.elemsize = getTypeSize(ov.type); ov.name = words[2]; - ov.ndim = - stringToSizet(words, 3, "number of dimensions of array " + ov.name); + ov.ndim = stringToSizet(words, 3, "number of dimensions of array " + ov.name); ov.readFromInput = false; if (words.size() < 4 + 2 * ov.ndim) @@ -269,13 +255,11 @@ VariableInfo processArray(std::vector &words, { if (settings.isStrongScaling) { - ov.shape.push_back(stringToSizet( - words, 4 + i, "dimension " + std::to_string(i + 1))); + ov.shape.push_back(stringToSizet(words, 4 + i, "dimension " + std::to_string(i + 1))); } else { - ov.count.push_back(stringToSizet( - words, 4 + i, "dimension " + std::to_string(i + 1))); + ov.count.push_back(stringToSizet(words, 4 + i, "dimension " + std::to_string(i + 1))); } } @@ -292,10 +276,9 @@ VariableInfo processArray(std::vector &words, adios2::helper::Throw( "Utils::adios_iotest", "processConfig", "processArray", "Invalid decomposition for array '" + ov.name + - "'. The product of the decompositions (here " + - std::to_string(nprocDecomp) + - ") must equal the number of processes (here " + - std::to_string(settings.nProc) + ")"); + "'. The product of the decompositions (here " + std::to_string(nprocDecomp) + + ") must equal the number of processes (here " + std::to_string(settings.nProc) + + ")"); } return ov; } @@ -311,9 +294,8 @@ void printConfig(const Config &cfg) std::cout << " Group " << mapIt.first << ":" << std::endl; for (const auto &vi : mapIt.second) { - std::cout << " " << vi->type << " " << vi->name - << DimsToString(vi->shape) << " decomposed as " - << DimsToString(vi->decomp) << std::endl; + std::cout << " " << vi->type << " " << vi->name << DimsToString(vi->shape) + << " decomposed as " << DimsToString(vi->decomp) << std::endl; } std::cout << std::endl; } @@ -330,21 +312,20 @@ void printConfig(const Config &cfg) { case Operation::Sleep: { auto cmdS = dynamic_cast(cmd.get()); - std::cout << " Sleep for " << cmdS->sleepTime_us - << " microseconds " << std::endl; + std::cout << " Sleep for " << cmdS->sleepTime_us << " microseconds " + << std::endl; break; } case Operation::Busy: { auto cmdS = dynamic_cast(cmd.get()); - std::cout << " Be busy for " << cmdS->cycles - << " compute cycles with " << cmdS->busyTime_us - << " microseconds of computation each " << std::endl; + std::cout << " Be busy for " << cmdS->cycles << " compute cycles with " + << cmdS->busyTime_us << " microseconds of computation each " << std::endl; break; } case Operation::Write: { auto cmdW = dynamic_cast(cmd.get()); - std::cout << " Write to output " << cmdW->streamName - << " the group " << cmdW->groupName; + std::cout << " Write to output " << cmdW->streamName << " the group " + << cmdW->groupName; auto grpIt = cfg.groupVariablesMap.find(cmdW->groupName); if (cmdW->variables.size() < grpIt->second.size()) { @@ -369,8 +350,7 @@ void printConfig(const Config &cfg) std::cout << "latest step from "; } - std::cout << cmdR->streamName << " using the group " - << cmdR->groupName; + std::cout << cmdR->streamName << " using the group " << cmdR->groupName; if (!cmdR->variables.empty()) { std::cout << " with selected variables: "; @@ -397,8 +377,8 @@ void printVarMaps(Config &cfg, std::string &groupName) for (auto &v : grpIt->second) { std::cout << " variable name first = " << v.first - << " second->name = " << v.second->name - << " type = " << v.second->type << std::endl; + << " second->name = " << v.second->name << " type = " << v.second->type + << std::endl; } } @@ -412,8 +392,8 @@ void globalChecks(const Config &cfg, const Settings &settings) { adios2::helper::Throw( "Utils::adios_iotest", "processConfig", "globalChecks", - "Name used in conditional is not a read stream: '" + - cmd->conditionalStream + "'"); + "Name used in conditional is not a read stream: '" + cmd->conditionalStream + + "'"); } } } @@ -423,16 +403,14 @@ void globalChecks(const Config &cfg, const Settings &settings) { adios2::helper::Throw( "Utils::adios_iotest", "processConfig", "globalChecks", - "Name used in step over command is not a read stream: '" + - it.first + "' "); + "Name used in step over command is not a read stream: '" + it.first + "' "); } } } Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) { - unsigned int verbose0 = - (settings.myRank ? 0 : settings.verbose); // only rank 0 prints info + unsigned int verbose0 = (settings.myRank ? 0 : settings.verbose); // only rank 0 prints info std::ifstream configFile(settings.configFileName); if (!configFile.is_open()) { @@ -442,16 +420,14 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) } if (verbose0) { - std::cout << "Process config file " << settings.configFileName - << std::endl; + std::cout << "Process config file " << settings.configFileName << std::endl; } Config cfg; std::string currentGroup; int currentAppId = -1; std::vector> *currentVarList = nullptr; - std::map> *currentVarMap = - nullptr; + std::map> *currentVarMap = nullptr; std::vector lines = FileToLines(configFile); for (auto &line : lines) { @@ -459,8 +435,7 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) ++*currentConfigLineNumber; if (verbose0 > 1) { - std::cout << "config " << *currentConfigLineNumber << ": " << line - << std::endl; + std::cout << "config " << *currentConfigLineNumber << ": " << line << std::endl; } std::vector words = LineToWords(line); if (!words.empty() && !isComment(words[0])) @@ -503,16 +478,13 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) currentGroup = words[1]; if (verbose0) { - std::cout << "--> New variable group: " << currentGroup - << std::endl; + std::cout << "--> New variable group: " << currentGroup << std::endl; } auto it1 = cfg.groupVariableListMap.emplace( - currentGroup, - std::initializer_list>{}); + currentGroup, std::initializer_list>{}); currentVarList = &it1.first->second; std::map> emptymap; - auto it2 = - cfg.groupVariablesMap.emplace(currentGroup, emptymap); + auto it2 = cfg.groupVariablesMap.emplace(currentGroup, emptymap); currentVarMap = &it2.first->second; } else if (key == "app") @@ -520,12 +492,10 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) currentAppId = static_cast(stringToSizet(words, 1, "app")); if (verbose0) { - std::cout << "--> Application ID is set to: " - << currentAppId; + std::cout << "--> Application ID is set to: " << currentAppId; if (currentAppId != static_cast(settings.appId)) { - std::cout << " Ignore commands set for this ID" - << std::endl; + std::cout << " Ignore commands set for this ID" << std::endl; } else { @@ -542,8 +512,7 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) { if (cfg.nSteps) { - std::cout << "--> Steps is set to: " << cfg.nSteps - << std::endl; + std::cout << "--> Steps is set to: " << cfg.nSteps << std::endl; } else { @@ -564,9 +533,8 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) double d = stringToDouble(words, 1, "sleep"); if (verbose0) { - std::cout - << "--> Command Sleep for: " << std::setprecision(7) - << d << " seconds" << std::endl; + std::cout << "--> Command Sleep for: " << std::setprecision(7) << d + << " seconds" << std::endl; } size_t t_us = static_cast(d * 1000000); auto cmd = std::make_shared(t_us); @@ -578,14 +546,12 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) { if (currentAppId == static_cast(settings.appId)) { - size_t cycles = - static_cast(stringToSizet(words, 1, "busy")); + size_t cycles = static_cast(stringToSizet(words, 1, "busy")); double d = stringToDouble(words, 2, "busy"); if (verbose0) { - std::cout << "--> Command Busy for: " << cycles - << " cycles with " << std::setprecision(7) - << d << " seconds computation each" + std::cout << "--> Command Busy for: " << cycles << " cycles with " + << std::setprecision(7) << d << " seconds computation each" << std::endl; } size_t t_us = static_cast(d * 1000000); @@ -601,8 +567,7 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) if (words.size() < 3) { adios2::helper::Throw( - "Utils::adios_iotest", "processConfig", - "processConfig", + "Utils::adios_iotest", "processConfig", "processConfig", "Line for 'write' is invalid. Need at least output " "name and group name "); } @@ -612,10 +577,8 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) if (grpIt == cfg.groupVariablesMap.end()) { adios2::helper::Throw( - "Utils::adios_iotest", "processConfig", - "processConfig", - "Group '" + groupName + - "' used in 'write' command is undefined. "); + "Utils::adios_iotest", "processConfig", "processConfig", + "Group '" + groupName + "' used in 'write' command is undefined. "); } if (verbose0) @@ -623,8 +586,7 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) std::cout << "--> Command Write output = " << fileName << " group = " << groupName << std::endl; } - auto cmd = - std::make_shared(fileName, groupName); + auto cmd = std::make_shared(fileName, groupName); cmd->conditionalStream = conditionalStream; cfg.commands.push_back(cmd); @@ -636,8 +598,7 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) if (vIt == grpIt->second.end()) { adios2::helper::Throw( - "Utils::adios_iotest", "processConfig", - "processConfig", + "Utils::adios_iotest", "processConfig", "processConfig", "Group '" + groupName + "' used in 'write' command has no variable " "'" + @@ -667,14 +628,12 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) if (words.size() < 4) { adios2::helper::Throw( - "Utils::adios_iotest", "processConfig", - "processConfig", + "Utils::adios_iotest", "processConfig", "processConfig", "Line for 'read' is invalid. Need at least 3 " "arguments: mode, output name, group name "); } std::string mode(words[1]); - std::transform(mode.begin(), mode.end(), mode.begin(), - ::tolower); + std::transform(mode.begin(), mode.end(), mode.begin(), ::tolower); std::string streamName(words[2]); std::string groupName(words[3]); if (verbose0) @@ -685,16 +644,13 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) if (grpIt == cfg.groupVariablesMap.end()) { adios2::helper::Throw( - "Utils::adios_iotest", "processConfig", - "processConfig", - "Group '" + groupName + - "' used in 'read' command is undefined. "); + "Utils::adios_iotest", "processConfig", "processConfig", + "Group '" + groupName + "' used in 'read' command is undefined. "); } if (mode != "next" && mode != "latest") { adios2::helper::Throw( - "Utils::adios_iotest", "processConfig", - "processConfig", + "Utils::adios_iotest", "processConfig", "processConfig", "Mode (1st argument) for 'read' is invalid. It " "must be either 'next' or 'latest'"); } @@ -712,8 +668,7 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) if (verbose0) { - std::cout << "--> Command Read mode = " << mode - << " input = " << words[2] + std::cout << "--> Command Read mode = " << mode << " input = " << words[2] << " group = " << groupName << " timeout = "; if (d < 0.0) { @@ -725,8 +680,8 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) } std::cout << std::endl; } - auto cmd = std::make_shared( - streamName, groupName, static_cast(d)); + auto cmd = + std::make_shared(streamName, groupName, static_cast(d)); cmd->conditionalStream = conditionalStream; cfg.commands.push_back(cmd); cfg.condMap[streamName] = adios2::StepStatus::OK; @@ -739,8 +694,7 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) if (vIt == grpIt->second.end()) { adios2::helper::Throw( - "Utils::adios_iotest", "processConfig", - "processConfig", + "Utils::adios_iotest", "processConfig", "processConfig", "Group '" + groupName + "' used in 'write' command has no variable " "'" + @@ -748,13 +702,11 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) } if (verbose0) { - std::cout << " select variable = " - << vIt->second->name << std::endl; - std::cout << " DEBUG variable = " - << vIt->second->name + std::cout << " select variable = " << vIt->second->name + << std::endl; + std::cout << " DEBUG variable = " << vIt->second->name << " type = " << vIt->second->type - << " varmap = " - << static_cast(vIt->second.get()) + << " varmap = " << static_cast(vIt->second.get()) << std::endl; } cmd->variables.push_back(vIt->second); @@ -778,14 +730,12 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) { // process config line and get global array info std::shared_ptr ovp = - std::make_shared( - processArray(words, settings)); + std::make_shared(processArray(words, settings)); ovp->datasize = ovp->elemsize; // Position of rank in N-dim space std::vector pos(ovp->ndim); // Calculate rank's position in N-dim space - decompRowMajor(ovp->ndim, settings.myRank, ovp->decomp.data(), - pos.data()); + decompRowMajor(ovp->ndim, settings.myRank, ovp->decomp.data(), pos.data()); if (settings.isStrongScaling) { @@ -832,27 +782,25 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) auto grpIt = cfg.groupVariablesMap.find(currentGroup); auto vIt = grpIt->second.find(ovp->name); std::cout << " DEBUG variable = " << vIt->second->name - << " type = " << vIt->second->type << " varmap = " - << static_cast(vIt->second.get()) + << " type = " << vIt->second->type + << " varmap = " << static_cast(vIt->second.get()) << std::endl; } if (settings.verbose > 2) { std::cout << "--> rank = " << settings.myRank - << ": Variable array name = " << ovp->name - << " type = " << ovp->type + << ": Variable array name = " << ovp->name << " type = " << ovp->type << " elemsize = " << ovp->elemsize << " local datasize = " << ovp->datasize << " shape = " << DimsToString(ovp->shape) << " start = " << DimsToString(ovp->start) - << " count = " << DimsToString(ovp->count) - << std::endl; + << " count = " << DimsToString(ovp->count) << std::endl; } else if (verbose0) { std::cout << "--> Variable array name = " << ovp->name - << " type = " << ovp->type - << " elemsize = " << ovp->elemsize << std::endl; + << " type = " << ovp->type << " elemsize = " << ovp->elemsize + << std::endl; } } else if (key == "link") @@ -870,14 +818,12 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) { adios2::helper::Throw( "Utils::adios_iotest", "processConfig", "processConfig", - "Group '" + groupName + - "' used in 'link' command is undefined. "); + "Group '" + groupName + "' used in 'link' command is undefined. "); } if (verbose0) { - std::cout << "--> Link variables from group = " << groupName - << ": "; + std::cout << "--> Link variables from group = " << groupName << ": "; } // parse the optional variable list @@ -890,8 +836,7 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) if (vIt == grpIt->second.end()) { adios2::helper::Throw( - "Utils::adios_iotest", "processConfig", - "processConfig", + "Utils::adios_iotest", "processConfig", "processConfig", "Group '" + groupName + "' used in 'link' command has no variable " "'" + @@ -928,9 +873,9 @@ Config processConfig(const Settings &settings, size_t *currentConfigLineNumber) } else { - adios2::helper::Throw( - "Utils::adios_iotest", "processConfig", "processConfig", - "Unrecognized keyword '" + key + "'."); + adios2::helper::Throw("Utils::adios_iotest", "processConfig", + "processConfig", + "Unrecognized keyword '" + key + "'."); } } } diff --git a/source/utils/adios_iotest/processConfig.h b/source/utils/adios_iotest/processConfig.h index b4018f9f84..2e28eb11d1 100644 --- a/source/utils/adios_iotest/processConfig.h +++ b/source/utils/adios_iotest/processConfig.h @@ -84,8 +84,7 @@ class CommandRead : public Command const std::string groupName; const float timeout_sec; std::vector> variables; - CommandRead(std::string stream, std::string group, - const float timeoutSec = -1.0); + CommandRead(std::string stream, std::string group, const float timeoutSec = -1.0); ~CommandRead(); }; @@ -95,12 +94,10 @@ struct Config // list of input streams that we loop over instead of nSteps std::map stepOverStreams; // groupName, list of variables to preserve user defined order - std::map>> - groupVariableListMap; + std::map>> groupVariableListMap; // same group/variables but in an ordered map for finding // a particular variable - std::map>> - groupVariablesMap; + std::map>> groupVariablesMap; // appID, list of commands std::vector> commands; // Read streams status flag for supporting conditionals diff --git a/source/utils/adios_iotest/settings.cpp b/source/utils/adios_iotest/settings.cpp index 495ead1788..963e37acd9 100644 --- a/source/utils/adios_iotest/settings.cpp +++ b/source/utils/adios_iotest/settings.cpp @@ -48,41 +48,39 @@ size_t Settings::ndigits(size_t n) const void Settings::displayHelp() { - std::cout - << "Usage: adios_iotest -a appid -c config {-s | -w} {-d d1[,d2,..,dN] " - "| -D r1[,r2,..,rN]}" - "[-x " - "file]\n" - << " -a appID: unique number for each application in the workflow\n" - << " -c config: data specification config file\n" - << " -d ... define process decomposition:\n" - << " d1: number of processes in 1st (slowest) dimension\n" - << " dN: number of processes in Nth dimension\n" - << " d1*d2*..*dN must equal the number of processes\n" - << " -D ... define process decomposition ratio:\n" - << " r1: ratio of process decomposition in the 1st " - "(slowest) dimension\n" - << " rN: ratio of process decomposition in the Nth " - "dimension\n" - << " r1xr2x..xrN must scale up to process count" - "count without remainder\n" - << " -s OR -w: strong or weak scaling. \n" - << " Dimensions in config are treated accordingly\n" - << " -x file ADIOS configuration XML file\n" + std::cout << "Usage: adios_iotest -a appid -c config {-s | -w} {-d d1[,d2,..,dN] " + "| -D r1[,r2,..,rN]}" + "[-x " + "file]\n" + << " -a appID: unique number for each application in the workflow\n" + << " -c config: data specification config file\n" + << " -d ... define process decomposition:\n" + << " d1: number of processes in 1st (slowest) dimension\n" + << " dN: number of processes in Nth dimension\n" + << " d1*d2*..*dN must equal the number of processes\n" + << " -D ... define process decomposition ratio:\n" + << " r1: ratio of process decomposition in the 1st " + "(slowest) dimension\n" + << " rN: ratio of process decomposition in the Nth " + "dimension\n" + << " r1xr2x..xrN must scale up to process count" + "count without remainder\n" + << " -s OR -w: strong or weak scaling. \n" + << " Dimensions in config are treated accordingly\n" + << " -x file ADIOS configuration XML file\n" #ifdef ADIOS2_HAVE_HDF5_PARALLEL - << " --hdf5 Use native Parallel HDF5 instead of ADIOS for I/O\n" + << " --hdf5 Use native Parallel HDF5 instead of ADIOS for I/O\n" #endif - << " -v increase verbosity\n" - << " -h display this help\n" - << " -F turn on fixed I/O pattern explicitly\n" - << " -T turn on multi-threaded MPI (needed by SST/MPI)\n" - << " -p specify the path of the output explicitly\n" - << " -t print and dump the timing measured by the I/O " - "timer\n\n"; + << " -v increase verbosity\n" + << " -h display this help\n" + << " -F turn on fixed I/O pattern explicitly\n" + << " -T turn on multi-threaded MPI (needed by SST/MPI)\n" + << " -p specify the path of the output explicitly\n" + << " -t print and dump the timing measured by the I/O " + "timer\n\n"; } -size_t Settings::stringToNumber(const std::string &varName, - const char *arg) const +size_t Settings::stringToNumber(const std::string &varName, const char *arg) const { char *end; size_t retval = static_cast(std::strtoull(arg, &end, 10)); @@ -127,8 +125,7 @@ int Settings::rescaleDecomp() ratioProd *= processDecomp[i]; } - for (scaleFactor = 1; ratioProd * pow(scaleFactor, nDecomp) <= nProc; - scaleFactor++) + for (scaleFactor = 1; ratioProd * pow(scaleFactor, nDecomp) <= nProc; scaleFactor++) { if (ratioProd * pow(scaleFactor, nDecomp) == nProc) { @@ -179,8 +176,7 @@ int Settings::processArgs(int argc, char *argv[]) } else { - processDecomp[nDecomp] = - stringToNumber("decomposition in dimension 1", optarg); + processDecomp[nDecomp] = stringToNumber("decomposition in dimension 1", optarg); ++nDecomp; } decompDefined = true; @@ -198,8 +194,7 @@ int Settings::processArgs(int argc, char *argv[]) } else { - processDecomp[nDecomp] = - stringToNumber("decomposition in dimension 1", optarg); + processDecomp[nDecomp] = stringToNumber("decomposition in dimension 1", optarg); ++nDecomp; } decompDefined = true; @@ -261,8 +256,7 @@ int Settings::processArgs(int argc, char *argv[]) if (last_c == 'd' || last_c == 'D') { // --decomp extra arg (or not if not a number) processDecomp[nDecomp] = stringToNumber( - "decomposition in dimension " + std::to_string(nDecomp + 1), - optarg); + "decomposition in dimension " + std::to_string(nDecomp + 1), optarg); ++nDecomp; } else @@ -294,8 +288,7 @@ int Settings::processArgs(int argc, char *argv[]) ++optind; } adios2::helper::Throw( - "Utils::adios_iotest", "settings", "processArgs", - "There are unknown arguments: " + s); + "Utils::adios_iotest", "settings", "processArgs", "There are unknown arguments: " + s); } /* Check if we have a everything defined */ @@ -387,8 +380,7 @@ int Settings::extraArgumentChecks() if (N != nProc) { std::cout << "ERROR : Product of decomposition values = " << N - << " must equal the number of processes = " << nProc - << std::endl; + << " must equal the number of processes = " << nProc << std::endl; return 1; } return 0; diff --git a/source/utils/adios_iotest/settings.h b/source/utils/adios_iotest/settings.h index b02d69ed50..4842bf4a82 100644 --- a/source/utils/adios_iotest/settings.h +++ b/source/utils/adios_iotest/settings.h @@ -45,8 +45,7 @@ class Settings bool multithreadedMPI = false; // turn on MT-enabled MPI IOLib iolib = IOLib::ADIOS; // process decomposition - std::vector processDecomp = {1, 1, 1, 1, 1, 1, 1, 1, - 1, 1, 1, 1, 1, 1, 1, 1}; + std::vector processDecomp = {1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1}; /* public variables */ MPI_Comm appComm = MPI_COMM_WORLD; // will change to split communicator diff --git a/source/utils/adios_iotest/stream.cpp b/source/utils/adios_iotest/stream.cpp index 8f32075599..72961f03e0 100644 --- a/source/utils/adios_iotest/stream.cpp +++ b/source/utils/adios_iotest/stream.cpp @@ -51,17 +51,15 @@ void Stream::fillArray(std::shared_ptr ov, double value) } } -std::shared_ptr openStream(const std::string &streamName, - std::shared_ptr iogroup, - const adios2::Mode mode, IOLib iolib, - MPI_Comm comm, bool iotimer, size_t appid) +std::shared_ptr openStream(const std::string &streamName, std::shared_ptr iogroup, + const adios2::Mode mode, IOLib iolib, MPI_Comm comm, + bool iotimer, size_t appid) { std::shared_ptr sp; switch (iolib) { case IOLib::ADIOS: { - auto s = adiosStream(streamName, iogroup->adiosio, mode, comm, iotimer, - appid); + auto s = adiosStream(streamName, iogroup->adiosio, mode, comm, iotimer, appid); sp = std::make_shared(s); break; } diff --git a/source/utils/adios_iotest/stream.h b/source/utils/adios_iotest/stream.h index cf5f5e834d..6353993c3f 100644 --- a/source/utils/adios_iotest/stream.h +++ b/source/utils/adios_iotest/stream.h @@ -22,19 +22,17 @@ class Stream adios2::Mode mode; Stream(const std::string &streamName, const adios2::Mode mode); virtual ~Stream() = 0; - virtual void Write(CommandWrite *cmdW, Config &cfg, - const Settings &settings, size_t step) = 0; - virtual adios2::StepStatus Read(CommandRead *cmdR, Config &cfg, - const Settings &settings, size_t step) = 0; + virtual void Write(CommandWrite *cmdW, Config &cfg, const Settings &settings, size_t step) = 0; + virtual adios2::StepStatus Read(CommandRead *cmdR, Config &cfg, const Settings &settings, + size_t step) = 0; virtual void Close() = 0; protected: void fillArray(std::shared_ptr ov, double value); }; -std::shared_ptr openStream(const std::string &streamName, - std::shared_ptr iogroup, - const adios2::Mode mode, IOLib iolib, - MPI_Comm comm, bool iotimer, size_t appid); +std::shared_ptr openStream(const std::string &streamName, std::shared_ptr iogroup, + const adios2::Mode mode, IOLib iolib, MPI_Comm comm, + bool iotimer, size_t appid); #endif /* STREAM_H */ diff --git a/source/utils/adios_reorganize/Reorganize.cpp b/source/utils/adios_reorganize/Reorganize.cpp index 4af70a8575..dc1288fe15 100644 --- a/source/utils/adios_reorganize/Reorganize.cpp +++ b/source/utils/adios_reorganize/Reorganize.cpp @@ -47,8 +47,7 @@ namespace adios2 namespace utils { -Reorganize::Reorganize(int argc, char *argv[]) -: Utils("adios_reorganize", argc, argv) +Reorganize::Reorganize(int argc, char *argv[]) : Utils("adios_reorganize", argc, argv) { #if ADIOS2_USE_MPI { @@ -64,9 +63,8 @@ Reorganize::Reorganize(int argc, char *argv[]) if (argc < 7) { PrintUsage(); - helper::Throw( - "Utils", "AdiosReorganize", "Reorganize", - "Not enough arguments. At least 6 are required"); + helper::Throw("Utils", "AdiosReorganize", "Reorganize", + "Not enough arguments. At least 6 are required"); } infilename = std::string(argv[1]); outfilename = std::string(argv[2]); @@ -84,12 +82,10 @@ Reorganize::Reorganize(int argc, char *argv[]) decomp_values[nd] = std::strtol(argv[j], &end, 10); if (errno || (end != 0 && *end != '\0')) { - std::string errmsg( - "ERROR: Invalid decomposition number in argument " + - std::to_string(j) + ": '" + std::string(argv[j]) + "'\n"); + std::string errmsg("ERROR: Invalid decomposition number in argument " + + std::to_string(j) + ": '" + std::string(argv[j]) + "'\n"); PrintUsage(); - helper::Throw("Utils", "AdiosReorganize", - "Reorganize", errmsg); + helper::Throw("Utils", "AdiosReorganize", "Reorganize", errmsg); } nd++; j++; @@ -97,9 +93,8 @@ Reorganize::Reorganize(int argc, char *argv[]) if (argc > j) { - helper::Throw( - "Utils", "AdiosReorganize", "Reorganize", - "Up to 6 decomposition arguments are supported"); + helper::Throw("Utils", "AdiosReorganize", "Reorganize", + "Up to 6 decomposition arguments are supported"); } int prod = 1; @@ -113,12 +108,10 @@ Reorganize::Reorganize(int argc, char *argv[]) print0("ERROR: Product of decomposition numbers %d > number of " "processes %d\n", prod, m_Size); - std::string errmsg("ERROR: The product of decomposition numbers " + - std::to_string(prod) + " > number of processes " + - std::to_string(m_Size) + "\n"); + std::string errmsg("ERROR: The product of decomposition numbers " + std::to_string(prod) + + " > number of processes " + std::to_string(m_Size) + "\n"); PrintUsage(); - helper::Throw("Utils", "AdiosReorganize", - "Reorganize", errmsg); + helper::Throw("Utils", "AdiosReorganize", "Reorganize", errmsg); } } @@ -154,16 +147,14 @@ void Reorganize::Run() int curr_step = -1; while (true) { - adios2::StepStatus status = - rStream.BeginStep(adios2::StepMode::Read, 10.0); + adios2::StepStatus status = rStream.BeginStep(adios2::StepMode::Read, 10.0); if (status == adios2::StepStatus::NotReady) { if (handleAsStream) { if (!m_Rank) { - std::cout << " No new steps arrived in a while " - << std::endl; + std::cout << " No new steps arrived in a while " << std::endl; } continue; } @@ -171,13 +162,12 @@ void Reorganize::Run() { if (!m_Rank) { - std::cout - << " Timeout waiting for next step. If this is " - "a live stream through file, use a different " - "reading engine, like FileStream or BP4. " - "If it is an unclosed BP file, you may manually " - "close it with using adios_deactive_bp.sh." - << std::endl; + std::cout << " Timeout waiting for next step. If this is " + "a live stream through file, use a different " + "reading engine, like FileStream or BP4. " + "If it is an unclosed BP file, you may manually " + "close it with using adios_deactive_bp.sh." + << std::endl; } break; } @@ -192,9 +182,8 @@ void Reorganize::Run() if (rStream.CurrentStep() != static_cast(curr_step + 1)) { // we missed some steps - std::cout << "rank " << m_Rank << " WARNING: steps " << curr_step - << ".." << rStream.CurrentStep() - 1 - << "were missed when advancing." << std::endl; + std::cout << "rank " << m_Rank << " WARNING: steps " << curr_step << ".." + << rStream.CurrentStep() - 1 << "were missed when advancing." << std::endl; } curr_step = static_cast(rStream.CurrentStep()); @@ -288,32 +277,31 @@ void Reorganize::ProcessParameters() void Reorganize::PrintUsage() const noexcept { - std::cout - << "Usage: adios_reorganize input output rmethod \"params\" wmethod " - "\"params\" " - "\n" - " input Input stream path\n" - " output Output file path\n" - " rmethod ADIOS method to read with\n" - " Supported read methods: BPFile, HDF5, SST, SSC, " - "DataMan\n" - " params Read method parameters (in quotes; comma-separated " - "list)\n" - " wmethod ADIOS method to write with\n" - " params Write method parameters (in quotes; comma-separated " - "list)\n" - " list of numbers e.g. 32 8 4\n" - " Decomposition values in each dimension of an array\n" - " The product of these number must be less then the " - "number\n" - " of processes. Processes whose rank is higher than the\n" - " product, will not write anything.\n" - " Arrays with less dimensions than the number of " - "values,\n" - " will be decomposed with using the appropriate number " - "of\n" - " values." - << std::endl; + std::cout << "Usage: adios_reorganize input output rmethod \"params\" wmethod " + "\"params\" " + "\n" + " input Input stream path\n" + " output Output file path\n" + " rmethod ADIOS method to read with\n" + " Supported read methods: BPFile, HDF5, SST, SSC, " + "DataMan\n" + " params Read method parameters (in quotes; comma-separated " + "list)\n" + " wmethod ADIOS method to write with\n" + " params Write method parameters (in quotes; comma-separated " + "list)\n" + " list of numbers e.g. 32 8 4\n" + " Decomposition values in each dimension of an array\n" + " The product of these number must be less then the " + "number\n" + " of processes. Processes whose rank is higher than the\n" + " product, will not write anything.\n" + " Arrays with less dimensions than the number of " + "values,\n" + " will be decomposed with using the appropriate number " + "of\n" + " values." + << std::endl; } void Reorganize::PrintExamples() const noexcept {} @@ -357,9 +345,8 @@ std::string Reorganize::VectorToString(const T &v) return s; } -size_t -Reorganize::Decompose(int numproc, int rank, VarInfo &vi, - const int *np // number of processes in each dimension +size_t Reorganize::Decompose(int numproc, int rank, VarInfo &vi, + const int *np // number of processes in each dimension ) { size_t writesize = 0; @@ -439,14 +426,13 @@ Reorganize::Decompose(int numproc, int rank, VarInfo &vi, std::string ints = VectorToString(pos); if (pos[ndim - 1] >= np[ndim - 1]) { - std::cout << "rank " << rank << ": position in " << ndim - << "-D decomposition = " << ints + std::cout << "rank " << rank << ": position in " << ndim << "-D decomposition = " << ints << " ---> Out of bound process" << std::endl; } else { - std::cout << "rank " << rank << ": position in " << ndim - << "-D decomposition = " << ints << std::endl; + std::cout << "rank " << rank << ": position in " << ndim << "-D decomposition = " << ints + << std::endl; } /* Decompose each dimension according to the position */ @@ -475,16 +461,15 @@ Reorganize::Decompose(int numproc, int rank, VarInfo &vi, writesize *= count; } ints = VectorToString(vi.count); - std::cout << "rank " << rank << ": ldims in " << ndim << "-D space = {" - << ints << "}" << std::endl; + std::cout << "rank " << rank << ": ldims in " << ndim << "-D space = {" << ints << "}" + << std::endl; ints = VectorToString(vi.start); - std::cout << "rank " << rank << ": offsets in " << ndim << "-D space = {" - << ints << "}" << std::endl; + std::cout << "rank " << rank << ": offsets in " << ndim << "-D space = {" << ints << "}" + << std::endl; return writesize; } -int Reorganize::ProcessMetadata(core::Engine &rStream, core::IO &io, - const core::VarMap &variables, +int Reorganize::ProcessMetadata(core::Engine &rStream, core::IO &io, const core::VarMap &variables, const core::AttrMap &attributes, int step) { int retval = 0; @@ -507,17 +492,17 @@ int Reorganize::ProcessMetadata(core::Engine &rStream, core::IO &io, { // not supported } -#define declare_template_instantiation(T) \ - else if (type == helper::GetDataType()) \ - { \ - core::Variable *v = io.InquireVariable(variablePair.first); \ - if (v->m_ShapeID == adios2::ShapeID::LocalArray) \ - { \ - \ - auto blocks = rStream.BlocksInfo(*v, rStream.CurrentStep()); \ - nBlocks = blocks.size(); \ - } \ - variable = v; \ +#define declare_template_instantiation(T) \ + else if (type == helper::GetDataType()) \ + { \ + core::Variable *v = io.InquireVariable(variablePair.first); \ + if (v->m_ShapeID == adios2::ShapeID::LocalArray) \ + { \ + \ + auto blocks = rStream.BlocksInfo(*v, rStream.CurrentStep()); \ + nBlocks = blocks.size(); \ + } \ + variable = v; \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -555,11 +540,10 @@ int Reorganize::ProcessMetadata(core::Engine &rStream, core::IO &io, print0("\t local array "); if (nBlocks > 1) { - print0( - "ERROR: adios_reorganize does not support Local Arrays " - "except when there is only 1 written block in each " - "step. This one has ", - nBlocks, " blocks in this step "); + print0("ERROR: adios_reorganize does not support Local Arrays " + "except when there is only 1 written block in each " + "step. This one has ", + nBlocks, " blocks in this step "); return 1; } } @@ -570,8 +554,7 @@ int Reorganize::ProcessMetadata(core::Engine &rStream, core::IO &io, } // determine subset we will write - size_t sum_count = - Decompose(m_Size, m_Rank, varinfo[varidx], decomp_values); + size_t sum_count = Decompose(m_Size, m_Rank, varinfo[varidx], decomp_values); varinfo[varidx].writesize = sum_count * variable->m_ElementSize; if (varinfo[varidx].writesize != 0) @@ -589,14 +572,12 @@ int Reorganize::ProcessMetadata(core::Engine &rStream, core::IO &io, } // determine output buffer size - size_t bufsize = - write_total + variables.size() * 200 + attributes.size() * 32 + 1024; + size_t bufsize = write_total + variables.size() * 200 + attributes.size() * 32 + 1024; if (bufsize > max_write_buffer_size) { helper::Log("Util", "Reorganize", "ProcessMetadata", - "write buffer size needs to hold about " + - std::to_string(bufsize) + " bytes but max is set to " + - std::to_string(max_write_buffer_size), + "write buffer size needs to hold about " + std::to_string(bufsize) + + " bytes but max is set to " + std::to_string(max_write_buffer_size), m_Rank, m_Rank, 0, 0, helper::FATALERROR); return 1; } @@ -604,31 +585,27 @@ int Reorganize::ProcessMetadata(core::Engine &rStream, core::IO &io, if (largest_block > max_read_buffer_size) { helper::Log("Util", "Reorganize", "ProcessMetadata", - "read buffer size needs to hold at least " + - std::to_string(largest_block) + - " bytes but max is set to " + - std::to_string(max_read_buffer_size), + "read buffer size needs to hold at least " + std::to_string(largest_block) + + " bytes but max is set to " + std::to_string(max_read_buffer_size), m_Rank, m_Rank, 0, 0, helper::FATALERROR); return 1; } return retval; } -int Reorganize::ReadWrite(core::Engine &rStream, core::Engine &wStream, - core::IO &io, const core::VarMap &variables, int step) +int Reorganize::ReadWrite(core::Engine &rStream, core::Engine &wStream, core::IO &io, + const core::VarMap &variables, int step) { int retval = 0; size_t nvars = variables.size(); if (nvars != varinfo.size()) { - helper::Log( - "Util", "Reorganize", "ReadWrite", - "Invalid program state, number of variables (" + - std::to_string(nvars) + - ") to read does not match the number of processed variables (" + - std::to_string(varinfo.size()) + ")", - m_Rank, m_Rank, 0, 0, helper::FATALERROR); + helper::Log("Util", "Reorganize", "ReadWrite", + "Invalid program state, number of variables (" + std::to_string(nvars) + + ") to read does not match the number of processed variables (" + + std::to_string(varinfo.size()) + ")", + m_Rank, m_Rank, 0, 0, helper::FATALERROR); } /* @@ -643,30 +620,26 @@ int Reorganize::ReadWrite(core::Engine &rStream, core::Engine &wStream, if (varinfo[varidx].writesize != 0) { // read variable subset - std::cout << "rank " << m_Rank << ": Read variable " << name - << std::endl; + std::cout << "rank " << m_Rank << ": Read variable " << name << std::endl; const DataType type = variables.at(name)->m_Type; if (type == DataType::Struct) { // not supported } -#define declare_template_instantiation(T) \ - else if (type == helper::GetDataType()) \ - { \ - varinfo[varidx].readbuf = calloc(1, varinfo[varidx].writesize); \ - if (varinfo[varidx].count.size() == 0) \ - { \ - rStream.Get(name, \ - reinterpret_cast(varinfo[varidx].readbuf), \ - adios2::Mode::Sync); \ - } \ - else \ - { \ - varinfo[varidx].v->SetSelection( \ - {varinfo[varidx].start, varinfo[varidx].count}); \ - rStream.Get(name, \ - reinterpret_cast(varinfo[varidx].readbuf)); \ - } \ +#define declare_template_instantiation(T) \ + else if (type == helper::GetDataType()) \ + { \ + varinfo[varidx].readbuf = calloc(1, varinfo[varidx].writesize); \ + if (varinfo[varidx].count.size() == 0) \ + { \ + rStream.Get(name, reinterpret_cast(varinfo[varidx].readbuf), \ + adios2::Mode::Sync); \ + } \ + else \ + { \ + varinfo[varidx].v->SetSelection({varinfo[varidx].start, varinfo[varidx].count}); \ + rStream.Get(name, reinterpret_cast(varinfo[varidx].readbuf)); \ + } \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -687,35 +660,30 @@ int Reorganize::ReadWrite(core::Engine &rStream, core::Engine &wStream, if (varinfo[varidx].writesize != 0) { // Write variable subset - std::cout << "rank " << m_Rank << ": Write variable " << name - << std::endl; + std::cout << "rank " << m_Rank << ": Write variable " << name << std::endl; const DataType type = variables.at(name)->m_Type; if (type == DataType::Struct) { // not supported } -#define declare_template_instantiation(T) \ - else if (type == helper::GetDataType()) \ - { \ - if (varinfo[varidx].count.size() == 0) \ - { \ - wStream.Put(name, \ - reinterpret_cast(varinfo[varidx].readbuf), \ - adios2::Mode::Sync); \ - } \ - else if (varinfo[varidx].v->m_ShapeID == adios2::ShapeID::LocalArray) \ - { \ - wStream.Put(name, \ - reinterpret_cast(varinfo[varidx].readbuf), \ - adios2::Mode::Sync); \ - } \ - else \ - { \ - varinfo[varidx].v->SetSelection( \ - {varinfo[varidx].start, varinfo[varidx].count}); \ - wStream.Put(name, \ - reinterpret_cast(varinfo[varidx].readbuf)); \ - } \ +#define declare_template_instantiation(T) \ + else if (type == helper::GetDataType()) \ + { \ + if (varinfo[varidx].count.size() == 0) \ + { \ + wStream.Put(name, reinterpret_cast(varinfo[varidx].readbuf), \ + adios2::Mode::Sync); \ + } \ + else if (varinfo[varidx].v->m_ShapeID == adios2::ShapeID::LocalArray) \ + { \ + wStream.Put(name, reinterpret_cast(varinfo[varidx].readbuf), \ + adios2::Mode::Sync); \ + } \ + else \ + { \ + varinfo[varidx].v->SetSelection({varinfo[varidx].start, varinfo[varidx].count}); \ + wStream.Put(name, reinterpret_cast(varinfo[varidx].readbuf)); \ + } \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation diff --git a/source/utils/adios_reorganize/Reorganize.h b/source/utils/adios_reorganize/Reorganize.h index 51f2600993..4c8ffab6fd 100644 --- a/source/utils/adios_reorganize/Reorganize.h +++ b/source/utils/adios_reorganize/Reorganize.h @@ -26,7 +26,7 @@ struct VarInfo std::string type; Dims start; Dims count; - size_t writesize = 0; // size of subset this process writes, 0: do not write + size_t writesize = 0; // size of subset this process writes, 0: do not write void *readbuf = nullptr; // read in buffer }; @@ -60,8 +60,7 @@ class Reorganize : public Utils size_t Decompose(int numproc, int rank, VarInfo &vi, const int *np // number of processes in each dimension ); - int ProcessMetadata(core::Engine &rStream, core::IO &io, - const core::VarMap &variables, + int ProcessMetadata(core::Engine &rStream, core::IO &io, const core::VarMap &variables, const core::AttrMap &attributes, int step); int ReadWrite(core::Engine &rStream, core::Engine &wStream, core::IO &io, const core::VarMap &variables, int step); diff --git a/source/utils/bpls/bpls.cpp b/source/utils/bpls/bpls.cpp index fe591d5e08..c7e6e166cc 100644 --- a/source/utils/bpls/bpls.cpp +++ b/source/utils/bpls/bpls.cpp @@ -73,17 +73,16 @@ using EntryMap = std::map; // output files' starting path (can be extended with subdirs, // names, indexes) std::string outpath; -char *varmask[MAX_MASKS]; // can have many -var masks (either shell patterns or - // extended regular expressions) -int nmasks; // number of masks specified -char *vfile; // file name to bpls -std::string start; // dimension spec starting points -std::string count; // dimension spec counts -std::string format; // format string for one data element (e.g. %6.2f) -std::string - transport_params; // Transport parameters (e.g. "Library=stdio,verbose=3") -std::string engine_name; // Engine name (e.g. "BP5") -std::string engine_params; // Engine parameters (e.g. "SelectSteps=0:5:2") +char *varmask[MAX_MASKS]; // can have many -var masks (either shell patterns or + // extended regular expressions) +int nmasks; // number of masks specified +char *vfile; // file name to bpls +std::string start; // dimension spec starting points +std::string count; // dimension spec counts +std::string format; // format string for one data element (e.g. %6.2f) +std::string transport_params; // Transport parameters (e.g. "Library=stdio,verbose=3") +std::string engine_name; // Engine name (e.g. "BP5") +std::string engine_params; // Engine parameters (e.g. "SelectSteps=0:5:2") // Flags from arguments or defaults bool dump; // dump data not just list info(flag == 1) @@ -123,82 +122,81 @@ char commentchar; void display_help() { // printf( "Usage: %s \n", prgname); - printf( - "usage: bpls [OPTIONS] file [mask1 mask2 ...]\n" - "\nList/dump content of a BP/HDF5 file. \n" - "A mask can be a shell pattern like with 'ls' e.g. \"*/x?\".\n" - "Variables with multiple timesteps are reported with an extra " - "dimensions.\n" - "The time dimension is the first dimension then.\n" - "\n" - " --long | -l Print values of all scalars and " - "attributes and\n" - " min/max values of arrays (no overhead " - "to get them!)\n" - " --attrs | -a List/match attributes too\n" - " --attrsonly | -A List attributes only\n" - " --meshes | -m List meshes\n" - /* - " --sort | -r Sort names before listing\n" - */ - " --timestep | -t Read content step by step (stream " - "reading)\n" - " --dump | -d Dump matched variables/attributes\n" - " To match attributes too, add option " - "-a\n" - " --regexp | -e Treat masks as extended regular " - "expressions\n" - " --output | -o Print to a file instead of stdout\n" - /* - " --xml | -x # print as xml instead of ascii text\n" - */ - " --start | -s \"spec\" Offset indices in each dimension \n" - " (default is 0 for all dimensions) \n" - " <0 is handled as in python (-1 is " - "last)\n" - " --count | -c \"spec\" Number of elements in each dimension\n" - " -1 denotes 'until end' of dimension\n" - " (default is -1 for all dimensions)\n" - " --noindex | -y Print data without array indices\n" - " --string | -S Print 8bit integer arrays as strings\n" - " --columns | -n \"cols\" Number of data elements per row to " - "print\n" - " --format | -f \"str\" Format string to use for one data item " - "in print\n" - " instead of the default. E.g. " - "\"%%6.3f\"\n" - " --hidden_attrs Show hidden ADIOS attributes in the " - "file\n" - " --decomp | -D Show decomposition of variables as layed " - "out in file\n" - " --transport-parameters | -T Specify File transport " - "parameters\n" - " e.g. \"Library=stdio\"\n" - " --engine | -E Specify ADIOS Engine\n" - " --engine-params | -P string Specify ADIOS Engine " - "Parameters\n" - " e.g. \"SelectSteps=0:n:2\"" - "\n" - " Examples for slicing:\n" - " -s \"0,0,0\" -c \"1,99,1\": Print 100 elements (of the 2nd " - "dimension).\n" - " -s \"0,0\" -c \"1,-1\": Print the whole 2nd dimension " - "however large it is.\n" - " -s \"-1,-1\" -c \"1,1\": Print the very last element (of a 2D " - "array)\n" - "\n" - "Help options\n" - " --help | -h Print this help.\n" - " --verbose | -v Print log about what this program is " - "doing.\n" - " Use multiple -v to increase logging " - "level.\n" - " --version | -V Print version information; compatible " - " with\n" - " --verbose for additional information, " - "i.e.\n" - " -v --version.\n" - "\nTypical use: bpls -lav \n"); + printf("usage: bpls [OPTIONS] file [mask1 mask2 ...]\n" + "\nList/dump content of a BP/HDF5 file. \n" + "A mask can be a shell pattern like with 'ls' e.g. \"*/x?\".\n" + "Variables with multiple timesteps are reported with an extra " + "dimensions.\n" + "The time dimension is the first dimension then.\n" + "\n" + " --long | -l Print values of all scalars and " + "attributes and\n" + " min/max values of arrays (no overhead " + "to get them!)\n" + " --attrs | -a List/match attributes too\n" + " --attrsonly | -A List attributes only\n" + " --meshes | -m List meshes\n" + /* + " --sort | -r Sort names before listing\n" + */ + " --timestep | -t Read content step by step (stream " + "reading)\n" + " --dump | -d Dump matched variables/attributes\n" + " To match attributes too, add option " + "-a\n" + " --regexp | -e Treat masks as extended regular " + "expressions\n" + " --output | -o Print to a file instead of stdout\n" + /* + " --xml | -x # print as xml instead of ascii text\n" + */ + " --start | -s \"spec\" Offset indices in each dimension \n" + " (default is 0 for all dimensions) \n" + " <0 is handled as in python (-1 is " + "last)\n" + " --count | -c \"spec\" Number of elements in each dimension\n" + " -1 denotes 'until end' of dimension\n" + " (default is -1 for all dimensions)\n" + " --noindex | -y Print data without array indices\n" + " --string | -S Print 8bit integer arrays as strings\n" + " --columns | -n \"cols\" Number of data elements per row to " + "print\n" + " --format | -f \"str\" Format string to use for one data item " + "in print\n" + " instead of the default. E.g. " + "\"%%6.3f\"\n" + " --hidden_attrs Show hidden ADIOS attributes in the " + "file\n" + " --decomp | -D Show decomposition of variables as layed " + "out in file\n" + " --transport-parameters | -T Specify File transport " + "parameters\n" + " e.g. \"Library=stdio\"\n" + " --engine | -E Specify ADIOS Engine\n" + " --engine-params | -P string Specify ADIOS Engine " + "Parameters\n" + " e.g. \"SelectSteps=0:n:2\"" + "\n" + " Examples for slicing:\n" + " -s \"0,0,0\" -c \"1,99,1\": Print 100 elements (of the 2nd " + "dimension).\n" + " -s \"0,0\" -c \"1,-1\": Print the whole 2nd dimension " + "however large it is.\n" + " -s \"-1,-1\" -c \"1,1\": Print the very last element (of a 2D " + "array)\n" + "\n" + "Help options\n" + " --help | -h Print this help.\n" + " --verbose | -v Print log about what this program is " + "doing.\n" + " Use multiple -v to increase logging " + "level.\n" + " --version | -V Print version information; compatible " + " with\n" + " --verbose for additional information, " + "i.e.\n" + " -v --version.\n" + "\nTypical use: bpls -lav \n"); } bool option_help_was_called = false; @@ -231,8 +229,7 @@ void print_bpls_version() printf("\nBuild configuration:\n"); if (strlen(ADIOS_INFO_VER_GIT) > 0) { - printf("ADIOS version: %s (%s)\n", ADIOS2_VERSION_STR, - ADIOS_INFO_VER_GIT); + printf("ADIOS version: %s (%s)\n", ADIOS2_VERSION_STR, ADIOS_INFO_VER_GIT); } else { @@ -240,13 +237,12 @@ void print_bpls_version() } if (strlen(ADIOS_INFO_COMPILER_WRAP) > 0) { - printf("C++ Compiler: %s %s (%s)\n", ADIOS_INFO_COMPILER_ID, - ADIOS_INFO_COMPILER_VER, ADIOS_INFO_COMPILER_WRAP); + printf("C++ Compiler: %s %s (%s)\n", ADIOS_INFO_COMPILER_ID, ADIOS_INFO_COMPILER_VER, + ADIOS_INFO_COMPILER_WRAP); } else { - printf("C++ Compiler: %s %s\n", ADIOS_INFO_COMPILER_ID, - ADIOS_INFO_COMPILER_VER); + printf("C++ Compiler: %s %s\n", ADIOS_INFO_COMPILER_ID, ADIOS_INFO_COMPILER_VER); } printf("Target OS: %s\n", ADIOS_INFO_SYSTEM); printf("Target Arch: %s\n", ADIOS_INFO_ARCH); @@ -305,14 +301,11 @@ bool introspectAsBPFile(std::ifstream &f, const std::string &name) noexcept if (!IsBigEndian) { - uint64_t PGIndexStart = - helper::ReadValue(buffer, position, !IsBigEndian); - uint64_t VarsIndexStart = - helper::ReadValue(buffer, position, !IsBigEndian); + uint64_t PGIndexStart = helper::ReadValue(buffer, position, !IsBigEndian); + uint64_t VarsIndexStart = helper::ReadValue(buffer, position, !IsBigEndian); uint64_t AttributesIndexStart = helper::ReadValue(buffer, position, !IsBigEndian); - if (PGIndexStart >= VarsIndexStart || - VarsIndexStart >= AttributesIndexStart || + if (PGIndexStart >= VarsIndexStart || VarsIndexStart >= AttributesIndexStart || AttributesIndexStart >= static_cast(flength)) { return false; @@ -338,15 +331,13 @@ bool introspectAsBPFile(std::ifstream &f, const std::string &name) noexcept /* Cleanup ADIOS2 bug here: VersionTag is not filled with 0s */ int pos = 10; - while (VersionTag[pos] == '.' || - (VersionTag[pos] >= '0' && VersionTag[pos] <= '9')) + while (VersionTag[pos] == '.' || (VersionTag[pos] >= '0' && VersionTag[pos] <= '9')) { ++pos; } VersionTag[pos] = '\0'; printf("ADIOS-BP Version %d %s - ADIOS v%d.%d.%d\n", BPVersion, - (IsBigEndian ? "Big Endian" : "Little Endian"), major, minor, - patch); + (IsBigEndian ? "Big Endian" : "Little Endian"), major, minor, patch); } } return true; @@ -410,22 +401,22 @@ bool introspectAsBPDir(const std::string &name) noexcept { isActive = static_cast(buffer[38]); printf("ADIOS-BP Version %d %s - ADIOS v%c.%c.%c %s\n", BPVersion, - (isBigEndian ? "Big Endian" : "Little Endian"), major, minor, - patch, (isActive ? "- active" : "")); + (isBigEndian ? "Big Endian" : "Little Endian"), major, minor, patch, + (isActive ? "- active" : "")); } else if (BPVersion == 5) { uint8_t minversion = static_cast(buffer[38]); isActive = static_cast(buffer[39]); - printf("ADIOS-BP Version %d.%d %s - ADIOS v%c.%c.%c %s\n", BPVersion, - minversion, (isBigEndian ? "Big Endian" : "Little Endian"), - major, minor, patch, (isActive ? "- active" : "")); + printf("ADIOS-BP Version %d.%d %s - ADIOS v%c.%c.%c %s\n", BPVersion, minversion, + (isBigEndian ? "Big Endian" : "Little Endian"), major, minor, patch, + (isActive ? "- active" : "")); } else { printf("ADIOS-BP Version %d %s - ADIOS v%c.%c.%c %s\n", BPVersion, - (isBigEndian ? "Big Endian" : "Little Endian"), major, minor, - patch, (isActive ? "- active" : "")); + (isBigEndian ? "Big Endian" : "Little Endian"), major, minor, patch, + (isActive ? "- active" : "")); } return true; @@ -552,13 +543,11 @@ int bplsMain(int argc, char *argv[]) "Print information about what bpls is doing"); arg.AddCallback("--help", argT::NO_ARGUMENT, optioncb_help, &arg, "Help"); arg.AddCallback("-h", argT::NO_ARGUMENT, optioncb_help, &arg, ""); - arg.AddBooleanArgument("--dump", &dump, - "Dump matched variables/attributes"); + arg.AddBooleanArgument("--dump", &dump, "Dump matched variables/attributes"); arg.AddBooleanArgument("-d", &dump, ""); - arg.AddBooleanArgument( - "--long", &longopt, - "Print values of all scalars and attributes and min/max " - "values of arrays"); + arg.AddBooleanArgument("--long", &longopt, + "Print values of all scalars and attributes and min/max " + "values of arrays"); arg.AddBooleanArgument("-l", &longopt, ""); arg.AddBooleanArgument("--regexp", &use_regexp, "| -e Treat masks as extended regular expressions"); @@ -576,14 +565,11 @@ int bplsMain(int argc, char *argv[]) "denotes 'until end' of dimension. default is -1 for all " "dimensions"); arg.AddArgument("-c", argT::SPACE_ARGUMENT, &count, ""); - arg.AddBooleanArgument("--noindex", &noindex, - " | -y Print data without array indices"); + arg.AddBooleanArgument("--noindex", &noindex, " | -y Print data without array indices"); arg.AddBooleanArgument("-y", &noindex, ""); - arg.AddBooleanArgument("--timestep", ×tep, - " | -t Print values of timestep elements"); + arg.AddBooleanArgument("--timestep", ×tep, " | -t Print values of timestep elements"); arg.AddBooleanArgument("-t", ×tep, ""); - arg.AddBooleanArgument("--attrs", &listattrs, - " | -a List/match attributes too"); + arg.AddBooleanArgument("--attrs", &listattrs, " | -a List/match attributes too"); arg.AddBooleanArgument("-a", &listattrs, ""); arg.AddBooleanArgument("--attrsonly", &attrsonly, " | -A List/match attributes only (no variables)"); @@ -601,18 +587,15 @@ int bplsMain(int argc, char *argv[]) arg.AddArgument("-f", argT::SPACE_ARGUMENT, &format, ""); arg.AddBooleanArgument("--hidden_attrs", &hidden_attrs, " Show hidden ADIOS attributes in the file"); - arg.AddBooleanArgument( - "--decompose", &show_decomp, - "| -D Show decomposition of variables as layed out in file"); + arg.AddBooleanArgument("--decompose", &show_decomp, + "| -D Show decomposition of variables as layed out in file"); arg.AddBooleanArgument("-D", &show_decomp, ""); - arg.AddBooleanArgument( - "--version", &show_version, - "Print version information (add -verbose for additional" - " information)"); + arg.AddBooleanArgument("--version", &show_version, + "Print version information (add -verbose for additional" + " information)"); arg.AddBooleanArgument("-V", &show_version, ""); - arg.AddArgument( - "--transport-parameters", argT::SPACE_ARGUMENT, &transport_params, - "| -T string Specify File transport parameters manually"); + arg.AddArgument("--transport-parameters", argT::SPACE_ARGUMENT, &transport_params, + "| -T string Specify File transport parameters manually"); arg.AddArgument("-T", argT::SPACE_ARGUMENT, &transport_params, ""); arg.AddArgument("--engine", argT::SPACE_ARGUMENT, &engine_name, "| -E string Specify ADIOS Engine manually"); @@ -748,28 +731,28 @@ void init_globals() ndimsspecified = 0; } -#define PRINT_DIMS_INT(str, v, n, loopvar) \ - printf("%s = { ", str); \ - for (loopvar = 0; loopvar < n; loopvar++) \ - printf("%d ", v[loopvar]); \ +#define PRINT_DIMS_INT(str, v, n, loopvar) \ + printf("%s = { ", str); \ + for (loopvar = 0; loopvar < n; loopvar++) \ + printf("%d ", v[loopvar]); \ printf("}") -#define PRINT_DIMS_UINT64(str, v, n, loopvar) \ - printf("%s = { ", str); \ - for (loopvar = 0; loopvar < n; loopvar++) \ - printf("%" PRIu64 " ", v[loopvar]); \ +#define PRINT_DIMS_UINT64(str, v, n, loopvar) \ + printf("%s = { ", str); \ + for (loopvar = 0; loopvar < n; loopvar++) \ + printf("%" PRIu64 " ", v[loopvar]); \ printf("}") -#define PRINT_DIMS_INT64(str, v, n, loopvar) \ - printf("%s = { ", str); \ - for (loopvar = 0; loopvar < n; loopvar++) \ - printf("%" PRId64 " ", v[loopvar]); \ +#define PRINT_DIMS_INT64(str, v, n, loopvar) \ + printf("%s = { ", str); \ + for (loopvar = 0; loopvar < n; loopvar++) \ + printf("%" PRId64 " ", v[loopvar]); \ printf("}") -#define PRINT_DIMS_SIZET(str, v, n, loopvar) \ - printf("%s = { ", str); \ - for (loopvar = 0; loopvar < n; loopvar++) \ - printf("%zu ", v[loopvar]); \ +#define PRINT_DIMS_SIZET(str, v, n, loopvar) \ + printf("%s = { ", str); \ + for (loopvar = 0; loopvar < n; loopvar++) \ + printf("%zu ", v[loopvar]); \ printf("}") void printSettings(void) @@ -855,14 +838,12 @@ static inline int ndigits(size_t n) } template -int printAttributeValue(core::Engine *fp, core::IO *io, - core::Attribute *attribute) +int printAttributeValue(core::Engine *fp, core::IO *io, core::Attribute *attribute) { DataType adiosvartype = attribute->m_Type; if (attribute->m_IsSingleValue) { - print_data((void *)&attribute->m_DataSingleValue, 0, adiosvartype, - true); + print_data((void *)&attribute->m_DataSingleValue, 0, adiosvartype, true); } else { @@ -870,8 +851,7 @@ int printAttributeValue(core::Engine *fp, core::IO *io, size_t nelems = attribute->m_DataArray.size(); for (size_t j = 0; j < nelems; j++) { - print_data((void *)&attribute->m_DataArray[j], 0, adiosvartype, - true); + print_data((void *)&attribute->m_DataArray[j], 0, adiosvartype, true); if (j < nelems - 1) { fprintf(outf, ", "); @@ -883,8 +863,7 @@ int printAttributeValue(core::Engine *fp, core::IO *io, } template <> -int printAttributeValue(core::Engine *fp, core::IO *io, - core::Attribute *attribute) +int printAttributeValue(core::Engine *fp, core::IO *io, core::Attribute *attribute) { DataType adiosvartype = attribute->m_Type; bool xmlprint = helper::EndsWith(attribute->m_Name, "xml", false); @@ -894,14 +873,12 @@ int printAttributeValue(core::Engine *fp, core::IO *io, { if (xmlprint) { - printDataAnyway = - print_data_xml(attribute->m_DataSingleValue.data(), - attribute->m_DataSingleValue.length()); + printDataAnyway = print_data_xml(attribute->m_DataSingleValue.data(), + attribute->m_DataSingleValue.length()); } if (printDataAnyway) { - print_data((void *)&attribute->m_DataSingleValue, 0, adiosvartype, - true); + print_data((void *)&attribute->m_DataSingleValue, 0, adiosvartype, true); } } else @@ -912,14 +889,12 @@ int printAttributeValue(core::Engine *fp, core::IO *io, { if (xmlprint) { - printDataAnyway = - print_data_xml(attribute->m_DataArray[j].data(), - attribute->m_DataArray[j].length()); + printDataAnyway = print_data_xml(attribute->m_DataArray[j].data(), + attribute->m_DataArray[j].length()); } if (printDataAnyway) { - print_data((void *)&attribute->m_DataArray[j], 0, adiosvartype, - true); + print_data((void *)&attribute->m_DataArray[j], 0, adiosvartype, true); } if (j < nelems - 1) { @@ -1008,14 +983,13 @@ int doList_vars(core::Engine *fp, core::IO *io) { // not supported } -#define declare_template_instantiation(T) \ - else if (entry.typeName == helper::GetDataType()) \ - { \ - core::Attribute *a = static_cast *>(entry.attr); \ - retval = printAttributeValue(fp, io, a); \ - } - ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG( - declare_template_instantiation) +#define declare_template_instantiation(T) \ + else if (entry.typeName == helper::GetDataType()) \ + { \ + core::Attribute *a = static_cast *>(entry.attr); \ + retval = printAttributeValue(fp, io, a); \ + } + ADIOS2_FOREACH_ATTRIBUTE_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation fprintf(outf, "\n"); matches = false; // already printed @@ -1031,11 +1005,11 @@ int doList_vars(core::Engine *fp, core::IO *io) { // not supported } -#define declare_template_instantiation(T) \ - else if (entry.typeName == helper::GetDataType()) \ - { \ - core::Variable *v = static_cast *>(entry.var); \ - retval = printVariableInfo(fp, io, v); \ +#define declare_template_instantiation(T) \ + else if (entry.typeName == helper::GetDataType()) \ + { \ + core::Variable *v = static_cast *>(entry.var); \ + retval = printVariableInfo(fp, io, v); \ } ADIOS2_FOREACH_STDTYPE_1ARG(declare_template_instantiation) #undef declare_template_instantiation @@ -1051,8 +1025,7 @@ int doList_vars(core::Engine *fp, core::IO *io) } template -int printVariableInfo(core::Engine *fp, core::IO *io, - core::Variable *variable) +int printVariableInfo(core::Engine *fp, core::IO *io, core::Variable *variable) { size_t nsteps = variable->GetAvailableStepsCount(); if (timestep) @@ -1076,29 +1049,22 @@ int printVariableInfo(core::Engine *fp, core::IO *io, if (variable->m_ShapeID == ShapeID::GlobalArray) { Dims d = get_global_array_signature(fp, io, variable); - fprintf(outf, "{%s", - d[0] > 0 ? std::to_string(d[0]).c_str() : "__"); + fprintf(outf, "{%s", d[0] > 0 ? std::to_string(d[0]).c_str() : "__"); for (size_t j = 1; j < variable->m_Shape.size(); j++) { - fprintf(outf, ", %s", - d[j] > 0 ? std::to_string(d[j]).c_str() : "__"); + fprintf(outf, ", %s", d[j] > 0 ? std::to_string(d[j]).c_str() : "__"); } fprintf(outf, "}"); } else if (variable->m_ShapeID == ShapeID::LocalArray) { - std::pair signo = - get_local_array_signature(fp, io, variable); + std::pair signo = get_local_array_signature(fp, io, variable); Dims &d = signo.second; - fprintf(outf, "[%s]*", - signo.first > 0 ? std::to_string(signo.first).c_str() - : "__"); - fprintf(outf, "{%s", - d[0] > 0 ? std::to_string(d[0]).c_str() : "__"); + fprintf(outf, "[%s]*", signo.first > 0 ? std::to_string(signo.first).c_str() : "__"); + fprintf(outf, "{%s", d[0] > 0 ? std::to_string(d[0]).c_str() : "__"); for (size_t j = 1; j < variable->m_Count.size(); j++) { - fprintf(outf, ", %s", - d[j] > 0 ? std::to_string(d[j]).c_str() : "__"); + fprintf(outf, ", %s", d[j] > 0 ? std::to_string(d[j]).c_str() : "__"); } fprintf(outf, "}"); } @@ -1285,36 +1251,36 @@ int printVariableInfo(core::Engine *fp, core::IO *io, return retval; } -#define PRINT_ARRAY(str, ndim, dims, loopvar, format) \ - fprintf(outf, "%s", str); \ - if (ndim > 0) \ - { \ - fprintf(outf, "{%" #format, dims[0]); \ - for (loopvar = 1; loopvar < ndim; loopvar++) \ - { \ - fprintf(outf, ", %" #format, dims[loopvar]); \ - } \ - fprintf(outf, "}\n"); \ - } \ - else \ - { \ - fprintf(outf, "empty\n"); \ - } - -#define PRINT_ARRAY64(str, ndim, dims, loopvar) \ - fprintf(outf, "%s", str); \ - if (ndim > 0) \ - { \ - fprintf(outf, "{%" PRIu64, dims[0]); \ - for (loopvar = 1; loopvar < ndim; loopvar++) \ - { \ - fprintf(outf, ", %" PRIu64, dims[loopvar]); \ - } \ - fprintf(outf, "}\n"); \ - } \ - else \ - { \ - fprintf(outf, "empty\n"); \ +#define PRINT_ARRAY(str, ndim, dims, loopvar, format) \ + fprintf(outf, "%s", str); \ + if (ndim > 0) \ + { \ + fprintf(outf, "{%" #format, dims[0]); \ + for (loopvar = 1; loopvar < ndim; loopvar++) \ + { \ + fprintf(outf, ", %" #format, dims[loopvar]); \ + } \ + fprintf(outf, "}\n"); \ + } \ + else \ + { \ + fprintf(outf, "empty\n"); \ + } + +#define PRINT_ARRAY64(str, ndim, dims, loopvar) \ + fprintf(outf, "%s", str); \ + if (ndim > 0) \ + { \ + fprintf(outf, "{%" PRIu64, dims[0]); \ + for (loopvar = 1; loopvar < ndim; loopvar++) \ + { \ + fprintf(outf, ", %" PRIu64, dims[loopvar]); \ + } \ + fprintf(outf, "}\n"); \ + } \ + else \ + { \ + fprintf(outf, "empty\n"); \ } void printMeshes(core::Engine *fp) @@ -1534,18 +1500,16 @@ int doList(const char *path) printf("\nADIOS Open: read header info from %s\n", path); std::string tpl = helper::LowerCase(transport_params); - bool remoteFile = (tpl.find("awssdk") != std::string::npos) || - (tpl.find("daos") != std::string::npos); + bool remoteFile = + (tpl.find("awssdk") != std::string::npos) || (tpl.find("daos") != std::string::npos); if (remoteFile) { if (engine_name.empty()) { - fprintf( - stderr, - "\nError: For remote file access you must specify the engine " - "explicitly with -E parameter, e.g. -E bp5 or -E bp4 or -E " - "bp3.\nVirtual engines like BPFile or FileStream do not know " - "which engine to use.\n"); + fprintf(stderr, "\nError: For remote file access you must specify the engine " + "explicitly with -E parameter, e.g. -E bp5 or -E bp4 or -E " + "bp3.\nVirtual engines like BPFile or FileStream do not know " + "which engine to use.\n"); return 8; } } @@ -1620,8 +1584,7 @@ int doList(const char *path) } catch (std::exception &e) { - printf("Failed to open with %s engine: %s\n", engineName.c_str(), - e.what()); + printf("Failed to open with %s engine: %s\n", engineName.c_str(), e.what()); } if (fp != nullptr) break; @@ -1664,22 +1627,19 @@ int doList(const char *path) { while (true) { - adios2::StepStatus status = - fp->BeginStep(adios2::StepMode::Read); + adios2::StepStatus status = fp->BeginStep(adios2::StepMode::Read); if (status == adios2::StepStatus::EndOfStream) { break; } else if (status == adios2::StepStatus::NotReady) { - std::this_thread::sleep_for( - std::chrono::milliseconds(1000)); + std::this_thread::sleep_for(std::chrono::milliseconds(1000)); continue; } else if (status == adios2::StepStatus::OtherError) { - fprintf(stderr, - "\nError: Cannot read more steps due to errors\n"); + fprintf(stderr, "\nError: Cannot read more steps due to errors\n"); break; } fprintf(stdout, "Step %zu:\n", fp->CurrentStep()); @@ -1694,9 +1654,8 @@ int doList(const char *path) if (nmasks > 0 && nEntriesMatched == 0) { - fprintf(stderr, - "\nError: None of the variables/attributes matched any " - "name/regexp you provided\n"); + fprintf(stderr, "\nError: None of the variables/attributes matched any " + "name/regexp you provided\n"); return 4; } fp->Close(); @@ -1788,8 +1747,7 @@ int cmpstringp(const void *p1, const void *p2) otherwise just return listV. If sortnames=true, quicksort the result list. */ -void mergeLists(int nV, char **listV, int nA, char **listA, char **mlist, - bool *isVar) +void mergeLists(int nV, char **listV, int nA, char **listA, char **mlist, bool *isVar) { int v, a, idx; if (sortnames && listattrs && !attrsonly) @@ -1916,16 +1874,15 @@ int readVar(core::Engine *fp, core::IO *io, core::Variable *variable) // size_t elemsize; // size in bytes of one element uint64_t stepStart, stepCount; std::vector dataV; - uint64_t sum; // working var to sum up things - uint64_t maxreadn; // max number of elements to read once up to a limit - // (10MB of data) - uint64_t actualreadn; // our decision how much to read at once + uint64_t sum; // working var to sum up things + uint64_t maxreadn; // max number of elements to read once up to a limit + // (10MB of data) + uint64_t actualreadn; // our decision how much to read at once uint64_t readn[MAX_DIMS]; // how big chunk to read in in each dimension? int ndigits_dims[32]; // # of digits (to print) of each dimension const size_t elemsize = variable->m_ElementSize; - const int nsteps = - (timestep ? 1 : static_cast(variable->GetAvailableStepsCount())); + const int nsteps = (timestep ? 1 : static_cast(variable->GetAvailableStepsCount())); const int ndim = static_cast(variable->m_Shape.size()); // create the counter arrays with the appropriate lengths // transfer start and count arrays to format dependent arrays @@ -1949,13 +1906,12 @@ int readVar(core::Engine *fp, core::IO *io, core::Variable *variable) stepCount = icount[0]; if (verbose > 2) - printf(" j=0, stepStart=%" PRIu64 " stepCount=%" PRIu64 "\n", - stepStart, stepCount); + printf(" j=0, stepStart=%" PRIu64 " stepCount=%" PRIu64 "\n", stepStart, stepCount); if (stepStart + stepCount > static_cast(nsteps)) { - printf("ERROR: The sum of start step (%" PRIu64 - ") and step count (%" PRIu64 ") is larger " + printf("ERROR: The sum of start step (%" PRIu64 ") and step count (%" PRIu64 + ") is larger " "than the number of steps available (%d)\n", stepStart, stepCount, nsteps); return -1; @@ -1965,8 +1921,8 @@ int readVar(core::Engine *fp, core::IO *io, core::Variable *variable) count_t[0] = stepCount; nelems *= stepCount; if (verbose > 1) - printf(" s[0]=%" PRIu64 ", c[0]=%" PRIu64 ", n=%" PRIu64 "\n", - start_t[0], count_t[0], nelems); + printf(" s[0]=%" PRIu64 ", c[0]=%" PRIu64 ", n=%" PRIu64 "\n", start_t[0], + count_t[0], nelems); tidx = 1; } @@ -2048,22 +2004,19 @@ int readVar(core::Engine *fp, core::IO *io, core::Variable *variable) ct = icount[j + tidx]; if (verbose > 2) - printf(" j=%d, st=%" PRIu64 " ct=%" PRIu64 "\n", j + tidx, st, - ct); + printf(" j=%d, st=%" PRIu64 " ct=%" PRIu64 "\n", j + tidx, st, ct); start_t[j + tidx] = st; count_t[j + tidx] = ct; nelems *= ct; if (verbose > 1) - printf(" s[%d]=%" PRIu64 ", c[%d]=%" PRIu64 ", n=%" PRIu64 "\n", - j + tidx, start_t[j + tidx], j + tidx, count_t[j + tidx], - nelems); + printf(" s[%d]=%" PRIu64 ", c[%d]=%" PRIu64 ", n=%" PRIu64 "\n", j + tidx, + start_t[j + tidx], j + tidx, count_t[j + tidx], nelems); } if (verbose > 1) { - printf(" total size of data to read = %" PRIu64 "\n", - nelems * elemsize); + printf(" total size of data to read = %" PRIu64 "\n", nelems * elemsize); } print_slice_info(variable, (tidx == 1), start_t, count_t, shape); @@ -2115,8 +2068,7 @@ int readVar(core::Engine *fp, core::IO *io, core::Variable *variable) actualreadn = actualreadn * readn[i]; } if (verbose > 1) - printf(" read %" PRIu64 " elements at once, %" PRIu64 - " in total (nelems=%" PRIu64 ")\n", + printf(" read %" PRIu64 " elements at once, %" PRIu64 " in total (nelems=%" PRIu64 ")\n", actualreadn, sum, nelems); // init s and c @@ -2126,8 +2078,8 @@ int readVar(core::Engine *fp, core::IO *io, core::Variable *variable) s[j] = start_t[j]; c[j] = readn[j]; - ndigits_dims[j] = ndigits(start_t[j] + count_t[j] - - 1); // -1: dim=100 results in 2 digits (0..99) + ndigits_dims[j] = + ndigits(start_t[j] + count_t[j] - 1); // -1: dim=100 results in 2 digits (0..99) } // read until read all 'nelems' elements @@ -2149,14 +2101,12 @@ int readVar(core::Engine *fp, core::IO *io, core::Variable *variable) } // read a slice finally - const Dims startv = - variable->m_ShapeID == ShapeID::GlobalArray - ? helper::Uint64ArrayToSizetVector(tdims - tidx, s + tidx) - : Dims(); - const Dims countv = - variable->m_ShapeID == ShapeID::GlobalArray - ? helper::Uint64ArrayToSizetVector(tdims - tidx, c + tidx) - : Dims(); + const Dims startv = variable->m_ShapeID == ShapeID::GlobalArray + ? helper::Uint64ArrayToSizetVector(tdims - tidx, s + tidx) + : Dims(); + const Dims countv = variable->m_ShapeID == ShapeID::GlobalArray + ? helper::Uint64ArrayToSizetVector(tdims - tidx, c + tidx) + : Dims(); if (verbose > 2) { @@ -2175,8 +2125,8 @@ int readVar(core::Engine *fp, core::IO *io, core::Variable *variable) { if (verbose > 2) { - printf("set Step selection: from relative step %" PRIu64 - " read %" PRIu64 " steps\n", + printf("set Step selection: from relative step %" PRIu64 " read %" PRIu64 + " steps\n", s[0], c[0]); } variable->SetStepSelection({s[0], c[0]}); @@ -2186,8 +2136,7 @@ int readVar(core::Engine *fp, core::IO *io, core::Variable *variable) fp->Get(*variable, dataV, adios2::Mode::Sync); // print slice - print_dataset(dataV.data(), variable->m_Type, s, c, tdims, - ndigits_dims); + print_dataset(dataV.data(), variable->m_Type, s, c, tdims, ndigits_dims); // prepare for next read sum += actualreadn; @@ -2225,8 +2174,8 @@ int readVar(core::Engine *fp, core::IO *io, core::Variable *variable) * Return: 0: ok, != 0 on error */ template -int readVarBlock(core::Engine *fp, core::IO *io, core::Variable *variable, - size_t step, size_t blockid, Dims Count, Dims Start) +int readVarBlock(core::Engine *fp, core::IO *io, core::Variable *variable, size_t step, + size_t blockid, Dims Count, Dims Start) { int i, j; uint64_t start_t[MAX_DIMS], @@ -2237,17 +2186,16 @@ int readVarBlock(core::Engine *fp, core::IO *io, core::Variable *variable, int tidx; uint64_t st, ct; std::vector dataV; - uint64_t sum; // working var to sum up things - uint64_t maxreadn; // max number of elements to read once up to a limit - // (10MB of data) - uint64_t actualreadn; // our decision how much to read at once + uint64_t sum; // working var to sum up things + uint64_t maxreadn; // max number of elements to read once up to a limit + // (10MB of data) + uint64_t actualreadn; // our decision how much to read at once uint64_t readn[MAX_DIMS]; // how big chunk to read in in each dimension? bool incdim; // used in incremental reading in int ndigits_dims[32]; // # of digits (to print) of each dimension const size_t elemsize = variable->m_ElementSize; - const int nsteps = - (timestep ? 1 : static_cast(variable->GetAvailableStepsCount())); + const int nsteps = (timestep ? 1 : static_cast(variable->GetAvailableStepsCount())); const int ndim = static_cast(variable->m_Count.size()); // create the counter arrays with the appropriate lengths // transfer start and count arrays to format dependent arrays @@ -2302,14 +2250,13 @@ int readVarBlock(core::Engine *fp, core::IO *io, core::Variable *variable, count_t[j] = ct; nelems *= ct; if (verbose > 1) - printf(" s[%d]=%" PRIu64 ", c[%d]=%" PRIu64 ", n=%" PRIu64 "\n", - j, start_t[j], j, count_t[j], nelems); + printf(" s[%d]=%" PRIu64 ", c[%d]=%" PRIu64 ", n=%" PRIu64 "\n", j, start_t[j], j, + count_t[j], nelems); } if (verbose > 1) { - printf(" total size of data to read = %" PRIu64 "\n", - nelems * elemsize); + printf(" total size of data to read = %" PRIu64 "\n", nelems * elemsize); } print_slice_info(variable, false, start_t, count_t, Count); @@ -2353,8 +2300,7 @@ int readVarBlock(core::Engine *fp, core::IO *io, core::Variable *variable, actualreadn = actualreadn * readn[i]; } if (verbose > 1) - printf(" read %" PRIu64 " elements at once, %" PRIu64 - " in total (nelems=%" PRIu64 ")\n", + printf(" read %" PRIu64 " elements at once, %" PRIu64 " in total (nelems=%" PRIu64 ")\n", actualreadn, sum, nelems); // init s and c @@ -2364,8 +2310,8 @@ int readVarBlock(core::Engine *fp, core::IO *io, core::Variable *variable, s[j] = start_t[j]; c[j] = readn[j]; - ndigits_dims[j] = ndigits(start_t[j] + count_t[j] - - 1); // -1: dim=100 results in 2 digits (0..99) + ndigits_dims[j] = + ndigits(start_t[j] + count_t[j] - 1); // -1: dim=100 results in 2 digits (0..99) } // read until read all 'nelems' elements @@ -2394,9 +2340,8 @@ int readVarBlock(core::Engine *fp, core::IO *io, core::Variable *variable, printf(" read %" PRIu64 " elems\n", actualreadn); } if (verbose > 1) - printf(" read block %zu from offset %" PRIu64 " nelems %" PRIu64 - ")\n", - blockid, startoffset, actualreadn); + printf(" read block %zu from offset %" PRIu64 " nelems %" PRIu64 ")\n", blockid, + startoffset, actualreadn); // read a slice finally Dims startv = helper::Uint64ArrayToSizetVector(ndim, s); @@ -2437,9 +2382,7 @@ int readVarBlock(core::Engine *fp, core::IO *io, core::Variable *variable, { if (verbose > 2) { - printf("set Step selection: from %" PRIu64 " read %" PRIu64 - " steps\n", - s[0], c[0]); + printf("set Step selection: from %" PRIu64 " read %" PRIu64 " steps\n", s[0], c[0]); } variable->SetStepSelection({step, 1}); } @@ -2501,11 +2444,9 @@ bool matchesAMask(const char *name) if (name[0] == '/') // have to check if it matches from the // second character too startpos = 1; - if (excode == 0 && // matches - (pmatch[0].rm_so == 0 || - pmatch[0].rm_so == startpos) && // from the beginning - static_cast(pmatch[0].rm_eo) == - strlen(name) // to the very end of the name + if (excode == 0 && // matches + (pmatch[0].rm_so == 0 || pmatch[0].rm_so == startpos) && // from the beginning + static_cast(pmatch[0].rm_eo) == strlen(name) // to the very end of the name ) #else bool matches = std::regex_match(name, varregex[i]); @@ -2515,8 +2456,7 @@ bool matchesAMask(const char *name) #endif { if (verbose > 1) - printf("Name %s matches regexp %i %s\n", name, i, - varmask[i]); + printf("Name %s matches regexp %i %s\n", name, i, varmask[i]); return true; } } @@ -2532,8 +2472,7 @@ bool matchesAMask(const char *name) #endif { if (verbose > 1) - printf("Name %s matches varmask %i %s\n", name, i, - varmask[i]); + printf("Name %s matches varmask %i %s\n", name, i, varmask[i]); return true; } } @@ -2551,8 +2490,8 @@ int print_start(const std::string &fname) { if ((outf = fopen(fname.c_str(), "w")) == NULL) { - fprintf(stderr, "Error at opening for writing file %s: %s\n", - fname.c_str(), strerror(errno)); + fprintf(stderr, "Error at opening for writing file %s: %s\n", fname.c_str(), + strerror(errno)); return 30; } } @@ -2561,11 +2500,10 @@ int print_start(const std::string &fname) void print_stop() { fclose(outf); } -static int nextcol = - 0; // column index to start with (can have lines split in two calls) +static int nextcol = 0; // column index to start with (can have lines split in two calls) -void print_slice_info(core::VariableBase *variable, bool timed, uint64_t *s, - uint64_t *c, Dims count) +void print_slice_info(core::VariableBase *variable, bool timed, uint64_t *s, uint64_t *c, + Dims count) { // print the slice info in indexing is on and // not the complete variable is read @@ -2586,8 +2524,7 @@ void print_slice_info(core::VariableBase *variable, bool timed, uint64_t *s, } if (isaslice) { - fprintf(outf, "%c slice (%" PRIu64 ":%" PRIu64, commentchar, s[0], - s[0] + c[0] - 1); + fprintf(outf, "%c slice (%" PRIu64 ":%" PRIu64, commentchar, s[0], s[0] + c[0] - 1); for (size_t i = 1; i < tdim; i++) { fprintf(outf, ", %" PRIu64 ":%" PRIu64, s[i], s[i] + c[i] - 1); @@ -2630,16 +2567,14 @@ int print_data_as_string(const void *data, int maxlen, DataType adiosvartype) fprintf(stderr, "Error in bpls code: cannot use print_data_as_string() " "for type \"%d\"\n", - static_cast::type>( - adiosvartype)); + static_cast::type>(adiosvartype)); return -1; } return 0; } -int print_data_characteristics(void *min, void *max, double *avg, - double *std_dev, DataType adiosvartype, - bool allowformat) +int print_data_characteristics(void *min, void *max, double *avg, double *std_dev, + DataType adiosvartype, bool allowformat) { bool f = format.size() && allowformat; const char *fmt = format.c_str(); @@ -2876,8 +2811,7 @@ bool print_data_xml(const char *s, const size_t length) return false; } -int print_data(const void *data, int item, DataType adiosvartype, - bool allowformat) +int print_data(const void *data, int item, DataType adiosvartype, bool allowformat) { bool f = format.size() && allowformat; const char *fmt = format.c_str(); @@ -2901,8 +2835,7 @@ int print_data(const void *data, int item, DataType adiosvartype, case DataType::String: { // fprintf(outf, (f ? fmt : "\"%s\""), ((char *)data) + item); - const std::string *dataStr = - reinterpret_cast(data); + const std::string *dataStr = reinterpret_cast(data); fprintf(outf, (f ? fmt : "\"%s\""), dataStr[item].c_str()); break; } @@ -2957,8 +2890,8 @@ int print_data(const void *data, int item, DataType adiosvartype, return 0; } -int print_dataset(const void *data, const DataType vartype, uint64_t *s, - uint64_t *c, int tdims, int *ndigits) +int print_dataset(const void *data, const DataType vartype, uint64_t *s, uint64_t *c, int tdims, + int *ndigits) { int i, item, steps; char idxstr[128], buf[16]; @@ -2985,12 +2918,10 @@ int print_dataset(const void *data, const DataType vartype, uint64_t *s, { if (!noindex && tdims > 0) { - snprintf(idxstr, sizeof(idxstr), " (%*" PRIu64, ndigits[0], - ids[0]); + snprintf(idxstr, sizeof(idxstr), " (%*" PRIu64, ndigits[0], ids[0]); for (i = 1; i < tdims; i++) { - snprintf(buf, sizeof(buf), ",%*" PRIu64, ndigits[i], - ids[i]); + snprintf(buf, sizeof(buf), ",%*" PRIu64, ndigits[i], ids[i]); strcat(idxstr, buf); } strcat(idxstr, ") "); @@ -2999,8 +2930,7 @@ int print_dataset(const void *data, const DataType vartype, uint64_t *s, // print item fprintf(outf, "%s", idxstr); - if (printByteAsChar && - (adiosvartype == DataType::Int8 || adiosvartype == DataType::UInt8)) + if (printByteAsChar && (adiosvartype == DataType::Int8 || adiosvartype == DataType::UInt8)) { /* special case: k-D byte array printed as (k-1)D array of * strings @@ -3011,12 +2941,10 @@ int print_dataset(const void *data, const DataType vartype, uint64_t *s, } else { - print_data_as_string( - (char *)data + item, c[tdims - 1], - adiosvartype); // print data of last dim as string - item += c[tdims - 1] - 1; // will be ++-ed once below - ids[tdims - 1] = - s[tdims - 1] + c[tdims - 1] - 1; // will be rolled below + print_data_as_string((char *)data + item, c[tdims - 1], + adiosvartype); // print data of last dim as string + item += c[tdims - 1] - 1; // will be ++-ed once below + ids[tdims - 1] = s[tdims - 1] + c[tdims - 1] - 1; // will be rolled below } nextcol = ncols - 1; // force new line, will be ++-ed once below } @@ -3092,8 +3020,7 @@ size_t relative_to_absolute_step(core::Engine *fp, core::Variable *variable, } template -Dims get_global_array_signature(core::Engine *fp, core::IO *io, - core::Variable *variable) +Dims get_global_array_signature(core::Engine *fp, core::IO *io, core::Variable *variable) { const size_t ndim = variable->m_Shape.size(); Dims dims(ndim, 0); @@ -3123,9 +3050,8 @@ Dims get_global_array_signature(core::Engine *fp, core::IO *io, for (size_t k = 0; k < ndim; k++) { size_t n = - (minBlocks->WasLocalValue - ? reinterpret_cast(minBlocks->Shape) - : minBlocks->Shape[k]); + (minBlocks->WasLocalValue ? reinterpret_cast(minBlocks->Shape) + : minBlocks->Shape[k]); if (firstStep) { dims[k] = n; @@ -3175,8 +3101,7 @@ Dims get_global_array_signature(core::Engine *fp, core::IO *io, } template -std::pair get_local_array_signature(core::Engine *fp, - core::IO *io, +std::pair get_local_array_signature(core::Engine *fp, core::IO *io, core::Variable *variable) { const size_t ndim = variable->m_Count.size(); @@ -3246,8 +3171,7 @@ std::pair get_local_array_signature(core::Engine *fp, { dims.resize(minBlocksInfo->Dims); size_t RelStep = 0; - for (RelStep = 0; RelStep < variable->m_AvailableStepsCount; - RelStep++) + for (RelStep = 0; RelStep < variable->m_AvailableStepsCount; RelStep++) { if (RelStep > 0) { @@ -3289,13 +3213,12 @@ std::pair get_local_array_signature(core::Engine *fp, } else { - std::map::BPInfo>> - allblocks = fp->AllStepsBlocksInfo(*variable); + std::map::BPInfo>> allblocks = + fp->AllStepsBlocksInfo(*variable); for (auto &blockpair : allblocks) { - std::vector::BPInfo> - &blocks = blockpair.second; + std::vector::BPInfo> &blocks = blockpair.second; const size_t blocksSize = blocks.size(); if (firstStep) { @@ -3329,8 +3252,7 @@ std::pair get_local_array_signature(core::Engine *fp, } static int ndigits_dims[32] = { - 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, - 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, + 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, 8, }; template void print_decomp(core::Engine *fp, core::IO *io, core::Variable *variable) @@ -3339,8 +3261,8 @@ void print_decomp(core::Engine *fp, core::IO *io, core::Variable *variable) DataType adiosvartype = variable->m_Type; MinVarInfo *minBlocksInfo = nullptr; - minBlocksInfo = fp->MinBlocksInfo( - *variable, variable->m_AvailableStepsCount - 1 /* relative step 0 */); + minBlocksInfo = + fp->MinBlocksInfo(*variable, variable->m_AvailableStepsCount - 1 /* relative step 0 */); // first step if (minBlocksInfo) @@ -3351,13 +3273,12 @@ void print_decomp(core::Engine *fp, core::IO *io, core::Variable *variable) if (variable->m_ShapeID == ShapeID::GlobalValue || variable->m_ShapeID == ShapeID::LocalValue) { - for (size_t RelStep = 0; RelStep < variable->m_AvailableStepsCount; - RelStep++) + for (size_t RelStep = 0; RelStep < variable->m_AvailableStepsCount; RelStep++) { minBlocksInfo = fp->MinBlocksInfo(*variable, RelStep); auto blocks = minBlocksInfo->BlocksInfo; - fprintf(outf, "%c step %*zu: ", commentchar, - ndigits_nsteps, minBlocksInfo->Step); + fprintf(outf, "%c step %*zu: ", commentchar, ndigits_nsteps, + minBlocksInfo->Step); if (blocks.size() == 1) { fprintf(outf, " = "); @@ -3396,8 +3317,7 @@ void print_decomp(core::Engine *fp, core::IO *io, core::Variable *variable) else { // arrays - for (size_t RelStep = 0; RelStep < variable->m_AvailableStepsCount; - RelStep++) + for (size_t RelStep = 0; RelStep < variable->m_AvailableStepsCount; RelStep++) { minBlocksInfo = fp->MinBlocksInfo(*variable, RelStep); auto blocks = minBlocksInfo->BlocksInfo; @@ -3418,37 +3338,33 @@ void print_decomp(core::Engine *fp, core::IO *io, core::Variable *variable) size_t stepAbsolute = minBlocksInfo->Step; - fprintf(outf, "%c step %*zu: ", commentchar, - ndigits_nsteps, stepAbsolute); + fprintf(outf, "%c step %*zu: ", commentchar, ndigits_nsteps, stepAbsolute); fprintf(outf, "\n"); const size_t blocksSize = blocks.size(); ndigits_nblocks = ndigits(blocksSize - 1); for (size_t j = 0; j < blocksSize; j++) { - fprintf(outf, "%c block %*zu: [", commentchar, - ndigits_nblocks, j); + fprintf(outf, "%c block %*zu: [", commentchar, ndigits_nblocks, j); // just in case ndim for a block changes in LocalArrays: ndim = variable->m_Count.size(); for (size_t k = 0; k < ndim; k++) { - size_t c = - (minBlocksInfo->WasLocalValue - ? reinterpret_cast(blocks[j].Count) - : blocks[j].Count[k]); + size_t c = (minBlocksInfo->WasLocalValue + ? reinterpret_cast(blocks[j].Count) + : blocks[j].Count[k]); if (c) { if (variable->m_ShapeID == ShapeID::GlobalArray) { size_t s = (minBlocksInfo->WasLocalValue - ? reinterpret_cast( - blocks[j].Start) + ? reinterpret_cast(blocks[j].Start) : blocks[j].Start[k]); - fprintf(outf, "%*zu:%*zu", ndigits_dims[k], s, - ndigits_dims[k], s + c - 1); + fprintf(outf, "%*zu:%*zu", ndigits_dims[k], s, ndigits_dims[k], + s + c - 1); } else { @@ -3458,8 +3374,7 @@ void print_decomp(core::Engine *fp, core::IO *io, core::Variable *variable) } else { - fprintf(outf, "%-*s", 2 * ndigits_dims[k] + 1, - "null"); + fprintf(outf, "%-*s", 2 * ndigits_dims[k] + 1, "null"); } if (k < ndim - 1) fprintf(outf, ", "); @@ -3472,12 +3387,10 @@ void print_decomp(core::Engine *fp, core::IO *io, core::Variable *variable) if (true /* TODO: variable->has_minmax */) { fprintf(outf, " = "); - print_data(&blocks[j].MinMax.MinUnion, 0, - adiosvartype, false); + print_data(&blocks[j].MinMax.MinUnion, 0, adiosvartype, false); fprintf(outf, " / "); - print_data(&blocks[j].MinMax.MaxUnion, 0, - adiosvartype, false); + print_data(&blocks[j].MinMax.MaxUnion, 0, adiosvartype, false); } else { @@ -3497,10 +3410,8 @@ void print_decomp(core::Engine *fp, core::IO *io, core::Variable *variable) } else { - c = Dims(blocks[j].Count, - blocks[j].Count + ndim); - s = Dims(blocks[j].Start, - blocks[j].Start + ndim); + c = Dims(blocks[j].Count, blocks[j].Count + ndim); + s = Dims(blocks[j].Start, blocks[j].Start + ndim); } } else @@ -3516,25 +3427,22 @@ void print_decomp(core::Engine *fp, core::IO *io, core::Variable *variable) return; } - std::map::BPInfo>> - allblocks = fp->AllStepsBlocksInfo(*variable); + std::map::BPInfo>> allblocks = + fp->AllStepsBlocksInfo(*variable); if (allblocks.empty()) { return; } size_t laststep = allblocks.rbegin()->first; int ndigits_nsteps = ndigits(laststep); - if (variable->m_ShapeID == ShapeID::GlobalValue || - variable->m_ShapeID == ShapeID::LocalValue) + if (variable->m_ShapeID == ShapeID::GlobalValue || variable->m_ShapeID == ShapeID::LocalValue) { // scalars for (auto &blockpair : allblocks) { size_t step = blockpair.first; - std::vector::BPInfo> &blocks = - blockpair.second; - fprintf(outf, "%c step %*zu: ", commentchar, ndigits_nsteps, - step); + std::vector::BPInfo> &blocks = blockpair.second; + fprintf(outf, "%c step %*zu: ", commentchar, ndigits_nsteps, step); if (blocks.size() == 1) { fprintf(outf, " = "); @@ -3593,18 +3501,15 @@ void print_decomp(core::Engine *fp, core::IO *io, core::Variable *variable) for (auto &blockpair : allblocks) { size_t stepAbsolute = blockpair.first; - std::vector::BPInfo> &blocks = - blockpair.second; + std::vector::BPInfo> &blocks = blockpair.second; const size_t blocksSize = blocks.size(); - fprintf(outf, "%c step %*zu: ", commentchar, ndigits_nsteps, - stepAbsolute); + fprintf(outf, "%c step %*zu: ", commentchar, ndigits_nsteps, stepAbsolute); fprintf(outf, "\n"); ndigits_nblocks = ndigits(blocksSize - 1); for (size_t j = 0; j < blocksSize; j++) { - fprintf(outf, "%c block %*zu: [", commentchar, - ndigits_nblocks, j); + fprintf(outf, "%c block %*zu: [", commentchar, ndigits_nblocks, j); // just in case ndim for a block changes in LocalArrays: ndim = variable->m_Count.size(); @@ -3615,16 +3520,13 @@ void print_decomp(core::Engine *fp, core::IO *io, core::Variable *variable) { if (variable->m_ShapeID == ShapeID::GlobalArray) { - fprintf(outf, "%*zu:%*zu", ndigits_dims[k], - blocks[j].Start[k], ndigits_dims[k], - blocks[j].Start[k] + blocks[j].Count[k] - - 1); + fprintf(outf, "%*zu:%*zu", ndigits_dims[k], blocks[j].Start[k], + ndigits_dims[k], blocks[j].Start[k] + blocks[j].Count[k] - 1); } else { // blockStart is empty vector for LocalArrays - fprintf(outf, "0:%*zu", ndigits_dims[k], - blocks[j].Count[k] - 1); + fprintf(outf, "0:%*zu", ndigits_dims[k], blocks[j].Count[k] - 1); } } else @@ -3655,8 +3557,8 @@ void print_decomp(core::Engine *fp, core::IO *io, core::Variable *variable) fprintf(outf, "\n"); if (dump) { - readVarBlock(fp, io, variable, stepRelative, j, - blocks[j].Count, blocks[j].Start); + readVarBlock(fp, io, variable, stepRelative, j, blocks[j].Count, + blocks[j].Start); } } ++stepRelative; @@ -3665,8 +3567,7 @@ void print_decomp(core::Engine *fp, core::IO *io, core::Variable *variable) } template -void print_decomp_singlestep(core::Engine *fp, core::IO *io, - core::Variable *variable) +void print_decomp_singlestep(core::Engine *fp, core::IO *io, core::Variable *variable) { /* Print block info */ DataType adiosvartype = variable->m_Type; @@ -3691,8 +3592,7 @@ void print_decomp_singlestep(core::Engine *fp, core::IO *io, } const int ndigits_nblocks = ndigits(blocksSize - 1); - if (variable->m_ShapeID == ShapeID::GlobalValue || - variable->m_ShapeID == ShapeID::LocalValue) + if (variable->m_ShapeID == ShapeID::GlobalValue || variable->m_ShapeID == ShapeID::LocalValue) { // scalars if (dump) @@ -3712,8 +3612,7 @@ void print_decomp_singlestep(core::Engine *fp, core::IO *io, if (!minBlocks) print_data(&coreBlocks[j].Value, 0, adiosvartype, true); else - print_data(&minBlocks->BlocksInfo[j].BufferP, 0, - adiosvartype, true); + print_data(&minBlocks->BlocksInfo[j].BufferP, 0, adiosvartype, true); ++col; if (j < blocksSize - 1) { @@ -3757,8 +3656,7 @@ void print_decomp_singlestep(core::Engine *fp, core::IO *io, for (size_t j = 0; j < blocksSize; j++) { - fprintf(outf, "%c block %*zu: [", commentchar, - ndigits_nblocks, j); + fprintf(outf, "%c block %*zu: [", commentchar, ndigits_nblocks, j); // just in case ndim for a block changes in LocalArrays: ndim = variable->m_Count.size(); @@ -3771,16 +3669,14 @@ void print_decomp_singlestep(core::Engine *fp, core::IO *io, { if (variable->m_ShapeID == ShapeID::GlobalArray) { - fprintf(outf, "%*zu:%*zu", ndigits_dims[k], - coreBlocks[j].Start[k], ndigits_dims[k], - coreBlocks[j].Start[k] + - coreBlocks[j].Count[k] - 1); + fprintf(outf, "%*zu:%*zu", ndigits_dims[k], coreBlocks[j].Start[k], + ndigits_dims[k], + coreBlocks[j].Start[k] + coreBlocks[j].Count[k] - 1); } else { // blockStart is empty vector for LocalArrays - fprintf(outf, "0:%*zu", ndigits_dims[k], - coreBlocks[j].Count[k] - 1); + fprintf(outf, "0:%*zu", ndigits_dims[k], coreBlocks[j].Count[k] - 1); } } else @@ -3795,8 +3691,7 @@ void print_decomp_singlestep(core::Engine *fp, core::IO *io, if (variable->m_ShapeID == ShapeID::GlobalArray) { fprintf(outf, "%*zu:%*zu", ndigits_dims[k], - minBlocks->BlocksInfo[j].Start[k], - ndigits_dims[k], + minBlocks->BlocksInfo[j].Start[k], ndigits_dims[k], minBlocks->BlocksInfo[j].Start[k] + minBlocks->BlocksInfo[j].Count[k] - 1); } @@ -3833,12 +3728,12 @@ void print_decomp_singlestep(core::Engine *fp, core::IO *io, else { fprintf(outf, " = "); - print_data(&minBlocks->BlocksInfo[j].MinMax.MinUnion, 0, - adiosvartype, false); + print_data(&minBlocks->BlocksInfo[j].MinMax.MinUnion, 0, adiosvartype, + false); fprintf(outf, " / "); - print_data(&minBlocks->BlocksInfo[j].MinMax.MaxUnion, 0, - adiosvartype, false); + print_data(&minBlocks->BlocksInfo[j].MinMax.MaxUnion, 0, adiosvartype, + false); } } else @@ -3851,8 +3746,8 @@ void print_decomp_singlestep(core::Engine *fp, core::IO *io, { if (!minBlocks) { - readVarBlock(fp, io, variable, stepRelative, j, - coreBlocks[j].Count, coreBlocks[j].Start); + readVarBlock(fp, io, variable, stepRelative, j, coreBlocks[j].Count, + coreBlocks[j].Start); } else { @@ -3946,8 +3841,7 @@ int compile_regexp_masks(void) fprintf(stderr, "Error: \"%s\" is an invalid extended regular " "expression. C++ regex error code: %d\n", - varmask[i], - e.code() == std::regex_constants::error_badrepeat); + varmask[i], e.code() == std::regex_constants::error_badrepeat); return 2; } } diff --git a/source/utils/bpls/bpls.h b/source/utils/bpls/bpls.h index 42a8d7363d..ffce2621b4 100644 --- a/source/utils/bpls/bpls.h +++ b/source/utils/bpls/bpls.h @@ -22,11 +22,11 @@ namespace utils { /* definitions for bpls.c */ -#define myfree(p) \ - if (p) \ - { \ - free(p); \ - p = NULL; \ +#define myfree(p) \ + if (p) \ + { \ + free(p); \ + p = NULL; \ } #define CUT_TO_BYTE(x) (x < 0 ? 0 : (x > 255 ? 255 : x)) @@ -44,14 +44,8 @@ struct Entry core::VariableBase *var; core::AttributeBase *attr; }; - Entry(DataType type, core::VariableBase *v) - : typeName(type), isVar(true), var(v) - { - } - Entry(DataType type, core::AttributeBase *a) - : typeName(type), isVar(false), attr(a) - { - } + Entry(DataType type, core::VariableBase *v) : typeName(type), isVar(true), var(v) {} + Entry(DataType type, core::AttributeBase *a) : typeName(type), isVar(false), attr(a) {} }; // how to print one data item of an array @@ -64,59 +58,51 @@ void parseDimSpec(const std::string &str, int64_t *dims); int compile_regexp_masks(void); void printSettings(void); int doList(const char *path); -void mergeLists(int nV, char **listV, int nA, char **listA, char **mlist, - bool *isVar); +void mergeLists(int nV, char **listV, int nA, char **listA, char **mlist, bool *isVar); template -int printVariableInfo(core::Engine *fp, core::IO *io, - core::Variable *variable); +int printVariableInfo(core::Engine *fp, core::IO *io, core::Variable *variable); template int readVar(core::Engine *fp, core::IO *io, core::Variable *variable); template -int readVarBlock(core::Engine *fp, core::IO *io, core::Variable *variable, - int blockid); +int readVarBlock(core::Engine *fp, core::IO *io, core::Variable *variable, int blockid); template size_t relative_to_absolute_step(core::Engine *fp, core::Variable *variable, const size_t relstep); template -Dims get_global_array_signature(core::Engine *fp, core::IO *io, - core::Variable *variable); +Dims get_global_array_signature(core::Engine *fp, core::IO *io, core::Variable *variable); template -std::pair get_local_array_signature(core::Engine *fp, - core::IO *io, +std::pair get_local_array_signature(core::Engine *fp, core::IO *io, core::Variable *variable); int cmpstringp(const void *p1, const void *p2); bool grpMatchesMask(char *name); bool matchesAMask(const char *name); int print_start(const std::string &fnamestr); -void print_slice_info(core::VariableBase *variable, bool timed, uint64_t *s, - uint64_t *c, Dims count); -int print_data(const void *data, int item, DataType adiosvartypes, - bool allowformat); +void print_slice_info(core::VariableBase *variable, bool timed, uint64_t *s, uint64_t *c, + Dims count); +int print_data(const void *data, int item, DataType adiosvartypes, bool allowformat); /* s is a character array not necessarily null terminated. * return false on OK print, true if it not XML (not printed)*/ bool print_data_xml(const char *s, const size_t length); -int print_dataset(const void *data, const DataType vartype, uint64_t *s, - uint64_t *c, int tdims, int *ndigits); +int print_dataset(const void *data, const DataType vartype, uint64_t *s, uint64_t *c, int tdims, + int *ndigits); void print_endline(void); void print_stop(void); int print_data_hist(core::VariableBase *vi, char *varname); -int print_data_characteristics(void *min, void *max, double *avg, - double *std_dev, DataType adiosvartypes, - bool allowformat); +int print_data_characteristics(void *min, void *max, double *avg, double *std_dev, + DataType adiosvartypes, bool allowformat); template void print_decomp(core::Engine *fp, core::IO *io, core::Variable *variable); template -void print_decomp_singlestep(core::Engine *fp, core::IO *io, - core::Variable *variable); +void print_decomp_singlestep(core::Engine *fp, core::IO *io, core::Variable *variable); // close namespace } } diff --git a/testing/adios2/backward_compatibility/TestBP4ReadOldCompressed.cpp b/testing/adios2/backward_compatibility/TestBP4ReadOldCompressed.cpp index 90bc6dfcf4..7a57f7f86b 100644 --- a/testing/adios2/backward_compatibility/TestBP4ReadOldCompressed.cpp +++ b/testing/adios2/backward_compatibility/TestBP4ReadOldCompressed.cpp @@ -22,9 +22,8 @@ class BP4ReadOldCompressed : public ::testing::Test BP4ReadOldCompressed() = default; }; -class BP4ReadOldCompressedP -: public BP4ReadOldCompressed, - public ::testing::WithParamInterface> +class BP4ReadOldCompressedP : public BP4ReadOldCompressed, + public ::testing::WithParamInterface> { protected: std::string GetFileName() { return std::get<0>(GetParam()); }; @@ -84,8 +83,7 @@ TEST_P(BP4ReadOldCompressedP, Read) } else { - ASSERT_THROW(bpReader.Get(var_a, R64, adios2::Mode::Sync), - std::runtime_error); + ASSERT_THROW(bpReader.Get(var_a, R64, adios2::Mode::Sync), std::runtime_error); } bpReader.Close(); } diff --git a/testing/adios2/bindings/C/SmallTestData_c.h b/testing/adios2/bindings/C/SmallTestData_c.h index 7957106d61..6125b55817 100644 --- a/testing/adios2/bindings/C/SmallTestData_c.h +++ b/testing/adios2/bindings/C/SmallTestData_c.h @@ -16,21 +16,17 @@ int8_t data_I8[10] = {0, 1, -2, 3, -4, 5, -6, 7, -8, 9}; int16_t data_I16[10] = {512, 513, -510, 515, -508, 517, -506, 519, -504, 521}; int32_t data_I32[10] = {131072, 131073, -131070, 131075, -131068, 131077, -131066, 131079, -131064, 131081}; -int64_t data_I64[10] = {8589934592, 8589934593, -8589934590, 8589934595, - -8589934588, 8589934597, -8589934586, 8589934599, - -8589934584, 8589934601}; +int64_t data_I64[10] = {8589934592, 8589934593, -8589934590, 8589934595, -8589934588, + 8589934597, -8589934586, 8589934599, -8589934584, 8589934601}; uint8_t data_U8[10] = {128, 129, 130, 131, 132, 133, 134, 135, 136, 137}; -uint16_t data_U16[10] = {32768, 32769, 32770, 32771, 32772, - 32773, 32774, 32775, 32776, 32777}; -uint32_t data_U32[10] = {2147483648, 2147483649, 2147483650, 2147483651, - 2147483652, 2147483653, 2147483654, 2147483655, - 2147483656, 2147483657}; -uint64_t data_U64[10] = {9223372036854775808UL, 9223372036854775809UL, - 9223372036854775810UL, 9223372036854775811UL, - 9223372036854775812UL, 9223372036854775813UL, - 9223372036854775814UL, 9223372036854775815UL, - 9223372036854775816UL, 9223372036854775817UL}; +uint16_t data_U16[10] = {32768, 32769, 32770, 32771, 32772, 32773, 32774, 32775, 32776, 32777}; +uint32_t data_U32[10] = {2147483648, 2147483649, 2147483650, 2147483651, 2147483652, + 2147483653, 2147483654, 2147483655, 2147483656, 2147483657}; +uint64_t data_U64[10] = {9223372036854775808UL, 9223372036854775809UL, 9223372036854775810UL, + 9223372036854775811UL, 9223372036854775812UL, 9223372036854775813UL, + 9223372036854775814UL, 9223372036854775815UL, 9223372036854775816UL, + 9223372036854775817UL}; float data_R32[10] = {0, 1, 2, 3, 4, 5, 6, 7, 8, 9}; double data_R64[10] = {0, 1, 2, 3, 4, 5, 6, 7, 8, 9}; diff --git a/testing/adios2/bindings/C/TestBPAvailableVariablesAttribites.cpp b/testing/adios2/bindings/C/TestBPAvailableVariablesAttribites.cpp index 8edc17fdf3..c4ad9f62bd 100644 --- a/testing/adios2/bindings/C/TestBPAvailableVariablesAttribites.cpp +++ b/testing/adios2/bindings/C/TestBPAvailableVariablesAttribites.cpp @@ -73,41 +73,33 @@ TEST_F(BPAvailableVariablesAttributes, AvailableVariablesAttributes) // Define variables in ioH - adios2_variable *varI8 = - adios2_define_variable(ioH, "varI8", adios2_type_int8_t, 1, shape, - start, count, adios2_constant_dims_false); - adios2_variable *varI16 = - adios2_define_variable(ioH, "varI16", adios2_type_int16_t, 1, shape, - start, count, adios2_constant_dims_false); - adios2_variable *varI32 = - adios2_define_variable(ioH, "varI32", adios2_type_int32_t, 1, shape, - start, count, adios2_constant_dims_false); - adios2_variable *varI64 = - adios2_define_variable(ioH, "varI64", adios2_type_int64_t, 1, shape, - start, count, adios2_constant_dims_false); - - adios2_variable *varU8 = - adios2_define_variable(ioH, "varU8", adios2_type_uint8_t, 1, shape, - start, count, adios2_constant_dims_false); - adios2_variable *varU16 = adios2_define_variable( - ioH, "varU16", adios2_type_uint16_t, 1, shape, start, count, - adios2_constant_dims_false); - adios2_variable *varU32 = adios2_define_variable( - ioH, "varU32", adios2_type_uint32_t, 1, shape, start, count, - adios2_constant_dims_false); - adios2_variable *varU64 = adios2_define_variable( - ioH, "varU64", adios2_type_uint64_t, 1, shape, start, count, - adios2_constant_dims_false); - - adios2_variable *varR32 = - adios2_define_variable(ioH, "varR32", adios2_type_float, 1, shape, - start, count, adios2_constant_dims_false); - adios2_variable *varR64 = - adios2_define_variable(ioH, "varR64", adios2_type_double, 1, shape, - start, count, adios2_constant_dims_false); - - adios2_engine *engineH = - adios2_open(ioH, "available.bp", adios2_mode_write); + adios2_variable *varI8 = adios2_define_variable(ioH, "varI8", adios2_type_int8_t, 1, shape, + start, count, adios2_constant_dims_false); + adios2_variable *varI16 = adios2_define_variable( + ioH, "varI16", adios2_type_int16_t, 1, shape, start, count, adios2_constant_dims_false); + adios2_variable *varI32 = adios2_define_variable( + ioH, "varI32", adios2_type_int32_t, 1, shape, start, count, adios2_constant_dims_false); + adios2_variable *varI64 = adios2_define_variable( + ioH, "varI64", adios2_type_int64_t, 1, shape, start, count, adios2_constant_dims_false); + + adios2_variable *varU8 = adios2_define_variable(ioH, "varU8", adios2_type_uint8_t, 1, shape, + start, count, adios2_constant_dims_false); + adios2_variable *varU16 = + adios2_define_variable(ioH, "varU16", adios2_type_uint16_t, 1, shape, start, count, + adios2_constant_dims_false); + adios2_variable *varU32 = + adios2_define_variable(ioH, "varU32", adios2_type_uint32_t, 1, shape, start, count, + adios2_constant_dims_false); + adios2_variable *varU64 = + adios2_define_variable(ioH, "varU64", adios2_type_uint64_t, 1, shape, start, count, + adios2_constant_dims_false); + + adios2_variable *varR32 = adios2_define_variable(ioH, "varR32", adios2_type_float, 1, shape, + start, count, adios2_constant_dims_false); + adios2_variable *varR64 = adios2_define_variable( + ioH, "varR64", adios2_type_double, 1, shape, start, count, adios2_constant_dims_false); + + adios2_engine *engineH = adios2_open(ioH, "available.bp", adios2_mode_write); for (size_t i = 0; i < steps; ++i) { @@ -115,73 +107,53 @@ TEST_F(BPAvailableVariablesAttributes, AvailableVariablesAttributes) adios2_set_selection(varI8, 1, startNull.data(), countNull.data()); adios2_put(engineH, varI8, nullptr, adios2_mode_sync); - adios2_set_selection(varI8, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varI8, &data_I8[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varI8, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varI8, &data_I8[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varI16, 1, startNull.data(), countNull.data()); adios2_put(engineH, varI16, nullptr, adios2_mode_sync); - adios2_set_selection(varI16, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varI16, &data_I16[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varI16, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varI16, &data_I16[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varI32, 1, startNull.data(), countNull.data()); adios2_put(engineH, varI32, nullptr, adios2_mode_sync); - adios2_set_selection(varI32, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varI32, &data_I32[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varI32, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varI32, &data_I32[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varI64, 1, startNull.data(), countNull.data()); adios2_put(engineH, varI64, nullptr, adios2_mode_sync); - adios2_set_selection(varI64, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varI64, &data_I64[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varI64, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varI64, &data_I64[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varU8, 1, startNull.data(), countNull.data()); adios2_put(engineH, varU8, nullPointer, adios2_mode_deferred); - adios2_set_selection(varU8, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varU8, &data_U8[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varU8, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varU8, &data_U8[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varU16, 1, startNull.data(), countNull.data()); adios2_put(engineH, varU16, nullPointer, adios2_mode_deferred); - adios2_set_selection(varU16, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varU16, &data_U16[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varU16, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varU16, &data_U16[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varU32, 1, startNull.data(), countNull.data()); adios2_put(engineH, varU32, nullPointer, adios2_mode_deferred); - adios2_set_selection(varU32, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varU32, &data_U32[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varU32, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varU32, &data_U32[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varU64, 1, startNull.data(), countNull.data()); adios2_put(engineH, varU64, nullPointer, adios2_mode_deferred); - adios2_set_selection(varU64, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varU64, &data_U64[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varU64, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varU64, &data_U64[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varR32, 1, startNull.data(), countNull.data()); adios2_put(engineH, varR32, nullPointer, adios2_mode_deferred); - adios2_set_selection(varR32, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varR32, &data_R32[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varR32, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varR32, &data_R32[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varR64, 1, startNull.data(), countNull.data()); adios2_put(engineH, varR64, nullPointer, adios2_mode_deferred); - adios2_set_selection(varR64, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varR64, &data_R64[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varR64, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varR64, &data_R64[data_Nx / 2], adios2_mode_deferred); adios2_end_step(engineH); } @@ -205,24 +177,22 @@ TEST_F(BPAvailableVariablesAttributes, AvailableVariablesAttributes) std::vector inR64(data_Nx / 2); adios2_io *ioH = adios2_declare_io(adiosH, "Reader"); - adios2_engine *engineH = - adios2_open(ioH, "available.bp", adios2_mode_read); + adios2_engine *engineH = adios2_open(ioH, "available.bp", adios2_mode_read); size_t nsteps; adios2_steps(&nsteps, engineH); EXPECT_EQ(nsteps, steps); - while (adios2_begin_step(engineH, adios2_step_mode_read, -1., - &status) == adios2_error_none) + while (adios2_begin_step(engineH, adios2_step_mode_read, -1., &status) == adios2_error_none) { if (status == adios2_step_status_end_of_stream) { break; } - std::vector correct_vars = { - "varI16", "varI32", "varI64", "varI8", "varR32", - "varR64", "varU16", "varU32", "varU64", "varU8"}; + std::vector correct_vars = {"varI16", "varI32", "varI64", "varI8", + "varR32", "varR64", "varU16", "varU32", + "varU64", "varU8"}; std::vector correct_attrs = {"strvalue", "intvalue"}; std::vector vars; diff --git a/testing/adios2/bindings/C/TestBPWriteAggregateReadLocal.cpp b/testing/adios2/bindings/C/TestBPWriteAggregateReadLocal.cpp index 11fbb99ae2..941d70e5cb 100644 --- a/testing/adios2/bindings/C/TestBPWriteAggregateReadLocal.cpp +++ b/testing/adios2/bindings/C/TestBPWriteAggregateReadLocal.cpp @@ -45,13 +45,11 @@ void LocalAggregate1D(const std::string substreams) size_t count[1]; count[0] = Nx; - adios2_variable *variNumbers = - adios2_define_variable(ioH, "ints", adios2_type_int32_t, 1, NULL, - NULL, count, adios2_constant_dims_true); + adios2_variable *variNumbers = adios2_define_variable( + ioH, "ints", adios2_type_int32_t, 1, NULL, NULL, count, adios2_constant_dims_true); - adios2_variable *varfNumbers = - adios2_define_variable(ioH, "floats", adios2_type_float, 1, NULL, - NULL, count, adios2_constant_dims_true); + adios2_variable *varfNumbers = adios2_define_variable( + ioH, "floats", adios2_type_float, 1, NULL, NULL, count, adios2_constant_dims_true); // TODO adios2_set_parameter(ioH, "CollectiveMetadata", "Off"); adios2_set_parameter(ioH, "Profile", "Off"); @@ -61,32 +59,26 @@ void LocalAggregate1D(const std::string substreams) adios2_set_parameter(ioH, "substreams", substreams.c_str()); } - adios2_engine *bpWriter = - adios2_open(ioH, fname.c_str(), adios2_mode_write); + adios2_engine *bpWriter = adios2_open(ioH, fname.c_str(), adios2_mode_write); adios2_step_status step_status; for (size_t i = 0; i < NSteps; ++i) { - adios2_begin_step(bpWriter, adios2_step_mode_read, -1., - &step_status); + adios2_begin_step(bpWriter, adios2_step_mode_read, -1., &step_status); - std::iota(inumbers.begin() + i * Nx, inumbers.begin() + i * Nx + Nx, - mpiRank); + std::iota(inumbers.begin() + i * Nx, inumbers.begin() + i * Nx + Nx, mpiRank); const float randomStart = static_cast(rand() % mpiSize); - std::iota(fnumbers.begin() + i * Nx, fnumbers.begin() + i * Nx + Nx, - randomStart); + std::iota(fnumbers.begin() + i * Nx, fnumbers.begin() + i * Nx + Nx, randomStart); // if (mpiRank % 3 == 0) // { - adios2_put(bpWriter, variNumbers, &inumbers[i * Nx], - adios2_mode_sync); + adios2_put(bpWriter, variNumbers, &inumbers[i * Nx], adios2_mode_sync); //} // if (mpiRank % 3 == 1) // { - adios2_put(bpWriter, varfNumbers, &fnumbers[i * Nx], - adios2_mode_sync); + adios2_put(bpWriter, varfNumbers, &fnumbers[i * Nx], adios2_mode_sync); //} adios2_end_step(bpWriter); } @@ -99,14 +91,12 @@ void LocalAggregate1D(const std::string substreams) // if (false) { adios2_io *ioH = adios2_declare_io(adiosH, "Reader"); - adios2_engine *bpReader = - adios2_open(ioH, fname.c_str(), adios2_mode_read); + adios2_engine *bpReader = adios2_open(ioH, fname.c_str(), adios2_mode_read); adios2_step_status step_status; while (true) { - adios2_begin_step(bpReader, adios2_step_mode_read, -1, - &step_status); + adios2_begin_step(bpReader, adios2_step_mode_read, -1, &step_status); if (step_status == adios2_step_status_end_of_stream) { @@ -139,8 +129,7 @@ void LocalAggregate1D(const std::string substreams) std::vector inVarFloats(Nx); adios2_set_block_selection(varFloats, mpiRank); - adios2_get(bpReader, varFloats, inVarFloats.data(), - adios2_mode_sync); + adios2_get(bpReader, varFloats, inVarFloats.data(), adios2_mode_sync); for (size_t i = 0; i < Nx; ++i) { @@ -185,13 +174,11 @@ void LocalAggregate1DBlock0(const std::string substreams) size_t count[1]; count[0] = Nx; - adios2_variable *variNumbers = - adios2_define_variable(ioH, "ints", adios2_type_int32_t, 1, NULL, - NULL, count, adios2_constant_dims_true); + adios2_variable *variNumbers = adios2_define_variable( + ioH, "ints", adios2_type_int32_t, 1, NULL, NULL, count, adios2_constant_dims_true); - adios2_variable *varfNumbers = - adios2_define_variable(ioH, "floats", adios2_type_float, 1, NULL, - NULL, count, adios2_constant_dims_true); + adios2_variable *varfNumbers = adios2_define_variable( + ioH, "floats", adios2_type_float, 1, NULL, NULL, count, adios2_constant_dims_true); // adios2_set_parameter(ioH, "CollectiveMetadata", "Off"); adios2_set_parameter(ioH, "Profile", "Off"); @@ -201,32 +188,26 @@ void LocalAggregate1DBlock0(const std::string substreams) adios2_set_parameter(ioH, "substreams", substreams.c_str()); } - adios2_engine *bpWriter = - adios2_open(ioH, fname.c_str(), adios2_mode_write); + adios2_engine *bpWriter = adios2_open(ioH, fname.c_str(), adios2_mode_write); adios2_step_status step_status; for (size_t i = 0; i < NSteps; ++i) { - adios2_begin_step(bpWriter, adios2_step_mode_read, -1., - &step_status); + adios2_begin_step(bpWriter, adios2_step_mode_read, -1., &step_status); - std::iota(inumbers.begin() + i * Nx, inumbers.begin() + i * Nx + Nx, - mpiRank); + std::iota(inumbers.begin() + i * Nx, inumbers.begin() + i * Nx + Nx, mpiRank); const float randomStart = static_cast(rand() % mpiSize); - std::iota(fnumbers.begin() + i * Nx, fnumbers.begin() + i * Nx + Nx, - randomStart); + std::iota(fnumbers.begin() + i * Nx, fnumbers.begin() + i * Nx + Nx, randomStart); // if (mpiRank % 3 == 0) // { - adios2_put(bpWriter, variNumbers, &inumbers[i * Nx], - adios2_mode_sync); + adios2_put(bpWriter, variNumbers, &inumbers[i * Nx], adios2_mode_sync); //} // if (mpiRank % 3 == 1) // { - adios2_put(bpWriter, varfNumbers, &fnumbers[i * Nx], - adios2_mode_sync); + adios2_put(bpWriter, varfNumbers, &fnumbers[i * Nx], adios2_mode_sync); //} adios2_end_step(bpWriter); } @@ -240,8 +221,7 @@ void LocalAggregate1DBlock0(const std::string substreams) adios2_io *ioH = adios2_declare_io(adiosH, "Reader"); adios2_set_engine(ioH, "File"); - adios2_engine *bpReader = - adios2_open(ioH, fname.c_str(), adios2_mode_read); + adios2_engine *bpReader = adios2_open(ioH, fname.c_str(), adios2_mode_read); // subfile read adios2_io *ioH0 = adios2_declare_io(adiosH, "Reader0"); @@ -249,16 +229,13 @@ void LocalAggregate1DBlock0(const std::string substreams) const std::string fnameBP0 = fname + ".dir/" + fname + ".0"; - adios2_engine *bpReader0 = - adios2_open(ioH0, fnameBP0.c_str(), adios2_mode_read); + adios2_engine *bpReader0 = adios2_open(ioH0, fnameBP0.c_str(), adios2_mode_read); adios2_step_status step_status; while (true) { - adios2_begin_step(bpReader, adios2_step_mode_read, -1, - &step_status); - adios2_begin_step(bpReader0, adios2_step_mode_read, -1, - &step_status); + adios2_begin_step(bpReader, adios2_step_mode_read, -1, &step_status); + adios2_begin_step(bpReader0, adios2_step_mode_read, -1, &step_status); if (step_status == adios2_step_status_end_of_stream) { @@ -272,8 +249,7 @@ void LocalAggregate1DBlock0(const std::string substreams) adios2_variable *varFloats = adios2_inquire_variable(ioH, "floats"); adios2_variable *varInts0 = adios2_inquire_variable(ioH0, "ints"); - adios2_variable *varFloats0 = - adios2_inquire_variable(ioH0, "floats"); + adios2_variable *varFloats0 = adios2_inquire_variable(ioH0, "floats"); EXPECT_NE(varInts, nullptr); EXPECT_NE(varInts0, nullptr); @@ -285,8 +261,7 @@ void LocalAggregate1DBlock0(const std::string substreams) adios2_get(bpReader, varInts, inVarInts.data(), adios2_mode_sync); adios2_set_block_selection(varInts0, 0); - adios2_get(bpReader0, varInts0, inVarInts0.data(), - adios2_mode_sync); + adios2_get(bpReader0, varInts0, inVarInts0.data(), adios2_mode_sync); for (size_t i = 0; i < Nx; ++i) { @@ -309,12 +284,10 @@ void LocalAggregate1DBlock0(const std::string substreams) std::vector inVarFloats0(Nx); adios2_set_block_selection(varFloats, 0); - adios2_get(bpReader, varFloats, inVarFloats.data(), - adios2_mode_sync); + adios2_get(bpReader, varFloats, inVarFloats.data(), adios2_mode_sync); adios2_set_block_selection(varFloats0, 0); - adios2_get(bpReader0, varFloats0, inVarFloats0.data(), - adios2_mode_sync); + adios2_get(bpReader0, varFloats0, inVarFloats0.data(), adios2_mode_sync); for (size_t i = 0; i < Nx; ++i) { @@ -342,8 +315,7 @@ void LocalAggregate1DBlock0(const std::string substreams) adios2_finalize(adiosH); } -class BPWriteAggregateReadLocalTest -: public ::testing::TestWithParam +class BPWriteAggregateReadLocalTest : public ::testing::TestWithParam { public: BPWriteAggregateReadLocalTest() = default; @@ -352,15 +324,9 @@ class BPWriteAggregateReadLocalTest virtual void TearDown() {} }; -TEST_P(BPWriteAggregateReadLocalTest, Aggregate1D) -{ - LocalAggregate1D(GetParam()); -} +TEST_P(BPWriteAggregateReadLocalTest, Aggregate1D) { LocalAggregate1D(GetParam()); } -TEST_P(BPWriteAggregateReadLocalTest, Aggregate1DBlock0) -{ - LocalAggregate1DBlock0(GetParam()); -} +TEST_P(BPWriteAggregateReadLocalTest, Aggregate1DBlock0) { LocalAggregate1DBlock0(GetParam()); } INSTANTIATE_TEST_SUITE_P(Substreams, BPWriteAggregateReadLocalTest, ::testing::Values("1", "2", "3", "4")); diff --git a/testing/adios2/bindings/C/TestBPWriteReadMultiblock.cpp b/testing/adios2/bindings/C/TestBPWriteReadMultiblock.cpp index 4d13b2e93a..439790103b 100644 --- a/testing/adios2/bindings/C/TestBPWriteReadMultiblock.cpp +++ b/testing/adios2/bindings/C/TestBPWriteReadMultiblock.cpp @@ -68,41 +68,33 @@ TEST_F(BPWriteReadMultiblockCC, ZeroSizeBlocks) // Define variables in ioH - adios2_variable *varI8 = - adios2_define_variable(ioH, "varI8", adios2_type_int8_t, 1, shape, - start, count, adios2_constant_dims_false); - adios2_variable *varI16 = - adios2_define_variable(ioH, "varI16", adios2_type_int16_t, 1, shape, - start, count, adios2_constant_dims_false); - adios2_variable *varI32 = - adios2_define_variable(ioH, "varI32", adios2_type_int32_t, 1, shape, - start, count, adios2_constant_dims_false); - adios2_variable *varI64 = - adios2_define_variable(ioH, "varI64", adios2_type_int64_t, 1, shape, - start, count, adios2_constant_dims_false); - - adios2_variable *varU8 = - adios2_define_variable(ioH, "varU8", adios2_type_uint8_t, 1, shape, - start, count, adios2_constant_dims_false); - adios2_variable *varU16 = adios2_define_variable( - ioH, "varU16", adios2_type_uint16_t, 1, shape, start, count, - adios2_constant_dims_false); - adios2_variable *varU32 = adios2_define_variable( - ioH, "varU32", adios2_type_uint32_t, 1, shape, start, count, - adios2_constant_dims_false); - adios2_variable *varU64 = adios2_define_variable( - ioH, "varU64", adios2_type_uint64_t, 1, shape, start, count, - adios2_constant_dims_false); - - adios2_variable *varR32 = - adios2_define_variable(ioH, "varR32", adios2_type_float, 1, shape, - start, count, adios2_constant_dims_false); - adios2_variable *varR64 = - adios2_define_variable(ioH, "varR64", adios2_type_double, 1, shape, - start, count, adios2_constant_dims_false); - - adios2_engine *engineH = - adios2_open(ioH, "cmblocks.bp", adios2_mode_write); + adios2_variable *varI8 = adios2_define_variable(ioH, "varI8", adios2_type_int8_t, 1, shape, + start, count, adios2_constant_dims_false); + adios2_variable *varI16 = adios2_define_variable( + ioH, "varI16", adios2_type_int16_t, 1, shape, start, count, adios2_constant_dims_false); + adios2_variable *varI32 = adios2_define_variable( + ioH, "varI32", adios2_type_int32_t, 1, shape, start, count, adios2_constant_dims_false); + adios2_variable *varI64 = adios2_define_variable( + ioH, "varI64", adios2_type_int64_t, 1, shape, start, count, adios2_constant_dims_false); + + adios2_variable *varU8 = adios2_define_variable(ioH, "varU8", adios2_type_uint8_t, 1, shape, + start, count, adios2_constant_dims_false); + adios2_variable *varU16 = + adios2_define_variable(ioH, "varU16", adios2_type_uint16_t, 1, shape, start, count, + adios2_constant_dims_false); + adios2_variable *varU32 = + adios2_define_variable(ioH, "varU32", adios2_type_uint32_t, 1, shape, start, count, + adios2_constant_dims_false); + adios2_variable *varU64 = + adios2_define_variable(ioH, "varU64", adios2_type_uint64_t, 1, shape, start, count, + adios2_constant_dims_false); + + adios2_variable *varR32 = adios2_define_variable(ioH, "varR32", adios2_type_float, 1, shape, + start, count, adios2_constant_dims_false); + adios2_variable *varR64 = adios2_define_variable( + ioH, "varR64", adios2_type_double, 1, shape, start, count, adios2_constant_dims_false); + + adios2_engine *engineH = adios2_open(ioH, "cmblocks.bp", adios2_mode_write); for (size_t i = 0; i < steps; ++i) { @@ -110,73 +102,53 @@ TEST_F(BPWriteReadMultiblockCC, ZeroSizeBlocks) adios2_set_selection(varI8, 1, startNull.data(), countNull.data()); adios2_put(engineH, varI8, nullptr, adios2_mode_sync); - adios2_set_selection(varI8, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varI8, &data_I8[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varI8, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varI8, &data_I8[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varI16, 1, startNull.data(), countNull.data()); adios2_put(engineH, varI16, nullptr, adios2_mode_sync); - adios2_set_selection(varI16, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varI16, &data_I16[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varI16, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varI16, &data_I16[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varI32, 1, startNull.data(), countNull.data()); adios2_put(engineH, varI32, nullptr, adios2_mode_sync); - adios2_set_selection(varI32, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varI32, &data_I32[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varI32, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varI32, &data_I32[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varI64, 1, startNull.data(), countNull.data()); adios2_put(engineH, varI64, nullptr, adios2_mode_sync); - adios2_set_selection(varI64, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varI64, &data_I64[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varI64, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varI64, &data_I64[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varU8, 1, startNull.data(), countNull.data()); adios2_put(engineH, varU8, nullPointer, adios2_mode_deferred); - adios2_set_selection(varU8, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varU8, &data_U8[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varU8, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varU8, &data_U8[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varU16, 1, startNull.data(), countNull.data()); adios2_put(engineH, varU16, nullPointer, adios2_mode_deferred); - adios2_set_selection(varU16, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varU16, &data_U16[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varU16, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varU16, &data_U16[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varU32, 1, startNull.data(), countNull.data()); adios2_put(engineH, varU32, nullPointer, adios2_mode_deferred); - adios2_set_selection(varU32, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varU32, &data_U32[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varU32, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varU32, &data_U32[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varU64, 1, startNull.data(), countNull.data()); adios2_put(engineH, varU64, nullPointer, adios2_mode_deferred); - adios2_set_selection(varU64, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varU64, &data_U64[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varU64, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varU64, &data_U64[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varR32, 1, startNull.data(), countNull.data()); adios2_put(engineH, varR32, nullPointer, adios2_mode_deferred); - adios2_set_selection(varR32, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varR32, &data_R32[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varR32, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varR32, &data_R32[data_Nx / 2], adios2_mode_deferred); adios2_set_selection(varR64, 1, startNull.data(), countNull.data()); adios2_put(engineH, varR64, nullPointer, adios2_mode_deferred); - adios2_set_selection(varR64, 1, startValid.data(), - countValid.data()); - adios2_put(engineH, varR64, &data_R64[data_Nx / 2], - adios2_mode_deferred); + adios2_set_selection(varR64, 1, startValid.data(), countValid.data()); + adios2_put(engineH, varR64, &data_R64[data_Nx / 2], adios2_mode_deferred); adios2_end_step(engineH); } @@ -200,68 +172,56 @@ TEST_F(BPWriteReadMultiblockCC, ZeroSizeBlocks) std::vector inR64(data_Nx / 2); adios2_io *ioH = adios2_declare_io(adiosH, "Reader"); - adios2_engine *engineH = - adios2_open(ioH, "cmblocks.bp", adios2_mode_read); + adios2_engine *engineH = adios2_open(ioH, "cmblocks.bp", adios2_mode_read); size_t nsteps; adios2_steps(&nsteps, engineH); EXPECT_EQ(nsteps, steps); - while (adios2_begin_step(engineH, adios2_step_mode_read, -1., - &status) == adios2_error_none) + while (adios2_begin_step(engineH, adios2_step_mode_read, -1., &status) == adios2_error_none) { if (status == adios2_step_status_end_of_stream) { break; } adios2_variable *varI8 = adios2_inquire_variable(ioH, "varI8"); - adios2_set_selection(varI8, 1, startValid.data(), - countValid.data()); + adios2_set_selection(varI8, 1, startValid.data(), countValid.data()); adios2_get(engineH, varI8, inI8.data(), adios2_mode_deferred); adios2_variable *varI16 = adios2_inquire_variable(ioH, "varI16"); - adios2_set_selection(varI16, 1, startValid.data(), - countValid.data()); + adios2_set_selection(varI16, 1, startValid.data(), countValid.data()); adios2_get(engineH, varI16, inI16.data(), adios2_mode_deferred); adios2_variable *varI32 = adios2_inquire_variable(ioH, "varI32"); - adios2_set_selection(varI32, 1, startValid.data(), - countValid.data()); + adios2_set_selection(varI32, 1, startValid.data(), countValid.data()); adios2_get(engineH, varI32, inI32.data(), adios2_mode_deferred); adios2_variable *varI64 = adios2_inquire_variable(ioH, "varI64"); - adios2_set_selection(varI64, 1, startValid.data(), - countValid.data()); + adios2_set_selection(varI64, 1, startValid.data(), countValid.data()); adios2_get(engineH, varI64, inI64.data(), adios2_mode_deferred); adios2_variable *varU8 = adios2_inquire_variable(ioH, "varU8"); - adios2_set_selection(varU8, 1, startValid.data(), - countValid.data()); + adios2_set_selection(varU8, 1, startValid.data(), countValid.data()); adios2_get(engineH, varU8, inU8.data(), adios2_mode_deferred); adios2_variable *varU16 = adios2_inquire_variable(ioH, "varU16"); - adios2_set_selection(varU16, 1, startValid.data(), - countValid.data()); + adios2_set_selection(varU16, 1, startValid.data(), countValid.data()); adios2_get(engineH, varU16, inU16.data(), adios2_mode_deferred); adios2_variable *varU32 = adios2_inquire_variable(ioH, "varU32"); - adios2_set_selection(varU32, 1, startValid.data(), - countValid.data()); + adios2_set_selection(varU32, 1, startValid.data(), countValid.data()); adios2_get(engineH, varU32, inU32.data(), adios2_mode_deferred); adios2_variable *varU64 = adios2_inquire_variable(ioH, "varU64"); - adios2_set_selection(varU64, 1, startValid.data(), - countValid.data()); + adios2_set_selection(varU64, 1, startValid.data(), countValid.data()); adios2_get(engineH, varU64, inU64.data(), adios2_mode_deferred); adios2_variable *varR32 = adios2_inquire_variable(ioH, "varR32"); - adios2_set_selection(varR32, 1, startValid.data(), - countValid.data()); + adios2_set_selection(varR32, 1, startValid.data(), countValid.data()); adios2_get(engineH, varR32, inR32.data(), adios2_mode_deferred); adios2_variable *varR64 = adios2_inquire_variable(ioH, "varR64"); - adios2_set_selection(varR64, 1, startValid.data(), - countValid.data()); + adios2_set_selection(varR64, 1, startValid.data(), countValid.data()); adios2_get(engineH, varR64, inR64.data(), adios2_mode_deferred); adios2_perform_gets(engineH); diff --git a/testing/adios2/bindings/C/TestBPWriteTypes.cpp b/testing/adios2/bindings/C/TestBPWriteTypes.cpp index fb6d4fa9b2..94b1214b51 100644 --- a/testing/adios2/bindings/C/TestBPWriteTypes.cpp +++ b/testing/adios2/bindings/C/TestBPWriteTypes.cpp @@ -101,41 +101,36 @@ TEST_F(ADIOS2_C_API, ADIOS2BPWriteTypes) // define attribute const char *strarray[] = {"first", "second", "third", "fourth"}; - adios2_define_attribute_array(ioH, "strarray", adios2_type_string, - strarray, 4); + adios2_define_attribute_array(ioH, "strarray", adios2_type_string, strarray, 4); - adios2_define_attribute(ioH, "strvalue", adios2_type_string, - "Hello Attribute"); + adios2_define_attribute(ioH, "strvalue", adios2_type_string, "Hello Attribute"); // Define variables in ioH { - adios2_define_variable(ioH, "varStr", adios2_type_string, 0, NULL, - NULL, NULL, adios2_constant_dims_true); - adios2_define_variable(ioH, "varI8", adios2_type_int8_t, 1, shape, - start, count, adios2_constant_dims_true); - adios2_define_variable(ioH, "varI16", adios2_type_int16_t, 1, shape, - start, count, adios2_constant_dims_true); - adios2_define_variable(ioH, "varI32", adios2_type_int32_t, 1, shape, - start, count, adios2_constant_dims_true); - adios2_define_variable(ioH, "varI64", adios2_type_int64_t, 1, shape, - start, count, adios2_constant_dims_true); - - adios2_define_variable(ioH, "varU8", adios2_type_uint8_t, 1, shape, - start, count, adios2_constant_dims_true); - adios2_define_variable(ioH, "varU16", adios2_type_uint16_t, 1, - shape, start, count, + adios2_define_variable(ioH, "varStr", adios2_type_string, 0, NULL, NULL, NULL, adios2_constant_dims_true); - adios2_define_variable(ioH, "varU32", adios2_type_uint32_t, 1, - shape, start, count, + adios2_define_variable(ioH, "varI8", adios2_type_int8_t, 1, shape, start, count, adios2_constant_dims_true); - adios2_define_variable(ioH, "varU64", adios2_type_uint64_t, 1, - shape, start, count, + adios2_define_variable(ioH, "varI16", adios2_type_int16_t, 1, shape, start, count, + adios2_constant_dims_true); + adios2_define_variable(ioH, "varI32", adios2_type_int32_t, 1, shape, start, count, + adios2_constant_dims_true); + adios2_define_variable(ioH, "varI64", adios2_type_int64_t, 1, shape, start, count, adios2_constant_dims_true); - adios2_define_variable(ioH, "varR32", adios2_type_float, 1, shape, - start, count, adios2_constant_dims_true); - adios2_define_variable(ioH, "varR64", adios2_type_double, 1, shape, - start, count, adios2_constant_dims_true); + adios2_define_variable(ioH, "varU8", adios2_type_uint8_t, 1, shape, start, count, + adios2_constant_dims_true); + adios2_define_variable(ioH, "varU16", adios2_type_uint16_t, 1, shape, start, count, + adios2_constant_dims_true); + adios2_define_variable(ioH, "varU32", adios2_type_uint32_t, 1, shape, start, count, + adios2_constant_dims_true); + adios2_define_variable(ioH, "varU64", adios2_type_uint64_t, 1, shape, start, count, + adios2_constant_dims_true); + + adios2_define_variable(ioH, "varR32", adios2_type_float, 1, shape, start, count, + adios2_constant_dims_true); + adios2_define_variable(ioH, "varR64", adios2_type_double, 1, shape, start, count, + adios2_constant_dims_true); } // inquire variables adios2_variable *varStr = adios2_inquire_variable(ioH, "varStr"); @@ -192,8 +187,7 @@ TEST_F(ADIOS2_C_API, ADIOS2BPWriteTypes) #endif { adios2_io *ioH = adios2_declare_io(adiosH, "Reader"); - adios2_engine *engineH = - adios2_open(ioH, fname, adios2_mode_readRandomAccess); + adios2_engine *engineH = adios2_open(ioH, fname, adios2_mode_readRandomAccess); size_t steps; adios2_steps(&steps, engineH); @@ -212,8 +206,7 @@ TEST_F(ADIOS2_C_API, ADIOS2BPWriteTypes) size_t type_str_size; // single - adios2_attribute *attrSingle = - adios2_inquire_attribute(ioH, "strvalue"); + adios2_attribute *attrSingle = adios2_inquire_attribute(ioH, "strvalue"); adios2_attribute_is_value(&result, attrSingle); EXPECT_EQ(result, adios2_true); @@ -259,8 +252,7 @@ TEST_F(ADIOS2_C_API, ADIOS2BPWriteTypes) } adios2_attribute_data(dataArray, &elements, attrArray); - const std::vector dataVector(dataArray, - dataArray + elements); + const std::vector dataVector(dataArray, dataArray + elements); EXPECT_EQ(dataVector[0], "first"); EXPECT_EQ(dataVector[1], "second"); EXPECT_EQ(dataVector[2], "third"); @@ -460,13 +452,11 @@ TEST_F(ADIOS2_C_API_IO, ReturnedStrings) size_t shape[1] = {2}; size_t start[1] = {0}; size_t count[1] = {2}; - adios2_variable *var = - adios2_define_variable(ioH, "varI8", adios2_type_int8_t, 1, shape, - start, count, adios2_constant_dims_true); + adios2_variable *var = adios2_define_variable(ioH, "varI8", adios2_type_int8_t, 1, shape, start, + count, adios2_constant_dims_true); int32_t value = 99; - adios2_attribute *attr = - adios2_define_attribute(ioH, "intAttr", adios2_type_int32_t, &value); + adios2_attribute *attr = adios2_define_attribute(ioH, "intAttr", adios2_type_int32_t, &value); #ifdef ADIOS2_HAVE_BZIP2 adios2_operator *op = adios2_define_operator(adiosH, "testOp", "bzip2"); diff --git a/testing/adios2/bindings/C/TestNullWriteRead.cpp b/testing/adios2/bindings/C/TestNullWriteRead.cpp index aefb29aba4..3ea6322da1 100644 --- a/testing/adios2/bindings/C/TestNullWriteRead.cpp +++ b/testing/adios2/bindings/C/TestNullWriteRead.cpp @@ -55,20 +55,18 @@ TEST_F(NullWriteReadTests_C_API, NullWriteRead1D8) const std::vector count{Nx}; std::vector data(Nx, 1.0); - adios2_variable *var = adios2_define_variable( - io, "r64", adios2_type_double, 1, shape.data(), start.data(), - count.data(), adios2_constant_dims_true); + adios2_variable *var = + adios2_define_variable(io, "r64", adios2_type_double, 1, shape.data(), start.data(), + count.data(), adios2_constant_dims_true); adios2_set_engine(io, "NULL"); - adios2_engine *nullWriter = - adios2_open(io, fname.data(), adios2_mode_write); + adios2_engine *nullWriter = adios2_open(io, fname.data(), adios2_mode_write); adios2_step_status status; for (size_t step = 0; step < NSteps; ++step) { - adios2_begin_step(nullWriter, adios2_step_mode_append, -1., - &status); + adios2_begin_step(nullWriter, adios2_step_mode_append, -1., &status); adios2_put(nullWriter, var, data.data(), adios2_mode_deferred); adios2_perform_puts(nullWriter); adios2_end_step(nullWriter); @@ -82,8 +80,7 @@ TEST_F(NullWriteReadTests_C_API, NullWriteRead1D8) adios2_io *io = adios2_declare_io(adios, "ReadNull"); adios2_set_engine(io, "null"); - adios2_engine *nullReader = - adios2_open(io, fname.data(), adios2_mode_read); + adios2_engine *nullReader = adios2_open(io, fname.data(), adios2_mode_read); std::vector R64; @@ -101,8 +98,7 @@ TEST_F(NullWriteReadTests_C_API, NullWriteRead1D8) adios2_current_step(¤tStep, nullReader); EXPECT_EQ(currentStep, t); - auto ret = - adios2_get(nullReader, var, nullptr, adios2_mode_deferred); + auto ret = adios2_get(nullReader, var, nullptr, adios2_mode_deferred); EXPECT_EQ(ret, 1); adios2_perform_gets(nullReader); adios2_end_step(nullReader); diff --git a/testing/adios2/bindings/fortran/TestF2C_BPReadFBlocks.cpp b/testing/adios2/bindings/fortran/TestF2C_BPReadFBlocks.cpp index 1e64d47538..a897bc0b07 100644 --- a/testing/adios2/bindings/fortran/TestF2C_BPReadFBlocks.cpp +++ b/testing/adios2/bindings/fortran/TestF2C_BPReadFBlocks.cpp @@ -41,8 +41,7 @@ TEST_F(BPReadFBlocks, FHeatMap2D) while (bpReader.BeginStep() == adios2::StepStatus::OK) { - adios2::Variable var_r32 = - io.InquireVariable("temperatures_r4"); + adios2::Variable var_r32 = io.InquireVariable("temperatures_r4"); EXPECT_TRUE(var_r32); EXPECT_EQ(var_r32.Shape().size(), 2); @@ -57,8 +56,7 @@ TEST_F(BPReadFBlocks, FHeatMap2D) if (i == static_cast(mpiRank)) { EXPECT_EQ(r32Blocks[i].Start[0], - r32Blocks[i].Count[0] * - static_cast(mpiRank)); + r32Blocks[i].Count[0] * static_cast(mpiRank)); EXPECT_EQ(r32Blocks[i].Start[1], 0); EXPECT_EQ(r32Blocks[i].Count[1], var_r32.Shape()[1]); @@ -91,8 +89,7 @@ TEST_F(BPReadFBlocks, FHeatMap3D) while (bpReader.BeginStep() == adios2::StepStatus::OK) { - adios2::Variable var_r32 = - io.InquireVariable("temperatures_r4"); + adios2::Variable var_r32 = io.InquireVariable("temperatures_r4"); EXPECT_TRUE(var_r32); EXPECT_EQ(var_r32.Shape().size(), 3); @@ -107,8 +104,7 @@ TEST_F(BPReadFBlocks, FHeatMap3D) if (i == static_cast(mpiRank)) { EXPECT_EQ(r32Blocks[i].Start[0], - r32Blocks[i].Count[0] * - static_cast(mpiRank)); + r32Blocks[i].Count[0] * static_cast(mpiRank)); EXPECT_EQ(r32Blocks[i].Start[1], 0); EXPECT_EQ(r32Blocks[i].Count[1], var_r32.Shape()[1]); diff --git a/testing/adios2/engine/SmallTestData.h b/testing/adios2/engine/SmallTestData.h index 4b024a36b5..41a119eb2c 100644 --- a/testing/adios2/engine/SmallTestData.h +++ b/testing/adios2/engine/SmallTestData.h @@ -31,29 +31,22 @@ struct SmallTestData std::vector S3 = {"one", "two", "three"}; std::array I8 = {{0, 1, -2, 3, -4, 5, -6, 7, -8, 9}}; - std::array I16 = { - {512, 513, -510, 515, -508, 517, -506, 519, -504, 521}}; - std::array I32 = {{131072, 131073, -131070, 131075, -131068, - 131077, -131066, 131079, -131064, 131081}}; - std::array I64 = { - {8589934592, 8589934593, -8589934590, 8589934595, -8589934588, - 8589934597, -8589934586, 8589934599, -8589934584, 8589934601}}; - std::array U8 = { - {128, 129, 130, 131, 132, 133, 134, 135, 136, 137}}; + std::array I16 = {{512, 513, -510, 515, -508, 517, -506, 519, -504, 521}}; + std::array I32 = { + {131072, 131073, -131070, 131075, -131068, 131077, -131066, 131079, -131064, 131081}}; + std::array I64 = {{8589934592, 8589934593, -8589934590, 8589934595, -8589934588, + 8589934597, -8589934586, 8589934599, -8589934584, 8589934601}}; + std::array U8 = {{128, 129, 130, 131, 132, 133, 134, 135, 136, 137}}; std::array U16 = { {32768, 32769, 32770, 32771, 32772, 32773, 32774, 32775, 32776, 32777}}; - std::array U32 = { - {2147483648, 2147483649, 2147483650, 2147483651, 2147483652, 2147483653, - 2147483654, 2147483655, 2147483656, 2147483657}}; + std::array U32 = {{2147483648, 2147483649, 2147483650, 2147483651, 2147483652, + 2147483653, 2147483654, 2147483655, 2147483656, 2147483657}}; std::array U64 = { - {9223372036854775808UL, 9223372036854775809UL, 9223372036854775810UL, - 9223372036854775811UL, 9223372036854775812UL, 9223372036854775813UL, - 9223372036854775814UL, 9223372036854775815UL, 9223372036854775816UL, - 9223372036854775817UL}}; - std::array R32 = { - {0.1f, 1.1f, 2.1f, 3.1f, 4.1f, 5.1f, 6.1f, 7.1f, 8.1f, 9.1f}}; - std::array R64 = { - {10.2, 11.2, 12.2, 13.2, 14.2, 15.2, 16.2, 17.2, 18.2, 19.2}}; + {9223372036854775808UL, 9223372036854775809UL, 9223372036854775810UL, 9223372036854775811UL, + 9223372036854775812UL, 9223372036854775813UL, 9223372036854775814UL, 9223372036854775815UL, + 9223372036854775816UL, 9223372036854775817UL}}; + std::array R32 = {{0.1f, 1.1f, 2.1f, 3.1f, 4.1f, 5.1f, 6.1f, 7.1f, 8.1f, 9.1f}}; + std::array R64 = {{10.2, 11.2, 12.2, 13.2, 14.2, 15.2, 16.2, 17.2, 18.2, 19.2}}; std::array R128 = { {410.2, 411.2, 412.2, 413.2, 414.2, 415.2, 416.2, 417.2, 418.2, 419.2}}; @@ -71,14 +64,11 @@ struct SmallTestData std::complex(16.2, 17.2), std::complex(17.2, 18.2), std::complex(18.2, 19.2), std::complex(19.2, 20.2)}}; - std::array CHAR = { - {'a', 'b', 'c', 'y', 'z', 'A', 'B', 'C', 'Y', 'Z'}}; - std::array TF = { - {true, false, true, true, false, false, true, false, false, true}}; + std::array CHAR = {{'a', 'b', 'c', 'y', 'z', 'A', 'B', 'C', 'Y', 'Z'}}; + std::array TF = {{true, false, true, true, false, false, true, false, false, true}}; }; -SmallTestData generateNewSmallTestData(SmallTestData in, int step, int rank, - int size) +SmallTestData generateNewSmallTestData(SmallTestData in, int step, int rank, int size) { int j = rank + 1 + step * size; std::for_each(in.I8.begin(), in.I8.end(), [&](int8_t &v) { v += j; }); @@ -91,8 +81,7 @@ SmallTestData generateNewSmallTestData(SmallTestData in, int step, int rank, std::for_each(in.U64.begin(), in.U64.end(), [&](uint64_t &v) { v += j; }); std::for_each(in.R32.begin(), in.R32.end(), [&](float &v) { v += j; }); std::for_each(in.R64.begin(), in.R64.end(), [&](double &v) { v += j; }); - std::for_each(in.R128.begin(), in.R128.end(), - [&](long double &v) { v += j; }); + std::for_each(in.R128.begin(), in.R128.end(), [&](long double &v) { v += j; }); std::for_each(in.CR32.begin(), in.CR32.end(), [&](std::complex &v) { v.real(v.real() + static_cast(j)); @@ -133,8 +122,7 @@ void UpdateSmallTestData(SmallTestData &in, int step, int rank, int size) std::for_each(in.U64.begin(), in.U64.end(), [&](uint64_t &v) { v += j; }); std::for_each(in.R32.begin(), in.R32.end(), [&](float &v) { v += j; }); std::for_each(in.R64.begin(), in.R64.end(), [&](double &v) { v += j; }); - std::for_each(in.R128.begin(), in.R128.end(), - [&](long double &v) { v += j; }); + std::for_each(in.R128.begin(), in.R128.end(), [&](long double &v) { v += j; }); std::for_each(in.CR32.begin(), in.CR32.end(), [&](std::complex &v) { v.real(v.real() + static_cast(j)); diff --git a/testing/adios2/engine/bp/TestBPAppendAfterSteps.cpp b/testing/adios2/engine/bp/TestBPAppendAfterSteps.cpp index 9e072ca330..64da191b18 100644 --- a/testing/adios2/engine/bp/TestBPAppendAfterSteps.cpp +++ b/testing/adios2/engine/bp/TestBPAppendAfterSteps.cpp @@ -57,9 +57,8 @@ class BPAppendAfterSteps : public ::testing::Test } }; -class BPAppendAfterStepsP -: public BPAppendAfterSteps, - public ::testing::WithParamInterface> +class BPAppendAfterStepsP : public BPAppendAfterSteps, + public ::testing::WithParamInterface> { protected: size_t GetSteps() { return std::get<0>(GetParam()); }; @@ -85,13 +84,12 @@ TEST_P(BPAppendAfterStepsP, Test) #endif std::cout << "Test AppendAfterSteps parameter with writing " << nSteps - << " steps, then appending " << nSteps - << " steps again with parameter " << nAppendAfterSteps - << std::endl; + << " steps, then appending " << nSteps << " steps again with parameter " + << nAppendAfterSteps << std::endl; - std::string filename = "AppendAfterSteps_N" + std::to_string(mpiSize) + - "_Steps" + std::to_string(nSteps) + "_Append_" + - std::to_string(nAppendAfterSteps) + ".bp"; + std::string filename = "AppendAfterSteps_N" + std::to_string(mpiSize) + "_Steps" + + std::to_string(nSteps) + "_Append_" + std::to_string(nAppendAfterSteps) + + ".bp"; size_t totalNSteps = 0; { @@ -118,8 +116,7 @@ TEST_P(BPAppendAfterStepsP, Test) engine.Close(); /* Write again nSteps steps but append to file at nAppendAfterSteps*/ - ioWrite.SetParameter("AppendAfterSteps", - std::to_string(nAppendAfterSteps)); + ioWrite.SetParameter("AppendAfterSteps", std::to_string(nAppendAfterSteps)); engine = ioWrite.Open(filename, adios2::Mode::Append); size_t beginStep = 0; @@ -158,16 +155,14 @@ TEST_P(BPAppendAfterStepsP, Test) { adios2::IO ioRead = adios.DeclareIO("TestIORead"); ioRead.SetEngine(engineName); - adios2::Engine engine_s = - ioRead.Open(filename, adios2::Mode::ReadRandomAccess); + adios2::Engine engine_s = ioRead.Open(filename, adios2::Mode::ReadRandomAccess); EXPECT_TRUE(engine_s); const size_t nsteps = engine_s.Steps(); EXPECT_EQ(nsteps, totalNSteps); adios2::Variable var = ioRead.InquireVariable("var"); - adios2::Variable varStep = - ioRead.InquireVariable("step"); + adios2::Variable varStep = ioRead.InquireVariable("step"); for (size_t readStep = 0; readStep < totalNSteps; readStep++) { @@ -184,8 +179,7 @@ TEST_P(BPAppendAfterStepsP, Test) EXPECT_EQ(stepInFile, readStep); std::string aname = "a" + std::to_string(readStep); - adios2::Attribute a = - ioRead.InquireAttribute(aname); + adios2::Attribute a = ioRead.InquireAttribute(aname); size_t stepInAttribute = a.Data()[0]; EXPECT_EQ(stepInAttribute, readStep); } @@ -197,13 +191,12 @@ TEST_P(BPAppendAfterStepsP, Test) #endif } -INSTANTIATE_TEST_SUITE_P( - BPAppendAfterSteps, BPAppendAfterStepsP, - ::testing::Values(std::make_tuple(1, 0), std::make_tuple(1, 1), - std::make_tuple(2, 0), std::make_tuple(2, 1), - std::make_tuple(2, 2), std::make_tuple(2, 3), - std::make_tuple(2, 1), std::make_tuple(2, -1), - std::make_tuple(2, -2), std::make_tuple(2, -3))); +INSTANTIATE_TEST_SUITE_P(BPAppendAfterSteps, BPAppendAfterStepsP, + ::testing::Values(std::make_tuple(1, 0), std::make_tuple(1, 1), + std::make_tuple(2, 0), std::make_tuple(2, 1), + std::make_tuple(2, 2), std::make_tuple(2, 3), + std::make_tuple(2, 1), std::make_tuple(2, -1), + std::make_tuple(2, -2), std::make_tuple(2, -3))); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/bp/TestBPBufferSize.cpp b/testing/adios2/engine/bp/TestBPBufferSize.cpp index 5b98b236ef..82764552f5 100644 --- a/testing/adios2/engine/bp/TestBPBufferSize.cpp +++ b/testing/adios2/engine/bp/TestBPBufferSize.cpp @@ -137,17 +137,13 @@ TEST_F(BPBufferSizeTest, SyncDeferredIdenticalUsage) for (size_t step = 0; step < NSteps; ++step) { engine.BeginStep(); - bufsize_sync_beginstep[step] = - GetAndPrintBufferSize(engine, "After BeginStep():"); + bufsize_sync_beginstep[step] = GetAndPrintBufferSize(engine, "After BeginStep():"); engine.Put(var1, data.data(), adios2::Mode::Sync); - bufsize_sync_v1[step] = - GetAndPrintBufferSize(engine, "After Put(v1, Sync):", step); + bufsize_sync_v1[step] = GetAndPrintBufferSize(engine, "After Put(v1, Sync):", step); engine.Put(var2, data.data(), adios2::Mode::Sync); - bufsize_sync_v2[step] = - GetAndPrintBufferSize(engine, "After Put(v2, Sync):", step); + bufsize_sync_v2[step] = GetAndPrintBufferSize(engine, "After Put(v2, Sync):", step); engine.Put(var3, data.data(), adios2::Mode::Sync); - bufsize_sync_v3[step] = - GetAndPrintBufferSize(engine, "After Put(v3, Sync):", step); + bufsize_sync_v3[step] = GetAndPrintBufferSize(engine, "After Put(v3, Sync):", step); engine.EndStep(); bufsize_sync_endstep[step] = GetAndPrintBufferSize(engine, "After EndStep():", step); @@ -172,14 +168,14 @@ TEST_F(BPBufferSizeTest, SyncDeferredIdenticalUsage) bufsize_deferred_beginstep[step] = GetAndPrintBufferSize(engine, "After BeginStep():"); engine.Put(var1, data.data(), adios2::Mode::Deferred); - bufsize_deferred_v1[step] = GetAndPrintBufferSize( - engine, "After Put(v1, Deferred):", step); + bufsize_deferred_v1[step] = + GetAndPrintBufferSize(engine, "After Put(v1, Deferred):", step); engine.Put(var2, data.data(), adios2::Mode::Deferred); - bufsize_deferred_v2[step] = GetAndPrintBufferSize( - engine, "After Put(v2, Deferred):", step); + bufsize_deferred_v2[step] = + GetAndPrintBufferSize(engine, "After Put(v2, Deferred):", step); engine.Put(var3, data.data(), adios2::Mode::Deferred); - bufsize_deferred_v3[step] = GetAndPrintBufferSize( - engine, "After Put(v3, Deferred):", step); + bufsize_deferred_v3[step] = + GetAndPrintBufferSize(engine, "After Put(v3, Deferred):", step); engine.EndStep(); bufsize_deferred_endstep[step] = GetAndPrintBufferSize(engine, "After EndStep():", step); @@ -195,8 +191,7 @@ TEST_F(BPBufferSizeTest, SyncDeferredIdenticalUsage) size_t bufsize_deferred_pp_v3[NSteps]; size_t bufsize_deferred_pp_endstep[NSteps]; { - adios2::Engine engine = - io.Open(fnameDeferredPP, adios2::Mode::Write); + adios2::Engine engine = io.Open(fnameDeferredPP, adios2::Mode::Write); GetAndPrintBufferSize(engine, "After Open():"); for (size_t step = 0; step < NSteps; ++step) @@ -206,16 +201,16 @@ TEST_F(BPBufferSizeTest, SyncDeferredIdenticalUsage) GetAndPrintBufferSize(engine, "After BeginStep():"); engine.Put(var1, data.data(), adios2::Mode::Deferred); engine.PerformPuts(); - bufsize_deferred_pp_v1[step] = GetAndPrintBufferSize( - engine, "After Put(v1, Def)+PerformPuts():", step); + bufsize_deferred_pp_v1[step] = + GetAndPrintBufferSize(engine, "After Put(v1, Def)+PerformPuts():", step); engine.Put(var2, data.data(), adios2::Mode::Deferred); engine.PerformPuts(); - bufsize_deferred_pp_v2[step] = GetAndPrintBufferSize( - engine, "After Put(v2, Def)+PerformPuts():", step); + bufsize_deferred_pp_v2[step] = + GetAndPrintBufferSize(engine, "After Put(v2, Def)+PerformPuts():", step); engine.Put(var3, data.data(), adios2::Mode::Deferred); engine.PerformPuts(); - bufsize_deferred_pp_v3[step] = GetAndPrintBufferSize( - engine, "After Put(v3, Def)+PerformPuts():", step); + bufsize_deferred_pp_v3[step] = + GetAndPrintBufferSize(engine, "After Put(v3, Def)+PerformPuts():", step); engine.EndStep(); bufsize_deferred_pp_endstep[step] = GetAndPrintBufferSize(engine, "After EndStep():", step); @@ -231,8 +226,7 @@ TEST_F(BPBufferSizeTest, SyncDeferredIdenticalUsage) * size * */ const size_t TotalDataSize = Nx * sizeof(double) * 3; - const size_t MaxExtra = - 18 * 1024 * 1024; /* 18MB extra allowed in buffer */ + const size_t MaxExtra = 18 * 1024 * 1024; /* 18MB extra allowed in buffer */ for (size_t step = 0; step < NSteps; ++step) { EXPECT_LT(bufsize_sync_beginstep[step], TotalDataSize + MaxExtra); @@ -241,20 +235,17 @@ TEST_F(BPBufferSizeTest, SyncDeferredIdenticalUsage) EXPECT_LT(bufsize_sync_v3[step], TotalDataSize + MaxExtra); EXPECT_LT(bufsize_sync_endstep[step], TotalDataSize + MaxExtra); - EXPECT_LT(bufsize_deferred_beginstep[step], - TotalDataSize + MaxExtra); + EXPECT_LT(bufsize_deferred_beginstep[step], TotalDataSize + MaxExtra); EXPECT_LT(bufsize_deferred_v1[step], TotalDataSize + MaxExtra); EXPECT_LT(bufsize_deferred_v2[step], TotalDataSize + MaxExtra); EXPECT_LT(bufsize_deferred_v3[step], TotalDataSize + MaxExtra); EXPECT_LT(bufsize_deferred_endstep[step], TotalDataSize + MaxExtra); - EXPECT_LT(bufsize_deferred_pp_beginstep[step], - TotalDataSize + MaxExtra); + EXPECT_LT(bufsize_deferred_pp_beginstep[step], TotalDataSize + MaxExtra); EXPECT_LT(bufsize_deferred_pp_v1[step], TotalDataSize + MaxExtra); EXPECT_LT(bufsize_deferred_pp_v2[step], TotalDataSize + MaxExtra); EXPECT_LT(bufsize_deferred_pp_v3[step], TotalDataSize + MaxExtra); - EXPECT_LT(bufsize_deferred_pp_endstep[step], - TotalDataSize + MaxExtra); + EXPECT_LT(bufsize_deferred_pp_endstep[step], TotalDataSize + MaxExtra); } } } diff --git a/testing/adios2/engine/bp/TestBPChangingShape.cpp b/testing/adios2/engine/bp/TestBPChangingShape.cpp index 9546f094b7..9beceadb8b 100644 --- a/testing/adios2/engine/bp/TestBPChangingShape.cpp +++ b/testing/adios2/engine/bp/TestBPChangingShape.cpp @@ -55,8 +55,7 @@ TEST_F(BPChangingShape, BPWriteReadShape2D) const size_t dim0 = static_cast(nproc); const size_t off0 = static_cast(rank); - auto var = - outIO.DefineVariable("v", {dim0, 1}, {off0, 0}, {1, 1}); + auto var = outIO.DefineVariable("v", {dim0, 1}, {off0, 0}, {1, 1}); std::vector buf(nsteps, 0.0); for (size_t i = 0; i < buf.size(); i++) @@ -77,8 +76,8 @@ TEST_F(BPChangingShape, BPWriteReadShape2D) if (!rank) { - std::cout << "Step " << i << " shape (" << var.Shape()[0] - << ", " << var.Shape()[1] << ")" << std::endl; + std::cout << "Step " << i << " shape (" << var.Shape()[0] << ", " << var.Shape()[1] + << ")" << std::endl; } writer.Put(var, buf.data()); @@ -101,15 +100,13 @@ TEST_F(BPChangingShape, BPWriteReadShape2D) if (!rank) { - std::cout << "Reading as stream with BeginStep/EndStep:" - << std::endl; + std::cout << "Reading as stream with BeginStep/EndStep:" << std::endl; } int i = 0; while (true) { - adios2::StepStatus status = - reader.BeginStep(adios2::StepMode::Read); + adios2::StepStatus status = reader.BeginStep(adios2::StepMode::Read); if (status != adios2::StepStatus::OK) { @@ -125,8 +122,8 @@ TEST_F(BPChangingShape, BPWriteReadShape2D) if (!rank) { - std::cout << "Step " << i << " shape (" << var.Shape()[0] - << ", " << var.Shape()[1] << ")" << std::endl; + std::cout << "Step " << i << " shape (" << var.Shape()[0] << ", " << var.Shape()[1] + << ")" << std::endl; } EXPECT_EQ(var.Shape()[0], nproc); @@ -147,8 +144,7 @@ TEST_F(BPChangingShape, BPWriteReadShape2D) { inIO.SetEngine(engineName); } - adios2::Engine reader = - inIO.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine reader = inIO.Open(fname, adios2::Mode::ReadRandomAccess); if (!rank) { @@ -164,8 +160,8 @@ TEST_F(BPChangingShape, BPWriteReadShape2D) if (!rank) { - std::cout << "Step " << i << " shape (" << var.Shape()[0] - << ", " << var.Shape()[1] << ")" << std::endl; + std::cout << "Step " << i << " shape (" << var.Shape()[0] << ", " << var.Shape()[1] + << ")" << std::endl; } size_t expected_shape = i + 1; EXPECT_EQ(var.Shape()[0], nproc); diff --git a/testing/adios2/engine/bp/TestBPChangingShapeWithinStep.cpp b/testing/adios2/engine/bp/TestBPChangingShapeWithinStep.cpp index ba1388fe69..b8392cc92f 100644 --- a/testing/adios2/engine/bp/TestBPChangingShapeWithinStep.cpp +++ b/testing/adios2/engine/bp/TestBPChangingShapeWithinStep.cpp @@ -38,8 +38,7 @@ TEST_P(BPChangingShapeWithinStep, MultiBlock) auto params = std::get<1>(GetParam()); double epsilon = std::get<2>(GetParam()); - const std::string fname("BPChangingShapeMultiblock_" + operatorName + - ".bp"); + const std::string fname("BPChangingShapeMultiblock_" + operatorName + ".bp"); const int nsteps = 2; const std::vector nblocks = {2, 3}; const int N = 16384; // size of one block (should be big enough to compress) @@ -67,8 +66,7 @@ TEST_P(BPChangingShapeWithinStep, MultiBlock) const size_t dim0 = static_cast(nproc); const size_t off0 = static_cast(rank); - auto var = - outIO.DefineVariable("v", {dim0, 1}, {off0, 0}, {1, 1}); + auto var = outIO.DefineVariable("v", {dim0, 1}, {off0, 0}, {1, 1}); if (operatorName != "none") { @@ -89,8 +87,7 @@ TEST_P(BPChangingShapeWithinStep, MultiBlock) { writer.BeginStep(); - double value = - static_cast(rank) + static_cast(i + 1) / 10.0; + double value = static_cast(rank) + static_cast(i + 1) / 10.0; for (size_t j = 0; j < static_cast(nblocks[i]); j++) { @@ -100,10 +97,10 @@ TEST_P(BPChangingShapeWithinStep, MultiBlock) if (!rank) { - std::cout << "Step " << i << " block " << j << " shape (" - << var.Shape()[0] << ", " << var.Shape()[1] << ")" - << " value = " << value << " data[] = " << data[0] - << " .. " << data[N - 1] << std::endl; + std::cout << "Step " << i << " block " << j << " shape (" << var.Shape()[0] + << ", " << var.Shape()[1] << ")" + << " value = " << value << " data[] = " << data[0] << " .. " + << data[N - 1] << std::endl; } writer.Put(var, data.data(), adios2::Mode::Sync); @@ -126,15 +123,13 @@ TEST_P(BPChangingShapeWithinStep, MultiBlock) if (!rank) { - std::cout << "Reading as stream with BeginStep/EndStep:" - << std::endl; + std::cout << "Reading as stream with BeginStep/EndStep:" << std::endl; } int step = 0; while (true) { - adios2::StepStatus status = - reader.BeginStep(adios2::StepMode::Read); + adios2::StepStatus status = reader.BeginStep(adios2::StepMode::Read); if (status != adios2::StepStatus::OK) { @@ -149,15 +144,14 @@ TEST_P(BPChangingShapeWithinStep, MultiBlock) if (!rank) { - std::cout << "Step " << step << " shape (" << var.Shape()[0] - << ", " << var.Shape()[1] << ")" << std::endl; + std::cout << "Step " << step << " shape (" << var.Shape()[0] << ", " + << var.Shape()[1] << ")" << std::endl; } EXPECT_EQ(var.Shape()[0], nproc); EXPECT_EQ(var.Shape()[1], expected_shape); - var.SetSelection( - {{0, 0}, {static_cast(nproc), expected_shape}}); + var.SetSelection({{0, 0}, {static_cast(nproc), expected_shape}}); // Check data on rank 0 if (!rank) @@ -169,14 +163,11 @@ TEST_P(BPChangingShapeWithinStep, MultiBlock) for (int i = 0; i < nproc; i++) { - double value = static_cast(i) + - static_cast(step + 1) / 10.0; + double value = static_cast(i) + static_cast(step + 1) / 10.0; for (int j = 0; j < nblocks[step]; j++) { - EXPECT_LE( - fabs(data[(i * nblocks[step] + j) * N] - value), - epsilon); + EXPECT_LE(fabs(data[(i * nblocks[step] + j) * N] - value), epsilon); value += 0.01; } } @@ -196,8 +187,7 @@ TEST_P(BPChangingShapeWithinStep, MultiBlock) { inIO.SetEngine(engineName); } - adios2::Engine reader = - inIO.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine reader = inIO.Open(fname, adios2::Mode::ReadRandomAccess); if (!rank) { @@ -211,15 +201,14 @@ TEST_P(BPChangingShapeWithinStep, MultiBlock) var.SetStepSelection({step, 1}); if (!rank) { - std::cout << "Step " << step << " shape (" << var.Shape()[0] - << ", " << var.Shape()[1] << ")" << std::endl; + std::cout << "Step " << step << " shape (" << var.Shape()[0] << ", " + << var.Shape()[1] << ")" << std::endl; } size_t expected_shape = N * nblocks[step]; EXPECT_EQ(var.Shape()[0], nproc); EXPECT_EQ(var.Shape()[1], expected_shape); - var.SetSelection( - {{0, 0}, {static_cast(nproc), expected_shape}}); + var.SetSelection({{0, 0}, {static_cast(nproc), expected_shape}}); std::vector data(nproc * expected_shape); reader.Get(var, data.data()); @@ -227,13 +216,11 @@ TEST_P(BPChangingShapeWithinStep, MultiBlock) for (int i = 0; i < nproc; i++) { - double value = static_cast(i) + - static_cast(step + 1) / 10.0; + double value = static_cast(i) + static_cast(step + 1) / 10.0; for (int j = 0; j < nblocks[step]; j++) { - EXPECT_LE(fabs(data[(i * nblocks[step] + j) * N] - value), - epsilon); + EXPECT_LE(fabs(data[(i * nblocks[step] + j) * N] - value), epsilon); value += 0.01; } } @@ -264,8 +251,7 @@ std::vector p = {{"none", paccuracy, 0.0} }; -INSTANTIATE_TEST_SUITE_P(Multiblock, BPChangingShapeWithinStep, - ::testing::ValuesIn(p)); +INSTANTIATE_TEST_SUITE_P(Multiblock, BPChangingShapeWithinStep, ::testing::ValuesIn(p)); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/bp/TestBPFStreamWriteReadHighLevelAPI.cpp b/testing/adios2/engine/bp/TestBPFStreamWriteReadHighLevelAPI.cpp index 5bef8c9489..f3c3e2b6b2 100644 --- a/testing/adios2/engine/bp/TestBPFStreamWriteReadHighLevelAPI.cpp +++ b/testing/adios2/engine/bp/TestBPFStreamWriteReadHighLevelAPI.cpp @@ -50,8 +50,7 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPWriteRead1D8) { #if ADIOS2_USE_MPI - adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, - engineName); + adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, engineName); #else adios2::fstream oStream(fname, adios2::fstream::out, engineName); @@ -64,8 +63,8 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPWriteRead1D8) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData stepData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData stepData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); if (step == 0) { @@ -93,18 +92,15 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPWriteRead1D8) oStream.write_attribute("attrr32", m_TestData.R32.front()); oStream.write_attribute("attrr64", m_TestData.R64.front()); - oStream.write_attribute("attrStrarray", m_TestData.S3.data(), - m_TestData.S3.size()); - oStream.write_attribute("attri8array", m_TestData.I8.data(), - m_TestData.I8.size()); + oStream.write_attribute("attrStrarray", m_TestData.S3.data(), m_TestData.S3.size()); + oStream.write_attribute("attri8array", m_TestData.I8.data(), m_TestData.I8.size()); oStream.write_attribute("attri16array", m_TestData.I16.data(), m_TestData.I16.size()); oStream.write_attribute("attri32array", m_TestData.I32.data(), m_TestData.I32.size()); oStream.write_attribute("attri64array", m_TestData.I64.data(), m_TestData.I64.size()); - oStream.write_attribute("attru8array", m_TestData.U8.data(), - m_TestData.U8.size()); + oStream.write_attribute("attru8array", m_TestData.U8.data(), m_TestData.U8.size()); oStream.write_attribute("attru16array", m_TestData.U16.data(), m_TestData.U16.size()); oStream.write_attribute("attru32array", m_TestData.U32.data(), @@ -131,39 +127,30 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPWriteRead1D8) if (step == 0) { - oStream.write_attribute("attrStr", m_TestData.S1, - "iString"); + oStream.write_attribute("attrStr", m_TestData.S1, "iString"); oStream.write_attribute("attri8", m_TestData.I8.front(), "i8"); - oStream.write_attribute("attri16", m_TestData.I16.front(), - "i16"); - oStream.write_attribute("attri32", m_TestData.I32.front(), - "i32"); - oStream.write_attribute("attri64", m_TestData.I64.front(), - "i64"); + oStream.write_attribute("attri16", m_TestData.I16.front(), "i16"); + oStream.write_attribute("attri32", m_TestData.I32.front(), "i32"); + oStream.write_attribute("attri64", m_TestData.I64.front(), "i64"); oStream.write_attribute("attru8", m_TestData.U8.front(), "u8"); - oStream.write_attribute("attru16", m_TestData.U16.front(), - "u16"); - oStream.write_attribute("attru32", m_TestData.U32.front(), - "u32"); - oStream.write_attribute("attru64", m_TestData.U64.front(), - "u64"); - oStream.write_attribute("attrr32", m_TestData.R32.front(), - "r32"); - oStream.write_attribute("attrr64", m_TestData.R64.front(), - "r64"); - - oStream.write_attribute("attrStrarray", m_TestData.S3.data(), - m_TestData.S3.size(), "iString", "::"); - oStream.write_attribute("attri8array", m_TestData.I8.data(), - m_TestData.I8.size(), "i8", "::"); + oStream.write_attribute("attru16", m_TestData.U16.front(), "u16"); + oStream.write_attribute("attru32", m_TestData.U32.front(), "u32"); + oStream.write_attribute("attru64", m_TestData.U64.front(), "u64"); + oStream.write_attribute("attrr32", m_TestData.R32.front(), "r32"); + oStream.write_attribute("attrr64", m_TestData.R64.front(), "r64"); + + oStream.write_attribute("attrStrarray", m_TestData.S3.data(), m_TestData.S3.size(), + "iString", "::"); + oStream.write_attribute("attri8array", m_TestData.I8.data(), m_TestData.I8.size(), + "i8", "::"); oStream.write_attribute("attri16array", m_TestData.I16.data(), m_TestData.I16.size(), "i16", "::"); oStream.write_attribute("attri32array", m_TestData.I32.data(), m_TestData.I32.size(), "i32", "::"); oStream.write_attribute("attri64array", m_TestData.I64.data(), m_TestData.I64.size(), "i64", "::"); - oStream.write_attribute("attru8array", m_TestData.U8.data(), - m_TestData.U8.size(), "u8", "::"); + oStream.write_attribute("attru8array", m_TestData.U8.data(), m_TestData.U8.size(), + "u8", "::"); oStream.write_attribute("attru16array", m_TestData.U16.data(), m_TestData.U16.size(), "u16", "::"); oStream.write_attribute("attru32array", m_TestData.U32.data(), @@ -282,27 +269,17 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPWriteRead1D8) EXPECT_EQ(vattrr32.front(), m_TestData.R32.front()); EXPECT_EQ(vattrr64.front(), m_TestData.R64.front()); - auto vattrStrarray = - iStep.read_attribute("attrStrarray"); + auto vattrStrarray = iStep.read_attribute("attrStrarray"); auto vattri8array = iStep.read_attribute("attri8array"); - auto vattri16array = - iStep.read_attribute("attri16array"); - auto vattri32array = - iStep.read_attribute("attri32array"); - auto vattri64array = - iStep.read_attribute("attri64array"); - auto vattru8array = - iStep.read_attribute("attru8array"); - auto vattru16array = - iStep.read_attribute("attru16array"); - auto vattru32array = - iStep.read_attribute("attru32array"); - auto vattru64array = - iStep.read_attribute("attru64array"); - auto vattrr32array = - iStep.read_attribute("attrr32array"); - auto vattrr64array = - iStep.read_attribute("attrr64array"); + auto vattri16array = iStep.read_attribute("attri16array"); + auto vattri32array = iStep.read_attribute("attri32array"); + auto vattri64array = iStep.read_attribute("attri64array"); + auto vattru8array = iStep.read_attribute("attru8array"); + auto vattru16array = iStep.read_attribute("attru16array"); + auto vattru32array = iStep.read_attribute("attru32array"); + auto vattru64array = iStep.read_attribute("attru64array"); + auto vattrr32array = iStep.read_attribute("attrr32array"); + auto vattrr64array = iStep.read_attribute("attrr64array"); for (size_t i = 0; i < vattrStrarray.size(); ++i) { @@ -324,26 +301,17 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPWriteRead1D8) } // var attributes - auto vvarattrStr = - iStep.read_attribute("attrStr", "iString"); + auto vvarattrStr = iStep.read_attribute("attrStr", "iString"); auto vvarattri8 = iStep.read_attribute("attri8", "i8"); - auto vvarattri16 = - iStep.read_attribute("attri16", "i16"); - auto vvarattri32 = - iStep.read_attribute("attri32", "i32"); - auto vvarattri64 = - iStep.read_attribute("attri64", "i64"); + auto vvarattri16 = iStep.read_attribute("attri16", "i16"); + auto vvarattri32 = iStep.read_attribute("attri32", "i32"); + auto vvarattri64 = iStep.read_attribute("attri64", "i64"); auto vvarattru8 = iStep.read_attribute("attru8", "u8"); - auto vvarattru16 = - iStep.read_attribute("attru16", "u16"); - auto vvarattru32 = - iStep.read_attribute("attru32", "u32"); - auto vvarattru64 = - iStep.read_attribute("attru64", "u64"); - auto vvarattrr32 = - iStep.read_attribute("attrr32", "r32"); - auto vvarattrr64 = - iStep.read_attribute("attrr64", "r64"); + auto vvarattru16 = iStep.read_attribute("attru16", "u16"); + auto vvarattru32 = iStep.read_attribute("attru32", "u32"); + auto vvarattru64 = iStep.read_attribute("attru64", "u64"); + auto vvarattrr32 = iStep.read_attribute("attrr32", "r32"); + auto vvarattrr64 = iStep.read_attribute("attrr64", "r64"); EXPECT_EQ(vvarattrStr.front(), m_TestData.S1); EXPECT_EQ(vvarattri8.front(), m_TestData.I8.front()); @@ -357,28 +325,18 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPWriteRead1D8) EXPECT_EQ(vvarattrr32.front(), m_TestData.R32.front()); EXPECT_EQ(vvarattrr64.front(), m_TestData.R64.front()); - auto vvarattrStrarray = iStep.read_attribute( - "attrStrarray", "iString", "::"); - auto vvarattri8array = - iStep.read_attribute("attri8array", "i8", "::"); - auto vvarattri16array = - iStep.read_attribute("attri16array", "i16", "::"); - auto vvarattri32array = - iStep.read_attribute("attri32array", "i32", "::"); - auto vvarattri64array = - iStep.read_attribute("attri64array", "i64", "::"); - auto vvarattru8array = - iStep.read_attribute("attru8array", "u8", "::"); - auto vvarattru16array = - iStep.read_attribute("attru16array", "u16", "::"); - auto vvarattru32array = - iStep.read_attribute("attru32array", "u32", "::"); - auto vvarattru64array = - iStep.read_attribute("attru64array", "u64", "::"); - auto vvarattrr32array = - iStep.read_attribute("attrr32array", "r32", "::"); - auto vvarattrr64array = - iStep.read_attribute("attrr64array", "r64", "::"); + auto vvarattrStrarray = + iStep.read_attribute("attrStrarray", "iString", "::"); + auto vvarattri8array = iStep.read_attribute("attri8array", "i8", "::"); + auto vvarattri16array = iStep.read_attribute("attri16array", "i16", "::"); + auto vvarattri32array = iStep.read_attribute("attri32array", "i32", "::"); + auto vvarattri64array = iStep.read_attribute("attri64array", "i64", "::"); + auto vvarattru8array = iStep.read_attribute("attru8array", "u8", "::"); + auto vvarattru16array = iStep.read_attribute("attru16array", "u16", "::"); + auto vvarattru32array = iStep.read_attribute("attru32array", "u32", "::"); + auto vvarattru64array = iStep.read_attribute("attru64array", "u64", "::"); + auto vvarattrr32array = iStep.read_attribute("attrr32array", "r32", "::"); + auto vvarattrr64array = iStep.read_attribute("attrr64array", "r64", "::"); for (size_t i = 0; i < vvarattrStrarray.size(); ++i) { @@ -418,8 +376,8 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPWriteRead1D8) auto R32 = iStep.read("r32", start, count); auto R64 = iStep.read("r64", start, count); - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString.front(), currentTestData.S1); @@ -477,8 +435,7 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPwriteRead2D2x4) { #if ADIOS2_USE_MPI - adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, - engineName); + adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, engineName); #else adios2::fstream oStream(fname, adios2::fstream::out, engineName); @@ -491,8 +448,8 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPwriteRead2D2x4) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData stepData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData stepData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); oStream.write("iString", stepData.S1); oStream.write("i8", stepData.I8.data(), shape, start, count); @@ -504,8 +461,7 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPwriteRead2D2x4) oStream.write("u32", stepData.U32.data(), shape, start, count); oStream.write("u64", stepData.U64.data(), shape, start, count); oStream.write("r32", stepData.R32.data(), shape, start, count); - oStream.write("r64", stepData.R64.data(), shape, start, count, - adios2::end_step); + oStream.write("r64", stepData.R64.data(), shape, start, count, adios2::end_step); } // Close the file @@ -515,8 +471,7 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPwriteRead2D2x4) // READ { #if ADIOS2_USE_MPI - adios2::fstream iStream(fname, adios2::fstream::in, MPI_COMM_WORLD, - engineName); + adios2::fstream iStream(fname, adios2::fstream::in, MPI_COMM_WORLD, engineName); #else adios2::fstream iStream(fname, adios2::fstream::in, engineName); #endif @@ -543,8 +498,8 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPwriteRead2D2x4) auto R64 = iStep.read("r64", start, count); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString.front(), currentTestData.S1); @@ -599,8 +554,7 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPwriteRead2D4x2) { #if ADIOS2_USE_MPI - adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, - engineName); + adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, engineName); #else adios2::fstream oStream(fname, adios2::fstream::out, engineName); @@ -617,8 +571,8 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPwriteRead2D4x2) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData stepData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData stepData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); oStream.write("iString", stepData.S1); oStream.write("i8", stepData.I8.data(), shape, start, count); @@ -630,8 +584,7 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPwriteRead2D4x2) oStream.write("u32", stepData.U32.data(), shape, start, count); oStream.write("u64", stepData.U64.data(), shape, start, count); oStream.write("r32", stepData.R32.data(), shape, start, count); - oStream.write("r64", stepData.R64.data(), shape, start, count, - adios2::end_step); + oStream.write("r64", stepData.R64.data(), shape, start, count, adios2::end_step); } EXPECT_THROW(oStream.write("i8", 1), std::invalid_argument); @@ -640,8 +593,7 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPwriteRead2D4x2) { #if ADIOS2_USE_MPI - adios2::fstream iStream(fname, adios2::fstream::in, MPI_COMM_WORLD, - engineName); + adios2::fstream iStream(fname, adios2::fstream::in, MPI_COMM_WORLD, engineName); #else adios2::fstream iStream(fname, adios2::fstream::in, engineName); #endif @@ -668,8 +620,8 @@ TEST_F(StreamWriteReadHighLevelAPI, ADIOS2BPwriteRead2D4x2) auto R64 = iStep.read("r64", start, count); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString.front(), currentTestData.S1); @@ -705,10 +657,8 @@ TEST_F(StreamWriteReadHighLevelAPI, DoubleOpenException) { #if ADIOS2_USE_MPI - adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, - engineName); - EXPECT_THROW(oStream.open("second", adios2::fstream::out, - MPI_COMM_WORLD, engineName), + adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, engineName); + EXPECT_THROW(oStream.open("second", adios2::fstream::out, MPI_COMM_WORLD, engineName), std::invalid_argument); #else diff --git a/testing/adios2/engine/bp/TestBPFortranToCppReader.cpp b/testing/adios2/engine/bp/TestBPFortranToCppReader.cpp index a4b48d0424..ec81cd9e0b 100644 --- a/testing/adios2/engine/bp/TestBPFortranToCppReader.cpp +++ b/testing/adios2/engine/bp/TestBPFortranToCppReader.cpp @@ -85,8 +85,7 @@ TEST_F(BPFortranToCppRead, ADIOS2BPFortranToCppRead) EXPECT_EQ(a.size(), static_cast(inx)); for (int i = 0; i < inx; ++i) { - EXPECT_DOUBLE_EQ(a[i], - (mpiRank + 1) * 1000 + (step + 1) * 100 + (i + 1)); + EXPECT_DOUBLE_EQ(a[i], (mpiRank + 1) * 1000 + (step + 1) * 100 + (i + 1)); } // 2D local array @@ -100,18 +99,14 @@ TEST_F(BPFortranToCppRead, ADIOS2BPFortranToCppRead) EXPECT_EQ(a.size(), static_cast(inx * 2)); for (int i = 0; i < inx; ++i) { - EXPECT_DOUBLE_EQ(a[i], - (mpiRank + 1) * 1000 + (step + 1) * 100 + (i + 1)); - EXPECT_DOUBLE_EQ(a[i + inx], (mpiRank + 1) * 1000 + - (step + 1) * 100 + (inx + i + 1)); + EXPECT_DOUBLE_EQ(a[i], (mpiRank + 1) * 1000 + (step + 1) * 100 + (i + 1)); + EXPECT_DOUBLE_EQ(a[i + inx], (mpiRank + 1) * 1000 + (step + 1) * 100 + (inx + i + 1)); } // 1D changing local array - auto var_localarray_1D_changing = - io.InquireVariable("localarray_1D_changing"); + auto var_localarray_1D_changing = io.InquireVariable("localarray_1D_changing"); EXPECT_TRUE(var_localarray_1D_changing); - EXPECT_EQ(var_localarray_1D_changing.ShapeID(), - adios2::ShapeID::LocalArray); + EXPECT_EQ(var_localarray_1D_changing.ShapeID(), adios2::ShapeID::LocalArray); EXPECT_EQ(var_localarray_1D_changing.Shape().size(), 0); var_localarray_1D_changing.SetBlockSelection(mpiRank); a.clear(); @@ -119,8 +114,7 @@ TEST_F(BPFortranToCppRead, ADIOS2BPFortranToCppRead) EXPECT_EQ(a.size(), static_cast(step + 1)); for (int i = 0; i < step + 1; ++i) { - EXPECT_DOUBLE_EQ(a[i], (mpiRank + 1) * 1000 + (step + 1) * 100 + - (i + 1) + (step + 1)); + EXPECT_DOUBLE_EQ(a[i], (mpiRank + 1) * 1000 + (step + 1) * 100 + (i + 1) + (step + 1)); } bpReader.EndStep(); diff --git a/testing/adios2/engine/bp/TestBPInquireDefine.cpp b/testing/adios2/engine/bp/TestBPInquireDefine.cpp index 34205c9f1d..05c827ef47 100644 --- a/testing/adios2/engine/bp/TestBPInquireDefine.cpp +++ b/testing/adios2/engine/bp/TestBPInquireDefine.cpp @@ -57,21 +57,19 @@ TEST_F(ADIOSInquireDefineTest, Read) adios2::Dims start{static_cast(mpiRank * Nx)}; adios2::Dims count{static_cast(Nx)}; - auto var_g = ioWrite.DefineVariable("global_variable", - shape, start, count); + auto var_g = ioWrite.DefineVariable("global_variable", shape, start, count); for (auto step = 0; step < NSteps; ++step) { engine.BeginStep(); if (step == 0) { engine.Put(var_g, Ints0.data()); - auto var0 = ioWrite.DefineVariable( - "variable0", shape, start, count); + auto var0 = ioWrite.DefineVariable("variable0", shape, start, count); engine.Put(var0, Ints0.data(), adios2::Mode::Deferred); if (!ioWrite.InquireVariable("variable0")) { - auto var0 = ioWrite.DefineVariable( - "variable0", shape, start, count); + auto var0 = + ioWrite.DefineVariable("variable0", shape, start, count); engine.Put(var0, Ints1.data(), adios2::Mode::Deferred); } } @@ -80,8 +78,8 @@ TEST_F(ADIOSInquireDefineTest, Read) engine.Put(var_g, Ints1.data()); if (!ioWrite.InquireVariable("variable1")) { - auto var1 = ioWrite.DefineVariable( - "variable1", shape, start, count); + auto var1 = + ioWrite.DefineVariable("variable1", shape, start, count); engine.Put(var1, Ints1.data(), adios2::Mode::Deferred); } } @@ -90,8 +88,8 @@ TEST_F(ADIOSInquireDefineTest, Read) engine.Put(var_g, Ints2.data()); if (!ioWrite.InquireVariable("variable2")) { - auto var2 = ioWrite.DefineVariable( - "variable2", shape, start, count); + auto var2 = + ioWrite.DefineVariable("variable2", shape, start, count); engine.Put(var2, Ints2.data(), adios2::Mode::Deferred); } } @@ -100,8 +98,8 @@ TEST_F(ADIOSInquireDefineTest, Read) engine.Put(var_g, Ints3.data()); if (!ioWrite.InquireVariable("variable3")) { - auto var3 = ioWrite.DefineVariable( - "variable3", shape, start, count); + auto var3 = + ioWrite.DefineVariable("variable3", shape, start, count); engine.Put(var3, Ints3.data(), adios2::Mode::Deferred); } } diff --git a/testing/adios2/engine/bp/TestBPInquireVariableException.cpp b/testing/adios2/engine/bp/TestBPInquireVariableException.cpp index 052230fa14..c0d251f651 100644 --- a/testing/adios2/engine/bp/TestBPInquireVariableException.cpp +++ b/testing/adios2/engine/bp/TestBPInquireVariableException.cpp @@ -47,8 +47,7 @@ TEST_F(ADIOSInquireVariableException, Read) const adios2::Dims start = {rank * Nx}; const adios2::Dims count = {Nx}; - auto var1 = - io_w.DefineVariable("variable1", shape, start, count); + auto var1 = io_w.DefineVariable("variable1", shape, start, count); for (size_t step = 0; step < NSteps; ++step) { diff --git a/testing/adios2/engine/bp/TestBPJoinedArray.cpp b/testing/adios2/engine/bp/TestBPJoinedArray.cpp index c3685120bb..d807a97da8 100644 --- a/testing/adios2/engine/bp/TestBPJoinedArray.cpp +++ b/testing/adios2/engine/bp/TestBPJoinedArray.cpp @@ -48,16 +48,14 @@ TEST_F(BPJoinedArray, MultiBlock) MPI_Comm_rank(MPI_COMM_WORLD, &rank); MPI_Comm_size(MPI_COMM_WORLD, &nproc); adios2::ADIOS adios(MPI_COMM_WORLD); - const int nblocks = (rank < static_cast(nblocksPerProcess.size()) - ? nblocksPerProcess[rank] - : 1); + const int nblocks = + (rank < static_cast(nblocksPerProcess.size()) ? nblocksPerProcess[rank] : 1); #else adios2::ADIOS adios; const int nblocks = nblocksPerProcess[0]; #endif - const std::string fname = - "BPJoinedArrayMultiblock_nproc_" + std::to_string(nproc) + ".bp"; + const std::string fname = "BPJoinedArrayMultiblock_nproc_" + std::to_string(nproc) + ".bp"; int nMyTotalRows[nsteps]; int nTotalRows[nsteps]; @@ -71,8 +69,8 @@ TEST_F(BPJoinedArray, MultiBlock) } adios2::Engine writer = outIO.Open(fname, adios2::Mode::Write); - auto var = outIO.DefineVariable( - "table", {adios2::JoinedDim, Ncols}, {}, {1, Ncols}); + auto var = + outIO.DefineVariable("table", {adios2::JoinedDim, Ncols}, {}, {1, Ncols}); if (!rank) { @@ -94,14 +92,14 @@ TEST_F(BPJoinedArray, MultiBlock) nTotalRows[step] = nMyTotalRows[step]; #if ADIOS2_USE_MPI - MPI_Allreduce(&(nMyTotalRows[step]), &(nTotalRows[step]), 1, - MPI_INT, MPI_SUM, MPI_COMM_WORLD); + MPI_Allreduce(&(nMyTotalRows[step]), &(nTotalRows[step]), 1, MPI_INT, MPI_SUM, + MPI_COMM_WORLD); #endif if (!rank) { - std::cout << "Writing " << nTotalRows[step] << " rows in step " - << step << std::endl; + std::cout << "Writing " << nTotalRows[step] << " rows in step " << step + << std::endl; } writer.BeginStep(); @@ -112,17 +110,16 @@ TEST_F(BPJoinedArray, MultiBlock) { for (size_t col = 0; col < Ncols; col++) { - mytable[row * Ncols + col] = static_cast( - (step + 1) * 1.0 + rank * 0.1 + block * 0.01 + - row * 0.001 + col * 0.0001); + mytable[row * Ncols + col] = + static_cast((step + 1) * 1.0 + rank * 0.1 + block * 0.01 + + row * 0.001 + col * 0.0001); } } var.SetSelection({{}, {Nrows[block], Ncols}}); - std::cout << "Step " << step << " rank " << rank << " block " - << block << " count (" << var.Count()[0] << ", " - << var.Count()[1] << ")" << std::endl; + std::cout << "Step " << step << " rank " << rank << " block " << block << " count (" + << var.Count()[0] << ", " << var.Count()[1] << ")" << std::endl; writer.Put(var, mytable.data(), adios2::Mode::Sync); } @@ -143,15 +140,13 @@ TEST_F(BPJoinedArray, MultiBlock) if (!rank) { - std::cout << "Reading as stream with BeginStep/EndStep:" - << std::endl; + std::cout << "Reading as stream with BeginStep/EndStep:" << std::endl; } int step = 0; while (true) { - adios2::StepStatus status = - reader.BeginStep(adios2::StepMode::Read); + adios2::StepStatus status = reader.BeginStep(adios2::StepMode::Read); if (status != adios2::StepStatus::OK) { @@ -163,9 +158,8 @@ TEST_F(BPJoinedArray, MultiBlock) if (!rank) { - std::cout << "Step " << step << " table shape (" - << var.Shape()[0] << ", " << var.Shape()[1] << ")" - << std::endl; + std::cout << "Step " << step << " table shape (" << var.Shape()[0] << ", " + << var.Shape()[1] << ")" << std::endl; } size_t Nrows = static_cast(nTotalRows[step]); @@ -185,8 +179,7 @@ TEST_F(BPJoinedArray, MultiBlock) for (size_t j = 0; j < Ncols; ++j) { EXPECT_GE(data[i * Ncols + j], (step + 1) * 1.0); - EXPECT_LT(data[i * Ncols + j], - (nsteps + 1) * 1.0 + 0.9999); + EXPECT_LT(data[i * Ncols + j], (nsteps + 1) * 1.0 + 0.9999); } } } diff --git a/testing/adios2/engine/bp/TestBPLargeMetadata.cpp b/testing/adios2/engine/bp/TestBPLargeMetadata.cpp index cde45964e5..e190d40c71 100644 --- a/testing/adios2/engine/bp/TestBPLargeMetadata.cpp +++ b/testing/adios2/engine/bp/TestBPLargeMetadata.cpp @@ -71,12 +71,10 @@ TEST_F(BPLargeMetadata, BPWrite1D_LargeMetadata) for (size_t i = 0; i < NVars; ++i) { - varsR32[i] = - io.DefineVariable("varR32_" + std::to_string(i), shape, - start, count, adios2::ConstantDims); - varsR64[i] = - io.DefineVariable("varR64_" + std::to_string(i), shape, - start, count, adios2::ConstantDims); + varsR32[i] = io.DefineVariable("varR32_" + std::to_string(i), shape, start, + count, adios2::ConstantDims); + varsR64[i] = io.DefineVariable("varR64_" + std::to_string(i), shape, start, + count, adios2::ConstantDims); } adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -84,8 +82,8 @@ TEST_F(BPLargeMetadata, BPWrite1D_LargeMetadata) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); bpWriter.BeginStep(); for (size_t i = 0; i < NVars; ++i) diff --git a/testing/adios2/engine/bp/TestBPParameterSelectSteps.cpp b/testing/adios2/engine/bp/TestBPParameterSelectSteps.cpp index c77572d4dd..42c020abaf 100644 --- a/testing/adios2/engine/bp/TestBPParameterSelectSteps.cpp +++ b/testing/adios2/engine/bp/TestBPParameterSelectSteps.cpp @@ -77,8 +77,7 @@ class BPParameterSelectSteps : public ::testing::Test #else adios2::ADIOS adios; #endif - std::string filename = - "ParameterSelectSteps" + std::to_string(mpiSize) + ".bp"; + std::string filename = "ParameterSelectSteps" + std::to_string(mpiSize) + ".bp"; adios2::IO ioWrite = adios.DeclareIO("TestIOWrite"); ioWrite.SetEngine(engineName); adios2::Engine engine = ioWrite.Open(filename, adios2::Mode::Write); @@ -108,8 +107,7 @@ class BPParameterSelectSteps : public ::testing::Test class BPParameterSelectStepsP : public BPParameterSelectSteps, - public ::testing::WithParamInterface< - std::tuple>> + public ::testing::WithParamInterface>> { protected: std::string GetSelectionString() { return std::get<0>(GetParam()); }; @@ -135,13 +133,11 @@ TEST_P(BPParameterSelectStepsP, Read) adios2::ADIOS adios; #endif CreateOutput(); - std::string filename = - "ParameterSelectSteps" + std::to_string(mpiSize) + ".bp"; + std::string filename = "ParameterSelectSteps" + std::to_string(mpiSize) + ".bp"; adios2::IO ioRead = adios.DeclareIO("TestIORead"); ioRead.SetEngine(engineName); ioRead.SetParameter("SelectSteps", selection); - adios2::Engine engine_s = - ioRead.Open(filename, adios2::Mode::ReadRandomAccess); + adios2::Engine engine_s = ioRead.Open(filename, adios2::Mode::ReadRandomAccess); EXPECT_TRUE(engine_s); const size_t nsteps = engine_s.Steps(); @@ -196,8 +192,7 @@ TEST_P(BPParameterSelectStepsP, Stream) adios2::ADIOS adios; #endif - std::string filename = - "ParameterSelectStepsStream" + std::to_string(mpiSize) + ".bp"; + std::string filename = "ParameterSelectStepsStream" + std::to_string(mpiSize) + ".bp"; adios2::IO ioWrite = adios.DeclareIO("TestIOWrite"); ioWrite.SetEngine(engineName); adios2::Engine writer = ioWrite.Open(filename, adios2::Mode::Write); @@ -236,8 +231,7 @@ TEST_P(BPParameterSelectStepsP, Stream) auto status = reader.BeginStep(adios2::StepMode::Read, 0.0f); if (!mpiRank) { - std::cout << "Reader BeginStep() step " << step << " status " - << status << std::endl; + std::cout << "Reader BeginStep() step " << step << " status " << status << std::endl; } if (status == adios2::StepStatus::OK) { @@ -245,27 +239,24 @@ TEST_P(BPParameterSelectStepsP, Stream) if (!mpiRank) { std::cout << "Reader got read step " << readStep - << ". Check if it equals to writer step " - << absoluteSteps[readStep] << std::endl; + << ". Check if it equals to writer step " << absoluteSteps[readStep] + << std::endl; } std::vector res; - adios2::Variable var = - ioRead.InquireVariable("var"); + adios2::Variable var = ioRead.InquireVariable("var"); var.SetSelection({{Nx * mpiRank}, {Nx}}); reader.Get(var, res, adios2::Mode::Sync); int s = static_cast(absoluteSteps[readStep]); auto d = GenerateData(s, mpiRank, mpiSize); EXPECT_EQ(res[0], d[0]); - adios2::Variable varStep = - ioRead.InquireVariable("step"); + adios2::Variable varStep = ioRead.InquireVariable("step"); size_t stepInFile; reader.Get(varStep, stepInFile); EXPECT_EQ(stepInFile, absoluteSteps[readStep]); std::string aname = "a" + std::to_string(absoluteSteps[readStep]); - adios2::Attribute a = - ioRead.InquireAttribute(aname); + adios2::Attribute a = ioRead.InquireAttribute(aname); size_t stepInAttribute = a.Data()[0]; EXPECT_EQ(stepInAttribute, absoluteSteps[readStep]); @@ -294,8 +285,7 @@ INSTANTIATE_TEST_SUITE_P(BPParameterSelectSteps, BPParameterSelectStepsP, ::testing::Values(std::make_tuple("0:n:1", s_0n1), std::make_tuple("1:5:2", s_152), std::make_tuple("3:n:3", s_3n3), - std::make_tuple("1:n:2 0:n:2", - s_1n2_0n2))); + std::make_tuple("1:n:2 0:n:2", s_1n2_0n2))); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/bp/TestBPReadMultithreaded.cpp b/testing/adios2/engine/bp/TestBPReadMultithreaded.cpp index 92c900d550..00c5c2e8f4 100644 --- a/testing/adios2/engine/bp/TestBPReadMultithreaded.cpp +++ b/testing/adios2/engine/bp/TestBPReadMultithreaded.cpp @@ -77,8 +77,7 @@ class BPReadMultithreadedTest : public ::testing::Test #else adios2::ADIOS adios; #endif - std::string filename = - "BPReadMultithreaded" + std::to_string(mpiSize) + ".bp"; + std::string filename = "BPReadMultithreaded" + std::to_string(mpiSize) + ".bp"; adios2::IO ioWrite = adios.DeclareIO("TestIOWrite"); ioWrite.SetEngine(engineName); adios2::Engine engine = ioWrite.Open(filename, adios2::Mode::Write); @@ -119,8 +118,8 @@ TEST_P(BPReadMultithreadedTestP, ReadFile) { int mpiRank = 0, mpiSize = 1; int nThreads = GetThreads(); - std::cout << "---- Test Multithreaded ReadRandomAccess with " << nThreads - << " threads ----" << std::endl; + std::cout << "---- Test Multithreaded ReadRandomAccess with " << nThreads << " threads ----" + << std::endl; #if ADIOS2_USE_MPI MPI_Comm_rank(MPI_COMM_WORLD, &mpiRank); @@ -133,13 +132,11 @@ TEST_P(BPReadMultithreadedTestP, ReadFile) adios2::ADIOS adios; #endif CreateOutput(); - std::string filename = - "BPReadMultithreaded" + std::to_string(mpiSize) + ".bp"; + std::string filename = "BPReadMultithreaded" + std::to_string(mpiSize) + ".bp"; adios2::IO ioRead = adios.DeclareIO("TestIORead"); ioRead.SetEngine(engineName); ioRead.SetParameter("Threads", std::to_string(nThreads)); - adios2::Engine reader = - ioRead.Open(filename, adios2::Mode::ReadRandomAccess); + adios2::Engine reader = ioRead.Open(filename, adios2::Mode::ReadRandomAccess); EXPECT_TRUE(reader); const size_t nsteps = reader.Steps(); @@ -189,8 +186,8 @@ TEST_P(BPReadMultithreadedTestP, ReadStream) { int mpiRank = 0, mpiSize = 1; int nThreads = GetThreads(); - std::cout << "---- Test Multithreaded stream Read with " << nThreads - << " threads ----" << std::endl; + std::cout << "---- Test Multithreaded stream Read with " << nThreads << " threads ----" + << std::endl; #if ADIOS2_USE_MPI MPI_Comm_rank(MPI_COMM_WORLD, &mpiRank); @@ -203,8 +200,7 @@ TEST_P(BPReadMultithreadedTestP, ReadStream) adios2::ADIOS adios; #endif CreateOutput(); - std::string filename = - "BPReadMultithreaded" + std::to_string(mpiSize) + ".bp"; + std::string filename = "BPReadMultithreaded" + std::to_string(mpiSize) + ".bp"; adios2::IO ioRead = adios.DeclareIO("TestIORead"); ioRead.SetEngine(engineName); ioRead.SetParameter("Threads", std::to_string(nThreads)); diff --git a/testing/adios2/engine/bp/TestBPSelectionsCuda.cpp b/testing/adios2/engine/bp/TestBPSelectionsCuda.cpp index 2b178d71ea..53d5812f8e 100644 --- a/testing/adios2/engine/bp/TestBPSelectionsCuda.cpp +++ b/testing/adios2/engine/bp/TestBPSelectionsCuda.cpp @@ -26,9 +26,8 @@ class ADIOSSelectionCUDATest : public ::testing::Test ADIOSSelectionCUDATest() = default; }; -void copySelection2D(const double *a, const adios2::Dims &shape, - const adios2::Dims &start, const adios2::Dims &count, - double *b) +void copySelection2D(const double *a, const adios2::Dims &shape, const adios2::Dims &start, + const adios2::Dims &count, double *b) { double *bp = b; for (size_t x = 0; x < count[0]; ++x) @@ -42,13 +41,12 @@ void copySelection2D(const double *a, const adios2::Dims &shape, } } -bool compareSelection2D(const double *a, const adios2::Dims &shape, - const adios2::Dims &start, const adios2::Dims &count, - double *b, adios2::Dims &firstNonEqPoint) +bool compareSelection2D(const double *a, const adios2::Dims &shape, const adios2::Dims &start, + const adios2::Dims &count, double *b, adios2::Dims &firstNonEqPoint) { std::cout << " compare Block: shape = " << adios2::ToString(shape) - << " start = " << adios2::ToString(start) - << " count = " << adios2::ToString(count) << std::endl; + << " start = " << adios2::ToString(start) << " count = " << adios2::ToString(count) + << std::endl; bool match = true; double *bp = b; for (size_t x = 0; x < count[0]; ++x) @@ -59,10 +57,8 @@ bool compareSelection2D(const double *a, const adios2::Dims &shape, if (*bp != a[aidx]) { firstNonEqPoint = {x, y}; - std::cout << " Non-match at pos = " - << adios2::ToString(firstNonEqPoint) - << " : a = " << a[aidx] << ", b = " << *bp - << std::endl; + std::cout << " Non-match at pos = " << adios2::ToString(firstNonEqPoint) + << " : a = " << a[aidx] << ", b = " << *bp << std::endl; match = false; } ++bp; @@ -72,13 +68,12 @@ bool compareSelection2D(const double *a, const adios2::Dims &shape, return match; } -bool compareSelection2D_F(const double *a, const adios2::Dims &shape, - const adios2::Dims &start, const adios2::Dims &count, - double *b, adios2::Dims &firstNonEqPoint) +bool compareSelection2D_F(const double *a, const adios2::Dims &shape, const adios2::Dims &start, + const adios2::Dims &count, double *b, adios2::Dims &firstNonEqPoint) { std::cout << " compare Block: shape = " << adios2::ToString(shape) - << " start = " << adios2::ToString(start) - << " count = " << adios2::ToString(count) << std::endl; + << " start = " << adios2::ToString(start) << " count = " << adios2::ToString(count) + << std::endl; bool match = true; double *bp = b; for (size_t y = 0; y < count[1]; ++y) @@ -89,10 +84,8 @@ bool compareSelection2D_F(const double *a, const adios2::Dims &shape, if (*bp != a[aidx]) { firstNonEqPoint = {y, x}; - std::cout << " Non-match at pos = " - << adios2::ToString(firstNonEqPoint) - << " : a = " << a[aidx] << ", b = " << *bp - << std::endl; + std::cout << " Non-match at pos = " << adios2::ToString(firstNonEqPoint) + << " : a = " << a[aidx] << ", b = " << *bp << std::endl; match = false; } ++bp; @@ -147,8 +140,7 @@ TEST_F(ADIOSSelectionCUDATest, 2D) double b[C1 * C2]; - adios2::Variable var = - ioWrite.DefineVariable("a", shape, start, count); + adios2::Variable var = ioWrite.DefineVariable("a", shape, start, count); /*adios2::Variable vara1 = ioWrite.DefineVariable("a1", shape, start, shape);*/ @@ -164,8 +156,7 @@ TEST_F(ADIOSSelectionCUDATest, 2D) start = {x, y}; copySelection2D(a, shape, start, count, b); var.SetSelection({start, count}); - cudaMemcpy(gpuSimData, b, C1 * C2 * sizeof(double), - cudaMemcpyHostToDevice); + cudaMemcpy(gpuSimData, b, C1 * C2 * sizeof(double), cudaMemcpyHostToDevice); var.SetMemorySpace(adios2::MemorySpace::GPU); engine.Put(var, gpuSimData, adios2::Mode::Sync); } @@ -201,11 +192,9 @@ TEST_F(ADIOSSelectionCUDATest, 2D) var.SetSelection({s, c}); var.SetMemorySpace(adios2::MemorySpace::GPU); engine.Get(var, gpuRet, adios2::Mode::Sync); - cudaMemcpy(res.data(), gpuRet, DIM1 * DIM2 * sizeof(double), - cudaMemcpyDeviceToHost); + cudaMemcpy(res.data(), gpuRet, DIM1 * DIM2 * sizeof(double), cudaMemcpyDeviceToHost); EXPECT_EQ(res.size(), DIM1 * DIM2); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); } /* Single block in the center */ @@ -218,11 +207,9 @@ TEST_F(ADIOSSelectionCUDATest, 2D) var.SetSelection({s, c}); var.SetMemorySpace(adios2::MemorySpace::GPU); engine.Get(var, gpuRet, adios2::Mode::Sync); - cudaMemcpy(res.data(), gpuRet, c[0] * c[1] * sizeof(double), - cudaMemcpyDeviceToHost); + cudaMemcpy(res.data(), gpuRet, c[0] * c[1] * sizeof(double), cudaMemcpyDeviceToHost); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); } /* Four blocks in X-Y direction */ @@ -235,11 +222,9 @@ TEST_F(ADIOSSelectionCUDATest, 2D) var.SetSelection({s, c}); var.SetMemorySpace(adios2::MemorySpace::GPU); engine.Get(var, gpuRet, adios2::Mode::Sync); - cudaMemcpy(res.data(), gpuRet, c[0] * c[1] * sizeof(double), - cudaMemcpyDeviceToHost); + cudaMemcpy(res.data(), gpuRet, c[0] * c[1] * sizeof(double), cudaMemcpyDeviceToHost); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); } /* @@ -258,11 +243,9 @@ TEST_F(ADIOSSelectionCUDATest, 2D) var.SetSelection({s, c}); var.SetMemorySpace(adios2::MemorySpace::GPU); engine.Get(var, gpuRet, adios2::Mode::Sync); - cudaMemcpy(res.data(), gpuRet, c[0] * c[1] * sizeof(double), - cudaMemcpyDeviceToHost); + cudaMemcpy(res.data(), gpuRet, c[0] * c[1] * sizeof(double), cudaMemcpyDeviceToHost); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); } /* Center block plus 1 in each direction, cutting into all blocks */ @@ -278,11 +261,9 @@ TEST_F(ADIOSSelectionCUDATest, 2D) var.SetSelection({s, c}); var.SetMemorySpace(adios2::MemorySpace::GPU); engine.Get(var, gpuRet, adios2::Mode::Sync); - cudaMemcpy(res.data(), gpuRet, c[0] * c[1] * sizeof(double), - cudaMemcpyDeviceToHost); + cudaMemcpy(res.data(), gpuRet, c[0] * c[1] * sizeof(double), cudaMemcpyDeviceToHost); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); } engine.EndStep(); diff --git a/testing/adios2/engine/bp/TestBPSelectionsOnColumnMajorData.cpp b/testing/adios2/engine/bp/TestBPSelectionsOnColumnMajorData.cpp index fbc799ff41..bd108a5ee5 100644 --- a/testing/adios2/engine/bp/TestBPSelectionsOnColumnMajorData.cpp +++ b/testing/adios2/engine/bp/TestBPSelectionsOnColumnMajorData.cpp @@ -23,13 +23,12 @@ class ADIOSSelectionColumnMajorTest : public ::testing::Test ADIOSSelectionColumnMajorTest() = default; }; -void copySelection2D_CM(const double *a, const adios2::Dims &shape, - const adios2::Dims &start, const adios2::Dims &count, - double *b) +void copySelection2D_CM(const double *a, const adios2::Dims &shape, const adios2::Dims &start, + const adios2::Dims &count, double *b) { std::cout << " copy Block: shape = " << adios2::ToString(shape) - << " start = " << adios2::ToString(start) - << " count = " << adios2::ToString(count) << std::endl; + << " start = " << adios2::ToString(start) << " count = " << adios2::ToString(count) + << std::endl; double *bp = b; for (size_t y = 0; y < count[1]; ++y) { @@ -78,13 +77,12 @@ void copySelection2D_CM(const double *a, const adios2::Dims &shape, return true; }*/ -bool compareSelection2D_RM(const double *a, const adios2::Dims &shape, - const adios2::Dims &start, const adios2::Dims &count, - double *b, adios2::Dims &firstNonEqPoint) +bool compareSelection2D_RM(const double *a, const adios2::Dims &shape, const adios2::Dims &start, + const adios2::Dims &count, double *b, adios2::Dims &firstNonEqPoint) { std::cout << " compare Block: shape = " << adios2::ToString(shape) - << " start = " << adios2::ToString(start) - << " count = " << adios2::ToString(count) << std::endl; + << " start = " << adios2::ToString(start) << " count = " << adios2::ToString(count) + << std::endl; bool match = true; double *bp = b; for (size_t x = 0; x < count[0]; ++x) @@ -95,10 +93,8 @@ bool compareSelection2D_RM(const double *a, const adios2::Dims &shape, if (*bp != a[aidx]) { firstNonEqPoint = {x, y}; - std::cout << " Non-match at pos = " - << adios2::ToString(firstNonEqPoint) - << " : a = " << a[aidx] << ", b = " << *bp - << std::endl; + std::cout << " Non-match at pos = " << adios2::ToString(firstNonEqPoint) + << " : a = " << a[aidx] << ", b = " << *bp << std::endl; match = false; } ++bp; @@ -108,13 +104,12 @@ bool compareSelection2D_RM(const double *a, const adios2::Dims &shape, return match; } -bool compareSelection2D_CM(const double *a, const adios2::Dims &shape, - const adios2::Dims &start, const adios2::Dims &count, - double *b, adios2::Dims &firstNonEqPoint) +bool compareSelection2D_CM(const double *a, const adios2::Dims &shape, const adios2::Dims &start, + const adios2::Dims &count, double *b, adios2::Dims &firstNonEqPoint) { std::cout << " compare Block: shape = " << adios2::ToString(shape) - << " start = " << adios2::ToString(start) - << " count = " << adios2::ToString(count) << std::endl; + << " start = " << adios2::ToString(start) << " count = " << adios2::ToString(count) + << std::endl; bool match = true; double *bp = b; for (size_t y = 0; y < count[1]; ++y) @@ -125,10 +120,8 @@ bool compareSelection2D_CM(const double *a, const adios2::Dims &shape, if (*bp != a[aidx]) { firstNonEqPoint = {y, x}; - std::cout << " Non-match at pos = " - << adios2::ToString(firstNonEqPoint) - << " : a = " << a[aidx] << ", b = " << *bp - << std::endl; + std::cout << " Non-match at pos = " << adios2::ToString(firstNonEqPoint) + << " : a = " << a[aidx] << ", b = " << *bp << std::endl; match = false; } ++bp; @@ -186,8 +179,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) double b[C1 * C2]; - adios2::Variable var = - ioWrite.DefineVariable("a", shape, start, count); + adios2::Variable var = ioWrite.DefineVariable("a", shape, start, count); // adios2::Variable vara1 = // ioWrite.DefineVariable("a1", shape, start, shape); @@ -227,8 +219,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) adios2::Dims firstNonMatch{0, 0, 0}; std::vector res; - std::cout << "Column-major read selections with entire blocks..." - << std::endl; + std::cout << "Column-major read selections with entire blocks..." << std::endl; /* Entire array */ s = {0, 0}; @@ -236,8 +227,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), DIM1 * DIM2); - EXPECT_TRUE( - compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* First block */ s = {0, 0}; @@ -245,8 +235,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* Single block in the center */ s = {5, 4}; @@ -254,8 +243,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* Two blocks in X (fast) direction */ s = {5, 4}; @@ -263,8 +251,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* Three blocks in Y (slow) direction */ s = {5, 0}; @@ -272,8 +259,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* Four blocks in X-Y direction */ s = {5, 4}; @@ -281,11 +267,9 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); - std::cout << "Column-major read selections with partial blocks..." - << std::endl; + std::cout << "Column-major read selections with partial blocks..." << std::endl; /* center part of single block in center */ s = {6, 5}; @@ -293,8 +277,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in X direction */ s = {6, 5}; @@ -302,8 +285,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in Y direction */ s = {6, 5}; @@ -311,8 +293,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into three blocks in Y direction */ s = {6, 1}; @@ -320,8 +301,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in X-Y direction */ s = {6, 1}; @@ -329,8 +309,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* Center block plus 1 in each direction, cutting into all blocks */ /* ./bin/bpls -la testing/adios2/engine/bp/bp4/ADIOSSelection2D.bp @@ -341,8 +320,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); engine.EndStep(); engine.Close(); @@ -365,15 +343,13 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) adios2::Dims firstNonMatch{0, 0}; std::vector res; - std::cout << "Row-major read selections with entire blocks..." - << std::endl; + std::cout << "Row-major read selections with entire blocks..." << std::endl; /* Entire array */ var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), DIM1 * DIM2); - EXPECT_TRUE( - compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* Single block in the center */ s = {4, 5}; @@ -381,8 +357,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* Two blocks in X direction */ s = {4, 5}; @@ -390,8 +365,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* Three blocks in Y direction */ s = {4, 0}; @@ -399,8 +373,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* Four blocks in X-Y direction */ s = {4, 5}; @@ -408,15 +381,13 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* * Partial blocks */ - std::cout << "Row-major read selections with partial blocks..." - << std::endl; + std::cout << "Row-major read selections with partial blocks..." << std::endl; /* center part of single block in center */ s = {5, 6}; @@ -424,8 +395,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in X direction */ s = {5, 6}; @@ -433,8 +403,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in Y direction */ s = {5, 6}; @@ -442,8 +411,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into three blocks in Y direction */ s = {5, 1}; @@ -451,8 +419,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in X-Y direction */ s = {1, 6}; @@ -460,8 +427,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* Center block plus 1 in each direction, cutting into all blocks */ /* ./bin/bpls -la testing/adios2/engine/bp/bp4/ADIOSSelection2D.bp @@ -472,17 +438,15 @@ TEST_F(ADIOSSelectionColumnMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_RM(a, shape, s, c, res.data(), firstNonMatch)); engine.EndStep(); engine.Close(); } } -void copySelection3D_CM(const double *a, const adios2::Dims &shape, - const adios2::Dims &start, const adios2::Dims &count, - double *b) +void copySelection3D_CM(const double *a, const adios2::Dims &shape, const adios2::Dims &start, + const adios2::Dims &count, double *b) { /*std::cout << " copy Block: shape = " << adios2::ToString(shape) << " start = " << adios2::ToString(start) @@ -492,8 +456,8 @@ void copySelection3D_CM(const double *a, const adios2::Dims &shape, { for (size_t y = 0; y < count[1]; ++y) { - size_t aidx = (start[2] + z) * shape[0] * shape[1] + - (start[1] + y) * shape[0] + start[0]; + size_t aidx = + (start[2] + z) * shape[0] * shape[1] + (start[1] + y) * shape[0] + start[0]; for (size_t x = 0; x < count[0]; ++x) { *bp = a[aidx]; @@ -504,29 +468,26 @@ void copySelection3D_CM(const double *a, const adios2::Dims &shape, } } -bool compareSelection3D_RM(const double *a, const adios2::Dims &shape, - const adios2::Dims &start, const adios2::Dims &count, - double *b, adios2::Dims &firstNonEqPoint) +bool compareSelection3D_RM(const double *a, const adios2::Dims &shape, const adios2::Dims &start, + const adios2::Dims &count, double *b, adios2::Dims &firstNonEqPoint) { std::cout << " compare Block: shape = " << adios2::ToString(shape) - << " start = " << adios2::ToString(start) - << " count = " << adios2::ToString(count) << std::endl; + << " start = " << adios2::ToString(start) << " count = " << adios2::ToString(count) + << std::endl; double *bp = b; for (size_t x = 0; x < count[0]; ++x) { for (size_t y = 0; y < count[1]; ++y) { - size_t aidx = (start[0] + x) * shape[1] * shape[2] + - (start[1] + y) * shape[2] + start[2]; + size_t aidx = + (start[0] + x) * shape[1] * shape[2] + (start[1] + y) * shape[2] + start[2]; for (size_t z = 0; z < count[2]; ++z) { if (*bp != a[aidx]) { firstNonEqPoint = {x, y, z}; - std::cout << " Non-match at pos = " - << adios2::ToString(firstNonEqPoint) - << " : a = " << a[aidx] << ", b = " << *bp - << std::endl; + std::cout << " Non-match at pos = " << adios2::ToString(firstNonEqPoint) + << " : a = " << a[aidx] << ", b = " << *bp << std::endl; return false; } ++bp; @@ -537,29 +498,26 @@ bool compareSelection3D_RM(const double *a, const adios2::Dims &shape, return true; } -bool compareSelection3D_CM(const double *a, const adios2::Dims &shape, - const adios2::Dims &start, const adios2::Dims &count, - double *b, adios2::Dims &firstNonEqPoint) +bool compareSelection3D_CM(const double *a, const adios2::Dims &shape, const adios2::Dims &start, + const adios2::Dims &count, double *b, adios2::Dims &firstNonEqPoint) { std::cout << " compare Block: shape = " << adios2::ToString(shape) - << " start = " << adios2::ToString(start) - << " count = " << adios2::ToString(count) << std::endl; + << " start = " << adios2::ToString(start) << " count = " << adios2::ToString(count) + << std::endl; double *bp = b; for (size_t z = 0; z < count[2]; ++z) { for (size_t y = 0; y < count[1]; ++y) { - size_t aidx = (start[2] + z) * shape[0] * shape[1] + - (start[1] + y) * shape[0] + start[0]; + size_t aidx = + (start[2] + z) * shape[0] * shape[1] + (start[1] + y) * shape[0] + start[0]; for (size_t x = 0; x < count[0]; ++x) { if (*bp != a[aidx]) { firstNonEqPoint = {x, y, z}; - std::cout << " Non-match at pos = " - << adios2::ToString(firstNonEqPoint) - << " : a = " << a[aidx] << ", b = " << *bp - << std::endl; + std::cout << " Non-match at pos = " << adios2::ToString(firstNonEqPoint) + << " : a = " << a[aidx] << ", b = " << *bp << std::endl; return false; } ++bp; @@ -622,8 +580,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) adios2::Dims start{0, 0, 0}; double b[C1 * C2 * C3]; - adios2::Variable var = - ioWrite.DefineVariable("a", shape, start, count); + adios2::Variable var = ioWrite.DefineVariable("a", shape, start, count); /*adios2::Variable vara1 = ioWrite.DefineVariable("a1", shape, start, shape);*/ @@ -666,8 +623,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) adios2::Dims firstNonMatch{0, 0, 0}; std::vector res; - std::cout << "Row-major read selections with entire blocks..." - << std::endl; + std::cout << "Row-major read selections with entire blocks..." << std::endl; /* Entire array */ s = {0, 0, 0}; @@ -675,8 +631,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), DIM1 * DIM2 * DIM3); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* Single block in the center */ s = {5, 4, 3}; @@ -684,8 +639,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* Two blocks in X direction */ s = {5, 4, 3}; @@ -693,8 +647,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* Three blocks in Y direction */ s = {5, 0, 3}; @@ -702,8 +655,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* Two blocks in Z direction */ s = {5, 4, 0}; @@ -711,8 +663,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* Four blocks in X-Z direction */ s = {5, 4, 3}; @@ -720,8 +671,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* 8 blocks in X-Y-Z direction */ s = {5, 4, 3}; @@ -729,15 +679,13 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* * Partial blocks */ - std::cout << "Row-major read selections with partial blocks..." - << std::endl; + std::cout << "Row-major read selections with partial blocks..." << std::endl; /* center part of single block in center */ s = {6, 5, 4}; @@ -745,8 +693,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in X direction */ s = {6, 5, 4}; @@ -754,8 +701,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in Y direction */ s = {6, 5, 4}; @@ -763,8 +709,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into three blocks in Y direction while contiguous in Z direction, making the read of the @@ -774,8 +719,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in Z direction */ s = {6, 5, 4}; @@ -783,8 +727,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in X-Y direction */ s = {1, 5, 4}; @@ -792,8 +735,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in X-Z direction */ s = {1, 5, 4}; @@ -801,8 +743,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in Y-Z direction */ s = {6, 5, 4}; @@ -810,8 +751,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into six blocks in X-Z direction */ s = {1, 5, 4}; @@ -819,8 +759,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); /* Center block plus 1 in each direction, cutting into all blocks */ /* ./bin/bpls -la testing/adios2/engine/bp/bp4/ADIOSSelection3D.bp @@ -831,8 +770,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_CM(a, shapeF, s, c, res.data(), firstNonMatch)); engine.EndStep(); engine.Close(); @@ -855,8 +793,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) adios2::Dims firstNonMatch{0, 0, 0}; std::vector res; - std::cout << "Column-major read selections with entire blocks..." - << std::endl; + std::cout << "Column-major read selections with entire blocks..." << std::endl; /* Entire array */ s = {0, 0, 0}; @@ -864,8 +801,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), DIM1 * DIM2 * DIM3); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* Single block in the center */ s = {3, 4, 5}; @@ -873,8 +809,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* Two blocks in X direction */ s = {3, 4, 5}; @@ -882,8 +817,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* Three blocks in Y direction */ s = {3, 0, 5}; @@ -891,8 +825,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* Two blocks in Z direction */ s = {0, 4, 5}; @@ -900,8 +833,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* Four blocks in X-Z direction */ s = {3, 4, 5}; @@ -909,8 +841,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* 8 blocks in X-Y-Z direction */ s = {3, 4, 5}; @@ -918,11 +849,9 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); - std::cout << "Column-major read selections with partial blocks..." - << std::endl; + std::cout << "Column-major read selections with partial blocks..." << std::endl; /* center part of single block in center */ s = {4, 5, 6}; @@ -930,8 +859,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in X direction */ s = {4, 5, 6}; @@ -939,8 +867,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in Y direction */ s = {4, 5, 6}; @@ -948,8 +875,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into three blocks in Y direction while contiguous in Z direction, making the read of the @@ -959,8 +885,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in Z direction */ s = {4, 5, 6}; @@ -968,8 +893,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in X-Y direction */ s = {1, 5, 6}; @@ -977,8 +901,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in X-Z direction */ s = {1, 5, 6}; @@ -986,8 +909,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in Y-Z direction */ s = {4, 5, 6}; @@ -995,8 +917,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into six blocks in X-Z direction */ s = {1, 5, 6}; @@ -1004,8 +925,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); /* Center block plus 1 in each direction, cutting into all blocks */ /* ./bin/bpls -la testing/adios2/engine/bp/bp4/ADIOSSelection3D.bp @@ -1016,8 +936,7 @@ TEST_F(ADIOSSelectionColumnMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_RM(a, shape, s, c, res.data(), firstNonMatch)); engine.EndStep(); engine.Close(); diff --git a/testing/adios2/engine/bp/TestBPSelectionsOnRowMajorData.cpp b/testing/adios2/engine/bp/TestBPSelectionsOnRowMajorData.cpp index 365c175359..b81be71f46 100644 --- a/testing/adios2/engine/bp/TestBPSelectionsOnRowMajorData.cpp +++ b/testing/adios2/engine/bp/TestBPSelectionsOnRowMajorData.cpp @@ -23,9 +23,8 @@ class ADIOSSelectionRowMajorTest : public ::testing::Test ADIOSSelectionRowMajorTest() = default; }; -void copySelection2D(const double *a, const adios2::Dims &shape, - const adios2::Dims &start, const adios2::Dims &count, - double *b) +void copySelection2D(const double *a, const adios2::Dims &shape, const adios2::Dims &start, + const adios2::Dims &count, double *b) { /*std::cout << " copy Block: shape = " << adios2::ToString(shape) << " start = " << adios2::ToString(start) @@ -77,13 +76,12 @@ void copySelection2D(const double *a, const adios2::Dims &shape, return true; }*/ -bool compareSelection2D(const double *a, const adios2::Dims &shape, - const adios2::Dims &start, const adios2::Dims &count, - double *b, adios2::Dims &firstNonEqPoint) +bool compareSelection2D(const double *a, const adios2::Dims &shape, const adios2::Dims &start, + const adios2::Dims &count, double *b, adios2::Dims &firstNonEqPoint) { std::cout << " compare Block: shape = " << adios2::ToString(shape) - << " start = " << adios2::ToString(start) - << " count = " << adios2::ToString(count) << std::endl; + << " start = " << adios2::ToString(start) << " count = " << adios2::ToString(count) + << std::endl; bool match = true; double *bp = b; for (size_t x = 0; x < count[0]; ++x) @@ -94,10 +92,8 @@ bool compareSelection2D(const double *a, const adios2::Dims &shape, if (*bp != a[aidx]) { firstNonEqPoint = {x, y}; - std::cout << " Non-match at pos = " - << adios2::ToString(firstNonEqPoint) - << " : a = " << a[aidx] << ", b = " << *bp - << std::endl; + std::cout << " Non-match at pos = " << adios2::ToString(firstNonEqPoint) + << " : a = " << a[aidx] << ", b = " << *bp << std::endl; match = false; } ++bp; @@ -107,13 +103,12 @@ bool compareSelection2D(const double *a, const adios2::Dims &shape, return match; } -bool compareSelection2D_F(const double *a, const adios2::Dims &shape, - const adios2::Dims &start, const adios2::Dims &count, - double *b, adios2::Dims &firstNonEqPoint) +bool compareSelection2D_F(const double *a, const adios2::Dims &shape, const adios2::Dims &start, + const adios2::Dims &count, double *b, adios2::Dims &firstNonEqPoint) { std::cout << " compare Block: shape = " << adios2::ToString(shape) - << " start = " << adios2::ToString(start) - << " count = " << adios2::ToString(count) << std::endl; + << " start = " << adios2::ToString(start) << " count = " << adios2::ToString(count) + << std::endl; bool match = true; double *bp = b; for (size_t y = 0; y < count[1]; ++y) @@ -124,10 +119,8 @@ bool compareSelection2D_F(const double *a, const adios2::Dims &shape, if (*bp != a[aidx]) { firstNonEqPoint = {y, x}; - std::cout << " Non-match at pos = " - << adios2::ToString(firstNonEqPoint) - << " : a = " << a[aidx] << ", b = " << *bp - << std::endl; + std::cout << " Non-match at pos = " << adios2::ToString(firstNonEqPoint) + << " : a = " << a[aidx] << ", b = " << *bp << std::endl; match = false; } ++bp; @@ -182,8 +175,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) double b[C1 * C2]; - adios2::Variable var = - ioWrite.DefineVariable("a", shape, start, count); + adios2::Variable var = ioWrite.DefineVariable("a", shape, start, count); /*adios2::Variable vara1 = ioWrite.DefineVariable("a1", shape, start, shape);*/ @@ -223,15 +215,13 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) adios2::Dims firstNonMatch{0, 0}; std::vector res; - std::cout << "Row-major read selections with entire blocks..." - << std::endl; + std::cout << "Row-major read selections with entire blocks..." << std::endl; /* Entire array */ var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), DIM1 * DIM2); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); /* Single block in the center */ s = {5, 4}; @@ -239,8 +229,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); /* Two blocks in X direction */ s = {5, 4}; @@ -248,8 +237,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); /* Three blocks in Y direction */ s = {5, 0}; @@ -257,8 +245,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); /* Four blocks in X-Y direction */ s = {5, 4}; @@ -266,15 +253,13 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); /* * Partial blocks */ - std::cout << "Row-major read selections with partial blocks..." - << std::endl; + std::cout << "Row-major read selections with partial blocks..." << std::endl; /* center part of single block in center */ s = {6, 5}; @@ -282,8 +267,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in X direction */ s = {6, 5}; @@ -291,8 +275,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in Y direction */ s = {6, 5}; @@ -300,8 +283,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into three blocks in Y direction */ s = {6, 1}; @@ -309,8 +291,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in X-Y direction */ s = {1, 5}; @@ -318,8 +299,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); /* Center block plus 1 in each direction, cutting into all blocks */ /* ./bin/bpls -la testing/adios2/engine/bp/bp4/ADIOSSelection2D.bp @@ -330,8 +310,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D(a, shape, s, c, res.data(), firstNonMatch)); engine.EndStep(); engine.Close(); @@ -354,8 +333,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) adios2::Dims firstNonMatch{0, 0, 0}; std::vector res; - std::cout << "Column-major read selections with entire blocks..." - << std::endl; + std::cout << "Column-major read selections with entire blocks..." << std::endl; /* Entire array */ s = {0, 0}; @@ -363,8 +341,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), DIM1 * DIM2); - EXPECT_TRUE( - compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* First block */ s = {0, 0}; @@ -372,8 +349,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* Single block in the center */ s = {4, 5}; @@ -381,8 +357,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* Two blocks in X (slow) direction */ s = {4, 5}; @@ -390,8 +365,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* Three blocks in Y (fast) direction */ s = {4, 0}; @@ -399,8 +373,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* Four blocks in X-Y direction */ s = {4, 5}; @@ -408,11 +381,9 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); - std::cout << "Column-major read selections with partial blocks..." - << std::endl; + std::cout << "Column-major read selections with partial blocks..." << std::endl; /* center part of single block in center */ s = {5, 6}; @@ -420,8 +391,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in X direction */ s = {5, 6}; @@ -429,8 +399,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in Y direction */ s = {5, 6}; @@ -438,8 +407,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into three blocks in Y direction */ s = {5, 1}; @@ -447,8 +415,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in X-Y direction */ s = {5, 1}; @@ -456,8 +423,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* Center block plus 1 in each direction, cutting into all blocks */ /* ./bin/bpls -la testing/adios2/engine/bp/bp4/ADIOSSelection2D.bp @@ -468,17 +434,15 @@ TEST_F(ADIOSSelectionRowMajorTest, 2D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1]); - EXPECT_TRUE( - compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection2D_F(a, shapeF, s, c, res.data(), firstNonMatch)); engine.EndStep(); engine.Close(); } } -void copySelection3D(const double *a, const adios2::Dims &shape, - const adios2::Dims &start, const adios2::Dims &count, - double *b) +void copySelection3D(const double *a, const adios2::Dims &shape, const adios2::Dims &start, + const adios2::Dims &count, double *b) { /*std::cout << " copy Block: shape = " << adios2::ToString(shape) << " start = " << adios2::ToString(start) @@ -490,8 +454,8 @@ void copySelection3D(const double *a, const adios2::Dims &shape, { for (size_t z = 0; z < count[2]; ++z) { - const size_t aidx = (start[0] + x) * shape[1] * shape[2] + - (start[1] + y) * shape[2] + start[2] + z; + const size_t aidx = + (start[0] + x) * shape[1] * shape[2] + (start[1] + y) * shape[2] + start[2] + z; /*if (x == 0 && y == 0 && z == 0) { std::cout << " idx of pos = " << adios2::ToString({x, y, z}) @@ -505,13 +469,12 @@ void copySelection3D(const double *a, const adios2::Dims &shape, } } -bool compareSelection3D(const double *a, const adios2::Dims &shape, - const adios2::Dims &start, const adios2::Dims &count, - double *b, adios2::Dims &firstNonEqPoint) +bool compareSelection3D(const double *a, const adios2::Dims &shape, const adios2::Dims &start, + const adios2::Dims &count, double *b, adios2::Dims &firstNonEqPoint) { std::cout << " compare Block: shape = " << adios2::ToString(shape) - << " start = " << adios2::ToString(start) - << " count = " << adios2::ToString(count) << std::endl; + << " start = " << adios2::ToString(start) << " count = " << adios2::ToString(count) + << std::endl; double *bp = b; for (size_t x = 0; x < count[0]; ++x) { @@ -519,16 +482,14 @@ bool compareSelection3D(const double *a, const adios2::Dims &shape, { for (size_t z = 0; z < count[2]; ++z) { - const size_t aidx = (start[0] + x) * shape[1] * shape[2] + - (start[1] + y) * shape[2] + start[2] + z; + const size_t aidx = + (start[0] + x) * shape[1] * shape[2] + (start[1] + y) * shape[2] + start[2] + z; if (*bp != a[aidx]) { firstNonEqPoint = {x, y, z}; - std::cout << " Non-match at pos = " - << adios2::ToString(firstNonEqPoint) - << " : a = " << a[aidx] << ", b = " << *bp - << std::endl; + std::cout << " Non-match at pos = " << adios2::ToString(firstNonEqPoint) + << " : a = " << a[aidx] << ", b = " << *bp << std::endl; return false; } ++bp; @@ -538,29 +499,26 @@ bool compareSelection3D(const double *a, const adios2::Dims &shape, return true; } -bool compareSelection3D_F(const double *a, const adios2::Dims &shape, - const adios2::Dims &start, const adios2::Dims &count, - double *b, adios2::Dims &firstNonEqPoint) +bool compareSelection3D_F(const double *a, const adios2::Dims &shape, const adios2::Dims &start, + const adios2::Dims &count, double *b, adios2::Dims &firstNonEqPoint) { std::cout << " compare Block: shape = " << adios2::ToString(shape) - << " start = " << adios2::ToString(start) - << " count = " << adios2::ToString(count) << std::endl; + << " start = " << adios2::ToString(start) << " count = " << adios2::ToString(count) + << std::endl; double *bp = b; for (size_t z = 0; z < count[2]; ++z) { for (size_t y = 0; y < count[1]; ++y) { - size_t aidx = (start[2] + z) * shape[0] * shape[1] + - (start[1] + y) * shape[0] + start[0]; + size_t aidx = + (start[2] + z) * shape[0] * shape[1] + (start[1] + y) * shape[0] + start[0]; for (size_t x = 0; x < count[0]; ++x) { if (*bp != a[aidx]) { firstNonEqPoint = {x, y, z}; - std::cout << " Non-match at pos = " - << adios2::ToString(firstNonEqPoint) - << " : a = " << a[aidx] << ", b = " << *bp - << std::endl; + std::cout << " Non-match at pos = " << adios2::ToString(firstNonEqPoint) + << " : a = " << a[aidx] << ", b = " << *bp << std::endl; return false; } ++bp; @@ -620,8 +578,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) adios2::Dims start{0, 0, 0}; double b[C1 * C2 * C3]; - adios2::Variable var = - ioWrite.DefineVariable("a", shape, start, count); + adios2::Variable var = ioWrite.DefineVariable("a", shape, start, count); /*adios2::Variable vara1 = ioWrite.DefineVariable("a1", shape, start, shape);*/ @@ -664,15 +621,13 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) adios2::Dims firstNonMatch{0, 0, 0}; std::vector res; - std::cout << "Row-major read selections with entire blocks..." - << std::endl; + std::cout << "Row-major read selections with entire blocks..." << std::endl; /* Entire array */ var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), DIM1 * DIM2 * DIM3); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* Single block in the center */ s = {5, 4, 3}; @@ -680,8 +635,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* Two blocks in X direction */ s = {5, 4, 3}; @@ -689,8 +643,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* Three blocks in Y direction */ s = {5, 0, 3}; @@ -698,8 +651,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* Two blocks in Z direction */ s = {5, 4, 0}; @@ -707,8 +659,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* Four blocks in X-Z direction */ s = {5, 4, 3}; @@ -716,8 +667,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* 8 blocks in X-Y-Z direction */ s = {5, 4, 3}; @@ -725,15 +675,13 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* * Partial blocks */ - std::cout << "Row-major read selections with partial blocks..." - << std::endl; + std::cout << "Row-major read selections with partial blocks..." << std::endl; /* center part of single block in center */ s = {6, 5, 4}; @@ -741,8 +689,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in X direction */ s = {6, 5, 4}; @@ -750,8 +697,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in Y direction */ s = {6, 5, 4}; @@ -759,8 +705,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into three blocks in Y direction while contiguous in Z direction, making the read of the @@ -770,8 +715,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in Z direction */ s = {6, 5, 4}; @@ -779,8 +723,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in X-Y direction */ s = {1, 5, 4}; @@ -788,8 +731,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in X-Z direction */ s = {1, 5, 4}; @@ -797,8 +739,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in Y-Z direction */ s = {6, 5, 4}; @@ -806,8 +747,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* partial selection cutting into six blocks in X-Z direction */ s = {1, 5, 4}; @@ -815,8 +755,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); /* Center block plus 1 in each direction, cutting into all blocks */ /* ./bin/bpls -la testing/adios2/engine/bp/bp4/ADIOSSelection3D.bp @@ -827,8 +766,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D(a, shape, s, c, res.data(), firstNonMatch)); engine.EndStep(); engine.Close(); @@ -851,15 +789,13 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) adios2::Dims firstNonMatch{0, 0, 0}; std::vector res; - std::cout << "Column-major read selections with entire blocks..." - << std::endl; + std::cout << "Column-major read selections with entire blocks..." << std::endl; /* Entire array */ var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), DIM1 * DIM2 * DIM3); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* Single block in the center */ s = {3, 4, 5}; @@ -867,8 +803,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* Two blocks in X direction */ s = {3, 4, 5}; @@ -876,8 +811,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* Three blocks in Y direction */ s = {3, 0, 5}; @@ -885,8 +819,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* Two blocks in Z direction */ s = {0, 4, 5}; @@ -894,8 +827,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* Four blocks in X-Z direction */ s = {3, 4, 5}; @@ -903,8 +835,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* 8 blocks in X-Y-Z direction */ s = {3, 4, 5}; @@ -912,11 +843,9 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); - std::cout << "Column-major read selections with partial blocks..." - << std::endl; + std::cout << "Column-major read selections with partial blocks..." << std::endl; /* center part of single block in center */ s = {4, 5, 6}; @@ -924,8 +853,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in X direction */ s = {4, 5, 6}; @@ -933,8 +861,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in Y direction */ s = {4, 5, 6}; @@ -942,8 +869,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into three blocks in Y direction while contiguous in Z direction, making the read of the @@ -953,8 +879,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into two blocks in Z direction */ s = {4, 5, 6}; @@ -962,8 +887,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in X-Y direction */ s = {1, 5, 6}; @@ -971,8 +895,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in X-Z direction */ s = {1, 5, 6}; @@ -980,8 +903,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into four blocks in Y-Z direction */ s = {4, 5, 6}; @@ -989,8 +911,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* partial selection cutting into six blocks in X-Z direction */ s = {1, 5, 6}; @@ -998,8 +919,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); /* Center block plus 1 in each direction, cutting into all blocks */ /* ./bin/bpls -la testing/adios2/engine/bp/bp4/ADIOSSelection3D.bp @@ -1010,8 +930,7 @@ TEST_F(ADIOSSelectionRowMajorTest, 3D) var.SetSelection({s, c}); engine.Get(var, res, adios2::Mode::Sync); EXPECT_EQ(res.size(), c[0] * c[1] * c[2]); - EXPECT_TRUE( - compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); + EXPECT_TRUE(compareSelection3D_F(a, shapeF, s, c, res.data(), firstNonMatch)); engine.EndStep(); engine.Close(); diff --git a/testing/adios2/engine/bp/TestBPStepsFileGlobalArray.cpp b/testing/adios2/engine/bp/TestBPStepsFileGlobalArray.cpp index c0389f6bc0..cb44c03991 100644 --- a/testing/adios2/engine/bp/TestBPStepsFileGlobalArray.cpp +++ b/testing/adios2/engine/bp/TestBPStepsFileGlobalArray.cpp @@ -27,8 +27,7 @@ class BPStepsFileGlobalArray : public ::testing::Test protected: BPStepsFileGlobalArray() = default; - const DataArray I32 = { - {512, 513, -510, 515, -508, 517, -506, 519, -504, 521}}; + const DataArray I32 = {{512, 513, -510, 515, -508, 517, -506, 519, -504, 521}}; DataArray GenerateData(int step, int rank, int size) { @@ -85,9 +84,8 @@ std::string ReadModeToString(ReadMode r) return "unknown"; } -class BPStepsFileGlobalArrayReaders -: public BPStepsFileGlobalArray, - public ::testing::WithParamInterface +class BPStepsFileGlobalArrayReaders : public BPStepsFileGlobalArray, + public ::testing::WithParamInterface { protected: ReadMode GetReadMode() { return GetParam(); }; @@ -97,8 +95,7 @@ class BPStepsFileGlobalArrayReaders TEST_P(BPStepsFileGlobalArrayReaders, EveryStep) { const ReadMode readMode = GetReadMode(); - std::string fname_prefix = - "BPStepsFileGlobalArray.EveryStep." + ReadModeToString(readMode); + std::string fname_prefix = "BPStepsFileGlobalArray.EveryStep." + ReadModeToString(readMode); int mpiRank = 0, mpiSize = 1; const std::size_t NSteps = 4; @@ -142,8 +139,7 @@ TEST_P(BPStepsFileGlobalArrayReaders, EveryStep) // Generate test data for each process uniquely m_TestData[step] = GenerateData(step, mpiRank, mpiSize); std::cout << "Rank " << mpiRank << " write step " << step << ": " - << ArrayToString(m_TestData[step].data(), Nx) - << std::endl; + << ArrayToString(m_TestData[step].data(), Nx) << std::endl; engine.BeginStep(); engine.Put(var_i32, m_TestData[step].data()); engine.EndStep(); @@ -168,8 +164,7 @@ TEST_P(BPStepsFileGlobalArrayReaders, EveryStep) if (!mpiRank) { - std::cout << "Read with File reading mode, read all steps at once" - << std::endl; + std::cout << "Read with File reading mode, read all steps at once" << std::endl; } auto var_i32 = io.InquireVariable("i32"); EXPECT_TRUE(var_i32); @@ -195,8 +190,7 @@ TEST_P(BPStepsFileGlobalArrayReaders, EveryStep) std::array d; engine.Get(var_i32, d.data(), adios2::Mode::Sync); std::cout << "Rank " << mpiRank - << " read all steps: " << ArrayToString(d.data(), NSteps * Nx) - << std::endl; + << " read all steps: " << ArrayToString(d.data(), NSteps * Nx) << std::endl; for (size_t step = 0; step < NSteps; ++step) { for (size_t i = 0; i < Nx; ++i) @@ -215,8 +209,7 @@ TEST_P(BPStepsFileGlobalArrayReaders, EveryStep) if (!mpiRank) { - std::cout << "Read with File reading mode, read step by step" - << std::endl; + std::cout << "Read with File reading mode, read step by step" << std::endl; } auto var_i32 = io.InquireVariable("i32"); EXPECT_TRUE(var_i32); @@ -262,8 +255,7 @@ TEST_P(BPStepsFileGlobalArrayReaders, EveryStep) var_i32.SetBlockSelection(blockID); DataArray d; engine.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << step - << " block " << blockID << ": " + std::cout << "Rank " << mpiRank << " read step " << step << " block " << blockID << ": " << ArrayToString(d.data(), Nx) << std::endl; // Doesn't work with all engines // auto start = var_i32.Start(); @@ -286,8 +278,7 @@ TEST_P(BPStepsFileGlobalArrayReaders, EveryStep) if (!mpiRank) { - std::cout << "Read with Stream reading mode, read step by step" - << std::endl; + std::cout << "Read with Stream reading mode, read step by step" << std::endl; } for (size_t step = 0; step < NSteps; ++step) { @@ -334,8 +325,7 @@ TEST_P(BPStepsFileGlobalArrayReaders, EveryStep) var_i32.SetBlockSelection(blockID); DataArray d; engine.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << step - << " block " << blockID << ": " + std::cout << "Rank " << mpiRank << " read step " << step << " block " << blockID << ": " << ArrayToString(d.data(), Nx) << std::endl; // Doesn't work with all engines // auto start = var_i32.Start(); @@ -359,8 +349,7 @@ TEST_P(BPStepsFileGlobalArrayReaders, EveryStep) TEST_P(BPStepsFileGlobalArrayReaders, NewVarPerStep) { const ReadMode readMode = GetReadMode(); - std::string fname_prefix = - "BPStepsFileGlobalArray.NewVarPerStep." + ReadModeToString(readMode); + std::string fname_prefix = "BPStepsFileGlobalArray.NewVarPerStep." + ReadModeToString(readMode); int mpiRank = 0, mpiSize = 1; const std::size_t NSteps = 4; @@ -383,9 +372,7 @@ TEST_P(BPStepsFileGlobalArrayReaders, NewVarPerStep) fname = fname_prefix + ".Serial.bp"; #endif - auto lf_VarName = [](std::size_t step) -> std::string { - return "i32_" + std::to_string(step); - }; + auto lf_VarName = [](std::size_t step) -> std::string { return "i32_" + std::to_string(step); }; // Write test data using ADIOS2 { @@ -407,10 +394,8 @@ TEST_P(BPStepsFileGlobalArrayReaders, NewVarPerStep) auto var = io.DefineVariable(varName, shape, start, count); // Generate test data for each process uniquely m_TestData[step] = GenerateData(step, mpiRank, mpiSize); - std::cout << "Rank " << mpiRank << " write step " << step << " var " - << varName << ": " - << ArrayToString(m_TestData[step].data(), Nx) - << std::endl; + std::cout << "Rank " << mpiRank << " write step " << step << " var " << varName << ": " + << ArrayToString(m_TestData[step].data(), Nx) << std::endl; engine.BeginStep(); engine.Put(var, m_TestData[step].data()); engine.EndStep(); @@ -436,9 +421,7 @@ TEST_P(BPStepsFileGlobalArrayReaders, NewVarPerStep) /// Use SetStepSelection(0,1) explicitly if (!mpiRank) { - std::cout - << "Read with File reading mode using explicit SetStepSelection" - << std::endl; + std::cout << "Read with File reading mode using explicit SetStepSelection" << std::endl; } for (size_t step = 0; step < NSteps; ++step) { @@ -483,8 +466,7 @@ TEST_P(BPStepsFileGlobalArrayReaders, NewVarPerStep) /// tested if (!mpiRank) { - std::cout << "Read with File reading mode without SetStepSelection" - << std::endl; + std::cout << "Read with File reading mode without SetStepSelection" << std::endl; } for (size_t step = 0; step < NSteps; ++step) { @@ -516,10 +498,9 @@ TEST_P(BPStepsFileGlobalArrayReaders, NewVarPerStep) /// Read back block by block and check data if (!mpiRank) { - std::cout - << "Read with File reading mode using explicit SetStepSelection" - ", block by block" - << std::endl; + std::cout << "Read with File reading mode using explicit SetStepSelection" + ", block by block" + << std::endl; } for (size_t step = 0; step < NSteps; ++step) { @@ -533,8 +514,7 @@ TEST_P(BPStepsFileGlobalArrayReaders, NewVarPerStep) var.SetBlockSelection(blockID); DataArray d; engine.Get(var, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << step - << " block " << blockID << ": " + std::cout << "Rank " << mpiRank << " read step " << step << " block " << blockID << ": " << ArrayToString(d.data(), Nx) << std::endl; // Doesn't work with all engines // auto start = var.Start(); @@ -556,8 +536,7 @@ TEST_P(BPStepsFileGlobalArrayReaders, NewVarPerStep) /// Read back each variable with Streaming reading mode if (!mpiRank) { - std::cout << "Read with Stream reading mode step by step" - << std::endl; + std::cout << "Read with Stream reading mode step by step" << std::endl; } for (size_t step = 0; step < NSteps; ++step) { @@ -593,9 +572,7 @@ TEST_P(BPStepsFileGlobalArrayReaders, NewVarPerStep) /// Read back each variable with Streaming reading mode if (!mpiRank) { - std::cout - << "Read with Stream reading mode step by step, block by block" - << std::endl; + std::cout << "Read with Stream reading mode step by step, block by block" << std::endl; } for (size_t step = 0; step < NSteps; ++step) { @@ -609,8 +586,7 @@ TEST_P(BPStepsFileGlobalArrayReaders, NewVarPerStep) var.SetBlockSelection(blockID); DataArray d; engine.Get(var, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << step - << " block " << blockID << ": " + std::cout << "Rank " << mpiRank << " read step " << step << " block " << blockID << ": " << ArrayToString(d.data(), Nx) << std::endl; // Doesn't work with all engines // auto start = var.Start(); @@ -634,10 +610,8 @@ TEST_P(BPStepsFileGlobalArrayReaders, NewVarPerStep) } INSTANTIATE_TEST_SUITE_P(BPStepsFileGlobalArray, BPStepsFileGlobalArrayReaders, - ::testing::Values(ReadMode::ReadFileAll, - ReadMode::ReadFileStepByStep, - ReadMode::ReadFileStepByStepBlocks, - ReadMode::ReadStream, + ::testing::Values(ReadMode::ReadFileAll, ReadMode::ReadFileStepByStep, + ReadMode::ReadFileStepByStepBlocks, ReadMode::ReadStream, ReadMode::ReadStreamBlocks)); class BPStepsFileGlobalArrayParameters @@ -656,9 +630,9 @@ TEST_P(BPStepsFileGlobalArrayParameters, EveryOtherStep) const std::size_t NSteps = GetNsteps(); const std::size_t Oddity = GetOddity(); const ReadMode readMode = GetReadMode(); - std::string fname_prefix = - "BPStepsFileGlobalArray.EveryOtherStep.Steps" + std::to_string(NSteps) + - ".Oddity" + std::to_string(Oddity) + "." + ReadModeToString(readMode); + std::string fname_prefix = "BPStepsFileGlobalArray.EveryOtherStep.Steps" + + std::to_string(NSteps) + ".Oddity" + std::to_string(Oddity) + "." + + ReadModeToString(readMode); int mpiRank = 0, mpiSize = 1; #if ADIOS2_USE_MPI @@ -687,9 +661,8 @@ TEST_P(BPStepsFileGlobalArrayParameters, EveryOtherStep) { if (!mpiRank) { - std::cout << "Write one variable in every " - << (Oddity ? "ODD" : "EVEN") << " steps, within " - << std::to_string(NSteps) << " steps" << std::endl; + std::cout << "Write one variable in every " << (Oddity ? "ODD" : "EVEN") + << " steps, within " << std::to_string(NSteps) << " steps" << std::endl; } adios2::IO io = adios.DeclareIO("Write"); if (!engineName.empty()) @@ -709,10 +682,8 @@ TEST_P(BPStepsFileGlobalArrayParameters, EveryOtherStep) if (step % 2 == static_cast(Oddity)) { m_TestData.push_back(GenerateData(step, mpiRank, mpiSize)); - std::cout << "Rank " << mpiRank << " write step " << step - << ": " - << ArrayToString(m_TestData[stepsWritten].data(), Nx) - << std::endl; + std::cout << "Rank " << mpiRank << " write step " << step << ": " + << ArrayToString(m_TestData[stepsWritten].data(), Nx) << std::endl; engine.Put(var_i32, m_TestData[stepsWritten].data()); ++stepsWritten; } @@ -739,8 +710,7 @@ TEST_P(BPStepsFileGlobalArrayParameters, EveryOtherStep) /// Read back the whole thing and check data if (!mpiRank) { - std::cout << "Read with File reading mode, read all steps at once" - << std::endl; + std::cout << "Read with File reading mode, read all steps at once" << std::endl; } auto var_i32 = io.InquireVariable("i32"); @@ -753,8 +723,7 @@ TEST_P(BPStepsFileGlobalArrayParameters, EveryOtherStep) var_i32.SetSelection({{start}, {Nx}}); std::vector d(stepsWritten * Nx, 0); engine.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank - << " read all steps: " << ArrayToString(d.data(), d.size()) + std::cout << "Rank " << mpiRank << " read all steps: " << ArrayToString(d.data(), d.size()) << std::endl; for (size_t s = 0; s < stepsWritten; ++s) { @@ -774,8 +743,7 @@ TEST_P(BPStepsFileGlobalArrayParameters, EveryOtherStep) /// Read back step by step and check data if (!mpiRank) { - std::cout << "Read with File reading mode, read step by step" - << std::endl; + std::cout << "Read with File reading mode, read step by step" << std::endl; } auto var_i32 = io.InquireVariable("i32"); @@ -825,9 +793,8 @@ TEST_P(BPStepsFileGlobalArrayParameters, EveryOtherStep) var_i32.SetBlockSelection(blockID); DataArray d; engine.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << s << " block " - << blockID << ": " << ArrayToString(d.data(), Nx) - << std::endl; + std::cout << "Rank " << mpiRank << " read step " << s << " block " << blockID << ": " + << ArrayToString(d.data(), Nx) << std::endl; // Doesn't work with all engines // auto start = var_i32.Start(); // auto count = var_i32.Count(); @@ -849,8 +816,7 @@ TEST_P(BPStepsFileGlobalArrayParameters, EveryOtherStep) /// Read back step by step and check data if (!mpiRank) { - std::cout << "Read with Stream reading mode step by step" - << std::endl; + std::cout << "Read with Stream reading mode step by step" << std::endl; } size_t writtenStep = 0; @@ -867,9 +833,8 @@ TEST_P(BPStepsFileGlobalArrayParameters, EveryOtherStep) var_i32.SetSelection({{start}, {Nx}}); DataArray d; engine.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read at step " << step - << " var-step " << writtenStep << ": " - << ArrayToString(d.data(), Nx) << std::endl; + std::cout << "Rank " << mpiRank << " read at step " << step << " var-step " + << writtenStep << ": " << ArrayToString(d.data(), Nx) << std::endl; for (size_t i = 0; i < Nx; ++i) { @@ -912,9 +877,9 @@ TEST_P(BPStepsFileGlobalArrayParameters, EveryOtherStep) var_i32.SetBlockSelection(blockID); DataArray d; engine.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read at step " << step - << " var-step " << writtenStep << " block " << blockID - << ": " << ArrayToString(d.data(), Nx) << std::endl; + std::cout << "Rank " << mpiRank << " read at step " << step << " var-step " + << writtenStep << " block " << blockID << ": " + << ArrayToString(d.data(), Nx) << std::endl; // Doesn't work with all engines // auto start = var_i32.Start(); // auto count = var_i32.Count(); diff --git a/testing/adios2/engine/bp/TestBPStepsFileLocalArray.cpp b/testing/adios2/engine/bp/TestBPStepsFileLocalArray.cpp index f8792528af..fc371c7ce9 100644 --- a/testing/adios2/engine/bp/TestBPStepsFileLocalArray.cpp +++ b/testing/adios2/engine/bp/TestBPStepsFileLocalArray.cpp @@ -28,8 +28,7 @@ class BPStepsFileLocalArray : public ::testing::Test protected: BPStepsFileLocalArray() = default; - const DataArray I32 = { - {512, 513, -510, 515, -508, 517, -506, 519, -504, 521}}; + const DataArray I32 = {{512, 513, -510, 515, -508, 517, -506, 519, -504, 521}}; DataArray GenerateData(int step, int rank, int size) { @@ -77,9 +76,8 @@ std::string ReadModeToString(const ReadMode r) return "unknown"; } -class BPStepsFileLocalArrayReaders -: public BPStepsFileLocalArray, - public ::testing::WithParamInterface +class BPStepsFileLocalArrayReaders : public BPStepsFileLocalArray, + public ::testing::WithParamInterface { protected: ReadMode GetReadMode() { return GetParam(); }; @@ -89,8 +87,7 @@ class BPStepsFileLocalArrayReaders TEST_P(BPStepsFileLocalArrayReaders, EveryStep) { const ReadMode readMode = GetReadMode(); - std::string fname_prefix = - "BPStepsFileLocalArray.EveryStep." + ReadModeToString(readMode); + std::string fname_prefix = "BPStepsFileLocalArray.EveryStep." + ReadModeToString(readMode); int mpiRank = 0, mpiSize = 1; const std::size_t NSteps = 4; @@ -134,8 +131,7 @@ TEST_P(BPStepsFileLocalArrayReaders, EveryStep) // Generate test data for each process uniquely m_TestData[step] = GenerateData(step, mpiRank, mpiSize); std::cout << "Rank " << mpiRank << " write step " << step << ": " - << ArrayToString(m_TestData[step].data(), Nx) - << std::endl; + << ArrayToString(m_TestData[step].data(), Nx) << std::endl; engine.BeginStep(); engine.Put(var_i32, m_TestData[step].data()); engine.EndStep(); @@ -175,8 +171,7 @@ TEST_P(BPStepsFileLocalArrayReaders, EveryStep) var_i32.SetBlockSelection(blockID); DataArray d; engine.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << step - << " block " << blockID << ": " + std::cout << "Rank " << mpiRank << " read step " << step << " block " << blockID << ": " << ArrayToString(d.data(), Nx) << std::endl; auto start = var_i32.Start(); auto count = var_i32.Count(); @@ -214,8 +209,7 @@ TEST_P(BPStepsFileLocalArrayReaders, EveryStep) var_i32.SetBlockSelection(blockID); DataArray d; engine.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << step - << " block " << blockID << ": " + std::cout << "Rank " << mpiRank << " read step " << step << " block " << blockID << ": " << ArrayToString(d.data(), Nx) << std::endl; auto start = var_i32.Start(); auto count = var_i32.Count(); @@ -239,8 +233,7 @@ TEST_P(BPStepsFileLocalArrayReaders, EveryStep) TEST_P(BPStepsFileLocalArrayReaders, NewVarPerStep) { const ReadMode readMode = GetReadMode(); - std::string fname_prefix = - "BPStepsFileLocalArray.NewVarPerStep." + ReadModeToString(readMode); + std::string fname_prefix = "BPStepsFileLocalArray.NewVarPerStep." + ReadModeToString(readMode); int mpiRank = 0, mpiSize = 1; const std::size_t NSteps = 4; @@ -263,9 +256,7 @@ TEST_P(BPStepsFileLocalArrayReaders, NewVarPerStep) fname = fname_prefix + ".Serial.bp"; #endif - auto lf_VarName = [](int step) -> std::string { - return "i32_" + std::to_string(step); - }; + auto lf_VarName = [](int step) -> std::string { return "i32_" + std::to_string(step); }; // Write test data using ADIOS2 { @@ -287,10 +278,8 @@ TEST_P(BPStepsFileLocalArrayReaders, NewVarPerStep) auto var = io.DefineVariable(varName, shape, start, count); // Generate test data for each process uniquely m_TestData[step] = GenerateData(step, mpiRank, mpiSize); - std::cout << "Rank " << mpiRank << " write step " << step << " var " - << varName << ": " - << ArrayToString(m_TestData[step].data(), Nx) - << std::endl; + std::cout << "Rank " << mpiRank << " write step " << step << " var " << varName << ": " + << ArrayToString(m_TestData[step].data(), Nx) << std::endl; engine.BeginStep(); engine.Put(var, m_TestData[step].data()); engine.EndStep(); @@ -315,10 +304,9 @@ TEST_P(BPStepsFileLocalArrayReaders, NewVarPerStep) if (!mpiRank) { - std::cout - << "Read with File reading mode using explicit SetStepSelection" - ", block by block" - << std::endl; + std::cout << "Read with File reading mode using explicit SetStepSelection" + ", block by block" + << std::endl; } for (int step = 0; step < static_cast(NSteps); ++step) { @@ -332,8 +320,7 @@ TEST_P(BPStepsFileLocalArrayReaders, NewVarPerStep) var.SetBlockSelection(blockID); DataArray d; engine.Get(var, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << step - << " block " << blockID << ": " + std::cout << "Rank " << mpiRank << " read step " << step << " block " << blockID << ": " << ArrayToString(d.data(), Nx) << std::endl; // not ok on all engines // auto start = var.Start(); @@ -356,9 +343,7 @@ TEST_P(BPStepsFileLocalArrayReaders, NewVarPerStep) if (!mpiRank) { - std::cout - << "Read with Stream reading mode step by step, block by block" - << std::endl; + std::cout << "Read with Stream reading mode step by step, block by block" << std::endl; } for (int step = 0; step < static_cast(NSteps); ++step) { @@ -372,8 +357,7 @@ TEST_P(BPStepsFileLocalArrayReaders, NewVarPerStep) var.SetBlockSelection(blockID); DataArray d; engine.Get(var, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << step - << " block " << blockID << ": " + std::cout << "Rank " << mpiRank << " read step " << step << " block " << blockID << ": " << ArrayToString(d.data(), Nx) << std::endl; // not ok on all engines // auto start = var.Start(); @@ -417,9 +401,9 @@ TEST_P(BPStepsFileLocalArrayParameters, EveryOtherStep) const std::size_t NSteps = GetNsteps(); const std::size_t Oddity = GetOddity(); const ReadMode readMode = GetReadMode(); - std::string fname_prefix = - "BPStepsFileLocalArray.EveryOtherStep.Steps" + std::to_string(NSteps) + - ".Oddity" + std::to_string(Oddity) + "." + ReadModeToString(readMode); + std::string fname_prefix = "BPStepsFileLocalArray.EveryOtherStep.Steps" + + std::to_string(NSteps) + ".Oddity" + std::to_string(Oddity) + "." + + ReadModeToString(readMode); int mpiRank = 0, mpiSize = 1; #if ADIOS2_USE_MPI @@ -448,9 +432,8 @@ TEST_P(BPStepsFileLocalArrayParameters, EveryOtherStep) { if (!mpiRank) { - std::cout << "Write one variable in every " - << (Oddity ? "ODD" : "EVEN") << " steps, within " - << std::to_string(NSteps) << " steps" << std::endl; + std::cout << "Write one variable in every " << (Oddity ? "ODD" : "EVEN") + << " steps, within " << std::to_string(NSteps) << " steps" << std::endl; } adios2::IO io = adios.DeclareIO("Write"); if (!engineName.empty()) @@ -470,10 +453,8 @@ TEST_P(BPStepsFileLocalArrayParameters, EveryOtherStep) if (step % 2 == static_cast(Oddity)) { m_TestData.push_back(GenerateData(step, mpiRank, mpiSize)); - std::cout << "Rank " << mpiRank << " write step " << step - << ": " - << ArrayToString(m_TestData[stepsWritten].data(), Nx) - << std::endl; + std::cout << "Rank " << mpiRank << " write step " << step << ": " + << ArrayToString(m_TestData[stepsWritten].data(), Nx) << std::endl; engine.Put(var_i32, m_TestData[stepsWritten].data()); ++stepsWritten; } @@ -516,9 +497,8 @@ TEST_P(BPStepsFileLocalArrayParameters, EveryOtherStep) var_i32.SetBlockSelection(blockID); DataArray d; engine.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << s << " block " - << blockID << ": " << ArrayToString(d.data(), Nx) - << std::endl; + std::cout << "Rank " << mpiRank << " read step " << s << " block " << blockID << ": " + << ArrayToString(d.data(), Nx) << std::endl; // not ok on all engines // auto start = var_i32.Start(); // auto count = var_i32.Count(); @@ -541,9 +521,7 @@ TEST_P(BPStepsFileLocalArrayParameters, EveryOtherStep) if (!mpiRank) { - std::cout - << "Read with Stream reading mode step by step, block by block" - << std::endl; + std::cout << "Read with Stream reading mode step by step, block by block" << std::endl; } size_t writtenStep = 0; @@ -560,9 +538,8 @@ TEST_P(BPStepsFileLocalArrayParameters, EveryOtherStep) var_i32.SetBlockSelection(blockID); DataArray d; engine.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << step - << " block " << blockID << ": " - << ArrayToString(d.data(), Nx) << std::endl; + std::cout << "Rank " << mpiRank << " read step " << step << " block " << blockID + << ": " << ArrayToString(d.data(), Nx) << std::endl; // not ok on all engines // auto start = var_i32.Start(); // auto count = var_i32.Count(); diff --git a/testing/adios2/engine/bp/TestBPStepsInSituGlobalArray.cpp b/testing/adios2/engine/bp/TestBPStepsInSituGlobalArray.cpp index 0353cf3168..99239f0777 100644 --- a/testing/adios2/engine/bp/TestBPStepsInSituGlobalArray.cpp +++ b/testing/adios2/engine/bp/TestBPStepsInSituGlobalArray.cpp @@ -27,8 +27,7 @@ class BPStepsInSituGlobalArray : public ::testing::Test protected: BPStepsInSituGlobalArray() = default; - const DataArray I32 = { - {512, 513, -510, 515, -508, 517, -506, 519, -504, 521}}; + const DataArray I32 = {{512, 513, -510, 515, -508, 517, -506, 519, -504, 521}}; DataArray GenerateData(const int step, const int rank, const int size) { @@ -117,10 +116,7 @@ class BPStepsInSituGlobalArrayReaders public ::testing::WithParamInterface> { protected: - const std::vector &GetSchedule() - { - return Schedules[std::get<0>(GetParam())]; - }; + const std::vector &GetSchedule() { return Schedules[std::get<0>(GetParam())]; }; ReadMode GetReadMode() { return std::get<1>(GetParam()); }; size_t GetScheduleID() { return std::get<0>(GetParam()); }; }; @@ -134,8 +130,7 @@ TEST_P(BPStepsInSituGlobalArrayReaders, EveryStep) std::string BaseName = engineName; const std::string fname_prefix = "BPStepsInSituGlobalArray.EveryStep." + std::to_string(GetScheduleID()) + "." + - ReadModeToString(readMode) + "." + - engineName; + ReadModeToString(readMode) + "." + engineName; int mpiRank = 0, mpiSize = 1; #if ADIOS2_USE_MPI @@ -159,9 +154,8 @@ TEST_P(BPStepsInSituGlobalArrayReaders, EveryStep) if (!mpiRank) { - std::cout << "Test with Schedule " << GetScheduleID() << " " - << ScheduleToString(schedule) << " Read Mode " - << ReadModeToString(readMode) << std::endl; + std::cout << "Test with Schedule " << GetScheduleID() << " " << ScheduleToString(schedule) + << " Read Mode " << ReadModeToString(readMode) << std::endl; } // Start writer @@ -204,10 +198,8 @@ TEST_P(BPStepsInSituGlobalArrayReaders, EveryStep) // Generate test data for each process uniquely m_TestData.push_back(GenerateData(stepsWritten, mpiRank, mpiSize)); - std::cout << "Rank " << mpiRank << " write step " << stepsWritten - << ": " - << ArrayToString(m_TestData[stepsWritten].data(), Nx) - << std::endl; + std::cout << "Rank " << mpiRank << " write step " << stepsWritten << ": " + << ArrayToString(m_TestData[stepsWritten].data(), Nx) << std::endl; writer.BeginStep(); writer.Put(var_i32, m_TestData[stepsWritten].data()); writer.EndStep(); @@ -220,8 +212,7 @@ TEST_P(BPStepsInSituGlobalArrayReaders, EveryStep) /// Read back data with global selection if (!mpiRank) { - std::cout << "Read step " << stepsRead - << " with Global selection" << std::endl; + std::cout << "Read step " << stepsRead << " with Global selection" << std::endl; } reader.BeginStep(); @@ -233,8 +224,8 @@ TEST_P(BPStepsInSituGlobalArrayReaders, EveryStep) var_i32.SetSelection({{start}, {Nx}}); DataArray d; reader.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << stepsRead - << ": " << ArrayToString(d.data(), Nx) << std::endl; + std::cout << "Rank " << mpiRank << " read step " << stepsRead << ": " + << ArrayToString(d.data(), Nx) << std::endl; for (size_t i = 0; i < Nx; ++i) { EXPECT_EQ(d[i], m_TestData[stepsRead][i]); @@ -246,8 +237,7 @@ TEST_P(BPStepsInSituGlobalArrayReaders, EveryStep) /// Read back data with block selection if (!mpiRank) { - std::cout << "Read step " << stepsRead - << " with Block selection" << std::endl; + std::cout << "Read step " << stepsRead << " with Block selection" << std::endl; } reader.BeginStep(); @@ -259,9 +249,8 @@ TEST_P(BPStepsInSituGlobalArrayReaders, EveryStep) var_i32.SetBlockSelection(blockID); DataArray d; reader.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << stepsRead - << " block " << blockID << ": " - << ArrayToString(d.data(), Nx) << std::endl; + std::cout << "Rank " << mpiRank << " read step " << stepsRead << " block " + << blockID << ": " << ArrayToString(d.data(), Nx) << std::endl; auto start = var_i32.Start(); auto count = var_i32.Count(); EXPECT_EQ(start[0], mpiRank * Nx); @@ -292,8 +281,7 @@ TEST_P(BPStepsInSituGlobalArrayReaders, NewVarPerStep) std::string BaseName = engineName; const std::string fname_prefix = "BPStepsInSituGlobalArray.NewVarPerStep." + std::to_string(GetScheduleID()) + "." + - ReadModeToString(readMode) + "." + - engineName; + ReadModeToString(readMode) + "." + engineName; int mpiRank = 0, mpiSize = 1; #if ADIOS2_USE_MPI @@ -315,13 +303,10 @@ TEST_P(BPStepsInSituGlobalArrayReaders, NewVarPerStep) fname = fname_prefix + BaseName + ".Serial.bp"; #endif - auto lf_VarName = [](int step) -> std::string { - return "i32_" + std::to_string(step); - }; + auto lf_VarName = [](int step) -> std::string { return "i32_" + std::to_string(step); }; - std::cout << "Test with Schedule " << GetScheduleID() << " " - << ScheduleToString(schedule) << " Read Mode " - << ReadModeToString(readMode) << std::endl; + std::cout << "Test with Schedule " << GetScheduleID() << " " << ScheduleToString(schedule) + << " Read Mode " << ReadModeToString(readMode) << std::endl; // Start writer adios2::IO iow = adios.DeclareIO("Write"); @@ -361,14 +346,11 @@ TEST_P(BPStepsInSituGlobalArrayReaders, NewVarPerStep) } const std::string varName = lf_VarName(stepsWritten); - auto var = - iow.DefineVariable(varName, shape, start, count); + auto var = iow.DefineVariable(varName, shape, start, count); // Generate test data for each process uniquely m_TestData.push_back(GenerateData(stepsWritten, mpiRank, mpiSize)); - std::cout << "Rank " << mpiRank << " write step " << stepsWritten - << " var " << varName << ": " - << ArrayToString(m_TestData[stepsWritten].data(), Nx) - << std::endl; + std::cout << "Rank " << mpiRank << " write step " << stepsWritten << " var " << varName + << ": " << ArrayToString(m_TestData[stepsWritten].data(), Nx) << std::endl; writer.BeginStep(); writer.Put(var, m_TestData[stepsWritten].data()); writer.EndStep(); @@ -381,8 +363,7 @@ TEST_P(BPStepsInSituGlobalArrayReaders, NewVarPerStep) /// Read back data with global selection if (!mpiRank) { - std::cout << "Read step " << stepsRead - << " with Global selection" << std::endl; + std::cout << "Read step " << stepsRead << " with Global selection" << std::endl; } reader.BeginStep(); @@ -395,8 +376,8 @@ TEST_P(BPStepsInSituGlobalArrayReaders, NewVarPerStep) var.SetSelection({{start}, {Nx}}); DataArray d; reader.Get(var, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read var " << varName - << ": " << ArrayToString(d.data(), Nx) << std::endl; + std::cout << "Rank " << mpiRank << " read var " << varName << ": " + << ArrayToString(d.data(), Nx) << std::endl; for (size_t i = 0; i < Nx; ++i) { @@ -409,8 +390,7 @@ TEST_P(BPStepsInSituGlobalArrayReaders, NewVarPerStep) /// Read back data with block selection if (!mpiRank) { - std::cout << "Read step " << stepsRead - << " with Block selection" << std::endl; + std::cout << "Read step " << stepsRead << " with Block selection" << std::endl; } reader.BeginStep(); @@ -423,9 +403,8 @@ TEST_P(BPStepsInSituGlobalArrayReaders, NewVarPerStep) var.SetBlockSelection(blockID); DataArray d; reader.Get(var, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << stepsRead - << " block " << blockID << ": " - << ArrayToString(d.data(), Nx) << std::endl; + std::cout << "Rank " << mpiRank << " read step " << stepsRead << " block " + << blockID << ": " << ArrayToString(d.data(), Nx) << std::endl; auto start = var.Start(); auto count = var.Count(); EXPECT_EQ(start[0], mpiRank * Nx); @@ -447,28 +426,24 @@ TEST_P(BPStepsInSituGlobalArrayReaders, NewVarPerStep) reader.Close(); } -INSTANTIATE_TEST_SUITE_P( - BPStepsInSituGlobalArray, BPStepsInSituGlobalArrayReaders, - ::testing::Values(std::make_tuple(0, ReadMode::ReadGlobal), - std::make_tuple(1, ReadMode::ReadGlobal), - std::make_tuple(2, ReadMode::ReadGlobal), - std::make_tuple(3, ReadMode::ReadGlobal), - std::make_tuple(4, ReadMode::ReadGlobal), - std::make_tuple(0, ReadMode::ReadBlocks), - std::make_tuple(1, ReadMode::ReadBlocks), - std::make_tuple(2, ReadMode::ReadBlocks), - std::make_tuple(3, ReadMode::ReadBlocks), - std::make_tuple(4, ReadMode::ReadBlocks))); +INSTANTIATE_TEST_SUITE_P(BPStepsInSituGlobalArray, BPStepsInSituGlobalArrayReaders, + ::testing::Values(std::make_tuple(0, ReadMode::ReadGlobal), + std::make_tuple(1, ReadMode::ReadGlobal), + std::make_tuple(2, ReadMode::ReadGlobal), + std::make_tuple(3, ReadMode::ReadGlobal), + std::make_tuple(4, ReadMode::ReadGlobal), + std::make_tuple(0, ReadMode::ReadBlocks), + std::make_tuple(1, ReadMode::ReadBlocks), + std::make_tuple(2, ReadMode::ReadBlocks), + std::make_tuple(3, ReadMode::ReadBlocks), + std::make_tuple(4, ReadMode::ReadBlocks))); class BPStepsInSituGlobalArrayParameters : public BPStepsInSituGlobalArray, public ::testing::WithParamInterface> { protected: - const std::vector &GetSchedule() - { - return Schedules[std::get<0>(GetParam())]; - }; + const std::vector &GetSchedule() { return Schedules[std::get<0>(GetParam())]; }; size_t GetOddity() { return std::get<1>(GetParam()); }; ReadMode GetReadMode() { return std::get<2>(GetParam()); }; size_t GetScheduleID() { return std::get<0>(GetParam()); }; @@ -484,9 +459,8 @@ TEST_P(BPStepsInSituGlobalArrayParameters, EveryOtherStep) using namespace std; std::string BaseName = engineName; const std::string fname_prefix = - "BPStepsInSituGlobalArray.EveryOtherStep.Schedule" + - std::to_string(GetScheduleID()) + ".Oddity" + std::to_string(Oddity) + - "." + ReadModeToString(readMode) + "." + engineName; + "BPStepsInSituGlobalArray.EveryOtherStep.Schedule" + std::to_string(GetScheduleID()) + + ".Oddity" + std::to_string(Oddity) + "." + ReadModeToString(readMode) + "." + engineName; int mpiRank = 0, mpiSize = 1; #if ADIOS2_USE_MPI @@ -511,9 +485,9 @@ TEST_P(BPStepsInSituGlobalArrayParameters, EveryOtherStep) if (!mpiRank) { - std::cout << "Test with Schedule " << GetScheduleID() << " " - << ScheduleToString(schedule) << " Oddity " << Oddity - << " Read Mode " << ReadModeToString(readMode) << std::endl; + std::cout << "Test with Schedule " << GetScheduleID() << " " << ScheduleToString(schedule) + << " Oddity " << Oddity << " Read Mode " << ReadModeToString(readMode) + << std::endl; } // Start writer @@ -561,13 +535,10 @@ TEST_P(BPStepsInSituGlobalArrayParameters, EveryOtherStep) writer.Put(var_step, stepsWritten); if (stepsWritten % 2 == static_cast(Oddity)) { - m_TestData.push_back( - GenerateData(stepsWritten, mpiRank, mpiSize)); - std::cout << "Rank " << mpiRank << " at step " << stepsWritten - << " write var-step " << varStepsWritten << ": " - << ArrayToString(m_TestData[varStepsWritten].data(), - Nx) - << std::endl; + m_TestData.push_back(GenerateData(stepsWritten, mpiRank, mpiSize)); + std::cout << "Rank " << mpiRank << " at step " << stepsWritten << " write var-step " + << varStepsWritten << ": " + << ArrayToString(m_TestData[varStepsWritten].data(), Nx) << std::endl; writer.Put(var_i32, m_TestData[varStepsWritten].data()); ++varStepsWritten; } @@ -582,8 +553,7 @@ TEST_P(BPStepsInSituGlobalArrayParameters, EveryOtherStep) /// Read back data with global selection if (!mpiRank) { - std::cout << "Read step " << stepsRead - << " with Global selection" << std::endl; + std::cout << "Read step " << stepsRead << " with Global selection" << std::endl; } reader.BeginStep(); @@ -597,10 +567,8 @@ TEST_P(BPStepsInSituGlobalArrayParameters, EveryOtherStep) var_i32.SetSelection({{start}, {Nx}}); DataArray d; reader.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read at step " - << stepsRead << " var-step " << varStepsRead - << ": " << ArrayToString(d.data(), Nx) - << std::endl; + std::cout << "Rank " << mpiRank << " read at step " << stepsRead << " var-step " + << varStepsRead << ": " << ArrayToString(d.data(), Nx) << std::endl; for (size_t i = 0; i < Nx; ++i) { @@ -615,8 +583,7 @@ TEST_P(BPStepsInSituGlobalArrayParameters, EveryOtherStep) /// Read back data with block selection if (!mpiRank) { - std::cout << "Read step " << stepsRead - << " with Block selection" << std::endl; + std::cout << "Read step " << stepsRead << " with Block selection" << std::endl; } reader.BeginStep(); if (stepsRead % 2 == static_cast(Oddity)) @@ -629,9 +596,8 @@ TEST_P(BPStepsInSituGlobalArrayParameters, EveryOtherStep) var_i32.SetBlockSelection(blockID); DataArray d; reader.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read at step " - << stepsRead << " var-step " << varStepsRead - << " block " << blockID << ": " + std::cout << "Rank " << mpiRank << " read at step " << stepsRead << " var-step " + << varStepsRead << " block " << blockID << ": " << ArrayToString(d.data(), Nx) << std::endl; auto start = var_i32.Start(); auto count = var_i32.Count(); @@ -659,26 +625,17 @@ TEST_P(BPStepsInSituGlobalArrayParameters, EveryOtherStep) INSTANTIATE_TEST_SUITE_P( BPStepsInSituGlobalArray, BPStepsInSituGlobalArrayParameters, - ::testing::Values(std::make_tuple(0, 0, ReadMode::ReadGlobal), - std::make_tuple(0, 0, ReadMode::ReadBlocks), - std::make_tuple(0, 1, ReadMode::ReadGlobal), - std::make_tuple(0, 1, ReadMode::ReadBlocks), - std::make_tuple(1, 0, ReadMode::ReadGlobal), - std::make_tuple(1, 0, ReadMode::ReadBlocks), - std::make_tuple(1, 1, ReadMode::ReadGlobal), - std::make_tuple(1, 1, ReadMode::ReadBlocks), - std::make_tuple(2, 0, ReadMode::ReadGlobal), - std::make_tuple(2, 0, ReadMode::ReadBlocks), - std::make_tuple(2, 1, ReadMode::ReadGlobal), - std::make_tuple(2, 1, ReadMode::ReadBlocks), - std::make_tuple(3, 0, ReadMode::ReadGlobal), - std::make_tuple(3, 0, ReadMode::ReadBlocks), - std::make_tuple(3, 1, ReadMode::ReadGlobal), - std::make_tuple(3, 1, ReadMode::ReadBlocks), - std::make_tuple(4, 0, ReadMode::ReadGlobal), - std::make_tuple(4, 0, ReadMode::ReadBlocks), - std::make_tuple(4, 1, ReadMode::ReadGlobal), - std::make_tuple(4, 1, ReadMode::ReadBlocks))); + ::testing::Values( + std::make_tuple(0, 0, ReadMode::ReadGlobal), std::make_tuple(0, 0, ReadMode::ReadBlocks), + std::make_tuple(0, 1, ReadMode::ReadGlobal), std::make_tuple(0, 1, ReadMode::ReadBlocks), + std::make_tuple(1, 0, ReadMode::ReadGlobal), std::make_tuple(1, 0, ReadMode::ReadBlocks), + std::make_tuple(1, 1, ReadMode::ReadGlobal), std::make_tuple(1, 1, ReadMode::ReadBlocks), + std::make_tuple(2, 0, ReadMode::ReadGlobal), std::make_tuple(2, 0, ReadMode::ReadBlocks), + std::make_tuple(2, 1, ReadMode::ReadGlobal), std::make_tuple(2, 1, ReadMode::ReadBlocks), + std::make_tuple(3, 0, ReadMode::ReadGlobal), std::make_tuple(3, 0, ReadMode::ReadBlocks), + std::make_tuple(3, 1, ReadMode::ReadGlobal), std::make_tuple(3, 1, ReadMode::ReadBlocks), + std::make_tuple(4, 0, ReadMode::ReadGlobal), std::make_tuple(4, 0, ReadMode::ReadBlocks), + std::make_tuple(4, 1, ReadMode::ReadGlobal), std::make_tuple(4, 1, ReadMode::ReadBlocks))); //****************************************************************************** // main //****************************************************************************** diff --git a/testing/adios2/engine/bp/TestBPStepsInSituLocalArray.cpp b/testing/adios2/engine/bp/TestBPStepsInSituLocalArray.cpp index ca7a318749..1dc4ddd859 100644 --- a/testing/adios2/engine/bp/TestBPStepsInSituLocalArray.cpp +++ b/testing/adios2/engine/bp/TestBPStepsInSituLocalArray.cpp @@ -27,8 +27,7 @@ class BPStepsInSituLocalArray : public ::testing::Test protected: BPStepsInSituLocalArray() = default; - const DataArray I32 = { - {512, 513, -510, 515, -508, 517, -506, 519, -504, 521}}; + const DataArray I32 = {{512, 513, -510, 515, -508, 517, -506, 519, -504, 521}}; DataArray GenerateData(const int step, const int rank, const int size) { @@ -94,9 +93,8 @@ std::string ScheduleToString(const std::vector &schedule) return ss.str(); } -class BPStepsInSituLocalArrayReaders -: public BPStepsInSituLocalArray, - public ::testing::WithParamInterface +class BPStepsInSituLocalArrayReaders : public BPStepsInSituLocalArray, + public ::testing::WithParamInterface { protected: const std::vector &GetSchedule() { return Schedules[GetParam()]; }; @@ -133,8 +131,8 @@ TEST_P(BPStepsInSituLocalArrayReaders, EveryStep) #endif if (!mpiRank) { - std::cout << "Test with Schedule " << GetScheduleID() << " " - << ScheduleToString(schedule) << std::endl; + std::cout << "Test with Schedule " << GetScheduleID() << " " << ScheduleToString(schedule) + << std::endl; } // Start writer @@ -177,10 +175,8 @@ TEST_P(BPStepsInSituLocalArrayReaders, EveryStep) // Generate test data for each process uniquely m_TestData.push_back(GenerateData(stepsWritten, mpiRank, mpiSize)); - std::cout << "Rank " << mpiRank << " write step " << stepsWritten - << ": " - << ArrayToString(m_TestData[stepsWritten].data(), Nx) - << std::endl; + std::cout << "Rank " << mpiRank << " write step " << stepsWritten << ": " + << ArrayToString(m_TestData[stepsWritten].data(), Nx) << std::endl; writer.BeginStep(); writer.Put(var_i32, m_TestData[stepsWritten].data()); writer.EndStep(); @@ -191,8 +187,7 @@ TEST_P(BPStepsInSituLocalArrayReaders, EveryStep) /// Read back data with block selection if (!mpiRank) { - std::cout << "Read step " << stepsRead - << " with Block selection" << std::endl; + std::cout << "Read step " << stepsRead << " with Block selection" << std::endl; } reader.BeginStep(); @@ -204,9 +199,8 @@ TEST_P(BPStepsInSituLocalArrayReaders, EveryStep) var_i32.SetBlockSelection(blockID); DataArray d; reader.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << stepsRead - << " block " << blockID << ": " - << ArrayToString(d.data(), Nx) << std::endl; + std::cout << "Rank " << mpiRank << " read step " << stepsRead << " block " << blockID + << ": " << ArrayToString(d.data(), Nx) << std::endl; auto start = var_i32.Start(); auto count = var_i32.Count(); EXPECT_EQ(start.size(), 0); @@ -234,8 +228,8 @@ TEST_P(BPStepsInSituLocalArrayReaders, NewVarPerStep) const std::vector &schedule = GetSchedule(); using namespace std; std::string BaseName = engineName; - const std::string fname_prefix = "BPStepsInSituLocalArray.NewVarPerStep." + - std::to_string(GetScheduleID()); + const std::string fname_prefix = + "BPStepsInSituLocalArray.NewVarPerStep." + std::to_string(GetScheduleID()); int mpiRank = 0, mpiSize = 1; #if ADIOS2_USE_MPI @@ -257,14 +251,12 @@ TEST_P(BPStepsInSituLocalArrayReaders, NewVarPerStep) fname = fname_prefix + BaseName + ".Serial.bp"; #endif - auto lf_VarName = [](int step) -> std::string { - return "i32_" + std::to_string(step); - }; + auto lf_VarName = [](int step) -> std::string { return "i32_" + std::to_string(step); }; if (!mpiRank) { - std::cout << "Test with Schedule " << GetScheduleID() << " " - << ScheduleToString(schedule) << std::endl; + std::cout << "Test with Schedule " << GetScheduleID() << " " << ScheduleToString(schedule) + << std::endl; } // Start writer @@ -305,14 +297,11 @@ TEST_P(BPStepsInSituLocalArrayReaders, NewVarPerStep) } const std::string varName = lf_VarName(stepsWritten); - auto var = - iow.DefineVariable(varName, shape, start, count); + auto var = iow.DefineVariable(varName, shape, start, count); // Generate test data for each process uniquely m_TestData.push_back(GenerateData(stepsWritten, mpiRank, mpiSize)); - std::cout << "Rank " << mpiRank << " write step " << stepsWritten - << " var " << varName << ": " - << ArrayToString(m_TestData[stepsWritten].data(), Nx) - << std::endl; + std::cout << "Rank " << mpiRank << " write step " << stepsWritten << " var " << varName + << ": " << ArrayToString(m_TestData[stepsWritten].data(), Nx) << std::endl; writer.BeginStep(); writer.Put(var, m_TestData[stepsWritten].data()); writer.EndStep(); @@ -323,8 +312,7 @@ TEST_P(BPStepsInSituLocalArrayReaders, NewVarPerStep) /// Read back data with block selection if (!mpiRank) { - std::cout << "Read step " << stepsRead - << " with Block selection" << std::endl; + std::cout << "Read step " << stepsRead << " with Block selection" << std::endl; } reader.BeginStep(); @@ -337,9 +325,8 @@ TEST_P(BPStepsInSituLocalArrayReaders, NewVarPerStep) var.SetBlockSelection(blockID); DataArray d; reader.Get(var, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read step " << stepsRead - << " block " << blockID << ": " - << ArrayToString(d.data(), Nx) << std::endl; + std::cout << "Rank " << mpiRank << " read step " << stepsRead << " block " << blockID + << ": " << ArrayToString(d.data(), Nx) << std::endl; auto start = var.Start(); auto count = var.Count(); EXPECT_EQ(start.size(), 0); @@ -361,8 +348,7 @@ TEST_P(BPStepsInSituLocalArrayReaders, NewVarPerStep) reader.Close(); } -INSTANTIATE_TEST_SUITE_P(BPStepsInSituLocalArray, - BPStepsInSituLocalArrayReaders, +INSTANTIATE_TEST_SUITE_P(BPStepsInSituLocalArray, BPStepsInSituLocalArrayReaders, ::testing::Values(0, 1, 2, 3, 4)); class BPStepsInSituLocalArrayParameters @@ -370,10 +356,7 @@ class BPStepsInSituLocalArrayParameters public ::testing::WithParamInterface> { protected: - const std::vector &GetSchedule() - { - return Schedules[std::get<0>(GetParam())]; - }; + const std::vector &GetSchedule() { return Schedules[std::get<0>(GetParam())]; }; size_t GetOddity() { return std::get<1>(GetParam()); }; size_t GetScheduleID() { return std::get<0>(GetParam()); }; }; @@ -386,9 +369,9 @@ TEST_P(BPStepsInSituLocalArrayParameters, EveryOtherStep) const std::size_t Oddity = GetOddity(); using namespace std; std::string BaseName = engineName; - const std::string fname_prefix = - "BPStepsInSituLocalArray.EveryOtherStep.Schedule" + - std::to_string(GetScheduleID()) + ".Oddity" + std::to_string(Oddity); + const std::string fname_prefix = "BPStepsInSituLocalArray.EveryOtherStep.Schedule" + + std::to_string(GetScheduleID()) + ".Oddity" + + std::to_string(Oddity); int mpiRank = 0, mpiSize = 1; #if ADIOS2_USE_MPI @@ -413,9 +396,8 @@ TEST_P(BPStepsInSituLocalArrayParameters, EveryOtherStep) if (!mpiRank) { - std::cout << "Test with Schedule " << GetScheduleID() << " " - << ScheduleToString(schedule) << " Oddity " << Oddity - << std::endl; + std::cout << "Test with Schedule " << GetScheduleID() << " " << ScheduleToString(schedule) + << " Oddity " << Oddity << std::endl; } // Start writer @@ -463,13 +445,10 @@ TEST_P(BPStepsInSituLocalArrayParameters, EveryOtherStep) writer.Put(var_step, stepsWritten); if (stepsWritten % 2 == static_cast(Oddity)) { - m_TestData.push_back( - GenerateData(stepsWritten, mpiRank, mpiSize)); - std::cout << "Rank " << mpiRank << " at step " << stepsWritten - << " write var-step " << varStepsWritten << ": " - << ArrayToString(m_TestData[varStepsWritten].data(), - Nx) - << std::endl; + m_TestData.push_back(GenerateData(stepsWritten, mpiRank, mpiSize)); + std::cout << "Rank " << mpiRank << " at step " << stepsWritten << " write var-step " + << varStepsWritten << ": " + << ArrayToString(m_TestData[varStepsWritten].data(), Nx) << std::endl; writer.Put(var_i32, m_TestData[varStepsWritten].data()); ++varStepsWritten; } @@ -481,8 +460,7 @@ TEST_P(BPStepsInSituLocalArrayParameters, EveryOtherStep) /// Read back data with block selection if (!mpiRank) { - std::cout << "Read step " << stepsRead - << " with Block selection" << std::endl; + std::cout << "Read step " << stepsRead << " with Block selection" << std::endl; } reader.BeginStep(); if (stepsRead % 2 == static_cast(Oddity)) @@ -495,10 +473,9 @@ TEST_P(BPStepsInSituLocalArrayParameters, EveryOtherStep) var_i32.SetBlockSelection(blockID); DataArray d; reader.Get(var_i32, d.data(), adios2::Mode::Sync); - std::cout << "Rank " << mpiRank << " read at step " << stepsRead - << " var-step " << varStepsRead << " block " - << blockID << ": " << ArrayToString(d.data(), Nx) - << std::endl; + std::cout << "Rank " << mpiRank << " read at step " << stepsRead << " var-step " + << varStepsRead << " block " << blockID << ": " + << ArrayToString(d.data(), Nx) << std::endl; auto start = var_i32.Start(); auto count = var_i32.Count(); EXPECT_EQ(start.size(), 0); @@ -523,13 +500,12 @@ TEST_P(BPStepsInSituLocalArrayParameters, EveryOtherStep) reader.Close(); } -INSTANTIATE_TEST_SUITE_P( - BPStepsInSituLocalArray, BPStepsInSituLocalArrayParameters, - ::testing::Values(std::make_tuple(0, 0), std::make_tuple(0, 1), - std::make_tuple(1, 0), std::make_tuple(1, 1), - std::make_tuple(2, 0), std::make_tuple(2, 1), - std::make_tuple(3, 0), std::make_tuple(3, 1), - std::make_tuple(4, 0), std::make_tuple(4, 1))); +INSTANTIATE_TEST_SUITE_P(BPStepsInSituLocalArray, BPStepsInSituLocalArrayParameters, + ::testing::Values(std::make_tuple(0, 0), std::make_tuple(0, 1), + std::make_tuple(1, 0), std::make_tuple(1, 1), + std::make_tuple(2, 0), std::make_tuple(2, 1), + std::make_tuple(3, 0), std::make_tuple(3, 1), + std::make_tuple(4, 0), std::make_tuple(4, 1))); //****************************************************************************** // main //****************************************************************************** diff --git a/testing/adios2/engine/bp/TestBPTimeAggregation.cpp b/testing/adios2/engine/bp/TestBPTimeAggregation.cpp index 896a28d22d..e567b6ff1f 100644 --- a/testing/adios2/engine/bp/TestBPTimeAggregation.cpp +++ b/testing/adios2/engine/bp/TestBPTimeAggregation.cpp @@ -42,8 +42,7 @@ void TimeAggregation1D8(const std::string flushstepscount) #else adios2::ADIOS adios; #endif - const std::string TestName = - "TimeAggregation1D8 flush every " + flushstepscount + " steps"; + const std::string TestName = "TimeAggregation1D8 flush every " + flushstepscount + " steps"; { adios2::IO io = adios.DeclareIO("TestIO"); @@ -61,30 +60,23 @@ void TimeAggregation1D8(const std::string flushstepscount) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); io.DefineAttribute("TestName", TestName); @@ -110,8 +102,8 @@ void TimeAggregation1D8(const std::string flushstepscount) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -303,8 +295,8 @@ void TimeAggregation1D8(const std::string flushstepscount) var_r64.SetStepSelection({t, 1}); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); bpReader.Get(var_iString, IString, adios2::Mode::Sync); @@ -351,8 +343,7 @@ void TimeAggregation2D4x2(const std::string flushstepscount) { // Each process would write a 2x4 array and all processes would // form a 2D 2 * (numberOfProcess*Nx) matrix where Nx is 4 here - const std::string fname = - "BPTimeAggregation2D2x4_" + flushstepscount + ".bp"; + const std::string fname = "BPTimeAggregation2D2x4_" + flushstepscount + ".bp"; int mpiRank = 0, mpiSize = 1; // Number of rows @@ -376,8 +367,7 @@ void TimeAggregation2D4x2(const std::string flushstepscount) #else adios2::ADIOS adios; #endif - const std::string TestName = - "TimeAggregation2D4x2 flush every " + flushstepscount + " steps"; + const std::string TestName = "TimeAggregation2D4x2 flush every " + flushstepscount + " steps"; { adios2::IO io = adios.DeclareIO("TestIO"); @@ -397,30 +387,23 @@ void TimeAggregation2D4x2(const std::string flushstepscount) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); io.DefineAttribute("TestName", TestName); @@ -446,8 +429,8 @@ void TimeAggregation2D4x2(const std::string flushstepscount) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -464,8 +447,7 @@ void TimeAggregation2D4x2(const std::string flushstepscount) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -660,8 +642,8 @@ void TimeAggregation2D4x2(const std::string flushstepscount) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString, currentTestData.S1); @@ -698,15 +680,9 @@ class BPTestTimeAggregation : public ::testing::TestWithParam virtual void TearDown() {} }; -TEST_P(BPTestTimeAggregation, BPTimeAggregation1D8) -{ - TimeAggregation1D8(GetParam()); -} +TEST_P(BPTestTimeAggregation, BPTimeAggregation1D8) { TimeAggregation1D8(GetParam()); } -TEST_P(BPTestTimeAggregation, BPTimeAggregation2D4x2) -{ - TimeAggregation2D4x2(GetParam()); -} +TEST_P(BPTestTimeAggregation, BPTimeAggregation2D4x2) { TimeAggregation2D4x2(GetParam()); } INSTANTIATE_TEST_SUITE_P(FlushStepsCount, BPTestTimeAggregation, ::testing::Values("1", "2", "3", "6", "8", "10")); diff --git a/testing/adios2/engine/bp/TestBPWriteAggregateRead.cpp b/testing/adios2/engine/bp/TestBPWriteAggregateRead.cpp index 4a6efce879..aba3b56c85 100644 --- a/testing/adios2/engine/bp/TestBPWriteAggregateRead.cpp +++ b/testing/adios2/engine/bp/TestBPWriteAggregateRead.cpp @@ -53,22 +53,15 @@ void WriteAggRead1D8(const std::string substreams) auto var_iString = io.DefineVariable("iString"); auto var_i8 = io.DefineVariable("i8", shape, start, count); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); auto var_u8 = io.DefineVariable("u8", shape, start, count); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); (void)var_iString; (void)var_i8; @@ -110,8 +103,8 @@ void WriteAggRead1D8(const std::string substreams) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -173,8 +166,7 @@ void WriteAggRead1D8(const std::string substreams) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_iString = io.InquireVariable("iString"); EXPECT_TRUE(var_iString); @@ -293,8 +285,8 @@ void WriteAggRead1D8(const std::string substreams) var_r64.SetStepSelection({t, 1}); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); bpReader.Get(var_iString, IString, adios2::Mode::Sync); @@ -379,22 +371,15 @@ void WriteAggRead2D4x2(const std::string substreams) auto var_iString = io.DefineVariable("iString"); auto var_i8 = io.DefineVariable("i8", shape, start, count); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); auto var_u8 = io.DefineVariable("u8", shape, start, count); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); (void)var_iString; (void)var_i8; @@ -428,8 +413,8 @@ void WriteAggRead2D4x2(const std::string substreams) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -446,8 +431,7 @@ void WriteAggRead2D4x2(const std::string substreams) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -490,8 +474,7 @@ void WriteAggRead2D4x2(const std::string substreams) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_iString = io.InquireVariable("iString"); EXPECT_TRUE(var_iString); @@ -633,8 +616,8 @@ void WriteAggRead2D4x2(const std::string substreams) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString, currentTestData.S1); @@ -697,25 +680,17 @@ void WriteAggRead2D2x4(const std::string substreams) static_cast(mpiSize * Nx)}; adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; auto var_i8 = io.DefineVariable("i8", shape, start, count); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); auto var_u8 = io.DefineVariable("u8", shape, start, count); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); (void)var_i8; (void)var_i16; @@ -748,8 +723,8 @@ void WriteAggRead2D2x4(const std::string substreams) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -765,8 +740,7 @@ void WriteAggRead2D2x4(const std::string substreams) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -808,8 +782,7 @@ void WriteAggRead2D2x4(const std::string substreams) { io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); @@ -946,8 +919,8 @@ void WriteAggRead2D2x4(const std::string substreams) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { @@ -982,20 +955,11 @@ class BPWriteAggregateReadTest : public ::testing::TestWithParam virtual void TearDown() {} }; -TEST_P(BPWriteAggregateReadTest, ADIOS2BPWriteAggregateRead1D8) -{ - WriteAggRead1D8(GetParam()); -} +TEST_P(BPWriteAggregateReadTest, ADIOS2BPWriteAggregateRead1D8) { WriteAggRead1D8(GetParam()); } -TEST_P(BPWriteAggregateReadTest, ADIOS2BPWriteAggregateRead2D2x4) -{ - WriteAggRead2D2x4(GetParam()); -} +TEST_P(BPWriteAggregateReadTest, ADIOS2BPWriteAggregateRead2D2x4) { WriteAggRead2D2x4(GetParam()); } -TEST_P(BPWriteAggregateReadTest, ADIOS2BPWriteAggregateRead2D4x2) -{ - WriteAggRead2D4x2(GetParam()); -} +TEST_P(BPWriteAggregateReadTest, ADIOS2BPWriteAggregateRead2D4x2) { WriteAggRead2D4x2(GetParam()); } INSTANTIATE_TEST_SUITE_P(Substreams, BPWriteAggregateReadTest, ::testing::Values("1", "2", "3", "4", "5", "0")); diff --git a/testing/adios2/engine/bp/TestBPWriteAppendReadADIOS2.cpp b/testing/adios2/engine/bp/TestBPWriteAppendReadADIOS2.cpp index a1739f3b9e..d6bf3776fa 100644 --- a/testing/adios2/engine/bp/TestBPWriteAppendReadADIOS2.cpp +++ b/testing/adios2/engine/bp/TestBPWriteAppendReadADIOS2.cpp @@ -55,8 +55,7 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendRead2D2x4) const std::string cr32_Single = std::string("cr32_Single_") + zero; const std::string cr32_Array = std::string("cr32_Array_") + zero; const std::string cr64_Single = std::string("cr64_Single_") + zero; - SmallTestData attributeTestData = - generateNewSmallTestData(m_TestData, 0, 0, 0); + SmallTestData attributeTestData = generateNewSmallTestData(m_TestData, 0, 0, 0); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -93,22 +92,15 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendRead2D2x4) auto var_iString = io.DefineVariable("iString"); auto var_i8 = io.DefineVariable("i8", shape, start, count); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); auto var_u8 = io.DefineVariable("u8", shape, start, count); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); (void)var_iString; (void)var_i8; @@ -127,46 +119,32 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendRead2D2x4) // Declare Single Value Attributes io.DefineAttribute(s1_Single, attributeTestData.S1); - io.DefineAttribute(s1_Array, - attributeTestData.S1array.data(), + io.DefineAttribute(s1_Array, attributeTestData.S1array.data(), attributeTestData.S1array.size()); io.DefineAttribute(i8_Single, attributeTestData.I8.front()); - io.DefineAttribute(i16_Single, - attributeTestData.I16.front()); - io.DefineAttribute(i32_Single, - attributeTestData.I32.front()); + io.DefineAttribute(i16_Single, attributeTestData.I16.front()); + io.DefineAttribute(i32_Single, attributeTestData.I32.front()); io.DefineAttribute(i32_Array, attributeTestData.I32.data(), attributeTestData.I32.size()); - io.DefineAttribute(i64_Single, - attributeTestData.I64.front()); - - io.DefineAttribute(u8_Single, - attributeTestData.U8.front()); - io.DefineAttribute(u16_Single, - attributeTestData.U16.front()); - io.DefineAttribute(u32_Single, - attributeTestData.U32.front()); - io.DefineAttribute(u32_Array, - attributeTestData.U32.data(), + io.DefineAttribute(i64_Single, attributeTestData.I64.front()); + + io.DefineAttribute(u8_Single, attributeTestData.U8.front()); + io.DefineAttribute(u16_Single, attributeTestData.U16.front()); + io.DefineAttribute(u32_Single, attributeTestData.U32.front()); + io.DefineAttribute(u32_Array, attributeTestData.U32.data(), attributeTestData.U32.size()); - io.DefineAttribute(u64_Single, - attributeTestData.U64.front()); + io.DefineAttribute(u64_Single, attributeTestData.U64.front()); - io.DefineAttribute(r32_Single, - attributeTestData.R32.front()); + io.DefineAttribute(r32_Single, attributeTestData.R32.front()); io.DefineAttribute(r32_Array, attributeTestData.R32.data(), attributeTestData.R32.size()); - io.DefineAttribute(r64_Single, - attributeTestData.R64.front()); - - io.DefineAttribute>( - cr32_Single, attributeTestData.CR32.front()); - io.DefineAttribute>( - cr32_Array, attributeTestData.CR32.data(), - attributeTestData.CR32.size()); - io.DefineAttribute>( - cr64_Single, attributeTestData.CR64.front()); + io.DefineAttribute(r64_Single, attributeTestData.R64.front()); + + io.DefineAttribute>(cr32_Single, attributeTestData.CR32.front()); + io.DefineAttribute>(cr32_Array, attributeTestData.CR32.data(), + attributeTestData.CR32.size()); + io.DefineAttribute>(cr64_Single, attributeTestData.CR64.front()); } io.SetEngine(engineName); @@ -177,8 +155,8 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendRead2D2x4) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -195,8 +173,7 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendRead2D2x4) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -244,22 +221,15 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendRead2D2x4) auto var_iString = io.DefineVariable("iString"); auto var_i8 = io.DefineVariable("i8", shape, start, count); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); auto var_u8 = io.DefineVariable("u8", shape, start, count); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); (void)var_iString; (void)var_i8; @@ -278,46 +248,32 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendRead2D2x4) // Declare Single Value Attributes io.DefineAttribute(s1_Single, attributeTestData.S1); - io.DefineAttribute(s1_Array, - attributeTestData.S1array.data(), + io.DefineAttribute(s1_Array, attributeTestData.S1array.data(), attributeTestData.S1array.size()); io.DefineAttribute(i8_Single, attributeTestData.I8.front()); - io.DefineAttribute(i16_Single, - attributeTestData.I16.front()); - io.DefineAttribute(i32_Single, - attributeTestData.I32.front()); + io.DefineAttribute(i16_Single, attributeTestData.I16.front()); + io.DefineAttribute(i32_Single, attributeTestData.I32.front()); io.DefineAttribute(i32_Array, attributeTestData.I32.data(), attributeTestData.I32.size()); - io.DefineAttribute(i64_Single, - attributeTestData.I64.front()); - - io.DefineAttribute(u8_Single, - attributeTestData.U8.front()); - io.DefineAttribute(u16_Single, - attributeTestData.U16.front()); - io.DefineAttribute(u32_Single, - attributeTestData.U32.front()); - io.DefineAttribute(u32_Array, - attributeTestData.U32.data(), + io.DefineAttribute(i64_Single, attributeTestData.I64.front()); + + io.DefineAttribute(u8_Single, attributeTestData.U8.front()); + io.DefineAttribute(u16_Single, attributeTestData.U16.front()); + io.DefineAttribute(u32_Single, attributeTestData.U32.front()); + io.DefineAttribute(u32_Array, attributeTestData.U32.data(), attributeTestData.U32.size()); - io.DefineAttribute(u64_Single, - attributeTestData.U64.front()); + io.DefineAttribute(u64_Single, attributeTestData.U64.front()); - io.DefineAttribute(r32_Single, - attributeTestData.R32.front()); + io.DefineAttribute(r32_Single, attributeTestData.R32.front()); io.DefineAttribute(r32_Array, attributeTestData.R32.data(), attributeTestData.R32.size()); - io.DefineAttribute(r64_Single, - attributeTestData.R64.front()); - - io.DefineAttribute>( - cr32_Single, attributeTestData.CR32.front()); - io.DefineAttribute>( - cr32_Array, attributeTestData.CR32.data(), - attributeTestData.CR32.size()); - io.DefineAttribute>( - cr64_Single, attributeTestData.CR64.front()); + io.DefineAttribute(r64_Single, attributeTestData.R64.front()); + + io.DefineAttribute>(cr32_Single, attributeTestData.CR32.front()); + io.DefineAttribute>(cr32_Array, attributeTestData.CR32.data(), + attributeTestData.CR32.size()); + io.DefineAttribute>(cr64_Single, attributeTestData.CR64.front()); } io.SetEngine(engineName); @@ -329,8 +285,8 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendRead2D2x4) for (size_t step = NSteps; step < 2 * NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -347,8 +303,7 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendRead2D2x4) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -387,8 +342,7 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendRead2D2x4) adios2::IO io = adios.DeclareIO("ReadIO"); io.SetEngine(engineName); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto attr_s1 = io.InquireAttribute(s1_Single); auto attr_s1a = io.InquireAttribute(s1_Array); @@ -444,8 +398,7 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendRead2D2x4) EXPECT_TRUE(attr_i32a); ASSERT_EQ(attr_i32a.Name(), i32_Array); - ASSERT_EQ(attr_i32a.Data().size() == attributeTestData.I32.size(), - true); + ASSERT_EQ(attr_i32a.Data().size() == attributeTestData.I32.size(), true); ASSERT_EQ(attr_i32a.Type(), adios2::GetType()); ASSERT_EQ(attr_i32a.Data()[0], attributeTestData.I32[0]); @@ -475,8 +428,7 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendRead2D2x4) EXPECT_TRUE(attr_u32a); ASSERT_EQ(attr_u32a.Name(), u32_Array); - ASSERT_EQ(attr_u32a.Data().size() == attributeTestData.U32.size(), - true); + ASSERT_EQ(attr_u32a.Data().size() == attributeTestData.U32.size(), true); ASSERT_EQ(attr_u32a.Type(), adios2::GetType()); ASSERT_EQ(attr_u32a.Data()[0], attributeTestData.U32[0]); @@ -494,8 +446,7 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendRead2D2x4) EXPECT_TRUE(attr_r32a); ASSERT_EQ(attr_r32a.Name(), r32_Array); - ASSERT_EQ(attr_r32a.Data().size() == attributeTestData.R32.size(), - true); + ASSERT_EQ(attr_r32a.Data().size() == attributeTestData.R32.size(), true); ASSERT_EQ(attr_r32a.Type(), adios2::GetType()); ASSERT_EQ(attr_r32a.Data()[0], attributeTestData.R32[0]); @@ -513,8 +464,7 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendRead2D2x4) EXPECT_TRUE(attr_cr32a); ASSERT_EQ(attr_cr32a.Name(), cr32_Array); - ASSERT_EQ(attr_cr32a.Data().size() == attributeTestData.CR32.size(), - true); + ASSERT_EQ(attr_cr32a.Data().size() == attributeTestData.CR32.size(), true); ASSERT_EQ(attr_cr32a.Type(), adios2::GetType>()); ASSERT_EQ(attr_cr32a.Data()[0], attributeTestData.CR32[0]); @@ -663,8 +613,8 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendRead2D2x4) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString, currentTestData.S1); @@ -723,8 +673,8 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendReadAggregate) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); bpWriter.BeginStep(); bpWriter.Put(var_i32, currentTestData.I32.data()); bpWriter.EndStep(); @@ -736,8 +686,8 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendReadAggregate) for (size_t step = NSteps; step < 2 * NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); bpWriter.BeginStep(); bpWriter.Put(var_i32, currentTestData.I32.data()); bpWriter.EndStep(); @@ -749,8 +699,7 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendReadAggregate) adios2::IO io = adios.DeclareIO("ReadIO"); io.SetEngine(engineName); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i32 = io.InquireVariable("i32"); EXPECT_TRUE(var_i32); @@ -774,8 +723,8 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendReadAggregate) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { @@ -822,8 +771,8 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendReadVaryingAggregation) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); bpWriter.BeginStep(); bpWriter.Put(var_i32, currentTestData.I32.data()); bpWriter.EndStep(); @@ -836,8 +785,8 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendReadVaryingAggregation) for (size_t step = NSteps; step < 2 * NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); bpWriter.BeginStep(); bpWriter.Put(var_i32, currentTestData.I32.data()); bpWriter.EndStep(); @@ -850,8 +799,8 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendReadVaryingAggregation) for (size_t step = 2 * NSteps; step < 3 * NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); bpWriter.BeginStep(); bpWriter.Put(var_i32, currentTestData.I32.data()); bpWriter.EndStep(); @@ -864,8 +813,7 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendReadVaryingAggregation) adios2::IO io = adios.DeclareIO("ReadIO"); io.SetEngine(engineName); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i32 = io.InquireVariable("i32"); EXPECT_TRUE(var_i32); @@ -890,8 +838,8 @@ TEST_F(BPWriteAppendReadTestADIOS2, ADIOS2BPWriteAppendReadVaryingAggregation) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { diff --git a/testing/adios2/engine/bp/TestBPWriteFlushRead.cpp b/testing/adios2/engine/bp/TestBPWriteFlushRead.cpp index b1976f1a14..e35fbd3adb 100644 --- a/testing/adios2/engine/bp/TestBPWriteFlushRead.cpp +++ b/testing/adios2/engine/bp/TestBPWriteFlushRead.cpp @@ -75,29 +75,19 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2D) const adios2::Dims start{static_cast(Nx1D * mpiRank)}; const adios2::Dims count{Nx1D}; - io1D.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io1D.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io1D.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io1D.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io1D.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io1D.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io1D.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io1D.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } // io2D variables @@ -106,40 +96,28 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2D) const adios2::Dims start{0, static_cast(mpiRank * Nx2D)}; const adios2::Dims count{Ny2D, Nx2D}; - io2D.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io2D.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io2D.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io2D.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io2D.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io2D.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io2D.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io2D.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } - adios2::Engine bpWriter1D = - io1D.Open("Flush1D.bp", adios2::Mode::Write); - adios2::Engine bpWriter2D = - io2D.Open("Flush2D.bp", adios2::Mode::Write); + adios2::Engine bpWriter1D = io1D.Open("Flush1D.bp", adios2::Mode::Write); + adios2::Engine bpWriter2D = io2D.Open("Flush2D.bp", adios2::Mode::Write); for (size_t step = 0; step < NSteps / 2; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter1D.CurrentStep(), step); EXPECT_EQ(bpWriter2D.CurrentStep(), step); @@ -276,8 +254,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2D) unsigned int t = 0; - while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == - adios2::StepStatus::OK) + while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == adios2::StepStatus::OK) { const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); @@ -299,8 +276,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2D) bpReader.EndStep(); - UpdateSmallTestData(m_OriginalData1D, static_cast(t), - mpiRank, mpiSize); + UpdateSmallTestData(m_OriginalData1D, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx1D; ++i) { @@ -439,8 +415,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2D) unsigned int t = 0; - while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == - adios2::StepStatus::OK) + while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == adios2::StepStatus::OK) { const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); @@ -462,8 +437,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2D) bpReader.EndStep(); // Generate test data for each rank uniquely - UpdateSmallTestData(m_OriginalData2D, static_cast(t), - mpiRank, mpiSize); + UpdateSmallTestData(m_OriginalData2D, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx2D * Ny2D; ++i) { @@ -543,29 +517,19 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dstdio) const adios2::Dims start{static_cast(Nx1D * mpiRank)}; const adios2::Dims count{Nx1D}; - io1D.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io1D.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io1D.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io1D.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io1D.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io1D.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io1D.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io1D.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } // io2D variables @@ -574,40 +538,28 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dstdio) const adios2::Dims start{0, static_cast(mpiRank * Nx2D)}; const adios2::Dims count{Ny2D, Nx2D}; - io2D.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io2D.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io2D.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io2D.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io2D.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io2D.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io2D.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io2D.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } - adios2::Engine bpWriter1D = - io1D.Open("Flush1Dstdio.bp", adios2::Mode::Write); - adios2::Engine bpWriter2D = - io2D.Open("Flush2Dstdio.bp", adios2::Mode::Write); + adios2::Engine bpWriter1D = io1D.Open("Flush1Dstdio.bp", adios2::Mode::Write); + adios2::Engine bpWriter2D = io2D.Open("Flush2Dstdio.bp", adios2::Mode::Write); for (size_t step = 0; step < NSteps / 2; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter1D.CurrentStep(), step); EXPECT_EQ(bpWriter2D.CurrentStep(), step); @@ -650,8 +602,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dstdio) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open("Flush1Dstdio.bp", adios2::Mode::Read); + adios2::Engine bpReader = io.Open("Flush1Dstdio.bp", adios2::Mode::Read); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); @@ -745,8 +696,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dstdio) unsigned int t = 0; - while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == - adios2::StepStatus::OK) + while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == adios2::StepStatus::OK) { const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); @@ -768,8 +718,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dstdio) bpReader.EndStep(); - UpdateSmallTestData(m_OriginalData1D, static_cast(t), - mpiRank, mpiSize); + UpdateSmallTestData(m_OriginalData1D, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx1D; ++i) { @@ -805,8 +754,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dstdio) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open("Flush2Dstdio.bp", adios2::Mode::Read); + adios2::Engine bpReader = io.Open("Flush2Dstdio.bp", adios2::Mode::Read); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); @@ -909,8 +857,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dstdio) unsigned int t = 0; - while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == - adios2::StepStatus::OK) + while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == adios2::StepStatus::OK) { const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); @@ -932,8 +879,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dstdio) bpReader.EndStep(); // Generate test data for each rank uniquely - UpdateSmallTestData(m_OriginalData2D, static_cast(t), - mpiRank, mpiSize); + UpdateSmallTestData(m_OriginalData2D, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx2D * Ny2D; ++i) { @@ -1013,29 +959,19 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dfstream) const adios2::Dims start{static_cast(Nx1D * mpiRank)}; const adios2::Dims count{Nx1D}; - io1D.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io1D.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io1D.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io1D.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io1D.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io1D.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io1D.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io1D.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io1D.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io1D.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } // io2D variables @@ -1044,40 +980,28 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dfstream) const adios2::Dims start{0, static_cast(mpiRank * Nx2D)}; const adios2::Dims count{Ny2D, Nx2D}; - io2D.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io2D.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io2D.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io2D.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io2D.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io2D.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io2D.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io2D.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io2D.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io2D.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } - adios2::Engine bpWriter1D = - io1D.Open("Flush1Dfstream.bp", adios2::Mode::Write); - adios2::Engine bpWriter2D = - io2D.Open("Flush2Dfstream.bp", adios2::Mode::Write); + adios2::Engine bpWriter1D = io1D.Open("Flush1Dfstream.bp", adios2::Mode::Write); + adios2::Engine bpWriter2D = io2D.Open("Flush2Dfstream.bp", adios2::Mode::Write); for (size_t step = 0; step < NSteps / 2; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter1D.CurrentStep(), step); EXPECT_EQ(bpWriter2D.CurrentStep(), step); @@ -1120,8 +1044,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dfstream) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open("Flush1Dfstream.bp", adios2::Mode::Read); + adios2::Engine bpReader = io.Open("Flush1Dfstream.bp", adios2::Mode::Read); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); @@ -1215,8 +1138,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dfstream) unsigned int t = 0; - while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == - adios2::StepStatus::OK) + while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == adios2::StepStatus::OK) { const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); @@ -1238,8 +1160,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dfstream) bpReader.EndStep(); - UpdateSmallTestData(m_OriginalData1D, static_cast(t), - mpiRank, mpiSize); + UpdateSmallTestData(m_OriginalData1D, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx1D; ++i) { @@ -1275,8 +1196,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dfstream) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open("Flush2Dfstream.bp", adios2::Mode::Read); + adios2::Engine bpReader = io.Open("Flush2Dfstream.bp", adios2::Mode::Read); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); @@ -1379,8 +1299,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dfstream) unsigned int t = 0; - while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == - adios2::StepStatus::OK) + while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == adios2::StepStatus::OK) { const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); @@ -1402,8 +1321,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dfstream) bpReader.EndStep(); // Generate test data for each rank uniquely - UpdateSmallTestData(m_OriginalData2D, static_cast(t), - mpiRank, mpiSize); + UpdateSmallTestData(m_OriginalData2D, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx2D * Ny2D; ++i) { diff --git a/testing/adios2/engine/bp/TestBPWriteMemorySelectionRead.cpp b/testing/adios2/engine/bp/TestBPWriteMemorySelectionRead.cpp index b9d41be62c..ea52b5753d 100644 --- a/testing/adios2/engine/bp/TestBPWriteMemorySelectionRead.cpp +++ b/testing/adios2/engine/bp/TestBPWriteMemorySelectionRead.cpp @@ -20,8 +20,7 @@ namespace { template -inline void AssignStep1D(const size_t step, std::vector &vector, - const size_t ghostCells = 0) +inline void AssignStep1D(const size_t step, std::vector &vector, const size_t ghostCells = 0) { std::for_each(vector.begin() + ghostCells, vector.end() - ghostCells, [step](T &value) { value = static_cast(step); }); @@ -31,11 +30,10 @@ template <> void AssignStep1D(const size_t step, std::vector> &vector, const size_t ghostCells) { - std::for_each(vector.begin() + ghostCells, vector.end() - ghostCells, - [step](std::complex &value) { - value = std::complex(static_cast(step), - static_cast(step)); - }); + std::for_each( + vector.begin() + ghostCells, vector.end() - ghostCells, [step](std::complex &value) { + value = std::complex(static_cast(step), static_cast(step)); + }); } template <> @@ -50,9 +48,8 @@ void AssignStep1D(const size_t step, std::vector> &vector, } template -inline void AssignStep2D(const size_t step, std::vector &vector, - const size_t Nx, const size_t Ny, - const size_t ghostCellsX, const size_t ghostCellsY) +inline void AssignStep2D(const size_t step, std::vector &vector, const size_t Nx, + const size_t Ny, const size_t ghostCellsX, const size_t ghostCellsY) { for (size_t j = ghostCellsY; j < Ny + ghostCellsY; ++j) { @@ -67,9 +64,8 @@ inline void AssignStep2D(const size_t step, std::vector &vector, } template <> -void AssignStep2D(const size_t step, std::vector> &vector, - const size_t Nx, const size_t Ny, const size_t ghostCellsX, - const size_t ghostCellsY) +void AssignStep2D(const size_t step, std::vector> &vector, const size_t Nx, + const size_t Ny, const size_t ghostCellsX, const size_t ghostCellsY) { for (size_t j = ghostCellsY; j < Ny + ghostCellsY; ++j) { @@ -78,16 +74,14 @@ void AssignStep2D(const size_t step, std::vector> &vector, for (size_t i = ghostCellsX; i < Nx + ghostCellsX; ++i) { const size_t index = indexJ + i; - vector[index] = std::complex(static_cast(step), - static_cast(step)); + vector[index] = std::complex(static_cast(step), static_cast(step)); } } } template <> -void AssignStep2D(const size_t step, std::vector> &vector, - const size_t Nx, const size_t Ny, const size_t ghostCellsX, - const size_t ghostCellsY) +void AssignStep2D(const size_t step, std::vector> &vector, const size_t Nx, + const size_t Ny, const size_t ghostCellsX, const size_t ghostCellsY) { for (size_t j = ghostCellsY; j < Ny + ghostCellsY; ++j) { @@ -96,22 +90,20 @@ void AssignStep2D(const size_t step, std::vector> &vector, for (size_t i = ghostCellsX; i < Nx + ghostCellsX; ++i) { const size_t index = indexJ + i; - vector[index] = std::complex(static_cast(step), - static_cast(step)); + vector[index] = + std::complex(static_cast(step), static_cast(step)); } } } template -inline void AssignStep3D(const size_t step, std::vector &vector, - const size_t Nx, const size_t Ny, const size_t Nz, - const size_t ghostCellsX, const size_t ghostCellsY, - const size_t ghostCellsZ) +inline void AssignStep3D(const size_t step, std::vector &vector, const size_t Nx, + const size_t Ny, const size_t Nz, const size_t ghostCellsX, + const size_t ghostCellsY, const size_t ghostCellsZ) { for (size_t k = ghostCellsZ; k < Nz + ghostCellsZ; ++k) { - const size_t indexK = - k * (Ny + 2 * ghostCellsY) * (Nx + 2 * ghostCellsX); + const size_t indexK = k * (Ny + 2 * ghostCellsY) * (Nx + 2 * ghostCellsX); for (size_t j = ghostCellsY; j < Ny + ghostCellsY; ++j) { @@ -127,15 +119,13 @@ inline void AssignStep3D(const size_t step, std::vector &vector, } template <> -void AssignStep3D(const size_t step, std::vector> &vector, - const size_t Nx, const size_t Ny, const size_t Nz, - const size_t ghostCellsX, const size_t ghostCellsY, - const size_t ghostCellsZ) +void AssignStep3D(const size_t step, std::vector> &vector, const size_t Nx, + const size_t Ny, const size_t Nz, const size_t ghostCellsX, + const size_t ghostCellsY, const size_t ghostCellsZ) { for (size_t k = ghostCellsZ; k < Nz + ghostCellsZ; ++k) { - const size_t indexK = - k * (Ny + 2 * ghostCellsY) * (Nx + 2 * ghostCellsX); + const size_t indexK = k * (Ny + 2 * ghostCellsY) * (Nx + 2 * ghostCellsX); for (size_t j = ghostCellsY; j < Ny + ghostCellsY; ++j) { @@ -144,23 +134,21 @@ void AssignStep3D(const size_t step, std::vector> &vector, for (size_t i = ghostCellsX; i < Nx + ghostCellsX; ++i) { const size_t index = indexK + indexJ + i; - vector[index] = std::complex(static_cast(step), - static_cast(step)); + vector[index] = + std::complex(static_cast(step), static_cast(step)); } } } } template <> -void AssignStep3D(const size_t step, std::vector> &vector, - const size_t Nx, const size_t Ny, const size_t Nz, - const size_t ghostCellsX, const size_t ghostCellsY, - const size_t ghostCellsZ) +void AssignStep3D(const size_t step, std::vector> &vector, const size_t Nx, + const size_t Ny, const size_t Nz, const size_t ghostCellsX, + const size_t ghostCellsY, const size_t ghostCellsZ) { for (size_t k = ghostCellsZ; k < Nz + ghostCellsZ; ++k) { - const size_t indexK = - k * (Ny + 2 * ghostCellsY) * (Nx + 2 * ghostCellsX); + const size_t indexK = k * (Ny + 2 * ghostCellsY) * (Nx + 2 * ghostCellsX); for (size_t j = ghostCellsY; j < Ny + ghostCellsY; ++j) { @@ -169,8 +157,8 @@ void AssignStep3D(const size_t step, std::vector> &vector, for (size_t i = ghostCellsX; i < Nx + ghostCellsX; ++i) { const size_t index = indexK + indexJ + i; - vector[index] = std::complex(static_cast(step), - static_cast(step)); + vector[index] = + std::complex(static_cast(step), static_cast(step)); } } } @@ -217,10 +205,8 @@ void BPSteps1D(const size_t ghostCells) auto var_i64 = io.DefineVariable("i64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); auto var_r64 = io.DefineVariable("r64", shape, start, count); - auto var_cr32 = - io.DefineVariable>("cr32", shape, start, count); - auto var_cr64 = io.DefineVariable>("cr64", shape, - start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); const adios2::Dims memoryStart = {ghostCells}; const adios2::Dims memoryCount = {Nx + 2 * ghostCells}; @@ -240,10 +226,8 @@ void BPSteps1D(const size_t ghostCells) std::vector dataI64(Nx + 2 * ghostCells, -1); std::vector dataR32(Nx + 2 * ghostCells, -1.f); std::vector dataR64(Nx + 2 * ghostCells, -1.); - std::vector> dataCR32(Nx + 2 * ghostCells, - {-1.f, -1.f}); - std::vector> dataCR64(Nx + 2 * ghostCells, - {-1., -1.}); + std::vector> dataCR32(Nx + 2 * ghostCells, {-1.f, -1.f}); + std::vector> dataCR64(Nx + 2 * ghostCells, {-1., -1.}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -363,38 +347,28 @@ void BPSteps1D(const size_t ghostCells) EXPECT_EQ(R32.front(), static_cast(step)); EXPECT_EQ(R64.front(), static_cast(step)); EXPECT_EQ(CR32.front(), - std::complex(static_cast(step), - static_cast(step))); + std::complex(static_cast(step), static_cast(step))); EXPECT_EQ(CR64.front(), - std::complex(static_cast(step), - static_cast(step))); + std::complex(static_cast(step), static_cast(step))); - EXPECT_EQ(std::adjacent_find(I8.begin(), I8.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I8.begin(), I8.end(), std::not_equal_to()), I8.end()); - EXPECT_EQ(std::adjacent_find(I16.begin(), I16.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I16.begin(), I16.end(), std::not_equal_to()), I16.end()); - EXPECT_EQ(std::adjacent_find(I32.begin(), I32.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I32.begin(), I32.end(), std::not_equal_to()), I32.end()); - EXPECT_EQ(std::adjacent_find(I64.begin(), I64.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I64.begin(), I64.end(), std::not_equal_to()), I64.end()); - EXPECT_EQ(std::adjacent_find(R32.begin(), R32.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(R32.begin(), R32.end(), std::not_equal_to()), R32.end()); - EXPECT_EQ(std::adjacent_find(R64.begin(), R64.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(R64.begin(), R64.end(), std::not_equal_to()), R64.end()); - EXPECT_EQ( - std::adjacent_find(CR32.begin(), CR32.end(), - std::not_equal_to>()), - CR32.end()); - EXPECT_EQ( - std::adjacent_find(CR64.begin(), CR64.end(), - std::not_equal_to>()), - CR64.end()); + EXPECT_EQ(std::adjacent_find(CR32.begin(), CR32.end(), + std::not_equal_to>()), + CR32.end()); + EXPECT_EQ(std::adjacent_find(CR64.begin(), CR64.end(), + std::not_equal_to>()), + CR64.end()); } bpReader.Close(); @@ -403,8 +377,7 @@ void BPSteps1D(const size_t ghostCells) void BPSteps2D4x2(const size_t ghostCells) { - const std::string fname("BPSteps2D4x2_" + std::to_string(ghostCells) + - ".bp"); + const std::string fname("BPSteps2D4x2_" + std::to_string(ghostCells) + ".bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -445,14 +418,11 @@ void BPSteps2D4x2(const size_t ghostCells) auto var_i64 = io.DefineVariable("i64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); auto var_r64 = io.DefineVariable("r64", shape, start, count); - auto var_cr32 = - io.DefineVariable>("cr32", shape, start, count); - auto var_cr64 = io.DefineVariable>("cr64", shape, - start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); const adios2::Dims memoryStart = {ghostCellsY, ghostCellsX}; - const adios2::Dims memoryCount = {Ny + 2 * ghostCellsY, - Nx + 2 * ghostCellsX}; + const adios2::Dims memoryCount = {Ny + 2 * ghostCellsY, Nx + 2 * ghostCellsX}; var_i8.SetMemorySelection({memoryStart, memoryCount}); var_i16.SetMemorySelection({memoryStart, memoryCount}); @@ -601,38 +571,28 @@ void BPSteps2D4x2(const size_t ghostCells) EXPECT_EQ(R32.front(), static_cast(step)); EXPECT_EQ(R64.front(), static_cast(step)); EXPECT_EQ(CR32.front(), - std::complex(static_cast(step), - static_cast(step))); + std::complex(static_cast(step), static_cast(step))); EXPECT_EQ(CR64.front(), - std::complex(static_cast(step), - static_cast(step))); + std::complex(static_cast(step), static_cast(step))); - EXPECT_EQ(std::adjacent_find(I8.begin(), I8.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I8.begin(), I8.end(), std::not_equal_to()), I8.end()); - EXPECT_EQ(std::adjacent_find(I16.begin(), I16.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I16.begin(), I16.end(), std::not_equal_to()), I16.end()); - EXPECT_EQ(std::adjacent_find(I32.begin(), I32.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I32.begin(), I32.end(), std::not_equal_to()), I32.end()); - EXPECT_EQ(std::adjacent_find(I64.begin(), I64.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I64.begin(), I64.end(), std::not_equal_to()), I64.end()); - EXPECT_EQ(std::adjacent_find(R32.begin(), R32.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(R32.begin(), R32.end(), std::not_equal_to()), R32.end()); - EXPECT_EQ(std::adjacent_find(R64.begin(), R64.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(R64.begin(), R64.end(), std::not_equal_to()), R64.end()); - EXPECT_EQ( - std::adjacent_find(CR32.begin(), CR32.end(), - std::not_equal_to>()), - CR32.end()); - EXPECT_EQ( - std::adjacent_find(CR64.begin(), CR64.end(), - std::not_equal_to>()), - CR64.end()); + EXPECT_EQ(std::adjacent_find(CR32.begin(), CR32.end(), + std::not_equal_to>()), + CR32.end()); + EXPECT_EQ(std::adjacent_find(CR64.begin(), CR64.end(), + std::not_equal_to>()), + CR64.end()); } bpReader.Close(); @@ -641,8 +601,7 @@ void BPSteps2D4x2(const size_t ghostCells) void BPSteps3D8x2x4(const size_t ghostCells) { - const std::string fname("BPSteps3D8x2x4_" + std::to_string(ghostCells) + - ".bp"); + const std::string fname("BPSteps3D8x2x4_" + std::to_string(ghostCells) + ".bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -685,15 +644,12 @@ void BPSteps3D8x2x4(const size_t ghostCells) auto var_i64 = io.DefineVariable("i64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); auto var_r64 = io.DefineVariable("r64", shape, start, count); - auto var_cr32 = - io.DefineVariable>("cr32", shape, start, count); - auto var_cr64 = io.DefineVariable>("cr64", shape, - start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); - const adios2::Dims memoryStart = {ghostCellsZ, ghostCellsY, - ghostCellsX}; - const adios2::Dims memoryCount = { - Nz + 2 * ghostCellsZ, Ny + 2 * ghostCellsY, Nx + 2 * ghostCellsX}; + const adios2::Dims memoryStart = {ghostCellsZ, ghostCellsY, ghostCellsX}; + const adios2::Dims memoryCount = {Nz + 2 * ghostCellsZ, Ny + 2 * ghostCellsY, + Nx + 2 * ghostCellsX}; var_i8.SetMemorySelection({memoryStart, memoryCount}); var_i16.SetMemorySelection({memoryStart, memoryCount}); @@ -704,8 +660,8 @@ void BPSteps3D8x2x4(const size_t ghostCells) var_cr32.SetMemorySelection({memoryStart, memoryCount}); var_cr64.SetMemorySelection({memoryStart, memoryCount}); - const size_t dataSize = (Nz + 2 * ghostCellsZ) * - (Ny + 2 * ghostCellsY) * (Nx + 2 * ghostCellsX); + const size_t dataSize = + (Nz + 2 * ghostCellsZ) * (Ny + 2 * ghostCellsY) * (Nx + 2 * ghostCellsX); std::vector dataI8(dataSize, -1); std::vector dataI16(dataSize, -1); std::vector dataI32(dataSize, -1); @@ -719,22 +675,14 @@ void BPSteps3D8x2x4(const size_t ghostCells) for (size_t i = 0; i < NSteps; ++i) { - AssignStep3D(i, dataI8, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); - AssignStep3D(i, dataI16, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); - AssignStep3D(i, dataI32, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); - AssignStep3D(i, dataI64, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); - AssignStep3D(i, dataR32, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); - AssignStep3D(i, dataR64, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); - AssignStep3D(i, dataCR32, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); - AssignStep3D(i, dataCR64, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); + AssignStep3D(i, dataI8, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); + AssignStep3D(i, dataI16, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); + AssignStep3D(i, dataI32, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); + AssignStep3D(i, dataI64, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); + AssignStep3D(i, dataR32, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); + AssignStep3D(i, dataR64, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); + AssignStep3D(i, dataCR32, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); + AssignStep3D(i, dataCR64, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); bpWriter.BeginStep(); bpWriter.Put(var_i8, dataI8.data()); @@ -884,38 +832,28 @@ void BPSteps3D8x2x4(const size_t ghostCells) EXPECT_EQ(R32.front(), static_cast(step)); EXPECT_EQ(R64.front(), static_cast(step)); EXPECT_EQ(CR32.front(), - std::complex(static_cast(step), - static_cast(step))); + std::complex(static_cast(step), static_cast(step))); EXPECT_EQ(CR64.front(), - std::complex(static_cast(step), - static_cast(step))); + std::complex(static_cast(step), static_cast(step))); - EXPECT_EQ(std::adjacent_find(I8.begin(), I8.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I8.begin(), I8.end(), std::not_equal_to()), I8.end()); - EXPECT_EQ(std::adjacent_find(I16.begin(), I16.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I16.begin(), I16.end(), std::not_equal_to()), I16.end()); - EXPECT_EQ(std::adjacent_find(I32.begin(), I32.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I32.begin(), I32.end(), std::not_equal_to()), I32.end()); - EXPECT_EQ(std::adjacent_find(I64.begin(), I64.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I64.begin(), I64.end(), std::not_equal_to()), I64.end()); - EXPECT_EQ(std::adjacent_find(R32.begin(), R32.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(R32.begin(), R32.end(), std::not_equal_to()), R32.end()); - EXPECT_EQ(std::adjacent_find(R64.begin(), R64.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(R64.begin(), R64.end(), std::not_equal_to()), R64.end()); - EXPECT_EQ( - std::adjacent_find(CR32.begin(), CR32.end(), - std::not_equal_to>()), - CR32.end()); - EXPECT_EQ( - std::adjacent_find(CR64.begin(), CR64.end(), - std::not_equal_to>()), - CR64.end()); + EXPECT_EQ(std::adjacent_find(CR32.begin(), CR32.end(), + std::not_equal_to>()), + CR32.end()); + EXPECT_EQ(std::adjacent_find(CR64.begin(), CR64.end(), + std::not_equal_to>()), + CR64.end()); } bpReader.Close(); @@ -930,23 +868,13 @@ class BPWriteMemSelReadVector : public ::testing::TestWithParam virtual void TearDown() {} }; -TEST_P(BPWriteMemSelReadVector, BPMemorySelectionSteps1D) -{ - BPSteps1D(GetParam()); -} +TEST_P(BPWriteMemSelReadVector, BPMemorySelectionSteps1D) { BPSteps1D(GetParam()); } -TEST_P(BPWriteMemSelReadVector, BPMemorySelectionSteps2D4x2) -{ - BPSteps2D4x2(GetParam()); -} +TEST_P(BPWriteMemSelReadVector, BPMemorySelectionSteps2D4x2) { BPSteps2D4x2(GetParam()); } -TEST_P(BPWriteMemSelReadVector, BPMemorySelectionSteps3D4x2x8) -{ - BPSteps3D8x2x4(GetParam()); -} +TEST_P(BPWriteMemSelReadVector, BPMemorySelectionSteps3D4x2x8) { BPSteps3D8x2x4(GetParam()); } -INSTANTIATE_TEST_SUITE_P(ghostCells, BPWriteMemSelReadVector, - ::testing::Values(1)); +INSTANTIATE_TEST_SUITE_P(ghostCells, BPWriteMemSelReadVector, ::testing::Values(1)); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/bp/TestBPWriteMultiblockRead.cpp b/testing/adios2/engine/bp/TestBPWriteMultiblockRead.cpp index 5c0c8fbdd3..4edc0b8566 100644 --- a/testing/adios2/engine/bp/TestBPWriteMultiblockRead.cpp +++ b/testing/adios2/engine/bp/TestBPWriteMultiblockRead.cpp @@ -68,30 +68,23 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteMultiblockRead1D8) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -118,8 +111,8 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteMultiblockRead1D8) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -137,8 +130,7 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteMultiblockRead1D8) // Make a 1D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces const adios2::Box sel1({mpiRank * Nx}, {Nx / 2}); - const adios2::Box sel2({mpiRank * Nx + Nx / 2}, - {Nx - Nx / 2}); + const adios2::Box sel2({mpiRank * Nx + Nx / 2}, {Nx - Nx / 2}); bpWriter.BeginStep(); bpWriter.Put(var_iString, currentTestData.S1); @@ -208,8 +200,7 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteMultiblockRead1D8) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_iString = io.InquireVariable("iString"); EXPECT_TRUE(var_iString); @@ -326,8 +317,8 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteMultiblockRead1D8) var_r64.SetStepSelection({t, 1}); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); bpReader.Get(var_iString, IString); @@ -417,30 +408,23 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteMultiblockRead2D2x4) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -460,8 +444,8 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteMultiblockRead2D2x4) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -478,11 +462,11 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteMultiblockRead2D2x4) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - const adios2::Box sel1( - {0, static_cast(mpiRank * Nx)}, {Ny / 2, Nx}); + const adios2::Box sel1({0, static_cast(mpiRank * Nx)}, + {Ny / 2, Nx}); - const adios2::Box sel2( - {Ny / 2, static_cast(mpiRank * Nx)}, {Ny - Ny / 2, Nx}); + const adios2::Box sel2({Ny / 2, static_cast(mpiRank * Nx)}, + {Ny - Ny / 2, Nx}); bpWriter.BeginStep(); bpWriter.Put(var_iString, currentTestData.S1); @@ -552,8 +536,7 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteMultiblockRead2D2x4) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_iString = io.InquireVariable("iString"); EXPECT_TRUE(var_iString); @@ -693,8 +676,8 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteMultiblockRead2D2x4) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString, currentTestData.S1); @@ -762,34 +745,26 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteMultiblockRead2D4x2) static_cast(mpiSize * Nx)}; adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -810,8 +785,8 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteMultiblockRead2D4x2) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -827,11 +802,11 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteMultiblockRead2D4x2) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - const adios2::Box sel1( - {0, static_cast(mpiRank * Nx)}, {Ny / 2, Nx}); + const adios2::Box sel1({0, static_cast(mpiRank * Nx)}, + {Ny / 2, Nx}); - const adios2::Box sel2( - {Ny / 2, static_cast(mpiRank * Nx)}, {Ny - Ny / 2, Nx}); + const adios2::Box sel2({Ny / 2, static_cast(mpiRank * Nx)}, + {Ny - Ny / 2, Nx}); bpWriter.BeginStep(); @@ -900,8 +875,7 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteMultiblockRead2D4x2) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); @@ -1036,8 +1010,8 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteMultiblockRead2D4x2) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { @@ -1101,30 +1075,23 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteRead1D8ZeroBlock) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -1151,8 +1118,8 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteRead1D8ZeroBlock) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -1169,9 +1136,8 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteRead1D8ZeroBlock) // Make a 1D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - const adios2::Box sel2( - {static_cast(mpiRank * Nx + Nx / 2)}, - {Nx - Nx / 2}); + const adios2::Box sel2({static_cast(mpiRank * Nx + Nx / 2)}, + {Nx - Nx / 2}); const adios2::Box selNull({mpiRank * Nx}, {0}); @@ -1248,8 +1214,7 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteRead1D8ZeroBlock) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_iString = io.InquireVariable("iString"); EXPECT_TRUE(var_iString); @@ -1366,8 +1331,8 @@ TEST_F(BPWriteMultiblockReadTest, ADIOS2BPWriteRead1D8ZeroBlock) var_r64.SetStepSelection({t, 1}); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); bpReader.Get(var_iString, IString); diff --git a/testing/adios2/engine/bp/TestBPWriteNull.cpp b/testing/adios2/engine/bp/TestBPWriteNull.cpp index ab2b0da70d..43f16a59ac 100644 --- a/testing/adios2/engine/bp/TestBPWriteNull.cpp +++ b/testing/adios2/engine/bp/TestBPWriteNull.cpp @@ -75,36 +75,27 @@ TEST_F(BPWriteNullTest, BPWrite1D1x8) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -113,8 +104,8 @@ TEST_F(BPWriteNullTest, BPWrite1D1x8) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -229,36 +220,27 @@ TEST_F(BPWriteNullTest, BPWrite2D2x4) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -267,8 +249,8 @@ TEST_F(BPWriteNullTest, BPWrite2D2x4) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -287,8 +269,7 @@ TEST_F(BPWriteNullTest, BPWrite2D2x4) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -375,40 +356,30 @@ TEST_F(BPWriteNullTest, BPWrite2D4x2) static_cast(mpiSize * Nx)}; adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -417,8 +388,8 @@ TEST_F(BPWriteNullTest, BPWrite2D4x2) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -436,8 +407,7 @@ TEST_F(BPWriteNullTest, BPWrite2D4x2) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -519,36 +489,27 @@ TEST_F(BPWriteNullTest, BPWrite2D4x2_MultiSteps) adios2::Dims count{Ny, Nx}; auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -557,8 +518,8 @@ TEST_F(BPWriteNullTest, BPWrite2D4x2_MultiSteps) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -576,8 +537,7 @@ TEST_F(BPWriteNullTest, BPWrite2D4x2_MultiSteps) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); diff --git a/testing/adios2/engine/bp/TestBPWriteProfilingJSON.cpp b/testing/adios2/engine/bp/TestBPWriteProfilingJSON.cpp index 386b60823e..1c2ef91ee3 100644 --- a/testing/adios2/engine/bp/TestBPWriteProfilingJSON.cpp +++ b/testing/adios2/engine/bp/TestBPWriteProfilingJSON.cpp @@ -74,22 +74,15 @@ TEST_F(BPWriteProfilingJSONTest, DISABLED_ADIOS2BPWriteProfilingJSON) adios2::Dims start{static_cast(Nx * mpiRank)}; adios2::Dims count{static_cast(Nx)}; auto var_i8 = io.DefineVariable("i8", shape, start, count); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); auto var_u8 = io.DefineVariable("u8", shape, start, count); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); } if (!engineName.empty()) @@ -175,12 +168,10 @@ TEST_F(BPWriteProfilingJSONTest, DISABLED_ADIOS2BPWriteProfilingJSON) ASSERT_EQ(threads, 2); // check bytes - const unsigned long int bytes = - profilingJSON[mpiRank].value("bytes", 0UL); + const unsigned long int bytes = profilingJSON[mpiRank].value("bytes", 0UL); ASSERT_EQ(bytes, 6536); - const auto transportType = - profilingJSON[mpiRank]["transport_0"].value("type", "0"); + const auto transportType = profilingJSON[mpiRank]["transport_0"].value("type", "0"); ASSERT_EQ(transportType, "File_POSIX"); } } @@ -220,22 +211,15 @@ TEST_F(BPWriteProfilingJSONTest, ADIOS2BPWriteProfilingJSON_Off) adios2::Dims start{static_cast(Nx * mpiRank)}; adios2::Dims count{static_cast(Nx)}; auto var_i8 = io.DefineVariable("i8", shape, start, count); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); auto var_u8 = io.DefineVariable("u8", shape, start, count); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); } if (!engineName.empty()) diff --git a/testing/adios2/engine/bp/TestBPWriteReadADIOS2.cpp b/testing/adios2/engine/bp/TestBPWriteReadADIOS2.cpp index f6c12c718f..ef44278fdb 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadADIOS2.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadADIOS2.cpp @@ -101,30 +101,23 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead1D8) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -157,8 +150,8 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead1D8) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope // auto var_bool = io.InquireVariable("bool"); @@ -231,8 +224,7 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead1D8) io.SetParameters(engineParameters); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); EXPECT_EQ(bpReader.Steps(), NSteps); @@ -371,8 +363,8 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead1D8) var_r64.SetStepSelection({t, 1}); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); bpReader.Get(var_char, CHAR.data()); bpReader.Get(var_iString, IString); @@ -466,30 +458,23 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D2x4) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -513,8 +498,8 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D2x4) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -531,8 +516,7 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D2x4) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -579,8 +563,7 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D2x4) io.SetParameters(engineParameters); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); EXPECT_EQ(bpReader.Steps(), NSteps); auto var_iString = io.InquireVariable("iString"); @@ -721,8 +704,8 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D2x4) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString, currentTestData.S1); @@ -790,34 +773,26 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D4x2) static_cast(mpiSize * Nx)}; adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -842,8 +817,8 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D4x2) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -859,8 +834,7 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D4x2) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -905,8 +879,7 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D4x2) io.SetParameters(engineParameters); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); EXPECT_EQ(bpReader.Steps(), NSteps); @@ -1043,8 +1016,8 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D4x2) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { @@ -1104,11 +1077,9 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead10D2x2) // Declare 10D variables { - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_c64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_c64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_c64); } @@ -1138,11 +1109,10 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead10D2x2) v = d; d += 0.0001; }); - std::for_each(CR64w.begin(), CR64w.end(), - [&](std::complex &v) { - v.real(d); - v.imag(d); - }); + std::for_each(CR64w.begin(), CR64w.end(), [&](std::complex &v) { + v.real(d); + v.imag(d); + }); // Retrieve the variables that previously went out of scope auto var_r64 = io.InquireVariable("r64"); @@ -1179,8 +1149,7 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead10D2x2) io.SetParameters(engineParameters); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); EXPECT_EQ(bpReader.Steps(), NSteps); @@ -1235,11 +1204,10 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead10D2x2) v = d; d += 0.0001; }); - std::for_each(CR64w.begin(), CR64w.end(), - [&](std::complex &v) { - v.real(d); - v.imag(d); - }); + std::for_each(CR64w.begin(), CR64w.end(), [&](std::complex &v) { + v.real(d); + v.imag(d); + }); for (size_t i = 0; i < 512; ++i) { @@ -1295,30 +1263,23 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) adios2::Dims count{Ny, Nx}; auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -1343,8 +1304,8 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -1360,8 +1321,7 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -1406,8 +1366,7 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) io.SetParameters(engineParameters); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); EXPECT_EQ(bpReader.Steps(), NSteps); @@ -1544,8 +1503,8 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) for (size_t t = tInitial; t < NSteps; ++t) { // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { @@ -1611,30 +1570,23 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D4x2_MultiStepsOverflow) adios2::Dims count{Ny, Nx}; auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -1659,8 +1611,8 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D4x2_MultiStepsOverflow) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -1676,8 +1628,7 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D4x2_MultiStepsOverflow) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -1722,8 +1673,7 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteRead2D4x2_MultiStepsOverflow) io.SetParameters(engineParameters); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i8 = io.InquireVariable("i8"); auto var_i16 = io.InquireVariable("i16"); @@ -1827,14 +1777,12 @@ TEST_F(BPWriteReadTestADIOS2, OpenEngineTwice) adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); - EXPECT_THROW(io.Open(fname, adios2::Mode::Write), - std::invalid_argument); + EXPECT_THROW(io.Open(fname, adios2::Mode::Write), std::invalid_argument); bpWriter.Close(); EXPECT_NO_THROW(io.Open(fname, adios2::Mode::Write)); - EXPECT_THROW(io.Open(fname, adios2::Mode::ReadRandomAccess), - std::invalid_argument); + EXPECT_THROW(io.Open(fname, adios2::Mode::ReadRandomAccess), std::invalid_argument); } } @@ -1872,9 +1820,8 @@ TEST_F(BPWriteReadTestADIOS2, ReadStartCount) io.SetParameters(engineParameters); } - io.DefineVariable( - "range", {static_cast(Nx * mpiSize)}, - {static_cast(Nx * mpiRank)}, {Nx}); + io.DefineVariable("range", {static_cast(Nx * mpiSize)}, + {static_cast(Nx * mpiRank)}, {Nx}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -1893,10 +1840,8 @@ TEST_F(BPWriteReadTestADIOS2, ReadStartCount) io.SetParameters(engineParameters); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); - adios2::Variable varRange = - io.InquireVariable("range"); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Variable varRange = io.InquireVariable("range"); const std::size_t gNx = static_cast(Nx * mpiSize); std::vector globalData(gNx); @@ -1983,8 +1928,8 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteReadEmptyProcess) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); bpWriter.BeginStep(); if (!mpiRank) @@ -2031,8 +1976,8 @@ TEST_F(BPWriteReadTestADIOS2, ADIOS2BPWriteReadEmptyProcess) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank + 1, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank + 1, mpiSize); bpReader.BeginStep(); @@ -2112,9 +2057,8 @@ TEST_F(BPWriteReadTestADIOS2, GetDeferredInClose) io.SetParameters(engineParameters); } - io.DefineVariable( - "range", {static_cast(Nx * mpiSize)}, - {static_cast(Nx * mpiRank)}, {Nx}); + io.DefineVariable("range", {static_cast(Nx * mpiSize)}, + {static_cast(Nx * mpiRank)}, {Nx}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -2133,10 +2077,8 @@ TEST_F(BPWriteReadTestADIOS2, GetDeferredInClose) io.SetParameters(engineParameters); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); - adios2::Variable varRange = - io.InquireVariable("range"); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Variable varRange = io.InquireVariable("range"); std::vector readData(Nx); varRange.SetSelection({{static_cast(Nx * mpiRank)}, {Nx}}); @@ -2183,9 +2125,8 @@ TEST_F(BPWriteReadTestADIOS2, GetDeferredInEndStep) io.SetParameters(engineParameters); } - io.DefineVariable( - "range", {static_cast(Nx * mpiSize)}, - {static_cast(Nx * mpiRank)}, {Nx}); + io.DefineVariable("range", {static_cast(Nx * mpiSize)}, + {static_cast(Nx * mpiRank)}, {Nx}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -2206,8 +2147,7 @@ TEST_F(BPWriteReadTestADIOS2, GetDeferredInEndStep) adios2::Engine bpReader = io.Open(fname, adios2::Mode::Read); bpReader.BeginStep(); - adios2::Variable varRange = - io.InquireVariable("range"); + adios2::Variable varRange = io.InquireVariable("range"); std::vector readData(Nx); varRange.SetSelection({{static_cast(Nx * mpiRank)}, {Nx}}); @@ -2254,9 +2194,8 @@ TEST_F(BPWriteReadTestADIOS2, GetDeferredWithoutEndStep) io.SetParameters(engineParameters); } - io.DefineVariable( - "range", {static_cast(Nx * mpiSize)}, - {static_cast(Nx * mpiRank)}, {Nx}); + io.DefineVariable("range", {static_cast(Nx * mpiSize)}, + {static_cast(Nx * mpiRank)}, {Nx}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -2277,8 +2216,7 @@ TEST_F(BPWriteReadTestADIOS2, GetDeferredWithoutEndStep) adios2::Engine bpReader = io.Open(fname, adios2::Mode::Read); bpReader.BeginStep(); - adios2::Variable varRange = - io.InquireVariable("range"); + adios2::Variable varRange = io.InquireVariable("range"); std::vector readData(Nx); varRange.SetSelection({{static_cast(Nx * mpiRank)}, {Nx}}); diff --git a/testing/adios2/engine/bp/TestBPWriteReadADIOS2fstream.cpp b/testing/adios2/engine/bp/TestBPWriteReadADIOS2fstream.cpp index d380f09c70..9eaab05c5a 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadADIOS2fstream.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadADIOS2fstream.cpp @@ -75,36 +75,27 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead1D8) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -113,8 +104,8 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead1D8) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -183,8 +174,7 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead1D8) } io.AddTransport("file", {{"Library", "fstream"}}); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_iString = io.InquireVariable("iString"); EXPECT_TRUE(var_iString); @@ -321,8 +311,8 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead1D8) var_cr64.SetStepSelection({t, 1}); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); bpReader.Get("iString", IString); @@ -424,36 +414,27 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D2x4) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -462,8 +443,8 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D2x4) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -482,8 +463,7 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D2x4) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -530,8 +510,7 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D2x4) } io.AddTransport("file", {{"Library", "fstream"}}); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_iString = io.InquireVariable("iString"); EXPECT_TRUE(var_iString); @@ -695,8 +674,8 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D2x4) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString, currentTestData.S1); @@ -771,40 +750,30 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D4x2) static_cast(mpiSize * Nx)}; adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -813,8 +782,8 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D4x2) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -832,8 +801,7 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D4x2) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -878,8 +846,7 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D4x2) } io.AddTransport("file", {{"Library", "fstream"}}); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); @@ -1039,8 +1006,8 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D4x2) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { @@ -1070,8 +1037,7 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) { // Each process would write a 4x2 array and all processes would // form a 2D 4 * (NumberOfProcess * Nx) matrix where Nx is 2 here - const std::string fname( - "ADIOS2BPWriteRead2D4x2Test_ReadMultiStepsfstream.bp"); + const std::string fname("ADIOS2BPWriteRead2D4x2Test_ReadMultiStepsfstream.bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -1112,36 +1078,27 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) adios2::Dims count{Ny, Nx}; auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -1150,8 +1107,8 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -1169,8 +1126,7 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -1215,8 +1171,7 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) } io.AddTransport("file", {{"Library", "fstream"}}); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); @@ -1376,8 +1331,8 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) for (size_t t = tInitial; t < NSteps; ++t) { // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { @@ -1450,30 +1405,23 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D4x2_MultiStepsOverflow) adios2::Dims count{Ny, Nx}; auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -1482,8 +1430,8 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D4x2_MultiStepsOverflow) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -1499,8 +1447,7 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D4x2_MultiStepsOverflow) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -1541,8 +1488,7 @@ TEST_F(BPWriteReadTestADIOS2fstream, ADIOS2BPWriteRead2D4x2_MultiStepsOverflow) } io.AddTransport("file", {{"Library", "fstream"}}); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i8 = io.InquireVariable("i8"); auto var_i16 = io.InquireVariable("i16"); @@ -1637,14 +1583,12 @@ TEST_F(BPWriteReadTestADIOS2fstream, OpenEngineTwice) adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); - EXPECT_THROW(io.Open(fname, adios2::Mode::Write), - std::invalid_argument); + EXPECT_THROW(io.Open(fname, adios2::Mode::Write), std::invalid_argument); bpWriter.Close(); EXPECT_NO_THROW(io.Open(fname, adios2::Mode::Write)); - EXPECT_THROW(io.Open(fname, adios2::Mode::ReadRandomAccess), - std::invalid_argument); + EXPECT_THROW(io.Open(fname, adios2::Mode::ReadRandomAccess), std::invalid_argument); } } diff --git a/testing/adios2/engine/bp/TestBPWriteReadADIOS2stdio.cpp b/testing/adios2/engine/bp/TestBPWriteReadADIOS2stdio.cpp index 4ad4509c1a..af8b80c411 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadADIOS2stdio.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadADIOS2stdio.cpp @@ -74,36 +74,27 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead1D8) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -112,8 +103,8 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead1D8) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -182,8 +173,7 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead1D8) } io.AddTransport("file", {{"Library", "stdio"}}); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_iString = io.InquireVariable("iString"); EXPECT_TRUE(var_iString); @@ -320,8 +310,8 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead1D8) var_cr64.SetStepSelection({t, 1}); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); bpReader.Get(var_iString, IString); @@ -423,36 +413,27 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D2x4) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -461,8 +442,8 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D2x4) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -481,8 +462,7 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D2x4) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -529,8 +509,7 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D2x4) } io.AddTransport("file", {{"Library", "stdio"}}); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_iString = io.InquireVariable("iString"); EXPECT_TRUE(var_iString); @@ -694,8 +673,8 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D2x4) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString, currentTestData.S1); @@ -770,40 +749,30 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D4x2) static_cast(mpiSize * Nx)}; adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -812,8 +781,8 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D4x2) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -831,8 +800,7 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D4x2) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -877,8 +845,7 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D4x2) } io.AddTransport("file", {{"Library", "stdio"}}); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); @@ -1038,8 +1005,8 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D4x2) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { @@ -1069,8 +1036,7 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) { // Each process would write a 4x2 array and all processes would // form a 2D 4 * (NumberOfProcess * Nx) matrix where Nx is 2 here - const std::string fname( - "ADIOS2BPWriteRead2D4x2Test_ReadMultiStepsstdio.bp"); + const std::string fname("ADIOS2BPWriteRead2D4x2Test_ReadMultiStepsstdio.bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -1111,36 +1077,27 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) adios2::Dims count{Ny, Nx}; auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -1149,8 +1106,8 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -1168,8 +1125,7 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -1214,8 +1170,7 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) } io.AddTransport("file", {{"Library", "stdio"}}); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); @@ -1375,8 +1330,8 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D4x2_ReadMultiSteps) for (size_t t = tInitial; t < NSteps; ++t) { // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { @@ -1449,30 +1404,23 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D4x2_MultiStepsOverflow) adios2::Dims count{Ny, Nx}; auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -1481,8 +1429,8 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D4x2_MultiStepsOverflow) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -1498,8 +1446,7 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D4x2_MultiStepsOverflow) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -1540,8 +1487,7 @@ TEST_F(BPWriteReadTestADIOS2stdio, ADIOS2BPWriteRead2D4x2_MultiStepsOverflow) } io.AddTransport("file", {{"Library", "stdio"}}); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i8 = io.InquireVariable("i8"); auto var_i16 = io.InquireVariable("i16"); @@ -1636,14 +1582,12 @@ TEST_F(BPWriteReadTestADIOS2stdio, OpenEngineTwice) adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); - EXPECT_THROW(io.Open(fname, adios2::Mode::Write), - std::invalid_argument); + EXPECT_THROW(io.Open(fname, adios2::Mode::Write), std::invalid_argument); bpWriter.Close(); EXPECT_NO_THROW(io.Open(fname, adios2::Mode::Write)); - EXPECT_THROW(io.Open(fname, adios2::Mode::ReadRandomAccess), - std::invalid_argument); + EXPECT_THROW(io.Open(fname, adios2::Mode::ReadRandomAccess), std::invalid_argument); } } diff --git a/testing/adios2/engine/bp/TestBPWriteReadAsStreamADIOS2.cpp b/testing/adios2/engine/bp/TestBPWriteReadAsStreamADIOS2.cpp index ac1663ed6b..2089eff466 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadAsStreamADIOS2.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadAsStreamADIOS2.cpp @@ -62,31 +62,21 @@ TEST_F(BPWriteReadAsStreamTestADIOS2, ADIOS2BPWriteRead1D8) io.DefineVariable("iString"); - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -108,8 +98,8 @@ TEST_F(BPWriteReadAsStreamTestADIOS2, ADIOS2BPWriteRead1D8) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -141,10 +131,8 @@ TEST_F(BPWriteReadAsStreamTestADIOS2, ADIOS2BPWriteRead1D8) bpWriter.Put("r64", currentTestData.R64.data()); } - bpWriter.Put>("cr32", - currentTestData.CR32.data()); - bpWriter.Put>("cr64", - currentTestData.CR64.data()); + bpWriter.Put>("cr32", currentTestData.CR32.data()); + bpWriter.Put>("cr64", currentTestData.CR64.data()); bpWriter.EndStep(); } @@ -232,16 +220,13 @@ TEST_F(BPWriteReadAsStreamTestADIOS2, ADIOS2BPWriteRead1D8) ASSERT_EQ(var_i8.Shape()[0], static_cast(mpiSize * Nx)); ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i16.Shape()[0], - static_cast(mpiSize * Nx)); + ASSERT_EQ(var_i16.Shape()[0], static_cast(mpiSize * Nx)); ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i32.Shape()[0], - static_cast(mpiSize * Nx)); + ASSERT_EQ(var_i32.Shape()[0], static_cast(mpiSize * Nx)); ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i64.Shape()[0], - static_cast(mpiSize * Nx)); + ASSERT_EQ(var_i64.Shape()[0], static_cast(mpiSize * Nx)); var_i8.SetSelection(sel); var_i16.SetSelection(sel); @@ -433,29 +418,19 @@ TEST_F(BPWriteReadAsStreamTestADIOS2, ADIOS2BPWriteRead2D2x4) const adios2::Dims start{0, static_cast(mpiRank * Nx)}; const adios2::Dims count{Ny, Nx}; - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } if (!engineName.empty()) @@ -473,8 +448,8 @@ TEST_F(BPWriteReadAsStreamTestADIOS2, ADIOS2BPWriteRead2D2x4) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -683,32 +658,21 @@ TEST_F(BPWriteReadAsStreamTestADIOS2, ADIOS2BPWriteRead2D4x2) static_cast(mpiSize * Nx)}; adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } if (!engineName.empty()) @@ -727,8 +691,8 @@ TEST_F(BPWriteReadAsStreamTestADIOS2, ADIOS2BPWriteRead2D4x2) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -941,15 +905,14 @@ TEST_F(BPWriteReadAsStreamTestADIOS2, ReaderWriterDefineVariable) io.SetEngine(engineName); } - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); adios2::Engine bpWriter = io.Open(fnameFloat, adios2::Mode::Write); for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); bpWriter.BeginStep(); bpWriter.Put("r32", currentTestData.R32.data()); bpWriter.EndStep(); @@ -978,13 +941,13 @@ TEST_F(BPWriteReadAsStreamTestADIOS2, ReaderWriterDefineVariable) if (step == 0) { - adios2::Variable varR64 = io.DefineVariable( - "r64", shape, start, count, adios2::ConstantDims); + adios2::Variable varR64 = + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); EXPECT_TRUE(varR64); } - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); writer.BeginStep(); writer.Put("r32", currentTestData.R32.data()); writer.Put("r64", currentTestData.R64.data()); diff --git a/testing/adios2/engine/bp/TestBPWriteReadAsStreamADIOS2_Threads.cpp b/testing/adios2/engine/bp/TestBPWriteReadAsStreamADIOS2_Threads.cpp index d6ce8e52ca..10f5b00c27 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadAsStreamADIOS2_Threads.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadAsStreamADIOS2_Threads.cpp @@ -64,29 +64,19 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead1D8) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } if (!engineName.empty()) @@ -105,8 +95,8 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead1D8) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -311,29 +301,19 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead2D2x4) const adios2::Dims start{0, static_cast(mpiRank * Nx)}; const adios2::Dims count{Ny, Nx}; - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } if (!engineName.empty()) @@ -352,8 +332,8 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead2D2x4) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -567,32 +547,21 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead2D4x2) static_cast(mpiSize * Nx)}; adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } if (!engineName.empty()) @@ -612,8 +581,8 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead2D4x2) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -787,13 +756,11 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead2D4x2) } } -TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, - ADIOS2BPWriteRead1D8MissingPerformGets) +TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead1D8MissingPerformGets) { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname( - "ADIOS2BPWriteReadAsStream1D8MissingPerformGetsTest.bp"); + const std::string fname("ADIOS2BPWriteReadAsStream1D8MissingPerformGetsTest.bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -824,29 +791,19 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } if (!engineName.empty()) @@ -871,8 +828,8 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -902,8 +859,7 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, io.SetParameter("Threads", "2"); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); @@ -1050,13 +1006,11 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, // 2D 2x4 test data //****************************************************************************** -TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, - ADIOS2BPWriteRead2D2x4MissingPerformGets) +TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead2D2x4MissingPerformGets) { // Each process would write a 2x4 array and all processes would // form a 2D 2 * (numberOfProcess*Nx) matrix where Nx is 4 here - const std::string fname( - "ADIOS2BPWriteReadAsStream2D2x4MissingPerformGetsTest.bp"); + const std::string fname("ADIOS2BPWriteReadAsStream2D2x4MissingPerformGetsTest.bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -1090,29 +1044,19 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, const adios2::Dims start{0, static_cast(mpiRank * Nx)}; const adios2::Dims count{Ny, Nx}; - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } if (!engineName.empty()) @@ -1131,8 +1075,8 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -1161,8 +1105,7 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, } io.SetParameter("Threads", "2"); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); @@ -1317,13 +1260,11 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, // 2D 4x2 test data //****************************************************************************** -TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, - ADIOS2BPWriteRead2D4x2MissingPerformGets) +TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead2D4x2MissingPerformGets) { // Each process would write a 4x2 array and all processes would // form a 2D 4 * (NumberOfProcess * Nx) matrix where Nx is 2 here - const std::string fname( - "ADIOS2BPWriteReadAsStream2D4x2MissingPerformGetsTest.bp"); + const std::string fname("ADIOS2BPWriteReadAsStream2D4x2MissingPerformGetsTest.bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -1356,32 +1297,21 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, static_cast(mpiSize * Nx)}; adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } if (!engineName.empty()) @@ -1401,8 +1331,8 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -1431,8 +1361,7 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, } io.SetParameter("Threads", "2"); - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); diff --git a/testing/adios2/engine/bp/TestBPWriteReadAttributes.cpp b/testing/adios2/engine/bp/TestBPWriteReadAttributes.cpp index feaa5bb26b..5195fdb902 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadAttributes.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadAttributes.cpp @@ -28,8 +28,8 @@ class BPWriteReadAttributes : public ::testing::Test // ADIOS2 write, read for single value attributes TEST_F(BPWriteReadAttributes, WriteReadSingleTypes) { - const std::string fName = "foo" + std::string(&adios2::PathSeparator, 1) + - "WriteAttributeReadSingleTypes.bp"; + const std::string fName = + "foo" + std::string(&adios2::PathSeparator, 1) + "WriteAttributeReadSingleTypes.bp"; const std::string zero = std::to_string(0); const std::string s1_Single = std::string("s1_Single_") + zero; @@ -51,8 +51,7 @@ TEST_F(BPWriteReadAttributes, WriteReadSingleTypes) // When collective meta generation has landed, use // generateNewSmallTestData(m_TestData, 0, mpiRank, mpiSize); // Generate current testing data - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, 0, 0, 0); + SmallTestData currentTestData = generateNewSmallTestData(m_TestData, 0, 0, 0); // Write test data using BP #if ADIOS2_USE_MPI @@ -65,8 +64,7 @@ TEST_F(BPWriteReadAttributes, WriteReadSingleTypes) // Declare Single Value Attributes io.DefineAttribute(s1_Single, currentTestData.S1); - io.DefineAttribute(s1_Array, - currentTestData.S1array.data(), + io.DefineAttribute(s1_Array, currentTestData.S1array.data(), currentTestData.S1array.size()); io.DefineAttribute(i8_Single, currentTestData.I8.front()); @@ -81,13 +79,10 @@ TEST_F(BPWriteReadAttributes, WriteReadSingleTypes) io.DefineAttribute(r32_Single, currentTestData.R32.front()); io.DefineAttribute(r64_Single, currentTestData.R64.front()); - io.DefineAttribute(r128_Single, - currentTestData.R128.front()); + io.DefineAttribute(r128_Single, currentTestData.R128.front()); - io.DefineAttribute>(cr32_Single, - currentTestData.CR32.front()); - io.DefineAttribute>(cr64_Single, - currentTestData.CR64.front()); + io.DefineAttribute>(cr32_Single, currentTestData.CR32.front()); + io.DefineAttribute>(cr64_Single, currentTestData.CR64.front()); if (!engineName.empty()) { @@ -114,8 +109,7 @@ TEST_F(BPWriteReadAttributes, WriteReadSingleTypes) ioRead.SetEngine(engineName); } - adios2::Engine bpRead = - ioRead.Open(fName, adios2::Mode::ReadRandomAccess); + adios2::Engine bpRead = ioRead.Open(fName, adios2::Mode::ReadRandomAccess); auto attr_s1 = ioRead.InquireAttribute(s1_Single); auto attr_s1a = ioRead.InquireAttribute(s1_Array); @@ -133,10 +127,8 @@ TEST_F(BPWriteReadAttributes, WriteReadSingleTypes) auto attr_r64 = ioRead.InquireAttribute(r64_Single); auto attr_r128 = ioRead.InquireAttribute(r128_Single); - auto attr_cr32 = - ioRead.InquireAttribute>(cr32_Single); - auto attr_cr64 = - ioRead.InquireAttribute>(cr64_Single); + auto attr_cr32 = ioRead.InquireAttribute>(cr32_Single); + auto attr_cr64 = ioRead.InquireAttribute>(cr64_Single); EXPECT_TRUE(attr_s1); ASSERT_EQ(attr_s1.Name(), s1_Single); @@ -235,8 +227,8 @@ TEST_F(BPWriteReadAttributes, WriteReadSingleTypes) // ADIOS2 write read for array attributes TEST_F(BPWriteReadAttributes, WriteReadArrayTypes) { - const std::string fName = "foo" + std::string(&adios2::PathSeparator, 1) + - "WriteAttributeReadArrayTypes.bp"; + const std::string fName = + "foo" + std::string(&adios2::PathSeparator, 1) + "WriteAttributeReadArrayTypes.bp"; #if ADIOS2_USE_MPI int mpiRank = 0, mpiSize = 1; @@ -263,8 +255,7 @@ TEST_F(BPWriteReadAttributes, WriteReadArrayTypes) // When collective meta generation has landed, use // generateNewSmallTestData(m_TestData, 0, mpiRank, mpiSize); // Generate current testing data - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, 0, 0, 0); + SmallTestData currentTestData = generateNewSmallTestData(m_TestData, 0, 0, 0); // Write test data using BP #if ADIOS2_USE_MPI @@ -279,8 +270,7 @@ TEST_F(BPWriteReadAttributes, WriteReadArrayTypes) io.DefineAttribute(s1_Array, currentTestData.S3.data(), currentTestData.S3.size()); - io.DefineAttribute(i8_Array, currentTestData.I8.data(), - currentTestData.I8.size()); + io.DefineAttribute(i8_Array, currentTestData.I8.data(), currentTestData.I8.size()); io.DefineAttribute(i16_Array, currentTestData.I16.data(), currentTestData.I16.size()); io.DefineAttribute(i32_Array, currentTestData.I32.data(), @@ -288,8 +278,7 @@ TEST_F(BPWriteReadAttributes, WriteReadArrayTypes) io.DefineAttribute(i64_Array, currentTestData.I64.data(), currentTestData.I64.size()); - io.DefineAttribute(u8_Array, currentTestData.U8.data(), - currentTestData.U8.size()); + io.DefineAttribute(u8_Array, currentTestData.U8.data(), currentTestData.U8.size()); io.DefineAttribute(u16_Array, currentTestData.U16.data(), currentTestData.U16.size()); io.DefineAttribute(u32_Array, currentTestData.U32.data(), @@ -304,11 +293,9 @@ TEST_F(BPWriteReadAttributes, WriteReadArrayTypes) io.DefineAttribute(r128_Array, currentTestData.R128.data(), currentTestData.R128.size()); - io.DefineAttribute>(cr32_Array, - currentTestData.CR32.data(), + io.DefineAttribute>(cr32_Array, currentTestData.CR32.data(), currentTestData.CR32.size()); - io.DefineAttribute>(cr64_Array, - currentTestData.CR64.data(), + io.DefineAttribute>(cr64_Array, currentTestData.CR64.data(), currentTestData.CR64.size()); if (!engineName.empty()) @@ -335,8 +322,7 @@ TEST_F(BPWriteReadAttributes, WriteReadArrayTypes) ioRead.SetEngine(engineName); } - adios2::Engine bpRead = - ioRead.Open(fName, adios2::Mode::ReadRandomAccess); + adios2::Engine bpRead = ioRead.Open(fName, adios2::Mode::ReadRandomAccess); auto attr_s1 = ioRead.InquireAttribute(s1_Array); @@ -354,10 +340,8 @@ TEST_F(BPWriteReadAttributes, WriteReadArrayTypes) auto attr_r64 = ioRead.InquireAttribute(r64_Array); auto attr_r128 = ioRead.InquireAttribute(r128_Array); - auto attr_cr32 = - ioRead.InquireAttribute>(cr32_Array); - auto attr_cr64 = - ioRead.InquireAttribute>(cr64_Array); + auto attr_cr32 = ioRead.InquireAttribute>(cr32_Array); + auto attr_cr64 = ioRead.InquireAttribute>(cr64_Array); EXPECT_TRUE(attr_s1); ASSERT_EQ(attr_s1.Name(), s1_Array); @@ -459,8 +443,8 @@ TEST_F(BPWriteReadAttributes, WriteReadArrayTypes) TEST_F(BPWriteReadAttributes, BPWriteReadSingleTypesVar) { - const std::string fName = "foo" + std::string(&adios2::PathSeparator, 1) + - "BPWriteAttributeReadSingleTypesVar.bp"; + const std::string fName = + "foo" + std::string(&adios2::PathSeparator, 1) + "BPWriteAttributeReadSingleTypesVar.bp"; const std::string zero = std::to_string(0); const std::string s1_Single = std::string("s1_Single_") + zero; @@ -481,8 +465,7 @@ TEST_F(BPWriteReadAttributes, BPWriteReadSingleTypesVar) // When collective meta generation has landed, use // generateNewSmallTestData(m_TestData, 0, mpiRank, mpiSize); // Generate current testing data - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, 0, 0, 0); + SmallTestData currentTestData = generateNewSmallTestData(m_TestData, 0, 0, 0); const std::string separator = "/"; @@ -502,37 +485,25 @@ TEST_F(BPWriteReadAttributes, BPWriteReadSingleTypesVar) // Declare Single Value Attributes auto var = io.DefineVariable("myVar"); - io.DefineAttribute(s1_Single, currentTestData.S1, - var.Name()); - io.DefineAttribute(i8_Single, currentTestData.I8.front(), - var.Name()); - io.DefineAttribute(i16_Single, currentTestData.I16.front(), - var.Name()); - io.DefineAttribute(i32_Single, currentTestData.I32.front(), - var.Name()); - io.DefineAttribute(i64_Single, currentTestData.I64.front(), - var.Name()); + io.DefineAttribute(s1_Single, currentTestData.S1, var.Name()); + io.DefineAttribute(i8_Single, currentTestData.I8.front(), var.Name()); + io.DefineAttribute(i16_Single, currentTestData.I16.front(), var.Name()); + io.DefineAttribute(i32_Single, currentTestData.I32.front(), var.Name()); + io.DefineAttribute(i64_Single, currentTestData.I64.front(), var.Name()); - io.DefineAttribute(u8_Single, currentTestData.U8.front(), - var.Name()); - io.DefineAttribute(u16_Single, currentTestData.U16.front(), - var.Name()); - io.DefineAttribute(u32_Single, currentTestData.U32.front(), - var.Name()); - io.DefineAttribute(u64_Single, currentTestData.U64.front(), - var.Name()); - - io.DefineAttribute(r32_Single, currentTestData.R32.front(), - var.Name()); - io.DefineAttribute(r64_Single, currentTestData.R64.front(), - var.Name()); - io.DefineAttribute( - r128_Single, currentTestData.R128.front(), var.Name()); + io.DefineAttribute(u8_Single, currentTestData.U8.front(), var.Name()); + io.DefineAttribute(u16_Single, currentTestData.U16.front(), var.Name()); + io.DefineAttribute(u32_Single, currentTestData.U32.front(), var.Name()); + io.DefineAttribute(u64_Single, currentTestData.U64.front(), var.Name()); - io.DefineAttribute>( - cr32_Single, currentTestData.CR32.front(), var.Name()); - io.DefineAttribute>( - cr64_Single, currentTestData.CR64.front(), var.Name()); + io.DefineAttribute(r32_Single, currentTestData.R32.front(), var.Name()); + io.DefineAttribute(r64_Single, currentTestData.R64.front(), var.Name()); + io.DefineAttribute(r128_Single, currentTestData.R128.front(), var.Name()); + + io.DefineAttribute>(cr32_Single, currentTestData.CR32.front(), + var.Name()); + io.DefineAttribute>(cr64_Single, currentTestData.CR64.front(), + var.Name()); adios2::Engine engine = io.Open(fName, adios2::Mode::Write); engine.Put(var, 10); @@ -546,38 +517,27 @@ TEST_F(BPWriteReadAttributes, BPWriteReadSingleTypesVar) ioRead.SetEngine(engineName); } - adios2::Engine bpRead = - ioRead.Open(fName, adios2::Mode::ReadRandomAccess); + adios2::Engine bpRead = ioRead.Open(fName, adios2::Mode::ReadRandomAccess); auto var = ioRead.InquireVariable("myVar"); - auto attr_s1 = - ioRead.InquireAttribute(s1_Single, var.Name()); + auto attr_s1 = ioRead.InquireAttribute(s1_Single, var.Name()); auto attr_i8 = ioRead.InquireAttribute(i8_Single, var.Name()); - auto attr_i16 = - ioRead.InquireAttribute(i16_Single, var.Name()); - auto attr_i32 = - ioRead.InquireAttribute(i32_Single, var.Name()); - auto attr_i64 = - ioRead.InquireAttribute(i64_Single, var.Name()); + auto attr_i16 = ioRead.InquireAttribute(i16_Single, var.Name()); + auto attr_i32 = ioRead.InquireAttribute(i32_Single, var.Name()); + auto attr_i64 = ioRead.InquireAttribute(i64_Single, var.Name()); auto attr_u8 = ioRead.InquireAttribute(u8_Single, var.Name()); - auto attr_u16 = - ioRead.InquireAttribute(u16_Single, var.Name()); - auto attr_u32 = - ioRead.InquireAttribute(u32_Single, var.Name()); - auto attr_u64 = - ioRead.InquireAttribute(u64_Single, var.Name()); + auto attr_u16 = ioRead.InquireAttribute(u16_Single, var.Name()); + auto attr_u32 = ioRead.InquireAttribute(u32_Single, var.Name()); + auto attr_u64 = ioRead.InquireAttribute(u64_Single, var.Name()); auto attr_r32 = ioRead.InquireAttribute(r32_Single, var.Name()); auto attr_r64 = ioRead.InquireAttribute(r64_Single, var.Name()); - auto attr_r128 = - ioRead.InquireAttribute(r128_Single, var.Name()); + auto attr_r128 = ioRead.InquireAttribute(r128_Single, var.Name()); - auto attr_cr32 = ioRead.InquireAttribute>( - cr32_Single, var.Name()); - auto attr_cr64 = ioRead.InquireAttribute>( - cr64_Single, var.Name()); + auto attr_cr32 = ioRead.InquireAttribute>(cr32_Single, var.Name()); + auto attr_cr64 = ioRead.InquireAttribute>(cr64_Single, var.Name()); EXPECT_TRUE(attr_s1); ASSERT_EQ(attr_s1.Name(), var.Name() + separator + s1_Single); @@ -670,8 +630,8 @@ TEST_F(BPWriteReadAttributes, BPWriteReadSingleTypesVar) // ADIOS2 write read for array attributes TEST_F(BPWriteReadAttributes, WriteReadArrayTypesVar) { - const std::string fName = "foo" + std::string(&adios2::PathSeparator, 1) + - "BPWriteAttributeReadArrayTypesVar.bp"; + const std::string fName = + "foo" + std::string(&adios2::PathSeparator, 1) + "BPWriteAttributeReadArrayTypesVar.bp"; #if ADIOS2_USE_MPI int mpiRank = 0, mpiSize = 1; @@ -697,8 +657,7 @@ TEST_F(BPWriteReadAttributes, WriteReadArrayTypesVar) const std::string separator = "/"; - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, 0, 0, 0); + SmallTestData currentTestData = generateNewSmallTestData(m_TestData, 0, 0, 0); // Write test data using BP #if ADIOS2_USE_MPI @@ -714,8 +673,8 @@ TEST_F(BPWriteReadAttributes, WriteReadArrayTypesVar) io.DefineAttribute(s1_Array, currentTestData.S3.data(), currentTestData.S3.size(), var.Name()); - io.DefineAttribute(i8_Array, currentTestData.I8.data(), - currentTestData.I8.size(), var.Name()); + io.DefineAttribute(i8_Array, currentTestData.I8.data(), currentTestData.I8.size(), + var.Name()); io.DefineAttribute(i16_Array, currentTestData.I16.data(), currentTestData.I16.size(), var.Name()); io.DefineAttribute(i32_Array, currentTestData.I32.data(), @@ -723,8 +682,8 @@ TEST_F(BPWriteReadAttributes, WriteReadArrayTypesVar) io.DefineAttribute(i64_Array, currentTestData.I64.data(), currentTestData.I64.size(), var.Name()); - io.DefineAttribute(u8_Array, currentTestData.U8.data(), - currentTestData.U8.size(), var.Name()); + io.DefineAttribute(u8_Array, currentTestData.U8.data(), currentTestData.U8.size(), + var.Name()); io.DefineAttribute(u16_Array, currentTestData.U16.data(), currentTestData.U16.size(), var.Name()); io.DefineAttribute(u32_Array, currentTestData.U32.data(), @@ -732,20 +691,17 @@ TEST_F(BPWriteReadAttributes, WriteReadArrayTypesVar) io.DefineAttribute(u64_Array, currentTestData.U64.data(), currentTestData.U64.size(), var.Name()); - io.DefineAttribute(r32_Array, currentTestData.R32.data(), - currentTestData.R32.size(), var.Name()); + io.DefineAttribute(r32_Array, currentTestData.R32.data(), currentTestData.R32.size(), + var.Name()); io.DefineAttribute(r64_Array, currentTestData.R64.data(), currentTestData.R64.size(), var.Name()); io.DefineAttribute(r128_Array, currentTestData.R128.data(), - currentTestData.R128.size(), - var.Name()); + currentTestData.R128.size(), var.Name()); - io.DefineAttribute>( - cr32_Array, currentTestData.CR32.data(), - currentTestData.CR32.size(), var.Name()); - io.DefineAttribute>( - cr64_Array, currentTestData.CR64.data(), - currentTestData.CR64.size(), var.Name()); + io.DefineAttribute>(cr32_Array, currentTestData.CR32.data(), + currentTestData.CR32.size(), var.Name()); + io.DefineAttribute>(cr64_Array, currentTestData.CR64.data(), + currentTestData.CR64.size(), var.Name()); if (!engineName.empty()) { @@ -770,13 +726,11 @@ TEST_F(BPWriteReadAttributes, WriteReadArrayTypesVar) ioRead.SetEngine(engineName); } - adios2::Engine bpRead = - ioRead.Open(fName, adios2::Mode::ReadRandomAccess); + adios2::Engine bpRead = ioRead.Open(fName, adios2::Mode::ReadRandomAccess); auto var = ioRead.InquireVariable("myVar"); - auto attr_s1 = - ioRead.InquireAttribute(s1_Array, var.Name()); + auto attr_s1 = ioRead.InquireAttribute(s1_Array, var.Name()); auto attr_i8 = ioRead.InquireAttribute(i8_Array, var.Name()); auto attr_i16 = ioRead.InquireAttribute(i16_Array, var.Name()); @@ -784,22 +738,16 @@ TEST_F(BPWriteReadAttributes, WriteReadArrayTypesVar) auto attr_i64 = ioRead.InquireAttribute(i64_Array, var.Name()); auto attr_u8 = ioRead.InquireAttribute(u8_Array, var.Name()); - auto attr_u16 = - ioRead.InquireAttribute(u16_Array, var.Name()); - auto attr_u32 = - ioRead.InquireAttribute(u32_Array, var.Name()); - auto attr_u64 = - ioRead.InquireAttribute(u64_Array, var.Name()); + auto attr_u16 = ioRead.InquireAttribute(u16_Array, var.Name()); + auto attr_u32 = ioRead.InquireAttribute(u32_Array, var.Name()); + auto attr_u64 = ioRead.InquireAttribute(u64_Array, var.Name()); auto attr_r32 = ioRead.InquireAttribute(r32_Array, var.Name()); auto attr_r64 = ioRead.InquireAttribute(r64_Array, var.Name()); - auto attr_r128 = - ioRead.InquireAttribute(r128_Array, var.Name()); + auto attr_r128 = ioRead.InquireAttribute(r128_Array, var.Name()); - auto attr_cr32 = ioRead.InquireAttribute>( - cr32_Array, var.Name()); - auto attr_cr64 = ioRead.InquireAttribute>( - cr64_Array, var.Name()); + auto attr_cr32 = ioRead.InquireAttribute>(cr32_Array, var.Name()); + auto attr_cr64 = ioRead.InquireAttribute>(cr64_Array, var.Name()); EXPECT_TRUE(attr_s1); ASSERT_EQ(attr_s1.Name(), var.Name() + separator + s1_Array); @@ -901,8 +849,8 @@ TEST_F(BPWriteReadAttributes, WriteReadArrayTypesVar) TEST_F(BPWriteReadAttributes, WriteReadStreamVarp) { - const std::string fName = "foo" + std::string(&adios2::PathSeparator, 1) + - "AttributesWriteReadVar.bp"; + const std::string fName = + "foo" + std::string(&adios2::PathSeparator, 1) + "AttributesWriteReadVar.bp"; const std::string separator = "\\"; @@ -918,8 +866,7 @@ TEST_F(BPWriteReadAttributes, WriteReadStreamVarp) MPI_Comm_size(MPI_COMM_WORLD, &mpiSize); #endif - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, 0, 0, 0); + SmallTestData currentTestData = generateNewSmallTestData(m_TestData, 0, 0, 0); // Write test data using BP #if ADIOS2_USE_MPI @@ -947,33 +894,27 @@ TEST_F(BPWriteReadAttributes, WriteReadStreamVarp) auto var2 = io.DefineVariable("var2", shape, start, count); io.DefineAttribute("sArray", currentTestData.S3.data(), - currentTestData.S3.size(), var1.Name(), - separator); + currentTestData.S3.size(), var1.Name(), separator); io.DefineAttribute("sArray", currentTestData.S3.data(), - currentTestData.S3.size(), var2.Name(), - separator); + currentTestData.S3.size(), var2.Name(), separator); io.DefineAttribute("u32Value", 1, var1.Name(), separator); io.DefineAttribute("u32Value", 1, var2.Name(), separator); #ifndef _WIN32 - io.DefineAttribute("smile", "\u263A", var1.Name(), - separator); - io.DefineAttribute("smile", "\u263A", var2.Name(), - separator); - - io.DefineAttribute("utf8", std::string("महसुस"), - var1.Name(), separator); - io.DefineAttribute("utf8", std::string("महसुस"), - var2.Name(), separator); + io.DefineAttribute("smile", "\u263A", var1.Name(), separator); + io.DefineAttribute("smile", "\u263A", var2.Name(), separator); + + io.DefineAttribute("utf8", std::string("महसुस"), var1.Name(), separator); + io.DefineAttribute("utf8", std::string("महसुस"), var2.Name(), separator); #endif adios2::Engine bpWriter = io.Open(fName, adios2::Mode::Write); for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); const int32_t step32 = static_cast(step); @@ -990,8 +931,7 @@ TEST_F(BPWriteReadAttributes, WriteReadStreamVarp) // reader { - auto lf_VerifyAttributes = [](const std::string &variableName, - const std::string separator, + auto lf_VerifyAttributes = [](const std::string &variableName, const std::string separator, adios2::IO &io, const bool fullNames) { const std::map attributesInfo = io.AvailableAttributes(variableName, separator, fullNames); @@ -1002,8 +942,7 @@ TEST_F(BPWriteReadAttributes, WriteReadStreamVarp) EXPECT_NE(itSArray, attributesInfo.end()); EXPECT_EQ(itSArray->second.at("Type"), "string"); EXPECT_EQ(itSArray->second.at("Elements"), "3"); - EXPECT_EQ(itSArray->second.at("Value"), - R"({ "one", "two", "three" })"); + EXPECT_EQ(itSArray->second.at("Value"), R"({ "one", "two", "three" })"); const std::string u32ValueName = fullNames ? variableName + separator + "u32Value" : "u32Value"; @@ -1014,22 +953,19 @@ TEST_F(BPWriteReadAttributes, WriteReadStreamVarp) EXPECT_EQ(itU32Value->second.at("Value"), "1"); #ifndef _WIN32 - const std::string smileName = - fullNames ? variableName + separator + "smile" : "smile"; + const std::string smileName = fullNames ? variableName + separator + "smile" : "smile"; auto itSmile = attributesInfo.find(smileName); EXPECT_NE(itSmile, attributesInfo.end()); EXPECT_EQ(itSmile->second.at("Type"), "string"); EXPECT_EQ(itSmile->second.at("Elements"), "1"); EXPECT_EQ(itSmile->second.at("Value"), std::string("\"\u263A\"")); - const std::string utf8Name = - fullNames ? variableName + separator + "utf8" : "utf8"; + const std::string utf8Name = fullNames ? variableName + separator + "utf8" : "utf8"; auto itUTF8 = attributesInfo.find(utf8Name); EXPECT_NE(itUTF8, attributesInfo.end()); EXPECT_EQ(itUTF8->second.at("Type"), "string"); EXPECT_EQ(itUTF8->second.at("Elements"), "1"); - EXPECT_EQ(itUTF8->second.at("Value"), - "\"" + std::string("महसुस") + "\""); + EXPECT_EQ(itUTF8->second.at("Value"), "\"" + std::string("महसुस") + "\""); #endif }; @@ -1067,8 +1003,8 @@ TEST_F(BPWriteReadAttributes, WriteReadStreamVarp) TEST_F(BPWriteReadAttributes, WriteReadStreamModifiable) { - const std::string fName = "foo" + std::string(&adios2::PathSeparator, 1) + - "AttributesWriteReadModifiable.bp"; + const std::string fName = + "foo" + std::string(&adios2::PathSeparator, 1) + "AttributesWriteReadModifiable.bp"; const std::string separator = "\\"; @@ -1085,8 +1021,7 @@ TEST_F(BPWriteReadAttributes, WriteReadStreamModifiable) #endif const double d3[3] = {-1.1, -1.2, -1.3}; - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, 0, 0, 0); + SmallTestData currentTestData = generateNewSmallTestData(m_TestData, 0, 0, 0); // Write test data using BP #if ADIOS2_USE_MPI @@ -1112,23 +1047,19 @@ TEST_F(BPWriteReadAttributes, WriteReadStreamModifiable) auto var1 = io.DefineVariable("var1"); auto var2 = io.DefineVariable("var2", shape, start, count); - io.DefineAttribute("dArray", d3, 3, var1.Name(), separator, - true); - io.DefineAttribute("dArray", d3, 3, var2.Name(), separator, - true); + io.DefineAttribute("dArray", d3, 3, var1.Name(), separator, true); + io.DefineAttribute("dArray", d3, 3, var2.Name(), separator, true); - io.DefineAttribute("i32Value", -1, var1.Name(), separator, - true); - io.DefineAttribute("i32Value", -1, var2.Name(), separator, - true); + io.DefineAttribute("i32Value", -1, var1.Name(), separator, true); + io.DefineAttribute("i32Value", -1, var2.Name(), separator, true); adios2::Engine bpWriter = io.Open(fName, adios2::Mode::Write); for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); const int32_t step32 = static_cast(step); const double stepD = static_cast(step); @@ -1136,19 +1067,15 @@ TEST_F(BPWriteReadAttributes, WriteReadStreamModifiable) bpWriter.BeginStep(); - io.DefineAttribute("dArray", d, 3, var1.Name(), separator, - true); - io.DefineAttribute("i32Value", step32, var1.Name(), - separator, true); + io.DefineAttribute("dArray", d, 3, var1.Name(), separator, true); + io.DefineAttribute("i32Value", step32, var1.Name(), separator, true); bpWriter.Put(var1, step32); if (step % 2 == 0) { bpWriter.Put(var2, currentTestData.I32.data()); - io.DefineAttribute("dArray", d, 3, var2.Name(), - separator, true); - io.DefineAttribute("i32Value", step32, var2.Name(), - separator, true); + io.DefineAttribute("dArray", d, 3, var2.Name(), separator, true); + io.DefineAttribute("i32Value", step32, var2.Name(), separator, true); } bpWriter.EndStep(); @@ -1158,10 +1085,8 @@ TEST_F(BPWriteReadAttributes, WriteReadStreamModifiable) // reader { - auto lf_VerifyAttributes = [](const int32_t step, - const std::string &variableName, - const std::string separator, - adios2::IO &io) { + auto lf_VerifyAttributes = [](const int32_t step, const std::string &variableName, + const std::string separator, adios2::IO &io) { const std::map attributesInfo = io.AvailableAttributes(variableName, separator, false); @@ -1173,8 +1098,7 @@ TEST_F(BPWriteReadAttributes, WriteReadStreamModifiable) EXPECT_EQ(itDArray->second.at("Type"), "double"); EXPECT_EQ(itDArray->second.at("Elements"), "3"); - auto a = - io.InquireAttribute("dArray", variableName, separator); + auto a = io.InquireAttribute("dArray", variableName, separator); auto adata = a.Data(); for (int i = 0; i < 3; ++i) { diff --git a/testing/adios2/engine/bp/TestBPWriteReadAttributesMultirank.cpp b/testing/adios2/engine/bp/TestBPWriteReadAttributesMultirank.cpp index c0a99b7943..4a961882bc 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadAttributesMultirank.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadAttributesMultirank.cpp @@ -28,9 +28,8 @@ class BPWriteReadAttributeTestMultirank : public ::testing::Test // ADIOS2 declare attributes on multiple ranks TEST_F(BPWriteReadAttributeTestMultirank, ADIOS2BPWriteReadArrayTypes) { - const std::string fName = - "foo" + std::string(&adios2::PathSeparator, 1) + - "ADIOS2BPWriteAttributeMultirankReadArrayTypes.bp"; + const std::string fName = "foo" + std::string(&adios2::PathSeparator, 1) + + "ADIOS2BPWriteAttributeMultirankReadArrayTypes.bp"; int mpiRank = 0; #if ADIOS2_USE_MPI @@ -38,13 +37,11 @@ TEST_F(BPWriteReadAttributeTestMultirank, ADIOS2BPWriteReadArrayTypes) #endif // a different variable and associated attribute on each rank - std::string varpath = "rank" + std::to_string(mpiRank) + - std::string(&adios2::PathSeparator, 1) + "value"; - std::string attrpath = - varpath + std::string(&adios2::PathSeparator, 1) + "description"; + std::string varpath = + "rank" + std::to_string(mpiRank) + std::string(&adios2::PathSeparator, 1) + "value"; + std::string attrpath = varpath + std::string(&adios2::PathSeparator, 1) + "description"; std::string desc = - "This variable and associated attribute was created on rank " + - std::to_string(mpiRank); + "This variable and associated attribute was created on rank " + std::to_string(mpiRank); // Write test data using BP #if ADIOS2_USE_MPI @@ -55,17 +52,15 @@ TEST_F(BPWriteReadAttributeTestMultirank, ADIOS2BPWriteReadArrayTypes) { adios2::IO io = adios.DeclareIO("TestIO"); - io.DefineAttribute("GlobalAttribute", - "Defined on all ranks"); + io.DefineAttribute("GlobalAttribute", "Defined on all ranks"); auto var = io.DefineVariable(varpath); auto attr = io.DefineAttribute(attrpath, desc); (void)var; (void)attr; - std::cout << "Rank " << mpiRank << " create variable " << varpath - << " = " << mpiRank << " and attribute " << attrpath - << " = \"" << desc << "\"" << std::endl; + std::cout << "Rank " << mpiRank << " create variable " << varpath << " = " << mpiRank + << " and attribute " << attrpath << " = \"" << desc << "\"" << std::endl; if (!engineName.empty()) { @@ -93,8 +88,7 @@ TEST_F(BPWriteReadAttributeTestMultirank, ADIOS2BPWriteReadArrayTypes) ioRead.SetEngine(engineName); } - adios2::Engine bpRead = - ioRead.Open(fName, adios2::Mode::ReadRandomAccess); + adios2::Engine bpRead = ioRead.Open(fName, adios2::Mode::ReadRandomAccess); auto var = ioRead.InquireVariable(varpath); EXPECT_TRUE(var); @@ -110,8 +104,8 @@ TEST_F(BPWriteReadAttributeTestMultirank, ADIOS2BPWriteReadArrayTypes) EXPECT_TRUE(attr); ASSERT_EQ(attr.Name(), attrpath); ASSERT_EQ(attr.Data().size() == 1, true); - std::cout << "Rank " << mpiRank << " attribute is " << attrpath - << " = \"" << attr.Data()[0] << "\"" << std::endl; + std::cout << "Rank " << mpiRank << " attribute is " << attrpath << " = \"" << attr.Data()[0] + << "\"" << std::endl; ASSERT_EQ(attr.Type(), "string"); bpRead.Close(); diff --git a/testing/adios2/engine/bp/TestBPWriteReadBlockInfo.cpp b/testing/adios2/engine/bp/TestBPWriteReadBlockInfo.cpp index e4953c0455..228e4007a2 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadBlockInfo.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadBlockInfo.cpp @@ -31,8 +31,7 @@ namespace template void CheckAllStepsBlockInfo1D( - const std::vector::Info>> - &allStepsBlocksInfo, + const std::vector::Info>> &allStepsBlocksInfo, const size_t NSteps, const size_t Nx) { EXPECT_EQ(allStepsBlocksInfo.size(), NSteps); @@ -51,9 +50,8 @@ void CheckAllStepsBlockInfo1D( } } -void CheckStepsBlockInfo1D_C(adios2_variable *var, adios2_varinfo *vi, - const size_t NSteps, const size_t nproc, - const size_t Nx) +void CheckStepsBlockInfo1D_C(adios2_variable *var, adios2_varinfo *vi, const size_t NSteps, + const size_t nproc, const size_t Nx) { (void)NSteps; EXPECT_EQ(vi->nblocks, nproc); @@ -79,9 +77,8 @@ void CheckStepsBlockInfo1D_C(adios2_variable *var, adios2_varinfo *vi, else { // std::cout << "Unexpected shape ID " << std::endl; - throw std::invalid_argument( - "Variable " + std::string(name) + - " is expected to be a global value or array "); + throw std::invalid_argument("Variable " + std::string(name) + + " is expected to be a global value or array "); } EXPECT_FALSE(vi->IsReverseDims); @@ -107,8 +104,7 @@ void CheckStepsBlockInfo1D_C(adios2_variable *var, adios2_varinfo *vi, template void CheckAllStepsBlockInfo2D( - const std::vector::Info>> - &allStepsBlocksInfo, + const std::vector::Info>> &allStepsBlocksInfo, const size_t NSteps, const size_t Nx, const size_t Ny) { EXPECT_EQ(allStepsBlocksInfo.size(), NSteps); @@ -165,10 +161,8 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo1D8) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_local = - io.DefineVariable("local", {adios2::LocalValueDim}); - auto var_localStr = - io.DefineVariable("localStr", {adios2::LocalValueDim}); + auto var_local = io.DefineVariable("local", {adios2::LocalValueDim}); + auto var_localStr = io.DefineVariable("localStr", {adios2::LocalValueDim}); auto var_iString = io.DefineVariable("iString"); auto var_i8 = io.DefineVariable("i8", shape, start, count); @@ -181,10 +175,8 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo1D8) auto var_u64 = io.DefineVariable("u64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); auto var_r64 = io.DefineVariable("r64", shape, start, count); - auto var_cr32 = - io.DefineVariable>("cr32", shape, start, count); - auto var_cr64 = io.DefineVariable>("cr64", shape, - start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); if (!engineName.empty()) { @@ -202,8 +194,8 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo1D8) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); bpWriter.BeginStep(); @@ -240,8 +232,7 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo1D8) { io.SetEngine("BPFile"); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_local = io.InquireVariable("local"); auto var_localStr = io.InquireVariable("localStr"); @@ -260,33 +251,31 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo1D8) auto var_cr32 = io.InquireVariable>("cr32"); auto var_cr64 = io.InquireVariable>("cr64"); - const std::vector::Info>> - allStepsBlocksInfoI8 = var_i8.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoI16 = var_i16.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoI32 = var_i32.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoI64 = var_i64.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoU8 = var_u8.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoU16 = var_u16.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoU32 = var_u32.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoU64 = var_u64.AllStepsBlocksInfo(); - - const std::vector::Info>> - allStepsBlocksInfoR32 = var_r32.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoR64 = var_r64.AllStepsBlocksInfo(); - - const std::vector< - std::vector>::Info>> + const std::vector::Info>> allStepsBlocksInfoI8 = + var_i8.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoI16 = + var_i16.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoI32 = + var_i32.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoI64 = + var_i64.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoU8 = + var_u8.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoU16 = + var_u16.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoU32 = + var_u32.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoU64 = + var_u64.AllStepsBlocksInfo(); + + const std::vector::Info>> allStepsBlocksInfoR32 = + var_r32.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoR64 = + var_r64.AllStepsBlocksInfo(); + + const std::vector>::Info>> allStepsBlocksInfoCR32 = var_cr32.AllStepsBlocksInfo(); - const std::vector< - std::vector>::Info>> + const std::vector>::Info>> allStepsBlocksInfoCR64 = var_cr64.AllStepsBlocksInfo(); EXPECT_EQ(allStepsBlocksInfoI8.size(), NSteps); @@ -312,10 +301,8 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo1D8) CheckAllStepsBlockInfo1D(allStepsBlocksInfoU64, NSteps, Nx); CheckAllStepsBlockInfo1D(allStepsBlocksInfoR32, NSteps, Nx); CheckAllStepsBlockInfo1D(allStepsBlocksInfoR64, NSteps, Nx); - CheckAllStepsBlockInfo1D>(allStepsBlocksInfoCR32, - NSteps, Nx); - CheckAllStepsBlockInfo1D>(allStepsBlocksInfoCR64, - NSteps, Nx); + CheckAllStepsBlockInfo1D>(allStepsBlocksInfoCR32, NSteps, Nx); + CheckAllStepsBlockInfo1D>(allStepsBlocksInfoCR64, NSteps, Nx); // TODO: other types @@ -373,8 +360,8 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo1D8) var_cr64.SetStepSelection({t, 1}); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); bpReader.Get(var_iString, IString); @@ -508,10 +495,8 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo2D2x4) auto var_u64 = io.DefineVariable("u64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); auto var_r64 = io.DefineVariable("r64", shape, start, count); - auto var_cr32 = - io.DefineVariable>("cr32", shape, start, count); - auto var_cr64 = io.DefineVariable>("cr64", shape, - start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); if (!engineName.empty()) { @@ -529,8 +514,8 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo2D2x4) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); bpWriter.BeginStep(); bpWriter.Put(var_iString, currentTestData.S1); @@ -564,8 +549,7 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo2D2x4) // Create the BP Engine io.SetEngine("BPFile"); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_iString = io.InquireVariable("iString"); auto var_i8 = io.InquireVariable("i8"); @@ -581,31 +565,29 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo2D2x4) auto var_cr32 = io.InquireVariable>("cr32"); auto var_cr64 = io.InquireVariable>("cr64"); - const std::vector::Info>> - allStepsBlocksInfoI8 = var_i8.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoI16 = var_i16.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoI32 = var_i32.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoI64 = var_i64.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoU8 = var_u8.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoU16 = var_u16.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoU32 = var_u32.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoU64 = var_u64.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoR32 = var_r32.AllStepsBlocksInfo(); - const std::vector::Info>> - allStepsBlocksInfoR64 = var_r64.AllStepsBlocksInfo(); - const std::vector< - std::vector>::Info>> + const std::vector::Info>> allStepsBlocksInfoI8 = + var_i8.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoI16 = + var_i16.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoI32 = + var_i32.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoI64 = + var_i64.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoU8 = + var_u8.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoU16 = + var_u16.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoU32 = + var_u32.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoU64 = + var_u64.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoR32 = + var_r32.AllStepsBlocksInfo(); + const std::vector::Info>> allStepsBlocksInfoR64 = + var_r64.AllStepsBlocksInfo(); + const std::vector>::Info>> allStepsBlocksInfoCR32 = var_cr32.AllStepsBlocksInfo(); - const std::vector< - std::vector>::Info>> + const std::vector>::Info>> allStepsBlocksInfoCR64 = var_cr64.AllStepsBlocksInfo(); EXPECT_EQ(allStepsBlocksInfoI8.size(), NSteps); @@ -622,25 +604,17 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo2D2x4) EXPECT_EQ(allStepsBlocksInfoCR64.size(), NSteps); CheckAllStepsBlockInfo2D(allStepsBlocksInfoI8, NSteps, Nx, Ny); - CheckAllStepsBlockInfo2D(allStepsBlocksInfoI16, NSteps, Nx, - Ny); - CheckAllStepsBlockInfo2D(allStepsBlocksInfoI32, NSteps, Nx, - Ny); - CheckAllStepsBlockInfo2D(allStepsBlocksInfoI64, NSteps, Nx, - Ny); + CheckAllStepsBlockInfo2D(allStepsBlocksInfoI16, NSteps, Nx, Ny); + CheckAllStepsBlockInfo2D(allStepsBlocksInfoI32, NSteps, Nx, Ny); + CheckAllStepsBlockInfo2D(allStepsBlocksInfoI64, NSteps, Nx, Ny); CheckAllStepsBlockInfo2D(allStepsBlocksInfoU8, NSteps, Nx, Ny); - CheckAllStepsBlockInfo2D(allStepsBlocksInfoU16, NSteps, Nx, - Ny); - CheckAllStepsBlockInfo2D(allStepsBlocksInfoU32, NSteps, Nx, - Ny); - CheckAllStepsBlockInfo2D(allStepsBlocksInfoU64, NSteps, Nx, - Ny); + CheckAllStepsBlockInfo2D(allStepsBlocksInfoU16, NSteps, Nx, Ny); + CheckAllStepsBlockInfo2D(allStepsBlocksInfoU32, NSteps, Nx, Ny); + CheckAllStepsBlockInfo2D(allStepsBlocksInfoU64, NSteps, Nx, Ny); CheckAllStepsBlockInfo2D(allStepsBlocksInfoR32, NSteps, Nx, Ny); CheckAllStepsBlockInfo2D(allStepsBlocksInfoR64, NSteps, Nx, Ny); - CheckAllStepsBlockInfo2D>(allStepsBlocksInfoCR32, - NSteps, Nx, Ny); - CheckAllStepsBlockInfo2D>(allStepsBlocksInfoCR64, - NSteps, Nx, Ny); + CheckAllStepsBlockInfo2D>(allStepsBlocksInfoCR32, NSteps, Nx, Ny); + CheckAllStepsBlockInfo2D>(allStepsBlocksInfoCR64, NSteps, Nx, Ny); std::string IString; std::array I8; @@ -709,8 +683,8 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo2D2x4) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString, currentTestData.S1); @@ -772,10 +746,8 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo1D8_C) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_local = - io.DefineVariable("local", {adios2::LocalValueDim}); - auto var_localStr = - io.DefineVariable("localStr", {adios2::LocalValueDim}); + auto var_local = io.DefineVariable("local", {adios2::LocalValueDim}); + auto var_localStr = io.DefineVariable("localStr", {adios2::LocalValueDim}); auto var_iString = io.DefineVariable("iString"); auto var_i8 = io.DefineVariable("i8", shape, start, count); @@ -788,10 +760,8 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo1D8_C) auto var_u64 = io.DefineVariable("u64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); auto var_r64 = io.DefineVariable("r64", shape, start, count); - auto var_cr32 = - io.DefineVariable>("cr32", shape, start, count); - auto var_cr64 = io.DefineVariable>("cr64", shape, - start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); if (!engineName.empty()) { @@ -809,8 +779,8 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo1D8_C) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); bpWriter.BeginStep(); @@ -853,8 +823,7 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo1D8_C) adios2_set_engine(ioR, "BPFile"); } - adios2_engine *engineR = - adios2_open(ioR, fname.data(), adios2_mode_read); + adios2_engine *engineR = adios2_open(ioR, fname.data(), adios2_mode_read); for (size_t t = 0; t < NSteps; ++t) { @@ -866,38 +835,32 @@ TEST_F(BPWriteReadBlockInfo, BPWriteReadBlockInfo1D8_C) { auto *var_local = adios2_inquire_variable(ioR, "local"); EXPECT_NE(var_local, nullptr); - adios2_varinfo *vi_local = - adios2_inquire_blockinfo(engineR, var_local, 0); + adios2_varinfo *vi_local = adios2_inquire_blockinfo(engineR, var_local, 0); CheckStepsBlockInfo1D_C(var_local, vi_local, t, mpiSize, 1); } { auto *var_localStr = adios2_inquire_variable(ioR, "localStr"); EXPECT_NE(var_localStr, nullptr); - adios2_varinfo *vi_localStr = - adios2_inquire_blockinfo(engineR, var_localStr, 0); - CheckStepsBlockInfo1D_C(var_localStr, vi_localStr, t, mpiSize, - 1); + adios2_varinfo *vi_localStr = adios2_inquire_blockinfo(engineR, var_localStr, 0); + CheckStepsBlockInfo1D_C(var_localStr, vi_localStr, t, mpiSize, 1); } { auto *var_iString = adios2_inquire_variable(ioR, "iString"); EXPECT_NE(var_iString, nullptr); - adios2_varinfo *vi_iString = - adios2_inquire_blockinfo(engineR, var_iString, 0); + adios2_varinfo *vi_iString = adios2_inquire_blockinfo(engineR, var_iString, 0); CheckStepsBlockInfo1D_C(var_iString, vi_iString, t, mpiSize, 1); } { auto *var_i8 = adios2_inquire_variable(ioR, "i8"); EXPECT_NE(var_i8, nullptr); - adios2_varinfo *vi_i8 = - adios2_inquire_blockinfo(engineR, var_i8, 0); + adios2_varinfo *vi_i8 = adios2_inquire_blockinfo(engineR, var_i8, 0); CheckStepsBlockInfo1D_C(var_i8, vi_i8, t, mpiSize, Nx); } { auto *var_r64 = adios2_inquire_variable(ioR, "r64"); EXPECT_NE(var_r64, nullptr); - adios2_varinfo *vi_r64 = - adios2_inquire_blockinfo(engineR, var_r64, 0); + adios2_varinfo *vi_r64 = adios2_inquire_blockinfo(engineR, var_r64, 0); CheckStepsBlockInfo1D_C(var_r64, vi_r64, t, mpiSize, Nx); } /* diff --git a/testing/adios2/engine/bp/TestBPWriteReadCuda.cpp b/testing/adios2/engine/bp/TestBPWriteReadCuda.cpp index 83689bbc8e..a3f1797e34 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadCuda.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadCuda.cpp @@ -32,13 +32,11 @@ void CUDAWrongMemSpace() const adios2::Dims start{0}; const adios2::Dims count{Nx}; auto var_r32 = io.DefineVariable("r32", shape, start, count); - auto var_r32_cpu = - io.DefineVariable("r32cpu", shape, start, count); + auto var_r32_cpu = io.DefineVariable("r32cpu", shape, start, count); float *gpuSimData = nullptr; cudaMalloc(&gpuSimData, Nx * sizeof(float)); - cudaMemcpy(gpuSimData, (float *)&r32s[0], Nx * sizeof(float), - cudaMemcpyHostToDevice); + cudaMemcpy(gpuSimData, (float *)&r32s[0], Nx * sizeof(float), cudaMemcpyHostToDevice); io.SetEngine("BP5"); if (!engineName.empty()) @@ -74,8 +72,7 @@ void CUDAWrongMemSpace() float *gpuSimData; cudaMalloc(&gpuSimData, Nx * sizeof(float)); var_r32.SetMemorySpace(adios2::MemorySpace::Host); - EXPECT_THROW(bpReader.Get(var_r32, gpuSimData, adios2::Mode::Sync), - std::ios_base::failure); + EXPECT_THROW(bpReader.Get(var_r32, gpuSimData, adios2::Mode::Sync), std::ios_base::failure); var_r32.SetMemorySpace(adios2::MemorySpace::GPU); EXPECT_THROW(bpReader.Get(var_r32, r32o.data(), adios2::Mode::Sync), std::ios_base::failure); @@ -114,8 +111,7 @@ void CUDADetectMemSpace(const std::string mode) float *gpuSimData = nullptr; cudaMalloc(&gpuSimData, NTotal * sizeof(float)); - cudaMemcpy(gpuSimData, (float *)&r32s[0], NTotal * sizeof(float), - cudaMemcpyHostToDevice); + cudaMemcpy(gpuSimData, (float *)&r32s[0], NTotal * sizeof(float), cudaMemcpyHostToDevice); io.SetEngine("BP5"); @@ -130,8 +126,7 @@ void CUDADetectMemSpace(const std::string mode) // Update values in the simulation data cuda_increment(NTotal, 1, 0, gpuSimData, INCREMENT); std::transform(r32s.begin(), r32s.end(), r32s.begin(), - std::bind(std::plus(), std::placeholders::_1, - INCREMENT)); + std::bind(std::plus(), std::placeholders::_1, INCREMENT)); bpWriter.BeginStep(); if (step % 2 == 0) @@ -177,19 +172,17 @@ void CUDADetectMemSpace(const std::string mode) { bpReader.Get(var_r32, gpuSimData, ioMode); bpReader.EndStep(); - cudaMemcpy(r32o.data(), gpuSimData, NTotal * sizeof(float), - cudaMemcpyDeviceToHost); + cudaMemcpy(r32o.data(), gpuSimData, NTotal * sizeof(float), cudaMemcpyDeviceToHost); } // Remove INCREMENT from each element - std::transform(r32o.begin(), r32o.end(), r32o.begin(), - std::bind(std::minus(), std::placeholders::_1, - (t + 1) * INCREMENT)); + std::transform( + r32o.begin(), r32o.end(), r32o.begin(), + std::bind(std::minus(), std::placeholders::_1, (t + 1) * INCREMENT)); for (size_t i = 0; i < NTotal; i++) { char msg[1 << 8] = {0}; - snprintf(msg, sizeof(msg), "t=%d i=%zu r32o=%f r32s=%f", t, i, - r32o[i], r32s[i]); + snprintf(msg, sizeof(msg), "t=%d i=%zu r32o=%f r32s=%f", t, i, r32o[i], r32s[i]); ASSERT_LT(std::abs(r32o[i] - r32s[i]), EPSILON) << msg; } } @@ -213,8 +206,7 @@ void CUDAWriteReadMemorySelection() // cuda simulation buffer float *gpuSimData = nullptr; cudaMalloc(&gpuSimData, (Nx + 2 * ghostCells) * sizeof(float)); - cudaMemcpy(gpuSimData, r32s.data(), - (Nx + 2 * ghostCells) * sizeof(float), + cudaMemcpy(gpuSimData, r32s.data(), (Nx + 2 * ghostCells) * sizeof(float), cudaMemcpyHostToDevice); adios2::IO io = adios.DeclareIO("TestIO"); @@ -279,18 +271,16 @@ void CUDAWriteReadMemorySelection() var_r32.SetMemorySpace(adios2::MemorySpace::GPU); bpReader.Get(var_r32, gpuSimData); bpReader.EndStep(); - cudaMemcpy(r32o.data(), gpuSimData, Nx * sizeof(float), - cudaMemcpyDeviceToHost); + cudaMemcpy(r32o.data(), gpuSimData, Nx * sizeof(float), cudaMemcpyDeviceToHost); // Remove INCREMENT from each element - std::transform(r32o.begin(), r32o.end(), r32o.begin(), - std::bind(std::minus(), std::placeholders::_1, - (t + 1) * INCREMENT)); + std::transform( + r32o.begin(), r32o.end(), r32o.begin(), + std::bind(std::minus(), std::placeholders::_1, (t + 1) * INCREMENT)); for (size_t i = 0; i < Nx; i++) { char msg[1 << 8] = {0}; - snprintf(msg, sizeof(msg), "t=%d i=%zu r32o=%f r32s=%f", t, i, - r32o[i], r32s[i]); + snprintf(msg, sizeof(msg), "t=%d i=%zu r32o=%f r32s=%f", t, i, r32o[i], r32s[i]); ASSERT_LT(std::abs(r32o[i] - r32s[i]), EPSILON) << msg; } } @@ -334,8 +324,8 @@ void CUDAWriteReadMPI1D(const std::string mode) // cuda simulation buffer float *gpuSimData = nullptr; cudaMalloc(&gpuSimData, Nx * sizeof(float)); - cudaMemcpy(gpuSimData, ((float *)&r32s[0] + (Nx * mpiRank)), - Nx * sizeof(float), cudaMemcpyHostToDevice); + cudaMemcpy(gpuSimData, ((float *)&r32s[0] + (Nx * mpiRank)), Nx * sizeof(float), + cudaMemcpyHostToDevice); // host simulation buffer std::vector simData(r32s.begin() + (Nx * mpiRank), r32s.begin() + (Nx * (mpiRank + 1))); @@ -353,8 +343,7 @@ void CUDAWriteReadMPI1D(const std::string mode) const adios2::Dims count{Nx}; auto var_r32 = io.DefineVariable("r32", shape, start, count); - auto var_r32_host = - io.DefineVariable("r32host", shape, start, count); + auto var_r32_host = io.DefineVariable("r32host", shape, start, count); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -363,8 +352,7 @@ void CUDAWriteReadMPI1D(const std::string mode) // Update values in the simulation data cuda_increment(Nx, 1, 0, gpuSimData, INCREMENT); std::transform(simData.begin(), simData.end(), simData.begin(), - std::bind(std::plus(), std::placeholders::_1, - INCREMENT)); + std::bind(std::plus(), std::placeholders::_1, INCREMENT)); bpWriter.BeginStep(); var_r32.SetMemorySpace(adios2::MemorySpace::GPU); @@ -410,19 +398,18 @@ void CUDAWriteReadMPI1D(const std::string mode) var_r32.SetMemorySpace(adios2::MemorySpace::GPU); bpReader.Get(var_r32, gpuSimData, ioMode); bpReader.EndStep(); - cudaMemcpy(r32o.data(), gpuSimData, NxTotal * sizeof(float), - cudaMemcpyDeviceToHost); + cudaMemcpy(r32o.data(), gpuSimData, NxTotal * sizeof(float), cudaMemcpyDeviceToHost); // Remove INCREMENT from each element - std::transform(r32o.begin(), r32o.end(), r32o.begin(), - std::bind(std::minus(), std::placeholders::_1, - (t + 1) * INCREMENT)); + std::transform( + r32o.begin(), r32o.end(), r32o.begin(), + std::bind(std::minus(), std::placeholders::_1, (t + 1) * INCREMENT)); for (size_t i = 0; i < NxTotal; i++) { char msg[1 << 8] = {0}; - snprintf(msg, sizeof(msg), "t=%d i=%zu rank=%d r32o=%f r32s=%f", - t, i, mpiRank, r32o[i], r32s[i]); + snprintf(msg, sizeof(msg), "t=%d i=%zu rank=%d r32o=%f r32s=%f", t, i, mpiRank, + r32o[i], r32s[i]); ASSERT_LT(std::abs(r32o[i] - r32s[i]), EPSILON) << msg; } } @@ -446,8 +433,7 @@ TEST_P(BPWRCUDA, ADIOS2BPCUDADetect) { CUDADetectMemSpace(GetParam()); } TEST_P(BPWRCUDA, ADIOS2BPCUDAWrong) { CUDAWrongMemSpace(); } TEST_P(BPWRCUDA, ADIOS2BPCUDAMemSel) { CUDAWriteReadMemorySelection(); } -INSTANTIATE_TEST_SUITE_P(CudaRW, BPWRCUDA, - ::testing::Values("deferred", "sync")); +INSTANTIATE_TEST_SUITE_P(CudaRW, BPWRCUDA, ::testing::Values("deferred", "sync")); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/bp/TestBPWriteReadLocalVariables.cpp b/testing/adios2/engine/bp/TestBPWriteReadLocalVariables.cpp index 8f3d9cf998..0b8093e115 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadLocalVariables.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadLocalVariables.cpp @@ -68,33 +68,21 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) io.DefineVariable("stepsGlobalValue"); io.DefineVariable("stepsGlobalValueString"); - io.DefineVariable("ranksLocalValue", - {adios2::LocalValueDim}); - io.DefineVariable("ranksLocalValueString", - {adios2::LocalValueDim}); - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("ranksLocalValue", {adios2::LocalValueDim}); + io.DefineVariable("ranksLocalValueString", {adios2::LocalValueDim}); + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -106,8 +94,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -115,12 +103,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) const int32_t step32 = static_cast(step); bpWriter.Put("stepsGlobalValue", step32); - bpWriter.Put("stepsGlobalValueString", - std::to_string(step)); + bpWriter.Put("stepsGlobalValueString", std::to_string(step)); bpWriter.Put("ranksLocalValue", mpiRank); - bpWriter.Put("ranksLocalValueString", - std::to_string(mpiRank)); + bpWriter.Put("ranksLocalValueString", std::to_string(mpiRank)); bpWriter.Put("i8", currentTestData.I8.data()); bpWriter.Put("i16", currentTestData.I16.data()); @@ -132,10 +118,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) bpWriter.Put("u64", currentTestData.U64.data()); bpWriter.Put("r32", currentTestData.R32.data()); bpWriter.Put("r64", currentTestData.R64.data()); - bpWriter.Put>("cr32", - currentTestData.CR32.data()); - bpWriter.Put>("cr64", - currentTestData.CR64.data()); + bpWriter.Put>("cr32", currentTestData.CR32.data()); + bpWriter.Put>("cr64", currentTestData.CR64.data()); bpWriter.EndStep(); } @@ -173,12 +157,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); - auto var_StepsGlobalValue = - io.InquireVariable("stepsGlobalValue"); + auto var_StepsGlobalValue = io.InquireVariable("stepsGlobalValue"); auto var_StepsGlobalValueString = io.InquireVariable("stepsGlobalValueString"); - auto var_RanksLocalValue = - io.InquireVariable("ranksLocalValue"); + auto var_RanksLocalValue = io.InquireVariable("ranksLocalValue"); auto var_RanksLocalValueString = io.InquireVariable("ranksLocalValueString"); @@ -197,32 +179,25 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) // Global value EXPECT_TRUE(var_StepsGlobalValue); - EXPECT_EQ(var_StepsGlobalValue.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValue.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValue.Shape().size(), 0); - EXPECT_EQ(var_StepsGlobalValue.Min(), - static_cast(currentStep)); - EXPECT_EQ(var_StepsGlobalValue.Max(), - static_cast(currentStep)); + EXPECT_EQ(var_StepsGlobalValue.Min(), static_cast(currentStep)); + EXPECT_EQ(var_StepsGlobalValue.Max(), static_cast(currentStep)); int32_t stepsGlobalValueData; - bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, - adios2::Mode::Sync); + bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, adios2::Mode::Sync); EXPECT_EQ(stepsGlobalValueData, static_cast(currentStep)); EXPECT_TRUE(var_StepsGlobalValueString); - EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValueString.Shape().size(), 0); std::string stepsGlobalValueStringDataString; - bpReader.Get(var_StepsGlobalValueString, - stepsGlobalValueStringDataString, adios2::Mode::Sync); - EXPECT_EQ(stepsGlobalValueStringDataString, - std::to_string(currentStep)); + bpReader.Get(var_StepsGlobalValueString, stepsGlobalValueStringDataString, + adios2::Mode::Sync); + EXPECT_EQ(stepsGlobalValueStringDataString, std::to_string(currentStep)); // Local values will be read as 1D GlobalArrays EXPECT_TRUE(var_RanksLocalValue); - EXPECT_EQ(var_RanksLocalValue.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValue.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Shape().size(), 1); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); EXPECT_EQ(var_RanksLocalValue.Min(), 0); @@ -236,13 +211,11 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) } EXPECT_TRUE(var_RanksLocalValueString); - EXPECT_EQ(var_RanksLocalValueString.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValueString.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Shape().size(), 1); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); std::vector rankLocalValueDataString; - bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, - adios2::Mode::Sync); + bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, adios2::Mode::Sync); EXPECT_EQ(rankLocalValueData.size(), mpiSize); for (size_t r = 0; r < rankLocalValueData.size(); ++r) { @@ -350,8 +323,7 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) bpReader.PerformGets(); SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(currentStep), - static_cast(b), mpiSize); + m_TestData, static_cast(currentStep), static_cast(b), mpiSize); for (size_t i = 0; i < Nx; ++i) { @@ -465,33 +437,21 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) io.DefineVariable("stepsGlobalValue"); io.DefineVariable("stepsGlobalValueString"); - io.DefineVariable("ranksLocalValue", - {adios2::LocalValueDim}); - io.DefineVariable("ranksLocalValueString", - {adios2::LocalValueDim}); - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("ranksLocalValue", {adios2::LocalValueDim}); + io.DefineVariable("ranksLocalValueString", {adios2::LocalValueDim}); + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -503,8 +463,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -512,12 +472,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) const int32_t step32 = static_cast(step); bpWriter.Put("stepsGlobalValue", step32); - bpWriter.Put("stepsGlobalValueString", - std::to_string(step)); + bpWriter.Put("stepsGlobalValueString", std::to_string(step)); bpWriter.Put("ranksLocalValue", mpiRank); - bpWriter.Put("ranksLocalValueString", - std::to_string(mpiRank)); + bpWriter.Put("ranksLocalValueString", std::to_string(mpiRank)); bpWriter.Put("i8", currentTestData.I8.data()); bpWriter.Put("i16", currentTestData.I16.data()); @@ -529,10 +487,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) bpWriter.Put("u64", currentTestData.U64.data()); bpWriter.Put("r32", currentTestData.R32.data()); bpWriter.Put("r64", currentTestData.R64.data()); - bpWriter.Put>("cr32", - currentTestData.CR32.data()); - bpWriter.Put>("cr64", - currentTestData.CR64.data()); + bpWriter.Put>("cr32", currentTestData.CR32.data()); + bpWriter.Put>("cr64", currentTestData.CR64.data()); bpWriter.EndStep(); } @@ -570,12 +526,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); - auto var_StepsGlobalValue = - io.InquireVariable("stepsGlobalValue"); + auto var_StepsGlobalValue = io.InquireVariable("stepsGlobalValue"); auto var_StepsGlobalValueString = io.InquireVariable("stepsGlobalValueString"); - auto var_RanksLocalValue = - io.InquireVariable("ranksLocalValue"); + auto var_RanksLocalValue = io.InquireVariable("ranksLocalValue"); auto var_RanksLocalValueString = io.InquireVariable("ranksLocalValueString"); @@ -594,32 +548,25 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) // Global value EXPECT_TRUE(var_StepsGlobalValue); - EXPECT_EQ(var_StepsGlobalValue.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValue.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValue.Shape().size(), 0); - EXPECT_EQ(var_StepsGlobalValue.Min(), - static_cast(currentStep)); - EXPECT_EQ(var_StepsGlobalValue.Max(), - static_cast(currentStep)); + EXPECT_EQ(var_StepsGlobalValue.Min(), static_cast(currentStep)); + EXPECT_EQ(var_StepsGlobalValue.Max(), static_cast(currentStep)); int32_t stepsGlobalValueData; - bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, - adios2::Mode::Sync); + bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, adios2::Mode::Sync); EXPECT_EQ(stepsGlobalValueData, static_cast(currentStep)); EXPECT_TRUE(var_StepsGlobalValueString); - EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValueString.Shape().size(), 0); std::string stepsGlobalValueStringDataString; - bpReader.Get(var_StepsGlobalValueString, - stepsGlobalValueStringDataString, adios2::Mode::Sync); - EXPECT_EQ(stepsGlobalValueStringDataString, - std::to_string(currentStep)); + bpReader.Get(var_StepsGlobalValueString, stepsGlobalValueStringDataString, + adios2::Mode::Sync); + EXPECT_EQ(stepsGlobalValueStringDataString, std::to_string(currentStep)); // Local values are read as 1D Global Arrays EXPECT_TRUE(var_RanksLocalValue); - EXPECT_EQ(var_RanksLocalValue.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValue.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); EXPECT_EQ(var_RanksLocalValue.Min(), 0); EXPECT_EQ(var_RanksLocalValue.Max(), mpiSize - 1); @@ -632,12 +579,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) } EXPECT_TRUE(var_RanksLocalValueString); - EXPECT_EQ(var_RanksLocalValueString.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValueString.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); std::vector rankLocalValueDataString; - bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, - adios2::Mode::Sync); + bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, adios2::Mode::Sync); EXPECT_EQ(rankLocalValueData.size(), mpiSize); for (size_t r = 0; r < rankLocalValueData.size(); ++r) { @@ -753,8 +698,7 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) bpReader.PerformGets(); SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(currentStep), - static_cast(b), mpiSize); + m_TestData, static_cast(currentStep), static_cast(b), mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { @@ -868,33 +812,21 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D4x2) io.DefineVariable("stepsGlobalValue"); io.DefineVariable("stepsGlobalValueString"); - io.DefineVariable("ranksLocalValue", - {adios2::LocalValueDim}); - io.DefineVariable("ranksLocalValueString", - {adios2::LocalValueDim}); - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("ranksLocalValue", {adios2::LocalValueDim}); + io.DefineVariable("ranksLocalValueString", {adios2::LocalValueDim}); + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -906,20 +838,18 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D4x2) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); bpWriter.BeginStep(); const int32_t step32 = static_cast(step); bpWriter.Put("stepsGlobalValue", step32); - bpWriter.Put("stepsGlobalValueString", - std::to_string(step)); + bpWriter.Put("stepsGlobalValueString", std::to_string(step)); bpWriter.Put("ranksLocalValue", mpiRank); - bpWriter.Put("ranksLocalValueString", - std::to_string(mpiRank)); + bpWriter.Put("ranksLocalValueString", std::to_string(mpiRank)); bpWriter.Put("i8", currentTestData.I8.data()); bpWriter.Put("i16", currentTestData.I16.data()); @@ -931,10 +861,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D4x2) bpWriter.Put("u64", currentTestData.U64.data()); bpWriter.Put("r32", currentTestData.R32.data()); bpWriter.Put("r64", currentTestData.R64.data()); - bpWriter.Put>("cr32", - currentTestData.CR32.data()); - bpWriter.Put>("cr64", - currentTestData.CR64.data()); + bpWriter.Put>("cr32", currentTestData.CR32.data()); + bpWriter.Put>("cr64", currentTestData.CR64.data()); bpWriter.EndStep(); } @@ -972,12 +900,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D4x2) const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); - auto var_StepsGlobalValue = - io.InquireVariable("stepsGlobalValue"); + auto var_StepsGlobalValue = io.InquireVariable("stepsGlobalValue"); auto var_StepsGlobalValueString = io.InquireVariable("stepsGlobalValueString"); - auto var_RanksLocalValue = - io.InquireVariable("ranksLocalValue"); + auto var_RanksLocalValue = io.InquireVariable("ranksLocalValue"); auto var_RanksLocalValueString = io.InquireVariable("ranksLocalValueString"); @@ -996,32 +922,25 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D4x2) // Global value EXPECT_TRUE(var_StepsGlobalValue); - EXPECT_EQ(var_StepsGlobalValue.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValue.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValue.Shape().size(), 0); - EXPECT_EQ(var_StepsGlobalValue.Min(), - static_cast(currentStep)); - EXPECT_EQ(var_StepsGlobalValue.Max(), - static_cast(currentStep)); + EXPECT_EQ(var_StepsGlobalValue.Min(), static_cast(currentStep)); + EXPECT_EQ(var_StepsGlobalValue.Max(), static_cast(currentStep)); int32_t stepsGlobalValueData; - bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, - adios2::Mode::Sync); + bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, adios2::Mode::Sync); EXPECT_EQ(stepsGlobalValueData, static_cast(currentStep)); EXPECT_TRUE(var_StepsGlobalValueString); - EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValueString.Shape().size(), 0); std::string stepsGlobalValueStringDataString; - bpReader.Get(var_StepsGlobalValueString, - stepsGlobalValueStringDataString, adios2::Mode::Sync); - EXPECT_EQ(stepsGlobalValueStringDataString, - std::to_string(currentStep)); + bpReader.Get(var_StepsGlobalValueString, stepsGlobalValueStringDataString, + adios2::Mode::Sync); + EXPECT_EQ(stepsGlobalValueStringDataString, std::to_string(currentStep)); // Local values are read as 1D Global Arrays EXPECT_TRUE(var_RanksLocalValue); - EXPECT_EQ(var_RanksLocalValue.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValue.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Shape().size(), 1); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); EXPECT_EQ(var_RanksLocalValue.Min(), 0); @@ -1035,13 +954,11 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D4x2) } EXPECT_TRUE(var_RanksLocalValueString); - EXPECT_EQ(var_RanksLocalValueString.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValueString.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Shape().size(), 1); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); std::vector rankLocalValueDataString; - bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, - adios2::Mode::Sync); + bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, adios2::Mode::Sync); EXPECT_EQ(rankLocalValueData.size(), mpiSize); for (size_t r = 0; r < rankLocalValueData.size(); ++r) { @@ -1157,8 +1074,7 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D4x2) bpReader.PerformGets(); SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(currentStep), - static_cast(b), mpiSize); + m_TestData, static_cast(currentStep), static_cast(b), mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { @@ -1273,33 +1189,21 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) io.DefineVariable("stepsGlobalValue"); io.DefineVariable("stepsGlobalValueString"); - io.DefineVariable("ranksLocalValue", - {adios2::LocalValueDim}); - io.DefineVariable("ranksLocalValueString", - {adios2::LocalValueDim}); - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("ranksLocalValue", {adios2::LocalValueDim}); + io.DefineVariable("ranksLocalValueString", {adios2::LocalValueDim}); + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -1311,8 +1215,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -1320,12 +1224,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) const int32_t step32 = static_cast(step); bpWriter.Put("stepsGlobalValue", step32); - bpWriter.Put("stepsGlobalValueString", - std::to_string(step)); + bpWriter.Put("stepsGlobalValueString", std::to_string(step)); bpWriter.Put("ranksLocalValue", mpiRank); - bpWriter.Put("ranksLocalValueString", - std::to_string(mpiRank)); + bpWriter.Put("ranksLocalValueString", std::to_string(mpiRank)); bpWriter.Put("i8", currentTestData.I8.data()); bpWriter.Put("i16", currentTestData.I16.data()); @@ -1337,10 +1239,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) bpWriter.Put("u64", currentTestData.U64.data()); bpWriter.Put("r32", currentTestData.R32.data()); bpWriter.Put("r64", currentTestData.R64.data()); - bpWriter.Put>("cr32", - currentTestData.CR32.data()); - bpWriter.Put>("cr64", - currentTestData.CR64.data()); + bpWriter.Put>("cr32", currentTestData.CR32.data()); + bpWriter.Put>("cr64", currentTestData.CR64.data()); bpWriter.EndStep(); } @@ -1355,8 +1255,7 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); std::vector I8; std::vector I16; @@ -1373,14 +1272,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) size_t t = 0; - auto var_StepsGlobalValue = - io.InquireVariable("stepsGlobalValue"); - auto var_StepsGlobalValueString = - io.InquireVariable("stepsGlobalValueString"); - auto var_RanksLocalValue = - io.InquireVariable("ranksLocalValue"); - auto var_RanksLocalValueString = - io.InquireVariable("ranksLocalValueString"); + auto var_StepsGlobalValue = io.InquireVariable("stepsGlobalValue"); + auto var_StepsGlobalValueString = io.InquireVariable("stepsGlobalValueString"); + auto var_RanksLocalValue = io.InquireVariable("ranksLocalValue"); + auto var_RanksLocalValueString = io.InquireVariable("ranksLocalValueString"); auto var_i8 = io.InquireVariable("i8"); auto var_i16 = io.InquireVariable("i16"); @@ -1399,14 +1294,11 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) EXPECT_EQ(var_StepsGlobalValue.Max(), static_cast(NSteps - 1)); // Read all steps at once - var_StepsGlobalValue.SetStepSelection( - {0, var_StepsGlobalValue.Steps()}); - var_StepsGlobalValueString.SetStepSelection( - {0, var_StepsGlobalValueString.Steps()}); + var_StepsGlobalValue.SetStepSelection({0, var_StepsGlobalValue.Steps()}); + var_StepsGlobalValueString.SetStepSelection({0, var_StepsGlobalValueString.Steps()}); var_RanksLocalValue.SetStepSelection({0, var_RanksLocalValue.Steps()}); - var_RanksLocalValueString.SetStepSelection( - {0, var_RanksLocalValueString.Steps()}); + var_RanksLocalValueString.SetStepSelection({0, var_RanksLocalValueString.Steps()}); var_i8.SetStepSelection({0, var_i8.Steps()}); var_i16.SetStepSelection({0, var_i16.Steps()}); @@ -1460,9 +1352,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) for (size_t s = 0; s < NSteps; ++s) { - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, static_cast(s), - static_cast(b), mpiSize); + SmallTestData currentTestData = generateNewSmallTestData( + m_TestData, static_cast(s), static_cast(b), mpiSize); for (size_t i = 0; i < Nx; ++i) { @@ -1476,18 +1367,15 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) } if (var_i16) { - ASSERT_EQ(I16[s * Nx + i], currentTestData.I16[i]) - << msg; + ASSERT_EQ(I16[s * Nx + i], currentTestData.I16[i]) << msg; } if (var_i32) { - EXPECT_EQ(I32[s * Nx + i], currentTestData.I32[i]) - << msg; + EXPECT_EQ(I32[s * Nx + i], currentTestData.I32[i]) << msg; } if (var_i64) { - EXPECT_EQ(I64[s * Nx + i], currentTestData.I64[i]) - << msg; + EXPECT_EQ(I64[s * Nx + i], currentTestData.I64[i]) << msg; } if (var_u8) @@ -1496,39 +1384,32 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) } if (var_u16) { - EXPECT_EQ(U16[s * Nx + i], currentTestData.U16[i]) - << msg; + EXPECT_EQ(U16[s * Nx + i], currentTestData.U16[i]) << msg; } if (var_u32) { - EXPECT_EQ(U32[s * Nx + i], currentTestData.U32[i]) - << msg; + EXPECT_EQ(U32[s * Nx + i], currentTestData.U32[i]) << msg; } if (var_u64) { - EXPECT_EQ(U64[s * Nx + i], currentTestData.U64[i]) - << msg; + EXPECT_EQ(U64[s * Nx + i], currentTestData.U64[i]) << msg; } if (var_r32) { - EXPECT_EQ(R32[s * Nx + i], currentTestData.R32[i]) - << msg; + EXPECT_EQ(R32[s * Nx + i], currentTestData.R32[i]) << msg; } if (var_r64) { - EXPECT_EQ(R64[s * Nx + i], currentTestData.R64[i]) - << msg; + EXPECT_EQ(R64[s * Nx + i], currentTestData.R64[i]) << msg; } if (var_cr32) { - EXPECT_EQ(CR32[s * Nx + i], currentTestData.CR32[i]) - << msg; + EXPECT_EQ(CR32[s * Nx + i], currentTestData.CR32[i]) << msg; } if (var_cr64) { - EXPECT_EQ(CR64[s * Nx + i], currentTestData.CR64[i]) - << msg; + EXPECT_EQ(CR64[s * Nx + i], currentTestData.CR64[i]) << msg; } } } @@ -1581,33 +1462,21 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DBlockInfo) io.DefineVariable("stepsGlobalValue"); io.DefineVariable("stepsGlobalValueString"); - io.DefineVariable("ranksLocalValue", - {adios2::LocalValueDim}); - io.DefineVariable("ranksLocalValueString", - {adios2::LocalValueDim}); - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("ranksLocalValue", {adios2::LocalValueDim}); + io.DefineVariable("ranksLocalValueString", {adios2::LocalValueDim}); + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -1619,8 +1488,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DBlockInfo) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -1628,12 +1497,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DBlockInfo) const int32_t step32 = static_cast(step); bpWriter.Put("stepsGlobalValue", step32); - bpWriter.Put("stepsGlobalValueString", - std::to_string(step)); + bpWriter.Put("stepsGlobalValueString", std::to_string(step)); bpWriter.Put("ranksLocalValue", mpiRank); - bpWriter.Put("ranksLocalValueString", - std::to_string(mpiRank)); + bpWriter.Put("ranksLocalValueString", std::to_string(mpiRank)); bpWriter.Put("i8", currentTestData.I8.data()); bpWriter.Put("i16", currentTestData.I16.data()); @@ -1645,10 +1512,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DBlockInfo) bpWriter.Put("u64", currentTestData.U64.data()); bpWriter.Put("r32", currentTestData.R32.data()); bpWriter.Put("r64", currentTestData.R64.data()); - bpWriter.Put>("cr32", - currentTestData.CR32.data()); - bpWriter.Put>("cr64", - currentTestData.CR64.data()); + bpWriter.Put>("cr32", currentTestData.CR32.data()); + bpWriter.Put>("cr64", currentTestData.CR64.data()); bpWriter.EndStep(); } @@ -1662,17 +1527,12 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DBlockInfo) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); - auto var_StepsGlobalValue = - io.InquireVariable("stepsGlobalValue"); - auto var_StepsGlobalValueString = - io.InquireVariable("stepsGlobalValueString"); - auto var_RanksLocalValue = - io.InquireVariable("ranksLocalValue"); - auto var_RanksLocalValueString = - io.InquireVariable("ranksLocalValueString"); + auto var_StepsGlobalValue = io.InquireVariable("stepsGlobalValue"); + auto var_StepsGlobalValueString = io.InquireVariable("stepsGlobalValueString"); + auto var_RanksLocalValue = io.InquireVariable("ranksLocalValue"); + auto var_RanksLocalValueString = io.InquireVariable("ranksLocalValueString"); auto var_i8 = io.InquireVariable("i8"); auto var_i16 = io.InquireVariable("i16"); @@ -1706,8 +1566,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DBlockInfo) for (size_t s = 0; s < NSteps; ++s) { - const std::vector::Info> - i16_blocks = bpReader.BlocksInfo(var_RanksLocalValue, s); + const std::vector::Info> i16_blocks = + bpReader.BlocksInfo(var_RanksLocalValue, s); EXPECT_EQ(i16_blocks.size(), mpiSize); @@ -1772,8 +1632,7 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DSubFile) const adios2::Dims start{}; const adios2::Dims count{Nx0}; - auto var_i32 = - io.DefineVariable("i32", shape, start, count, false); + auto var_i32 = io.DefineVariable("i32", shape, start, count, false); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); bpWriter.Put(var_i32, data[0].data()); @@ -1787,8 +1646,7 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DSubFile) adios2::IO io = adios.DeclareIO("ReadIO"); // each rank opens a local subfile - const std::string subFileName = - fname + ".dir/" + fname + "." + std::to_string(mpiRank); + const std::string subFileName = fname + ".dir/" + fname + "." + std::to_string(mpiRank); // requires using MPI_COMM_SELF so metadata won't be shared when reading // each subfile independently @@ -1796,8 +1654,7 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DSubFile) adios2::Engine bpReader = io.Open(subFileName, adios2::Mode::ReadRandomAccess, MPI_COMM_SELF); #else - adios2::Engine bpReader = - io.Open(subFileName, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(subFileName, adios2::Mode::ReadRandomAccess); #endif auto var_i32 = io.InquireVariable("i32"); @@ -1806,8 +1663,7 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DSubFile) EXPECT_EQ(var_i32.Shape().size(), 0); EXPECT_EQ(var_i32.Start().size(), 0); - std::vector::Info> info = - bpReader.BlocksInfo(var_i32, 0); + std::vector::Info> info = bpReader.BlocksInfo(var_i32, 0); EXPECT_EQ(info[0].Count[0], Nx0) << " rank= " << mpiRank; ASSERT_EQ(info[1].Count[0], Nx1) << " rank= " << mpiRank; @@ -1886,11 +1742,9 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2DChangeCount) { adios2::IO io = adios.DeclareIO("ReaderIO"); #if ADIOS2_USE_MPI - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess, MPI_COMM_SELF); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess, MPI_COMM_SELF); #else - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); #endif auto var_r32 = io.InquireVariable("r32"); diff --git a/testing/adios2/engine/bp/TestBPWriteReadLocalVariablesSel.cpp b/testing/adios2/engine/bp/TestBPWriteReadLocalVariablesSel.cpp index e1119d86a5..558e55014a 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadLocalVariablesSel.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadLocalVariablesSel.cpp @@ -67,33 +67,21 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DSel) io.DefineVariable("stepsGlobalValue"); io.DefineVariable("stepsGlobalValueString"); - io.DefineVariable("ranksLocalValue", - {adios2::LocalValueDim}); - io.DefineVariable("ranksLocalValueString", - {adios2::LocalValueDim}); - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("ranksLocalValue", {adios2::LocalValueDim}); + io.DefineVariable("ranksLocalValueString", {adios2::LocalValueDim}); + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -105,8 +93,8 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DSel) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -114,12 +102,10 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DSel) const int32_t step32 = static_cast(step); bpWriter.Put("stepsGlobalValue", step32); - bpWriter.Put("stepsGlobalValueString", - std::to_string(step)); + bpWriter.Put("stepsGlobalValueString", std::to_string(step)); bpWriter.Put("ranksLocalValue", mpiRank); - bpWriter.Put("ranksLocalValueString", - std::to_string(mpiRank)); + bpWriter.Put("ranksLocalValueString", std::to_string(mpiRank)); bpWriter.Put("i8", currentTestData.I8.data()); bpWriter.Put("i16", currentTestData.I16.data()); @@ -131,10 +117,8 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DSel) bpWriter.Put("u64", currentTestData.U64.data()); bpWriter.Put("r32", currentTestData.R32.data()); bpWriter.Put("r64", currentTestData.R64.data()); - bpWriter.Put>("cr32", - currentTestData.CR32.data()); - bpWriter.Put>("cr64", - currentTestData.CR64.data()); + bpWriter.Put>("cr32", currentTestData.CR32.data()); + bpWriter.Put>("cr64", currentTestData.CR64.data()); bpWriter.EndStep(); } @@ -172,12 +156,10 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DSel) const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); - auto var_StepsGlobalValue = - io.InquireVariable("stepsGlobalValue"); + auto var_StepsGlobalValue = io.InquireVariable("stepsGlobalValue"); auto var_StepsGlobalValueString = io.InquireVariable("stepsGlobalValueString"); - auto var_RanksLocalValue = - io.InquireVariable("ranksLocalValue"); + auto var_RanksLocalValue = io.InquireVariable("ranksLocalValue"); auto var_RanksLocalValueString = io.InquireVariable("ranksLocalValueString"); @@ -196,35 +178,27 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DSel) // Global value EXPECT_TRUE(var_StepsGlobalValue); - EXPECT_EQ(var_StepsGlobalValue.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValue.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValue.Shape().size(), 0); - EXPECT_EQ(var_StepsGlobalValue.Min(), - static_cast(currentStep)); - EXPECT_EQ(var_StepsGlobalValue.Max(), - static_cast(currentStep)); + EXPECT_EQ(var_StepsGlobalValue.Min(), static_cast(currentStep)); + EXPECT_EQ(var_StepsGlobalValue.Max(), static_cast(currentStep)); int32_t stepsGlobalValueData; - bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, - adios2::Mode::Sync); + bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, adios2::Mode::Sync); EXPECT_EQ(stepsGlobalValueData, currentStep); EXPECT_TRUE(var_StepsGlobalValueString); - EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValueString.Shape().size(), 0); std::string stepsGlobalValueStringDataString; - bpReader.Get(var_StepsGlobalValueString, - stepsGlobalValueStringDataString, adios2::Mode::Sync); - EXPECT_EQ(stepsGlobalValueStringDataString, - std::to_string(currentStep)); + bpReader.Get(var_StepsGlobalValueString, stepsGlobalValueStringDataString, + adios2::Mode::Sync); + EXPECT_EQ(stepsGlobalValueStringDataString, std::to_string(currentStep)); // Local values will be read as 1D GlobalArrays EXPECT_TRUE(var_RanksLocalValue); - EXPECT_EQ(var_RanksLocalValue.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValue.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Shape().size(), 1); - EXPECT_EQ(var_RanksLocalValue.Shape()[0], - static_cast(mpiSize)); + EXPECT_EQ(var_RanksLocalValue.Shape()[0], static_cast(mpiSize)); EXPECT_EQ(var_RanksLocalValue.Min(), 0); EXPECT_EQ(var_RanksLocalValue.Max(), mpiSize - 1); std::vector rankLocalValueData; @@ -236,13 +210,11 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DSel) } EXPECT_TRUE(var_RanksLocalValueString); - EXPECT_EQ(var_RanksLocalValueString.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValueString.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Shape().size(), 1); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); std::vector rankLocalValueDataString; - bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, - adios2::Mode::Sync); + bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, adios2::Mode::Sync); EXPECT_EQ(rankLocalValueData.size(), mpiSize); for (size_t r = 0; r < rankLocalValueData.size(); ++r) { @@ -317,8 +289,7 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DSel) EXPECT_EQ(var_cr64.BlockID(), b); SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(currentStep), - static_cast(b), mpiSize); + m_TestData, static_cast(currentStep), static_cast(b), mpiSize); // loop selections for (size_t s = 0; s < Nx; ++s) @@ -406,18 +377,15 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DSel) if (var_i16) { - EXPECT_EQ(I16[i - s], currentTestData.I16[i]) - << msg; + EXPECT_EQ(I16[i - s], currentTestData.I16[i]) << msg; } if (var_i32) { - EXPECT_EQ(I32[i - s], currentTestData.I32[i]) - << msg; + EXPECT_EQ(I32[i - s], currentTestData.I32[i]) << msg; } if (var_i64) { - EXPECT_EQ(I64[i - s], currentTestData.I64[i]) - << msg; + EXPECT_EQ(I64[i - s], currentTestData.I64[i]) << msg; } if (var_u8) @@ -426,39 +394,32 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DSel) } if (var_u16) { - EXPECT_EQ(U16[i - s], currentTestData.U16[i]) - << msg; + EXPECT_EQ(U16[i - s], currentTestData.U16[i]) << msg; } if (var_u32) { - EXPECT_EQ(U32[i - s], currentTestData.U32[i]) - << msg; + EXPECT_EQ(U32[i - s], currentTestData.U32[i]) << msg; } if (var_u64) { - EXPECT_EQ(U64[i - s], currentTestData.U64[i]) - << msg; + EXPECT_EQ(U64[i - s], currentTestData.U64[i]) << msg; } if (var_r32) { - EXPECT_EQ(R32[i - s], currentTestData.R32[i]) - << msg; + EXPECT_EQ(R32[i - s], currentTestData.R32[i]) << msg; } if (var_r64) { - EXPECT_EQ(R64[i - s], currentTestData.R64[i]) - << msg; + EXPECT_EQ(R64[i - s], currentTestData.R64[i]) << msg; } if (var_cr32) { - EXPECT_EQ(CR32[i - s], currentTestData.CR32[i]) - << msg; + EXPECT_EQ(CR32[i - s], currentTestData.CR32[i]) << msg; } if (var_cr64) { - EXPECT_EQ(CR64[i - s], currentTestData.CR64[i]) - << msg; + EXPECT_EQ(CR64[i - s], currentTestData.CR64[i]) << msg; } } @@ -518,33 +479,21 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D2x4Sel) io.DefineVariable("stepsGlobalValue"); io.DefineVariable("stepsGlobalValueString"); - io.DefineVariable("ranksLocalValue", - {adios2::LocalValueDim}); - io.DefineVariable("ranksLocalValueString", - {adios2::LocalValueDim}); - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("ranksLocalValue", {adios2::LocalValueDim}); + io.DefineVariable("ranksLocalValueString", {adios2::LocalValueDim}); + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -556,8 +505,8 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D2x4Sel) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -565,12 +514,10 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D2x4Sel) const int32_t step32 = static_cast(step); bpWriter.Put("stepsGlobalValue", step32); - bpWriter.Put("stepsGlobalValueString", - std::to_string(step)); + bpWriter.Put("stepsGlobalValueString", std::to_string(step)); bpWriter.Put("ranksLocalValue", mpiRank); - bpWriter.Put("ranksLocalValueString", - std::to_string(mpiRank)); + bpWriter.Put("ranksLocalValueString", std::to_string(mpiRank)); bpWriter.Put("i8", currentTestData.I8.data()); bpWriter.Put("i16", currentTestData.I16.data()); @@ -582,10 +529,8 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D2x4Sel) bpWriter.Put("u64", currentTestData.U64.data()); bpWriter.Put("r32", currentTestData.R32.data()); bpWriter.Put("r64", currentTestData.R64.data()); - bpWriter.Put>("cr32", - currentTestData.CR32.data()); - bpWriter.Put>("cr64", - currentTestData.CR64.data()); + bpWriter.Put>("cr32", currentTestData.CR32.data()); + bpWriter.Put>("cr64", currentTestData.CR64.data()); bpWriter.EndStep(); } @@ -623,12 +568,10 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D2x4Sel) const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); - auto var_StepsGlobalValue = - io.InquireVariable("stepsGlobalValue"); + auto var_StepsGlobalValue = io.InquireVariable("stepsGlobalValue"); auto var_StepsGlobalValueString = io.InquireVariable("stepsGlobalValueString"); - auto var_RanksLocalValue = - io.InquireVariable("ranksLocalValue"); + auto var_RanksLocalValue = io.InquireVariable("ranksLocalValue"); auto var_RanksLocalValueString = io.InquireVariable("ranksLocalValueString"); @@ -647,32 +590,25 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D2x4Sel) // Global value EXPECT_TRUE(var_StepsGlobalValue); - EXPECT_EQ(var_StepsGlobalValue.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValue.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValue.Shape().size(), 0); - EXPECT_EQ(var_StepsGlobalValue.Min(), - static_cast(currentStep)); - EXPECT_EQ(var_StepsGlobalValue.Max(), - static_cast(currentStep)); + EXPECT_EQ(var_StepsGlobalValue.Min(), static_cast(currentStep)); + EXPECT_EQ(var_StepsGlobalValue.Max(), static_cast(currentStep)); int32_t stepsGlobalValueData; - bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, - adios2::Mode::Sync); + bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, adios2::Mode::Sync); EXPECT_EQ(stepsGlobalValueData, currentStep); EXPECT_TRUE(var_StepsGlobalValueString); - EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValueString.Shape().size(), 0); std::string stepsGlobalValueStringDataString; - bpReader.Get(var_StepsGlobalValueString, - stepsGlobalValueStringDataString, adios2::Mode::Sync); - EXPECT_EQ(stepsGlobalValueStringDataString, - std::to_string(currentStep)); + bpReader.Get(var_StepsGlobalValueString, stepsGlobalValueStringDataString, + adios2::Mode::Sync); + EXPECT_EQ(stepsGlobalValueStringDataString, std::to_string(currentStep)); // Local values are read as 1D Global Arrays EXPECT_TRUE(var_RanksLocalValue); - EXPECT_EQ(var_RanksLocalValue.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValue.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); EXPECT_EQ(var_RanksLocalValue.Min(), 0); EXPECT_EQ(var_RanksLocalValue.Max(), mpiSize - 1); @@ -685,12 +621,10 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D2x4Sel) } EXPECT_TRUE(var_RanksLocalValueString); - EXPECT_EQ(var_RanksLocalValueString.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValueString.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); std::vector rankLocalValueDataString; - bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, - adios2::Mode::Sync); + bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, adios2::Mode::Sync); EXPECT_EQ(rankLocalValueData.size(), mpiSize); for (size_t r = 0; r < rankLocalValueData.size(); ++r) { @@ -764,8 +698,7 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D2x4Sel) EXPECT_EQ(var_cr64.BlockID(), b); SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(currentStep), - static_cast(b), mpiSize); + m_TestData, static_cast(currentStep), static_cast(b), mpiSize); // selection loop for (size_t j = 0; j < Ny; ++j) @@ -871,95 +804,79 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D2x4Sel) for (size_t p = i; p < Nx; ++p) { std::stringstream ss; - ss << "t=" << t << " q=" << q << " p=" << p - << " rank=" << mpiRank; + ss << "t=" << t << " q=" << q << " p=" << p << " rank=" << mpiRank; std::string msg = ss.str(); - const size_t indexSel = - (q - j) * (Nx - i) + (p - i); + const size_t indexSel = (q - j) * (Nx - i) + (p - i); const size_t indexBlock = q * Nx + p; if (var_i8) { - EXPECT_EQ(I8[indexSel], - currentTestData.I8[indexBlock]) - << msg; + EXPECT_EQ(I8[indexSel], currentTestData.I8[indexBlock]) << msg; } if (var_i16) { - EXPECT_EQ(I16[indexSel], - currentTestData.I16[indexBlock]) + EXPECT_EQ(I16[indexSel], currentTestData.I16[indexBlock]) << msg; } if (var_i32) { - EXPECT_EQ(I32[indexSel], - currentTestData.I32[indexBlock]) + EXPECT_EQ(I32[indexSel], currentTestData.I32[indexBlock]) << msg; } if (var_i64) { - EXPECT_EQ(I64[indexSel], - currentTestData.I64[indexBlock]) + EXPECT_EQ(I64[indexSel], currentTestData.I64[indexBlock]) << msg; } if (var_u8) { - EXPECT_EQ(U8[indexSel], - currentTestData.U8[indexBlock]) - << msg; + EXPECT_EQ(U8[indexSel], currentTestData.U8[indexBlock]) << msg; } if (var_u16) { - EXPECT_EQ(U16[indexSel], - currentTestData.U16[indexBlock]) + EXPECT_EQ(U16[indexSel], currentTestData.U16[indexBlock]) << msg; } if (var_u32) { - EXPECT_EQ(U32[indexSel], - currentTestData.U32[indexBlock]) + EXPECT_EQ(U32[indexSel], currentTestData.U32[indexBlock]) << msg; } if (var_u64) { - EXPECT_EQ(U64[indexSel], - currentTestData.U64[indexBlock]) + EXPECT_EQ(U64[indexSel], currentTestData.U64[indexBlock]) << msg; } if (var_r32) { - EXPECT_EQ(R32[indexSel], - currentTestData.R32[indexBlock]) + EXPECT_EQ(R32[indexSel], currentTestData.R32[indexBlock]) << msg; } if (var_r64) { - EXPECT_EQ(R64[indexSel], - currentTestData.R64[indexBlock]) + EXPECT_EQ(R64[indexSel], currentTestData.R64[indexBlock]) << msg; } if (var_cr32) { - EXPECT_EQ(CR32[indexSel], - currentTestData.CR32[indexBlock]) + EXPECT_EQ(CR32[indexSel], currentTestData.CR32[indexBlock]) << msg; } if (var_cr64) { - EXPECT_EQ(CR64[indexSel], - currentTestData.CR64[indexBlock]) + EXPECT_EQ(CR64[indexSel], currentTestData.CR64[indexBlock]) << msg; } } @@ -1021,33 +938,21 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D4x2Sel) io.DefineVariable("stepsGlobalValue"); io.DefineVariable("stepsGlobalValueString"); - io.DefineVariable("ranksLocalValue", - {adios2::LocalValueDim}); - io.DefineVariable("ranksLocalValueString", - {adios2::LocalValueDim}); - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("ranksLocalValue", {adios2::LocalValueDim}); + io.DefineVariable("ranksLocalValueString", {adios2::LocalValueDim}); + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -1059,20 +964,18 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D4x2Sel) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); bpWriter.BeginStep(); const int32_t step32 = static_cast(step); bpWriter.Put("stepsGlobalValue", step32); - bpWriter.Put("stepsGlobalValueString", - std::to_string(step)); + bpWriter.Put("stepsGlobalValueString", std::to_string(step)); bpWriter.Put("ranksLocalValue", mpiRank); - bpWriter.Put("ranksLocalValueString", - std::to_string(mpiRank)); + bpWriter.Put("ranksLocalValueString", std::to_string(mpiRank)); bpWriter.Put("i8", currentTestData.I8.data()); bpWriter.Put("i16", currentTestData.I16.data()); @@ -1084,10 +987,8 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D4x2Sel) bpWriter.Put("u64", currentTestData.U64.data()); bpWriter.Put("r32", currentTestData.R32.data()); bpWriter.Put("r64", currentTestData.R64.data()); - bpWriter.Put>("cr32", - currentTestData.CR32.data()); - bpWriter.Put>("cr64", - currentTestData.CR64.data()); + bpWriter.Put>("cr32", currentTestData.CR32.data()); + bpWriter.Put>("cr64", currentTestData.CR64.data()); bpWriter.EndStep(); } @@ -1125,12 +1026,10 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D4x2Sel) const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); - auto var_StepsGlobalValue = - io.InquireVariable("stepsGlobalValue"); + auto var_StepsGlobalValue = io.InquireVariable("stepsGlobalValue"); auto var_StepsGlobalValueString = io.InquireVariable("stepsGlobalValueString"); - auto var_RanksLocalValue = - io.InquireVariable("ranksLocalValue"); + auto var_RanksLocalValue = io.InquireVariable("ranksLocalValue"); auto var_RanksLocalValueString = io.InquireVariable("ranksLocalValueString"); @@ -1149,32 +1048,25 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D4x2Sel) // Global value EXPECT_TRUE(var_StepsGlobalValue); - EXPECT_EQ(var_StepsGlobalValue.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValue.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValue.Shape().size(), 0); - EXPECT_EQ(var_StepsGlobalValue.Min(), - static_cast(currentStep)); - EXPECT_EQ(var_StepsGlobalValue.Max(), - static_cast(currentStep)); + EXPECT_EQ(var_StepsGlobalValue.Min(), static_cast(currentStep)); + EXPECT_EQ(var_StepsGlobalValue.Max(), static_cast(currentStep)); int32_t stepsGlobalValueData; - bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, - adios2::Mode::Sync); + bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, adios2::Mode::Sync); EXPECT_EQ(stepsGlobalValueData, currentStep); EXPECT_TRUE(var_StepsGlobalValueString); - EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValueString.Shape().size(), 0); std::string stepsGlobalValueStringDataString; - bpReader.Get(var_StepsGlobalValueString, - stepsGlobalValueStringDataString, adios2::Mode::Sync); - EXPECT_EQ(stepsGlobalValueStringDataString, - std::to_string(currentStep)); + bpReader.Get(var_StepsGlobalValueString, stepsGlobalValueStringDataString, + adios2::Mode::Sync); + EXPECT_EQ(stepsGlobalValueStringDataString, std::to_string(currentStep)); // Local values are read as 1D Global Arrays EXPECT_TRUE(var_RanksLocalValue); - EXPECT_EQ(var_RanksLocalValue.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValue.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); EXPECT_EQ(var_RanksLocalValue.Min(), 0); EXPECT_EQ(var_RanksLocalValue.Max(), mpiSize - 1); @@ -1187,12 +1079,10 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D4x2Sel) } EXPECT_TRUE(var_RanksLocalValueString); - EXPECT_EQ(var_RanksLocalValueString.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValueString.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); std::vector rankLocalValueDataString; - bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, - adios2::Mode::Sync); + bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, adios2::Mode::Sync); EXPECT_EQ(rankLocalValueData.size(), mpiSize); for (size_t r = 0; r < rankLocalValueData.size(); ++r) { @@ -1266,8 +1156,7 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D4x2Sel) EXPECT_EQ(var_cr64.BlockID(), b); SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(currentStep), - static_cast(b), mpiSize); + m_TestData, static_cast(currentStep), static_cast(b), mpiSize); // selection loop for (size_t j = 0; j < Ny; ++j) @@ -1373,95 +1262,79 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal2D4x2Sel) for (size_t p = i; p < Nx; ++p) { std::stringstream ss; - ss << "t=" << t << " q=" << q << " p=" << p - << " rank=" << mpiRank; + ss << "t=" << t << " q=" << q << " p=" << p << " rank=" << mpiRank; std::string msg = ss.str(); - const size_t indexSel = - (q - j) * (Nx - i) + (p - i); + const size_t indexSel = (q - j) * (Nx - i) + (p - i); const size_t indexBlock = q * Nx + p; if (var_i8) { - EXPECT_EQ(I8[indexSel], - currentTestData.I8[indexBlock]) - << msg; + EXPECT_EQ(I8[indexSel], currentTestData.I8[indexBlock]) << msg; } if (var_i16) { - EXPECT_EQ(I16[indexSel], - currentTestData.I16[indexBlock]) + EXPECT_EQ(I16[indexSel], currentTestData.I16[indexBlock]) << msg; } if (var_i32) { - EXPECT_EQ(I32[indexSel], - currentTestData.I32[indexBlock]) + EXPECT_EQ(I32[indexSel], currentTestData.I32[indexBlock]) << msg; } if (var_i64) { - EXPECT_EQ(I64[indexSel], - currentTestData.I64[indexBlock]) + EXPECT_EQ(I64[indexSel], currentTestData.I64[indexBlock]) << msg; } if (var_u8) { - EXPECT_EQ(U8[indexSel], - currentTestData.U8[indexBlock]) - << msg; + EXPECT_EQ(U8[indexSel], currentTestData.U8[indexBlock]) << msg; } if (var_u16) { - EXPECT_EQ(U16[indexSel], - currentTestData.U16[indexBlock]) + EXPECT_EQ(U16[indexSel], currentTestData.U16[indexBlock]) << msg; } if (var_u32) { - EXPECT_EQ(U32[indexSel], - currentTestData.U32[indexBlock]) + EXPECT_EQ(U32[indexSel], currentTestData.U32[indexBlock]) << msg; } if (var_u64) { - EXPECT_EQ(U64[indexSel], - currentTestData.U64[indexBlock]) + EXPECT_EQ(U64[indexSel], currentTestData.U64[indexBlock]) << msg; } if (var_r32) { - EXPECT_EQ(R32[indexSel], - currentTestData.R32[indexBlock]) + EXPECT_EQ(R32[indexSel], currentTestData.R32[indexBlock]) << msg; } if (var_r64) { - EXPECT_EQ(R64[indexSel], - currentTestData.R64[indexBlock]) + EXPECT_EQ(R64[indexSel], currentTestData.R64[indexBlock]) << msg; } if (var_cr32) { - EXPECT_EQ(CR32[indexSel], - currentTestData.CR32[indexBlock]) + EXPECT_EQ(CR32[indexSel], currentTestData.CR32[indexBlock]) << msg; } if (var_cr64) { - EXPECT_EQ(CR64[indexSel], - currentTestData.CR64[indexBlock]) + EXPECT_EQ(CR64[indexSel], currentTestData.CR64[indexBlock]) << msg; } } @@ -1523,33 +1396,21 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DAllStepsSel) io.DefineVariable("stepsGlobalValue"); io.DefineVariable("stepsGlobalValueString"); - io.DefineVariable("ranksLocalValue", - {adios2::LocalValueDim}); - io.DefineVariable("ranksLocalValueString", - {adios2::LocalValueDim}); - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("ranksLocalValue", {adios2::LocalValueDim}); + io.DefineVariable("ranksLocalValueString", {adios2::LocalValueDim}); + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -1561,8 +1422,8 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DAllStepsSel) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -1570,12 +1431,10 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DAllStepsSel) const int32_t step32 = static_cast(step); bpWriter.Put("stepsGlobalValue", step32); - bpWriter.Put("stepsGlobalValueString", - std::to_string(step)); + bpWriter.Put("stepsGlobalValueString", std::to_string(step)); bpWriter.Put("ranksLocalValue", mpiRank); - bpWriter.Put("ranksLocalValueString", - std::to_string(mpiRank)); + bpWriter.Put("ranksLocalValueString", std::to_string(mpiRank)); bpWriter.Put("i8", currentTestData.I8.data()); bpWriter.Put("i16", currentTestData.I16.data()); @@ -1587,10 +1446,8 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DAllStepsSel) bpWriter.Put("u64", currentTestData.U64.data()); bpWriter.Put("r32", currentTestData.R32.data()); bpWriter.Put("r64", currentTestData.R64.data()); - bpWriter.Put>("cr32", - currentTestData.CR32.data()); - bpWriter.Put>("cr64", - currentTestData.CR64.data()); + bpWriter.Put>("cr32", currentTestData.CR32.data()); + bpWriter.Put>("cr64", currentTestData.CR64.data()); bpWriter.EndStep(); } @@ -1605,8 +1462,7 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DAllStepsSel) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); std::vector I8; std::vector I16; @@ -1623,14 +1479,10 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DAllStepsSel) size_t t = 0; - auto var_StepsGlobalValue = - io.InquireVariable("stepsGlobalValue"); - auto var_StepsGlobalValueString = - io.InquireVariable("stepsGlobalValueString"); - auto var_RanksLocalValue = - io.InquireVariable("ranksLocalValue"); - auto var_RanksLocalValueString = - io.InquireVariable("ranksLocalValueString"); + auto var_StepsGlobalValue = io.InquireVariable("stepsGlobalValue"); + auto var_StepsGlobalValueString = io.InquireVariable("stepsGlobalValueString"); + auto var_RanksLocalValue = io.InquireVariable("ranksLocalValue"); + auto var_RanksLocalValueString = io.InquireVariable("ranksLocalValueString"); auto var_i8 = io.InquireVariable("i8"); auto var_i16 = io.InquireVariable("i16"); @@ -1649,14 +1501,11 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DAllStepsSel) EXPECT_EQ(var_StepsGlobalValue.Max(), static_cast(NSteps - 1)); // Read all steps at once - var_StepsGlobalValue.SetStepSelection( - {0, var_StepsGlobalValue.Steps()}); - var_StepsGlobalValueString.SetStepSelection( - {0, var_StepsGlobalValueString.Steps()}); + var_StepsGlobalValue.SetStepSelection({0, var_StepsGlobalValue.Steps()}); + var_StepsGlobalValueString.SetStepSelection({0, var_StepsGlobalValueString.Steps()}); var_RanksLocalValue.SetStepSelection({0, var_RanksLocalValue.Steps()}); - var_RanksLocalValueString.SetStepSelection( - {0, var_RanksLocalValueString.Steps()}); + var_RanksLocalValueString.SetStepSelection({0, var_RanksLocalValueString.Steps()}); var_i8.SetStepSelection({0, var_i8.Steps()}); var_i16.SetStepSelection({0, var_i16.Steps()}); @@ -1729,8 +1578,7 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DAllStepsSel) for (size_t s = 0; s < NSteps; ++s) { SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(s), static_cast(b), - mpiSize); + m_TestData, static_cast(s), static_cast(b), mpiSize); for (size_t j = i; j < Nx; ++j) { @@ -1740,86 +1588,62 @@ TEST_F(BPWriteReadLocalVariablesSel, BPWriteReadLocal1DAllStepsSel) if (var_i8) { - EXPECT_EQ(I8[s * (Nx - i) + j - i], - currentTestData.I8[j]) - << msg; + EXPECT_EQ(I8[s * (Nx - i) + j - i], currentTestData.I8[j]) << msg; } if (var_i16) { - EXPECT_EQ(I16[s * (Nx - i) + j - i], - currentTestData.I16[j]) - << msg; + EXPECT_EQ(I16[s * (Nx - i) + j - i], currentTestData.I16[j]) << msg; } if (var_i32) { - EXPECT_EQ(I32[s * (Nx - i) + j - i], - currentTestData.I32[j]) - << msg; + EXPECT_EQ(I32[s * (Nx - i) + j - i], currentTestData.I32[j]) << msg; } if (var_i64) { - EXPECT_EQ(I64[s * (Nx - i) + j - i], - currentTestData.I64[j]) - << msg; + EXPECT_EQ(I64[s * (Nx - i) + j - i], currentTestData.I64[j]) << msg; } if (var_u8) { - EXPECT_EQ(U8[s * (Nx - i) + j - i], - currentTestData.U8[j]) - << msg; + EXPECT_EQ(U8[s * (Nx - i) + j - i], currentTestData.U8[j]) << msg; } if (var_u16) { - EXPECT_EQ(U16[s * (Nx - i) + j - i], - currentTestData.U16[j]) - << msg; + EXPECT_EQ(U16[s * (Nx - i) + j - i], currentTestData.U16[j]) << msg; } if (var_u32) { - EXPECT_EQ(U32[s * (Nx - i) + j - i], - currentTestData.U32[j]) - << msg; + EXPECT_EQ(U32[s * (Nx - i) + j - i], currentTestData.U32[j]) << msg; } if (var_u64) { - EXPECT_EQ(U64[s * (Nx - i) + j - i], - currentTestData.U64[j]) - << msg; + EXPECT_EQ(U64[s * (Nx - i) + j - i], currentTestData.U64[j]) << msg; } if (var_r32) { - EXPECT_EQ(R32[s * (Nx - i) + j - i], - currentTestData.R32[j]) - << msg; + EXPECT_EQ(R32[s * (Nx - i) + j - i], currentTestData.R32[j]) << msg; } if (var_r64) { - EXPECT_EQ(R64[s * (Nx - i) + j - i], - currentTestData.R64[j]) - << msg; + EXPECT_EQ(R64[s * (Nx - i) + j - i], currentTestData.R64[j]) << msg; } if (var_cr32) { - EXPECT_EQ(CR32[s * (Nx - i) + j - i], - currentTestData.CR32[j]) - << msg; + EXPECT_EQ(CR32[s * (Nx - i) + j - i], currentTestData.CR32[j]) << msg; } if (var_cr64) { - EXPECT_EQ(CR64[s * (Nx - i) + j - i], - currentTestData.CR64[j]) - << msg; + EXPECT_EQ(CR64[s * (Nx - i) + j - i], currentTestData.CR64[j]) << msg; } } } // steps loop diff --git a/testing/adios2/engine/bp/TestBPWriteReadLocalVariablesSelHighLevel.cpp b/testing/adios2/engine/bp/TestBPWriteReadLocalVariablesSelHighLevel.cpp index c0e432891f..eaa9d3fdfb 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadLocalVariablesSelHighLevel.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadLocalVariablesSelHighLevel.cpp @@ -50,59 +50,45 @@ TEST_F(BPWriteReadLocalVariablesSelHighLevel, BPWriteReadLocal1DSel) const adios2::Dims count{Nx}; #if ADIOS2_USE_MPI - adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, - engineName); + adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, engineName); #else adios2::fstream oStream(fname, adios2::fstream::out, engineName); #endif for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); const int32_t step32 = static_cast(step); // global value oStream.write("stepsGlobalValue", step32, adios2::GlobalValue); - oStream.write("stepsGlobalValueString", std::to_string(step), - adios2::GlobalValue); + oStream.write("stepsGlobalValueString", std::to_string(step), adios2::GlobalValue); // local value const int32_t localValue = static_cast(mpiRank + step); oStream.write("ranksLocalValue", localValue, adios2::LocalValue); - oStream.write("ranksLocalValueString", std::to_string(localValue), - adios2::LocalValue); + oStream.write("ranksLocalValueString", std::to_string(localValue), adios2::LocalValue); // local arrays oStream.write("i8", currentTestData.I8.data(), shape, start, count); - oStream.write("i16", currentTestData.I16.data(), shape, start, - count); - oStream.write("i32", currentTestData.I32.data(), shape, start, - count); - oStream.write("i64", currentTestData.I64.data(), shape, start, - count); + oStream.write("i16", currentTestData.I16.data(), shape, start, count); + oStream.write("i32", currentTestData.I32.data(), shape, start, count); + oStream.write("i64", currentTestData.I64.data(), shape, start, count); oStream.write("u8", currentTestData.U8.data(), shape, start, count); - oStream.write("u16", currentTestData.U16.data(), shape, start, - count); - oStream.write("u32", currentTestData.U32.data(), shape, start, - count); - oStream.write("u64", currentTestData.U64.data(), shape, start, - count); - oStream.write("r32", currentTestData.R32.data(), shape, start, - count); - oStream.write("r64", currentTestData.R64.data(), shape, start, - count); - oStream.write("cr32", currentTestData.CR32.data(), shape, start, - count); - oStream.write("cr64", currentTestData.CR64.data(), shape, start, - count); + oStream.write("u16", currentTestData.U16.data(), shape, start, count); + oStream.write("u32", currentTestData.U32.data(), shape, start, count); + oStream.write("u64", currentTestData.U64.data(), shape, start, count); + oStream.write("r32", currentTestData.R32.data(), shape, start, count); + oStream.write("r64", currentTestData.R64.data(), shape, start, count); + oStream.write("cr32", currentTestData.CR32.data(), shape, start, count); + oStream.write("cr64", currentTestData.CR64.data(), shape, start, count); oStream.end_step(); } oStream.close(); #if ADIOS2_USE_MPI - adios2::fstream iStream(fname, adios2::fstream::in, MPI_COMM_WORLD, - engineName); + adios2::fstream iStream(fname, adios2::fstream::in, MPI_COMM_WORLD, engineName); #else adios2::fstream iStream(fname, adios2::fstream::in, engineName); #endif @@ -113,16 +99,14 @@ TEST_F(BPWriteReadLocalVariablesSelHighLevel, BPWriteReadLocal1DSel) const size_t currentStep = iStep.current_step(); EXPECT_EQ(currentStep, t); - const std::vector stepsGlobalValue = - iStep.read("stepsGlobalValue"); + const std::vector stepsGlobalValue = iStep.read("stepsGlobalValue"); EXPECT_EQ(stepsGlobalValue.front(), t); const std::vector stepsGlobalValueString = iStep.read("stepsGlobalValueString"); EXPECT_EQ(stepsGlobalValueString.front(), std::to_string(t)); - const std::vector ranksGlobalArray = - iStep.read("ranksLocalValue"); + const std::vector ranksGlobalArray = iStep.read("ranksLocalValue"); const std::vector ranksGlobalArrayString = iStep.read("ranksLocalValueString"); @@ -131,8 +115,7 @@ TEST_F(BPWriteReadLocalVariablesSelHighLevel, BPWriteReadLocal1DSel) for (size_t b = 0; b < static_cast(mpiSize); ++b) { SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(currentStep), - static_cast(b), mpiSize); + m_TestData, static_cast(currentStep), static_cast(b), mpiSize); EXPECT_EQ(ranksGlobalArray[b], b + t); EXPECT_EQ(ranksGlobalArrayString[b], std::to_string(b + t)); @@ -144,26 +127,18 @@ TEST_F(BPWriteReadLocalVariablesSelHighLevel, BPWriteReadLocal1DSel) const adios2::Dims count = {Nx - s}; const auto I8 = iStep.read("i8", start, count, b); - const auto I16 = - iStep.read("i16", start, count, b); - const auto I32 = - iStep.read("i32", start, count, b); - const auto I64 = - iStep.read("i64", start, count, b); + const auto I16 = iStep.read("i16", start, count, b); + const auto I32 = iStep.read("i32", start, count, b); + const auto I64 = iStep.read("i64", start, count, b); const auto U8 = iStep.read("u8", start, count, b); - const auto U16 = - iStep.read("u16", start, count, b); - const auto U32 = - iStep.read("u32", start, count, b); - const auto U64 = - iStep.read("u64", start, count, b); + const auto U16 = iStep.read("u16", start, count, b); + const auto U32 = iStep.read("u32", start, count, b); + const auto U64 = iStep.read("u64", start, count, b); const auto R32 = iStep.read("r32", start, count, b); const auto R64 = iStep.read("r64", start, count, b); - const auto CR32 = iStep.read>( - "cr32", start, count, b); - const auto CR64 = iStep.read>( - "cr64", start, count, b); + const auto CR32 = iStep.read>("cr32", start, count, b); + const auto CR64 = iStep.read>("cr64", start, count, b); for (size_t i = s; i < Nx; ++i) { @@ -216,59 +191,45 @@ TEST_F(BPWriteReadLocalVariablesSelHighLevel, BPWriteReadLocal2D2x4Sel) const adios2::Dims count{Ny, Nx}; #if ADIOS2_USE_MPI - adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, - engineName); + adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, engineName); #else adios2::fstream oStream(fname, adios2::fstream::out, engineName); #endif for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); const int32_t step32 = static_cast(step); // global value oStream.write("stepsGlobalValue", step32, adios2::GlobalValue); - oStream.write("stepsGlobalValueString", std::to_string(step), - adios2::GlobalValue); + oStream.write("stepsGlobalValueString", std::to_string(step), adios2::GlobalValue); // local value const int32_t localValue = static_cast(mpiRank + step); oStream.write("ranksLocalValue", localValue, adios2::LocalValue); - oStream.write("ranksLocalValueString", std::to_string(localValue), - adios2::LocalValue); + oStream.write("ranksLocalValueString", std::to_string(localValue), adios2::LocalValue); // local arrays oStream.write("i8", currentTestData.I8.data(), shape, start, count); - oStream.write("i16", currentTestData.I16.data(), shape, start, - count); - oStream.write("i32", currentTestData.I32.data(), shape, start, - count); - oStream.write("i64", currentTestData.I64.data(), shape, start, - count); + oStream.write("i16", currentTestData.I16.data(), shape, start, count); + oStream.write("i32", currentTestData.I32.data(), shape, start, count); + oStream.write("i64", currentTestData.I64.data(), shape, start, count); oStream.write("u8", currentTestData.U8.data(), shape, start, count); - oStream.write("u16", currentTestData.U16.data(), shape, start, - count); - oStream.write("u32", currentTestData.U32.data(), shape, start, - count); - oStream.write("u64", currentTestData.U64.data(), shape, start, - count); - oStream.write("r32", currentTestData.R32.data(), shape, start, - count); - oStream.write("r64", currentTestData.R64.data(), shape, start, - count); - oStream.write("cr32", currentTestData.CR32.data(), shape, start, - count); - oStream.write("cr64", currentTestData.CR64.data(), shape, start, - count); + oStream.write("u16", currentTestData.U16.data(), shape, start, count); + oStream.write("u32", currentTestData.U32.data(), shape, start, count); + oStream.write("u64", currentTestData.U64.data(), shape, start, count); + oStream.write("r32", currentTestData.R32.data(), shape, start, count); + oStream.write("r64", currentTestData.R64.data(), shape, start, count); + oStream.write("cr32", currentTestData.CR32.data(), shape, start, count); + oStream.write("cr64", currentTestData.CR64.data(), shape, start, count); oStream.end_step(); } oStream.close(); #if ADIOS2_USE_MPI - adios2::fstream iStream(fname, adios2::fstream::in, MPI_COMM_WORLD, - engineName); + adios2::fstream iStream(fname, adios2::fstream::in, MPI_COMM_WORLD, engineName); #else adios2::fstream iStream(fname, adios2::fstream::in, engineName); #endif @@ -279,16 +240,14 @@ TEST_F(BPWriteReadLocalVariablesSelHighLevel, BPWriteReadLocal2D2x4Sel) const size_t currentStep = iStep.current_step(); EXPECT_EQ(currentStep, t); - const std::vector stepsGlobalValue = - iStep.read("stepsGlobalValue"); + const std::vector stepsGlobalValue = iStep.read("stepsGlobalValue"); EXPECT_EQ(stepsGlobalValue.front(), t); const std::vector stepsGlobalValueString = iStep.read("stepsGlobalValueString"); EXPECT_EQ(stepsGlobalValueString.front(), std::to_string(t)); - const std::vector ranksGlobalArray = - iStep.read("ranksLocalValue"); + const std::vector ranksGlobalArray = iStep.read("ranksLocalValue"); const std::vector ranksGlobalArrayString = iStep.read("ranksLocalValueString"); @@ -297,8 +256,7 @@ TEST_F(BPWriteReadLocalVariablesSelHighLevel, BPWriteReadLocal2D2x4Sel) for (size_t b = 0; b < static_cast(mpiSize); ++b) { SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(currentStep), - static_cast(b), mpiSize); + m_TestData, static_cast(currentStep), static_cast(b), mpiSize); EXPECT_EQ(ranksGlobalArray[b], b + t); EXPECT_EQ(ranksGlobalArrayString[b], std::to_string(b + t)); @@ -311,31 +269,19 @@ TEST_F(BPWriteReadLocalVariablesSelHighLevel, BPWriteReadLocal2D2x4Sel) const adios2::Dims start = {j, i}; const adios2::Dims count = {Ny - j, Nx - i}; - const auto I8 = - iStep.read("i8", start, count, b); - const auto I16 = - iStep.read("i16", start, count, b); - const auto I32 = - iStep.read("i32", start, count, b); - const auto I64 = - iStep.read("i64", start, count, b); - const auto U8 = - iStep.read("u8", start, count, b); - const auto U16 = - iStep.read("u16", start, count, b); - const auto U32 = - iStep.read("u32", start, count, b); - const auto U64 = - iStep.read("u64", start, count, b); - const auto R32 = - iStep.read("r32", start, count, b); - const auto R64 = - iStep.read("r64", start, count, b); - - const auto CR32 = iStep.read>( - "cr32", start, count, b); - const auto CR64 = iStep.read>( - "cr64", start, count, b); + const auto I8 = iStep.read("i8", start, count, b); + const auto I16 = iStep.read("i16", start, count, b); + const auto I32 = iStep.read("i32", start, count, b); + const auto I64 = iStep.read("i64", start, count, b); + const auto U8 = iStep.read("u8", start, count, b); + const auto U16 = iStep.read("u16", start, count, b); + const auto U32 = iStep.read("u32", start, count, b); + const auto U64 = iStep.read("u64", start, count, b); + const auto R32 = iStep.read("r32", start, count, b); + const auto R64 = iStep.read("r64", start, count, b); + + const auto CR32 = iStep.read>("cr32", start, count, b); + const auto CR64 = iStep.read>("cr64", start, count, b); // element loop for (size_t q = j; q < Ny; ++q) @@ -343,61 +289,35 @@ TEST_F(BPWriteReadLocalVariablesSelHighLevel, BPWriteReadLocal2D2x4Sel) for (size_t p = i; p < Nx; ++p) { std::stringstream ss; - ss << "t=" << t << " q=" << q << " p=" << p - << " rank=" << mpiRank; + ss << "t=" << t << " q=" << q << " p=" << p << " rank=" << mpiRank; std::string msg = ss.str(); - const size_t indexSel = - (q - j) * (Nx - i) + (p - i); + const size_t indexSel = (q - j) * (Nx - i) + (p - i); const size_t indexBlock = q * Nx + p; - EXPECT_EQ(I8[indexSel], - currentTestData.I8[indexBlock]) - << msg; + EXPECT_EQ(I8[indexSel], currentTestData.I8[indexBlock]) << msg; - EXPECT_EQ(I16[indexSel], - currentTestData.I16[indexBlock]) - << msg; + EXPECT_EQ(I16[indexSel], currentTestData.I16[indexBlock]) << msg; - EXPECT_EQ(I32[indexSel], - currentTestData.I32[indexBlock]) - << msg; + EXPECT_EQ(I32[indexSel], currentTestData.I32[indexBlock]) << msg; - EXPECT_EQ(I64[indexSel], - currentTestData.I64[indexBlock]) - << msg; + EXPECT_EQ(I64[indexSel], currentTestData.I64[indexBlock]) << msg; - EXPECT_EQ(U8[indexSel], - currentTestData.U8[indexBlock]) - << msg; + EXPECT_EQ(U8[indexSel], currentTestData.U8[indexBlock]) << msg; - EXPECT_EQ(U16[indexSel], - currentTestData.U16[indexBlock]) - << msg; + EXPECT_EQ(U16[indexSel], currentTestData.U16[indexBlock]) << msg; - EXPECT_EQ(U32[indexSel], - currentTestData.U32[indexBlock]) - << msg; + EXPECT_EQ(U32[indexSel], currentTestData.U32[indexBlock]) << msg; - EXPECT_EQ(U64[indexSel], - currentTestData.U64[indexBlock]) - << msg; + EXPECT_EQ(U64[indexSel], currentTestData.U64[indexBlock]) << msg; - EXPECT_EQ(R32[indexSel], - currentTestData.R32[indexBlock]) - << msg; + EXPECT_EQ(R32[indexSel], currentTestData.R32[indexBlock]) << msg; - EXPECT_EQ(R64[indexSel], - currentTestData.R64[indexBlock]) - << msg; + EXPECT_EQ(R64[indexSel], currentTestData.R64[indexBlock]) << msg; - EXPECT_EQ(CR32[indexSel], - currentTestData.CR32[indexBlock]) - << msg; + EXPECT_EQ(CR32[indexSel], currentTestData.CR32[indexBlock]) << msg; - EXPECT_EQ(CR64[indexSel], - currentTestData.CR64[indexBlock]) - << msg; + EXPECT_EQ(CR64[indexSel], currentTestData.CR64[indexBlock]) << msg; } // q index } // p index } // j sel @@ -434,62 +354,47 @@ TEST_F(BPWriteReadLocalVariablesSelHighLevel, BPWriteReadLocal1DAllStepsSel) const adios2::Dims count{Nx}; #if ADIOS2_USE_MPI - adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, - engineName); + adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, engineName); #else adios2::fstream oStream(fname, adios2::fstream::out, engineName); #endif for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); const int32_t step32 = static_cast(step); // global value oStream.write("stepsGlobalValue", step32, adios2::GlobalValue); - oStream.write("stepsGlobalValueString", std::to_string(step), - adios2::GlobalValue); + oStream.write("stepsGlobalValueString", std::to_string(step), adios2::GlobalValue); // local value const int32_t localValue = static_cast(mpiRank + step); oStream.write("ranksLocalValue", localValue, adios2::LocalValue); - oStream.write("ranksLocalValueString", std::to_string(localValue), - adios2::LocalValue); + oStream.write("ranksLocalValueString", std::to_string(localValue), adios2::LocalValue); // local arrays oStream.write("i8", currentTestData.I8.data(), shape, start, count); - oStream.write("i16", currentTestData.I16.data(), shape, start, - count); - oStream.write("i32", currentTestData.I32.data(), shape, start, - count); - oStream.write("i64", currentTestData.I64.data(), shape, start, - count); + oStream.write("i16", currentTestData.I16.data(), shape, start, count); + oStream.write("i32", currentTestData.I32.data(), shape, start, count); + oStream.write("i64", currentTestData.I64.data(), shape, start, count); oStream.write("u8", currentTestData.U8.data(), shape, start, count); - oStream.write("u16", currentTestData.U16.data(), shape, start, - count); - oStream.write("u32", currentTestData.U32.data(), shape, start, - count); - oStream.write("u64", currentTestData.U64.data(), shape, start, - count); - oStream.write("r32", currentTestData.R32.data(), shape, start, - count); - oStream.write("r64", currentTestData.R64.data(), shape, start, - count); - oStream.write("cr32", currentTestData.CR32.data(), shape, start, - count); - oStream.write("cr64", currentTestData.CR64.data(), shape, start, - count); + oStream.write("u16", currentTestData.U16.data(), shape, start, count); + oStream.write("u32", currentTestData.U32.data(), shape, start, count); + oStream.write("u64", currentTestData.U64.data(), shape, start, count); + oStream.write("r32", currentTestData.R32.data(), shape, start, count); + oStream.write("r64", currentTestData.R64.data(), shape, start, count); + oStream.write("cr32", currentTestData.CR32.data(), shape, start, count); + oStream.write("cr64", currentTestData.CR64.data(), shape, start, count); oStream.end_step(); } oStream.close(); } #if ADIOS2_USE_MPI - adios2::fstream iStream(fname, adios2::fstream::in_random_access, - MPI_COMM_WORLD, engineName); + adios2::fstream iStream(fname, adios2::fstream::in_random_access, MPI_COMM_WORLD, engineName); #else - adios2::fstream iStream(fname, adios2::fstream::in_random_access, - engineName); + adios2::fstream iStream(fname, adios2::fstream::in_random_access, engineName); #endif const size_t stepStart = 0; @@ -499,15 +404,13 @@ TEST_F(BPWriteReadLocalVariablesSelHighLevel, BPWriteReadLocal1DAllStepsSel) iStream.read("stepsGlobalValue", stepStart, stepCount); const std::vector stepsGlobalValueString = - iStream.read("stepsGlobalValueString", stepStart, - stepCount); + iStream.read("stepsGlobalValueString", stepStart, stepCount); const std::vector ranksGlobalArray = iStream.read("ranksLocalValue", stepStart, stepCount); const std::vector ranksGlobalArrayString = - iStream.read("ranksLocalValueString", stepStart, - stepCount); + iStream.read("ranksLocalValueString", stepStart, stepCount); // loop blocks for (size_t b = 0; b < static_cast(mpiSize); ++b) @@ -518,38 +421,27 @@ TEST_F(BPWriteReadLocalVariablesSelHighLevel, BPWriteReadLocal1DAllStepsSel) const adios2::Dims start = {i}; const adios2::Dims count = {Nx - i}; - const auto I8 = iStream.read("i8", start, count, stepStart, - stepCount, b); - - const auto I16 = iStream.read("i16", start, count, - stepStart, stepCount, b); - const auto I32 = iStream.read("i32", start, count, - stepStart, stepCount, b); - const auto I64 = iStream.read("i64", start, count, - stepStart, stepCount, b); - const auto U8 = iStream.read("u8", start, count, stepStart, - stepCount, b); - const auto U16 = iStream.read("u16", start, count, - stepStart, stepCount, b); - const auto U32 = iStream.read("u32", start, count, - stepStart, stepCount, b); - const auto U64 = iStream.read("u64", start, count, - stepStart, stepCount, b); - const auto R32 = iStream.read("r32", start, count, stepStart, - stepCount, b); - const auto R64 = iStream.read("r64", start, count, - stepStart, stepCount, b); - - const auto CR32 = iStream.read>( - "cr32", start, count, stepStart, stepCount, b); - const auto CR64 = iStream.read>( - "cr64", start, count, stepStart, stepCount, b); + const auto I8 = iStream.read("i8", start, count, stepStart, stepCount, b); + + const auto I16 = iStream.read("i16", start, count, stepStart, stepCount, b); + const auto I32 = iStream.read("i32", start, count, stepStart, stepCount, b); + const auto I64 = iStream.read("i64", start, count, stepStart, stepCount, b); + const auto U8 = iStream.read("u8", start, count, stepStart, stepCount, b); + const auto U16 = iStream.read("u16", start, count, stepStart, stepCount, b); + const auto U32 = iStream.read("u32", start, count, stepStart, stepCount, b); + const auto U64 = iStream.read("u64", start, count, stepStart, stepCount, b); + const auto R32 = iStream.read("r32", start, count, stepStart, stepCount, b); + const auto R64 = iStream.read("r64", start, count, stepStart, stepCount, b); + + const auto CR32 = + iStream.read>("cr32", start, count, stepStart, stepCount, b); + const auto CR64 = + iStream.read>("cr64", start, count, stepStart, stepCount, b); for (size_t s = 0; s < NSteps; ++s) { - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, static_cast(s), - static_cast(b), mpiSize); + SmallTestData currentTestData = generateNewSmallTestData( + m_TestData, static_cast(s), static_cast(b), mpiSize); for (size_t j = i; j < Nx; ++j) { @@ -557,33 +449,19 @@ TEST_F(BPWriteReadLocalVariablesSelHighLevel, BPWriteReadLocal1DAllStepsSel) ss << "t=" << s << " j=" << j << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_EQ(I8[s * (Nx - i) + j - i], currentTestData.I8[j]) - << msg; - ASSERT_EQ(I16[s * (Nx - i) + j - i], currentTestData.I16[j]) - << msg; - EXPECT_EQ(I32[s * (Nx - i) + j - i], currentTestData.I32[j]) - << msg; - EXPECT_EQ(I64[s * (Nx - i) + j - i], currentTestData.I64[j]) - << msg; - - EXPECT_EQ(U8[s * (Nx - i) + j - i], currentTestData.U8[j]) - << msg; - EXPECT_EQ(U16[s * (Nx - i) + j - i], currentTestData.U16[j]) - << msg; - EXPECT_EQ(U32[s * (Nx - i) + j - i], currentTestData.U32[j]) - << msg; - EXPECT_EQ(U64[s * (Nx - i) + j - i], currentTestData.U64[j]) - << msg; - EXPECT_EQ(R32[s * (Nx - i) + j - i], currentTestData.R32[j]) - << msg; - EXPECT_EQ(R64[s * (Nx - i) + j - i], currentTestData.R64[j]) - << msg; - EXPECT_EQ(CR32[s * (Nx - i) + j - i], - currentTestData.CR32[j]) - << msg; - EXPECT_EQ(CR64[s * (Nx - i) + j - i], - currentTestData.CR64[j]) - << msg; + ASSERT_EQ(I8[s * (Nx - i) + j - i], currentTestData.I8[j]) << msg; + ASSERT_EQ(I16[s * (Nx - i) + j - i], currentTestData.I16[j]) << msg; + EXPECT_EQ(I32[s * (Nx - i) + j - i], currentTestData.I32[j]) << msg; + EXPECT_EQ(I64[s * (Nx - i) + j - i], currentTestData.I64[j]) << msg; + + EXPECT_EQ(U8[s * (Nx - i) + j - i], currentTestData.U8[j]) << msg; + EXPECT_EQ(U16[s * (Nx - i) + j - i], currentTestData.U16[j]) << msg; + EXPECT_EQ(U32[s * (Nx - i) + j - i], currentTestData.U32[j]) << msg; + EXPECT_EQ(U64[s * (Nx - i) + j - i], currentTestData.U64[j]) << msg; + EXPECT_EQ(R32[s * (Nx - i) + j - i], currentTestData.R32[j]) << msg; + EXPECT_EQ(R64[s * (Nx - i) + j - i], currentTestData.R64[j]) << msg; + EXPECT_EQ(CR32[s * (Nx - i) + j - i], currentTestData.CR32[j]) << msg; + EXPECT_EQ(CR64[s * (Nx - i) + j - i], currentTestData.CR64[j]) << msg; } } diff --git a/testing/adios2/engine/bp/TestBPWriteReadMultiblock.cpp b/testing/adios2/engine/bp/TestBPWriteReadMultiblock.cpp index d440268757..479f4ed594 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadMultiblock.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadMultiblock.cpp @@ -57,8 +57,7 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock1D8) // Make a 1D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces const adios2::Box sel1({mpiRank * Nx}, {Nx / 2}); - const adios2::Box sel2({mpiRank * Nx + Nx / 2}, - {Nx - Nx / 2}); + const adios2::Box sel2({mpiRank * Nx + Nx / 2}, {Nx - Nx / 2}); { adios2::IO io = adios.DeclareIO("TestIO"); @@ -75,36 +74,27 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock1D8) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -131,8 +121,8 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock1D8) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -227,8 +217,7 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock1D8) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_iString = io.InquireVariable("iString"); EXPECT_TRUE(var_iString); @@ -361,36 +350,26 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock1D8) for (size_t CurrentStep = 0; CurrentStep < NSteps; CurrentStep++) { - const std::vector::Info> - &iStringInfo = iStringAllInfo.at(t); - - const std::vector::Info> &i8Info = - i8AllInfo.at(t); - const std::vector::Info> &i16Info = - i16AllInfo.at(t); - const std::vector::Info> &i32Info = - i32AllInfo.at(t); - const std::vector::Info> &i64Info = - i64AllInfo.at(t); - - const std::vector::Info> &u8Info = - u8AllInfo.at(t); - const std::vector::Info> &u16Info = - u16AllInfo.at(t); - const std::vector::Info> &u32Info = - u32AllInfo.at(t); - const std::vector::Info> &u64Info = - u64AllInfo.at(t); - - const std::vector::Info> &r32Info = - r32AllInfo.at(t); - const std::vector::Info> &r64Info = - r64AllInfo.at(t); - - const std::vector>::Info> - &cr32Info = cr32AllInfo.at(t); - const std::vector>::Info> - &cr64Info = cr64AllInfo.at(t); + const std::vector::Info> &iStringInfo = + iStringAllInfo.at(t); + + const std::vector::Info> &i8Info = i8AllInfo.at(t); + const std::vector::Info> &i16Info = i16AllInfo.at(t); + const std::vector::Info> &i32Info = i32AllInfo.at(t); + const std::vector::Info> &i64Info = i64AllInfo.at(t); + + const std::vector::Info> &u8Info = u8AllInfo.at(t); + const std::vector::Info> &u16Info = u16AllInfo.at(t); + const std::vector::Info> &u32Info = u32AllInfo.at(t); + const std::vector::Info> &u64Info = u64AllInfo.at(t); + + const std::vector::Info> &r32Info = r32AllInfo.at(t); + const std::vector::Info> &r64Info = r64AllInfo.at(t); + + const std::vector>::Info> &cr32Info = + cr32AllInfo.at(t); + const std::vector>::Info> &cr64Info = + cr64AllInfo.at(t); EXPECT_EQ(iStringInfo.size(), mpiSize); EXPECT_EQ(i8Info.size(), 2 * mpiSize); @@ -465,9 +444,8 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock1D8) std::complex cr32Min, cr32Max; std::complex cr64Min, cr64Max; - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, static_cast(t), - static_cast(inRank), mpiSize); + SmallTestData currentTestData = generateNewSmallTestData( + m_TestData, static_cast(t), static_cast(inRank), mpiSize); if (i % 2 == 0) { @@ -484,66 +462,46 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock1D8) EXPECT_EQ(cr32Info[i].Start[0], inRank * Nx); EXPECT_EQ(cr64Info[i].Start[0], inRank * Nx); - i8Min = - *std::min_element(currentTestData.I8.begin(), - currentTestData.I8.begin() + Nx / 2); - i8Max = - *std::max_element(currentTestData.I8.begin(), - currentTestData.I8.begin() + Nx / 2); - i16Min = - *std::min_element(currentTestData.I16.begin(), - currentTestData.I16.begin() + Nx / 2); - i16Max = - *std::max_element(currentTestData.I16.begin(), - currentTestData.I16.begin() + Nx / 2); - i32Min = - *std::min_element(currentTestData.I32.begin(), - currentTestData.I32.begin() + Nx / 2); - i32Max = - *std::max_element(currentTestData.I32.begin(), - currentTestData.I32.begin() + Nx / 2); - i64Min = - *std::min_element(currentTestData.I64.begin(), - currentTestData.I64.begin() + Nx / 2); - i64Max = - *std::max_element(currentTestData.I64.begin(), - currentTestData.I64.begin() + Nx / 2); - u8Min = - *std::min_element(currentTestData.U8.begin(), - currentTestData.U8.begin() + Nx / 2); - u8Max = - *std::max_element(currentTestData.U8.begin(), - currentTestData.U8.begin() + Nx / 2); - u16Min = - *std::min_element(currentTestData.U16.begin(), - currentTestData.U16.begin() + Nx / 2); - u16Max = - *std::max_element(currentTestData.U16.begin(), - currentTestData.U16.begin() + Nx / 2); - u32Min = - *std::min_element(currentTestData.U32.begin(), - currentTestData.U32.begin() + Nx / 2); - u32Max = - *std::max_element(currentTestData.U32.begin(), - currentTestData.U32.begin() + Nx / 2); - u64Min = - *std::min_element(currentTestData.U64.begin(), - currentTestData.U64.begin() + Nx / 2); - u64Max = - *std::max_element(currentTestData.U64.begin(), - currentTestData.U64.begin() + Nx / 2); - r32Min = - *std::min_element(currentTestData.R32.begin(), - currentTestData.R32.begin() + Nx / 2); - r32Max = - *std::max_element(currentTestData.R32.begin(), - currentTestData.R32.begin() + Nx / 2); - r64Min = - *std::min_element(currentTestData.R64.begin(), - currentTestData.R64.begin() + Nx / 2); - r64Max = - *std::max_element(currentTestData.R64.begin(), - currentTestData.R64.begin() + Nx / 2); + i8Min = *std::min_element(currentTestData.I8.begin(), + currentTestData.I8.begin() + Nx / 2); + i8Max = *std::max_element(currentTestData.I8.begin(), + currentTestData.I8.begin() + Nx / 2); + i16Min = *std::min_element(currentTestData.I16.begin(), + currentTestData.I16.begin() + Nx / 2); + i16Max = *std::max_element(currentTestData.I16.begin(), + currentTestData.I16.begin() + Nx / 2); + i32Min = *std::min_element(currentTestData.I32.begin(), + currentTestData.I32.begin() + Nx / 2); + i32Max = *std::max_element(currentTestData.I32.begin(), + currentTestData.I32.begin() + Nx / 2); + i64Min = *std::min_element(currentTestData.I64.begin(), + currentTestData.I64.begin() + Nx / 2); + i64Max = *std::max_element(currentTestData.I64.begin(), + currentTestData.I64.begin() + Nx / 2); + u8Min = *std::min_element(currentTestData.U8.begin(), + currentTestData.U8.begin() + Nx / 2); + u8Max = *std::max_element(currentTestData.U8.begin(), + currentTestData.U8.begin() + Nx / 2); + u16Min = *std::min_element(currentTestData.U16.begin(), + currentTestData.U16.begin() + Nx / 2); + u16Max = *std::max_element(currentTestData.U16.begin(), + currentTestData.U16.begin() + Nx / 2); + u32Min = *std::min_element(currentTestData.U32.begin(), + currentTestData.U32.begin() + Nx / 2); + u32Max = *std::max_element(currentTestData.U32.begin(), + currentTestData.U32.begin() + Nx / 2); + u64Min = *std::min_element(currentTestData.U64.begin(), + currentTestData.U64.begin() + Nx / 2); + u64Max = *std::max_element(currentTestData.U64.begin(), + currentTestData.U64.begin() + Nx / 2); + r32Min = *std::min_element(currentTestData.R32.begin(), + currentTestData.R32.begin() + Nx / 2); + r32Max = *std::max_element(currentTestData.R32.begin(), + currentTestData.R32.begin() + Nx / 2); + r64Min = *std::min_element(currentTestData.R64.begin(), + currentTestData.R64.begin() + Nx / 2); + r64Max = *std::max_element(currentTestData.R64.begin(), + currentTestData.R64.begin() + Nx / 2); cr32Min = currentTestData.CR32.front(); cr32Max = currentTestData.CR32.front(); @@ -592,75 +550,55 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock1D8) EXPECT_EQ(cr32Info[i].Start[0], inRank * Nx + Nx / 2); EXPECT_EQ(cr64Info[i].Start[0], inRank * Nx + Nx / 2); - i8Min = - *std::min_element(currentTestData.I8.begin() + Nx / 2, - currentTestData.I8.begin() + Nx); - i8Max = - *std::max_element(currentTestData.I8.begin() + Nx / 2, - currentTestData.I8.begin() + Nx); - - i16Min = - *std::min_element(currentTestData.I16.begin() + Nx / 2, - currentTestData.I16.begin() + Nx); - i16Max = - *std::max_element(currentTestData.I16.begin() + Nx / 2, - currentTestData.I16.begin() + Nx); - - i32Min = - *std::min_element(currentTestData.I32.begin() + Nx / 2, - currentTestData.I32.begin() + Nx); - i32Max = - *std::max_element(currentTestData.I32.begin() + Nx / 2, - currentTestData.I32.begin() + Nx); - - i64Min = - *std::min_element(currentTestData.I64.begin() + Nx / 2, - currentTestData.I64.begin() + Nx); - i64Max = - *std::max_element(currentTestData.I64.begin() + Nx / 2, - currentTestData.I64.begin() + Nx); - - u8Min = - *std::min_element(currentTestData.U8.begin() + Nx / 2, - currentTestData.U8.begin() + Nx); - u8Max = - *std::max_element(currentTestData.U8.begin() + Nx / 2, - currentTestData.U8.begin() + Nx); - - u16Min = - *std::min_element(currentTestData.U16.begin() + Nx / 2, - currentTestData.U16.begin() + Nx); - u16Max = - *std::max_element(currentTestData.U16.begin() + Nx / 2, - currentTestData.U16.begin() + Nx); - - u32Min = - *std::min_element(currentTestData.U32.begin() + Nx / 2, - currentTestData.U32.begin() + Nx); - u32Max = - *std::max_element(currentTestData.U32.begin() + Nx / 2, - currentTestData.U32.begin() + Nx); - - u64Min = - *std::min_element(currentTestData.U64.begin() + Nx / 2, - currentTestData.U64.begin() + Nx); - u64Max = - *std::max_element(currentTestData.U64.begin() + Nx / 2, - currentTestData.U64.begin() + Nx); - - r32Min = - *std::min_element(currentTestData.R32.begin() + Nx / 2, - currentTestData.R32.begin() + Nx); - r32Max = - *std::max_element(currentTestData.R32.begin() + Nx / 2, - currentTestData.R32.begin() + Nx); - - r64Min = - *std::min_element(currentTestData.R64.begin() + Nx / 2, - currentTestData.R64.begin() + Nx); - r64Max = - *std::max_element(currentTestData.R64.begin() + Nx / 2, - currentTestData.R64.begin() + Nx); + i8Min = *std::min_element(currentTestData.I8.begin() + Nx / 2, + currentTestData.I8.begin() + Nx); + i8Max = *std::max_element(currentTestData.I8.begin() + Nx / 2, + currentTestData.I8.begin() + Nx); + + i16Min = *std::min_element(currentTestData.I16.begin() + Nx / 2, + currentTestData.I16.begin() + Nx); + i16Max = *std::max_element(currentTestData.I16.begin() + Nx / 2, + currentTestData.I16.begin() + Nx); + + i32Min = *std::min_element(currentTestData.I32.begin() + Nx / 2, + currentTestData.I32.begin() + Nx); + i32Max = *std::max_element(currentTestData.I32.begin() + Nx / 2, + currentTestData.I32.begin() + Nx); + + i64Min = *std::min_element(currentTestData.I64.begin() + Nx / 2, + currentTestData.I64.begin() + Nx); + i64Max = *std::max_element(currentTestData.I64.begin() + Nx / 2, + currentTestData.I64.begin() + Nx); + + u8Min = *std::min_element(currentTestData.U8.begin() + Nx / 2, + currentTestData.U8.begin() + Nx); + u8Max = *std::max_element(currentTestData.U8.begin() + Nx / 2, + currentTestData.U8.begin() + Nx); + + u16Min = *std::min_element(currentTestData.U16.begin() + Nx / 2, + currentTestData.U16.begin() + Nx); + u16Max = *std::max_element(currentTestData.U16.begin() + Nx / 2, + currentTestData.U16.begin() + Nx); + + u32Min = *std::min_element(currentTestData.U32.begin() + Nx / 2, + currentTestData.U32.begin() + Nx); + u32Max = *std::max_element(currentTestData.U32.begin() + Nx / 2, + currentTestData.U32.begin() + Nx); + + u64Min = *std::min_element(currentTestData.U64.begin() + Nx / 2, + currentTestData.U64.begin() + Nx); + u64Max = *std::max_element(currentTestData.U64.begin() + Nx / 2, + currentTestData.U64.begin() + Nx); + + r32Min = *std::min_element(currentTestData.R32.begin() + Nx / 2, + currentTestData.R32.begin() + Nx); + r32Max = *std::max_element(currentTestData.R32.begin() + Nx / 2, + currentTestData.R32.begin() + Nx); + + r64Min = *std::min_element(currentTestData.R64.begin() + Nx / 2, + currentTestData.R64.begin() + Nx); + r64Max = *std::max_element(currentTestData.R64.begin() + Nx / 2, + currentTestData.R64.begin() + Nx); cr32Min = currentTestData.CR32[Nx / 2]; cr32Max = currentTestData.CR32[Nx / 2]; @@ -720,8 +658,8 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock1D8) } // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); var_iString.SetStepSelection({CurrentStep, 1}); bpReader.Get(var_iString, IString); @@ -862,11 +800,10 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock2D2x4) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - const adios2::Box sel1({0, static_cast(mpiRank * Nx)}, - {Ny / 2, Nx}); + const adios2::Box sel1({0, static_cast(mpiRank * Nx)}, {Ny / 2, Nx}); - const adios2::Box sel2( - {Ny / 2, static_cast(mpiRank * Nx)}, {Ny - Ny / 2, Nx}); + const adios2::Box sel2({Ny / 2, static_cast(mpiRank * Nx)}, + {Ny - Ny / 2, Nx}); { adios2::IO io = adios.DeclareIO("TestIO"); @@ -883,36 +820,27 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock2D2x4) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -932,8 +860,8 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock2D2x4) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -1028,8 +956,7 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock2D2x4) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_iString = io.InquireVariable("iString"); EXPECT_TRUE(var_iString); @@ -1216,8 +1143,8 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock2D2x4) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString, currentTestData.S1); @@ -1281,11 +1208,10 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock2D4x2) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - const adios2::Box sel1({0, static_cast(mpiRank * Nx)}, - {Ny / 2, Nx}); + const adios2::Box sel1({0, static_cast(mpiRank * Nx)}, {Ny / 2, Nx}); - const adios2::Box sel2( - {Ny / 2, static_cast(mpiRank * Nx)}, {Ny - Ny / 2, Nx}); + const adios2::Box sel2({Ny / 2, static_cast(mpiRank * Nx)}, + {Ny - Ny / 2, Nx}); { adios2::IO io = adios.DeclareIO("TestIO"); @@ -1294,44 +1220,32 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock2D4x2) // The local process' part (start, count) can be defined now or later // before Write(). { - adios2::Dims shape{static_cast(Ny), - static_cast(mpiSize * Nx)}; - adios2::Dims start{static_cast(0), - static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; + adios2::Dims shape{static_cast(Ny), static_cast(mpiSize * Nx)}; + adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -1353,8 +1267,8 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock2D4x2) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -1447,8 +1361,7 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock2D4x2) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); @@ -1575,10 +1488,10 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock2D4x2) const std::vector::Info> r64Info = bpReader.BlocksInfo(var_r64, CurrentStep); - const std::vector>::Info> - cr32Info = bpReader.BlocksInfo(var_cr32, CurrentStep); - const std::vector>::Info> - cr64Info = bpReader.BlocksInfo(var_cr64, CurrentStep); + const std::vector>::Info> cr32Info = + bpReader.BlocksInfo(var_cr32, CurrentStep); + const std::vector>::Info> cr64Info = + bpReader.BlocksInfo(var_cr64, CurrentStep); EXPECT_EQ(i8Info.size(), 2 * mpiSize); EXPECT_EQ(i16Info.size(), 2 * mpiSize); @@ -1622,9 +1535,8 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock2D4x2) std::complex cr32Min, cr32Max; std::complex cr64Min, cr64Max; - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, static_cast(t), - static_cast(inRank), mpiSize); + SmallTestData currentTestData = generateNewSmallTestData( + m_TestData, static_cast(t), static_cast(inRank), mpiSize); if (i % 2 == 0) { @@ -1701,65 +1613,45 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock2D4x2) EXPECT_EQ(cr64Info[i].WriterID, inRank); i8Min = *std::min_element(currentTestData.I8.begin(), - currentTestData.I8.begin() + - Ny * Nx / 2); + currentTestData.I8.begin() + Ny * Nx / 2); i8Max = *std::max_element(currentTestData.I8.begin(), - currentTestData.I8.begin() + - Ny * Nx / 2); + currentTestData.I8.begin() + Ny * Nx / 2); i16Min = *std::min_element(currentTestData.I16.begin(), - currentTestData.I16.begin() + - Ny * Nx / 2); + currentTestData.I16.begin() + Ny * Nx / 2); i16Max = *std::max_element(currentTestData.I16.begin(), - currentTestData.I16.begin() + - Ny * Nx / 2); + currentTestData.I16.begin() + Ny * Nx / 2); i32Min = *std::min_element(currentTestData.I32.begin(), - currentTestData.I32.begin() + - Ny * Nx / 2); + currentTestData.I32.begin() + Ny * Nx / 2); i32Max = *std::max_element(currentTestData.I32.begin(), - currentTestData.I32.begin() + - Ny * Nx / 2); + currentTestData.I32.begin() + Ny * Nx / 2); i64Min = *std::min_element(currentTestData.I64.begin(), - currentTestData.I64.begin() + - Ny * Nx / 2); + currentTestData.I64.begin() + Ny * Nx / 2); i64Max = *std::max_element(currentTestData.I64.begin(), - currentTestData.I64.begin() + - Ny * Nx / 2); + currentTestData.I64.begin() + Ny * Nx / 2); u8Min = *std::min_element(currentTestData.U8.begin(), - currentTestData.U8.begin() + - Ny * Nx / 2); + currentTestData.U8.begin() + Ny * Nx / 2); u8Max = *std::max_element(currentTestData.U8.begin(), - currentTestData.U8.begin() + - Ny * Nx / 2); + currentTestData.U8.begin() + Ny * Nx / 2); u16Min = *std::min_element(currentTestData.U16.begin(), - currentTestData.U16.begin() + - Ny * Nx / 2); + currentTestData.U16.begin() + Ny * Nx / 2); u16Max = *std::max_element(currentTestData.U16.begin(), - currentTestData.U16.begin() + - Ny * Nx / 2); + currentTestData.U16.begin() + Ny * Nx / 2); u32Min = *std::min_element(currentTestData.U32.begin(), - currentTestData.U32.begin() + - Ny * Nx / 2); + currentTestData.U32.begin() + Ny * Nx / 2); u32Max = *std::max_element(currentTestData.U32.begin(), - currentTestData.U32.begin() + - Ny * Nx / 2); + currentTestData.U32.begin() + Ny * Nx / 2); u64Min = *std::min_element(currentTestData.U64.begin(), - currentTestData.U64.begin() + - Ny * Nx / 2); + currentTestData.U64.begin() + Ny * Nx / 2); u64Max = *std::max_element(currentTestData.U64.begin(), - currentTestData.U64.begin() + - Ny * Nx / 2); + currentTestData.U64.begin() + Ny * Nx / 2); r32Min = *std::min_element(currentTestData.R32.begin(), - currentTestData.R32.begin() + - Ny * Nx / 2); + currentTestData.R32.begin() + Ny * Nx / 2); r32Max = *std::max_element(currentTestData.R32.begin(), - currentTestData.R32.begin() + - Ny * Nx / 2); + currentTestData.R32.begin() + Ny * Nx / 2); r64Min = *std::min_element(currentTestData.R64.begin(), - currentTestData.R64.begin() + - Ny * Nx / 2); + currentTestData.R64.begin() + Ny * Nx / 2); r64Max = *std::max_element(currentTestData.R64.begin(), - currentTestData.R64.begin() + - Ny * Nx / 2); + currentTestData.R64.begin() + Ny * Nx / 2); cr32Min = currentTestData.CR32.front(); cr32Max = currentTestData.CR32.front(); @@ -1855,75 +1747,55 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock2D4x2) EXPECT_EQ(cr64Info[i].Count[0], Ny - Ny / 2); EXPECT_EQ(cr64Info[i].Count[1], Nx); - i8Min = *std::min_element( - currentTestData.I8.begin() + Ny * Nx / 2, - currentTestData.I8.begin() + Ny * Nx); - i8Max = *std::max_element( - currentTestData.I8.begin() + Ny * Nx / 2, - currentTestData.I8.begin() + Ny * Nx); - - i16Min = *std::min_element( - currentTestData.I16.begin() + Ny * Nx / 2, - currentTestData.I16.begin() + Ny * Nx); - i16Max = *std::max_element( - currentTestData.I16.begin() + Ny * Nx / 2, - currentTestData.I16.begin() + Ny * Nx); - - i32Min = *std::min_element( - currentTestData.I32.begin() + Ny * Nx / 2, - currentTestData.I32.begin() + Ny * Nx); - i32Max = *std::max_element( - currentTestData.I32.begin() + Ny * Nx / 2, - currentTestData.I32.begin() + Ny * Nx); - - i64Min = *std::min_element( - currentTestData.I64.begin() + Ny * Nx / 2, - currentTestData.I64.begin() + Ny * Nx); - i64Max = *std::max_element( - currentTestData.I64.begin() + Ny * Nx / 2, - currentTestData.I64.begin() + Ny * Nx); - - u8Min = *std::min_element( - currentTestData.U8.begin() + Ny * Nx / 2, - currentTestData.U8.begin() + Ny * Nx); - u8Max = *std::max_element( - currentTestData.U8.begin() + Ny * Nx / 2, - currentTestData.U8.begin() + Ny * Nx); - - u16Min = *std::min_element( - currentTestData.U16.begin() + Ny * Nx / 2, - currentTestData.U16.begin() + Ny * Nx); - u16Max = *std::max_element( - currentTestData.U16.begin() + Ny * Nx / 2, - currentTestData.U16.begin() + Ny * Nx); - - u32Min = *std::min_element( - currentTestData.U32.begin() + Ny * Nx / 2, - currentTestData.U32.begin() + Ny * Nx); - u32Max = *std::max_element( - currentTestData.U32.begin() + Ny * Nx / 2, - currentTestData.U32.begin() + Ny * Nx); - - u64Min = *std::min_element( - currentTestData.U64.begin() + Ny * Nx / 2, - currentTestData.U64.begin() + Ny * Nx); - u64Max = *std::max_element( - currentTestData.U64.begin() + Ny * Nx / 2, - currentTestData.U64.begin() + Ny * Nx); - - r32Min = *std::min_element( - currentTestData.R32.begin() + Ny * Nx / 2, - currentTestData.R32.begin() + Ny * Nx); - r32Max = *std::max_element( - currentTestData.R32.begin() + Ny * Nx / 2, - currentTestData.R32.begin() + Ny * Nx); - - r64Min = *std::min_element( - currentTestData.R64.begin() + Ny * Nx / 2, - currentTestData.R64.begin() + Ny * Nx); - r64Max = *std::max_element( - currentTestData.R64.begin() + Ny * Nx / 2, - currentTestData.R64.begin() + Ny * Nx); + i8Min = *std::min_element(currentTestData.I8.begin() + Ny * Nx / 2, + currentTestData.I8.begin() + Ny * Nx); + i8Max = *std::max_element(currentTestData.I8.begin() + Ny * Nx / 2, + currentTestData.I8.begin() + Ny * Nx); + + i16Min = *std::min_element(currentTestData.I16.begin() + Ny * Nx / 2, + currentTestData.I16.begin() + Ny * Nx); + i16Max = *std::max_element(currentTestData.I16.begin() + Ny * Nx / 2, + currentTestData.I16.begin() + Ny * Nx); + + i32Min = *std::min_element(currentTestData.I32.begin() + Ny * Nx / 2, + currentTestData.I32.begin() + Ny * Nx); + i32Max = *std::max_element(currentTestData.I32.begin() + Ny * Nx / 2, + currentTestData.I32.begin() + Ny * Nx); + + i64Min = *std::min_element(currentTestData.I64.begin() + Ny * Nx / 2, + currentTestData.I64.begin() + Ny * Nx); + i64Max = *std::max_element(currentTestData.I64.begin() + Ny * Nx / 2, + currentTestData.I64.begin() + Ny * Nx); + + u8Min = *std::min_element(currentTestData.U8.begin() + Ny * Nx / 2, + currentTestData.U8.begin() + Ny * Nx); + u8Max = *std::max_element(currentTestData.U8.begin() + Ny * Nx / 2, + currentTestData.U8.begin() + Ny * Nx); + + u16Min = *std::min_element(currentTestData.U16.begin() + Ny * Nx / 2, + currentTestData.U16.begin() + Ny * Nx); + u16Max = *std::max_element(currentTestData.U16.begin() + Ny * Nx / 2, + currentTestData.U16.begin() + Ny * Nx); + + u32Min = *std::min_element(currentTestData.U32.begin() + Ny * Nx / 2, + currentTestData.U32.begin() + Ny * Nx); + u32Max = *std::max_element(currentTestData.U32.begin() + Ny * Nx / 2, + currentTestData.U32.begin() + Ny * Nx); + + u64Min = *std::min_element(currentTestData.U64.begin() + Ny * Nx / 2, + currentTestData.U64.begin() + Ny * Nx); + u64Max = *std::max_element(currentTestData.U64.begin() + Ny * Nx / 2, + currentTestData.U64.begin() + Ny * Nx); + + r32Min = *std::min_element(currentTestData.R32.begin() + Ny * Nx / 2, + currentTestData.R32.begin() + Ny * Nx); + r32Max = *std::max_element(currentTestData.R32.begin() + Ny * Nx / 2, + currentTestData.R32.begin() + Ny * Nx); + + r64Min = *std::min_element(currentTestData.R64.begin() + Ny * Nx / 2, + currentTestData.R64.begin() + Ny * Nx); + r64Max = *std::max_element(currentTestData.R64.begin() + Ny * Nx / 2, + currentTestData.R64.begin() + Ny * Nx); cr32Min = currentTestData.CR32[Ny * Nx / 2]; cr32Max = currentTestData.CR32[Ny * Nx / 2]; @@ -2054,8 +1926,8 @@ TEST_F(BPWriteReadMultiblockTest, ADIOS2BPWriteReadMultiblock2D4x2) bpReader.Get(var_cr64, CR64.data() + Ny * Nx / 2); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); bpReader.PerformGets(); @@ -2094,8 +1966,7 @@ TEST_F(BPWriteReadMultiblockTest, MultiblockPerformDataWrite) { if (engineName != "BP5") { - std::cout << "Engine " << engineName - << " is not tested for this feature." << std::endl; + std::cout << "Engine " << engineName << " is not tested for this feature." << std::endl; return; } // Each process would write a 1x8 array and all processes would @@ -2125,8 +1996,7 @@ TEST_F(BPWriteReadMultiblockTest, MultiblockPerformDataWrite) /* Write output */ { adios2::IO io = adios.DeclareIO("TestIO"); - const adios2::Dims shape{static_cast(mpiSize), - static_cast(Nx * Nblocks)}; + const adios2::Dims shape{static_cast(mpiSize), static_cast(Nx * Nblocks)}; const adios2::Dims start{static_cast(mpiRank), 0}; const adios2::Dims count{1, Nx}; @@ -2155,8 +2025,7 @@ TEST_F(BPWriteReadMultiblockTest, MultiblockPerformDataWrite) SmallTestData currentTestData = generateNewSmallTestData(m_TestData, t, mpiRank, mpiSize); - const adios2::Box sel({(size_t)mpiRank, b * Nx}, - {1, Nx}); + const adios2::Box sel({(size_t)mpiRank, b * Nx}, {1, Nx}); var_i32.SetSelection(sel); bpWriter.Put(var_i32, currentTestData.I32.data()); @@ -2180,8 +2049,7 @@ TEST_F(BPWriteReadMultiblockTest, MultiblockPerformDataWrite) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i32 = io.InquireVariable("i32"); EXPECT_TRUE(var_i32); @@ -2201,15 +2069,13 @@ TEST_F(BPWriteReadMultiblockTest, MultiblockPerformDataWrite) var_i32.SetStepSelection({step, 1}); for (size_t b = 0; b < Nblocks; ++b) { - std::cout << "Read step " << step << " block=" << b - << std::endl; + std::cout << "Read step " << step << " block=" << b << std::endl; // Generate test data for each process / block uniquely int t = static_cast(step * Nblocks + b); SmallTestData currentTestData = generateNewSmallTestData(m_TestData, t, mpiRank, mpiSize); - const adios2::Box sel({(size_t)mpiRank, b * Nx}, - {1, Nx}); + const adios2::Box sel({(size_t)mpiRank, b * Nx}, {1, Nx}); var_i32.SetSelection(sel); bpReader.Get(var_i32, I32.data(), adios2::Mode::Sync); @@ -2217,8 +2083,7 @@ TEST_F(BPWriteReadMultiblockTest, MultiblockPerformDataWrite) for (size_t i = 0; i < Nx; ++i) { std::stringstream ss; - ss << "step=" << step << " block=" << b << " i=" << i - << " rank=" << mpiRank; + ss << "step=" << step << " block=" << b << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); EXPECT_EQ(I32[i], currentTestData.I32[i]) << msg; } diff --git a/testing/adios2/engine/bp/TestBPWriteReadVariableSpan.cpp b/testing/adios2/engine/bp/TestBPWriteReadVariableSpan.cpp index d56553be8c..57fe702338 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadVariableSpan.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadVariableSpan.cpp @@ -65,30 +65,23 @@ TEST_F(BPWriteReadSpan, BPWriteRead1D8) auto var_Step = io.DefineVariable("step"); /* Why is there no Span for string variable? */ - auto var_i8 = io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - auto var_i16 = io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - auto var_i32 = io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - auto var_i64 = io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - auto var_u8 = io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - auto var_u16 = io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - auto var_u32 = io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - auto var_u64 = io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count, adios2::ConstantDims); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count, adios2::ConstantDims); + auto var_i8 = io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + auto var_i16 = io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + auto var_i32 = io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + auto var_i64 = io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + auto var_u8 = io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + auto var_u16 = + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + auto var_u32 = + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + auto var_u64 = + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count, + adios2::ConstantDims); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count, + adios2::ConstantDims); (void)var_i8; (void)var_i16; @@ -107,8 +100,8 @@ TEST_F(BPWriteReadSpan, BPWriteRead1D8) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); bpWriter.BeginStep(); @@ -127,23 +120,20 @@ TEST_F(BPWriteReadSpan, BPWriteRead1D8) adios2::Variable::Span u64Span = bpWriter.Put(var_u64); adios2::Variable::Span r32Span = bpWriter.Put(var_r32); adios2::Variable::Span r64Span = bpWriter.Put(var_r64); - adios2::Variable>::Span cr32Span = - bpWriter.Put(var_cr32); - adios2::Variable>::Span cr64Span = - bpWriter.Put(var_cr64); + adios2::Variable>::Span cr32Span = bpWriter.Put(var_cr32); + adios2::Variable>::Span cr64Span = bpWriter.Put(var_cr64); auto ptr = i64Span.data(); (void)ptr; // Testing Data() - std::copy(currentTestData.I8.begin(), - currentTestData.I8.begin() + Nx, i8Span.begin()); - std::copy(currentTestData.I16.begin(), - currentTestData.I16.begin() + Nx, i16Span.begin()); - std::copy(currentTestData.I32.begin(), - currentTestData.I32.begin() + Nx, i32Span.data()); - std::copy(currentTestData.I64.begin(), - currentTestData.I64.begin() + Nx, i64Span.data()); + std::copy(currentTestData.I8.begin(), currentTestData.I8.begin() + Nx, i8Span.begin()); + std::copy(currentTestData.I16.begin(), currentTestData.I16.begin() + Nx, + i16Span.begin()); + std::copy(currentTestData.I32.begin(), currentTestData.I32.begin() + Nx, + i32Span.data()); + std::copy(currentTestData.I64.begin(), currentTestData.I64.begin() + Nx, + i64Span.data()); // Testing operator[] and At for (size_t i = 0; i < Nx; ++i) { @@ -370,30 +360,23 @@ TEST_F(BPWriteReadSpan, BPWriteRead2D2x4) const adios2::Dims start{0, static_cast(mpiRank * Nx)}; const adios2::Dims count{Ny, Nx}; - auto var_i8 = io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - auto var_i16 = io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - auto var_i32 = io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - auto var_i64 = io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - auto var_u8 = io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - auto var_u16 = io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - auto var_u32 = io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - auto var_u64 = io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count, adios2::ConstantDims); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count, adios2::ConstantDims); + auto var_i8 = io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + auto var_i16 = io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + auto var_i32 = io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + auto var_i64 = io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + auto var_u8 = io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + auto var_u16 = + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + auto var_u32 = + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + auto var_u64 = + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count, + adios2::ConstantDims); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count, + adios2::ConstantDims); (void)var_i8; (void)var_i16; @@ -412,8 +395,8 @@ TEST_F(BPWriteReadSpan, BPWriteRead2D2x4) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); bpWriter.BeginStep(); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -427,16 +410,14 @@ TEST_F(BPWriteReadSpan, BPWriteRead2D2x4) adios2::Variable::Span u64Span = bpWriter.Put(var_u64); adios2::Variable::Span r32Span = bpWriter.Put(var_r32); adios2::Variable::Span r64Span = bpWriter.Put(var_r64); - adios2::Variable>::Span cr32Span = - bpWriter.Put(var_cr32); - adios2::Variable>::Span cr64Span = - bpWriter.Put(var_cr64); + adios2::Variable>::Span cr32Span = bpWriter.Put(var_cr32); + adios2::Variable>::Span cr64Span = bpWriter.Put(var_cr64); // Testing Data() - std::copy(currentTestData.I8.begin(), - currentTestData.I8.begin() + Nx * Ny, i8Span.data()); - std::copy(currentTestData.I16.begin(), - currentTestData.I16.begin() + Nx * Ny, i16Span.data()); + std::copy(currentTestData.I8.begin(), currentTestData.I8.begin() + Nx * Ny, + i8Span.data()); + std::copy(currentTestData.I16.begin(), currentTestData.I16.begin() + Nx * Ny, + i16Span.data()); size_t i = 0; for (auto &i32 : i32Span) @@ -683,30 +664,23 @@ TEST_F(BPWriteReadSpan, BPWriteRead1D8Local) const adios2::Dims start{}; const adios2::Dims count{Nx}; - auto var_i8 = io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - auto var_i16 = io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - auto var_i32 = io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - auto var_i64 = io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - auto var_u8 = io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - auto var_u16 = io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - auto var_u32 = io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - auto var_u64 = io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count, adios2::ConstantDims); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count, adios2::ConstantDims); + auto var_i8 = io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + auto var_i16 = io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + auto var_i32 = io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + auto var_i64 = io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + auto var_u8 = io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + auto var_u16 = + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + auto var_u32 = + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + auto var_u64 = + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count, + adios2::ConstantDims); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count, + adios2::ConstantDims); (void)var_i8; (void)var_i16; @@ -725,8 +699,8 @@ TEST_F(BPWriteReadSpan, BPWriteRead1D8Local) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); bpWriter.BeginStep(); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -742,20 +716,17 @@ TEST_F(BPWriteReadSpan, BPWriteRead1D8Local) adios2::Variable::Span u64Span = bpWriter.Put(var_u64); adios2::Variable::Span r32Span = bpWriter.Put(var_r32); adios2::Variable::Span r64Span = bpWriter.Put(var_r64); - adios2::Variable>::Span cr32Span = - bpWriter.Put(var_cr32); - adios2::Variable>::Span cr64Span = - bpWriter.Put(var_cr64); + adios2::Variable>::Span cr32Span = bpWriter.Put(var_cr32); + adios2::Variable>::Span cr64Span = bpWriter.Put(var_cr64); // Testing Data() - std::copy(currentTestData.I8.begin(), - currentTestData.I8.begin() + Nx, i8Span.begin()); - std::copy(currentTestData.I16.begin(), - currentTestData.I16.begin() + Nx, i16Span.begin()); - std::copy(currentTestData.I32.begin(), - currentTestData.I32.begin() + Nx, i32Span.data()); - std::copy(currentTestData.I64.begin(), - currentTestData.I64.begin() + Nx, i64Span.data()); + std::copy(currentTestData.I8.begin(), currentTestData.I8.begin() + Nx, i8Span.begin()); + std::copy(currentTestData.I16.begin(), currentTestData.I16.begin() + Nx, + i16Span.begin()); + std::copy(currentTestData.I32.begin(), currentTestData.I32.begin() + Nx, + i32Span.data()); + std::copy(currentTestData.I64.begin(), currentTestData.I64.begin() + Nx, + i64Span.data()); // Testing operator[] and At for (size_t i = 0; i < Nx; ++i) { @@ -946,30 +917,23 @@ TEST_F(BPWriteReadSpan, BPWriteRead2D2x4Local) const adios2::Dims start{}; const adios2::Dims count{Ny, Nx}; - auto var_i8 = io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - auto var_i16 = io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - auto var_i32 = io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - auto var_i64 = io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - auto var_u8 = io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - auto var_u16 = io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - auto var_u32 = io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - auto var_u64 = io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count, adios2::ConstantDims); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count, adios2::ConstantDims); + auto var_i8 = io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + auto var_i16 = io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + auto var_i32 = io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + auto var_i64 = io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + auto var_u8 = io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + auto var_u16 = + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + auto var_u32 = + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + auto var_u64 = + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count, + adios2::ConstantDims); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count, + adios2::ConstantDims); (void)var_i8; (void)var_i16; @@ -988,8 +952,8 @@ TEST_F(BPWriteReadSpan, BPWriteRead2D2x4Local) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); bpWriter.BeginStep(); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -1003,16 +967,14 @@ TEST_F(BPWriteReadSpan, BPWriteRead2D2x4Local) adios2::Variable::Span u64Span = bpWriter.Put(var_u64); adios2::Variable::Span r32Span = bpWriter.Put(var_r32); adios2::Variable::Span r64Span = bpWriter.Put(var_r64); - adios2::Variable>::Span cr32Span = - bpWriter.Put(var_cr32); - adios2::Variable>::Span cr64Span = - bpWriter.Put(var_cr64); + adios2::Variable>::Span cr32Span = bpWriter.Put(var_cr32); + adios2::Variable>::Span cr64Span = bpWriter.Put(var_cr64); // Testing Data() - std::copy(currentTestData.I8.begin(), - currentTestData.I8.begin() + Nx * Ny, i8Span.data()); - std::copy(currentTestData.I16.begin(), - currentTestData.I16.begin() + Nx * Ny, i16Span.data()); + std::copy(currentTestData.I8.begin(), currentTestData.I8.begin() + Nx * Ny, + i8Span.data()); + std::copy(currentTestData.I16.begin(), currentTestData.I16.begin() + Nx * Ny, + i16Span.data()); size_t i = 0; for (auto &i32 : i32Span) @@ -1231,30 +1193,23 @@ TEST_F(BPWriteReadSpan, BPWriteRead1D8FillValue) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_i8 = io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - auto var_i16 = io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - auto var_i32 = io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - auto var_i64 = io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - auto var_u8 = io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - auto var_u16 = io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - auto var_u32 = io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - auto var_u64 = io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count, adios2::ConstantDims); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count, adios2::ConstantDims); + auto var_i8 = io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + auto var_i16 = io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + auto var_i32 = io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + auto var_i64 = io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + auto var_u8 = io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + auto var_u16 = + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + auto var_u32 = + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + auto var_u64 = + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count, + adios2::ConstantDims); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count, + adios2::ConstantDims); (void)var_i8; (void)var_i16; @@ -1301,13 +1256,10 @@ TEST_F(BPWriteReadSpan, BPWriteRead1D8FillValue) adios2::Variable::Span r64Span = bpWriter.Put(var_r64, true, static_cast(step)); - adios2::Variable>::Span cr32Span = bpWriter.Put( - var_cr32, true, - {static_cast(step), static_cast(step)}); - adios2::Variable>::Span cr64Span = - bpWriter.Put( - var_cr64, true, - {static_cast(step), static_cast(step)}); + adios2::Variable>::Span cr32Span = + bpWriter.Put(var_cr32, true, {static_cast(step), static_cast(step)}); + adios2::Variable>::Span cr64Span = bpWriter.Put( + var_cr64, true, {static_cast(step), static_cast(step)}); (void)i8Span; (void)i16Span; @@ -1497,13 +1449,11 @@ TEST_F(BPWriteReadSpan, BPWriteRead1D8FillValue) EXPECT_EQ(U64[i], static_cast(currentStep)) << msg; EXPECT_EQ(R32[i], static_cast(currentStep)) << msg; EXPECT_EQ(R64[i], static_cast(currentStep)) << msg; - EXPECT_EQ(CR32[i], - std::complex(static_cast(currentStep), - static_cast(currentStep))) + EXPECT_EQ(CR32[i], std::complex(static_cast(currentStep), + static_cast(currentStep))) << msg; - EXPECT_EQ(CR64[i], std::complex( - static_cast(currentStep), - static_cast(currentStep))) + EXPECT_EQ(CR64[i], std::complex(static_cast(currentStep), + static_cast(currentStep))) << msg; } @@ -1556,10 +1506,8 @@ TEST_F(BPWriteReadSpan, BPWriteSpanOperatorException) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); adios2::Operator BZIP2Op = adios.DefineOperator("BZIP2Compressor", adios2::ops::LosslessBZIP2); @@ -1574,10 +1522,8 @@ TEST_F(BPWriteReadSpan, BPWriteSpanOperatorException) // using bzip2, it could have been any operator to generate an // exception - var_r32.AddOperation( - BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, "1e-4"}}); - var_r64.AddOperation( - BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, "1e-4"}}); + var_r32.AddOperation(BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, "1e-4"}}); + var_r64.AddOperation(BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, "1e-4"}}); EXPECT_THROW(bpWriter.Put(var_r32, true, static_cast(step)), std::invalid_argument); diff --git a/testing/adios2/engine/bp/TestBPWriteReadVector.cpp b/testing/adios2/engine/bp/TestBPWriteReadVector.cpp index cf9ed24b64..595a6c5578 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadVector.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadVector.cpp @@ -68,30 +68,23 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteRead1D8) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -118,8 +111,8 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteRead1D8) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -182,8 +175,7 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteRead1D8) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_iString = io.InquireVariable("iString"); EXPECT_TRUE(var_iString); @@ -298,8 +290,8 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteRead1D8) var_r64.SetStepSelection({t, 1}); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); bpReader.Get(var_iString, IString); @@ -390,30 +382,23 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteRead2D2x4) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -433,8 +418,8 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteRead2D2x4) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -451,8 +436,7 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteRead2D2x4) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); @@ -496,8 +480,7 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteRead2D2x4) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_iString = io.InquireVariable("iString"); EXPECT_TRUE(var_iString); @@ -637,8 +620,8 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteRead2D2x4) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString, currentTestData.S1); @@ -707,34 +690,26 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteRead2D4x2) static_cast(mpiSize * Nx)}; adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -755,8 +730,8 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteRead2D4x2) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -772,8 +747,7 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteRead2D4x2) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -814,8 +788,7 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteRead2D4x2) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); @@ -950,8 +923,8 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteRead2D4x2) bpReader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { @@ -1016,30 +989,23 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteReadVector2D4x2_MultiSteps) adios2::Dims count{Ny, Nx}; auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -1060,8 +1026,8 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteReadVector2D4x2_MultiSteps) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_i8 = io.InquireVariable("i8"); @@ -1077,8 +1043,7 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteReadVector2D4x2_MultiSteps) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -1119,8 +1084,7 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteReadVector2D4x2_MultiSteps) io.SetEngine(engineName); } - adios2::Engine bpReader = - io.Open(fname, adios2::Mode::ReadRandomAccess); + adios2::Engine bpReader = io.Open(fname, adios2::Mode::ReadRandomAccess); auto var_i8 = io.InquireVariable("i8"); EXPECT_TRUE(var_i8); @@ -1255,8 +1219,8 @@ TEST_F(BPWriteReadVector, ADIOS2BPWriteReadVector2D4x2_MultiSteps) for (size_t t = tInitial; t < NSteps; ++t) { // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadBZIP2.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadBZIP2.cpp index 3fa3e3662a..4e1f7f86fb 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadBZIP2.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadBZIP2.cpp @@ -62,19 +62,17 @@ void BZIP2Accuracy1D(const std::string accuracy) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - adios2::Variable var_r32 = io.DefineVariable( - "r32", shape, start, count, adios2::ConstantDims); - adios2::Variable var_r64 = io.DefineVariable( - "r64", shape, start, count, adios2::ConstantDims); + adios2::Variable var_r32 = + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + adios2::Variable var_r64 = + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations adios2::Operator BZIP2Op = adios.DefineOperator("BZIP2Compressor", adios2::ops::LosslessBZIP2); - var_r32.AddOperation( - BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); - var_r64.AddOperation( - BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); + var_r32.AddOperation(BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); + var_r64.AddOperation(BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -198,19 +196,15 @@ void BZIP2Accuracy2D(const std::string accuracy) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations adios2::Operator BZIP2Op = adios.DefineOperator("BZIP2Compressor", adios2::ops::LosslessBZIP2); - var_r32.AddOperation( - BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); - var_r64.AddOperation( - BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); + var_r32.AddOperation(BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); + var_r64.AddOperation(BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -337,19 +331,15 @@ void BZIP2Accuracy3D(const std::string accuracy) const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations adios2::Operator BZIP2Op = adios.DefineOperator("BZIP2Compressor", adios2::ops::LosslessBZIP2); - var_r32.AddOperation( - BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); - var_r64.AddOperation( - BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); + var_r32.AddOperation(BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); + var_r64.AddOperation(BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -476,19 +466,15 @@ void BZIP2Accuracy1DSel(const std::string accuracy) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations adios2::Operator BZIP2Op = adios.DefineOperator("BZIP2Compressor", adios2::ops::LosslessBZIP2); - var_r32.AddOperation( - BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); - var_r64.AddOperation( - BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); + var_r32.AddOperation(BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); + var_r64.AddOperation(BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -612,19 +598,15 @@ void BZIP2Accuracy2DSel(const std::string accuracy) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations adios2::Operator BZIP2Op = adios.DefineOperator("BZIP2Compressor", adios2::ops::LosslessBZIP2); - var_r32.AddOperation( - BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); - var_r64.AddOperation( - BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); + var_r32.AddOperation(BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); + var_r64.AddOperation(BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -751,19 +733,15 @@ void BZIP2Accuracy3DSel(const std::string accuracy) const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations adios2::Operator BZIP2Op = adios.DefineOperator("BZIP2Compressor", adios2::ops::LosslessBZIP2); - var_r32.AddOperation( - BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); - var_r64.AddOperation( - BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); + var_r32.AddOperation(BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); + var_r64.AddOperation(BZIP2Op, {{adios2::ops::bzip2::key::blockSize100k, accuracy}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -831,10 +809,8 @@ void BZIP2Accuracy3DSel(const std::string accuracy) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_EQ(decompressedR32s[i], r32s[Nx / 2 * Ny * Nz + i]) - << msg; - ASSERT_EQ(decompressedR64s[i], r64s[Nx / 2 * Ny * Nz + i]) - << msg; + ASSERT_EQ(decompressedR32s[i], r32s[Nx / 2 * Ny * Nz + i]) << msg; + ASSERT_EQ(decompressedR64s[i], r64s[Nx / 2 * Ny * Nz + i]) << msg; } ++t; } @@ -853,42 +829,23 @@ class BPWriteReadBZIP2 : public ::testing::TestWithParam virtual void TearDown(){}; }; -TEST_P(BPWriteReadBZIP2, ADIOS2BPWriteReadBZIP21D) -{ - BZIP2Accuracy1D(GetParam()); -} -TEST_P(BPWriteReadBZIP2, ADIOS2BPWriteReadBZIP22D) -{ - BZIP2Accuracy2D(GetParam()); -} -TEST_P(BPWriteReadBZIP2, ADIOS2BPWriteReadBZIP23D) -{ - BZIP2Accuracy3D(GetParam()); -} -TEST_P(BPWriteReadBZIP2, ADIOS2BPWriteReadBZIP21DSel) -{ - BZIP2Accuracy1DSel(GetParam()); -} -TEST_P(BPWriteReadBZIP2, ADIOS2BPWriteReadBZIP22DSel) -{ - BZIP2Accuracy2DSel(GetParam()); -} -TEST_P(BPWriteReadBZIP2, ADIOS2BPWriteReadBZIP23DSel) -{ - BZIP2Accuracy3DSel(GetParam()); -} - -INSTANTIATE_TEST_SUITE_P( - BZIP2Accuracy, BPWriteReadBZIP2, - ::testing::Values(adios2::ops::bzip2::value::blockSize100k_1, - adios2::ops::bzip2::value::blockSize100k_2, - adios2::ops::bzip2::value::blockSize100k_3, - adios2::ops::bzip2::value::blockSize100k_4, - adios2::ops::bzip2::value::blockSize100k_5, - adios2::ops::bzip2::value::blockSize100k_6, - adios2::ops::bzip2::value::blockSize100k_7, - adios2::ops::bzip2::value::blockSize100k_8, - adios2::ops::bzip2::value::blockSize100k_9)); +TEST_P(BPWriteReadBZIP2, ADIOS2BPWriteReadBZIP21D) { BZIP2Accuracy1D(GetParam()); } +TEST_P(BPWriteReadBZIP2, ADIOS2BPWriteReadBZIP22D) { BZIP2Accuracy2D(GetParam()); } +TEST_P(BPWriteReadBZIP2, ADIOS2BPWriteReadBZIP23D) { BZIP2Accuracy3D(GetParam()); } +TEST_P(BPWriteReadBZIP2, ADIOS2BPWriteReadBZIP21DSel) { BZIP2Accuracy1DSel(GetParam()); } +TEST_P(BPWriteReadBZIP2, ADIOS2BPWriteReadBZIP22DSel) { BZIP2Accuracy2DSel(GetParam()); } +TEST_P(BPWriteReadBZIP2, ADIOS2BPWriteReadBZIP23DSel) { BZIP2Accuracy3DSel(GetParam()); } + +INSTANTIATE_TEST_SUITE_P(BZIP2Accuracy, BPWriteReadBZIP2, + ::testing::Values(adios2::ops::bzip2::value::blockSize100k_1, + adios2::ops::bzip2::value::blockSize100k_2, + adios2::ops::bzip2::value::blockSize100k_3, + adios2::ops::bzip2::value::blockSize100k_4, + adios2::ops::bzip2::value::blockSize100k_5, + adios2::ops::bzip2::value::blockSize100k_6, + adios2::ops::bzip2::value::blockSize100k_7, + adios2::ops::bzip2::value::blockSize100k_8, + adios2::ops::bzip2::value::blockSize100k_9)); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadBlosc.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadBlosc.cpp index b8c4a5933f..4f711437d8 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadBlosc.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadBlosc.cpp @@ -21,8 +21,8 @@ void BloscAccuracy1D(const std::string accuracy, const std::string threshold, { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWR_Blosc_1D_" + accuracy + "_" + threshold + - "_" + doshuffle + ".bp"); + const std::string fname("BPWR_Blosc_1D_" + accuracy + "_" + threshold + "_" + doshuffle + + ".bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -65,23 +65,21 @@ void BloscAccuracy1D(const std::string accuracy, const std::string threshold, const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - adios2::Variable var_r32 = io.DefineVariable( - "r32", shape, start, count, adios2::ConstantDims); - adios2::Variable var_r64 = io.DefineVariable( - "r64", shape, start, count, adios2::ConstantDims); + adios2::Variable var_r32 = + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + adios2::Variable var_r64 = + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations adios2::Operator BloscOp = adios.DefineOperator("BloscCompressor", adios2::ops::LosslessBlosc); - var_r32.AddOperation(BloscOp, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); - var_r64.AddOperation(BloscOp, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r32.AddOperation(BloscOp, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r64.AddOperation(BloscOp, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -162,8 +160,8 @@ void BloscAccuracy2D(const std::string accuracy, const std::string threshold, { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWRBlosc2D_" + accuracy + "_" + threshold + - threshold + "_" + doshuffle + ".bp"); + const std::string fname("BPWRBlosc2D_" + accuracy + "_" + threshold + threshold + "_" + + doshuffle + ".bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -207,23 +205,19 @@ void BloscAccuracy2D(const std::string accuracy, const std::string threshold, const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations adios2::Operator BloscOp = adios.DefineOperator("BloscCompressor", adios2::ops::LosslessBlosc); - var_r32.AddOperation(BloscOp, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); - var_r64.AddOperation(BloscOp, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r32.AddOperation(BloscOp, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r64.AddOperation(BloscOp, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -306,8 +300,8 @@ void BloscAccuracy3D(const std::string accuracy, const std::string threshold, { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWRBlosc3D_" + accuracy + "_" + threshold + - threshold + "_" + doshuffle + ".bp"); + const std::string fname("BPWRBlosc3D_" + accuracy + "_" + threshold + threshold + "_" + + doshuffle + ".bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -352,23 +346,19 @@ void BloscAccuracy3D(const std::string accuracy, const std::string threshold, const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations adios2::Operator BloscOp = adios.DefineOperator("BloscCompressor", adios2::ops::LosslessBlosc); - var_r32.AddOperation(BloscOp, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); - var_r64.AddOperation(BloscOp, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r32.AddOperation(BloscOp, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r64.AddOperation(BloscOp, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -453,8 +443,8 @@ void BloscAccuracy1DSel(const std::string accuracy, const std::string threshold, { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWRBlosc1DSel_" + accuracy + "_" + threshold + - threshold + "_" + doshuffle + ".bp"); + const std::string fname("BPWRBlosc1DSel_" + accuracy + "_" + threshold + threshold + "_" + + doshuffle + ".bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -497,23 +487,19 @@ void BloscAccuracy1DSel(const std::string accuracy, const std::string threshold, const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations adios2::Operator BloscOp = adios.DefineOperator("BloscCompressor", adios2::ops::LosslessBlosc); - var_r32.AddOperation(BloscOp, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); - var_r64.AddOperation(BloscOp, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r32.AddOperation(BloscOp, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r64.AddOperation(BloscOp, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -594,8 +580,8 @@ void BloscAccuracy2DSel(const std::string accuracy, const std::string threshold, { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWRBlosc2DSel_" + accuracy + "_" + threshold + - threshold + "_" + doshuffle + ".bp"); + const std::string fname("BPWRBlosc2DSel_" + accuracy + "_" + threshold + threshold + "_" + + doshuffle + ".bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -639,23 +625,19 @@ void BloscAccuracy2DSel(const std::string accuracy, const std::string threshold, const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations adios2::Operator BloscOp = adios.DefineOperator("BloscCompressor", adios2::ops::LosslessBlosc); - var_r32.AddOperation(BloscOp, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); - var_r64.AddOperation(BloscOp, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r32.AddOperation(BloscOp, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r64.AddOperation(BloscOp, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -738,8 +720,8 @@ void BloscAccuracy3DSel(const std::string accuracy, const std::string threshold, { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWRBlosc3DSel_" + accuracy + "_" + threshold + - threshold + "_" + doshuffle + ".bp"); + const std::string fname("BPWRBlosc3DSel_" + accuracy + "_" + threshold + threshold + "_" + + doshuffle + ".bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -784,23 +766,19 @@ void BloscAccuracy3DSel(const std::string accuracy, const std::string threshold, const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations adios2::Operator BloscOp = adios.DefineOperator("BloscCompressor", adios2::ops::LosslessBlosc); - var_r32.AddOperation(BloscOp, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::doshuffle, doshuffle}, - {adios2::ops::blosc::key::threshold, threshold}}); - var_r64.AddOperation(BloscOp, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r32.AddOperation(BloscOp, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::doshuffle, doshuffle}, + {adios2::ops::blosc::key::threshold, threshold}}); + var_r64.AddOperation(BloscOp, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -868,10 +846,8 @@ void BloscAccuracy3DSel(const std::string accuracy, const std::string threshold, ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_EQ(decompressedR32s[i], r32s[Nx / 2 * Ny * Nz + i]) - << msg; - ASSERT_EQ(decompressedR64s[i], r64s[Nx / 2 * Ny * Nz + i]) - << msg; + ASSERT_EQ(decompressedR32s[i], r32s[Nx / 2 * Ny * Nz + i]) << msg; + ASSERT_EQ(decompressedR64s[i], r64s[Nx / 2 * Ny * Nz + i]) << msg; } ++t; } @@ -882,8 +858,8 @@ void BloscAccuracy3DSel(const std::string accuracy, const std::string threshold, } } -class BPWriteReadBlosc : public ::testing::TestWithParam< - std::tuple> +class BPWriteReadBlosc +: public ::testing::TestWithParam> { public: BPWriteReadBlosc() = default; @@ -893,47 +869,37 @@ class BPWriteReadBlosc : public ::testing::TestWithParam< TEST_P(BPWriteReadBlosc, ADIOS2BPWriteReadBlosc1D) { - BloscAccuracy1D(std::get<0>(GetParam()), std::get<1>(GetParam()), - std::get<2>(GetParam())); + BloscAccuracy1D(std::get<0>(GetParam()), std::get<1>(GetParam()), std::get<2>(GetParam())); } TEST_P(BPWriteReadBlosc, ADIOS2BPWriteReadBlosc2D) { - BloscAccuracy2D(std::get<0>(GetParam()), std::get<1>(GetParam()), - std::get<2>(GetParam())); + BloscAccuracy2D(std::get<0>(GetParam()), std::get<1>(GetParam()), std::get<2>(GetParam())); } TEST_P(BPWriteReadBlosc, ADIOS2BPWriteReadBlosc3D) { - BloscAccuracy3D(std::get<0>(GetParam()), std::get<1>(GetParam()), - std::get<2>(GetParam())); + BloscAccuracy3D(std::get<0>(GetParam()), std::get<1>(GetParam()), std::get<2>(GetParam())); } TEST_P(BPWriteReadBlosc, ADIOS2BPWriteReadBlosc1DSel) { - BloscAccuracy1DSel(std::get<0>(GetParam()), std::get<1>(GetParam()), - std::get<2>(GetParam())); + BloscAccuracy1DSel(std::get<0>(GetParam()), std::get<1>(GetParam()), std::get<2>(GetParam())); } TEST_P(BPWriteReadBlosc, ADIOS2BPWriteReadBlosc2DSel) { - BloscAccuracy2DSel(std::get<0>(GetParam()), std::get<1>(GetParam()), - std::get<2>(GetParam())); + BloscAccuracy2DSel(std::get<0>(GetParam()), std::get<1>(GetParam()), std::get<2>(GetParam())); } TEST_P(BPWriteReadBlosc, ADIOS2BPWriteReadBlosc3DSel) { - BloscAccuracy3DSel(std::get<0>(GetParam()), std::get<1>(GetParam()), - std::get<2>(GetParam())); + BloscAccuracy3DSel(std::get<0>(GetParam()), std::get<1>(GetParam()), std::get<2>(GetParam())); } INSTANTIATE_TEST_SUITE_P( BloscAccuracy, BPWriteReadBlosc, ::testing::Combine( // test compression level - ::testing::Values(adios2::ops::blosc::value::clevel_1, - adios2::ops::blosc::value::clevel_2, - adios2::ops::blosc::value::clevel_3, - adios2::ops::blosc::value::clevel_4, - adios2::ops::blosc::value::clevel_5, - adios2::ops::blosc::value::clevel_6, - adios2::ops::blosc::value::clevel_7, - adios2::ops::blosc::value::clevel_8, + ::testing::Values(adios2::ops::blosc::value::clevel_1, adios2::ops::blosc::value::clevel_2, + adios2::ops::blosc::value::clevel_3, adios2::ops::blosc::value::clevel_4, + adios2::ops::blosc::value::clevel_5, adios2::ops::blosc::value::clevel_6, + adios2::ops::blosc::value::clevel_7, adios2::ops::blosc::value::clevel_8, adios2::ops::blosc::value::clevel_9), // test threshold: 128 is equal to the default, 1 GiB is used to disable // compression diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadBlosc2.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadBlosc2.cpp index 5648156c62..7295eff60f 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadBlosc2.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadBlosc2.cpp @@ -21,8 +21,8 @@ void Blosc2Accuracy1D(const std::string accuracy, const std::string threshold, { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWR_Blosc2_1D_" + accuracy + "_" + threshold + - "_" + doshuffle + ".bp"); + const std::string fname("BPWR_Blosc2_1D_" + accuracy + "_" + threshold + "_" + doshuffle + + ".bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -65,23 +65,21 @@ void Blosc2Accuracy1D(const std::string accuracy, const std::string threshold, const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - adios2::Variable var_r32 = io.DefineVariable( - "r32", shape, start, count, adios2::ConstantDims); - adios2::Variable var_r64 = io.DefineVariable( - "r64", shape, start, count, adios2::ConstantDims); + adios2::Variable var_r32 = + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + adios2::Variable var_r64 = + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator Blosc2Op = adios.DefineOperator( - "Blosc2Compressor", adios2::ops::LosslessBlosc); - - var_r32.AddOperation(Blosc2Op, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); - var_r64.AddOperation(Blosc2Op, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); + adios2::Operator Blosc2Op = + adios.DefineOperator("Blosc2Compressor", adios2::ops::LosslessBlosc); + + var_r32.AddOperation(Blosc2Op, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r64.AddOperation(Blosc2Op, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -162,8 +160,8 @@ void Blosc2Accuracy2D(const std::string accuracy, const std::string threshold, { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWRBlosc22D_" + accuracy + "_" + threshold + - threshold + "_" + doshuffle + ".bp"); + const std::string fname("BPWRBlosc22D_" + accuracy + "_" + threshold + threshold + "_" + + doshuffle + ".bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -207,23 +205,19 @@ void Blosc2Accuracy2D(const std::string accuracy, const std::string threshold, const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator Blosc2Op = adios.DefineOperator( - "Blosc2Compressor", adios2::ops::LosslessBlosc); - - var_r32.AddOperation(Blosc2Op, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); - var_r64.AddOperation(Blosc2Op, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); + adios2::Operator Blosc2Op = + adios.DefineOperator("Blosc2Compressor", adios2::ops::LosslessBlosc); + + var_r32.AddOperation(Blosc2Op, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r64.AddOperation(Blosc2Op, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -306,8 +300,8 @@ void Blosc2Accuracy3D(const std::string accuracy, const std::string threshold, { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWRBlosc23D_" + accuracy + "_" + threshold + - threshold + "_" + doshuffle + ".bp"); + const std::string fname("BPWRBlosc23D_" + accuracy + "_" + threshold + threshold + "_" + + doshuffle + ".bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -352,23 +346,19 @@ void Blosc2Accuracy3D(const std::string accuracy, const std::string threshold, const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator Blosc2Op = adios.DefineOperator( - "Blosc2Compressor", adios2::ops::LosslessBlosc); - - var_r32.AddOperation(Blosc2Op, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); - var_r64.AddOperation(Blosc2Op, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); + adios2::Operator Blosc2Op = + adios.DefineOperator("Blosc2Compressor", adios2::ops::LosslessBlosc); + + var_r32.AddOperation(Blosc2Op, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r64.AddOperation(Blosc2Op, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -448,14 +438,13 @@ void Blosc2Accuracy3D(const std::string accuracy, const std::string threshold, } } -void Blosc2Accuracy1DSel(const std::string accuracy, - const std::string threshold, +void Blosc2Accuracy1DSel(const std::string accuracy, const std::string threshold, const std::string doshuffle) { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWRBlosc21DSel_" + accuracy + "_" + threshold + - threshold + "_" + doshuffle + ".bp"); + const std::string fname("BPWRBlosc21DSel_" + accuracy + "_" + threshold + threshold + "_" + + doshuffle + ".bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -498,23 +487,19 @@ void Blosc2Accuracy1DSel(const std::string accuracy, const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator Blosc2Op = adios.DefineOperator( - "Blosc2Compressor", adios2::ops::LosslessBlosc); - - var_r32.AddOperation(Blosc2Op, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); - var_r64.AddOperation(Blosc2Op, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); + adios2::Operator Blosc2Op = + adios.DefineOperator("Blosc2Compressor", adios2::ops::LosslessBlosc); + + var_r32.AddOperation(Blosc2Op, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r64.AddOperation(Blosc2Op, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -590,14 +575,13 @@ void Blosc2Accuracy1DSel(const std::string accuracy, } } -void Blosc2Accuracy2DSel(const std::string accuracy, - const std::string threshold, +void Blosc2Accuracy2DSel(const std::string accuracy, const std::string threshold, const std::string doshuffle) { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWRBlosc22DSel_" + accuracy + "_" + threshold + - threshold + "_" + doshuffle + ".bp"); + const std::string fname("BPWRBlosc22DSel_" + accuracy + "_" + threshold + threshold + "_" + + doshuffle + ".bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -641,23 +625,19 @@ void Blosc2Accuracy2DSel(const std::string accuracy, const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator Blosc2Op = adios.DefineOperator( - "Blosc2Compressor", adios2::ops::LosslessBlosc); - - var_r32.AddOperation(Blosc2Op, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); - var_r64.AddOperation(Blosc2Op, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); + adios2::Operator Blosc2Op = + adios.DefineOperator("Blosc2Compressor", adios2::ops::LosslessBlosc); + + var_r32.AddOperation(Blosc2Op, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); + var_r64.AddOperation(Blosc2Op, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -735,14 +715,13 @@ void Blosc2Accuracy2DSel(const std::string accuracy, } } -void Blosc2Accuracy3DSel(const std::string accuracy, - const std::string threshold, +void Blosc2Accuracy3DSel(const std::string accuracy, const std::string threshold, const std::string doshuffle) { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWRBlosc23DSel_" + accuracy + "_" + threshold + - threshold + "_" + doshuffle + ".bp"); + const std::string fname("BPWRBlosc23DSel_" + accuracy + "_" + threshold + threshold + "_" + + doshuffle + ".bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -787,23 +766,19 @@ void Blosc2Accuracy3DSel(const std::string accuracy, const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator Blosc2Op = adios.DefineOperator( - "Blosc2Compressor", adios2::ops::LosslessBlosc); - - var_r32.AddOperation(Blosc2Op, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::doshuffle, doshuffle}, - {adios2::ops::blosc::key::threshold, threshold}}); - var_r64.AddOperation(Blosc2Op, - {{adios2::ops::blosc::key::clevel, accuracy}, - {adios2::ops::blosc::key::threshold, threshold}, - {adios2::ops::blosc::key::doshuffle, doshuffle}}); + adios2::Operator Blosc2Op = + adios.DefineOperator("Blosc2Compressor", adios2::ops::LosslessBlosc); + + var_r32.AddOperation(Blosc2Op, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::doshuffle, doshuffle}, + {adios2::ops::blosc::key::threshold, threshold}}); + var_r64.AddOperation(Blosc2Op, {{adios2::ops::blosc::key::clevel, accuracy}, + {adios2::ops::blosc::key::threshold, threshold}, + {adios2::ops::blosc::key::doshuffle, doshuffle}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -871,10 +846,8 @@ void Blosc2Accuracy3DSel(const std::string accuracy, ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_EQ(decompressedR32s[i], r32s[Nx / 2 * Ny * Nz + i]) - << msg; - ASSERT_EQ(decompressedR64s[i], r64s[Nx / 2 * Ny * Nz + i]) - << msg; + ASSERT_EQ(decompressedR32s[i], r32s[Nx / 2 * Ny * Nz + i]) << msg; + ASSERT_EQ(decompressedR64s[i], r64s[Nx / 2 * Ny * Nz + i]) << msg; } ++t; } @@ -885,8 +858,8 @@ void Blosc2Accuracy3DSel(const std::string accuracy, } } -class BPWriteReadBlosc2 : public ::testing::TestWithParam< - std::tuple> +class BPWriteReadBlosc2 +: public ::testing::TestWithParam> { public: BPWriteReadBlosc2() = default; @@ -896,47 +869,37 @@ class BPWriteReadBlosc2 : public ::testing::TestWithParam< TEST_P(BPWriteReadBlosc2, ADIOS2BPWriteReadBlosc21D) { - Blosc2Accuracy1D(std::get<0>(GetParam()), std::get<1>(GetParam()), - std::get<2>(GetParam())); + Blosc2Accuracy1D(std::get<0>(GetParam()), std::get<1>(GetParam()), std::get<2>(GetParam())); } TEST_P(BPWriteReadBlosc2, ADIOS2BPWriteReadBlosc22D) { - Blosc2Accuracy2D(std::get<0>(GetParam()), std::get<1>(GetParam()), - std::get<2>(GetParam())); + Blosc2Accuracy2D(std::get<0>(GetParam()), std::get<1>(GetParam()), std::get<2>(GetParam())); } TEST_P(BPWriteReadBlosc2, ADIOS2BPWriteReadBlosc23D) { - Blosc2Accuracy3D(std::get<0>(GetParam()), std::get<1>(GetParam()), - std::get<2>(GetParam())); + Blosc2Accuracy3D(std::get<0>(GetParam()), std::get<1>(GetParam()), std::get<2>(GetParam())); } TEST_P(BPWriteReadBlosc2, ADIOS2BPWriteReadBlosc21DSel) { - Blosc2Accuracy1DSel(std::get<0>(GetParam()), std::get<1>(GetParam()), - std::get<2>(GetParam())); + Blosc2Accuracy1DSel(std::get<0>(GetParam()), std::get<1>(GetParam()), std::get<2>(GetParam())); } TEST_P(BPWriteReadBlosc2, ADIOS2BPWriteReadBlosc22DSel) { - Blosc2Accuracy2DSel(std::get<0>(GetParam()), std::get<1>(GetParam()), - std::get<2>(GetParam())); + Blosc2Accuracy2DSel(std::get<0>(GetParam()), std::get<1>(GetParam()), std::get<2>(GetParam())); } TEST_P(BPWriteReadBlosc2, ADIOS2BPWriteReadBlosc23DSel) { - Blosc2Accuracy3DSel(std::get<0>(GetParam()), std::get<1>(GetParam()), - std::get<2>(GetParam())); + Blosc2Accuracy3DSel(std::get<0>(GetParam()), std::get<1>(GetParam()), std::get<2>(GetParam())); } INSTANTIATE_TEST_SUITE_P( Blosc2Accuracy, BPWriteReadBlosc2, ::testing::Combine( // test compression level - ::testing::Values(adios2::ops::blosc::value::clevel_1, - adios2::ops::blosc::value::clevel_2, - adios2::ops::blosc::value::clevel_3, - adios2::ops::blosc::value::clevel_4, - adios2::ops::blosc::value::clevel_5, - adios2::ops::blosc::value::clevel_6, - adios2::ops::blosc::value::clevel_7, - adios2::ops::blosc::value::clevel_8, + ::testing::Values(adios2::ops::blosc::value::clevel_1, adios2::ops::blosc::value::clevel_2, + adios2::ops::blosc::value::clevel_3, adios2::ops::blosc::value::clevel_4, + adios2::ops::blosc::value::clevel_5, adios2::ops::blosc::value::clevel_6, + adios2::ops::blosc::value::clevel_7, adios2::ops::blosc::value::clevel_8, adios2::ops::blosc::value::clevel_9), // test threshold: 128 is equal to the default, 1 GiB is used to disable // compression diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadLocalVariables.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadLocalVariables.cpp index 0643a8adc5..ec36175659 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadLocalVariables.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadLocalVariables.cpp @@ -61,33 +61,21 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) io.DefineVariable("stepsGlobalValue"); io.DefineVariable("stepsGlobalValueString"); - io.DefineVariable("ranksLocalValue", - {adios2::LocalValueDim}); - io.DefineVariable("ranksLocalValueString", - {adios2::LocalValueDim}); - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("ranksLocalValue", {adios2::LocalValueDim}); + io.DefineVariable("ranksLocalValueString", {adios2::LocalValueDim}); + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -99,8 +87,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -108,12 +96,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) const int32_t step32 = static_cast(step); bpWriter.Put("stepsGlobalValue", step32); - bpWriter.Put("stepsGlobalValueString", - std::to_string(step)); + bpWriter.Put("stepsGlobalValueString", std::to_string(step)); bpWriter.Put("ranksLocalValue", mpiRank); - bpWriter.Put("ranksLocalValueString", - std::to_string(mpiRank)); + bpWriter.Put("ranksLocalValueString", std::to_string(mpiRank)); bpWriter.Put("i8", currentTestData.I8.data()); bpWriter.Put("i16", currentTestData.I16.data()); @@ -125,10 +111,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) bpWriter.Put("u64", currentTestData.U64.data()); bpWriter.Put("r32", currentTestData.R32.data()); bpWriter.Put("r64", currentTestData.R64.data()); - bpWriter.Put>("cr32", - currentTestData.CR32.data()); - bpWriter.Put>("cr64", - currentTestData.CR64.data()); + bpWriter.Put>("cr32", currentTestData.CR32.data()); + bpWriter.Put>("cr64", currentTestData.CR64.data()); bpWriter.EndStep(); } @@ -162,12 +146,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); - auto var_StepsGlobalValue = - io.InquireVariable("stepsGlobalValue"); + auto var_StepsGlobalValue = io.InquireVariable("stepsGlobalValue"); auto var_StepsGlobalValueString = io.InquireVariable("stepsGlobalValueString"); - auto var_RanksLocalValue = - io.InquireVariable("ranksLocalValue"); + auto var_RanksLocalValue = io.InquireVariable("ranksLocalValue"); auto var_RanksLocalValueString = io.InquireVariable("ranksLocalValueString"); @@ -186,32 +168,27 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) // Global value EXPECT_TRUE(var_StepsGlobalValue); - EXPECT_EQ(var_StepsGlobalValue.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValue.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValue.Steps(), NSteps); EXPECT_EQ(var_StepsGlobalValue.Shape().size(), 0); EXPECT_EQ(var_StepsGlobalValue.Min(), 0); EXPECT_EQ(var_StepsGlobalValue.Max(), NSteps - 1); int32_t stepsGlobalValueData; - bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, - adios2::Mode::Sync); + bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, adios2::Mode::Sync); EXPECT_EQ(stepsGlobalValueData, currentStep); EXPECT_TRUE(var_StepsGlobalValueString); - EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValueString.Steps(), NSteps); EXPECT_EQ(var_StepsGlobalValueString.Shape().size(), 0); std::string stepsGlobalValueStringDataString; - bpReader.Get(var_StepsGlobalValueString, - stepsGlobalValueStringDataString, adios2::Mode::Sync); - EXPECT_EQ(stepsGlobalValueStringDataString, - std::to_string(currentStep)); + bpReader.Get(var_StepsGlobalValueString, stepsGlobalValueStringDataString, + adios2::Mode::Sync); + EXPECT_EQ(stepsGlobalValueStringDataString, std::to_string(currentStep)); // Local values will be read as 1D GlobalArrays EXPECT_TRUE(var_RanksLocalValue); - EXPECT_EQ(var_RanksLocalValue.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValue.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Steps(), NSteps); EXPECT_EQ(var_RanksLocalValue.Shape().size(), 1); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); @@ -226,14 +203,12 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) } EXPECT_TRUE(var_RanksLocalValueString); - EXPECT_EQ(var_RanksLocalValueString.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValueString.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Steps(), NSteps); EXPECT_EQ(var_RanksLocalValue.Shape().size(), 1); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); std::vector rankLocalValueDataString; - bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, - adios2::Mode::Sync); + bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, adios2::Mode::Sync); EXPECT_EQ(rankLocalValueData.size(), mpiSize); for (int32_t r = 0; r < rankLocalValueData.size(); ++r) { @@ -349,8 +324,7 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) bpReader.PerformGets(); SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(currentStep), - static_cast(b), mpiSize); + m_TestData, static_cast(currentStep), static_cast(b), mpiSize); for (size_t i = 0; i < Nx; ++i) { @@ -436,33 +410,21 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) io.DefineVariable("stepsGlobalValue"); io.DefineVariable("stepsGlobalValueString"); - io.DefineVariable("ranksLocalValue", - {adios2::LocalValueDim}); - io.DefineVariable("ranksLocalValueString", - {adios2::LocalValueDim}); - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("ranksLocalValue", {adios2::LocalValueDim}); + io.DefineVariable("ranksLocalValueString", {adios2::LocalValueDim}); + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -474,8 +436,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -483,12 +445,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) const int32_t step32 = static_cast(step); bpWriter.Put("stepsGlobalValue", step32); - bpWriter.Put("stepsGlobalValueString", - std::to_string(step)); + bpWriter.Put("stepsGlobalValueString", std::to_string(step)); bpWriter.Put("ranksLocalValue", mpiRank); - bpWriter.Put("ranksLocalValueString", - std::to_string(mpiRank)); + bpWriter.Put("ranksLocalValueString", std::to_string(mpiRank)); bpWriter.Put("i8", currentTestData.I8.data()); bpWriter.Put("i16", currentTestData.I16.data()); @@ -500,10 +460,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) bpWriter.Put("u64", currentTestData.U64.data()); bpWriter.Put("r32", currentTestData.R32.data()); bpWriter.Put("r64", currentTestData.R64.data()); - bpWriter.Put>("cr32", - currentTestData.CR32.data()); - bpWriter.Put>("cr64", - currentTestData.CR64.data()); + bpWriter.Put>("cr32", currentTestData.CR32.data()); + bpWriter.Put>("cr64", currentTestData.CR64.data()); bpWriter.EndStep(); } @@ -537,12 +495,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); - auto var_StepsGlobalValue = - io.InquireVariable("stepsGlobalValue"); + auto var_StepsGlobalValue = io.InquireVariable("stepsGlobalValue"); auto var_StepsGlobalValueString = io.InquireVariable("stepsGlobalValueString"); - auto var_RanksLocalValue = - io.InquireVariable("ranksLocalValue"); + auto var_RanksLocalValue = io.InquireVariable("ranksLocalValue"); auto var_RanksLocalValueString = io.InquireVariable("ranksLocalValueString"); @@ -561,32 +517,27 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) // Global value EXPECT_TRUE(var_StepsGlobalValue); - EXPECT_EQ(var_StepsGlobalValue.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValue.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValue.Steps(), NSteps); EXPECT_EQ(var_StepsGlobalValue.Shape().size(), 0); EXPECT_EQ(var_StepsGlobalValue.Min(), 0); EXPECT_EQ(var_StepsGlobalValue.Max(), NSteps - 1); int32_t stepsGlobalValueData; - bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, - adios2::Mode::Sync); + bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, adios2::Mode::Sync); EXPECT_EQ(stepsGlobalValueData, currentStep); EXPECT_TRUE(var_StepsGlobalValueString); - EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValueString.Steps(), NSteps); EXPECT_EQ(var_StepsGlobalValueString.Shape().size(), 0); std::string stepsGlobalValueStringDataString; - bpReader.Get(var_StepsGlobalValueString, - stepsGlobalValueStringDataString, adios2::Mode::Sync); - EXPECT_EQ(stepsGlobalValueStringDataString, - std::to_string(currentStep)); + bpReader.Get(var_StepsGlobalValueString, stepsGlobalValueStringDataString, + adios2::Mode::Sync); + EXPECT_EQ(stepsGlobalValueStringDataString, std::to_string(currentStep)); // Local values are read as 1D Global Arrays EXPECT_TRUE(var_RanksLocalValue); - EXPECT_EQ(var_RanksLocalValue.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValue.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Steps(), NSteps); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); EXPECT_EQ(var_RanksLocalValue.Min(), 0); @@ -600,13 +551,11 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) } EXPECT_TRUE(var_RanksLocalValueString); - EXPECT_EQ(var_RanksLocalValueString.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValueString.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Steps(), NSteps); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); std::vector rankLocalValueDataString; - bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, - adios2::Mode::Sync); + bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, adios2::Mode::Sync); EXPECT_EQ(rankLocalValueData.size(), mpiSize); for (int32_t r = 0; r < rankLocalValueData.size(); ++r) { @@ -730,8 +679,7 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D2x4) bpReader.PerformGets(); SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(currentStep), - static_cast(b), mpiSize); + m_TestData, static_cast(currentStep), static_cast(b), mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { @@ -817,33 +765,21 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D4x2) io.DefineVariable("stepsGlobalValue"); io.DefineVariable("stepsGlobalValueString"); - io.DefineVariable("ranksLocalValue", - {adios2::LocalValueDim}); - io.DefineVariable("ranksLocalValueString", - {adios2::LocalValueDim}); - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("ranksLocalValue", {adios2::LocalValueDim}); + io.DefineVariable("ranksLocalValueString", {adios2::LocalValueDim}); + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -855,20 +791,18 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D4x2) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); bpWriter.BeginStep(); const int32_t step32 = static_cast(step); bpWriter.Put("stepsGlobalValue", step32); - bpWriter.Put("stepsGlobalValueString", - std::to_string(step)); + bpWriter.Put("stepsGlobalValueString", std::to_string(step)); bpWriter.Put("ranksLocalValue", mpiRank); - bpWriter.Put("ranksLocalValueString", - std::to_string(mpiRank)); + bpWriter.Put("ranksLocalValueString", std::to_string(mpiRank)); bpWriter.Put("i8", currentTestData.I8.data()); bpWriter.Put("i16", currentTestData.I16.data()); @@ -880,10 +814,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D4x2) bpWriter.Put("u64", currentTestData.U64.data()); bpWriter.Put("r32", currentTestData.R32.data()); bpWriter.Put("r64", currentTestData.R64.data()); - bpWriter.Put>("cr32", - currentTestData.CR32.data()); - bpWriter.Put>("cr64", - currentTestData.CR64.data()); + bpWriter.Put>("cr32", currentTestData.CR32.data()); + bpWriter.Put>("cr64", currentTestData.CR64.data()); bpWriter.EndStep(); } @@ -917,12 +849,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D4x2) const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); - auto var_StepsGlobalValue = - io.InquireVariable("stepsGlobalValue"); + auto var_StepsGlobalValue = io.InquireVariable("stepsGlobalValue"); auto var_StepsGlobalValueString = io.InquireVariable("stepsGlobalValueString"); - auto var_RanksLocalValue = - io.InquireVariable("ranksLocalValue"); + auto var_RanksLocalValue = io.InquireVariable("ranksLocalValue"); auto var_RanksLocalValueString = io.InquireVariable("ranksLocalValueString"); @@ -941,32 +871,27 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D4x2) // Global value EXPECT_TRUE(var_StepsGlobalValue); - EXPECT_EQ(var_StepsGlobalValue.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValue.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValue.Steps(), NSteps); EXPECT_EQ(var_StepsGlobalValue.Shape().size(), 0); EXPECT_EQ(var_StepsGlobalValue.Min(), 0); EXPECT_EQ(var_StepsGlobalValue.Max(), NSteps - 1); int32_t stepsGlobalValueData; - bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, - adios2::Mode::Sync); + bpReader.Get(var_StepsGlobalValue, stepsGlobalValueData, adios2::Mode::Sync); EXPECT_EQ(stepsGlobalValueData, currentStep); EXPECT_TRUE(var_StepsGlobalValueString); - EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), - adios2::ShapeID::GlobalValue); + EXPECT_EQ(var_StepsGlobalValueString.ShapeID(), adios2::ShapeID::GlobalValue); EXPECT_EQ(var_StepsGlobalValueString.Steps(), NSteps); EXPECT_EQ(var_StepsGlobalValueString.Shape().size(), 0); std::string stepsGlobalValueStringDataString; - bpReader.Get(var_StepsGlobalValueString, - stepsGlobalValueStringDataString, adios2::Mode::Sync); - EXPECT_EQ(stepsGlobalValueStringDataString, - std::to_string(currentStep)); + bpReader.Get(var_StepsGlobalValueString, stepsGlobalValueStringDataString, + adios2::Mode::Sync); + EXPECT_EQ(stepsGlobalValueStringDataString, std::to_string(currentStep)); // Local values are read as 1D Global Arrays EXPECT_TRUE(var_RanksLocalValue); - EXPECT_EQ(var_RanksLocalValue.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValue.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Steps(), NSteps); EXPECT_EQ(var_RanksLocalValue.Shape().size(), 1); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); @@ -981,14 +906,12 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D4x2) } EXPECT_TRUE(var_RanksLocalValueString); - EXPECT_EQ(var_RanksLocalValueString.ShapeID(), - adios2::ShapeID::GlobalArray); + EXPECT_EQ(var_RanksLocalValueString.ShapeID(), adios2::ShapeID::GlobalArray); EXPECT_EQ(var_RanksLocalValue.Steps(), NSteps); EXPECT_EQ(var_RanksLocalValue.Shape().size(), 1); EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); std::vector rankLocalValueDataString; - bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, - adios2::Mode::Sync); + bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, adios2::Mode::Sync); EXPECT_EQ(rankLocalValueData.size(), mpiSize); for (int32_t r = 0; r < rankLocalValueData.size(); ++r) { @@ -1112,8 +1035,7 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal2D4x2) bpReader.PerformGets(); SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(currentStep), - static_cast(b), mpiSize); + m_TestData, static_cast(currentStep), static_cast(b), mpiSize); for (size_t i = 0; i < Nx * Ny; ++i) { @@ -1199,33 +1121,21 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) io.DefineVariable("stepsGlobalValue"); io.DefineVariable("stepsGlobalValueString"); - io.DefineVariable("ranksLocalValue", - {adios2::LocalValueDim}); - io.DefineVariable("ranksLocalValueString", - {adios2::LocalValueDim}); - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("ranksLocalValue", {adios2::LocalValueDim}); + io.DefineVariable("ranksLocalValueString", {adios2::LocalValueDim}); + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -1237,8 +1147,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -1246,12 +1156,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) const int32_t step32 = static_cast(step); bpWriter.Put("stepsGlobalValue", step32); - bpWriter.Put("stepsGlobalValueString", - std::to_string(step)); + bpWriter.Put("stepsGlobalValueString", std::to_string(step)); bpWriter.Put("ranksLocalValue", mpiRank); - bpWriter.Put("ranksLocalValueString", - std::to_string(mpiRank)); + bpWriter.Put("ranksLocalValueString", std::to_string(mpiRank)); bpWriter.Put("i8", currentTestData.I8.data()); bpWriter.Put("i16", currentTestData.I16.data()); @@ -1263,10 +1171,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) bpWriter.Put("u64", currentTestData.U64.data()); bpWriter.Put("r32", currentTestData.R32.data()); bpWriter.Put("r64", currentTestData.R64.data()); - bpWriter.Put>("cr32", - currentTestData.CR32.data()); - bpWriter.Put>("cr64", - currentTestData.CR64.data()); + bpWriter.Put>("cr32", currentTestData.CR32.data()); + bpWriter.Put>("cr64", currentTestData.CR64.data()); bpWriter.EndStep(); } @@ -1294,14 +1200,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) size_t t = 0; - auto var_StepsGlobalValue = - io.InquireVariable("stepsGlobalValue"); - auto var_StepsGlobalValueString = - io.InquireVariable("stepsGlobalValueString"); - auto var_RanksLocalValue = - io.InquireVariable("ranksLocalValue"); - auto var_RanksLocalValueString = - io.InquireVariable("ranksLocalValueString"); + auto var_StepsGlobalValue = io.InquireVariable("stepsGlobalValue"); + auto var_StepsGlobalValueString = io.InquireVariable("stepsGlobalValueString"); + auto var_RanksLocalValue = io.InquireVariable("ranksLocalValue"); + auto var_RanksLocalValueString = io.InquireVariable("ranksLocalValueString"); auto var_i8 = io.InquireVariable("i8"); auto var_i16 = io.InquireVariable("i16"); @@ -1317,14 +1219,11 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) auto var_cr64 = io.InquireVariable>("cr64"); // Read all steps at once - var_StepsGlobalValue.SetStepSelection( - {0, var_StepsGlobalValue.Steps()}); - var_StepsGlobalValueString.SetStepSelection( - {0, var_StepsGlobalValueString.Steps()}); + var_StepsGlobalValue.SetStepSelection({0, var_StepsGlobalValue.Steps()}); + var_StepsGlobalValueString.SetStepSelection({0, var_StepsGlobalValueString.Steps()}); var_RanksLocalValue.SetStepSelection({0, var_RanksLocalValue.Steps()}); - var_RanksLocalValueString.SetStepSelection( - {0, var_RanksLocalValueString.Steps()}); + var_RanksLocalValueString.SetStepSelection({0, var_RanksLocalValueString.Steps()}); var_i8.SetStepSelection({0, var_i8.Steps()}); var_i16.SetStepSelection({0, var_i16.Steps()}); @@ -1378,9 +1277,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) for (size_t s = 0; s < NSteps; ++s) { - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, static_cast(s), - static_cast(b), mpiSize); + SmallTestData currentTestData = generateNewSmallTestData( + m_TestData, static_cast(s), static_cast(b), mpiSize); for (size_t i = 0; i < Nx; ++i) { @@ -1391,39 +1289,29 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DAllSteps) if (var_i8) ASSERT_EQ(I8[s * Nx + i], currentTestData.I8[i]) << msg; if (var_i16) - ASSERT_EQ(I16[s * Nx + i], currentTestData.I16[i]) - << msg; + ASSERT_EQ(I16[s * Nx + i], currentTestData.I16[i]) << msg; if (var_i32) - EXPECT_EQ(I32[s * Nx + i], currentTestData.I32[i]) - << msg; + EXPECT_EQ(I32[s * Nx + i], currentTestData.I32[i]) << msg; if (var_i64) - EXPECT_EQ(I64[s * Nx + i], currentTestData.I64[i]) - << msg; + EXPECT_EQ(I64[s * Nx + i], currentTestData.I64[i]) << msg; if (var_u8) EXPECT_EQ(U8[s * Nx + i], currentTestData.U8[i]) << msg; if (var_u16) - EXPECT_EQ(U16[s * Nx + i], currentTestData.U16[i]) - << msg; + EXPECT_EQ(U16[s * Nx + i], currentTestData.U16[i]) << msg; if (var_u32) - EXPECT_EQ(U32[s * Nx + i], currentTestData.U32[i]) - << msg; + EXPECT_EQ(U32[s * Nx + i], currentTestData.U32[i]) << msg; if (var_u64) - EXPECT_EQ(U64[s * Nx + i], currentTestData.U64[i]) - << msg; + EXPECT_EQ(U64[s * Nx + i], currentTestData.U64[i]) << msg; if (var_r32) - EXPECT_EQ(R32[s * Nx + i], currentTestData.R32[i]) - << msg; + EXPECT_EQ(R32[s * Nx + i], currentTestData.R32[i]) << msg; if (var_r64) - EXPECT_EQ(R64[s * Nx + i], currentTestData.R64[i]) - << msg; + EXPECT_EQ(R64[s * Nx + i], currentTestData.R64[i]) << msg; if (var_cr32) - EXPECT_EQ(CR32[s * Nx + i], currentTestData.CR32[i]) - << msg; + EXPECT_EQ(CR32[s * Nx + i], currentTestData.CR32[i]) << msg; if (var_cr64) - EXPECT_EQ(CR64[s * Nx + i], currentTestData.CR64[i]) - << msg; + EXPECT_EQ(CR64[s * Nx + i], currentTestData.CR64[i]) << msg; } } } @@ -1471,33 +1359,21 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DBlockInfo) io.DefineVariable("stepsGlobalValue"); io.DefineVariable("stepsGlobalValueString"); - io.DefineVariable("ranksLocalValue", - {adios2::LocalValueDim}); - io.DefineVariable("ranksLocalValueString", - {adios2::LocalValueDim}); - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("ranksLocalValue", {adios2::LocalValueDim}); + io.DefineVariable("ranksLocalValueString", {adios2::LocalValueDim}); + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -1509,8 +1385,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DBlockInfo) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); EXPECT_EQ(bpWriter.CurrentStep(), step); @@ -1518,12 +1394,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DBlockInfo) const int32_t step32 = static_cast(step); bpWriter.Put("stepsGlobalValue", step32); - bpWriter.Put("stepsGlobalValueString", - std::to_string(step)); + bpWriter.Put("stepsGlobalValueString", std::to_string(step)); bpWriter.Put("ranksLocalValue", mpiRank); - bpWriter.Put("ranksLocalValueString", - std::to_string(mpiRank)); + bpWriter.Put("ranksLocalValueString", std::to_string(mpiRank)); bpWriter.Put("i8", currentTestData.I8.data()); bpWriter.Put("i16", currentTestData.I16.data()); @@ -1535,10 +1409,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DBlockInfo) bpWriter.Put("u64", currentTestData.U64.data()); bpWriter.Put("r32", currentTestData.R32.data()); bpWriter.Put("r64", currentTestData.R64.data()); - bpWriter.Put>("cr32", - currentTestData.CR32.data()); - bpWriter.Put>("cr64", - currentTestData.CR64.data()); + bpWriter.Put>("cr32", currentTestData.CR32.data()); + bpWriter.Put>("cr64", currentTestData.CR64.data()); bpWriter.EndStep(); } @@ -1550,14 +1422,10 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DBlockInfo) adios2::Engine bpReader = io.Open(fname, adios2::Mode::Read); - auto var_StepsGlobalValue = - io.InquireVariable("stepsGlobalValue"); - auto var_StepsGlobalValueString = - io.InquireVariable("stepsGlobalValueString"); - auto var_RanksLocalValue = - io.InquireVariable("ranksLocalValue"); - auto var_RanksLocalValueString = - io.InquireVariable("ranksLocalValueString"); + auto var_StepsGlobalValue = io.InquireVariable("stepsGlobalValue"); + auto var_StepsGlobalValueString = io.InquireVariable("stepsGlobalValueString"); + auto var_RanksLocalValue = io.InquireVariable("ranksLocalValue"); + auto var_RanksLocalValueString = io.InquireVariable("ranksLocalValueString"); auto var_i8 = io.InquireVariable("i8"); auto var_i16 = io.InquireVariable("i16"); @@ -1574,8 +1442,8 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1DBlockInfo) for (size_t s = 0; s < NSteps; ++s) { - const std::vector::Info> - i16_blocks = bpReader.BlocksInfo(var_RanksLocalValue, s); + const std::vector::Info> i16_blocks = + bpReader.BlocksInfo(var_RanksLocalValue, s); EXPECT_EQ(i16_blocks.size(), mpiSize); diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadMGARD.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadMGARD.cpp index f0fe74870d..85b96063c6 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadMGARD.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadMGARD.cpp @@ -58,21 +58,16 @@ void MGARDAccuracy1D(const std::string tolerance) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator mgardOp = - adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); + adios2::Operator mgardOp = adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); - var_r32.AddOperation(mgardOp, - {{adios2::ops::mgard::key::tolerance, tolerance}, - {adios2::ops::mgard::key::s, "inf"}}); - var_r64.AddOperation(mgardOp, - {{adios2::ops::mgard::key::tolerance, tolerance}, - {adios2::ops::mgard::key::s, "inf"}}); + var_r32.AddOperation(mgardOp, {{adios2::ops::mgard::key::tolerance, tolerance}, + {adios2::ops::mgard::key::s, "inf"}}); + var_r64.AddOperation(mgardOp, {{adios2::ops::mgard::key::tolerance, tolerance}, + {adios2::ops::mgard::key::s, "inf"}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -144,8 +139,8 @@ void MGARDAccuracy1D(const std::string tolerance) auto r64s_Max = std::max_element(r64s.begin(), r64s.end()); relativeMaxDiff = maxDiff / *r64s_Max; ASSERT_LT(relativeMaxDiff, std::stod(tolerance)); - std::cout << "Relative Max Diff " << relativeMaxDiff - << " tolerance " << tolerance << "\n"; + std::cout << "Relative Max Diff " << relativeMaxDiff << " tolerance " << tolerance + << "\n"; for (size_t i = 0; i < Nx; ++i) { @@ -166,8 +161,8 @@ void MGARDAccuracy1D(const std::string tolerance) relativeMaxDiff = maxDiff / *r32s_Max; ASSERT_LT(relativeMaxDiff, std::stod(tolerance)); - std::cout << "Relative Max Diff " << relativeMaxDiff - << " tolerance " << tolerance << "\n"; + std::cout << "Relative Max Diff " << relativeMaxDiff << " tolerance " << tolerance + << "\n"; } EXPECT_EQ(t, NSteps); @@ -219,21 +214,16 @@ void MGARDAccuracy2D(const std::string tolerance) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator mgardOp = - adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); + adios2::Operator mgardOp = adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); - var_r32.AddOperation(mgardOp, - {{adios2::ops::mgard::key::tolerance, tolerance}, - {adios2::ops::mgard::key::s, "inf"}}); - var_r64.AddOperation(mgardOp, - {{adios2::ops::mgard::key::tolerance, tolerance}, - {adios2::ops::mgard::key::s, "inf"}}); + var_r32.AddOperation(mgardOp, {{adios2::ops::mgard::key::tolerance, tolerance}, + {adios2::ops::mgard::key::s, "inf"}}); + var_r64.AddOperation(mgardOp, {{adios2::ops::mgard::key::tolerance, tolerance}, + {adios2::ops::mgard::key::s, "inf"}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -309,8 +299,8 @@ void MGARDAccuracy2D(const std::string tolerance) relativeMaxDiff = maxDiff / *r64s_Max; ASSERT_LT(relativeMaxDiff, std::stod(tolerance)); - std::cout << "Relative Max Diff " << relativeMaxDiff - << " tolerance " << tolerance << "\n"; + std::cout << "Relative Max Diff " << relativeMaxDiff << " tolerance " << tolerance + << "\n"; for (size_t i = 0; i < Nx * Ny; ++i) { @@ -332,8 +322,8 @@ void MGARDAccuracy2D(const std::string tolerance) relativeMaxDiff = maxDiff / *r32s_Max; ASSERT_LT(relativeMaxDiff, std::stod(tolerance)); - std::cout << "Relative Max Diff " << relativeMaxDiff - << " tolerance " << tolerance << "\n"; + std::cout << "Relative Max Diff " << relativeMaxDiff << " tolerance " << tolerance + << "\n"; } EXPECT_EQ(t, NSteps); @@ -386,21 +376,16 @@ void MGARDAccuracy3D(const std::string tolerance) const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator mgardOp = - adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); + adios2::Operator mgardOp = adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); - var_r32.AddOperation(mgardOp, - {{adios2::ops::mgard::key::tolerance, tolerance}, - {adios2::ops::mgard::key::s, "inf"}}); - var_r64.AddOperation(mgardOp, - {{adios2::ops::mgard::key::tolerance, tolerance}, - {adios2::ops::mgard::key::s, "inf"}}); + var_r32.AddOperation(mgardOp, {{adios2::ops::mgard::key::tolerance, tolerance}, + {adios2::ops::mgard::key::s, "inf"}}); + var_r64.AddOperation(mgardOp, {{adios2::ops::mgard::key::tolerance, tolerance}, + {adios2::ops::mgard::key::s, "inf"}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -477,8 +462,8 @@ void MGARDAccuracy3D(const std::string tolerance) relativeMaxDiff = maxDiff / *r64s_Max; ASSERT_LT(relativeMaxDiff, std::stod(tolerance)); - std::cout << "Relative Max Diff " << relativeMaxDiff - << " tolerance " << tolerance << "\n"; + std::cout << "Relative Max Diff " << relativeMaxDiff << " tolerance " << tolerance + << "\n"; for (size_t i = 0; i < Nx * Ny * Nz; ++i) { @@ -499,8 +484,8 @@ void MGARDAccuracy3D(const std::string tolerance) relativeMaxDiff = maxDiff / *r32s_Max; ASSERT_LT(relativeMaxDiff, std::stod(tolerance)); - std::cout << "Relative Max Diff " << relativeMaxDiff - << " tolerance " << tolerance << "\n"; + std::cout << "Relative Max Diff " << relativeMaxDiff << " tolerance " << tolerance + << "\n"; } EXPECT_EQ(t, NSteps); @@ -551,21 +536,16 @@ void MGARDAccuracy1DSel(const std::string tolerance) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator mgardOp = - adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); + adios2::Operator mgardOp = adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); - var_r32.AddOperation(mgardOp, - {{adios2::ops::mgard::key::tolerance, tolerance}, - {adios2::ops::mgard::key::s, "inf"}}); - var_r64.AddOperation(mgardOp, - {{adios2::ops::mgard::key::tolerance, tolerance}, - {adios2::ops::mgard::key::s, "inf"}}); + var_r32.AddOperation(mgardOp, {{adios2::ops::mgard::key::tolerance, tolerance}, + {adios2::ops::mgard::key::s, "inf"}}); + var_r64.AddOperation(mgardOp, {{adios2::ops::mgard::key::tolerance, tolerance}, + {adios2::ops::mgard::key::s, "inf"}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -627,12 +607,10 @@ void MGARDAccuracy1DSel(const std::string tolerance) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 + i]) / - *r32s_Max, + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 + i]) / *r32s_Max, std::stod(tolerance)) << msg; - ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 + i]) / - *r64s_Max, + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 + i]) / *r64s_Max, std::stod(tolerance)) << msg; } @@ -688,21 +666,16 @@ void MGARDAccuracy2DSel(const std::string tolerance) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator mgardOp = - adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); + adios2::Operator mgardOp = adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); - var_r32.AddOperation(mgardOp, - {{adios2::ops::mgard::key::tolerance, tolerance}, - {adios2::ops::mgard::key::s, "inf"}}); - var_r64.AddOperation(mgardOp, - {{adios2::ops::mgard::key::tolerance, tolerance}, - {adios2::ops::mgard::key::s, "inf"}}); + var_r32.AddOperation(mgardOp, {{adios2::ops::mgard::key::tolerance, tolerance}, + {adios2::ops::mgard::key::s, "inf"}}); + var_r64.AddOperation(mgardOp, {{adios2::ops::mgard::key::tolerance, tolerance}, + {adios2::ops::mgard::key::s, "inf"}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -766,15 +739,11 @@ void MGARDAccuracy2DSel(const std::string tolerance) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT( - std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny + i]) / - *r32s_Max, - std::stod(tolerance)) + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny + i]) / *r32s_Max, + std::stod(tolerance)) << msg; - ASSERT_LT( - std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny + i]) / - *r64s_Max, - std::stod(tolerance)) + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny + i]) / *r64s_Max, + std::stod(tolerance)) << msg; } ++t; @@ -830,21 +799,16 @@ void MGARDAccuracy3DSel(const std::string tolerance) const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator mgardOp = - adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); + adios2::Operator mgardOp = adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); - var_r32.AddOperation(mgardOp, - {{adios2::ops::mgard::key::tolerance, tolerance}, - {adios2::ops::mgard::key::s, "inf"}}); - var_r64.AddOperation(mgardOp, - {{adios2::ops::mgard::key::tolerance, tolerance}, - {adios2::ops::mgard::key::s, "inf"}}); + var_r32.AddOperation(mgardOp, {{adios2::ops::mgard::key::tolerance, tolerance}, + {adios2::ops::mgard::key::s, "inf"}}); + var_r64.AddOperation(mgardOp, {{adios2::ops::mgard::key::tolerance, tolerance}, + {adios2::ops::mgard::key::s, "inf"}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -910,15 +874,11 @@ void MGARDAccuracy3DSel(const std::string tolerance) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT( - std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny * Nz + i]) / - *r32s_Max, - std::stod(tolerance)) + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny * Nz + i]) / *r32s_Max, + std::stod(tolerance)) << msg; - ASSERT_LT( - std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny * Nz + i]) / - *r64s_Max, - std::stod(tolerance)) + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny * Nz + i]) / *r64s_Max, + std::stod(tolerance)) << msg; } @@ -952,8 +912,7 @@ TEST_P(BPWriteReadMGARD, BPWRMGARDSel2D) { MGARDAccuracy2DSel(GetParam()); } TEST_P(BPWriteReadMGARD, BPWRMGARDSel3D) { MGARDAccuracy3DSel(GetParam()); } INSTANTIATE_TEST_SUITE_P(MGARDAccuracy, BPWriteReadMGARD, - ::testing::Values("0.01", "0.001", "0.0001", - "0.00001")); + ::testing::Values("0.01", "0.001", "0.0001", "0.00001")); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadMGARDCuda.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadMGARDCuda.cpp index 34ab31a230..a93adfcbbe 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadMGARDCuda.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadMGARDCuda.cpp @@ -52,14 +52,11 @@ void MGARDAccuracy2D(const std::string tolerance) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add MGARD operations - adios2::Operator mgardOp = - adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); - var_r64.AddOperation(mgardOp, - {{adios2::ops::mgard::key::tolerance, tolerance}}); + adios2::Operator mgardOp = adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); + var_r64.AddOperation(mgardOp, {{adios2::ops::mgard::key::tolerance, tolerance}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -68,8 +65,7 @@ void MGARDAccuracy2D(const std::string tolerance) for (size_t step = 0; step < NSteps; ++step) { bpWriter.BeginStep(); - cudaMemcpy(gpu64s, r64s.data(), Nx * Ny * sizeof(double), - cudaMemcpyHostToDevice); + cudaMemcpy(gpu64s, r64s.data(), Nx * Ny * sizeof(double), cudaMemcpyHostToDevice); var_r64.SetMemorySpace(adios2::MemorySpace::GPU); bpWriter.Put("r64", gpu64s); bpWriter.EndStep(); @@ -109,8 +105,8 @@ void MGARDAccuracy2D(const std::string tolerance) cudaMalloc(&gpu64s, Nx * Ny * sizeof(double)); bpReader.Get(var_r64, gpu64s); bpReader.EndStep(); - cudaMemcpy(decompressedR64s.data(), gpu64s, - Nx * Ny * sizeof(double), cudaMemcpyDeviceToHost); + cudaMemcpy(decompressedR64s.data(), gpu64s, Nx * Ny * sizeof(double), + cudaMemcpyDeviceToHost); double maxDiff = 0; for (size_t i = 0; i < Nx * Ny; ++i) @@ -130,8 +126,8 @@ void MGARDAccuracy2D(const std::string tolerance) auto itMax = std::max_element(r64s.begin(), r64s.end()); const double relativeMaxDiff = maxDiff / *itMax; ASSERT_LT(relativeMaxDiff, std::stod(tolerance)); - std::cout << "Relative Max Diff " << relativeMaxDiff - << " tolerance " << tolerance << "\n"; + std::cout << "Relative Max Diff " << relativeMaxDiff << " tolerance " << tolerance + << "\n"; } EXPECT_EQ(t, NSteps); @@ -178,16 +174,13 @@ void MGARDAccuracySmall(const std::string tolerance) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator mgardOp = - adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); + adios2::Operator mgardOp = adios.DefineOperator("mgardCompressor", adios2::ops::LossyMGARD); - var_r32.AddOperation(mgardOp, - {{adios2::ops::mgard::key::tolerance, tolerance}, - {adios2::ops::mgard::key::s, "inf"}}); + var_r32.AddOperation(mgardOp, {{adios2::ops::mgard::key::tolerance, tolerance}, + {adios2::ops::mgard::key::s, "inf"}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -196,8 +189,7 @@ void MGARDAccuracySmall(const std::string tolerance) for (size_t step = 0; step < NSteps; ++step) { bpWriter.BeginStep(); - cudaMemcpy(gpu32s, r32s.data(), Nx * sizeof(float), - cudaMemcpyHostToDevice); + cudaMemcpy(gpu32s, r32s.data(), Nx * sizeof(float), cudaMemcpyHostToDevice); bpWriter.Put("r32", gpu32s); bpWriter.EndStep(); } @@ -235,8 +227,7 @@ void MGARDAccuracySmall(const std::string tolerance) cudaMalloc(&gpu32s, Nx * sizeof(float)); bpReader.Get(var_r32, gpu32s); bpReader.EndStep(); - cudaMemcpy(decompressedR32s.data(), gpu32s, Nx * sizeof(float), - cudaMemcpyDeviceToHost); + cudaMemcpy(decompressedR32s.data(), gpu32s, Nx * sizeof(float), cudaMemcpyDeviceToHost); double maxDiff = 0, relativeMaxDiff = 0; @@ -259,8 +250,8 @@ void MGARDAccuracySmall(const std::string tolerance) relativeMaxDiff = maxDiff / *r32s_Max; ASSERT_LT(relativeMaxDiff, std::stod(tolerance)); - std::cout << "Relative Max Diff " << relativeMaxDiff - << " tolerance " << tolerance << "\n"; + std::cout << "Relative Max Diff " << relativeMaxDiff << " tolerance " << tolerance + << "\n"; } EXPECT_EQ(t, NSteps); @@ -281,8 +272,7 @@ TEST_P(BPWriteReadMGARD, BPWRMGARDCU2D) { MGARDAccuracy2D(GetParam()); } TEST_P(BPWriteReadMGARD, BPWRMGARDCU1D) { MGARDAccuracySmall(GetParam()); } INSTANTIATE_TEST_SUITE_P(MGARDAccuracy, BPWriteReadMGARD, - ::testing::Values("0.01", "0.001", "0.0001", - "0.00001")); + ::testing::Values("0.01", "0.001", "0.0001", "0.00001")); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadMGARDPlus.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadMGARDPlus.cpp index bed949d225..3897361960 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadMGARDPlus.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadMGARDPlus.cpp @@ -58,15 +58,11 @@ void MGARDAccuracy1D(const std::string tolerance) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); - var_r32.AddOperation("MGARDPlus", - {{adios2::ops::mgard::key::tolerance, tolerance}}); - var_r64.AddOperation("MGARDPlus", - {{adios2::ops::mgard::key::tolerance, tolerance}}); + var_r32.AddOperation("MGARDPlus", {{adios2::ops::mgard::key::tolerance, tolerance}}); + var_r64.AddOperation("MGARDPlus", {{adios2::ops::mgard::key::tolerance, tolerance}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -141,8 +137,8 @@ void MGARDAccuracy1D(const std::string tolerance) const double relativeMaxDiff = maxDiff / *itMax; ASSERT_LT(relativeMaxDiff, std::stod(tolerance)); - std::cout << "Relative Max Diff " << relativeMaxDiff - << " tolerance " << tolerance << "\n"; + std::cout << "Relative Max Diff " << relativeMaxDiff << " tolerance " << tolerance + << "\n"; } EXPECT_EQ(t, NSteps); @@ -194,15 +190,11 @@ void MGARDAccuracy2D(const std::string tolerance) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); - var_r32.AddOperation("MGARDPlus", - {{adios2::ops::mgard::key::tolerance, tolerance}}); - var_r64.AddOperation("MGARDPlus", - {{adios2::ops::mgard::key::tolerance, tolerance}}); + var_r32.AddOperation("MGARDPlus", {{adios2::ops::mgard::key::tolerance, tolerance}}); + var_r64.AddOperation("MGARDPlus", {{adios2::ops::mgard::key::tolerance, tolerance}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -278,8 +270,8 @@ void MGARDAccuracy2D(const std::string tolerance) const double relativeMaxDiff = maxDiff / *itMax; ASSERT_LT(relativeMaxDiff, std::stod(tolerance)); - std::cout << "Relative Max Diff " << relativeMaxDiff - << " tolerance " << tolerance << "\n"; + std::cout << "Relative Max Diff " << relativeMaxDiff << " tolerance " << tolerance + << "\n"; } EXPECT_EQ(t, NSteps); @@ -332,15 +324,11 @@ void MGARDAccuracy3D(const std::string tolerance) const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); - var_r32.AddOperation("MGARDPlus", - {{adios2::ops::mgard::key::tolerance, tolerance}}); - var_r64.AddOperation("MGARDPlus", - {{adios2::ops::mgard::key::tolerance, tolerance}}); + var_r32.AddOperation("MGARDPlus", {{adios2::ops::mgard::key::tolerance, tolerance}}); + var_r64.AddOperation("MGARDPlus", {{adios2::ops::mgard::key::tolerance, tolerance}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -418,8 +406,8 @@ void MGARDAccuracy3D(const std::string tolerance) const double relativeMaxDiff = maxDiff / *itMax; ASSERT_LT(relativeMaxDiff, std::stod(tolerance)); - std::cout << "Relative Max Diff " << relativeMaxDiff - << " tolerance " << tolerance << "\n"; + std::cout << "Relative Max Diff " << relativeMaxDiff << " tolerance " << tolerance + << "\n"; } EXPECT_EQ(t, NSteps); @@ -470,15 +458,11 @@ void MGARDAccuracy1DSel(const std::string tolerance) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); - var_r32.AddOperation("MGARDPlus", - {{adios2::ops::mgard::key::tolerance, tolerance}}); - var_r64.AddOperation("MGARDPlus", - {{adios2::ops::mgard::key::tolerance, tolerance}}); + var_r32.AddOperation("MGARDPlus", {{adios2::ops::mgard::key::tolerance, tolerance}}); + var_r64.AddOperation("MGARDPlus", {{adios2::ops::mgard::key::tolerance, tolerance}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -541,8 +525,7 @@ void MGARDAccuracy1DSel(const std::string tolerance) // r32s[Nx / 2 + i]), // tolerance) // << msg; - ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 + i]), - std::stod(tolerance)) + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 + i]), std::stod(tolerance)) << msg; } ++t; @@ -597,15 +580,11 @@ void MGARDAccuracy2DSel(const std::string tolerance) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); - var_r32.AddOperation("MGARDPlus", - {{adios2::ops::mgard::key::tolerance, tolerance}}); - var_r64.AddOperation("MGARDPlus", - {{adios2::ops::mgard::key::tolerance, tolerance}}); + var_r32.AddOperation("MGARDPlus", {{adios2::ops::mgard::key::tolerance, tolerance}}); + var_r64.AddOperation("MGARDPlus", {{adios2::ops::mgard::key::tolerance, tolerance}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -727,15 +706,11 @@ void MGARDAccuracy3DSel(const std::string tolerance) const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); - var_r32.AddOperation("MGARDPlus", - {{adios2::ops::mgard::key::tolerance, tolerance}}); - var_r64.AddOperation("MGARDPlus", - {{adios2::ops::mgard::key::tolerance, tolerance}}); + var_r32.AddOperation("MGARDPlus", {{adios2::ops::mgard::key::tolerance, tolerance}}); + var_r64.AddOperation("MGARDPlus", {{adios2::ops::mgard::key::tolerance, tolerance}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -805,8 +780,7 @@ void MGARDAccuracy3DSel(const std::string tolerance) // * Ny * Nz + i]), // tolerance) // << msg; - double diff = - std::abs(r64s[Nx / 2 * Ny * Nz + i] - decompressedR64s[i]); + double diff = std::abs(r64s[Nx / 2 * Ny * Nz + i] - decompressedR64s[i]); if (diff > maxDiff) { @@ -840,14 +814,12 @@ void MGARDAccuracy2DSmallSel(const std::string tolerance) // Number of steps const size_t NSteps = 1; - std::vector r32s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, - 0.07, 0.08, 0.09, 0.10, 0.11, 0.12, 0.13, - 0.14, 0.15, 0.16, 0.17, 0.18, 0.19, 0.20, - 0.21, 0.22, 0.23, 0.24}; - std::vector r64s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, - 0.07, 0.08, 0.09, 0.10, 0.11, 0.12, 0.13, - 0.14, 0.15, 0.16, 0.17, 0.18, 0.19, 0.20, - 0.21, 0.22, 0.23, 0.24}; + std::vector r32s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, 0.07, 0.08, + 0.09, 0.10, 0.11, 0.12, 0.13, 0.14, 0.15, 0.16, 0.17, + 0.18, 0.19, 0.20, 0.21, 0.22, 0.23, 0.24}; + std::vector r64s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, 0.07, 0.08, + 0.09, 0.10, 0.11, 0.12, 0.13, 0.14, 0.15, 0.16, 0.17, + 0.18, 0.19, 0.20, 0.21, 0.22, 0.23, 0.24}; #if ADIOS2_USE_MPI MPI_Comm_rank(MPI_COMM_WORLD, &mpiRank); MPI_Comm_size(MPI_COMM_WORLD, &mpiSize); @@ -870,15 +842,11 @@ void MGARDAccuracy2DSmallSel(const std::string tolerance) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); - var_r32.AddOperation("MGARDPlus", - {{adios2::ops::mgard::key::tolerance, tolerance}}); - var_r64.AddOperation("MGARDPlus", - {{adios2::ops::mgard::key::tolerance, tolerance}}); + var_r32.AddOperation("MGARDPlus", {{adios2::ops::mgard::key::tolerance, tolerance}}); + var_r64.AddOperation("MGARDPlus", {{adios2::ops::mgard::key::tolerance, tolerance}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -923,8 +891,7 @@ void MGARDAccuracy2DSmallSel(const std::string tolerance) ASSERT_EQ(var_r64.Shape()[0], mpiSize * Nx); ASSERT_EQ(var_r64.Shape()[1], Ny); - const adios2::Dims start{static_cast(mpiRank) * Nx + 1, - 1}; + const adios2::Dims start{static_cast(mpiRank) * Nx + 1, 1}; const adios2::Dims count{2, 2}; const adios2::Box sel(start, count); // var_r32.SetSelection(sel); @@ -935,20 +902,16 @@ void MGARDAccuracy2DSmallSel(const std::string tolerance) bpReader.EndStep(); // ASSERT_LT(std::abs(decompressedR32s[0] - 0.06), tolerance); - ASSERT_LT(std::abs(decompressedR64s[0] - 0.06), - std::stod(tolerance)); + ASSERT_LT(std::abs(decompressedR64s[0] - 0.06), std::stod(tolerance)); // ASSERT_LT(std::abs(decompressedR32s[1] - 0.07), tolerance); - ASSERT_LT(std::abs(decompressedR64s[1] - 0.07), - std::stod(tolerance)); + ASSERT_LT(std::abs(decompressedR64s[1] - 0.07), std::stod(tolerance)); // ASSERT_LT(std::abs(decompressedR32s[2] - 0.11), tolerance); - ASSERT_LT(std::abs(decompressedR64s[2] - 0.11), - std::stod(tolerance)); + ASSERT_LT(std::abs(decompressedR64s[2] - 0.11), std::stod(tolerance)); // ASSERT_LT(std::abs(decompressedR32s[3] - 0.12), tolerance); - ASSERT_LT(std::abs(decompressedR64s[3] - 0.12), - std::stod(tolerance)); + ASSERT_LT(std::abs(decompressedR64s[3] - 0.12), std::stod(tolerance)); ++t; } @@ -972,8 +935,7 @@ TEST_P(BPWriteReadMGARDPlus, BPWRMGARD2D) { MGARDAccuracy2D(GetParam()); } TEST_P(BPWriteReadMGARDPlus, BPWRMGARD3D) { MGARDAccuracy3D(GetParam()); } INSTANTIATE_TEST_SUITE_P(MGARDAccuracy, BPWriteReadMGARDPlus, - ::testing::Values("0.01", "0.001", "0.0001", - "0.00001")); + ::testing::Values("0.01", "0.001", "0.0001", "0.00001")); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadPNG.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadPNG.cpp index bff7736718..84924f9de6 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadPNG.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadPNG.cpp @@ -83,64 +83,47 @@ void PNGAccuracy2D(const std::string compressionLevel) const adios2::Dims start{static_cast(height * mpiRank), 0}; const adios2::Dims count{height, width}; - auto var_i8 = io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - auto var_i16 = io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - auto var_i32 = io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - - auto var_u8 = io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - auto var_u16 = io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - auto var_u32 = io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); + auto var_i8 = io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + auto var_i16 = io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + auto var_i32 = io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + + auto var_u8 = io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + auto var_u16 = + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + auto var_u32 = + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); // add operations - var_i8.AddOperation("png", {{adios2::ops::png::key::color_type, - adios2::ops::png::value::color_type_GRAY}, - {adios2::ops::png::key::compression_level, - compressionLevel}}); - - var_i16.AddOperation( - "png", - {{adios2::ops::png::key::color_type, - adios2::ops::png::value::color_type_GRAY_ALPHA}, - {adios2::ops::png::key::compression_level, compressionLevel}}); - - var_i32.AddOperation( - "png", - {{adios2::ops::png::key::color_type, - adios2::ops::png::value::color_type_RGB_ALPHA}, - {adios2::ops::png::key::compression_level, compressionLevel}}); - - var_u8.AddOperation("png", {{adios2::ops::png::key::color_type, - adios2::ops::png::value::color_type_GRAY}, - {adios2::ops::png::key::compression_level, - compressionLevel}}); - - var_u16.AddOperation( - "png", - {{adios2::ops::png::key::color_type, - adios2::ops::png::value::color_type_GRAY_ALPHA}, - {adios2::ops::png::key::compression_level, compressionLevel}}); - - var_u32.AddOperation( - "png", - {{adios2::ops::png::key::color_type, - adios2::ops::png::value::color_type_RGB_ALPHA}, - {adios2::ops::png::key::compression_level, compressionLevel}}); - - var_u32.AddOperation("png", {{adios2::ops::png::key::compression_level, - compressionLevel}}); - - var_r32.AddOperation("png", {{adios2::ops::png::key::compression_level, - compressionLevel}}); + var_i8.AddOperation( + "png", {{adios2::ops::png::key::color_type, adios2::ops::png::value::color_type_GRAY}, + {adios2::ops::png::key::compression_level, compressionLevel}}); + + var_i16.AddOperation("png", {{adios2::ops::png::key::color_type, + adios2::ops::png::value::color_type_GRAY_ALPHA}, + {adios2::ops::png::key::compression_level, compressionLevel}}); + + var_i32.AddOperation("png", {{adios2::ops::png::key::color_type, + adios2::ops::png::value::color_type_RGB_ALPHA}, + {adios2::ops::png::key::compression_level, compressionLevel}}); + + var_u8.AddOperation( + "png", {{adios2::ops::png::key::color_type, adios2::ops::png::value::color_type_GRAY}, + {adios2::ops::png::key::compression_level, compressionLevel}}); + + var_u16.AddOperation("png", {{adios2::ops::png::key::color_type, + adios2::ops::png::value::color_type_GRAY_ALPHA}, + {adios2::ops::png::key::compression_level, compressionLevel}}); + + var_u32.AddOperation("png", {{adios2::ops::png::key::color_type, + adios2::ops::png::value::color_type_RGB_ALPHA}, + {adios2::ops::png::key::compression_level, compressionLevel}}); + + var_u32.AddOperation("png", {{adios2::ops::png::key::compression_level, compressionLevel}}); + + var_r32.AddOperation("png", {{adios2::ops::png::key::compression_level, compressionLevel}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -336,17 +319,13 @@ void PNGAccuracy2DSel(const std::string accuracy) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - var_r32.AddOperation( - "png", {{adios2::ops::png::key::compression_level, accuracy}}); - var_r64.AddOperation( - "png", {{adios2::ops::png::key::compression_level, accuracy}}); + var_r32.AddOperation("png", {{adios2::ops::png::key::compression_level, accuracy}}); + var_r64.AddOperation("png", {{adios2::ops::png::key::compression_level, accuracy}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -434,17 +413,16 @@ class BPWRPNG : public ::testing::TestWithParam TEST_P(BPWRPNG, BPWRPNG2D) { PNGAccuracy2D(GetParam()); } -INSTANTIATE_TEST_SUITE_P( - PNGAccuracy, BPWRPNG, - ::testing::Values(adios2::ops::png::value::compression_level_1, - adios2::ops::png::value::compression_level_2, - adios2::ops::png::value::compression_level_3, - adios2::ops::png::value::compression_level_4, - adios2::ops::png::value::compression_level_5, - adios2::ops::png::value::compression_level_6, - adios2::ops::png::value::compression_level_7, - adios2::ops::png::value::compression_level_8, - adios2::ops::png::value::compression_level_9)); +INSTANTIATE_TEST_SUITE_P(PNGAccuracy, BPWRPNG, + ::testing::Values(adios2::ops::png::value::compression_level_1, + adios2::ops::png::value::compression_level_2, + adios2::ops::png::value::compression_level_3, + adios2::ops::png::value::compression_level_4, + adios2::ops::png::value::compression_level_5, + adios2::ops::png::value::compression_level_6, + adios2::ops::png::value::compression_level_7, + adios2::ops::png::value::compression_level_8, + adios2::ops::png::value::compression_level_9)); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadSZ.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadSZ.cpp index e4714b2af3..3f95fa0d22 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadSZ.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadSZ.cpp @@ -62,19 +62,16 @@ void SZAccuracy1D(const std::string accuracy) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - adios2::Variable var_r32 = io.DefineVariable( - "r32", shape, start, count, adios2::ConstantDims); - adios2::Variable var_r64 = io.DefineVariable( - "r64", shape, start, count, adios2::ConstantDims); + adios2::Variable var_r32 = + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + adios2::Variable var_r64 = + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator szOp = - adios.DefineOperator("szCompressor", adios2::ops::LossySZ); + adios2::Operator szOp = adios.DefineOperator("szCompressor", adios2::ops::LossySZ); - var_r32.AddOperation(szOp, - {{adios2::ops::sz::key::accuracy, accuracy}}); - var_r64.AddOperation(szOp, - {{adios2::ops::sz::key::accuracy, accuracy}}); + var_r32.AddOperation(szOp, {{adios2::ops::sz::key::accuracy, accuracy}}); + var_r64.AddOperation(szOp, {{adios2::ops::sz::key::accuracy, accuracy}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -138,12 +135,8 @@ void SZAccuracy1D(const std::string accuracy) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT(std::abs(decompressedR32s[i] - r32s[i]), - std::stod(accuracy)) - << msg; - ASSERT_LT(std::abs(decompressedR64s[i] - r64s[i]), - std::stod(accuracy)) - << msg; + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[i]), std::stod(accuracy)) << msg; + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[i]), std::stod(accuracy)) << msg; } ++t; } @@ -202,19 +195,14 @@ void SZAccuracy2D(const std::string accuracy) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator szOp = - adios.DefineOperator("szCompressor", adios2::ops::LossySZ); + adios2::Operator szOp = adios.DefineOperator("szCompressor", adios2::ops::LossySZ); - var_r32.AddOperation(szOp, - {{adios2::ops::sz::key::accuracy, accuracy}}); - var_r64.AddOperation(szOp, - {{adios2::ops::sz::key::accuracy, accuracy}}); + var_r32.AddOperation(szOp, {{adios2::ops::sz::key::accuracy, accuracy}}); + var_r64.AddOperation(szOp, {{adios2::ops::sz::key::accuracy, accuracy}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -280,12 +268,8 @@ void SZAccuracy2D(const std::string accuracy) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT(std::abs(decompressedR32s[i] - r32s[i]), - std::stod(accuracy)) - << msg; - ASSERT_LT(std::abs(decompressedR64s[i] - r64s[i]), - std::stod(accuracy)) - << msg; + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[i]), std::stod(accuracy)) << msg; + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[i]), std::stod(accuracy)) << msg; } ++t; } @@ -345,19 +329,14 @@ void SZAccuracy3D(const std::string accuracy) const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator szOp = - adios.DefineOperator("szCompressor", adios2::ops::LossySZ); + adios2::Operator szOp = adios.DefineOperator("szCompressor", adios2::ops::LossySZ); - var_r32.AddOperation(szOp, - {{adios2::ops::sz::key::accuracy, accuracy}}); - var_r64.AddOperation(szOp, - {{adios2::ops::sz::key::accuracy, accuracy}}); + var_r32.AddOperation(szOp, {{adios2::ops::sz::key::accuracy, accuracy}}); + var_r64.AddOperation(szOp, {{adios2::ops::sz::key::accuracy, accuracy}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -425,12 +404,8 @@ void SZAccuracy3D(const std::string accuracy) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT(std::abs(decompressedR32s[i] - r32s[i]), - std::stod(accuracy)) - << msg; - ASSERT_LT(std::abs(decompressedR64s[i] - r64s[i]), - std::stod(accuracy)) - << msg; + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[i]), std::stod(accuracy)) << msg; + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[i]), std::stod(accuracy)) << msg; } ++t; } @@ -488,19 +463,14 @@ void SZAccuracy1DSel(const std::string accuracy) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator szOp = - adios.DefineOperator("szCompressor", adios2::ops::LossySZ); + adios2::Operator szOp = adios.DefineOperator("szCompressor", adios2::ops::LossySZ); - var_r32.AddOperation(szOp, - {{adios2::ops::sz::key::accuracy, accuracy}}); - var_r64.AddOperation(szOp, - {{adios2::ops::sz::key::accuracy, accuracy}}); + var_r32.AddOperation(szOp, {{adios2::ops::sz::key::accuracy, accuracy}}); + var_r64.AddOperation(szOp, {{adios2::ops::sz::key::accuracy, accuracy}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -564,11 +534,9 @@ void SZAccuracy1DSel(const std::string accuracy) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 + i]), - std::stod(accuracy)) + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 + i]), std::stod(accuracy)) << msg; - ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 + i]), - std::stod(accuracy)) + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 + i]), std::stod(accuracy)) << msg; } ++t; @@ -628,19 +596,14 @@ void SZAccuracy2DSel(const std::string accuracy) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator szOp = - adios.DefineOperator("szCompressor", adios2::ops::LossySZ); + adios2::Operator szOp = adios.DefineOperator("szCompressor", adios2::ops::LossySZ); - var_r32.AddOperation(szOp, - {{adios2::ops::sz::key::accuracy, accuracy}}); - var_r64.AddOperation(szOp, - {{adios2::ops::sz::key::accuracy, accuracy}}); + var_r32.AddOperation(szOp, {{adios2::ops::sz::key::accuracy, accuracy}}); + var_r64.AddOperation(szOp, {{adios2::ops::sz::key::accuracy, accuracy}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -771,19 +734,14 @@ void SZAccuracy3DSel(const std::string accuracy) const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator szOp = - adios.DefineOperator("szCompressor", adios2::ops::LossySZ); + adios2::Operator szOp = adios.DefineOperator("szCompressor", adios2::ops::LossySZ); - var_r32.AddOperation(szOp, - {{adios2::ops::sz::key::accuracy, accuracy}}); - var_r64.AddOperation(szOp, - {{adios2::ops::sz::key::accuracy, accuracy}}); + var_r32.AddOperation(szOp, {{adios2::ops::sz::key::accuracy, accuracy}}); + var_r64.AddOperation(szOp, {{adios2::ops::sz::key::accuracy, accuracy}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -851,13 +809,11 @@ void SZAccuracy3DSel(const std::string accuracy) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT( - std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny * Nz + i]), - std::stod(accuracy)) + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny * Nz + i]), + std::stod(accuracy)) << msg; - ASSERT_LT( - std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny * Nz + i]), - std::stod(accuracy)) + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny * Nz + i]), + std::stod(accuracy)) << msg; } ++t; @@ -883,14 +839,12 @@ void SZAccuracy2DSmallSel(const std::string accuracy) // Number of steps const size_t NSteps = 1; - std::vector r32s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, - 0.07, 0.08, 0.09, 0.10, 0.11, 0.12, 0.13, - 0.14, 0.15, 0.16, 0.17, 0.18, 0.19, 0.20, - 0.21, 0.22, 0.23, 0.24}; - std::vector r64s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, - 0.07, 0.08, 0.09, 0.10, 0.11, 0.12, 0.13, - 0.14, 0.15, 0.16, 0.17, 0.18, 0.19, 0.20, - 0.21, 0.22, 0.23, 0.24}; + std::vector r32s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, 0.07, 0.08, + 0.09, 0.10, 0.11, 0.12, 0.13, 0.14, 0.15, 0.16, 0.17, + 0.18, 0.19, 0.20, 0.21, 0.22, 0.23, 0.24}; + std::vector r64s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, 0.07, 0.08, + 0.09, 0.10, 0.11, 0.12, 0.13, 0.14, 0.15, 0.16, 0.17, + 0.18, 0.19, 0.20, 0.21, 0.22, 0.23, 0.24}; #if ADIOS2_USE_MPI MPI_Comm_rank(MPI_COMM_WORLD, &mpiRank); MPI_Comm_size(MPI_COMM_WORLD, &mpiSize); @@ -918,19 +872,14 @@ void SZAccuracy2DSmallSel(const std::string accuracy) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator szOp = - adios.DefineOperator("szCompressor", adios2::ops::LossySZ); + adios2::Operator szOp = adios.DefineOperator("szCompressor", adios2::ops::LossySZ); - var_r32.AddOperation(szOp, - {{adios2::ops::sz::key::accuracy, accuracy}}); - var_r64.AddOperation(szOp, - {{adios2::ops::sz::key::accuracy, accuracy}}); + var_r32.AddOperation(szOp, {{adios2::ops::sz::key::accuracy, accuracy}}); + var_r64.AddOperation(szOp, {{adios2::ops::sz::key::accuracy, accuracy}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -980,8 +929,7 @@ void SZAccuracy2DSmallSel(const std::string accuracy) ASSERT_EQ(var_r64.Shape()[0], mpiSize * Nx); ASSERT_EQ(var_r64.Shape()[1], Ny); - const adios2::Dims start{static_cast(mpiRank) * Nx + 1, - 1}; + const adios2::Dims start{static_cast(mpiRank) * Nx + 1, 1}; const adios2::Dims count{2, 2}; const adios2::Box sel(start, count); var_r32.SetSelection(sel); @@ -991,25 +939,17 @@ void SZAccuracy2DSmallSel(const std::string accuracy) bpReader.Get(var_r64, decompressedR64s); bpReader.EndStep(); - ASSERT_LT(std::abs(decompressedR32s[0] - 0.06), - std::stod(accuracy)); - ASSERT_LT(std::abs(decompressedR64s[0] - 0.06), - std::stod(accuracy)); + ASSERT_LT(std::abs(decompressedR32s[0] - 0.06), std::stod(accuracy)); + ASSERT_LT(std::abs(decompressedR64s[0] - 0.06), std::stod(accuracy)); - ASSERT_LT(std::abs(decompressedR32s[1] - 0.07), - std::stod(accuracy)); - ASSERT_LT(std::abs(decompressedR64s[1] - 0.07), - std::stod(accuracy)); + ASSERT_LT(std::abs(decompressedR32s[1] - 0.07), std::stod(accuracy)); + ASSERT_LT(std::abs(decompressedR64s[1] - 0.07), std::stod(accuracy)); - ASSERT_LT(std::abs(decompressedR32s[2] - 0.11), - std::stod(accuracy)); - ASSERT_LT(std::abs(decompressedR64s[2] - 0.11), - std::stod(accuracy)); + ASSERT_LT(std::abs(decompressedR32s[2] - 0.11), std::stod(accuracy)); + ASSERT_LT(std::abs(decompressedR64s[2] - 0.11), std::stod(accuracy)); - ASSERT_LT(std::abs(decompressedR32s[3] - 0.12), - std::stod(accuracy)); - ASSERT_LT(std::abs(decompressedR64s[3] - 0.12), - std::stod(accuracy)); + ASSERT_LT(std::abs(decompressedR32s[3] - 0.12), std::stod(accuracy)); + ASSERT_LT(std::abs(decompressedR64s[3] - 0.12), std::stod(accuracy)); ++t; } @@ -1037,8 +977,7 @@ TEST_P(BPWriteReadSZ, BPWRSZ3DSel) { SZAccuracy3DSel(GetParam()); } TEST_F(BPWriteReadSZ, BPWRSZ2DSmallSel) { SZAccuracy2DSmallSel("0.01"); } INSTANTIATE_TEST_SUITE_P(SZAccuracy, BPWriteReadSZ, - ::testing::Values("0.01", "0.001", "0.0001", - "0.00001")); + ::testing::Values("0.01", "0.001", "0.0001", "0.00001")); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadSzComplex.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadSzComplex.cpp index b40bfc195b..b0c526b379 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadSzComplex.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadSzComplex.cpp @@ -27,11 +27,9 @@ class BPEngineTest : public ::testing::Test }; template -void PrintData(const T *data, const size_t step, const Dims &start, - const Dims &count) +void PrintData(const T *data, const size_t step, const Dims &start, const Dims &count) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::cout << "Step: " << step << " Size:" << size << "\n"; size_t printsize = 128; @@ -55,8 +53,8 @@ void PrintData(const T *data, const size_t step, const Dims &start, } template -void GenData(std::vector> &data, const size_t step, - const Dims &start, const Dims &count, const Dims &shape) +void GenData(std::vector> &data, const size_t step, const Dims &start, + const Dims &count, const Dims &shape) { if (start.size() == 2) { @@ -64,20 +62,19 @@ void GenData(std::vector> &data, const size_t step, { for (size_t j = 0; j < count[1]; ++j) { - data[i * count[1] + j] = { - static_cast((i + start[1]) * shape[1] + j + start[0] + - std::stof(accuracy) * 0.01 * (T)step), - static_cast((i + start[1]) * shape[1] + j + start[0] + - std::stof(accuracy) * 0.01 * (T)step) + - 1}; + data[i * count[1] + j] = {static_cast((i + start[1]) * shape[1] + j + start[0] + + std::stof(accuracy) * 0.01 * (T)step), + static_cast((i + start[1]) * shape[1] + j + start[0] + + std::stof(accuracy) * 0.01 * (T)step) + + 1}; } } } } template -void GenData(std::vector &data, const size_t step, const Dims &start, - const Dims &count, const Dims &shape) +void GenData(std::vector &data, const size_t step, const Dims &start, const Dims &count, + const Dims &shape) { if (start.size() == 2) { @@ -85,20 +82,18 @@ void GenData(std::vector &data, const size_t step, const Dims &start, { for (size_t j = 0; j < count[1]; ++j) { - data[i * count[1] + j] = - (i + start[1]) * shape[1] + j + start[0] + - std::stof(accuracy) * 0.00001 * (T)step; + data[i * count[1] + j] = (i + start[1]) * shape[1] + j + start[0] + + std::stof(accuracy) * 0.00001 * (T)step; } } } } template -void VerifyData(const std::complex *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape, bool &compressed) +void VerifyData(const std::complex *data, size_t step, const Dims &start, const Dims &count, + const Dims &shape, bool &compressed) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::vector> tmpdata(size); GenData(tmpdata, step, start, count, shape); for (size_t i = 0; i < size; ++i) @@ -107,8 +102,7 @@ void VerifyData(const std::complex *data, size_t step, const Dims &start, std::stof(accuracy)); ASSERT_LT(std::abs((double)data[i].imag() - (double)tmpdata[i].imag()), std::stof(accuracy)); - if (data[i].real() != tmpdata[i].real() || - data[i].imag() != tmpdata[i].imag()) + if (data[i].real() != tmpdata[i].real() || data[i].imag() != tmpdata[i].imag()) { compressed = true; } @@ -116,17 +110,15 @@ void VerifyData(const std::complex *data, size_t step, const Dims &start, } template -void VerifyData(const T *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape, bool &compressed) +void VerifyData(const T *data, size_t step, const Dims &start, const Dims &count, const Dims &shape, + bool &compressed) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::vector tmpdata(size); GenData(tmpdata, step, start, count, shape); for (size_t i = 0; i < size; ++i) { - ASSERT_LT(std::abs((double)(data[i] - tmpdata[i])), - std::stof(accuracy)); + ASSERT_LT(std::abs((double)(data[i] - tmpdata[i])), std::stof(accuracy)); if (data[i] != tmpdata[i]) { compressed = true; @@ -134,11 +126,9 @@ void VerifyData(const T *data, size_t step, const Dims &start, } } -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); #if ADIOS2_USE_MPI adios2::ADIOS adios(MPI_COMM_WORLD); #else @@ -156,26 +146,20 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto bpChars = io.DefineVariable("bpChars", shape, start, count); - auto bpUChars = - io.DefineVariable("bpUChars", shape, start, count); + auto bpUChars = io.DefineVariable("bpUChars", shape, start, count); auto bpShorts = io.DefineVariable("bpShorts", shape, start, count); - auto bpUShorts = - io.DefineVariable("bpUShorts", shape, start, count); + auto bpUShorts = io.DefineVariable("bpUShorts", shape, start, count); auto bpInts = io.DefineVariable("bpInts", shape, start, count); - auto bpUInts = - io.DefineVariable("bpUInts", shape, start, count); + auto bpUInts = io.DefineVariable("bpUInts", shape, start, count); auto bpFloats = io.DefineVariable("bpFloats", shape, start, count); - adios2::Operator compressor = - adios.DefineOperator("szCompressor", adios2::ops::LossySZ); + adios2::Operator compressor = adios.DefineOperator("szCompressor", adios2::ops::LossySZ); bpFloats.AddOperation(compressor, {{"accuracy", accuracy}}); - auto bpDoubles = - io.DefineVariable("bpDoubles", shape, start, count); + auto bpDoubles = io.DefineVariable("bpDoubles", shape, start, count); bpDoubles.AddOperation(compressor, {{"accuracy", accuracy}}); - auto bpComplexes = io.DefineVariable>( - "bpComplexes", shape, start, count); + auto bpComplexes = io.DefineVariable>("bpComplexes", shape, start, count); bpComplexes.AddOperation(compressor, {{"accuracy", accuracy}}); - auto bpDComplexes = io.DefineVariable>( - "bpDComplexes", shape, start, count); + auto bpDComplexes = + io.DefineVariable>("bpDComplexes", shape, start, count); bpDComplexes.AddOperation(compressor, {{"accuracy", accuracy}}); io.DefineAttribute("AttInt", 110); adios2::Engine writerEngine = io.Open(fileName, adios2::Mode::Write); @@ -207,8 +191,7 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, writerEngine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps) { #if ADIOS2_USE_MPI adios2::ADIOS adios(MPI_COMM_WORLD); @@ -218,8 +201,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, adios2::IO io = adios.DeclareIO(ioName); adios2::Engine readerEngine = io.Open(fileName, adios2::Mode::Read); - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -254,21 +236,16 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, GenData(myDoubles, currentStep, start, count, shape); GenData(myComplexes, currentStep, start, count, shape); GenData(myDComplexes, currentStep, start, count, shape); - adios2::Variable bpChars = - io.InquireVariable("bpChars"); + adios2::Variable bpChars = io.InquireVariable("bpChars"); adios2::Variable bpUChars = io.InquireVariable("bpUChars"); - adios2::Variable bpShorts = - io.InquireVariable("bpShorts"); + adios2::Variable bpShorts = io.InquireVariable("bpShorts"); adios2::Variable bpUShorts = io.InquireVariable("bpUShorts"); adios2::Variable bpInts = io.InquireVariable("bpInts"); - adios2::Variable bpUInts = - io.InquireVariable("bpUInts"); - adios2::Variable bpFloats = - io.InquireVariable("bpFloats"); - adios2::Variable bpDoubles = - io.InquireVariable("bpDoubles"); + adios2::Variable bpUInts = io.InquireVariable("bpUInts"); + adios2::Variable bpFloats = io.InquireVariable("bpFloats"); + adios2::Variable bpDoubles = io.InquireVariable("bpDoubles"); adios2::Variable> bpComplexes = io.InquireVariable>("bpComplexes"); adios2::Variable> bpDComplexes = @@ -294,31 +271,19 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, readerEngine.Get(bpUInts, myUInts.data(), adios2::Mode::Sync); readerEngine.Get(bpFloats, myFloats.data(), adios2::Mode::Sync); readerEngine.Get(bpDoubles, myDoubles.data(), adios2::Mode::Sync); - readerEngine.Get(bpComplexes, myComplexes.data(), - adios2::Mode::Sync); - readerEngine.Get(bpDComplexes, myDComplexes.data(), - adios2::Mode::Sync); + readerEngine.Get(bpComplexes, myComplexes.data(), adios2::Mode::Sync); + readerEngine.Get(bpDComplexes, myDComplexes.data(), adios2::Mode::Sync); - VerifyData(myChars.data(), currentStep, start, count, shape, - otherCompressed); - VerifyData(myUChars.data(), currentStep, start, count, shape, - otherCompressed); - VerifyData(myShorts.data(), currentStep, start, count, shape, - otherCompressed); - VerifyData(myUShorts.data(), currentStep, start, count, shape, - otherCompressed); - VerifyData(myInts.data(), currentStep, start, count, shape, - otherCompressed); - VerifyData(myUInts.data(), currentStep, start, count, shape, - otherCompressed); - VerifyData(myFloats.data(), currentStep, start, count, shape, - floatCompressed); - VerifyData(myDoubles.data(), currentStep, start, count, shape, - doubleCompressed); - VerifyData(myComplexes.data(), currentStep, start, count, shape, - complexCompressed); - VerifyData(myDComplexes.data(), currentStep, start, count, shape, - dcomplexCompressed); + VerifyData(myChars.data(), currentStep, start, count, shape, otherCompressed); + VerifyData(myUChars.data(), currentStep, start, count, shape, otherCompressed); + VerifyData(myShorts.data(), currentStep, start, count, shape, otherCompressed); + VerifyData(myUShorts.data(), currentStep, start, count, shape, otherCompressed); + VerifyData(myInts.data(), currentStep, start, count, shape, otherCompressed); + VerifyData(myUInts.data(), currentStep, start, count, shape, otherCompressed); + VerifyData(myFloats.data(), currentStep, start, count, shape, floatCompressed); + VerifyData(myDoubles.data(), currentStep, start, count, shape, doubleCompressed); + VerifyData(myComplexes.data(), currentStep, start, count, shape, complexCompressed); + VerifyData(myDComplexes.data(), currentStep, start, count, shape, dcomplexCompressed); readerEngine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadZfp.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadZfp.cpp index 005fe14e52..12e2208306 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadZfp.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadZfp.cpp @@ -58,18 +58,15 @@ void ZFPRate1D(const std::string rate) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator ZFPOp = - adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); + adios2::Operator ZFPOp = adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); var_r32.AddOperation(ZFPOp, {{adios2::ops::zfp::key::rate, rate}}); - var_r64.AddOperation(ZFPOp, {{adios2::ops::zfp::key::rate, - std::to_string(2 * std::stod(rate))}}); + var_r64.AddOperation(ZFPOp, + {{adios2::ops::zfp::key::rate, std::to_string(2 * std::stod(rate))}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -193,14 +190,11 @@ void ZFPRate2D(const std::string rate) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator szOp = - adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); + adios2::Operator szOp = adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); var_r32.AddOperation(szOp, {{"rate", rate}}); var_r64.AddOperation(szOp, {{"rate", rate}}); @@ -327,14 +321,11 @@ void ZFPRate3D(const std::string rate) const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator szOp = - adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); + adios2::Operator szOp = adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); var_r32.AddOperation(szOp, {{adios2::ops::zfp::key::rate, rate}}); var_r64.AddOperation(szOp, {{adios2::ops::zfp::key::rate, rate}}); @@ -461,18 +452,15 @@ void ZFPRate1DSel(const std::string rate) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator ZFPOp = - adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); + adios2::Operator ZFPOp = adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); var_r32.AddOperation(ZFPOp, {{adios2::ops::zfp::key::rate, rate}}); - var_r64.AddOperation(ZFPOp, {{adios2::ops::zfp::key::rate, - std::to_string(2 * std::stod(rate))}}); + var_r64.AddOperation(ZFPOp, + {{adios2::ops::zfp::key::rate, std::to_string(2 * std::stod(rate))}}); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -515,11 +503,9 @@ void ZFPRate1DSel(const std::string rate) EXPECT_TRUE(var_r64); ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_r64.Steps(), NSteps); - ASSERT_EQ(var_r64.Shape()[0], - static_cast(mpiSize) * Nx); + ASSERT_EQ(var_r64.Shape()[0], static_cast(mpiSize) * Nx); - const adios2::Dims start{static_cast(mpiRank) * Nx + - Nx / 2}; + const adios2::Dims start{static_cast(mpiRank) * Nx + Nx / 2}; const adios2::Dims count{Nx / 2}; const adios2::Box sel(start, count); var_r32.SetSelection(sel); @@ -538,12 +524,8 @@ void ZFPRate1DSel(const std::string rate) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 + i]), - 1E-4) - << msg; - ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 + i]), - 1E-4) - << msg; + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 + i]), 1E-4) << msg; + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 + i]), 1E-4) << msg; } ++t; } @@ -597,14 +579,11 @@ void ZFPRate2DSel(const std::string rate) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator szOp = - adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); + adios2::Operator szOp = adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); var_r32.AddOperation(szOp, {{"rate", rate}}); var_r64.AddOperation(szOp, {{"rate", rate}}); @@ -669,12 +648,8 @@ void ZFPRate2DSel(const std::string rate) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny + i]), - 1E-4) - << msg; - ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny + i]), - 1E-4) - << msg; + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny + i]), 1E-4) << msg; + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny + i]), 1E-4) << msg; } ++t; } @@ -729,14 +704,11 @@ void ZFPRate3DSel(const std::string rate) const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator szOp = - adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); + adios2::Operator szOp = adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); var_r32.AddOperation(szOp, {{adios2::ops::zfp::key::rate, rate}}); var_r64.AddOperation(szOp, {{adios2::ops::zfp::key::rate, rate}}); @@ -786,8 +758,7 @@ void ZFPRate3DSel(const std::string rate) ASSERT_EQ(var_r64.Shape()[1], Ny); ASSERT_EQ(var_r64.Shape()[2], Nz); - const adios2::Dims start{ - static_cast(mpiRank) * Nx + Nx / 2, 0, 0}; + const adios2::Dims start{static_cast(mpiRank) * Nx + Nx / 2, 0, 0}; const adios2::Dims count{Nx / 2, Ny, Nz}; const adios2::Box sel(start, count); var_r32.SetSelection(sel); @@ -803,14 +774,8 @@ void ZFPRate3DSel(const std::string rate) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT( - std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny * Nz + i]), - 1E-4) - << msg; - ASSERT_LT( - std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny * Nz + i]), - 1E-4) - << msg; + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny * Nz + i]), 1E-4) << msg; + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny * Nz + i]), 1E-4) << msg; } ++t; } @@ -835,14 +800,12 @@ void ZFPRate2DSmallSel(const std::string rate) // Number of steps const size_t NSteps = 1; - std::vector r32s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, - 0.07, 0.08, 0.09, 0.10, 0.11, 0.12, 0.13, - 0.14, 0.15, 0.16, 0.17, 0.18, 0.19, 0.20, - 0.21, 0.22, 0.23, 0.24}; - std::vector r64s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, - 0.07, 0.08, 0.09, 0.10, 0.11, 0.12, 0.13, - 0.14, 0.15, 0.16, 0.17, 0.18, 0.19, 0.20, - 0.21, 0.22, 0.23, 0.24}; + std::vector r32s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, 0.07, 0.08, + 0.09, 0.10, 0.11, 0.12, 0.13, 0.14, 0.15, 0.16, 0.17, + 0.18, 0.19, 0.20, 0.21, 0.22, 0.23, 0.24}; + std::vector r64s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, 0.07, 0.08, + 0.09, 0.10, 0.11, 0.12, 0.13, 0.14, 0.15, 0.16, 0.17, + 0.18, 0.19, 0.20, 0.21, 0.22, 0.23, 0.24}; #if ADIOS2_USE_MPI MPI_Comm_rank(MPI_COMM_WORLD, &mpiRank); MPI_Comm_size(MPI_COMM_WORLD, &mpiSize); @@ -865,14 +828,11 @@ void ZFPRate2DSmallSel(const std::string rate) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator szOp = - adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); + adios2::Operator szOp = adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); szOp.SetParameter("backend", "serial"); var_r32.AddOperation(szOp, {{adios2::ops::zfp::key::rate, rate}}); @@ -921,8 +881,7 @@ void ZFPRate2DSmallSel(const std::string rate) ASSERT_EQ(var_r64.Shape()[0], mpiSize * Nx); ASSERT_EQ(var_r64.Shape()[1], Ny); - const adios2::Dims start{static_cast(mpiRank) * Nx + 1, - 1}; + const adios2::Dims start{static_cast(mpiRank) * Nx + 1, 1}; const adios2::Dims count{2, 2}; const adios2::Box sel(start, count); var_r32.SetSelection(sel); diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadZfpComplex.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadZfpComplex.cpp index b4d5166de6..0494971fae 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadZfpComplex.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadZfpComplex.cpp @@ -27,11 +27,9 @@ class BPEngineTest : public ::testing::Test }; template -void PrintData(const T *data, const size_t step, const Dims &start, - const Dims &count) +void PrintData(const T *data, const size_t step, const Dims &start, const Dims &count) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::cout << "Step: " << step << " Size:" << size << "\n"; size_t printsize = 128; @@ -55,8 +53,8 @@ void PrintData(const T *data, const size_t step, const Dims &start, } template -void GenData(std::vector> &data, const size_t step, - const Dims &start, const Dims &count, const Dims &shape) +void GenData(std::vector> &data, const size_t step, const Dims &start, + const Dims &count, const Dims &shape) { if (start.size() == 2) { @@ -64,17 +62,16 @@ void GenData(std::vector> &data, const size_t step, { for (size_t j = 0; j < count[1]; ++j) { - data[i * count[1] + j] = - (i + start[1]) * shape[1] + j + start[0] + - std::stof(accuracy) * 0.00001 * (T)step; + data[i * count[1] + j] = (i + start[1]) * shape[1] + j + start[0] + + std::stof(accuracy) * 0.00001 * (T)step; } } } } template -void GenData(std::vector &data, const size_t step, const Dims &start, - const Dims &count, const Dims &shape) +void GenData(std::vector &data, const size_t step, const Dims &start, const Dims &count, + const Dims &shape) { if (start.size() == 2) { @@ -82,32 +79,25 @@ void GenData(std::vector &data, const size_t step, const Dims &start, { for (size_t j = 0; j < count[1]; ++j) { - data[i * count[1] + j] = - (i + start[1]) * shape[1] + j + start[0] + - std::stof(accuracy) * 0.00001 * (T)step; + data[i * count[1] + j] = (i + start[1]) * shape[1] + j + start[0] + + std::stof(accuracy) * 0.00001 * (T)step; } } } } template -void VerifyData(const std::complex *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape, bool &compressed) +void VerifyData(const std::complex *data, size_t step, const Dims &start, const Dims &count, + const Dims &shape, bool &compressed) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::vector> tmpdata(size); GenData(tmpdata, step, start, count, shape); for (size_t i = 0; i < size; ++i) { - ASSERT_EQ(std::abs(data[i].real() - tmpdata[i].real()) < - std::stof(accuracy), - true); - ASSERT_EQ(std::abs(data[i].imag() - tmpdata[i].imag()) < - std::stof(accuracy), - true); - if (data[i].real() != tmpdata[i].real() || - data[i].imag() != tmpdata[i].imag()) + ASSERT_EQ(std::abs(data[i].real() - tmpdata[i].real()) < std::stof(accuracy), true); + ASSERT_EQ(std::abs(data[i].imag() - tmpdata[i].imag()) < std::stof(accuracy), true); + if (data[i].real() != tmpdata[i].real() || data[i].imag() != tmpdata[i].imag()) { compressed = true; } @@ -115,18 +105,15 @@ void VerifyData(const std::complex *data, size_t step, const Dims &start, } template -void VerifyData(const T *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape, bool &compressed) +void VerifyData(const T *data, size_t step, const Dims &start, const Dims &count, const Dims &shape, + bool &compressed) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::vector tmpdata(size); GenData(tmpdata, step, start, count, shape); for (size_t i = 0; i < size; ++i) { - ASSERT_EQ(std::abs((double)(data[i] - tmpdata[i])) < - std::stof(accuracy), - true); + ASSERT_EQ(std::abs((double)(data[i] - tmpdata[i])) < std::stof(accuracy), true); if (data[i] != tmpdata[i]) { compressed = true; @@ -134,11 +121,9 @@ void VerifyData(const T *data, size_t step, const Dims &start, } } -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); #if ADIOS2_USE_MPI adios2::ADIOS adios(MPI_COMM_WORLD); #else @@ -156,26 +141,20 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto bpChars = io.DefineVariable("bpChars", shape, start, count); - auto bpUChars = - io.DefineVariable("bpUChars", shape, start, count); + auto bpUChars = io.DefineVariable("bpUChars", shape, start, count); auto bpShorts = io.DefineVariable("bpShorts", shape, start, count); - auto bpUShorts = - io.DefineVariable("bpUShorts", shape, start, count); + auto bpUShorts = io.DefineVariable("bpUShorts", shape, start, count); auto bpInts = io.DefineVariable("bpInts", shape, start, count); - auto bpUInts = - io.DefineVariable("bpUInts", shape, start, count); + auto bpUInts = io.DefineVariable("bpUInts", shape, start, count); auto bpFloats = io.DefineVariable("bpFloats", shape, start, count); - adios2::Operator zfpOp = - adios.DefineOperator("zfpCompressor", adios2::ops::LossyZFP); + adios2::Operator zfpOp = adios.DefineOperator("zfpCompressor", adios2::ops::LossyZFP); bpFloats.AddOperation(zfpOp, {{"accuracy", accuracy}}); - auto bpDoubles = - io.DefineVariable("bpDoubles", shape, start, count); + auto bpDoubles = io.DefineVariable("bpDoubles", shape, start, count); bpDoubles.AddOperation(zfpOp, {{"accuracy", accuracy}}); - auto bpComplexes = io.DefineVariable>( - "bpComplexes", shape, start, count); + auto bpComplexes = io.DefineVariable>("bpComplexes", shape, start, count); bpComplexes.AddOperation(zfpOp, {{"accuracy", accuracy}}); - auto bpDComplexes = io.DefineVariable>( - "bpDComplexes", shape, start, count); + auto bpDComplexes = + io.DefineVariable>("bpDComplexes", shape, start, count); bpDComplexes.AddOperation(zfpOp, {{"accuracy", accuracy}}); io.DefineAttribute("AttInt", 110); adios2::Engine writerEngine = io.Open(fileName, adios2::Mode::Write); @@ -207,8 +186,7 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, writerEngine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps) { #if ADIOS2_USE_MPI adios2::ADIOS adios(MPI_COMM_WORLD); @@ -218,8 +196,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, adios2::IO io = adios.DeclareIO(ioName); adios2::Engine readerEngine = io.Open(fileName, adios2::Mode::Read); - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -254,21 +231,16 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, GenData(myDoubles, currentStep, start, count, shape); GenData(myComplexes, currentStep, start, count, shape); GenData(myDComplexes, currentStep, start, count, shape); - adios2::Variable bpChars = - io.InquireVariable("bpChars"); + adios2::Variable bpChars = io.InquireVariable("bpChars"); adios2::Variable bpUChars = io.InquireVariable("bpUChars"); - adios2::Variable bpShorts = - io.InquireVariable("bpShorts"); + adios2::Variable bpShorts = io.InquireVariable("bpShorts"); adios2::Variable bpUShorts = io.InquireVariable("bpUShorts"); adios2::Variable bpInts = io.InquireVariable("bpInts"); - adios2::Variable bpUInts = - io.InquireVariable("bpUInts"); - adios2::Variable bpFloats = - io.InquireVariable("bpFloats"); - adios2::Variable bpDoubles = - io.InquireVariable("bpDoubles"); + adios2::Variable bpUInts = io.InquireVariable("bpUInts"); + adios2::Variable bpFloats = io.InquireVariable("bpFloats"); + adios2::Variable bpDoubles = io.InquireVariable("bpDoubles"); adios2::Variable> bpComplexes = io.InquireVariable>("bpComplexes"); adios2::Variable> bpDComplexes = @@ -294,31 +266,19 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, readerEngine.Get(bpUInts, myUInts.data(), adios2::Mode::Sync); readerEngine.Get(bpFloats, myFloats.data(), adios2::Mode::Sync); readerEngine.Get(bpDoubles, myDoubles.data(), adios2::Mode::Sync); - readerEngine.Get(bpComplexes, myComplexes.data(), - adios2::Mode::Sync); - readerEngine.Get(bpDComplexes, myDComplexes.data(), - adios2::Mode::Sync); + readerEngine.Get(bpComplexes, myComplexes.data(), adios2::Mode::Sync); + readerEngine.Get(bpDComplexes, myDComplexes.data(), adios2::Mode::Sync); - VerifyData(myChars.data(), currentStep, start, count, shape, - otherCompressed); - VerifyData(myUChars.data(), currentStep, start, count, shape, - otherCompressed); - VerifyData(myShorts.data(), currentStep, start, count, shape, - otherCompressed); - VerifyData(myUShorts.data(), currentStep, start, count, shape, - otherCompressed); - VerifyData(myInts.data(), currentStep, start, count, shape, - otherCompressed); - VerifyData(myUInts.data(), currentStep, start, count, shape, - otherCompressed); - VerifyData(myFloats.data(), currentStep, start, count, shape, - floatCompressed); - VerifyData(myDoubles.data(), currentStep, start, count, shape, - doubleCompressed); - VerifyData(myComplexes.data(), currentStep, start, count, shape, - complexCompressed); - VerifyData(myDComplexes.data(), currentStep, start, count, shape, - dcomplexCompressed); + VerifyData(myChars.data(), currentStep, start, count, shape, otherCompressed); + VerifyData(myUChars.data(), currentStep, start, count, shape, otherCompressed); + VerifyData(myShorts.data(), currentStep, start, count, shape, otherCompressed); + VerifyData(myUShorts.data(), currentStep, start, count, shape, otherCompressed); + VerifyData(myInts.data(), currentStep, start, count, shape, otherCompressed); + VerifyData(myUInts.data(), currentStep, start, count, shape, otherCompressed); + VerifyData(myFloats.data(), currentStep, start, count, shape, floatCompressed); + VerifyData(myDoubles.data(), currentStep, start, count, shape, doubleCompressed); + VerifyData(myComplexes.data(), currentStep, start, count, shape, complexCompressed); + VerifyData(myDComplexes.data(), currentStep, start, count, shape, dcomplexCompressed); readerEngine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadZfpConfig.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadZfpConfig.cpp index 64ba6e1f9d..7379963ea6 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadZfpConfig.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadZfpConfig.cpp @@ -45,12 +45,10 @@ void ZfpRate1D(const std::string configFile) #endif #if ADIOS2_USE_MPI - adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + - adios2::PathSeparator + configFile, + adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + adios2::PathSeparator + configFile, MPI_COMM_WORLD); #else - adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + - adios2::PathSeparator + configFile); + adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + adios2::PathSeparator + configFile); #endif { adios2::IO io = adios.DeclareIO("TestIO"); @@ -59,10 +57,8 @@ void ZfpRate1D(const std::string configFile) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); (void)var_r32; (void)var_r64; @@ -164,12 +160,10 @@ void ZfpRate2D(const std::string configFile) #endif #if ADIOS2_USE_MPI - adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + - adios2::PathSeparator + configFile, + adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + adios2::PathSeparator + configFile, MPI_COMM_WORLD); #else - adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + - adios2::PathSeparator + configFile); + adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + adios2::PathSeparator + configFile); #endif { adios2::IO io = adios.DeclareIO("TestIO"); @@ -178,10 +172,8 @@ void ZfpRate2D(const std::string configFile) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); (void)var_r32; (void)var_r64; @@ -283,12 +275,10 @@ void ZfpRate3D(const std::string configFile) #endif #if ADIOS2_USE_MPI - adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + - adios2::PathSeparator + configFile, + adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + adios2::PathSeparator + configFile, MPI_COMM_WORLD); #else - adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + - adios2::PathSeparator + configFile); + adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + adios2::PathSeparator + configFile); #endif { adios2::IO io = adios.DeclareIO("TestIO"); @@ -297,10 +287,8 @@ void ZfpRate3D(const std::string configFile) const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); (void)var_r32; (void)var_r64; @@ -402,12 +390,10 @@ void ZfpRate1DSel(const std::string configFile) #endif #if ADIOS2_USE_MPI - adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + - adios2::PathSeparator + configFile, + adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + adios2::PathSeparator + configFile, MPI_COMM_WORLD); #else - adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + - adios2::PathSeparator + configFile); + adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + adios2::PathSeparator + configFile); #endif { adios2::IO io = adios.DeclareIO("TestIO"); @@ -416,10 +402,8 @@ void ZfpRate1DSel(const std::string configFile) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); (void)var_r32; (void)var_r64; @@ -461,11 +445,9 @@ void ZfpRate1DSel(const std::string configFile) EXPECT_TRUE(var_r64); ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_r64.Steps(), NSteps); - ASSERT_EQ(var_r64.Shape()[0], - static_cast(mpiSize) * Nx); + ASSERT_EQ(var_r64.Shape()[0], static_cast(mpiSize) * Nx); - const adios2::Dims start{static_cast(mpiRank) * Nx + - Nx / 2}; + const adios2::Dims start{static_cast(mpiRank) * Nx + Nx / 2}; const adios2::Dims count{Nx / 2}; const adios2::Box sel(start, count); var_r32.SetSelection(sel); @@ -481,12 +463,8 @@ void ZfpRate1DSel(const std::string configFile) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 + i]), - 1E-4) - << msg; - ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 + i]), - 1E-4) - << msg; + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 + i]), 1E-4) << msg; + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 + i]), 1E-4) << msg; } ++t; } @@ -527,12 +505,10 @@ void ZfpRate2DSel(const std::string configFile) #endif #if ADIOS2_USE_MPI - adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + - adios2::PathSeparator + configFile, + adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + adios2::PathSeparator + configFile, MPI_COMM_WORLD); #else - adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + - adios2::PathSeparator + configFile); + adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + adios2::PathSeparator + configFile); #endif { adios2::IO io = adios.DeclareIO("TestIO"); @@ -541,10 +517,8 @@ void ZfpRate2DSel(const std::string configFile) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); (void)var_r32; (void)var_r64; @@ -603,12 +577,8 @@ void ZfpRate2DSel(const std::string configFile) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny + i]), - 1E-4) - << msg; - ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny + i]), - 1E-4) - << msg; + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny + i]), 1E-4) << msg; + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny + i]), 1E-4) << msg; } ++t; } @@ -650,12 +620,10 @@ void ZfpRate3DSel(const std::string configFile) #endif #if ADIOS2_USE_MPI - adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + - adios2::PathSeparator + configFile, + adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + adios2::PathSeparator + configFile, MPI_COMM_WORLD); #else - adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + - adios2::PathSeparator + configFile); + adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + adios2::PathSeparator + configFile); #endif { adios2::IO io = adios.DeclareIO("TestIO"); @@ -664,10 +632,8 @@ void ZfpRate3DSel(const std::string configFile) const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); (void)var_r32; (void)var_r64; @@ -712,8 +678,7 @@ void ZfpRate3DSel(const std::string configFile) ASSERT_EQ(var_r64.Shape()[1], Ny); ASSERT_EQ(var_r64.Shape()[2], Nz); - const adios2::Dims start{ - static_cast(mpiRank) * Nx + Nx / 2, 0, 0}; + const adios2::Dims start{static_cast(mpiRank) * Nx + Nx / 2, 0, 0}; const adios2::Dims count{Nx / 2, Ny, Nz}; const adios2::Box sel(start, count); var_r32.SetSelection(sel); @@ -729,14 +694,8 @@ void ZfpRate3DSel(const std::string configFile) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT( - std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny * Nz + i]), - 1E-4) - << msg; - ASSERT_LT( - std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny * Nz + i]), - 1E-4) - << msg; + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny * Nz + i]), 1E-4) << msg; + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny * Nz + i]), 1E-4) << msg; } ++t; } @@ -764,26 +723,22 @@ void ZfpRate2DSmallSel(const std::string configFile) // Number of steps const size_t NSteps = 1; - std::vector r32s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, - 0.07, 0.08, 0.09, 0.10, 0.11, 0.12, 0.13, - 0.14, 0.15, 0.16, 0.17, 0.18, 0.19, 0.20, - 0.21, 0.22, 0.23, 0.24}; - std::vector r64s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, - 0.07, 0.08, 0.09, 0.10, 0.11, 0.12, 0.13, - 0.14, 0.15, 0.16, 0.17, 0.18, 0.19, 0.20, - 0.21, 0.22, 0.23, 0.24}; + std::vector r32s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, 0.07, 0.08, + 0.09, 0.10, 0.11, 0.12, 0.13, 0.14, 0.15, 0.16, 0.17, + 0.18, 0.19, 0.20, 0.21, 0.22, 0.23, 0.24}; + std::vector r64s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, 0.07, 0.08, + 0.09, 0.10, 0.11, 0.12, 0.13, 0.14, 0.15, 0.16, 0.17, + 0.18, 0.19, 0.20, 0.21, 0.22, 0.23, 0.24}; #if ADIOS2_USE_MPI MPI_Comm_rank(MPI_COMM_WORLD, &mpiRank); MPI_Comm_size(MPI_COMM_WORLD, &mpiSize); #endif #if ADIOS2_USE_MPI - adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + - adios2::PathSeparator + configFile, + adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + adios2::PathSeparator + configFile, MPI_COMM_WORLD); #else - adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + - adios2::PathSeparator + configFile); + adios2::ADIOS adios(std::string(mystr(XML_CONFIG_DIR)) + adios2::PathSeparator + configFile); #endif { adios2::IO io = adios.DeclareIO("TestIO"); @@ -792,10 +747,8 @@ void ZfpRate2DSmallSel(const std::string configFile) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); (void)var_r32; (void)var_r64; @@ -838,8 +791,7 @@ void ZfpRate2DSmallSel(const std::string configFile) ASSERT_EQ(var_r64.Shape()[0], mpiSize * Nx); ASSERT_EQ(var_r64.Shape()[1], Ny); - const adios2::Dims start{static_cast(mpiRank) * Nx + 1, - 1}; + const adios2::Dims start{static_cast(mpiRank) * Nx + 1, 1}; const adios2::Dims count{2, 2}; const adios2::Box sel(start, count); var_r32.SetSelection(sel); @@ -882,30 +834,17 @@ class BPWriteReadZfpConfig : public ::testing::TestWithParam TEST_P(BPWriteReadZfpConfig, ADIOS2BPWriteReadZfp1D) { ZfpRate1D(GetParam()); } TEST_P(BPWriteReadZfpConfig, ADIOS2BPWriteReadZfp2D) { ZfpRate2D(GetParam()); } TEST_P(BPWriteReadZfpConfig, ADIOS2BPWriteReadZfp3D) { ZfpRate3D(GetParam()); } -TEST_P(BPWriteReadZfpConfig, ADIOS2BPWriteReadZfp1DSel) -{ - ZfpRate1DSel(GetParam()); -} -TEST_P(BPWriteReadZfpConfig, ADIOS2BPWriteReadZfp2DSel) -{ - ZfpRate2DSel(GetParam()); -} -TEST_P(BPWriteReadZfpConfig, ADIOS2BPWriteReadZfp3DSel) -{ - ZfpRate3DSel(GetParam()); -} -TEST_P(BPWriteReadZfpConfig, ADIOS2BPWriteReadZfp2DSmallSel) -{ - ZfpRate2DSmallSel(GetParam()); -} - -INSTANTIATE_TEST_SUITE_P( - ZfpConfigFile, BPWriteReadZfpConfig, - ::testing::Values("configZfp_rate8.xml", "configZfp_rate8Simple.xml", - "configZfp_rate9.xml", "configZfp_rate9Simple.xml", - "configZfp_rate10.xml", "configZfp_rate10Simple.xml", - "configZfp_rate8.yaml", "configZfp_rate9.yaml", - "configZfp_rate10.yaml")); +TEST_P(BPWriteReadZfpConfig, ADIOS2BPWriteReadZfp1DSel) { ZfpRate1DSel(GetParam()); } +TEST_P(BPWriteReadZfpConfig, ADIOS2BPWriteReadZfp2DSel) { ZfpRate2DSel(GetParam()); } +TEST_P(BPWriteReadZfpConfig, ADIOS2BPWriteReadZfp3DSel) { ZfpRate3DSel(GetParam()); } +TEST_P(BPWriteReadZfpConfig, ADIOS2BPWriteReadZfp2DSmallSel) { ZfpRate2DSmallSel(GetParam()); } + +INSTANTIATE_TEST_SUITE_P(ZfpConfigFile, BPWriteReadZfpConfig, + ::testing::Values("configZfp_rate8.xml", "configZfp_rate8Simple.xml", + "configZfp_rate9.xml", "configZfp_rate9Simple.xml", + "configZfp_rate10.xml", "configZfp_rate10Simple.xml", + "configZfp_rate8.yaml", "configZfp_rate9.yaml", + "configZfp_rate10.yaml")); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadZfpCuda.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadZfpCuda.cpp index 17bef27932..299fa10f25 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadZfpCuda.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadZfpCuda.cpp @@ -50,8 +50,8 @@ void ZFPRateCUDA(const std::string rate) float *gpuSimData = nullptr; cudaMalloc(&gpuSimData, Nx * sizeof(float)); - cudaMemcpy(gpuSimData, ((float *)&r32s[0] + (Nx * mpiRank)), - Nx * sizeof(float), cudaMemcpyHostToDevice); + cudaMemcpy(gpuSimData, ((float *)&r32s[0] + (Nx * mpiRank)), Nx * sizeof(float), + cudaMemcpyHostToDevice); { adios2::IO io = adios.DeclareIO("TestIO"); @@ -68,8 +68,7 @@ void ZFPRateCUDA(const std::string rate) auto var_r32 = io.DefineVariable("r32", shape, start, count); // add operations - adios2::Operator ZFPOp = - adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); + adios2::Operator ZFPOp = adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); var_r32.AddOperation(ZFPOp, {{adios2::ops::zfp::key::rate, rate}}); @@ -122,14 +121,13 @@ void ZFPRateCUDA(const std::string rate) // Remove INCREMENT from each element std::transform(r32o.begin(), r32o.end(), r32o.begin(), - std::bind(std::minus(), std::placeholders::_1, - INCREMENT)); + std::bind(std::minus(), std::placeholders::_1, INCREMENT)); for (size_t i = 0; i < NxTotal; i++) { char msg[1 << 8] = {0}; - snprintf(msg, sizeof(msg), "t=%d i=%zu rank=%d r32o=%f r32s=%f", - t, i, mpiRank, r32o[i], r32s[i]); + snprintf(msg, sizeof(msg), "t=%d i=%zu rank=%d r32o=%f r32s=%f", t, i, mpiRank, + r32o[i], r32s[i]); ASSERT_LT(std::abs(r32o[i] - r32s[i]), EPSILON) << msg; } } @@ -150,8 +148,7 @@ class BPWRZFPCUDA : public ::testing::TestWithParam TEST_P(BPWRZFPCUDA, ADIOS2BPWRZFPCUDA) { ZFPRateCUDA(GetParam()); } -INSTANTIATE_TEST_SUITE_P(ZFPRate, BPWRZFPCUDA, - ::testing::Values("16", "32", "64")); +INSTANTIATE_TEST_SUITE_P(ZFPRate, BPWRZFPCUDA, ::testing::Values("16", "32", "64")); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadZfpHighLevelAPI.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadZfpHighLevelAPI.cpp index 7145bc7648..9a9eb87ed0 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadZfpHighLevelAPI.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadZfpHighLevelAPI.cpp @@ -19,8 +19,7 @@ void ZfpRate1D(const double rate) { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWriteReadZfp1D_" + std::to_string(rate) + - "_hl.bp"); + const std::string fname("BPWriteReadZfp1D_" + std::to_string(rate) + "_hl.bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -48,8 +47,7 @@ void ZfpRate1D(const double rate) // Writer { #if ADIOS2_USE_MPI - adios2::fstream fw(fname, adios2::fstream::out, MPI_COMM_WORLD, - engineName); + adios2::fstream fw(fname, adios2::fstream::out, MPI_COMM_WORLD, engineName); #else adios2::fstream fw(fname, adios2::fstream::out, engineName); #endif @@ -59,8 +57,7 @@ void ZfpRate1D(const double rate) fw.write("r32", r32s.data(), shape, start, count, {{"zfp", {{"rate", std::to_string(rate)}}}}); fw.write("r64", r64s.data(), shape, start, count, - {{"zfp", {{"rate", std::to_string(2 * rate)}}}}, - adios2::end_step); + {{"zfp", {{"rate", std::to_string(2 * rate)}}}}, adios2::end_step); } fw.close(); } @@ -72,8 +69,7 @@ void ZfpRate1D(const double rate) // reader { #if ADIOS2_USE_MPI - adios2::fstream fr(fname, adios2::fstream::in, MPI_COMM_WORLD, - engineName); + adios2::fstream fr(fname, adios2::fstream::in, MPI_COMM_WORLD, engineName); #else adios2::fstream fr(fname, adios2::fstream::in, engineName); #endif @@ -82,11 +78,9 @@ void ZfpRate1D(const double rate) adios2::fstep fs; while (adios2::getstep(fr, fs)) { - std::vector decompressedR32s = - fs.read("r32", start, count); + std::vector decompressedR32s = fs.read("r32", start, count); - std::vector decompressedR64s = - fs.read("r64", start, count); + std::vector decompressedR64s = fs.read("r64", start, count); for (size_t i = 0; i < Nx; ++i) { @@ -110,8 +104,7 @@ void ZfpRate2D(const double rate) { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWriteReadZfp2D_" + std::to_string(rate) + - "_hl.bp"); + const std::string fname("BPWriteReadZfp2D_" + std::to_string(rate) + "_hl.bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -140,8 +133,7 @@ void ZfpRate2D(const double rate) // writer { #if ADIOS2_USE_MPI - adios2::fstream fw(fname, adios2::fstream::out, MPI_COMM_WORLD, - engineName); + adios2::fstream fw(fname, adios2::fstream::out, MPI_COMM_WORLD, engineName); #else adios2::fstream fw(fname, adios2::fstream::out, engineName); #endif @@ -151,8 +143,7 @@ void ZfpRate2D(const double rate) fw.write("r32", r32s.data(), shape, start, count, {{"zfp", {{"rate", std::to_string(rate)}}}}); fw.write("r64", r64s.data(), shape, start, count, - {{"zfp", {{"rate", std::to_string(rate)}}}}, - adios2::end_step); + {{"zfp", {{"rate", std::to_string(rate)}}}}, adios2::end_step); } fw.close(); } @@ -160,8 +151,7 @@ void ZfpRate2D(const double rate) // reader { #if ADIOS2_USE_MPI - adios2::fstream fr(fname, adios2::fstream::in, MPI_COMM_WORLD, - engineName); + adios2::fstream fr(fname, adios2::fstream::in, MPI_COMM_WORLD, engineName); #else adios2::fstream fr(fname, adios2::fstream::in, engineName); #endif @@ -170,11 +160,9 @@ void ZfpRate2D(const double rate) adios2::fstep fs; while (adios2::getstep(fr, fs)) { - std::vector decompressedR32s = - fs.read("r32", start, count); + std::vector decompressedR32s = fs.read("r32", start, count); - std::vector decompressedR64s = - fs.read("r64", start, count); + std::vector decompressedR64s = fs.read("r64", start, count); for (size_t i = 0; i < Nx; ++i) { @@ -198,8 +186,7 @@ void ZfpRate3D(const double rate) { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWriteReadZfp3D_" + std::to_string(rate) + - "_hl.bp"); + const std::string fname("BPWriteReadZfp3D_" + std::to_string(rate) + "_hl.bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -229,8 +216,7 @@ void ZfpRate3D(const double rate) // writer { #if ADIOS2_USE_MPI - adios2::fstream fw(fname, adios2::fstream::out, MPI_COMM_WORLD, - engineName); + adios2::fstream fw(fname, adios2::fstream::out, MPI_COMM_WORLD, engineName); #else adios2::fstream fw(fname, adios2::fstream::out, engineName); #endif @@ -240,8 +226,7 @@ void ZfpRate3D(const double rate) fw.write("r32", r32s.data(), shape, start, count, {{"zfp", {{"accuracy", std::to_string(rate)}}}}); fw.write("r64", r64s.data(), shape, start, count, - {{"zfp", {{"accuracy", std::to_string(rate)}}}}, - adios2::end_step); + {{"zfp", {{"accuracy", std::to_string(rate)}}}}, adios2::end_step); } fw.close(); } @@ -249,8 +234,7 @@ void ZfpRate3D(const double rate) // reader { #if ADIOS2_USE_MPI - adios2::fstream fr(fname, adios2::fstream::in, MPI_COMM_WORLD, - engineName); + adios2::fstream fr(fname, adios2::fstream::in, MPI_COMM_WORLD, engineName); #else adios2::fstream fr(fname, adios2::fstream::in, engineName); #endif @@ -259,11 +243,9 @@ void ZfpRate3D(const double rate) adios2::fstep fs; while (adios2::getstep(fr, fs)) { - std::vector decompressedR32s = - fs.read("r32", start, count); + std::vector decompressedR32s = fs.read("r32", start, count); - std::vector decompressedR64s = - fs.read("r64", start, count); + std::vector decompressedR64s = fs.read("r64", start, count); for (size_t i = 0; i < Nx; ++i) { @@ -287,8 +269,7 @@ void ZfpRate1DSel(const double rate) { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWriteReadZfp1DSel_" + std::to_string(rate) + - "_hl.bp"); + const std::string fname("BPWriteReadZfp1DSel_" + std::to_string(rate) + "_hl.bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -308,8 +289,7 @@ void ZfpRate1DSel(const double rate) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - const adios2::Dims startSel{static_cast(mpiRank) * Nx + - Nx / 2}; + const adios2::Dims startSel{static_cast(mpiRank) * Nx + Nx / 2}; const adios2::Dims countSel{Nx / 2}; #if ADIOS2_USE_MPI @@ -320,8 +300,7 @@ void ZfpRate1DSel(const double rate) // Writer { #if ADIOS2_USE_MPI - adios2::fstream fw(fname, adios2::fstream::out, MPI_COMM_WORLD, - engineName); + adios2::fstream fw(fname, adios2::fstream::out, MPI_COMM_WORLD, engineName); #else adios2::fstream fw(fname, adios2::fstream::out, engineName); #endif @@ -331,8 +310,7 @@ void ZfpRate1DSel(const double rate) fw.write("r32", r32s.data(), shape, start, count, {{"zfp", {{"rate", std::to_string(rate)}}}}); fw.write("r64", r64s.data(), shape, start, count, - {{"zfp", {{"rate", std::to_string(2 * rate)}}}}, - adios2::end_step); + {{"zfp", {{"rate", std::to_string(2 * rate)}}}}, adios2::end_step); } fw.close(); } @@ -344,8 +322,7 @@ void ZfpRate1DSel(const double rate) // reader { #if ADIOS2_USE_MPI - adios2::fstream fr(fname, adios2::fstream::in, MPI_COMM_WORLD, - engineName); + adios2::fstream fr(fname, adios2::fstream::in, MPI_COMM_WORLD, engineName); #else adios2::fstream fr(fname, adios2::fstream::in, engineName); #endif @@ -354,11 +331,9 @@ void ZfpRate1DSel(const double rate) adios2::fstep fs; while (adios2::getstep(fr, fs)) { - std::vector decompressedR32s = - fs.read("r32", startSel, countSel); + std::vector decompressedR32s = fs.read("r32", startSel, countSel); - std::vector decompressedR64s = - fs.read("r64", startSel, countSel); + std::vector decompressedR64s = fs.read("r64", startSel, countSel); for (size_t i = 0; i < Nx / 2; ++i) { @@ -366,12 +341,8 @@ void ZfpRate1DSel(const double rate) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 + i]), - 1E-4) - << msg; - ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 + i]), - 1E-4) - << msg; + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 + i]), 1E-4) << msg; + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 + i]), 1E-4) << msg; } ++t; } @@ -386,8 +357,7 @@ void ZfpRate2DSel(const double rate) { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWriteReadZfp2DSel_" + std::to_string(rate) + - "_hl.bp"); + const std::string fname("BPWriteReadZfp2DSel_" + std::to_string(rate) + "_hl.bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -419,8 +389,7 @@ void ZfpRate2DSel(const double rate) // Writer { #if ADIOS2_USE_MPI - adios2::fstream fw(fname, adios2::fstream::out, MPI_COMM_WORLD, - engineName); + adios2::fstream fw(fname, adios2::fstream::out, MPI_COMM_WORLD, engineName); #else adios2::fstream fw(fname, adios2::fstream::out, engineName); #endif @@ -430,8 +399,7 @@ void ZfpRate2DSel(const double rate) fw.write("r32", r32s.data(), shape, start, count, {{"zfp", {{"rate", std::to_string(rate)}}}}); fw.write("r64", r64s.data(), shape, start, count, - {{"zfp", {{"rate", std::to_string(2 * rate)}}}}, - adios2::end_step); + {{"zfp", {{"rate", std::to_string(2 * rate)}}}}, adios2::end_step); } fw.close(); } @@ -443,8 +411,7 @@ void ZfpRate2DSel(const double rate) // reader { #if ADIOS2_USE_MPI - adios2::fstream fr(fname, adios2::fstream::in, MPI_COMM_WORLD, - engineName); + adios2::fstream fr(fname, adios2::fstream::in, MPI_COMM_WORLD, engineName); #else adios2::fstream fr(fname, adios2::fstream::in, engineName); #endif @@ -453,11 +420,9 @@ void ZfpRate2DSel(const double rate) adios2::fstep fs; while (adios2::getstep(fr, fs)) { - std::vector decompressedR32s = - fs.read("r32", startSel, countSel); + std::vector decompressedR32s = fs.read("r32", startSel, countSel); - std::vector decompressedR64s = - fs.read("r64", startSel, countSel); + std::vector decompressedR64s = fs.read("r64", startSel, countSel); for (size_t i = 0; i < Nx / 2 * Ny; ++i) { @@ -465,12 +430,8 @@ void ZfpRate2DSel(const double rate) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny + i]), - 1E-4) - << msg; - ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny + i]), - 1E-4) - << msg; + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny + i]), 1E-4) << msg; + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny + i]), 1E-4) << msg; } ++t; } @@ -485,8 +446,7 @@ void ZfpRate3DSel(const double rate) { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWriteReadZfp3DSel_" + std::to_string(rate) + - "_hl.bp"); + const std::string fname("BPWriteReadZfp3DSel_" + std::to_string(rate) + "_hl.bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -508,8 +468,7 @@ void ZfpRate3DSel(const double rate) const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - const adios2::Dims startSel{static_cast(mpiRank) * Nx + Nx / 2, - 0, 0}; + const adios2::Dims startSel{static_cast(mpiRank) * Nx + Nx / 2, 0, 0}; const adios2::Dims countSel{Nx / 2, Ny, Nz}; #if ADIOS2_USE_MPI @@ -520,8 +479,7 @@ void ZfpRate3DSel(const double rate) // Writer { #if ADIOS2_USE_MPI - adios2::fstream fw(fname, adios2::fstream::out, MPI_COMM_WORLD, - engineName); + adios2::fstream fw(fname, adios2::fstream::out, MPI_COMM_WORLD, engineName); #else adios2::fstream fw(fname, adios2::fstream::out, engineName); #endif @@ -531,8 +489,7 @@ void ZfpRate3DSel(const double rate) fw.write("r32", r32s.data(), shape, start, count, {{"zfp", {{"rate", std::to_string(rate)}}}}); fw.write("r64", r64s.data(), shape, start, count, - {{"zfp", {{"rate", std::to_string(2 * rate)}}}}, - adios2::end_step); + {{"zfp", {{"rate", std::to_string(2 * rate)}}}}, adios2::end_step); } fw.close(); } @@ -544,8 +501,7 @@ void ZfpRate3DSel(const double rate) // reader { #if ADIOS2_USE_MPI - adios2::fstream fr(fname, adios2::fstream::in, MPI_COMM_WORLD, - engineName); + adios2::fstream fr(fname, adios2::fstream::in, MPI_COMM_WORLD, engineName); #else adios2::fstream fr(fname, adios2::fstream::in, engineName); #endif @@ -554,11 +510,9 @@ void ZfpRate3DSel(const double rate) adios2::fstep fs; while (adios2::getstep(fr, fs)) { - std::vector decompressedR32s = - fs.read("r32", startSel, countSel); + std::vector decompressedR32s = fs.read("r32", startSel, countSel); - std::vector decompressedR64s = - fs.read("r64", startSel, countSel); + std::vector decompressedR64s = fs.read("r64", startSel, countSel); for (size_t i = 0; i < Nx / 2 * Ny * Nz; ++i) { @@ -566,14 +520,8 @@ void ZfpRate3DSel(const double rate) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - ASSERT_LT( - std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny * Nz + i]), - 1E-4) - << msg; - ASSERT_LT( - std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny * Nz + i]), - 1E-4) - << msg; + ASSERT_LT(std::abs(decompressedR32s[i] - r32s[Nx / 2 * Ny * Nz + i]), 1E-4) << msg; + ASSERT_LT(std::abs(decompressedR64s[i] - r64s[Nx / 2 * Ny * Nz + i]), 1E-4) << msg; } ++t; } @@ -588,8 +536,7 @@ void ZfpRate2DSmallSel(const double rate) { // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname("BPWriteReadZfp2DSmallSel_" + std::to_string(rate) + - "_hl.bp"); + const std::string fname("BPWriteReadZfp2DSmallSel_" + std::to_string(rate) + "_hl.bp"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -599,14 +546,12 @@ void ZfpRate2DSmallSel(const double rate) // Number of steps const size_t NSteps = 1; - const std::vector r32s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, - 0.07, 0.08, 0.09, 0.10, 0.11, 0.12, 0.13, - 0.14, 0.15, 0.16, 0.17, 0.18, 0.19, 0.20, - 0.21, 0.22, 0.23, 0.24}; - const std::vector r64s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, - 0.07, 0.08, 0.09, 0.10, 0.11, 0.12, 0.13, - 0.14, 0.15, 0.16, 0.17, 0.18, 0.19, 0.20, - 0.21, 0.22, 0.23, 0.24}; + const std::vector r32s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, 0.07, 0.08, + 0.09, 0.10, 0.11, 0.12, 0.13, 0.14, 0.15, 0.16, 0.17, + 0.18, 0.19, 0.20, 0.21, 0.22, 0.23, 0.24}; + const std::vector r64s = {0.00, 0.01, 0.02, 0.03, 0.04, 0.05, 0.06, 0.07, 0.08, + 0.09, 0.10, 0.11, 0.12, 0.13, 0.14, 0.15, 0.16, 0.17, + 0.18, 0.19, 0.20, 0.21, 0.22, 0.23, 0.24}; const adios2::Dims shape{static_cast(Nx * mpiSize), Ny}; const adios2::Dims start{static_cast(Nx * mpiRank), 0}; @@ -623,8 +568,7 @@ void ZfpRate2DSmallSel(const double rate) // Writer { #if ADIOS2_USE_MPI - adios2::fstream fw(fname, adios2::fstream::out, MPI_COMM_WORLD, - engineName); + adios2::fstream fw(fname, adios2::fstream::out, MPI_COMM_WORLD, engineName); #else adios2::fstream fw(fname, adios2::fstream::out, engineName); #endif @@ -634,8 +578,7 @@ void ZfpRate2DSmallSel(const double rate) fw.write("r32", r32s.data(), shape, start, count, {{"zfp", {{"rate", std::to_string(rate)}}}}); fw.write("r64", r64s.data(), shape, start, count, - {{"zfp", {{"rate", std::to_string(2 * rate)}}}}, - adios2::end_step); + {{"zfp", {{"rate", std::to_string(2 * rate)}}}}, adios2::end_step); } fw.close(); } @@ -647,8 +590,7 @@ void ZfpRate2DSmallSel(const double rate) // reader { #if ADIOS2_USE_MPI - adios2::fstream fr(fname, adios2::fstream::in, MPI_COMM_WORLD, - engineName); + adios2::fstream fr(fname, adios2::fstream::in, MPI_COMM_WORLD, engineName); #else adios2::fstream fr(fname, adios2::fstream::in, engineName); #endif @@ -657,11 +599,9 @@ void ZfpRate2DSmallSel(const double rate) adios2::fstep fs; while (adios2::getstep(fr, fs)) { - std::vector decompressedR32s = - fs.read("r32", startSel, countSel); + std::vector decompressedR32s = fs.read("r32", startSel, countSel); - std::vector decompressedR64s = - fs.read("r64", startSel, countSel); + std::vector decompressedR64s = fs.read("r64", startSel, countSel); ASSERT_LT(std::abs(decompressedR32s[0] - 0.06), 0.01); ASSERT_LT(std::abs(decompressedR64s[0] - 0.06), 0.01); @@ -693,37 +633,18 @@ class BPWriteReadZfpHighLevelAPI : public ::testing::TestWithParam virtual void TearDown() {} }; -TEST_P(BPWriteReadZfpHighLevelAPI, ADIOS2BPWriteReadZfp1D) -{ - ZfpRate1D(GetParam()); -} -TEST_P(BPWriteReadZfpHighLevelAPI, ADIOS2BPWriteReadZfp2D) -{ - ZfpRate2D(GetParam()); -} -TEST_P(BPWriteReadZfpHighLevelAPI, ADIOS2BPWriteReadZfp3D) -{ - ZfpRate3D(GetParam()); -} -TEST_P(BPWriteReadZfpHighLevelAPI, ADIOS2BPWriteReadZfp1DSel) -{ - ZfpRate1DSel(GetParam()); -} -TEST_P(BPWriteReadZfpHighLevelAPI, ADIOS2BPWriteReadZfp2DSel) -{ - ZfpRate2DSel(GetParam()); -} -TEST_P(BPWriteReadZfpHighLevelAPI, ADIOS2BPWriteReadZfp3DSel) -{ - ZfpRate3DSel(GetParam()); -} +TEST_P(BPWriteReadZfpHighLevelAPI, ADIOS2BPWriteReadZfp1D) { ZfpRate1D(GetParam()); } +TEST_P(BPWriteReadZfpHighLevelAPI, ADIOS2BPWriteReadZfp2D) { ZfpRate2D(GetParam()); } +TEST_P(BPWriteReadZfpHighLevelAPI, ADIOS2BPWriteReadZfp3D) { ZfpRate3D(GetParam()); } +TEST_P(BPWriteReadZfpHighLevelAPI, ADIOS2BPWriteReadZfp1DSel) { ZfpRate1DSel(GetParam()); } +TEST_P(BPWriteReadZfpHighLevelAPI, ADIOS2BPWriteReadZfp2DSel) { ZfpRate2DSel(GetParam()); } +TEST_P(BPWriteReadZfpHighLevelAPI, ADIOS2BPWriteReadZfp3DSel) { ZfpRate3DSel(GetParam()); } TEST_P(BPWriteReadZfpHighLevelAPI, ADIOS2BPWriteReadZfp2DSmallSel) { ZfpRate2DSmallSel(GetParam()); } -INSTANTIATE_TEST_SUITE_P(ZfpRate, BPWriteReadZfpHighLevelAPI, - ::testing::Values(8., 9., 10)); +INSTANTIATE_TEST_SUITE_P(ZfpRate, BPWriteReadZfpHighLevelAPI, ::testing::Values(8., 9., 10)); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/bp/operations/TestBPWriteReadZfpRemoveOperations.cpp b/testing/adios2/engine/bp/operations/TestBPWriteReadZfpRemoveOperations.cpp index 3cfe14a6d2..7aaf7c5c8a 100644 --- a/testing/adios2/engine/bp/operations/TestBPWriteReadZfpRemoveOperations.cpp +++ b/testing/adios2/engine/bp/operations/TestBPWriteReadZfpRemoveOperations.cpp @@ -61,14 +61,11 @@ void ZFPRate1D(const std::string rate) const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator ZFPOp = - adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); + adios2::Operator ZFPOp = adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -87,11 +84,9 @@ void ZFPRate1D(const std::string rate) } else { - var_r32.AddOperation(ZFPOp, - {{adios2::ops::zfp::key::rate, rate}}); - var_r64.AddOperation(ZFPOp, - {{adios2::ops::zfp::key::rate, - std::to_string(2 * std::stod(rate))}}); + var_r32.AddOperation(ZFPOp, {{adios2::ops::zfp::key::rate, rate}}); + var_r64.AddOperation( + ZFPOp, {{adios2::ops::zfp::key::rate, std::to_string(2 * std::stod(rate))}}); EXPECT_FALSE(var_r32.Operations().empty()); EXPECT_FALSE(var_r64.Operations().empty()); @@ -213,14 +208,11 @@ void ZFPRate2D(const std::string rate) const adios2::Dims start{static_cast(Nx * mpiRank), 0}; const adios2::Dims count{Nx, Ny}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator zfpOp = - adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); + adios2::Operator zfpOp = adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); var_r32.AddOperation(zfpOp, {{"Accuracy", rate}}); var_r64.AddOperation(zfpOp, {{"accuracy", rate}}); @@ -242,11 +234,9 @@ void ZFPRate2D(const std::string rate) } else { - var_r32.AddOperation(zfpOp, - {{adios2::ops::zfp::key::rate, rate}}); - var_r64.AddOperation(zfpOp, - {{adios2::ops::zfp::key::rate, - std::to_string(2 * std::stod(rate))}}); + var_r32.AddOperation(zfpOp, {{adios2::ops::zfp::key::rate, rate}}); + var_r64.AddOperation( + zfpOp, {{adios2::ops::zfp::key::rate, std::to_string(2 * std::stod(rate))}}); EXPECT_FALSE(var_r32.Operations().empty()); EXPECT_FALSE(var_r64.Operations().empty()); @@ -368,14 +358,11 @@ void ZFPRate3D(const std::string rate) const adios2::Dims start{static_cast(Nx * mpiRank), 0, 0}; const adios2::Dims count{Nx, Ny, Nz}; - auto var_r32 = io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - auto var_r64 = io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + auto var_r32 = io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + auto var_r64 = io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); // add operations - adios2::Operator zfpOp = - adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); + adios2::Operator zfpOp = adios.DefineOperator("ZFPCompressor", adios2::ops::LossyZFP); adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); @@ -394,11 +381,9 @@ void ZFPRate3D(const std::string rate) } else { - var_r32.AddOperation(zfpOp, - {{adios2::ops::zfp::key::rate, rate}}); - var_r64.AddOperation(zfpOp, - {{adios2::ops::zfp::key::rate, - std::to_string(2 * std::stod(rate))}}); + var_r32.AddOperation(zfpOp, {{adios2::ops::zfp::key::rate, rate}}); + var_r64.AddOperation( + zfpOp, {{adios2::ops::zfp::key::rate, std::to_string(2 * std::stod(rate))}}); EXPECT_FALSE(var_r32.Operations().empty()); EXPECT_FALSE(var_r64.Operations().empty()); @@ -491,8 +476,7 @@ TEST_P(BPWRZFPODD, ADIOS2BPWRZFPODD1D) { ZFPRate1D(GetParam()); } TEST_P(BPWRZFPODD, ADIOS2BPWRZFPODD2D) { ZFPRate2D(GetParam()); } TEST_P(BPWRZFPODD, ADIOS2BPWRZFPODD3D) { ZFPRate3D(GetParam()); } -INSTANTIATE_TEST_SUITE_P(ZFPRate, BPWRZFPODD, - ::testing::Values("8", "9", "10")); +INSTANTIATE_TEST_SUITE_P(ZFPRate, BPWRZFPODD, ::testing::Values("8", "9", "10")); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/common/TestEngineCommon.cpp b/testing/adios2/engine/common/TestEngineCommon.cpp index 254773a232..6da33dddd7 100644 --- a/testing/adios2/engine/common/TestEngineCommon.cpp +++ b/testing/adios2/engine/common/TestEngineCommon.cpp @@ -54,8 +54,7 @@ adios2::Params ParseEngineParams(std::string Input) std::getline(ss2, ParamName, ':'); if (!std::getline(ss2, ParamValue, ':')) { - throw std::invalid_argument("Engine parameter \"" + Param + - "\" missing value"); + throw std::invalid_argument("Engine parameter \"" + Param + "\" missing value"); } Ret[Trim(ParamName)] = Trim(ParamValue); } @@ -68,13 +67,13 @@ static unsigned int ParseUintParam(const std::string &optionName, char *arg) long retval = std::strtol(arg, &end, 10); if (end[0] || errno == ERANGE) { - throw std::invalid_argument("Invalid value given for " + optionName + - ": " + std::string(arg)); + throw std::invalid_argument("Invalid value given for " + optionName + ": " + + std::string(arg)); } if (retval < 0) { - throw std::invalid_argument("Negative value given for " + optionName + - ": " + std::string(arg)); + throw std::invalid_argument("Negative value given for " + optionName + ": " + + std::string(arg)); } return static_cast(retval); } @@ -103,18 +102,15 @@ TEST_F(Common, NewAttributeEveryStep) const int nreaders = 1; if (!wrank) { - std::cout << "test " << nwriters << " writers with " << nreaders - << " readers " - << (serializeWriterReader ? "sequentially" : "concurrently") - << std::endl; + std::cout << "test " << nwriters << " writers with " << nreaders << " readers " + << (serializeWriterReader ? "sequentially" : "concurrently") << std::endl; } if (nwriters + nreaders > numprocs) { if (!wrank) { - std::cout << "skip test: writers+readers > available processors " - << std::endl; + std::cout << "skip test: writers+readers > available processors " << std::endl; } return; } @@ -140,8 +136,7 @@ TEST_F(Common, NewAttributeEveryStep) if (color == 0) { - std::cout << "Process wrank " << wrank << " plays Writer rank " << rank - << std::endl; + std::cout << "Process wrank " << wrank << " plays Writer rank " << rank << std::endl; if (!rank) { std::cout << "There are " << nproc << " Writers" << std::endl; @@ -154,8 +149,8 @@ TEST_F(Common, NewAttributeEveryStep) const size_t shape = static_cast(nproc); const size_t start = static_cast(rank); - adios2::Variable var = io.DefineVariable( - "v", {shape}, {start}, {1}, adios2::ConstantDims); + adios2::Variable var = + io.DefineVariable("v", {shape}, {start}, {1}, adios2::ConstantDims); io.DefineAttribute("v/unit", "km/s"); adios2::Engine writer = io.Open(streamName, adios2::Mode::Write, comm); @@ -182,8 +177,7 @@ TEST_F(Common, NewAttributeEveryStep) { MPI_Barrier(MPI_COMM_WORLD); } - std::cout << "Process wrank " << wrank << " plays Reader rank " << rank - << std::endl; + std::cout << "Process wrank " << wrank << " plays Reader rank " << rank << std::endl; int rank, nproc; MPI_Comm_rank(comm, &rank); MPI_Comm_size(comm, &nproc); @@ -200,12 +194,10 @@ TEST_F(Common, NewAttributeEveryStep) for (size_t step = 0; step < steps; ++step) { - adios2::StepStatus status = - reader.BeginStep(adios2::StepMode::Read); + adios2::StepStatus status = reader.BeginStep(adios2::StepMode::Read); if (status != adios2::StepStatus::OK) { - throw std::runtime_error("Expected step " + - std::to_string(step) + + throw std::runtime_error("Expected step " + std::to_string(step) + " to be available in Reader but " "BeginStep() returned not-OK"); } @@ -220,17 +212,15 @@ TEST_F(Common, NewAttributeEveryStep) auto aUnit = io.InquireAttribute("v/unit"); if (!aUnit) { - throw std::ios_base::failure( - "Missing 'v/unit' attribute in step " + - std::to_string(step)); + throw std::ios_base::failure("Missing 'v/unit' attribute in step " + + std::to_string(step)); } const std::string aname = "a" + std::to_string(step); auto aStep = io.InquireAttribute(aname); if (!aStep) { - throw std::ios_base::failure("Missing '" + aname + - "' attribute in step " + + throw std::ios_base::failure("Missing '" + aname + "' attribute in step " + std::to_string(step)); } uint64_t expectedAttributeValue = step + 1; @@ -241,12 +231,10 @@ TEST_F(Common, NewAttributeEveryStep) if (!rank) { - std::cout << "In step " << step - << " Readers got attribute 'v/unit' with value " + std::cout << "In step " << step << " Readers got attribute 'v/unit' with value " << aUnit.Data().front() << std::endl; - std::cout << "In step " << step << " Readers got attribute '" - << aname << "' with value " << aStep.Data().front() - << std::endl; + std::cout << "In step " << step << " Readers got attribute '" << aname + << "' with value " << aStep.Data().front() << std::endl; } double d[nwriters]; @@ -258,8 +246,8 @@ TEST_F(Common, NewAttributeEveryStep) EXPECT_EQ(d[0], expectedScalarValue) << "Error in read, did not receive the expected values for " "'v':" - << " rank " << rank << ", step " << step << ", expected " - << expectedScalarValue << ", received " << d[0]; + << " rank " << rank << ", step " << step << ", expected " << expectedScalarValue + << ", received " << d[0]; } reader.Close(); } @@ -316,8 +304,8 @@ int main(int argc, char **argv) if (!wrank) { - std::cout << "Test " << engineName << " engine with " << numprocs - << " processes " << std::endl; + std::cout << "Test " << engineName << " engine with " << numprocs << " processes " + << std::endl; } int result; diff --git a/testing/adios2/engine/dataman/TestDataMan1D.cpp b/testing/adios2/engine/dataman/TestDataMan1D.cpp index d83a143fc6..35cbf05107 100644 --- a/testing/adios2/engine/dataman/TestDataMan1D.cpp +++ b/testing/adios2/engine/dataman/TestDataMan1D.cpp @@ -26,8 +26,7 @@ void GenData(std::vector> &data, const size_t step) { for (size_t i = 0; i < data.size(); ++i) { - data[i] = {static_cast(i + 10000 + step * 100), - static_cast(i + 10000)}; + data[i] = {static_cast(i + 10000 + step * 100), static_cast(i + 10000)}; } } @@ -84,11 +83,10 @@ void VerifyData(const std::vector &data, const size_t step) VerifyData(data.data(), data.size(), step); } -void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); adios2::ADIOS adios; adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("DataMan"); @@ -104,21 +102,16 @@ void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varUInt64s = io.DefineVariable("varUInt64s"); auto varString = io.DefineVariable("varString"); io.DefineAttribute("AttInt", 110); @@ -153,11 +146,10 @@ void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void DataManReader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void DataManReader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); adios2::ADIOS adios; adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("DataMan"); @@ -185,29 +177,22 @@ void DataManReader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 12); currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varUInt64s = - io.InquireVariable("varUInt64s"); - adios2::Variable varString = - io.InquireVariable("varString"); + adios2::Variable varUInt64s = io.InquireVariable("varUInt64s"); + adios2::Variable varString = io.InquireVariable("varString"); auto charsBlocksInfo = engine.AllStepsBlocksInfo(varChars); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -280,14 +265,11 @@ TEST_F(DataManEngineTest, 1D) Dims start = {0}; Dims count = {10}; size_t steps = 5000; - adios2::Params engineParams = {{"IPAddress", "127.0.0.1"}, - {"Port", "12300"}}; + adios2::Params engineParams = {{"IPAddress", "127.0.0.1"}, {"Port", "12300"}}; // run workflow - auto r = - std::thread(DataManReader, shape, start, count, steps, engineParams); - auto w = - std::thread(DataManWriter, shape, start, count, steps, engineParams); + auto r = std::thread(DataManReader, shape, start, count, steps, engineParams); + auto w = std::thread(DataManWriter, shape, start, count, steps, engineParams); w.join(); r.join(); } diff --git a/testing/adios2/engine/dataman/TestDataMan1DSuperLarge.cpp b/testing/adios2/engine/dataman/TestDataMan1DSuperLarge.cpp index 2a306d36e9..bbf722cc51 100644 --- a/testing/adios2/engine/dataman/TestDataMan1DSuperLarge.cpp +++ b/testing/adios2/engine/dataman/TestDataMan1DSuperLarge.cpp @@ -21,8 +21,7 @@ void GenData(std::vector> &data, const size_t step) { for (size_t i = 0; i < data.size(); ++i) { - data[i] = {static_cast(i + 10000 + step * 100), - static_cast(i + 10000)}; + data[i] = {static_cast(i + 10000 + step * 100), static_cast(i + 10000)}; } } @@ -79,11 +78,10 @@ void VerifyData(const std::vector &data, const size_t step) VerifyData(data.data(), data.size(), step); } -void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); adios2::ADIOS adios; adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("DataMan"); @@ -99,21 +97,16 @@ void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varUInt64s = io.DefineVariable("varUInt64s"); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open("stream", adios2::Mode::Write); @@ -146,11 +139,10 @@ void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void DataManReader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void DataManReader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); adios2::ADIOS adios; adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("DataMan"); @@ -178,27 +170,21 @@ void DataManReader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 11); currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varUInt64s = - io.InquireVariable("varUInt64s"); + adios2::Variable varUInt64s = io.InquireVariable("varUInt64s"); auto charsBlocksInfo = engine.AllStepsBlocksInfo(varChars); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -273,13 +259,10 @@ TEST_F(DataManEngineTest, 1DSuperLarge) {"Port", "13480"}, {"MaxStepBufferSize", "10000000"}, {"TransportMode", "reliable"}}; - auto r = std::thread(DataManReader, shape, start, count, steps, - readerEngineParams); - adios2::Params writerEngineParams = {{"IPAddress", "127.0.0.1"}, - {"Port", "13480"}, - {"TransportMode", "reliable"}}; - auto w = std::thread(DataManWriter, shape, start, count, steps, - writerEngineParams); + auto r = std::thread(DataManReader, shape, start, count, steps, readerEngineParams); + adios2::Params writerEngineParams = { + {"IPAddress", "127.0.0.1"}, {"Port", "13480"}, {"TransportMode", "reliable"}}; + auto w = std::thread(DataManWriter, shape, start, count, steps, writerEngineParams); w.join(); r.join(); } diff --git a/testing/adios2/engine/dataman/TestDataMan2DMemSelect.cpp b/testing/adios2/engine/dataman/TestDataMan2DMemSelect.cpp index 99fa0d80cd..37efe9db13 100644 --- a/testing/adios2/engine/dataman/TestDataMan2DMemSelect.cpp +++ b/testing/adios2/engine/dataman/TestDataMan2DMemSelect.cpp @@ -23,11 +23,9 @@ class DataManEngineTest : public ::testing::Test }; template -void PrintData(const T *data, const size_t step, const Dims &start, - const Dims &count) +void PrintData(const T *data, const size_t step, const Dims &start, const Dims &count) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::cout << "Step: " << step << " Size:" << size << "\n"; size_t printsize = 128; @@ -51,8 +49,8 @@ void PrintData(const T *data, const size_t step, const Dims &start, } template -void GenData(std::vector &data, const size_t step, const Dims &start, - const Dims &count, const Dims &shape) +void GenData(std::vector &data, const size_t step, const Dims &start, const Dims &count, + const Dims &shape) { if (start.size() == 2) { @@ -60,19 +58,17 @@ void GenData(std::vector &data, const size_t step, const Dims &start, { for (size_t j = 0; j < count[1]; ++j) { - data[i * count[1] + j] = - (i + start[1]) * shape[1] + j + start[0]; + data[i * count[1] + j] = (i + start[1]) * shape[1] + j + start[0]; } } } } template -void VerifyData(const std::complex *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape) +void VerifyData(const std::complex *data, size_t step, const Dims &start, const Dims &count, + const Dims &shape) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::vector> tmpdata(size); GenData(tmpdata, step, start, count, shape); for (size_t i = 0; i < size; ++i) @@ -82,11 +78,9 @@ void VerifyData(const std::complex *data, size_t step, const Dims &start, } template -void VerifyData(const T *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape) +void VerifyData(const T *data, size_t step, const Dims &start, const Dims &count, const Dims &shape) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); bool compressed = false; std::vector tmpdata(size); GenData(tmpdata, step, start, count, shape); @@ -99,12 +93,10 @@ void VerifyData(const T *data, size_t step, const Dims &start, } } -void DataManWriterP2PMemSelect(const Dims &shape, const Dims &start, - const Dims &count, const size_t steps, - const adios2::Params &engineParams) +void DataManWriterP2PMemSelect(const Dims &shape, const Dims &start, const Dims &count, + const size_t steps, const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); adios2::ADIOS adios; adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("DataMan"); @@ -120,21 +112,16 @@ void DataManWriterP2PMemSelect(const Dims &shape, const Dims &start, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open("stream", adios2::Mode::Write); for (size_t i = 0; i < steps; ++i) @@ -165,9 +152,8 @@ void DataManWriterP2PMemSelect(const Dims &shape, const Dims &start, engine.Close(); } -void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, - const Dims &count, const Dims &memStart, - const Dims &memCount, const size_t steps, +void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, const Dims &count, + const Dims &memStart, const Dims &memCount, const size_t steps, const adios2::Params &engineParams) { adios2::ADIOS adios; @@ -176,8 +162,8 @@ void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, io.SetParameters(engineParams); adios2::Engine engine = io.Open("stream", adios2::Mode::Read); - size_t datasize = std::accumulate(memCount.begin(), memCount.end(), 1, - std::multiplies()); + size_t datasize = + std::accumulate(memCount.begin(), memCount.end(), 1, std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -209,21 +195,16 @@ void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, GenData(myDoubles, currentStep, memStart, memCount, shape); GenData(myComplexes, currentStep, memStart, memCount, shape); GenData(myDComplexes, currentStep, memStart, memCount, shape); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = @@ -265,17 +246,13 @@ void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, VerifyData(myChars.data(), currentStep, memStart, memCount, shape); VerifyData(myUChars.data(), currentStep, memStart, memCount, shape); VerifyData(myShorts.data(), currentStep, memStart, memCount, shape); - VerifyData(myUShorts.data(), currentStep, memStart, memCount, - shape); + VerifyData(myUShorts.data(), currentStep, memStart, memCount, shape); VerifyData(myInts.data(), currentStep, memStart, memCount, shape); VerifyData(myUInts.data(), currentStep, memStart, memCount, shape); VerifyData(myFloats.data(), currentStep, memStart, memCount, shape); - VerifyData(myDoubles.data(), currentStep, memStart, memCount, - shape); - VerifyData(myComplexes.data(), currentStep, memStart, memCount, - shape); - VerifyData(myDComplexes.data(), currentStep, memStart, memCount, - shape); + VerifyData(myDoubles.data(), currentStep, memStart, memCount, shape); + VerifyData(myComplexes.data(), currentStep, memStart, memCount, shape); + VerifyData(myDComplexes.data(), currentStep, memStart, memCount, shape); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) @@ -309,15 +286,13 @@ TEST_F(DataManEngineTest, 2D_MemSelect) memcount = {7, 9}; size_t steps = 5000; - adios2::Params engineParams = { - {"IPAddress", "127.0.0.1"}, {"Port", "12320"}, {"Verbose", "0"}}; - - auto r = std::thread(DataManReaderP2PMemSelect, shape, start, count, - memstart, memcount, steps, engineParams); + adios2::Params engineParams = {{"IPAddress", "127.0.0.1"}, {"Port", "12320"}, {"Verbose", "0"}}; - auto w = std::thread(DataManWriterP2PMemSelect, shape, start, count, steps, + auto r = std::thread(DataManReaderP2PMemSelect, shape, start, count, memstart, memcount, steps, engineParams); + auto w = std::thread(DataManWriterP2PMemSelect, shape, start, count, steps, engineParams); + w.join(); r.join(); diff --git a/testing/adios2/engine/dataman/TestDataMan2DSz.cpp b/testing/adios2/engine/dataman/TestDataMan2DSz.cpp index 4e50973324..af8d1bca71 100644 --- a/testing/adios2/engine/dataman/TestDataMan2DSz.cpp +++ b/testing/adios2/engine/dataman/TestDataMan2DSz.cpp @@ -24,11 +24,9 @@ class DataManEngineTest : public ::testing::Test }; template -void PrintData(const T *data, const size_t step, const Dims &start, - const Dims &count) +void PrintData(const T *data, const size_t step, const Dims &start, const Dims &count) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::cout << "Step: " << step << " Size:" << size << "\n"; size_t printsize = 128; @@ -52,8 +50,8 @@ void PrintData(const T *data, const size_t step, const Dims &start, } template -void GenData(std::vector &data, const size_t step, const Dims &start, - const Dims &count, const Dims &shape) +void GenData(std::vector &data, const size_t step, const Dims &start, const Dims &count, + const Dims &shape) { if (start.size() == 2) { @@ -61,19 +59,17 @@ void GenData(std::vector &data, const size_t step, const Dims &start, { for (size_t j = 0; j < count[1]; ++j) { - data[i * count[1] + j] = - (i + start[1]) * shape[1] + j + start[0] + 0.01; + data[i * count[1] + j] = (i + start[1]) * shape[1] + j + start[0] + 0.01; } } } } template -void VerifyData(const std::complex *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape) +void VerifyData(const std::complex *data, size_t step, const Dims &start, const Dims &count, + const Dims &shape) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::vector> tmpdata(size); GenData(tmpdata, step, start, count, shape); for (size_t i = 0; i < size; ++i) @@ -84,11 +80,9 @@ void VerifyData(const std::complex *data, size_t step, const Dims &start, } template -void VerifyData(const T *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape) +void VerifyData(const T *data, size_t step, const Dims &start, const Dims &count, const Dims &shape) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::vector tmpdata(size); GenData(tmpdata, step, start, count, shape); for (size_t i = 0; i < size; ++i) @@ -97,12 +91,10 @@ void VerifyData(const T *data, size_t step, const Dims &start, } } -void DataManWriterP2PMemSelect(const Dims &shape, const Dims &start, - const Dims &count, const size_t steps, - const adios2::Params &engineParams) +void DataManWriterP2PMemSelect(const Dims &shape, const Dims &start, const Dims &count, + const size_t steps, const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); adios2::ADIOS adios; adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("DataMan"); @@ -119,21 +111,16 @@ void DataManWriterP2PMemSelect(const Dims &shape, const Dims &start, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open("stream", adios2::Mode::Write); for (size_t i = 0; i < steps; ++i) @@ -164,9 +151,8 @@ void DataManWriterP2PMemSelect(const Dims &shape, const Dims &start, engine.Close(); } -void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, - const Dims &count, const Dims &memStart, - const Dims &memCount, const size_t steps, +void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, const Dims &count, + const Dims &memStart, const Dims &memCount, const size_t steps, const adios2::Params &engineParams) { adios2::ADIOS adios; @@ -175,8 +161,8 @@ void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, io.SetParameters(engineParams); adios2::Engine engine = io.Open("stream", adios2::Mode::Read); - size_t datasize = std::accumulate(memCount.begin(), memCount.end(), 1, - std::multiplies()); + size_t datasize = + std::accumulate(memCount.begin(), memCount.end(), 1, std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -208,21 +194,16 @@ void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, GenData(myDoubles, currentStep, memStart, memCount, shape); GenData(myComplexes, currentStep, memStart, memCount, shape); GenData(myDComplexes, currentStep, memStart, memCount, shape); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = @@ -264,17 +245,13 @@ void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, VerifyData(myChars.data(), currentStep, memStart, memCount, shape); VerifyData(myUChars.data(), currentStep, memStart, memCount, shape); VerifyData(myShorts.data(), currentStep, memStart, memCount, shape); - VerifyData(myUShorts.data(), currentStep, memStart, memCount, - shape); + VerifyData(myUShorts.data(), currentStep, memStart, memCount, shape); VerifyData(myInts.data(), currentStep, memStart, memCount, shape); VerifyData(myUInts.data(), currentStep, memStart, memCount, shape); VerifyData(myFloats.data(), currentStep, memStart, memCount, shape); - VerifyData(myDoubles.data(), currentStep, memStart, memCount, - shape); - VerifyData(myComplexes.data(), currentStep, memStart, memCount, - shape); - VerifyData(myDComplexes.data(), currentStep, memStart, memCount, - shape); + VerifyData(myDoubles.data(), currentStep, memStart, memCount, shape); + VerifyData(myComplexes.data(), currentStep, memStart, memCount, shape); + VerifyData(myDComplexes.data(), currentStep, memStart, memCount, shape); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) @@ -304,15 +281,13 @@ TEST_F(DataManEngineTest, 2D_Sz) Dims count = {10, 10}; size_t steps = 5000; - adios2::Params engineParams = { - {"IPAddress", "127.0.0.1"}, {"Port", "12330"}, {"Verbose", "0"}}; - - auto r = std::thread(DataManReaderP2PMemSelect, shape, start, count, start, - count, steps, engineParams); + adios2::Params engineParams = {{"IPAddress", "127.0.0.1"}, {"Port", "12330"}, {"Verbose", "0"}}; - auto w = std::thread(DataManWriterP2PMemSelect, shape, start, count, steps, + auto r = std::thread(DataManReaderP2PMemSelect, shape, start, count, start, count, steps, engineParams); + auto w = std::thread(DataManWriterP2PMemSelect, shape, start, count, steps, engineParams); + w.join(); r.join(); } diff --git a/testing/adios2/engine/dataman/TestDataMan2DZfp.cpp b/testing/adios2/engine/dataman/TestDataMan2DZfp.cpp index a5f0f13239..ad5bf96d47 100644 --- a/testing/adios2/engine/dataman/TestDataMan2DZfp.cpp +++ b/testing/adios2/engine/dataman/TestDataMan2DZfp.cpp @@ -24,11 +24,9 @@ class DataManEngineTest : public ::testing::Test }; template -void PrintData(const T *data, const size_t step, const Dims &start, - const Dims &count) +void PrintData(const T *data, const size_t step, const Dims &start, const Dims &count) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::cout << "Step: " << step << " Size:" << size << "\n"; size_t printsize = 128; @@ -52,8 +50,8 @@ void PrintData(const T *data, const size_t step, const Dims &start, } template -void GenData(std::vector &data, const size_t step, const Dims &start, - const Dims &count, const Dims &shape) +void GenData(std::vector &data, const size_t step, const Dims &start, const Dims &count, + const Dims &shape) { if (start.size() == 2) { @@ -61,19 +59,17 @@ void GenData(std::vector &data, const size_t step, const Dims &start, { for (size_t j = 0; j < count[1]; ++j) { - data[i * count[1] + j] = - (i + start[1]) * shape[1] + j + start[0] + 0.01; + data[i * count[1] + j] = (i + start[1]) * shape[1] + j + start[0] + 0.01; } } } } template -void VerifyData(const std::complex *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape) +void VerifyData(const std::complex *data, size_t step, const Dims &start, const Dims &count, + const Dims &shape) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::vector> tmpdata(size); GenData(tmpdata, step, start, count, shape); for (size_t i = 0; i < size; ++i) @@ -84,11 +80,9 @@ void VerifyData(const std::complex *data, size_t step, const Dims &start, } template -void VerifyData(const T *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape) +void VerifyData(const T *data, size_t step, const Dims &start, const Dims &count, const Dims &shape) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::vector tmpdata(size); GenData(tmpdata, step, start, count, shape); for (size_t i = 0; i < size; ++i) @@ -97,12 +91,10 @@ void VerifyData(const T *data, size_t step, const Dims &start, } } -void DataManWriterP2PMemSelect(const Dims &shape, const Dims &start, - const Dims &count, const size_t steps, - const adios2::Params &engineParams) +void DataManWriterP2PMemSelect(const Dims &shape, const Dims &start, const Dims &count, + const size_t steps, const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); adios2::ADIOS adios; adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("DataMan"); @@ -122,21 +114,16 @@ void DataManWriterP2PMemSelect(const Dims &shape, const Dims &start, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open("stream", adios2::Mode::Write); for (size_t i = 0; i < steps; ++i) @@ -167,9 +154,8 @@ void DataManWriterP2PMemSelect(const Dims &shape, const Dims &start, engine.Close(); } -void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, - const Dims &count, const Dims &memStart, - const Dims &memCount, const size_t steps, +void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, const Dims &count, + const Dims &memStart, const Dims &memCount, const size_t steps, const adios2::Params &engineParams) { adios2::ADIOS adios; @@ -178,8 +164,8 @@ void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, io.SetParameters(engineParams); adios2::Engine engine = io.Open("stream", adios2::Mode::Read); - size_t datasize = std::accumulate(memCount.begin(), memCount.end(), 1, - std::multiplies()); + size_t datasize = + std::accumulate(memCount.begin(), memCount.end(), 1, std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -211,21 +197,16 @@ void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, GenData(myDoubles, currentStep, memStart, memCount, shape); GenData(myComplexes, currentStep, memStart, memCount, shape); GenData(myDComplexes, currentStep, memStart, memCount, shape); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = @@ -267,17 +248,13 @@ void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, VerifyData(myChars.data(), currentStep, memStart, memCount, shape); VerifyData(myUChars.data(), currentStep, memStart, memCount, shape); VerifyData(myShorts.data(), currentStep, memStart, memCount, shape); - VerifyData(myUShorts.data(), currentStep, memStart, memCount, - shape); + VerifyData(myUShorts.data(), currentStep, memStart, memCount, shape); VerifyData(myInts.data(), currentStep, memStart, memCount, shape); VerifyData(myUInts.data(), currentStep, memStart, memCount, shape); VerifyData(myFloats.data(), currentStep, memStart, memCount, shape); - VerifyData(myDoubles.data(), currentStep, memStart, memCount, - shape); - VerifyData(myComplexes.data(), currentStep, memStart, memCount, - shape); - VerifyData(myDComplexes.data(), currentStep, memStart, memCount, - shape); + VerifyData(myDoubles.data(), currentStep, memStart, memCount, shape); + VerifyData(myComplexes.data(), currentStep, memStart, memCount, shape); + VerifyData(myDComplexes.data(), currentStep, memStart, memCount, shape); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) @@ -312,15 +289,13 @@ TEST_F(DataManEngineTest, 2D_Zfp) memcount = {7, 9}; size_t steps = 5000; - adios2::Params engineParams = { - {"IPAddress", "127.0.0.1"}, {"Port", "12340"}, {"Verbose", "0"}}; - - auto r = std::thread(DataManReaderP2PMemSelect, shape, start, count, - memstart, memcount, steps, engineParams); + adios2::Params engineParams = {{"IPAddress", "127.0.0.1"}, {"Port", "12340"}, {"Verbose", "0"}}; - auto w = std::thread(DataManWriterP2PMemSelect, shape, start, count, steps, + auto r = std::thread(DataManReaderP2PMemSelect, shape, start, count, memstart, memcount, steps, engineParams); + auto w = std::thread(DataManWriterP2PMemSelect, shape, start, count, steps, engineParams); + w.join(); r.join(); diff --git a/testing/adios2/engine/dataman/TestDataMan3DMemSelect.cpp b/testing/adios2/engine/dataman/TestDataMan3DMemSelect.cpp index 16fe402d57..2b8fdb85e9 100644 --- a/testing/adios2/engine/dataman/TestDataMan3DMemSelect.cpp +++ b/testing/adios2/engine/dataman/TestDataMan3DMemSelect.cpp @@ -17,17 +17,14 @@ using namespace adios2; size_t print_lines = 0; Dims shape = {4, 4, 4}; -std::vector global_data = {0, 1, 2, 3, 10, 11, 12, 13, - 20, 21, 22, 23, 30, 31, 32, 33, +std::vector global_data = { + 0, 1, 2, 3, 10, 11, 12, 13, 20, 21, 22, 23, 30, 31, 32, 33, - 100, 101, 102, 103, 110, 111, 112, 113, - 120, 121, 122, 123, 130, 131, 132, 133, + 100, 101, 102, 103, 110, 111, 112, 113, 120, 121, 122, 123, 130, 131, 132, 133, - 200, 201, 202, 203, 210, 211, 212, 213, - 220, 221, 222, 223, 230, 231, 232, 233, + 200, 201, 202, 203, 210, 211, 212, 213, 220, 221, 222, 223, 230, 231, 232, 233, - 300, 301, 302, 303, 310, 311, 312, 313, - 320, 321, 322, 323, 330, 331, 332, 333}; + 300, 301, 302, 303, 310, 311, 312, 313, 320, 321, 322, 323, 330, 331, 332, 333}; Dims start = {1, 2, 1}; Dims count = {2, 1, 2}; @@ -48,11 +45,9 @@ class DataManEngineTest : public ::testing::Test }; template -void PrintData(const T *data, const size_t step, const Dims &start, - const Dims &count) +void PrintData(const T *data, const size_t step, const Dims &start, const Dims &count) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::cout << "Step: " << step << " Size:" << size << "\n"; size_t printsize = 128; @@ -75,11 +70,10 @@ void PrintData(const T *data, const size_t step, const Dims &start, std::cout << "]" << std::endl; } -void VerifyData(const int *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape) +void VerifyData(const int *data, size_t step, const Dims &start, const Dims &count, + const Dims &shape) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); bool compressed = false; for (size_t i = 0; i < size; ++i) { @@ -90,9 +84,8 @@ void VerifyData(const int *data, size_t step, const Dims &start, } } -void DataManWriterP2PMemSelect(const Dims &shape, const Dims &start, - const Dims &count, const size_t steps, - const adios2::Params &engineParams) +void DataManWriterP2PMemSelect(const Dims &shape, const Dims &start, const Dims &count, + const size_t steps, const adios2::Params &engineParams) { adios2::ADIOS adios; adios2::IO io = adios.DeclareIO("WAN"); @@ -109,9 +102,8 @@ void DataManWriterP2PMemSelect(const Dims &shape, const Dims &start, engine.Close(); } -void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, - const Dims &count, const Dims &memStart, - const Dims &memCount, const size_t steps, +void DataManReaderP2PMemSelect(const Dims &shape, const Dims &start, const Dims &count, + const Dims &memStart, const Dims &memCount, const size_t steps, const adios2::Params &engineParams) { adios2::ADIOS adios; @@ -153,16 +145,14 @@ TEST_F(DataManEngineTest, 3D_MemSelect) { size_t steps = 3500; - adios2::Params engineParams = {{"IPAddress", "127.0.0.1"}, - {"Port", "12350"}}; + adios2::Params engineParams = {{"IPAddress", "127.0.0.1"}, {"Port", "12350"}}; // run workflow - auto r = std::thread(DataManReaderP2PMemSelect, shape, start, count, - memstart, memcount, steps, engineParams); - - auto w = std::thread(DataManWriterP2PMemSelect, shape, start, count, steps, + auto r = std::thread(DataManReaderP2PMemSelect, shape, start, count, memstart, memcount, steps, engineParams); + auto w = std::thread(DataManWriterP2PMemSelect, shape, start, count, steps, engineParams); + w.join(); r.join(); diff --git a/testing/adios2/engine/dataman/TestDataManReaderDoubleBuffer.cpp b/testing/adios2/engine/dataman/TestDataManReaderDoubleBuffer.cpp index 57d24e23a9..887b73d9d4 100644 --- a/testing/adios2/engine/dataman/TestDataManReaderDoubleBuffer.cpp +++ b/testing/adios2/engine/dataman/TestDataManReaderDoubleBuffer.cpp @@ -21,8 +21,7 @@ void GenData(std::vector> &data, const size_t step) { for (size_t i = 0; i < data.size(); ++i) { - data[i] = {static_cast(i + 10000 + step * 100), - static_cast(i + 10000)}; + data[i] = {static_cast(i + 10000 + step * 100), static_cast(i + 10000)}; } } @@ -79,11 +78,10 @@ void VerifyData(const std::vector &data, const size_t step) VerifyData(data.data(), data.size(), step); } -void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); adios2::ADIOS adios; adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("DataMan"); @@ -99,21 +97,16 @@ void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varUInt64s = io.DefineVariable("varUInt64s"); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open("stream", adios2::Mode::Write); @@ -146,11 +139,10 @@ void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void DataManReader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void DataManReader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); adios2::ADIOS adios; adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("DataMan"); @@ -178,27 +170,21 @@ void DataManReader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 11); currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varUInt64s = - io.InquireVariable("varUInt64s"); + adios2::Variable varUInt64s = io.InquireVariable("varUInt64s"); auto charsBlocksInfo = engine.AllStepsBlocksInfo(varChars); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -269,15 +255,11 @@ TEST_F(DataManEngineTest, ReaderDoubleBuffer) size_t steps = 5000; // run workflow - adios2::Params readerEngineParams = {{"IPAddress", "127.0.0.1"}, - {"Port", "12360"}, - {"DoubleBuffer", "true"}}; - auto r = std::thread(DataManReader, shape, start, count, steps, - readerEngineParams); - adios2::Params writerEngineParams = {{"IPAddress", "127.0.0.1"}, - {"Port", "12360"}}; - auto w = std::thread(DataManWriter, shape, start, count, steps, - writerEngineParams); + adios2::Params readerEngineParams = { + {"IPAddress", "127.0.0.1"}, {"Port", "12360"}, {"DoubleBuffer", "true"}}; + auto r = std::thread(DataManReader, shape, start, count, steps, readerEngineParams); + adios2::Params writerEngineParams = {{"IPAddress", "127.0.0.1"}, {"Port", "12360"}}; + auto w = std::thread(DataManWriter, shape, start, count, steps, writerEngineParams); w.join(); r.join(); } diff --git a/testing/adios2/engine/dataman/TestDataManReaderSingleBuffer.cpp b/testing/adios2/engine/dataman/TestDataManReaderSingleBuffer.cpp index f92c90a9e9..1bf6c647e8 100644 --- a/testing/adios2/engine/dataman/TestDataManReaderSingleBuffer.cpp +++ b/testing/adios2/engine/dataman/TestDataManReaderSingleBuffer.cpp @@ -21,8 +21,7 @@ void GenData(std::vector> &data, const size_t step) { for (size_t i = 0; i < data.size(); ++i) { - data[i] = {static_cast(i + 10000 + step * 100), - static_cast(i + 10000)}; + data[i] = {static_cast(i + 10000 + step * 100), static_cast(i + 10000)}; } } @@ -79,11 +78,10 @@ void VerifyData(const std::vector &data, const size_t step) VerifyData(data.data(), data.size(), step); } -void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); #if ADIOS2_USE_MPI adios2::ADIOS adios(MPI_COMM_SELF); #else @@ -103,21 +101,16 @@ void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varUInt64s = io.DefineVariable("varUInt64s"); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open("stream", adios2::Mode::Write); @@ -150,11 +143,10 @@ void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void DataManReader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void DataManReader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); #if ADIOS2_USE_MPI adios2::ADIOS adios(MPI_COMM_SELF); #else @@ -186,27 +178,21 @@ void DataManReader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 11); currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varUInt64s = - io.InquireVariable("varUInt64s"); + adios2::Variable varUInt64s = io.InquireVariable("varUInt64s"); auto charsBlocksInfo = engine.AllStepsBlocksInfo(varChars); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -277,15 +263,11 @@ TEST_F(DataManEngineTest, ReaderSingleBuffer) size_t steps = 5000; // run workflow - adios2::Params readerEngineParams = {{"IPAddress", "127.0.0.1"}, - {"Port", "12370"}, - {"DoubleBuffer", "false"}}; - auto r = std::thread(DataManReader, shape, start, count, steps, - readerEngineParams); - adios2::Params writerEngineParams = {{"IPAddress", "127.0.0.1"}, - {"Port", "12370"}}; - auto w = std::thread(DataManWriter, shape, start, count, steps, - writerEngineParams); + adios2::Params readerEngineParams = { + {"IPAddress", "127.0.0.1"}, {"Port", "12370"}, {"DoubleBuffer", "false"}}; + auto r = std::thread(DataManReader, shape, start, count, steps, readerEngineParams); + adios2::Params writerEngineParams = {{"IPAddress", "127.0.0.1"}, {"Port", "12370"}}; + auto w = std::thread(DataManWriter, shape, start, count, steps, writerEngineParams); w.join(); r.join(); } diff --git a/testing/adios2/engine/dataman/TestDataManReliable.cpp b/testing/adios2/engine/dataman/TestDataManReliable.cpp index 5c95d7c054..e2a047b9e0 100644 --- a/testing/adios2/engine/dataman/TestDataManReliable.cpp +++ b/testing/adios2/engine/dataman/TestDataManReliable.cpp @@ -21,8 +21,7 @@ void GenData(std::vector> &data, const size_t step) { for (size_t i = 0; i < data.size(); ++i) { - data[i] = {static_cast(i + 10000 + step * 100), - static_cast(i + 10000)}; + data[i] = {static_cast(i + 10000 + step * 100), static_cast(i + 10000)}; } } @@ -79,11 +78,10 @@ void VerifyData(const std::vector &data, const size_t step) VerifyData(data.data(), data.size(), step); } -void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); adios2::ADIOS adios; adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("DataMan"); @@ -99,21 +97,16 @@ void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varUInt64s = io.DefineVariable("varUInt64s"); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open("stream", adios2::Mode::Write); @@ -146,11 +139,10 @@ void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void DataManReader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void DataManReader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); adios2::ADIOS adios; adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("DataMan"); @@ -178,27 +170,21 @@ void DataManReader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 11); currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varUInt64s = - io.InquireVariable("varUInt64s"); + adios2::Variable varUInt64s = io.InquireVariable("varUInt64s"); auto charsBlocksInfo = engine.AllStepsBlocksInfo(varChars); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -269,16 +255,12 @@ TEST_F(DataManEngineTest, Reliable) size_t steps = 500; // run workflow - adios2::Params readerEngineParams = {{"IPAddress", "127.0.0.1"}, - {"Port", "12380"}, - {"TransportMode", "reliable"}}; - auto r = std::thread(DataManReader, shape, start, count, steps, - readerEngineParams); - adios2::Params writerEngineParams = {{"IPAddress", "127.0.0.1"}, - {"Port", "12380"}, - {"TransportMode", "reliable"}}; - auto w = std::thread(DataManWriter, shape, start, count, steps, - writerEngineParams); + adios2::Params readerEngineParams = { + {"IPAddress", "127.0.0.1"}, {"Port", "12380"}, {"TransportMode", "reliable"}}; + auto r = std::thread(DataManReader, shape, start, count, steps, readerEngineParams); + adios2::Params writerEngineParams = { + {"IPAddress", "127.0.0.1"}, {"Port", "12380"}, {"TransportMode", "reliable"}}; + auto w = std::thread(DataManWriter, shape, start, count, steps, writerEngineParams); w.join(); r.join(); } diff --git a/testing/adios2/engine/dataman/TestDataManWriterDoubleBuffer.cpp b/testing/adios2/engine/dataman/TestDataManWriterDoubleBuffer.cpp index 959ac41984..3b307235f0 100644 --- a/testing/adios2/engine/dataman/TestDataManWriterDoubleBuffer.cpp +++ b/testing/adios2/engine/dataman/TestDataManWriterDoubleBuffer.cpp @@ -26,8 +26,7 @@ void GenData(std::vector> &data, const size_t step) { for (size_t i = 0; i < data.size(); ++i) { - data[i] = {static_cast(i + 10000 + step * 100), - static_cast(i + 10000)}; + data[i] = {static_cast(i + 10000 + step * 100), static_cast(i + 10000)}; } } @@ -84,11 +83,10 @@ void VerifyData(const std::vector &data, const size_t step) VerifyData(data.data(), data.size(), step); } -void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); #if ADIOS2_USE_MPI adios2::ADIOS adios(MPI_COMM_SELF); #else @@ -108,21 +106,16 @@ void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varUInt64s = io.DefineVariable("varUInt64s"); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open("stream", adios2::Mode::Write); @@ -155,11 +148,10 @@ void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void DataManReader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void DataManReader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); #if ADIOS2_USE_MPI adios2::ADIOS adios(MPI_COMM_SELF); #else @@ -191,27 +183,21 @@ void DataManReader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 11); currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varUInt64s = - io.InquireVariable("varUInt64s"); + adios2::Variable varUInt64s = io.InquireVariable("varUInt64s"); auto charsBlocksInfo = engine.AllStepsBlocksInfo(varChars); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -281,15 +267,11 @@ TEST_F(DataManEngineTest, WriterDoubleBuffer) size_t steps = 5000; // run workflow - adios2::Params readerEngineParams = {{"IPAddress", "127.0.0.1"}, - {"Port", "12390"}}; - auto r = std::thread(DataManReader, shape, start, count, steps, - readerEngineParams); - adios2::Params writerEngineParams = {{"IPAddress", "127.0.0.1"}, - {"Port", "12390"}, - {"DoubleBuffer", "true"}}; - auto w = std::thread(DataManWriter, shape, start, count, steps, - writerEngineParams); + adios2::Params readerEngineParams = {{"IPAddress", "127.0.0.1"}, {"Port", "12390"}}; + auto r = std::thread(DataManReader, shape, start, count, steps, readerEngineParams); + adios2::Params writerEngineParams = { + {"IPAddress", "127.0.0.1"}, {"Port", "12390"}, {"DoubleBuffer", "true"}}; + auto w = std::thread(DataManWriter, shape, start, count, steps, writerEngineParams); w.join(); r.join(); } diff --git a/testing/adios2/engine/dataman/TestDataManWriterSingleBuffer.cpp b/testing/adios2/engine/dataman/TestDataManWriterSingleBuffer.cpp index ae07968538..0a702b2c22 100644 --- a/testing/adios2/engine/dataman/TestDataManWriterSingleBuffer.cpp +++ b/testing/adios2/engine/dataman/TestDataManWriterSingleBuffer.cpp @@ -82,11 +82,10 @@ void VerifyData(const std::vector &data, const size_t step) VerifyData(data.data(), data.size(), step); } -void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); adios2::ADIOS adios; adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("DataMan"); @@ -102,21 +101,16 @@ void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varUInt64s = io.DefineVariable("varUInt64s"); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open("stream", adios2::Mode::Write); @@ -149,11 +143,10 @@ void DataManWriter(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void DataManReader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void DataManReader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); adios2::ADIOS adios; adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("DataMan"); @@ -181,27 +174,21 @@ void DataManReader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 11); currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varUInt64s = - io.InquireVariable("varUInt64s"); + adios2::Variable varUInt64s = io.InquireVariable("varUInt64s"); auto charsBlocksInfo = engine.AllStepsBlocksInfo(varChars); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -272,15 +259,11 @@ TEST_F(DataManEngineTest, WriterSingleBuffer) size_t steps = 5000; // run workflow - adios2::Params readerEngineParams = {{"IPAddress", "127.0.0.1"}, - {"Port", "12400"}}; - auto r = std::thread(DataManReader, shape, start, count, steps, - readerEngineParams); - adios2::Params writerEngineParams = {{"IPAddress", "127.0.0.1"}, - {"Port", "12400"}, - {"DoubleBuffer", "false"}}; - auto w = std::thread(DataManWriter, shape, start, count, steps, - writerEngineParams); + adios2::Params readerEngineParams = {{"IPAddress", "127.0.0.1"}, {"Port", "12400"}}; + auto r = std::thread(DataManReader, shape, start, count, steps, readerEngineParams); + adios2::Params writerEngineParams = { + {"IPAddress", "127.0.0.1"}, {"Port", "12400"}, {"DoubleBuffer", "false"}}; + auto w = std::thread(DataManWriter, shape, start, count, steps, writerEngineParams); w.join(); r.join(); } diff --git a/testing/adios2/engine/hdf5/TestHDF5Append.cpp b/testing/adios2/engine/hdf5/TestHDF5Append.cpp index 1237dc7aa1..dfe3bbf5d9 100644 --- a/testing/adios2/engine/hdf5/TestHDF5Append.cpp +++ b/testing/adios2/engine/hdf5/TestHDF5Append.cpp @@ -69,30 +69,23 @@ TEST_F(AppendTimeStepTest, ADIOS2HDF5WriteAppendRead) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } diff --git a/testing/adios2/engine/hdf5/TestHDF5StreamWriteReadHighLevelAPI.cpp b/testing/adios2/engine/hdf5/TestHDF5StreamWriteReadHighLevelAPI.cpp index ce007a8c1d..bd1589e9b6 100644 --- a/testing/adios2/engine/hdf5/TestHDF5StreamWriteReadHighLevelAPI.cpp +++ b/testing/adios2/engine/hdf5/TestHDF5StreamWriteReadHighLevelAPI.cpp @@ -47,8 +47,7 @@ TEST_F(StreamWriteReadHighLevelAPI_HDF5, ADIOS2H5writeRead1D8) // write test data using H5 { #ifdef TEST_HDF5_MPI - adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, - "HDF5"); + adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, "HDF5"); #else adios2::fstream oStream(fname, adios2::fstream::out, "HDF5"); #endif @@ -74,12 +73,11 @@ TEST_F(StreamWriteReadHighLevelAPI_HDF5, ADIOS2H5writeRead1D8) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData stepData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData stepData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); oStream.write("iString", stepData.S1); - oStream.write("i8", stepData.I8.data(), shape, start, count, - adios2::end_step); + oStream.write("i8", stepData.I8.data(), shape, start, count, adios2::end_step); /* oStream.write("i16", stepData.I16.data(), shape, start, count); oStream.write("i32", stepData.I32.data(), shape, start, count); @@ -128,9 +126,7 @@ TEST_F(StreamWriteReadHighLevelAPI_HDF5, ADIOS2H5writeRead1D8) for (adios2::fstep iStep; adios2::getstep(iStream, iStep);) { - std::cout << "Step " << t - << ": currentstep() = " << iStep.current_step() - << std::endl; + std::cout << "Step " << t << ": currentstep() = " << iStep.current_step() << std::endl; if (iStep.current_step() == 0) { iStep.read("gi8", gi8); @@ -208,8 +204,8 @@ TEST_F(StreamWriteReadHighLevelAPI_HDF5, ADIOS2H5writeRead1D8) auto R64 = iStep.read("r64", start, count); */ - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString.front(), currentTestData.S1); @@ -280,8 +276,7 @@ TEST_F(StreamWriteReadHighLevelAPI_HDF5, ADIOS2H5writeRead2D2x4) // write test data using ADIOS2 { #ifdef TEST_HDF5_MPI - adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, - "HDF5"); + adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, "HDF5"); #else adios2::fstream oStream(fname, adios2::fstream::out, "HDF5"); #endif @@ -293,8 +288,8 @@ TEST_F(StreamWriteReadHighLevelAPI_HDF5, ADIOS2H5writeRead2D2x4) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData stepData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData stepData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); oStream.write("iString", stepData.S1); oStream.write("i8", stepData.I8.data(), shape, start, count); @@ -306,8 +301,7 @@ TEST_F(StreamWriteReadHighLevelAPI_HDF5, ADIOS2H5writeRead2D2x4) oStream.write("u32", stepData.U32.data(), shape, start, count); oStream.write("u64", stepData.U64.data(), shape, start, count); oStream.write("r32", stepData.R32.data(), shape, start, count); - oStream.write("r64", stepData.R64.data(), shape, start, count, - adios2::endl); + oStream.write("r64", stepData.R64.data(), shape, start, count, adios2::endl); } // Close the file @@ -317,8 +311,7 @@ TEST_F(StreamWriteReadHighLevelAPI_HDF5, ADIOS2H5writeRead2D2x4) // READ { #ifdef TEST_HDF5_MPI - adios2::fstream iStream(fname, adios2::fstream::in, MPI_COMM_WORLD, - "HDF5"); + adios2::fstream iStream(fname, adios2::fstream::in, MPI_COMM_WORLD, "HDF5"); #else adios2::fstream iStream(fname, adios2::fstream::in, "HDF5"); #endif @@ -344,8 +337,8 @@ TEST_F(StreamWriteReadHighLevelAPI_HDF5, ADIOS2H5writeRead2D2x4) auto R64 = iStep.read("r64", start, count); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString.front(), currentTestData.S1); @@ -399,8 +392,7 @@ TEST_F(StreamWriteReadHighLevelAPI_HDF5, ADIOS2H5writeRead2D4x2) // write test data using ADIOS2 { #ifdef TEST_HDF5_MPI - adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, - "HDF5"); + adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, "HDF5"); #else adios2::fstream oStream(fname, adios2::fstream::out, "HDF5"); #endif @@ -415,8 +407,8 @@ TEST_F(StreamWriteReadHighLevelAPI_HDF5, ADIOS2H5writeRead2D4x2) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData stepData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData stepData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); oStream.write("iString", stepData.S1); oStream.write("i8", stepData.I8.data(), shape, start, count); @@ -428,8 +420,7 @@ TEST_F(StreamWriteReadHighLevelAPI_HDF5, ADIOS2H5writeRead2D4x2) oStream.write("u32", stepData.U32.data(), shape, start, count); oStream.write("u64", stepData.U64.data(), shape, start, count); oStream.write("r32", stepData.R32.data(), shape, start, count); - oStream.write("r64", stepData.R64.data(), shape, start, count, - adios2::endl); + oStream.write("r64", stepData.R64.data(), shape, start, count, adios2::endl); } EXPECT_THROW(oStream.write("i8", 1), std::invalid_argument); @@ -438,8 +429,7 @@ TEST_F(StreamWriteReadHighLevelAPI_HDF5, ADIOS2H5writeRead2D4x2) { #ifdef TEST_HDF5_MPI - adios2::fstream iStream(fname, adios2::fstream::in, MPI_COMM_WORLD, - "HDF5"); + adios2::fstream iStream(fname, adios2::fstream::in, MPI_COMM_WORLD, "HDF5"); #else adios2::fstream iStream(fname, adios2::fstream::in, "HDF5"); #endif @@ -466,8 +456,8 @@ TEST_F(StreamWriteReadHighLevelAPI_HDF5, ADIOS2H5writeRead2D4x2) auto R64 = iStep.read("r64", start, count); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString.front(), currentTestData.S1); @@ -502,15 +492,12 @@ TEST_F(StreamWriteReadHighLevelAPI_HDF5, DoubleOpenException) { #ifdef TEST_HDF5_MPI - adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, - "HDF5"); - EXPECT_THROW(oStream.open("second", adios2::fstream::out, - MPI_COMM_WORLD, "HDF5"), + adios2::fstream oStream(fname, adios2::fstream::out, MPI_COMM_WORLD, "HDF5"); + EXPECT_THROW(oStream.open("second", adios2::fstream::out, MPI_COMM_WORLD, "HDF5"), std::invalid_argument); #else adios2::fstream oStream(fname, adios2::fstream::out, "HDF5"); - EXPECT_THROW(oStream.open("second", adios2::fstream::out, "HDF5"), - std::invalid_argument); + EXPECT_THROW(oStream.open("second", adios2::fstream::out, "HDF5"), std::invalid_argument); #endif } } diff --git a/testing/adios2/engine/hdf5/TestHDF5WriteMemorySelectionRead.cpp b/testing/adios2/engine/hdf5/TestHDF5WriteMemorySelectionRead.cpp index 95d2b8127d..ca8397bca6 100644 --- a/testing/adios2/engine/hdf5/TestHDF5WriteMemorySelectionRead.cpp +++ b/testing/adios2/engine/hdf5/TestHDF5WriteMemorySelectionRead.cpp @@ -20,8 +20,7 @@ namespace { template -inline void AssignStep1D(const size_t step, std::vector &vector, - const size_t ghostCells = 0) +inline void AssignStep1D(const size_t step, std::vector &vector, const size_t ghostCells = 0) { std::for_each(vector.begin() + ghostCells, vector.end() - ghostCells, [step](T &value) { value = static_cast(step); }); @@ -31,17 +30,15 @@ template void AssignStep1D(const size_t step, std::vector> &vector, const size_t ghostCells) { - std::for_each(vector.begin() + ghostCells, vector.end() - ghostCells, - [step](std::complex &value) { - value = std::complex(static_cast(step), - static_cast(step)); - }); + std::for_each( + vector.begin() + ghostCells, vector.end() - ghostCells, [step](std::complex &value) { + value = std::complex(static_cast(step), static_cast(step)); + }); } template -inline void AssignStep2D(const size_t step, std::vector &vector, - const size_t Nx, const size_t Ny, - const size_t ghostCellsX, const size_t ghostCellsY) +inline void AssignStep2D(const size_t step, std::vector &vector, const size_t Nx, + const size_t Ny, const size_t ghostCellsX, const size_t ghostCellsY) { for (size_t j = ghostCellsY; j < Ny + ghostCellsY; ++j) { @@ -56,9 +53,8 @@ inline void AssignStep2D(const size_t step, std::vector &vector, } template -void AssignStep2D(const size_t step, std::vector> &vector, - const size_t Nx, const size_t Ny, const size_t ghostCellsX, - const size_t ghostCellsY) +void AssignStep2D(const size_t step, std::vector> &vector, const size_t Nx, + const size_t Ny, const size_t ghostCellsX, const size_t ghostCellsY) { for (size_t j = ghostCellsY; j < Ny + ghostCellsY; ++j) { @@ -67,22 +63,19 @@ void AssignStep2D(const size_t step, std::vector> &vector, for (size_t i = ghostCellsX; i < Nx + ghostCellsX; ++i) { const size_t index = indexJ + i; - vector[index] = std::complex(static_cast(step), - static_cast(step)); + vector[index] = std::complex(static_cast(step), static_cast(step)); } } } template -inline void AssignStep3D(const size_t step, std::vector &vector, - const size_t Nx, const size_t Ny, const size_t Nz, - const size_t ghostCellsX, const size_t ghostCellsY, - const size_t ghostCellsZ) +inline void AssignStep3D(const size_t step, std::vector &vector, const size_t Nx, + const size_t Ny, const size_t Nz, const size_t ghostCellsX, + const size_t ghostCellsY, const size_t ghostCellsZ) { for (size_t k = ghostCellsZ; k < Nz + ghostCellsZ; ++k) { - const size_t indexK = - k * (Ny + 2 * ghostCellsY) * (Nx + 2 * ghostCellsX); + const size_t indexK = k * (Ny + 2 * ghostCellsY) * (Nx + 2 * ghostCellsX); for (size_t j = ghostCellsY; j < Ny + ghostCellsY; ++j) { @@ -98,15 +91,13 @@ inline void AssignStep3D(const size_t step, std::vector &vector, } template -void AssignStep3D(const size_t step, std::vector> &vector, - const size_t Nx, const size_t Ny, const size_t Nz, - const size_t ghostCellsX, const size_t ghostCellsY, - const size_t ghostCellsZ) +void AssignStep3D(const size_t step, std::vector> &vector, const size_t Nx, + const size_t Ny, const size_t Nz, const size_t ghostCellsX, + const size_t ghostCellsY, const size_t ghostCellsZ) { for (size_t k = ghostCellsZ; k < Nz + ghostCellsZ; ++k) { - const size_t indexK = - k * (Ny + 2 * ghostCellsY) * (Nx + 2 * ghostCellsX); + const size_t indexK = k * (Ny + 2 * ghostCellsY) * (Nx + 2 * ghostCellsX); for (size_t j = ghostCellsY; j < Ny + ghostCellsY; ++j) { @@ -115,8 +106,8 @@ void AssignStep3D(const size_t step, std::vector> &vector, for (size_t i = ghostCellsX; i < Nx + ghostCellsX; ++i) { const size_t index = indexK + indexJ + i; - vector[index] = std::complex(static_cast(step), - static_cast(step)); + vector[index] = + std::complex(static_cast(step), static_cast(step)); } } } @@ -126,8 +117,7 @@ void AssignStep3D(const size_t step, std::vector> &vector, void HDF5Steps1D(const size_t ghostCells) { - const std::string fname("HDF5Steps1D_" + std::to_string(ghostCells) + - ".h5"); + const std::string fname("HDF5Steps1D_" + std::to_string(ghostCells) + ".h5"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -164,10 +154,8 @@ void HDF5Steps1D(const size_t ghostCells) auto var_i64 = io.DefineVariable("i64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); auto var_r64 = io.DefineVariable("r64", shape, start, count); - auto var_cr32 = - io.DefineVariable>("cr32", shape, start, count); - auto var_cr64 = io.DefineVariable>("cr64", shape, - start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); const adios2::Dims memoryStart = {ghostCells}; const adios2::Dims memoryCount = {Nx + 2 * ghostCells}; @@ -187,10 +175,8 @@ void HDF5Steps1D(const size_t ghostCells) std::vector dataI64(Nx + 2 * ghostCells, -1); std::vector dataR32(Nx + 2 * ghostCells, -1.f); std::vector dataR64(Nx + 2 * ghostCells, -1.); - std::vector> dataCR32(Nx + 2 * ghostCells, - {-1.f, -1.f}); - std::vector> dataCR64(Nx + 2 * ghostCells, - {-1., -1.}); + std::vector> dataCR32(Nx + 2 * ghostCells, {-1.f, -1.f}); + std::vector> dataCR64(Nx + 2 * ghostCells, {-1., -1.}); adios2::Engine h5Writer = io.Open(fname, adios2::Mode::Write); @@ -318,38 +304,28 @@ void HDF5Steps1D(const size_t ghostCells) EXPECT_EQ(R32.front(), static_cast(step)); EXPECT_EQ(R64.front(), static_cast(step)); EXPECT_EQ(CR32.front(), - std::complex(static_cast(step), - static_cast(step))); + std::complex(static_cast(step), static_cast(step))); EXPECT_EQ(CR64.front(), - std::complex(static_cast(step), - static_cast(step))); + std::complex(static_cast(step), static_cast(step))); - EXPECT_EQ(std::adjacent_find(I8.begin(), I8.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I8.begin(), I8.end(), std::not_equal_to()), I8.end()); - EXPECT_EQ(std::adjacent_find(I16.begin(), I16.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I16.begin(), I16.end(), std::not_equal_to()), I16.end()); - EXPECT_EQ(std::adjacent_find(I32.begin(), I32.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I32.begin(), I32.end(), std::not_equal_to()), I32.end()); - EXPECT_EQ(std::adjacent_find(I64.begin(), I64.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I64.begin(), I64.end(), std::not_equal_to()), I64.end()); - EXPECT_EQ(std::adjacent_find(R32.begin(), R32.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(R32.begin(), R32.end(), std::not_equal_to()), R32.end()); - EXPECT_EQ(std::adjacent_find(R64.begin(), R64.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(R64.begin(), R64.end(), std::not_equal_to()), R64.end()); - EXPECT_EQ( - std::adjacent_find(CR32.begin(), CR32.end(), - std::not_equal_to>()), - CR32.end()); - EXPECT_EQ( - std::adjacent_find(CR64.begin(), CR64.end(), - std::not_equal_to>()), - CR64.end()); + EXPECT_EQ(std::adjacent_find(CR32.begin(), CR32.end(), + std::not_equal_to>()), + CR32.end()); + EXPECT_EQ(std::adjacent_find(CR64.begin(), CR64.end(), + std::not_equal_to>()), + CR64.end()); } h5Reader.Close(); @@ -358,8 +334,7 @@ void HDF5Steps1D(const size_t ghostCells) void HDF5Steps2D4x2(const size_t ghostCells) { - const std::string fname("HDF5Steps2D4x2_" + std::to_string(ghostCells) + - ".h5"); + const std::string fname("HDF5Steps2D4x2_" + std::to_string(ghostCells) + ".h5"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -400,14 +375,11 @@ void HDF5Steps2D4x2(const size_t ghostCells) auto var_i64 = io.DefineVariable("i64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); auto var_r64 = io.DefineVariable("r64", shape, start, count); - auto var_cr32 = - io.DefineVariable>("cr32", shape, start, count); - auto var_cr64 = io.DefineVariable>("cr64", shape, - start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); const adios2::Dims memoryStart = {ghostCellsY, ghostCellsX}; - const adios2::Dims memoryCount = {Ny + 2 * ghostCellsY, - Nx + 2 * ghostCellsX}; + const adios2::Dims memoryCount = {Ny + 2 * ghostCellsY, Nx + 2 * ghostCellsX}; var_i8.SetMemorySelection({memoryStart, memoryCount}); var_i16.SetMemorySelection({memoryStart, memoryCount}); @@ -564,38 +536,28 @@ void HDF5Steps2D4x2(const size_t ghostCells) EXPECT_EQ(R32.front(), static_cast(step)); EXPECT_EQ(R64.front(), static_cast(step)); EXPECT_EQ(CR32.front(), - std::complex(static_cast(step), - static_cast(step))); + std::complex(static_cast(step), static_cast(step))); EXPECT_EQ(CR64.front(), - std::complex(static_cast(step), - static_cast(step))); + std::complex(static_cast(step), static_cast(step))); - EXPECT_EQ(std::adjacent_find(I8.begin(), I8.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I8.begin(), I8.end(), std::not_equal_to()), I8.end()); - EXPECT_EQ(std::adjacent_find(I16.begin(), I16.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I16.begin(), I16.end(), std::not_equal_to()), I16.end()); - EXPECT_EQ(std::adjacent_find(I32.begin(), I32.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I32.begin(), I32.end(), std::not_equal_to()), I32.end()); - EXPECT_EQ(std::adjacent_find(I64.begin(), I64.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I64.begin(), I64.end(), std::not_equal_to()), I64.end()); - EXPECT_EQ(std::adjacent_find(R32.begin(), R32.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(R32.begin(), R32.end(), std::not_equal_to()), R32.end()); - EXPECT_EQ(std::adjacent_find(R64.begin(), R64.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(R64.begin(), R64.end(), std::not_equal_to()), R64.end()); - EXPECT_EQ( - std::adjacent_find(CR32.begin(), CR32.end(), - std::not_equal_to>()), - CR32.end()); - EXPECT_EQ( - std::adjacent_find(CR64.begin(), CR64.end(), - std::not_equal_to>()), - CR64.end()); + EXPECT_EQ(std::adjacent_find(CR32.begin(), CR32.end(), + std::not_equal_to>()), + CR32.end()); + EXPECT_EQ(std::adjacent_find(CR64.begin(), CR64.end(), + std::not_equal_to>()), + CR64.end()); } h5Reader.Close(); @@ -604,8 +566,7 @@ void HDF5Steps2D4x2(const size_t ghostCells) void HDF5Steps3D8x2x4(const size_t ghostCells) { - const std::string fname("HDF5Steps3D8x2x4_" + std::to_string(ghostCells) + - ".h5"); + const std::string fname("HDF5Steps3D8x2x4_" + std::to_string(ghostCells) + ".h5"); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -648,15 +609,12 @@ void HDF5Steps3D8x2x4(const size_t ghostCells) auto var_i64 = io.DefineVariable("i64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); auto var_r64 = io.DefineVariable("r64", shape, start, count); - auto var_cr32 = - io.DefineVariable>("cr32", shape, start, count); - auto var_cr64 = io.DefineVariable>("cr64", shape, - start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); - const adios2::Dims memoryStart = {ghostCellsZ, ghostCellsY, - ghostCellsX}; - const adios2::Dims memoryCount = { - Nz + 2 * ghostCellsZ, Ny + 2 * ghostCellsY, Nx + 2 * ghostCellsX}; + const adios2::Dims memoryStart = {ghostCellsZ, ghostCellsY, ghostCellsX}; + const adios2::Dims memoryCount = {Nz + 2 * ghostCellsZ, Ny + 2 * ghostCellsY, + Nx + 2 * ghostCellsX}; var_i8.SetMemorySelection({memoryStart, memoryCount}); var_i16.SetMemorySelection({memoryStart, memoryCount}); @@ -667,8 +625,8 @@ void HDF5Steps3D8x2x4(const size_t ghostCells) var_cr32.SetMemorySelection({memoryStart, memoryCount}); var_cr64.SetMemorySelection({memoryStart, memoryCount}); - const size_t dataSize = (Nz + 2 * ghostCellsZ) * - (Ny + 2 * ghostCellsY) * (Nx + 2 * ghostCellsX); + const size_t dataSize = + (Nz + 2 * ghostCellsZ) * (Ny + 2 * ghostCellsY) * (Nx + 2 * ghostCellsX); std::vector dataI8(dataSize, -1); std::vector dataI16(dataSize, -1); std::vector dataI32(dataSize, -1); @@ -682,22 +640,14 @@ void HDF5Steps3D8x2x4(const size_t ghostCells) for (size_t i = 0; i < NSteps; ++i) { - AssignStep3D(i, dataI8, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); - AssignStep3D(i, dataI16, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); - AssignStep3D(i, dataI32, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); - AssignStep3D(i, dataI64, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); - AssignStep3D(i, dataR32, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); - AssignStep3D(i, dataR64, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); - AssignStep3D(i, dataCR32, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); - AssignStep3D(i, dataCR64, Nx, Ny, Nz, ghostCellsX, ghostCellsY, - ghostCellsZ); + AssignStep3D(i, dataI8, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); + AssignStep3D(i, dataI16, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); + AssignStep3D(i, dataI32, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); + AssignStep3D(i, dataI64, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); + AssignStep3D(i, dataR32, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); + AssignStep3D(i, dataR64, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); + AssignStep3D(i, dataCR32, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); + AssignStep3D(i, dataCR64, Nx, Ny, Nz, ghostCellsX, ghostCellsY, ghostCellsZ); h5Writer.BeginStep(); h5Writer.Put(var_i8, dataI8.data()); @@ -838,13 +788,11 @@ void HDF5Steps3D8x2x4(const size_t ghostCells) EXPECT_EQ(R64.front(), static_cast(currentStep)); - EXPECT_EQ(CR32.front(), - std::complex(static_cast(currentStep), - static_cast(currentStep))); + EXPECT_EQ(CR32.front(), std::complex(static_cast(currentStep), + static_cast(currentStep))); - EXPECT_EQ(CR64.front(), - std::complex(static_cast(currentStep), - static_cast(currentStep))); + EXPECT_EQ(CR64.front(), std::complex(static_cast(currentStep), + static_cast(currentStep))); const size_t dataSize = mpiSize * Nz * Ny * Nx; EXPECT_EQ(I8.size(), dataSize); @@ -863,38 +811,28 @@ void HDF5Steps3D8x2x4(const size_t ghostCells) EXPECT_EQ(R32.front(), static_cast(step)); EXPECT_EQ(R64.front(), static_cast(step)); EXPECT_EQ(CR32.front(), - std::complex(static_cast(step), - static_cast(step))); + std::complex(static_cast(step), static_cast(step))); EXPECT_EQ(CR64.front(), - std::complex(static_cast(step), - static_cast(step))); + std::complex(static_cast(step), static_cast(step))); - EXPECT_EQ(std::adjacent_find(I8.begin(), I8.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I8.begin(), I8.end(), std::not_equal_to()), I8.end()); - EXPECT_EQ(std::adjacent_find(I16.begin(), I16.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I16.begin(), I16.end(), std::not_equal_to()), I16.end()); - EXPECT_EQ(std::adjacent_find(I32.begin(), I32.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I32.begin(), I32.end(), std::not_equal_to()), I32.end()); - EXPECT_EQ(std::adjacent_find(I64.begin(), I64.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(I64.begin(), I64.end(), std::not_equal_to()), I64.end()); - EXPECT_EQ(std::adjacent_find(R32.begin(), R32.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(R32.begin(), R32.end(), std::not_equal_to()), R32.end()); - EXPECT_EQ(std::adjacent_find(R64.begin(), R64.end(), - std::not_equal_to()), + EXPECT_EQ(std::adjacent_find(R64.begin(), R64.end(), std::not_equal_to()), R64.end()); - EXPECT_EQ( - std::adjacent_find(CR32.begin(), CR32.end(), - std::not_equal_to>()), - CR32.end()); - EXPECT_EQ( - std::adjacent_find(CR64.begin(), CR64.end(), - std::not_equal_to>()), - CR64.end()); + EXPECT_EQ(std::adjacent_find(CR32.begin(), CR32.end(), + std::not_equal_to>()), + CR32.end()); + EXPECT_EQ(std::adjacent_find(CR64.begin(), CR64.end(), + std::not_equal_to>()), + CR64.end()); } h5Reader.Close(); @@ -909,23 +847,13 @@ class HDF5WriteMemSelReadVector : public ::testing::TestWithParam virtual void TearDown() {} }; -TEST_P(HDF5WriteMemSelReadVector, HDF5MemorySelectionSteps1D) -{ - HDF5Steps1D(GetParam()); -} +TEST_P(HDF5WriteMemSelReadVector, HDF5MemorySelectionSteps1D) { HDF5Steps1D(GetParam()); } -TEST_P(HDF5WriteMemSelReadVector, HDF5MemorySelectionSteps2D4x2) -{ - HDF5Steps2D4x2(GetParam()); -} +TEST_P(HDF5WriteMemSelReadVector, HDF5MemorySelectionSteps2D4x2) { HDF5Steps2D4x2(GetParam()); } -TEST_P(HDF5WriteMemSelReadVector, HDF5MemorySelectionSteps3D4x2x8) -{ - HDF5Steps3D8x2x4(GetParam()); -} +TEST_P(HDF5WriteMemSelReadVector, HDF5MemorySelectionSteps3D4x2x8) { HDF5Steps3D8x2x4(GetParam()); } -INSTANTIATE_TEST_SUITE_P(ghostCells, HDF5WriteMemSelReadVector, - ::testing::Values(1)); +INSTANTIATE_TEST_SUITE_P(ghostCells, HDF5WriteMemSelReadVector, ::testing::Values(1)); int main(int argc, char **argv) { diff --git a/testing/adios2/engine/hdf5/TestHDF5WriteReadAsStream.cpp b/testing/adios2/engine/hdf5/TestHDF5WriteReadAsStream.cpp index 846869a38d..57b30e32b8 100644 --- a/testing/adios2/engine/hdf5/TestHDF5WriteReadAsStream.cpp +++ b/testing/adios2/engine/hdf5/TestHDF5WriteReadAsStream.cpp @@ -62,31 +62,21 @@ TEST_F(HDF5WriteReadAsStreamTestADIOS2, ADIOS2HDF5WriteRead1D8) io.DefineVariable("iString"); io.DefineVariable("ch", shape, start, count); - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); io.DefineVariable>("cr32", shape, start, count, adios2::ConstantDims); @@ -98,8 +88,8 @@ TEST_F(HDF5WriteReadAsStreamTestADIOS2, ADIOS2HDF5WriteRead1D8) for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // EXPECT_EQ(h5Writer.CurrentStep(), step); @@ -132,10 +122,8 @@ TEST_F(HDF5WriteReadAsStreamTestADIOS2, ADIOS2HDF5WriteRead1D8) } h5Writer.Put("ch", currentTestData.CHAR.data()); - h5Writer.Put>("cr32", - currentTestData.CR32.data()); - h5Writer.Put>("cr64", - currentTestData.CR64.data()); + h5Writer.Put>("cr32", currentTestData.CR32.data()); + h5Writer.Put>("cr64", currentTestData.CR64.data()); h5Writer.EndStep(); } @@ -224,18 +212,15 @@ TEST_F(HDF5WriteReadAsStreamTestADIOS2, ADIOS2HDF5WriteRead1D8) ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_i16.Steps(), NSteps / 2 + NSteps % 2); - ASSERT_EQ(var_i16.Shape()[0], - static_cast(mpiSize * Nx)); + ASSERT_EQ(var_i16.Shape()[0], static_cast(mpiSize * Nx)); ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_i32.Steps(), NSteps / 2 + NSteps % 2); - ASSERT_EQ(var_i32.Shape()[0], - static_cast(mpiSize * Nx)); + ASSERT_EQ(var_i32.Shape()[0], static_cast(mpiSize * Nx)); ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_i64.Steps(), NSteps / 2 + NSteps % 2); - ASSERT_EQ(var_i64.Shape()[0], - static_cast(mpiSize * Nx)); + ASSERT_EQ(var_i64.Shape()[0], static_cast(mpiSize * Nx)); var_i8.SetSelection(sel); var_i16.SetSelection(sel); @@ -386,9 +371,7 @@ TEST_F(HDF5WriteReadAsStreamTestADIOS2, ADIOS2HDF5WriteRead1D8) if (var_ch) { - EXPECT_EQ(static_cast(CHAR[i]), - currentTestData.CHAR[i]) - << msg; + EXPECT_EQ(static_cast(CHAR[i]), currentTestData.CHAR[i]) << msg; } if (var_cr32) { @@ -450,37 +433,27 @@ TEST_F(HDF5WriteReadAsStreamTestADIOS2, ADIOS2HDF5WriteRead2D2x4) const adios2::Dims start{0, static_cast(mpiRank * Nx)}; const adios2::Dims count{Ny, Nx}; - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } adios2::Engine h5Writer = io.Open(fname, adios2::Mode::Write); for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // EXPECT_EQ(h5Writer.CurrentStep(), step); @@ -696,40 +669,29 @@ TEST_F(HDF5WriteReadAsStreamTestADIOS2, ADIOS2HDF5WriteRead2D4x2) static_cast(mpiSize * Nx)}; adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; - - io.DefineVariable("i8", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("i64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u8", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("u16", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("u64", shape, start, count, - adios2::ConstantDims); - - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); - io.DefineVariable("r64", shape, start, count, - adios2::ConstantDims); + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; + + io.DefineVariable("i8", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("i64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u8", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("u16", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("u64", shape, start, count, adios2::ConstantDims); + + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); } adios2::Engine h5Writer = io.Open(fname, adios2::Mode::Write); for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // EXPECT_EQ(h5Writer.CurrentStep(), step); @@ -945,15 +907,14 @@ TEST_F(HDF5WriteReadAsStreamTestADIOS2, ReaderWriterDefineVariable) adios2::IO io = adios.DeclareIO("Writer"); io.SetEngine("HDF5"); - io.DefineVariable("r32", shape, start, count, - adios2::ConstantDims); + io.DefineVariable("r32", shape, start, count, adios2::ConstantDims); adios2::Engine h5Writer = io.Open(fnameFloat, adios2::Mode::Write); for (size_t step = 0; step < NSteps; ++step) { - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); h5Writer.BeginStep(); h5Writer.Put("r32", currentTestData.R32.data()); h5Writer.EndStep(); @@ -979,12 +940,12 @@ TEST_F(HDF5WriteReadAsStreamTestADIOS2, ReaderWriterDefineVariable) if (step == 0) { - adios2::Variable varR64 = io.DefineVariable( - "r64", shape, start, count, adios2::ConstantDims); + adios2::Variable varR64 = + io.DefineVariable("r64", shape, start, count, adios2::ConstantDims); EXPECT_TRUE(varR64); } - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); writer.BeginStep(); writer.Put("r32", currentTestData.R32.data()); writer.Put("r64", currentTestData.R64.data()); diff --git a/testing/adios2/engine/hdf5/TestHDF5WriteReadAttributesADIOS2.cpp b/testing/adios2/engine/hdf5/TestHDF5WriteReadAttributesADIOS2.cpp index 02cf2dcd6e..ac746724d4 100644 --- a/testing/adios2/engine/hdf5/TestHDF5WriteReadAttributesADIOS2.cpp +++ b/testing/adios2/engine/hdf5/TestHDF5WriteReadAttributesADIOS2.cpp @@ -25,8 +25,8 @@ class BPWriteReadAttributeTestADIOS2 : public ::testing::Test // ADIOS2 write, read for single value attributes TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadSingleTypes) { - const std::string fName = "." + std::string(&adios2::PathSeparator, 1) + - "ADIOS2BPWriteAttributeReadSingleTypes.h5"; + const std::string fName = + "." + std::string(&adios2::PathSeparator, 1) + "ADIOS2BPWriteAttributeReadSingleTypes.h5"; const std::string zero = std::to_string(0); const std::string s1_Single = std::string("s1_Single_") + zero; @@ -45,8 +45,7 @@ TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadSingleTypes) // When collective meta generation has landed, use // generateNewSmallTestData(m_TestData, 0, mpiRank, mpiSize); // Generate current testing data - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, 0, 0, 0); + SmallTestData currentTestData = generateNewSmallTestData(m_TestData, 0, 0, 0); // Write test data using BP #ifdef TEST_HDF5_MPI @@ -60,8 +59,7 @@ TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadSingleTypes) // Declare Single Value Attributes io.DefineAttribute(s1_Single, currentTestData.S1); - io.DefineAttribute(s1_Array, - currentTestData.S1array.data(), + io.DefineAttribute(s1_Array, currentTestData.S1array.data(), currentTestData.S1array.size()); io.DefineAttribute(i8_Single, currentTestData.I8.front()); @@ -187,8 +185,8 @@ TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadSingleTypes) // ADIOS2 write read for array attributes TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadArrayTypes) { - const std::string fName = "." + std::string(&adios2::PathSeparator, 1) + - "ADIOS2BPWriteAttributeReadArrayTypes.h5"; + const std::string fName = + "." + std::string(&adios2::PathSeparator, 1) + "ADIOS2BPWriteAttributeReadArrayTypes.h5"; #ifdef TEST_HDF5_MPI int mpiRank = 0, mpiSize = 1; @@ -212,8 +210,7 @@ TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadArrayTypes) // When collective meta generation has landed, use // generateNewSmallTestData(m_TestData, 0, mpiRank, mpiSize); // Generate current testing data - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, 0, 0, 0); + SmallTestData currentTestData = generateNewSmallTestData(m_TestData, 0, 0, 0); // Write test data using BP #ifdef TEST_HDF5_MPI @@ -229,8 +226,7 @@ TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadArrayTypes) io.DefineAttribute(s1_Array, currentTestData.S3.data(), currentTestData.S3.size()); - io.DefineAttribute(i8_Array, currentTestData.I8.data(), - currentTestData.I8.size()); + io.DefineAttribute(i8_Array, currentTestData.I8.data(), currentTestData.I8.size()); io.DefineAttribute(i16_Array, currentTestData.I16.data(), currentTestData.I16.size()); io.DefineAttribute(i32_Array, currentTestData.I32.data(), @@ -238,8 +234,7 @@ TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadArrayTypes) io.DefineAttribute(i64_Array, currentTestData.I64.data(), currentTestData.I64.size()); - io.DefineAttribute(u8_Array, currentTestData.U8.data(), - currentTestData.U8.size()); + io.DefineAttribute(u8_Array, currentTestData.U8.data(), currentTestData.U8.size()); io.DefineAttribute(u16_Array, currentTestData.U16.data(), currentTestData.U16.size()); io.DefineAttribute(u32_Array, currentTestData.U32.data(), @@ -366,8 +361,8 @@ TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadArrayTypes) TEST_F(BPWriteReadAttributeTestADIOS2, BPWriteReadSingleTypesVar) { - const std::string fName = "." + std::string(&adios2::PathSeparator, 1) + - "BPWriteAttributeReadSingleTypesVar.h5"; + const std::string fName = + "." + std::string(&adios2::PathSeparator, 1) + "BPWriteAttributeReadSingleTypesVar.h5"; const std::string zero = std::to_string(0); const std::string s1_Single = std::string("s1_Single_") + zero; @@ -385,8 +380,7 @@ TEST_F(BPWriteReadAttributeTestADIOS2, BPWriteReadSingleTypesVar) // When collective meta generation has landed, use // generateNewSmallTestData(m_TestData, 0, mpiRank, mpiSize); // Generate current testing data - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, 0, 0, 0); + SmallTestData currentTestData = generateNewSmallTestData(m_TestData, 0, 0, 0); const std::string separator = "/"; @@ -403,30 +397,19 @@ TEST_F(BPWriteReadAttributeTestADIOS2, BPWriteReadSingleTypesVar) // Declare Single Value Attributes auto var = io.DefineVariable("myVar"); - io.DefineAttribute(s1_Single, currentTestData.S1, - var.Name()); - io.DefineAttribute(i8_Single, currentTestData.I8.front(), - var.Name()); - io.DefineAttribute(i16_Single, currentTestData.I16.front(), - var.Name()); - io.DefineAttribute(i32_Single, currentTestData.I32.front(), - var.Name()); - io.DefineAttribute(i64_Single, currentTestData.I64.front(), - var.Name()); + io.DefineAttribute(s1_Single, currentTestData.S1, var.Name()); + io.DefineAttribute(i8_Single, currentTestData.I8.front(), var.Name()); + io.DefineAttribute(i16_Single, currentTestData.I16.front(), var.Name()); + io.DefineAttribute(i32_Single, currentTestData.I32.front(), var.Name()); + io.DefineAttribute(i64_Single, currentTestData.I64.front(), var.Name()); - io.DefineAttribute(u8_Single, currentTestData.U8.front(), - var.Name()); - io.DefineAttribute(u16_Single, currentTestData.U16.front(), - var.Name()); - io.DefineAttribute(u32_Single, currentTestData.U32.front(), - var.Name()); - io.DefineAttribute(u64_Single, currentTestData.U64.front(), - var.Name()); - - io.DefineAttribute(r32_Single, currentTestData.R32.front(), - var.Name()); - io.DefineAttribute(r64_Single, currentTestData.R64.front(), - var.Name()); + io.DefineAttribute(u8_Single, currentTestData.U8.front(), var.Name()); + io.DefineAttribute(u16_Single, currentTestData.U16.front(), var.Name()); + io.DefineAttribute(u32_Single, currentTestData.U32.front(), var.Name()); + io.DefineAttribute(u64_Single, currentTestData.U64.front(), var.Name()); + + io.DefineAttribute(r32_Single, currentTestData.R32.front(), var.Name()); + io.DefineAttribute(r64_Single, currentTestData.R64.front(), var.Name()); adios2::Engine engine = io.Open(fName, adios2::Mode::Write); engine.Put(var, 10); @@ -441,23 +424,16 @@ TEST_F(BPWriteReadAttributeTestADIOS2, BPWriteReadSingleTypesVar) auto var = ioRead.InquireVariable("myVar"); - auto attr_s1 = - ioRead.InquireAttribute(s1_Single, var.Name()); + auto attr_s1 = ioRead.InquireAttribute(s1_Single, var.Name()); auto attr_i8 = ioRead.InquireAttribute(i8_Single, var.Name()); - auto attr_i16 = - ioRead.InquireAttribute(i16_Single, var.Name()); - auto attr_i32 = - ioRead.InquireAttribute(i32_Single, var.Name()); - auto attr_i64 = - ioRead.InquireAttribute(i64_Single, var.Name()); + auto attr_i16 = ioRead.InquireAttribute(i16_Single, var.Name()); + auto attr_i32 = ioRead.InquireAttribute(i32_Single, var.Name()); + auto attr_i64 = ioRead.InquireAttribute(i64_Single, var.Name()); auto attr_u8 = ioRead.InquireAttribute(u8_Single, var.Name()); - auto attr_u16 = - ioRead.InquireAttribute(u16_Single, var.Name()); - auto attr_u32 = - ioRead.InquireAttribute(u32_Single, var.Name()); - auto attr_u64 = - ioRead.InquireAttribute(u64_Single, var.Name()); + auto attr_u16 = ioRead.InquireAttribute(u16_Single, var.Name()); + auto attr_u32 = ioRead.InquireAttribute(u32_Single, var.Name()); + auto attr_u64 = ioRead.InquireAttribute(u64_Single, var.Name()); auto attr_r32 = ioRead.InquireAttribute(r32_Single, var.Name()); auto attr_r64 = ioRead.InquireAttribute(r64_Single, var.Name()); @@ -535,8 +511,8 @@ TEST_F(BPWriteReadAttributeTestADIOS2, BPWriteReadSingleTypesVar) // ADIOS2 write read for array attributes TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadArrayTypesVar) { - const std::string fName = "." + std::string(&adios2::PathSeparator, 1) + - "BPWriteAttributeReadArrayTypesVar.h5"; + const std::string fName = + "." + std::string(&adios2::PathSeparator, 1) + "BPWriteAttributeReadArrayTypesVar.h5"; #ifdef TEST_HDF5_MPI int mpiRank = 0, mpiSize = 1; @@ -559,8 +535,7 @@ TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadArrayTypesVar) const std::string separator = "/"; - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, 0, 0, 0); + SmallTestData currentTestData = generateNewSmallTestData(m_TestData, 0, 0, 0); // Write test data using BP #ifdef TEST_HDF5_MPI @@ -577,8 +552,8 @@ TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadArrayTypesVar) io.DefineAttribute(s1_Array, currentTestData.S3.data(), currentTestData.S3.size(), var.Name()); - io.DefineAttribute(i8_Array, currentTestData.I8.data(), - currentTestData.I8.size(), var.Name()); + io.DefineAttribute(i8_Array, currentTestData.I8.data(), currentTestData.I8.size(), + var.Name()); io.DefineAttribute(i16_Array, currentTestData.I16.data(), currentTestData.I16.size(), var.Name()); io.DefineAttribute(i32_Array, currentTestData.I32.data(), @@ -586,8 +561,8 @@ TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadArrayTypesVar) io.DefineAttribute(i64_Array, currentTestData.I64.data(), currentTestData.I64.size(), var.Name()); - io.DefineAttribute(u8_Array, currentTestData.U8.data(), - currentTestData.U8.size(), var.Name()); + io.DefineAttribute(u8_Array, currentTestData.U8.data(), currentTestData.U8.size(), + var.Name()); io.DefineAttribute(u16_Array, currentTestData.U16.data(), currentTestData.U16.size(), var.Name()); io.DefineAttribute(u32_Array, currentTestData.U32.data(), @@ -595,8 +570,8 @@ TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadArrayTypesVar) io.DefineAttribute(u64_Array, currentTestData.U64.data(), currentTestData.U64.size(), var.Name()); - io.DefineAttribute(r32_Array, currentTestData.R32.data(), - currentTestData.R32.size(), var.Name()); + io.DefineAttribute(r32_Array, currentTestData.R32.data(), currentTestData.R32.size(), + var.Name()); io.DefineAttribute(r64_Array, currentTestData.R64.data(), currentTestData.R64.size(), var.Name()); @@ -616,8 +591,7 @@ TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadArrayTypesVar) auto var = ioRead.InquireVariable("myVar"); - auto attr_s1 = - ioRead.InquireAttribute(s1_Array, var.Name()); + auto attr_s1 = ioRead.InquireAttribute(s1_Array, var.Name()); auto attr_i8 = ioRead.InquireAttribute(i8_Array, var.Name()); auto attr_i16 = ioRead.InquireAttribute(i16_Array, var.Name()); @@ -625,12 +599,9 @@ TEST_F(BPWriteReadAttributeTestADIOS2, ADIOS2BPWriteReadArrayTypesVar) auto attr_i64 = ioRead.InquireAttribute(i64_Array, var.Name()); auto attr_u8 = ioRead.InquireAttribute(u8_Array, var.Name()); - auto attr_u16 = - ioRead.InquireAttribute(u16_Array, var.Name()); - auto attr_u32 = - ioRead.InquireAttribute(u32_Array, var.Name()); - auto attr_u64 = - ioRead.InquireAttribute(u64_Array, var.Name()); + auto attr_u16 = ioRead.InquireAttribute(u16_Array, var.Name()); + auto attr_u32 = ioRead.InquireAttribute(u32_Array, var.Name()); + auto attr_u64 = ioRead.InquireAttribute(u64_Array, var.Name()); auto attr_r32 = ioRead.InquireAttribute(r32_Array, var.Name()); auto attr_r64 = ioRead.InquireAttribute(r64_Array, var.Name()); diff --git a/testing/adios2/engine/hdf5/TestNativeHDF5WriteRead.cpp b/testing/adios2/engine/hdf5/TestNativeHDF5WriteRead.cpp index ec10248492..e75ef25c20 100644 --- a/testing/adios2/engine/hdf5/TestNativeHDF5WriteRead.cpp +++ b/testing/adios2/engine/hdf5/TestNativeHDF5WriteRead.cpp @@ -33,14 +33,12 @@ class HDF5NativeReader bool Advance(); - void GetVarInfo(const std::string varName, std::vector &dims, - hid_t &h5Type); + void GetVarInfo(const std::string varName, std::vector &dims, hid_t &h5Type); // If offset, count and memspaceSize are provided, then variable would be // read by selection void ReadString(const std::string varName, std::string &result); - void ReadVar(const std::string varName, void *dataArray, - hsize_t *offset = nullptr, hsize_t *count = nullptr, - const size_t memsspaceSize = 0); + void ReadVar(const std::string varName, void *dataArray, hsize_t *offset = nullptr, + hsize_t *count = nullptr, const size_t memsspaceSize = 0); int m_CurrentTimeStep; unsigned int m_TotalTimeSteps; @@ -63,12 +61,10 @@ class HDF5NativeWriter void Advance(); - void CreateAndStoreScalar(std::string const &variableName, hid_t h5Type, - const void *values); - void CreateAndStoreVar(std::string const &variableName, int dimSize, - hid_t h5Type, const hsize_t *global_dims, - const hsize_t *offsets, const hsize_t *counts, - const void *values); + void CreateAndStoreScalar(std::string const &variableName, hid_t h5Type, const void *values); + void CreateAndStoreVar(std::string const &variableName, int dimSize, hid_t h5Type, + const hsize_t *global_dims, const hsize_t *offsets, + const hsize_t *counts, const void *values); /* void WriteVar(const std::string varName, void *dataArray, @@ -105,15 +101,13 @@ HDF5NativeWriter::HDF5NativeWriter(const std::string &fileName) /* * Create a new file collectively and release property list identifier. */ - m_FileId = H5Fcreate(fileName.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, - m_FilePropertyListId); + m_FileId = H5Fcreate(fileName.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, m_FilePropertyListId); if (m_FileId < 0) { throw std::runtime_error("Unable to create file: " + fileName); } - m_GroupId = H5Gcreate2(m_FileId, ts0.c_str(), H5P_DEFAULT, H5P_DEFAULT, - H5P_DEFAULT); + m_GroupId = H5Gcreate2(m_FileId, ts0.c_str(), H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (m_GroupId < 0) { @@ -131,8 +125,7 @@ HDF5NativeWriter::~HDF5NativeWriter() // write NumStep attr hid_t s = H5Screate(H5S_SCALAR); - hid_t attr = H5Acreate(m_FileId, "NumSteps", H5T_NATIVE_UINT, s, - H5P_DEFAULT, H5P_DEFAULT); + hid_t attr = H5Acreate(m_FileId, "NumSteps", H5T_NATIVE_UINT, s, H5P_DEFAULT, H5P_DEFAULT); unsigned int totalAdiosSteps = m_CurrentTimeStep + 1; if (m_GroupId < 0) @@ -164,18 +157,16 @@ void HDF5NativeWriter::CheckWriteGroup() std::string stepName = "/Step" + std::to_string(m_CurrentTimeStep); - m_GroupId = H5Gcreate2(m_FileId, stepName.c_str(), H5P_DEFAULT, H5P_DEFAULT, - H5P_DEFAULT); + m_GroupId = H5Gcreate2(m_FileId, stepName.c_str(), H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (m_GroupId < 0) { - throw std::runtime_error("ERROR: Unable to create HDF5 group " + - stepName); + throw std::runtime_error("ERROR: Unable to create HDF5 group " + stepName); } } -void HDF5NativeWriter::CreateAndStoreScalar(std::string const &variableName, - hid_t h5Type, const void *values) +void HDF5NativeWriter::CreateAndStoreScalar(std::string const &variableName, hid_t h5Type, + const void *values) { CheckWriteGroup(); @@ -190,10 +181,9 @@ void HDF5NativeWriter::CreateAndStoreScalar(std::string const &variableName, if (h5Type != H5T_STRING) { - dsetID = H5Dcreate(m_GroupId, variableName.c_str(), h5Type, filespaceID, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - herr_t status = - H5Dwrite(dsetID, h5Type, H5S_ALL, H5S_ALL, plistID, values); + dsetID = H5Dcreate(m_GroupId, variableName.c_str(), h5Type, filespaceID, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); + herr_t status = H5Dwrite(dsetID, h5Type, H5S_ALL, H5S_ALL, plistID, values); EXPECT_TRUE(status >= 0); } else @@ -206,8 +196,8 @@ void HDF5NativeWriter::CreateAndStoreScalar(std::string const &variableName, ret = H5Tset_strpad(type, H5T_STR_NULLTERM); EXPECT_TRUE(ret >= 0); /* Test creating a "normal" sized string attribute */ - dsetID = H5Dcreate(m_GroupId, variableName.c_str(), type, filespaceID, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + dsetID = H5Dcreate(m_GroupId, variableName.c_str(), type, filespaceID, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); ret = H5Dwrite(dsetID, type, H5S_ALL, H5S_ALL, plistID, values); EXPECT_TRUE(ret >= 0); @@ -216,8 +206,7 @@ void HDF5NativeWriter::CreateAndStoreScalar(std::string const &variableName, char *val = (char *)(calloc(typesize, sizeof(char))); hid_t ret2 = H5Dread(dsetID, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, val); - std::cerr << " .... typesize=" << typesize << " val=" << val - << std::endl; + std::cerr << " .... typesize=" << typesize << " val=" << val << std::endl; free val; #endif } @@ -226,12 +215,9 @@ void HDF5NativeWriter::CreateAndStoreScalar(std::string const &variableName, H5Dclose(dsetID); } -void HDF5NativeWriter::CreateAndStoreVar(std::string const &variableName, - int dimSize, hid_t h5Type, - const hsize_t *global_dims, - const hsize_t *offsets, - const hsize_t *counts, - const void *values) +void HDF5NativeWriter::CreateAndStoreVar(std::string const &variableName, int dimSize, hid_t h5Type, + const hsize_t *global_dims, const hsize_t *offsets, + const hsize_t *counts, const void *values) { if (h5Type == H5T_STRING) { @@ -242,8 +228,8 @@ void HDF5NativeWriter::CreateAndStoreVar(std::string const &variableName, CheckWriteGroup(); hid_t fileSpace = H5Screate_simple(dimSize, global_dims, NULL); - hid_t dsetID = H5Dcreate(m_GroupId, variableName.c_str(), h5Type, fileSpace, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + hid_t dsetID = H5Dcreate(m_GroupId, variableName.c_str(), h5Type, fileSpace, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); hid_t memSpace = H5Screate_simple(dimSize, counts, NULL); // Select hyperslab @@ -256,13 +242,11 @@ void HDF5NativeWriter::CreateAndStoreVar(std::string const &variableName, #ifdef TEST_HDF5_MPI H5Pset_dxpl_mpio(plistID, H5FD_MPIO_COLLECTIVE); #endif - herr_t status = - H5Dwrite(dsetID, h5Type, memSpace, fileSpace, plistID, values); + herr_t status = H5Dwrite(dsetID, h5Type, memSpace, fileSpace, plistID, values); if (status < 0) { - throw std::runtime_error( - "ERROR: HDF5 file Write failed, in call to Write\n"); + throw std::runtime_error("ERROR: HDF5 file Write failed, in call to Write\n"); } H5Dclose(dsetID); @@ -304,8 +288,7 @@ HDF5NativeReader::HDF5NativeReader(const std::string fileName) m_GroupId = H5Gopen(m_FileId, ts0.c_str(), H5P_DEFAULT); if (m_GroupId < 0) { - throw std::runtime_error("Unable to open group " + ts0 + - " for reading"); + throw std::runtime_error("Unable to open group " + ts0 + " for reading"); } hid_t attrId = H5Aopen(m_FileId, "NumSteps", H5P_DEFAULT); @@ -328,35 +311,31 @@ HDF5NativeReader::~HDF5NativeReader() H5Pclose(m_FilePropertyListId); } -void HDF5NativeReader::GetVarInfo(const std::string varName, - std::vector &dims, hid_t &h5Type) +void HDF5NativeReader::GetVarInfo(const std::string varName, std::vector &dims, + hid_t &h5Type) { hid_t dataSetId = H5Dopen(m_GroupId, varName.c_str(), H5P_DEFAULT); if (dataSetId < 0) { - throw std::runtime_error("Unable to open dataset " + varName + - " when getVarInfo"); + throw std::runtime_error("Unable to open dataset " + varName + " when getVarInfo"); } hid_t fileSpaceId = H5Dget_space(dataSetId); if (fileSpaceId < 0) { - throw std::runtime_error("Unable to get filespace for dataset " + - varName); + throw std::runtime_error("Unable to get filespace for dataset " + varName); } const int ndims = H5Sget_simple_extent_ndims(fileSpaceId); if (ndims < 0) { - throw std::runtime_error( - "Unable to get number of dimensions for dataset " + varName); + throw std::runtime_error("Unable to get number of dimensions for dataset " + varName); } dims.resize(ndims); if (H5Sget_simple_extent_dims(fileSpaceId, dims.data(), NULL) != ndims) { - throw std::runtime_error("Unable to get dimensions for dataset " + - varName); + throw std::runtime_error("Unable to get dimensions for dataset " + varName); } h5Type = H5Dget_type(dataSetId); @@ -382,16 +361,14 @@ bool HDF5NativeReader::Advance() m_GroupId = H5Gopen(m_FileId, tsName.c_str(), H5P_DEFAULT); if (m_GroupId < 0) { - throw std::runtime_error("Unable to open group " + tsName + - " for reading"); + throw std::runtime_error("Unable to open group " + tsName + " for reading"); } ++m_CurrentTimeStep; return true; } -void HDF5NativeReader::ReadString(const std::string varName, - std::string &result) +void HDF5NativeReader::ReadString(const std::string varName, std::string &result) { if (m_GroupId < 0) { @@ -402,8 +379,7 @@ void HDF5NativeReader::ReadString(const std::string varName, hid_t dataSetId = H5Dopen(m_GroupId, varName.c_str(), H5P_DEFAULT); if (dataSetId < 0) { - throw std::runtime_error("Unable to open dataset " + varName + - "when ReadVar"); + throw std::runtime_error("Unable to open dataset " + varName + "when ReadVar"); } hid_t h5Type = H5Dget_type(dataSetId); @@ -418,9 +394,8 @@ void HDF5NativeReader::ReadString(const std::string varName, H5Dclose(dataSetId); } -void HDF5NativeReader::ReadVar(const std::string varName, void *dataArray, - hsize_t *offset, hsize_t *count, - const size_t memspaceSize) +void HDF5NativeReader::ReadVar(const std::string varName, void *dataArray, hsize_t *offset, + hsize_t *count, const size_t memspaceSize) { if (m_GroupId < 0) { @@ -431,14 +406,12 @@ void HDF5NativeReader::ReadVar(const std::string varName, void *dataArray, hid_t dataSetId = H5Dopen(m_GroupId, varName.c_str(), H5P_DEFAULT); if (dataSetId < 0) { - throw std::runtime_error("Unable to open dataset " + varName + - "when ReadVar"); + throw std::runtime_error("Unable to open dataset " + varName + "when ReadVar"); } hid_t fileSpace = H5Dget_space(dataSetId); if (fileSpace < 0) { - throw std::runtime_error("Unable to get filespace for dataset " + - varName); + throw std::runtime_error("Unable to get filespace for dataset " + varName); } hid_t h5type = H5Dget_type(dataSetId); @@ -451,26 +424,22 @@ void HDF5NativeReader::ReadVar(const std::string varName, void *dataArray, // Get the dataspace hid_t dataspace = H5Dget_space(dataSetId); // Define hyperslab in the dataset - hid_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, offset, - NULL, count, NULL); + hid_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, offset, NULL, count, NULL); if (status < 0) { - throw std::runtime_error( - "Unable to create a selection for dataset" + varName); + throw std::runtime_error("Unable to create a selection for dataset" + varName); } hsize_t dimsm[1]; dimsm[0] = memspaceSize; hid_t memspace = H5Screate_simple(1, dimsm, NULL); - hid_t ret = H5Dread(dataSetId, h5type, memspace, dataspace, H5P_DEFAULT, - dataArray); + hid_t ret = H5Dread(dataSetId, h5type, memspace, dataspace, H5P_DEFAULT, dataArray); EXPECT_TRUE(ret >= 0); } else { - hid_t ret = H5Dread(dataSetId, h5type, H5S_ALL, H5S_ALL, H5P_DEFAULT, - dataArray); + hid_t ret = H5Dread(dataSetId, h5type, H5S_ALL, H5S_ALL, H5P_DEFAULT, dataArray); EXPECT_TRUE(ret >= 0); } @@ -964,8 +933,8 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteADIOS2HDF5Read1D8) var_r64.SetStepSelection({t, 1}); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); hdf5Reader.Get(var_iString, IString); @@ -1040,41 +1009,29 @@ TEST_F(HDF5WriteReadTest, HDF5WriteADIOS2HDF5Read1D8) SmallTestData currentTestData = generateNewSmallTestData(m_TestData, step, mpiRank, mpiSize); - h5writer.CreateAndStoreScalar("iString", H5T_STRING, - currentTestData.S1.data()); - h5writer.CreateAndStoreVar("ch", dimSize, H5T_NATIVE_UCHAR, - global_dims, offset, count, + h5writer.CreateAndStoreScalar("iString", H5T_STRING, currentTestData.S1.data()); + h5writer.CreateAndStoreVar("ch", dimSize, H5T_NATIVE_UCHAR, global_dims, offset, count, currentTestData.CHAR.data()); - h5writer.CreateAndStoreVar("i8", dimSize, H5T_NATIVE_INT8, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i8", dimSize, H5T_NATIVE_INT8, global_dims, offset, count, currentTestData.I8.data()); - h5writer.CreateAndStoreVar("i16", dimSize, H5T_NATIVE_SHORT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i16", dimSize, H5T_NATIVE_SHORT, global_dims, offset, count, currentTestData.I16.data()); - h5writer.CreateAndStoreVar("i32", dimSize, H5T_NATIVE_INT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i32", dimSize, H5T_NATIVE_INT, global_dims, offset, count, currentTestData.I32.data()); - h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LONG, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LONG, global_dims, offset, count, currentTestData.I64.data()); - h5writer.CreateAndStoreVar("u8", dimSize, H5T_NATIVE_UCHAR, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u8", dimSize, H5T_NATIVE_UCHAR, global_dims, offset, count, currentTestData.U8.data()); - h5writer.CreateAndStoreVar("u16", dimSize, H5T_NATIVE_USHORT, - global_dims, offset, count, - currentTestData.U16.data()); - h5writer.CreateAndStoreVar("u32", dimSize, H5T_NATIVE_UINT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u16", dimSize, H5T_NATIVE_USHORT, global_dims, offset, + count, currentTestData.U16.data()); + h5writer.CreateAndStoreVar("u32", dimSize, H5T_NATIVE_UINT, global_dims, offset, count, currentTestData.U32.data()); - h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULONG, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULONG, global_dims, offset, count, currentTestData.U64.data()); - h5writer.CreateAndStoreVar("r32", dimSize, H5T_NATIVE_FLOAT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("r32", dimSize, H5T_NATIVE_FLOAT, global_dims, offset, count, currentTestData.R32.data()); - h5writer.CreateAndStoreVar("r64", dimSize, H5T_NATIVE_DOUBLE, - global_dims, offset, count, - currentTestData.R64.data()); + h5writer.CreateAndStoreVar("r64", dimSize, H5T_NATIVE_DOUBLE, global_dims, offset, + count, currentTestData.R64.data()); h5writer.Advance(); } } @@ -1217,8 +1174,8 @@ TEST_F(HDF5WriteReadTest, HDF5WriteADIOS2HDF5Read1D8) var_r64.SetStepSelection({t, 1}); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); hdf5Reader.Get(var_iString, IString); @@ -1246,8 +1203,7 @@ TEST_F(HDF5WriteReadTest, HDF5WriteADIOS2HDF5Read1D8) ss << "t=" << t << " i=" << i << " rank=" << mpiRank; std::string msg = ss.str(); - EXPECT_EQ(static_cast(CHAR[i]), currentTestData.CHAR[i]) - << msg; + EXPECT_EQ(static_cast(CHAR[i]), currentTestData.CHAR[i]) << msg; EXPECT_EQ(I8[i], currentTestData.I8[i]) << msg; EXPECT_EQ(I16[i], currentTestData.I16[i]) << msg; EXPECT_EQ(I32[i], currentTestData.I32[i]) << msg; @@ -1307,36 +1263,28 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read2D2x4) static_cast(Nx * mpiSize)}; adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; auto var_iString = io.DefineVariable("iString"); EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -1373,8 +1321,7 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read2D2x4) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -1581,37 +1528,29 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteADIOS2HDF5Read2D2x4) static_cast(Nx * mpiSize)}; adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; auto var_iString = io.DefineVariable("iString"); EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -1648,8 +1587,7 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteADIOS2HDF5Read2D2x4) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -1828,8 +1766,8 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteADIOS2HDF5Read2D2x4) hdf5Reader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString, currentTestData.S1); @@ -1888,38 +1826,27 @@ TEST_F(HDF5WriteReadTest, HDF5WriteADIOS2HDF5Read2D2x4) SmallTestData currentTestData = generateNewSmallTestData(m_TestData, step, mpiRank, mpiSize); - h5writer.CreateAndStoreScalar("iString", H5T_STRING, - currentTestData.S1.data()); - h5writer.CreateAndStoreVar("i8", dimSize, H5T_NATIVE_INT8, - global_dims, offset, count, + h5writer.CreateAndStoreScalar("iString", H5T_STRING, currentTestData.S1.data()); + h5writer.CreateAndStoreVar("i8", dimSize, H5T_NATIVE_INT8, global_dims, offset, count, currentTestData.I8.data()); - h5writer.CreateAndStoreVar("i16", dimSize, H5T_NATIVE_SHORT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i16", dimSize, H5T_NATIVE_SHORT, global_dims, offset, count, currentTestData.I16.data()); - h5writer.CreateAndStoreVar("i32", dimSize, H5T_NATIVE_INT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i32", dimSize, H5T_NATIVE_INT, global_dims, offset, count, currentTestData.I32.data()); - h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LONG, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LONG, global_dims, offset, count, currentTestData.I64.data()); - h5writer.CreateAndStoreVar("u8", dimSize, H5T_NATIVE_UCHAR, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u8", dimSize, H5T_NATIVE_UCHAR, global_dims, offset, count, currentTestData.U8.data()); - h5writer.CreateAndStoreVar("u16", dimSize, H5T_NATIVE_USHORT, - global_dims, offset, count, - currentTestData.U16.data()); - h5writer.CreateAndStoreVar("u32", dimSize, H5T_NATIVE_UINT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u16", dimSize, H5T_NATIVE_USHORT, global_dims, offset, + count, currentTestData.U16.data()); + h5writer.CreateAndStoreVar("u32", dimSize, H5T_NATIVE_UINT, global_dims, offset, count, currentTestData.U32.data()); - h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULONG, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULONG, global_dims, offset, count, currentTestData.U64.data()); - h5writer.CreateAndStoreVar("r32", dimSize, H5T_NATIVE_FLOAT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("r32", dimSize, H5T_NATIVE_FLOAT, global_dims, offset, count, currentTestData.R32.data()); - h5writer.CreateAndStoreVar("r64", dimSize, H5T_NATIVE_DOUBLE, - global_dims, offset, count, - currentTestData.R64.data()); + h5writer.CreateAndStoreVar("r64", dimSize, H5T_NATIVE_DOUBLE, global_dims, offset, + count, currentTestData.R64.data()); h5writer.Advance(); } } @@ -2078,8 +2005,8 @@ TEST_F(HDF5WriteReadTest, HDF5WriteADIOS2HDF5Read2D2x4) hdf5Reader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString, currentTestData.S1); @@ -2148,37 +2075,29 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read2D4x2) static_cast(mpiSize * Nx)}; adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; auto var_iString = io.DefineVariable("iString"); EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -2215,8 +2134,7 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read2D4x2) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -2420,36 +2338,28 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteADIOS2HDF5Read2D4x2) static_cast(mpiSize * Nx)}; adios2::Dims start{static_cast(0), static_cast(mpiRank * Nx)}; - adios2::Dims count{static_cast(Ny), - static_cast(Nx)}; + adios2::Dims count{static_cast(Ny), static_cast(Nx)}; auto var_iString = io.DefineVariable("iString"); EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -2486,8 +2396,7 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteADIOS2HDF5Read2D4x2) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -2663,8 +2572,8 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteADIOS2HDF5Read2D4x2) hdf5Reader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString, currentTestData.S1); @@ -2723,38 +2632,27 @@ TEST_F(HDF5WriteReadTest, HDF5WriteADIOS2HDF5Read2D4x2) SmallTestData currentTestData = generateNewSmallTestData(m_TestData, step, mpiRank, mpiSize); - h5writer.CreateAndStoreScalar("iString", H5T_STRING, - currentTestData.S1.data()); - h5writer.CreateAndStoreVar("i8", dimSize, H5T_NATIVE_INT8, - global_dims, offset, count, + h5writer.CreateAndStoreScalar("iString", H5T_STRING, currentTestData.S1.data()); + h5writer.CreateAndStoreVar("i8", dimSize, H5T_NATIVE_INT8, global_dims, offset, count, currentTestData.I8.data()); - h5writer.CreateAndStoreVar("i16", dimSize, H5T_NATIVE_SHORT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i16", dimSize, H5T_NATIVE_SHORT, global_dims, offset, count, currentTestData.I16.data()); - h5writer.CreateAndStoreVar("i32", dimSize, H5T_NATIVE_INT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i32", dimSize, H5T_NATIVE_INT, global_dims, offset, count, currentTestData.I32.data()); - h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LONG, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LONG, global_dims, offset, count, currentTestData.I64.data()); - h5writer.CreateAndStoreVar("u8", dimSize, H5T_NATIVE_UCHAR, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u8", dimSize, H5T_NATIVE_UCHAR, global_dims, offset, count, currentTestData.U8.data()); - h5writer.CreateAndStoreVar("u16", dimSize, H5T_NATIVE_USHORT, - global_dims, offset, count, - currentTestData.U16.data()); - h5writer.CreateAndStoreVar("u32", dimSize, H5T_NATIVE_UINT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u16", dimSize, H5T_NATIVE_USHORT, global_dims, offset, + count, currentTestData.U16.data()); + h5writer.CreateAndStoreVar("u32", dimSize, H5T_NATIVE_UINT, global_dims, offset, count, currentTestData.U32.data()); - h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULONG, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULONG, global_dims, offset, count, currentTestData.U64.data()); - h5writer.CreateAndStoreVar("r32", dimSize, H5T_NATIVE_FLOAT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("r32", dimSize, H5T_NATIVE_FLOAT, global_dims, offset, count, currentTestData.R32.data()); - h5writer.CreateAndStoreVar("r64", dimSize, H5T_NATIVE_DOUBLE, - global_dims, offset, count, - currentTestData.R64.data()); + h5writer.CreateAndStoreVar("r64", dimSize, H5T_NATIVE_DOUBLE, global_dims, offset, + count, currentTestData.R64.data()); h5writer.Advance(); } } @@ -2913,8 +2811,8 @@ TEST_F(HDF5WriteReadTest, HDF5WriteADIOS2HDF5Read2D4x2) hdf5Reader.PerformGets(); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); EXPECT_EQ(IString, currentTestData.S1); @@ -3148,8 +3046,8 @@ TEST_F(HDF5WriteReadTest, /*DISABLE_*/ ATTRTESTADIOS2vsHDF5) var3.SetStepSelection({t, 1}); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(t), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(t), mpiRank, mpiSize); hdf5Reader.BeginStep(); @@ -3173,8 +3071,7 @@ TEST_F(HDF5WriteReadTest, /*DISABLE_*/ ATTRTESTADIOS2vsHDF5) } } - const std::map &attributesInfo = - io.AvailableAttributes(); + const std::map &attributesInfo = io.AvailableAttributes(); EXPECT_EQ(numAttr, attributesInfo.size()); @@ -3186,8 +3083,7 @@ TEST_F(HDF5WriteReadTest, /*DISABLE_*/ ATTRTESTADIOS2vsHDF5) "io.m_EngineStep=2 but var4 is only in step 1, this it " "thinks so such var" << std::endl; - std::cout << " need to fix semantics of io.AvailableAttributes()" - << std::endl; + std::cout << " need to fix semantics of io.AvailableAttributes()" << std::endl; // EXPECT_EQ(1, io.AvailableAttributes(var4Name).size()); std::cout << " other tests will follow after William make changes: " diff --git a/testing/adios2/engine/inline/TestInlineWriteRead.cpp b/testing/adios2/engine/inline/TestInlineWriteRead.cpp index 7cadb773aa..d572574992 100644 --- a/testing/adios2/engine/inline/TestInlineWriteRead.cpp +++ b/testing/adios2/engine/inline/TestInlineWriteRead.cpp @@ -28,8 +28,7 @@ class InlineWriteRead : public ::testing::Test // helper template -typename adios2::Variable::Info setSelection(adios2::Variable &var_i8, - size_t step, +typename adios2::Variable::Info setSelection(adios2::Variable &var_i8, size_t step, adios2::Engine &inlineReader) { var_i8.SetStepSelection({step, 1}); @@ -43,8 +42,7 @@ typename adios2::Variable::Info setSelection(adios2::Variable &var_i8, } template -void testBlocksInfo(adios2::Variable &var, size_t step, - adios2::Engine &inlineReader) +void testBlocksInfo(adios2::Variable &var, size_t step, adios2::Engine &inlineReader) { var.SetStepSelection({step, 1}); auto blocksInfo = inlineReader.BlocksInfo(var, step); @@ -86,36 +84,27 @@ TEST_F(InlineWriteRead, InlineWriteRead1D8) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -125,17 +114,15 @@ TEST_F(InlineWriteRead, InlineWriteRead1D8) // writerID parameter makes sure the reader can find the writer. io.SetParameter("verbose", "4"); - adios2::Engine inlineWriter = - io.Open(fname + "_write", adios2::Mode::Write); + adios2::Engine inlineWriter = io.Open(fname + "_write", adios2::Mode::Write); - adios2::Engine inlineReader = - io.Open(fname + "_read", adios2::Mode::Read); + adios2::Engine inlineReader = io.Open(fname + "_read", adios2::Mode::Read); for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData testData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData testData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto wvar_iString = io.InquireVariable("iString"); @@ -280,10 +267,8 @@ TEST_F(InlineWriteRead, InlineWriteRead1D8) auto info_u64 = setSelection(var_u64, step, inlineReader); auto info_r32 = setSelection(var_r32, step, inlineReader); auto info_r64 = setSelection(var_r64, step, inlineReader); - auto info_cr32 = - setSelection>(var_cr32, step, inlineReader); - auto info_cr64 = setSelection>(var_cr64, step, - inlineReader); + auto info_cr32 = setSelection>(var_cr32, step, inlineReader); + auto info_cr64 = setSelection>(var_cr64, step, inlineReader); testBlocksInfo(var_i8, step, inlineReader); testBlocksInfo(var_i16, step, inlineReader); @@ -299,8 +284,8 @@ TEST_F(InlineWriteRead, InlineWriteRead1D8) testBlocksInfo>(var_cr64, step, inlineReader); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); inlineReader.EndStep(); const int8_t *I8 = info_i8.Data(); @@ -384,36 +369,27 @@ TEST_F(InlineWriteRead, InlineWriteRead2D2x4) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); - auto var_cr32 = io.DefineVariable>( - "cr32", shape, start, count); + auto var_cr32 = io.DefineVariable>("cr32", shape, start, count); EXPECT_TRUE(var_cr32); - auto var_cr64 = io.DefineVariable>( - "cr64", shape, start, count); + auto var_cr64 = io.DefineVariable>("cr64", shape, start, count); EXPECT_TRUE(var_cr64); } @@ -423,17 +399,15 @@ TEST_F(InlineWriteRead, InlineWriteRead2D2x4) // writerID parameter makes sure the reader can find the writer. io.SetParameter("verbose", "4"); - adios2::Engine inlineWriter = - io.Open(fname + "_write", adios2::Mode::Write); + adios2::Engine inlineWriter = io.Open(fname + "_write", adios2::Mode::Write); - adios2::Engine inlineReader = - io.Open(fname + "_read", adios2::Mode::Read); + adios2::Engine inlineReader = io.Open(fname + "_read", adios2::Mode::Read); for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData testData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData testData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto wvar_iString = io.InquireVariable("iString"); @@ -452,8 +426,7 @@ TEST_F(InlineWriteRead, InlineWriteRead2D2x4) // Make a 2D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces - adios2::Box sel( - {0, static_cast(mpiRank * Nx)}, {Ny, Nx}); + adios2::Box sel({0, static_cast(mpiRank * Nx)}, {Ny, Nx}); EXPECT_THROW(wvar_iString.SetSelection(sel), std::invalid_argument); wvar_i8.SetSelection(sel); @@ -581,14 +554,12 @@ TEST_F(InlineWriteRead, InlineWriteRead2D2x4) auto info_u64 = setSelection(var_u64, step, inlineReader); auto info_r32 = setSelection(var_r32, step, inlineReader); auto info_r64 = setSelection(var_r64, step, inlineReader); - auto info_cr32 = - setSelection>(var_cr32, step, inlineReader); - auto info_cr64 = setSelection>(var_cr64, step, - inlineReader); + auto info_cr32 = setSelection>(var_cr32, step, inlineReader); + auto info_cr64 = setSelection>(var_cr64, step, inlineReader); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); inlineReader.EndStep(); const int8_t *I8 = info_i8.Data(); @@ -663,8 +634,7 @@ TEST_F(InlineWriteRead, InlineWriteReadContracts) auto var_iString = io.DefineVariable("iString"); EXPECT_TRUE(var_iString); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); } @@ -674,19 +644,17 @@ TEST_F(InlineWriteRead, InlineWriteReadContracts) // writerID parameter makes sure the reader can find the writer. io.SetParameter("verbose", "4"); - adios2::Engine inlineWriter = - io.Open(fname + "_write", adios2::Mode::Write); + adios2::Engine inlineWriter = io.Open(fname + "_write", adios2::Mode::Write); - adios2::Engine inlineReader = - io.Open(fname + "_read", adios2::Mode::Read); + adios2::Engine inlineReader = io.Open(fname + "_read", adios2::Mode::Read); // Want to test that the engine correctly fails when using the engine // incorrectly for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData testData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData testData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto wvar_iString = io.InquireVariable("iString"); @@ -706,8 +674,7 @@ TEST_F(InlineWriteRead, InlineWriteReadContracts) EXPECT_THROW(inlineReader.EndStep(), std::runtime_error); inlineWriter.Put(wvar_iString, testData.S1, adios2::Mode::Sync); - EXPECT_THROW(inlineWriter.Put(wvar_i32, testData.I32.data(), - adios2::Mode::Sync), + EXPECT_THROW(inlineWriter.Put(wvar_i32, testData.I32.data(), adios2::Mode::Sync), std::invalid_argument); inlineWriter.Put(wvar_i32, testData.I32.data()); inlineWriter.EndStep(); @@ -733,8 +700,8 @@ TEST_F(InlineWriteRead, InlineWriteReadContracts) testBlocksInfo(var_i32, step, inlineReader); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); const int32_t *testI32 = info_i32.Data(); EXPECT_EQ(testI32, nullptr); @@ -787,8 +754,7 @@ TEST_F(InlineWriteRead, InlineWriteReadContracts2) auto var_iString = io.DefineVariable("iString"); EXPECT_TRUE(var_iString); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); } @@ -798,19 +764,17 @@ TEST_F(InlineWriteRead, InlineWriteReadContracts2) // writerID parameter makes sure the reader can find the writer. io.SetParameter("verbose", "4"); - adios2::Engine inlineWriter = - io.Open(fname + "_write", adios2::Mode::Write); + adios2::Engine inlineWriter = io.Open(fname + "_write", adios2::Mode::Write); - adios2::Engine inlineReader = - io.Open(fname + "_read", adios2::Mode::Read); + adios2::Engine inlineReader = io.Open(fname + "_read", adios2::Mode::Read); // Want to test that the engine correctly fails when using the engine // incorrectly for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData testData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData testData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto wvar_iString = io.InquireVariable("iString"); @@ -824,8 +788,7 @@ TEST_F(InlineWriteRead, InlineWriteReadContracts2) wvar_i32.SetSelection(sel); inlineWriter.Put(wvar_iString, testData.S1); - EXPECT_THROW(inlineWriter.Put(wvar_i32, testData.I32.data(), - adios2::Mode::Sync), + EXPECT_THROW(inlineWriter.Put(wvar_i32, testData.I32.data(), adios2::Mode::Sync), std::invalid_argument); inlineWriter.Put(wvar_i32, testData.I32.data()); inlineWriter.PerformPuts(); @@ -845,8 +808,8 @@ TEST_F(InlineWriteRead, InlineWriteReadContracts2) testBlocksInfo(var_i32, step, inlineReader); // Generate test data for each rank uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); const int32_t *testI32 = info_i32.Data(); EXPECT_EQ(testI32, nullptr); @@ -884,8 +847,7 @@ TEST_F(InlineWriteRead, IOInvariants) adios2::Engine inlineWriter = io.Open("writer", adios2::Mode::Write); EXPECT_TRUE(inlineWriter); // The inline engine does not support multiple writers: - EXPECT_THROW(io.Open("another_writer", adios2::Mode::Write), - std::exception); + EXPECT_THROW(io.Open("another_writer", adios2::Mode::Write), std::exception); // The inline engine does not support append mode: EXPECT_THROW(io.Open("append_mode", adios2::Mode::Append), std::exception); adios2::Engine inlineReader = io.Open("reader", adios2::Mode::Read); @@ -914,11 +876,10 @@ TEST_F(InlineWriteRead, PointerArithmetic) size_t N = 256; // Test local array: - auto local_array = - io.DefineVariable("u", {}, {}, {N}, adios2::ConstantDims); + auto local_array = io.DefineVariable("u", {}, {}, {N}, adios2::ConstantDims); // Test global array: - auto global_array = io.DefineVariable( - "v", {mpiSize * N}, {mpiRank * N}, {N}, adios2::ConstantDims); + auto global_array = + io.DefineVariable("v", {mpiSize * N}, {mpiRank * N}, {N}, adios2::ConstantDims); for (int64_t timeStep = 0; timeStep < 2; ++timeStep) { writer.BeginStep(); diff --git a/testing/adios2/engine/mhs/TestMhsCommon.h b/testing/adios2/engine/mhs/TestMhsCommon.h index 5d86169a72..2332ea4cd9 100644 --- a/testing/adios2/engine/mhs/TestMhsCommon.h +++ b/testing/adios2/engine/mhs/TestMhsCommon.h @@ -8,13 +8,11 @@ using namespace adios2; int printed_lines = 0; template -void PrintData(const T *data, const size_t step, const Dims &start, - const Dims &count, const std::string &var, - const int to_print_lines) +void PrintData(const T *data, const size_t step, const Dims &start, const Dims &count, + const std::string &var, const int to_print_lines) { - size_t size = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::cout << " Step: " << step << " Size:" << size << "\n"; size_t printsize = 1024; @@ -29,8 +27,7 @@ void PrintData(const T *data, const size_t step, const Dims &start, std::cout << data[i] << " "; if (s == count[1]) { - std::cout << " <--- Variable " << var << ", Step " << step - << std::endl; + std::cout << " <--- Variable " << var << ", Step " << step << std::endl; s = 0; } } @@ -60,23 +57,20 @@ void GenDataRecursive(std::vector start, std::vector count, for (size_t j = 0; j < count_next[0]; j++) { vec[i0 * count_next[0] + j] = { - static_cast(z * shape_next[0] + (j + start_next[0]) + - step), - 1}; + static_cast(z * shape_next[0] + (j + start_next[0]) + step), 1}; } } else { - GenDataRecursive(start_next, count_next, shape_next, i0, z, vec, - step); + GenDataRecursive(start_next, count_next, shape_next, i0, z, vec, step); } } } template void GenDataRecursive(std::vector start, std::vector count, - std::vector shape, size_t n0, size_t y, - std::vector &vec, const size_t step) + std::vector shape, size_t n0, size_t y, std::vector &vec, + const size_t step) { for (size_t i = 0; i < count[0]; i++) { @@ -94,44 +88,40 @@ void GenDataRecursive(std::vector start, std::vector count, { for (size_t j = 0; j < count_next[0]; j++) { - vec[i0 * count_next[0] + j] = static_cast( - z * shape_next[0] + (j + start_next[0]) + step); + vec[i0 * count_next[0] + j] = + static_cast(z * shape_next[0] + (j + start_next[0]) + step); } } else { - GenDataRecursive(start_next, count_next, shape_next, i0, z, vec, - step); + GenDataRecursive(start_next, count_next, shape_next, i0, z, vec, step); } } } template -void GenData(std::vector &vec, const size_t step, - const std::vector &start, const std::vector &count, - const std::vector &shape) +void GenData(std::vector &vec, const size_t step, const std::vector &start, + const std::vector &count, const std::vector &shape) { - size_t total_size = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t total_size = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); vec.resize(total_size); GenDataRecursive(start, count, shape, 0, 0, vec, step); } template -void VerifyData(const std::complex *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape, const std::string &var, - const int to_print_lines = 0, const int rank = 0) +void VerifyData(const std::complex *data, size_t step, const Dims &start, const Dims &count, + const Dims &shape, const std::string &var, const int to_print_lines = 0, + const int rank = 0) { - size_t size = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector> tmpdata(size); GenData(tmpdata, step, start, count, shape); for (size_t i = 0; i < size; ++i) { - ASSERT_EQ(data[i], tmpdata[i]) << "Step " << step << " Variable " << var - << " at " << i << std::endl; + ASSERT_EQ(data[i], tmpdata[i]) + << "Step " << step << " Variable " << var << " at " << i << std::endl; } if (rank == 0 && printed_lines < to_print_lines) { @@ -141,13 +131,11 @@ void VerifyData(const std::complex *data, size_t step, const Dims &start, } template -void VerifyData(const T *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape, const std::string &var, - const int to_print_lines = 0, const int rank = 0) +void VerifyData(const T *data, size_t step, const Dims &start, const Dims &count, const Dims &shape, + const std::string &var, const int to_print_lines = 0, const int rank = 0) { - size_t size = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector tmpdata(size); if (rank == 0 && printed_lines < to_print_lines) { @@ -157,7 +145,7 @@ void VerifyData(const T *data, size_t step, const Dims &start, GenData(tmpdata, step, start, count, shape); for (size_t i = 0; i < size; ++i) { - ASSERT_EQ(data[i], tmpdata[i]) << "Step " << step << " Variable " << var - << " at " << i << std::endl; + ASSERT_EQ(data[i], tmpdata[i]) + << "Step " << step << " Variable " << var << " at " << i << std::endl; } } diff --git a/testing/adios2/engine/mhs/TestMhsMultiRank.cpp b/testing/adios2/engine/mhs/TestMhsMultiRank.cpp index 45798a9585..b186d6b6c7 100644 --- a/testing/adios2/engine/mhs/TestMhsMultiRank.cpp +++ b/testing/adios2/engine/mhs/TestMhsMultiRank.cpp @@ -22,9 +22,8 @@ class MhsEngineTest : public ::testing::Test MhsEngineTest() = default; }; -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t rows, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t rows, + const adios2::Params &engineParams, const std::string &name) { if (mpiRank != 0) @@ -66,19 +65,14 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, std::cout << std::endl; adios2::Variable bpChars = io.InquireVariable("bpChars"); - adios2::Variable bpUChars = - io.InquireVariable("bpUChars"); - adios2::Variable bpShorts = - io.InquireVariable("bpShorts"); + adios2::Variable bpUChars = io.InquireVariable("bpUChars"); + adios2::Variable bpShorts = io.InquireVariable("bpShorts"); adios2::Variable bpUShorts = io.InquireVariable("bpUShorts"); adios2::Variable bpInts = io.InquireVariable("bpInts"); - adios2::Variable bpUInts = - io.InquireVariable("bpUInts"); - adios2::Variable bpFloats = - io.InquireVariable("bpFloats"); - adios2::Variable bpDoubles = - io.InquireVariable("bpDoubles"); + adios2::Variable bpUInts = io.InquireVariable("bpUInts"); + adios2::Variable bpFloats = io.InquireVariable("bpFloats"); + adios2::Variable bpDoubles = io.InquireVariable("bpDoubles"); adios2::Variable> bpComplexes = io.InquireVariable>("bpComplexes"); adios2::Variable> bpDComplexes = @@ -105,8 +99,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, VerifyData(myShorts.data(), step, {0, 0, 0}, shape, shape, "bpShorts"); readerEngine.Get(bpUShorts, myUShorts.data(), adios2::Mode::Sync); - VerifyData(myUShorts.data(), step, {0, 0, 0}, shape, shape, - "bpUShorts"); + VerifyData(myUShorts.data(), step, {0, 0, 0}, shape, shape, "bpUShorts"); readerEngine.Get(bpInts, myInts.data(), adios2::Mode::Sync); VerifyData(myInts.data(), step, {0, 0, 0}, shape, shape, "bpInts"); @@ -118,25 +111,21 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, VerifyData(myFloats.data(), step, {0, 0, 0}, shape, shape, "bpFloats"); readerEngine.Get(bpDoubles, myDoubles.data(), adios2::Mode::Sync); - VerifyData(myDoubles.data(), step, {0, 0, 0}, shape, shape, - "bpDoubles"); + VerifyData(myDoubles.data(), step, {0, 0, 0}, shape, shape, "bpDoubles"); readerEngine.Get(bpComplexes, myComplexes.data(), adios2::Mode::Sync); - VerifyData(myComplexes.data(), step, {0, 0, 0}, shape, shape, - "bpComplexes"); + VerifyData(myComplexes.data(), step, {0, 0, 0}, shape, shape, "bpComplexes"); readerEngine.Get(bpDComplexes, myDComplexes.data(), adios2::Mode::Sync); - VerifyData(myDComplexes.data(), step, {0, 0, 0}, shape, shape, - "bpDComplexes"); + VerifyData(myDComplexes.data(), step, {0, 0, 0}, shape, shape, "bpDComplexes"); readerEngine.EndStep(); } readerEngine.Close(); } -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t rows, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t rows, + const adios2::Params &engineParams, const std::string &name) { size_t datasize = 1; for (const auto &i : count) @@ -159,21 +148,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto bpChars = io.DefineVariable("bpChars", shape, start, count); - auto bpUChars = - io.DefineVariable("bpUChars", shape, start, count); + auto bpUChars = io.DefineVariable("bpUChars", shape, start, count); auto bpShorts = io.DefineVariable("bpShorts", shape, start, count); - auto bpUShorts = - io.DefineVariable("bpUShorts", shape, start, count); + auto bpUShorts = io.DefineVariable("bpUShorts", shape, start, count); auto bpInts = io.DefineVariable("bpInts", shape, start, count); - auto bpUInts = - io.DefineVariable("bpUInts", shape, start, count); + auto bpUInts = io.DefineVariable("bpUInts", shape, start, count); auto bpFloats = io.DefineVariable("bpFloats", shape, start, count); - auto bpDoubles = - io.DefineVariable("bpDoubles", shape, start, count); - auto bpComplexes = io.DefineVariable>( - "bpComplexes", shape, start, count); - auto bpDComplexes = io.DefineVariable>( - "bpDComplexes", shape, start, count); + auto bpDoubles = io.DefineVariable("bpDoubles", shape, start, count); + auto bpComplexes = io.DefineVariable>("bpComplexes", shape, start, count); + auto bpDComplexes = + io.DefineVariable>("bpDComplexes", shape, start, count); adios2::Engine writerEngine = io.Open(name, adios2::Mode::Write); for (size_t step = 0; step < 10; step++) @@ -211,10 +195,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, writerEngine.Put(bpUInts, myUInts.data(), adios2::Mode::Sync); writerEngine.Put(bpFloats, myFloats.data(), adios2::Mode::Sync); writerEngine.Put(bpDoubles, myDoubles.data(), adios2::Mode::Sync); - writerEngine.Put(bpComplexes, myComplexes.data(), - adios2::Mode::Sync); - writerEngine.Put(bpDComplexes, myDComplexes.data(), - adios2::Mode::Sync); + writerEngine.Put(bpComplexes, myComplexes.data(), adios2::Mode::Sync); + writerEngine.Put(bpDComplexes, myDComplexes.data(), adios2::Mode::Sync); } writerEngine.EndStep(); } diff --git a/testing/adios2/engine/mhs/TestMhsMultiReader.cpp b/testing/adios2/engine/mhs/TestMhsMultiReader.cpp index e7c3d70ac2..fc25e512d3 100644 --- a/testing/adios2/engine/mhs/TestMhsMultiReader.cpp +++ b/testing/adios2/engine/mhs/TestMhsMultiReader.cpp @@ -22,9 +22,8 @@ class MhsEngineTest : public ::testing::Test MhsEngineTest() = default; }; -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t rows, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t rows, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(MPI_COMM_WORLD); adios2::IO io = adios.DeclareIO("ms"); @@ -62,19 +61,14 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, ASSERT_EQ(vars.size(), 10); adios2::Variable bpChars = io.InquireVariable("bpChars"); - adios2::Variable bpUChars = - io.InquireVariable("bpUChars"); - adios2::Variable bpShorts = - io.InquireVariable("bpShorts"); + adios2::Variable bpUChars = io.InquireVariable("bpUChars"); + adios2::Variable bpShorts = io.InquireVariable("bpShorts"); adios2::Variable bpUShorts = io.InquireVariable("bpUShorts"); adios2::Variable bpInts = io.InquireVariable("bpInts"); - adios2::Variable bpUInts = - io.InquireVariable("bpUInts"); - adios2::Variable bpFloats = - io.InquireVariable("bpFloats"); - adios2::Variable bpDoubles = - io.InquireVariable("bpDoubles"); + adios2::Variable bpUInts = io.InquireVariable("bpUInts"); + adios2::Variable bpFloats = io.InquireVariable("bpFloats"); + adios2::Variable bpDoubles = io.InquireVariable("bpDoubles"); adios2::Variable> bpComplexes = io.InquireVariable>("bpComplexes"); adios2::Variable> bpDComplexes = @@ -101,8 +95,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, VerifyData(myShorts.data(), step, {0, 0, 0}, shape, shape, "bpShorts"); readerEngine.Get(bpUShorts, myUShorts.data(), adios2::Mode::Sync); - VerifyData(myUShorts.data(), step, {0, 0, 0}, shape, shape, - "bpUShorts"); + VerifyData(myUShorts.data(), step, {0, 0, 0}, shape, shape, "bpUShorts"); readerEngine.Get(bpInts, myInts.data(), adios2::Mode::Sync); VerifyData(myInts.data(), step, {0, 0, 0}, shape, shape, "bpInts"); @@ -114,25 +107,21 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, VerifyData(myFloats.data(), step, {0, 0, 0}, shape, shape, "bpFloats"); readerEngine.Get(bpDoubles, myDoubles.data(), adios2::Mode::Sync); - VerifyData(myDoubles.data(), step, {0, 0, 0}, shape, shape, - "bpDoubles"); + VerifyData(myDoubles.data(), step, {0, 0, 0}, shape, shape, "bpDoubles"); readerEngine.Get(bpComplexes, myComplexes.data(), adios2::Mode::Sync); - VerifyData(myComplexes.data(), step, {0, 0, 0}, shape, shape, - "bpComplexes"); + VerifyData(myComplexes.data(), step, {0, 0, 0}, shape, shape, "bpComplexes"); readerEngine.Get(bpDComplexes, myDComplexes.data(), adios2::Mode::Sync); - VerifyData(myDComplexes.data(), step, {0, 0, 0}, shape, shape, - "bpDComplexes"); + VerifyData(myDComplexes.data(), step, {0, 0, 0}, shape, shape, "bpDComplexes"); readerEngine.EndStep(); } readerEngine.Close(); } -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t rows, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t rows, + const adios2::Params &engineParams, const std::string &name) { size_t datasize = 1; for (const auto &i : count) @@ -155,21 +144,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto bpChars = io.DefineVariable("bpChars", shape, start, count); - auto bpUChars = - io.DefineVariable("bpUChars", shape, start, count); + auto bpUChars = io.DefineVariable("bpUChars", shape, start, count); auto bpShorts = io.DefineVariable("bpShorts", shape, start, count); - auto bpUShorts = - io.DefineVariable("bpUShorts", shape, start, count); + auto bpUShorts = io.DefineVariable("bpUShorts", shape, start, count); auto bpInts = io.DefineVariable("bpInts", shape, start, count); - auto bpUInts = - io.DefineVariable("bpUInts", shape, start, count); + auto bpUInts = io.DefineVariable("bpUInts", shape, start, count); auto bpFloats = io.DefineVariable("bpFloats", shape, start, count); - auto bpDoubles = - io.DefineVariable("bpDoubles", shape, start, count); - auto bpComplexes = io.DefineVariable>( - "bpComplexes", shape, start, count); - auto bpDComplexes = io.DefineVariable>( - "bpDComplexes", shape, start, count); + auto bpDoubles = io.DefineVariable("bpDoubles", shape, start, count); + auto bpComplexes = io.DefineVariable>("bpComplexes", shape, start, count); + auto bpDComplexes = + io.DefineVariable>("bpDComplexes", shape, start, count); adios2::Engine writerEngine = io.Open(name, adios2::Mode::Write); for (size_t step = 0; step < 10; step++) @@ -207,10 +191,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, writerEngine.Put(bpUInts, myUInts.data(), adios2::Mode::Sync); writerEngine.Put(bpFloats, myFloats.data(), adios2::Mode::Sync); writerEngine.Put(bpDoubles, myDoubles.data(), adios2::Mode::Sync); - writerEngine.Put(bpComplexes, myComplexes.data(), - adios2::Mode::Sync); - writerEngine.Put(bpDComplexes, myDComplexes.data(), - adios2::Mode::Sync); + writerEngine.Put(bpComplexes, myComplexes.data(), adios2::Mode::Sync); + writerEngine.Put(bpDComplexes, myDComplexes.data(), adios2::Mode::Sync); } writerEngine.EndStep(); } diff --git a/testing/adios2/engine/mhs/TestMhsSingleRank.cpp b/testing/adios2/engine/mhs/TestMhsSingleRank.cpp index 14b4ba3c31..e574503961 100644 --- a/testing/adios2/engine/mhs/TestMhsSingleRank.cpp +++ b/testing/adios2/engine/mhs/TestMhsSingleRank.cpp @@ -78,9 +78,8 @@ void VerifyData(const T *data, const size_t rows, const Dims &shape) } } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t rows, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t rows, + const adios2::Params &engineParams, const std::string &name) { #if ADIOS2_USE_MPI adios2::ADIOS adios(MPI_COMM_WORLD); @@ -118,17 +117,13 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, ASSERT_EQ(vars.size(), 10); adios2::Variable bpChars = io.InquireVariable("bpChars"); - adios2::Variable bpUChars = - io.InquireVariable("bpUChars"); + adios2::Variable bpUChars = io.InquireVariable("bpUChars"); adios2::Variable bpShorts = io.InquireVariable("bpShorts"); - adios2::Variable bpUShorts = - io.InquireVariable("bpUShorts"); + adios2::Variable bpUShorts = io.InquireVariable("bpUShorts"); adios2::Variable bpInts = io.InquireVariable("bpInts"); - adios2::Variable bpUInts = - io.InquireVariable("bpUInts"); + adios2::Variable bpUInts = io.InquireVariable("bpUInts"); adios2::Variable bpFloats = io.InquireVariable("bpFloats"); - adios2::Variable bpDoubles = - io.InquireVariable("bpDoubles"); + adios2::Variable bpDoubles = io.InquireVariable("bpDoubles"); adios2::Variable> bpComplexes = io.InquireVariable>("bpComplexes"); adios2::Variable> bpDComplexes = @@ -170,9 +165,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, readerEngine.Close(); } -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t rows, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t rows, + const adios2::Params &engineParams, const std::string &name) { size_t datasize = 1; for (const auto &i : count) @@ -199,21 +193,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto bpChars = io.DefineVariable("bpChars", shape, start, count); - auto bpUChars = - io.DefineVariable("bpUChars", shape, start, count); + auto bpUChars = io.DefineVariable("bpUChars", shape, start, count); auto bpShorts = io.DefineVariable("bpShorts", shape, start, count); - auto bpUShorts = - io.DefineVariable("bpUShorts", shape, start, count); + auto bpUShorts = io.DefineVariable("bpUShorts", shape, start, count); auto bpInts = io.DefineVariable("bpInts", shape, start, count); - auto bpUInts = - io.DefineVariable("bpUInts", shape, start, count); + auto bpUInts = io.DefineVariable("bpUInts", shape, start, count); auto bpFloats = io.DefineVariable("bpFloats", shape, start, count); - auto bpDoubles = - io.DefineVariable("bpDoubles", shape, start, count); - auto bpComplexes = io.DefineVariable>( - "bpComplexes", shape, start, count); - auto bpDComplexes = io.DefineVariable>( - "bpDComplexes", shape, start, count); + auto bpDoubles = io.DefineVariable("bpDoubles", shape, start, count); + auto bpComplexes = io.DefineVariable>("bpComplexes", shape, start, count); + auto bpDComplexes = + io.DefineVariable>("bpDComplexes", shape, start, count); adios2::Engine writerEngine = io.Open(name, adios2::Mode::Write); writerEngine.BeginStep(); for (size_t i = 0; i < rows; ++i) diff --git a/testing/adios2/engine/null/TestNullWriteRead.cpp b/testing/adios2/engine/null/TestNullWriteRead.cpp index 309ec8518c..ce5b457140 100644 --- a/testing/adios2/engine/null/TestNullWriteRead.cpp +++ b/testing/adios2/engine/null/TestNullWriteRead.cpp @@ -55,30 +55,23 @@ TEST_F(NullWriteReadTests, NullWriteRead1D8) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -89,8 +82,8 @@ TEST_F(NullWriteReadTests, NullWriteRead1D8) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); @@ -165,11 +158,9 @@ TEST_F(NullWriteReadTests, NullWriteRead1D8) auto var_i8 = io.InquireVariable("i8"); EXPECT_FALSE(var_i8); - EXPECT_THROW(nullReader.Get(var_iString, IString), - std::invalid_argument); + EXPECT_THROW(nullReader.Get(var_iString, IString), std::invalid_argument); - EXPECT_THROW(nullReader.Get(var_i8, I8.data()), - std::invalid_argument); + EXPECT_THROW(nullReader.Get(var_i8, I8.data()), std::invalid_argument); nullReader.PerformGets(); nullReader.EndStep(); diff --git a/testing/adios2/engine/nullcore/TestNullCoreWrite.cpp b/testing/adios2/engine/nullcore/TestNullCoreWrite.cpp index 94b9eb2df8..4c195b6ae7 100644 --- a/testing/adios2/engine/nullcore/TestNullCoreWrite.cpp +++ b/testing/adios2/engine/nullcore/TestNullCoreWrite.cpp @@ -64,30 +64,23 @@ TEST_F(NullCoreWriteTest, ADIOS2NullCoreWrite1D8) EXPECT_TRUE(var_iString); auto var_i8 = io.DefineVariable("i8", shape, start, count); EXPECT_TRUE(var_i8); - auto var_i16 = - io.DefineVariable("i16", shape, start, count); + auto var_i16 = io.DefineVariable("i16", shape, start, count); EXPECT_TRUE(var_i16); - auto var_i32 = - io.DefineVariable("i32", shape, start, count); + auto var_i32 = io.DefineVariable("i32", shape, start, count); EXPECT_TRUE(var_i32); - auto var_i64 = - io.DefineVariable("i64", shape, start, count); + auto var_i64 = io.DefineVariable("i64", shape, start, count); EXPECT_TRUE(var_i64); auto var_u8 = io.DefineVariable("u8", shape, start, count); EXPECT_TRUE(var_u8); - auto var_u16 = - io.DefineVariable("u16", shape, start, count); + auto var_u16 = io.DefineVariable("u16", shape, start, count); EXPECT_TRUE(var_u16); - auto var_u32 = - io.DefineVariable("u32", shape, start, count); + auto var_u32 = io.DefineVariable("u32", shape, start, count); EXPECT_TRUE(var_u32); - auto var_u64 = - io.DefineVariable("u64", shape, start, count); + auto var_u64 = io.DefineVariable("u64", shape, start, count); EXPECT_TRUE(var_u64); auto var_r32 = io.DefineVariable("r32", shape, start, count); EXPECT_TRUE(var_r32); - auto var_r64 = - io.DefineVariable("r64", shape, start, count); + auto var_r64 = io.DefineVariable("r64", shape, start, count); EXPECT_TRUE(var_r64); } @@ -98,8 +91,8 @@ TEST_F(NullCoreWriteTest, ADIOS2NullCoreWrite1D8) for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - SmallTestData currentTestData = generateNewSmallTestData( - m_TestData, static_cast(step), mpiRank, mpiSize); + SmallTestData currentTestData = + generateNewSmallTestData(m_TestData, static_cast(step), mpiRank, mpiSize); // Retrieve the variables that previously went out of scope auto var_iString = io.InquireVariable("iString"); diff --git a/testing/adios2/engine/skeleton/TestSkeletonReader.cpp b/testing/adios2/engine/skeleton/TestSkeletonReader.cpp index eddc312158..d4c056dc2a 100644 --- a/testing/adios2/engine/skeleton/TestSkeletonReader.cpp +++ b/testing/adios2/engine/skeleton/TestSkeletonReader.cpp @@ -11,8 +11,8 @@ const std::string streamname = "skeleton_stream"; -static void printDataStep(const float *data, const size_t start, - const size_t count, const int rank, const size_t step) +static void printDataStep(const float *data, const size_t start, const size_t count, const int rank, + const size_t step) { std::ofstream myfile; std::string filename = "data." + std::to_string(rank); @@ -25,11 +25,10 @@ static void printDataStep(const float *data, const size_t start, myfile.open(filename, std::ios::app); } - myfile << "rank=" << rank << " size=" << count << " offsets=" << start - << " step=" << step << std::endl; - - myfile << " step row columns " << start << "..." << start + count - 1 + myfile << "rank=" << rank << " size=" << count << " offsets=" << start << " step=" << step << std::endl; + + myfile << " step row columns " << start << "..." << start + count - 1 << std::endl; myfile << " "; for (size_t j = 0; j < count; j++) { @@ -43,8 +42,7 @@ static void printDataStep(const float *data, const size_t start, myfile << std::setw(5) << step << std::setw(5) << start + i; for (size_t j = 0; j < count; j++) { - myfile << std::setw(9) << std::setprecision(4) - << data[i * count + j]; + myfile << std::setw(9) << std::setprecision(4) << data[i * count + j]; } myfile << std::endl; } @@ -92,8 +90,7 @@ int main(int argc, char *argv[]) while (true) { - adios2::StepStatus status = - reader.BeginStep(adios2::StepMode::Read, 60.0f); + adios2::StepStatus status = reader.BeginStep(adios2::StepMode::Read, 60.0f); if (status != adios2::StepStatus::OK) { break; @@ -105,17 +102,15 @@ int main(int argc, char *argv[]) vMyArray = io.InquireVariable("myArray"); if (!vMyArray) { - std::cout - << "Missing 'myArray' variable. The Skeleton reader " - "engine must retrieve variables from the writer and " - "create Variable objects before they can be " - "inquired\n"; + std::cout << "Missing 'myArray' variable. The Skeleton reader " + "engine must retrieve variables from the writer and " + "create Variable objects before they can be " + "inquired\n"; // Let's fake the read from now on // so that we can test the rest of the read API gndx = (size_t)nproc; adios2::Variable varArray = io.DefineVariable( - "myArray", {gndx}, {gndx / (size_t)nproc}, - {gndx / (size_t)nproc}); + "myArray", {gndx}, {gndx / (size_t)nproc}, {gndx / (size_t)nproc}); (void)varArray; adios2::Variable varSyncString = @@ -157,8 +152,7 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; retval = 1; } diff --git a/testing/adios2/engine/skeleton/TestSkeletonWriter.cpp b/testing/adios2/engine/skeleton/TestSkeletonWriter.cpp index 53e312c189..a57900f86b 100644 --- a/testing/adios2/engine/skeleton/TestSkeletonWriter.cpp +++ b/testing/adios2/engine/skeleton/TestSkeletonWriter.cpp @@ -61,9 +61,9 @@ int main(int argc, char *argv[]) io.SetEngine("Skeleton"); io.SetParameter("VerBose", "5"); - adios2::Variable varArray = io.DefineVariable( - "myArray", {(unsigned int)nproc * ndx}, {(unsigned int)rank * ndx}, - {ndx}, adios2::ConstantDims); + adios2::Variable varArray = + io.DefineVariable("myArray", {(unsigned int)nproc * ndx}, + {(unsigned int)rank * ndx}, {ndx}, adios2::ConstantDims); adios2::Variable varSyncString = io.DefineVariable("mySyncString"); @@ -87,8 +87,7 @@ int main(int argc, char *argv[]) } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; retval = 1; } diff --git a/testing/adios2/engine/ssc/TestSsc3DMemSelect.cpp b/testing/adios2/engine/ssc/TestSsc3DMemSelect.cpp index 11e2a5bb0a..e182c1b360 100644 --- a/testing/adios2/engine/ssc/TestSsc3DMemSelect.cpp +++ b/testing/adios2/engine/ssc/TestSsc3DMemSelect.cpp @@ -21,17 +21,14 @@ MPI_Comm mpiComm; size_t steps = 100; Dims shape = {4, 4, 4}; -std::vector global_data = {0, 1, 2, 3, 10, 11, 12, 13, - 20, 21, 22, 23, 30, 31, 32, 33, +std::vector global_data = { + 0, 1, 2, 3, 10, 11, 12, 13, 20, 21, 22, 23, 30, 31, 32, 33, - 100, 101, 102, 103, 110, 111, 112, 113, - 120, 121, 122, 123, 130, 131, 132, 133, + 100, 101, 102, 103, 110, 111, 112, 113, 120, 121, 122, 123, 130, 131, 132, 133, - 200, 201, 202, 203, 210, 211, 212, 213, - 220, 221, 222, 223, 230, 231, 232, 233, + 200, 201, 202, 203, 210, 211, 212, 213, 220, 221, 222, 223, 230, 231, 232, 233, - 300, 301, 302, 303, 310, 311, 312, 313, - 320, 321, 322, 323, 330, 331, 332, 333}; + 300, 301, 302, 303, 310, 311, 312, 313, 320, 321, 322, 323, 330, 331, 332, 333}; Dims start = {1, 2, 1}; Dims count = {2, 1, 2}; @@ -52,11 +49,9 @@ class SscEngineTest : public ::testing::Test }; template -void PrintData(const T *data, const size_t step, const Dims &start, - const Dims &count) +void PrintData(const T *data, const size_t step, const Dims &start, const Dims &count) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); std::cout << "Step: " << step << " Size:" << size << "\n"; size_t printsize = 128; @@ -79,11 +74,10 @@ void PrintData(const T *data, const size_t step, const Dims &start, std::cout << "]" << std::endl; } -void VerifyData(const int *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape) +void VerifyData(const int *data, size_t step, const Dims &start, const Dims &count, + const Dims &shape) { - size_t size = std::accumulate(count.begin(), count.end(), 1, - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), 1, std::multiplies()); bool compressed = false; for (size_t i = 0; i < size; ++i) { @@ -169,8 +163,7 @@ TEST_F(SscEngineTest, TestSsc3DMemSelect) MPI_Barrier(MPI_COMM_WORLD); } { - adios2::Params engineParams = {{"Verbose", "0"}, - {"EngineMode", "naive"}}; + adios2::Params engineParams = {{"Verbose", "0"}, {"EngineMode", "naive"}}; int worldRank, worldSize; MPI_Comm_rank(MPI_COMM_WORLD, &worldRank); MPI_Comm_size(MPI_COMM_WORLD, &worldSize); diff --git a/testing/adios2/engine/ssc/TestSsc7d.cpp b/testing/adios2/engine/ssc/TestSsc7d.cpp index a26dd5e513..a0111c6f95 100644 --- a/testing/adios2/engine/ssc/TestSsc7d.cpp +++ b/testing/adios2/engine/ssc/TestSsc7d.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open(name, adios2::Mode::Write); engine.LockWriterDefinitions(); @@ -89,9 +82,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -99,9 +91,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, io.SetParameters(engineParams); adios2::Engine engine = io.Open(name, adios2::Mode::Read); - size_t datasize = - std::accumulate(shape.begin(), shape.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(shape.begin(), shape.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -123,21 +114,16 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 10); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = @@ -153,32 +139,23 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, engine.Get(varDoubles, myDoubles.data(), adios2::Mode::Sync); engine.Get(varComplexes, myComplexes.data(), adios2::Mode::Sync); engine.Get(varDComplexes, myDComplexes.data(), adios2::Mode::Sync); - VerifyData(myChars.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myUChars.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myShorts.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myUShorts.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myInts.data(), currentStep, Dims(shape.size(), 0), shape, - shape, mpiRank); - VerifyData(myUInts.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myFloats.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myDoubles.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myComplexes.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myDComplexes.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); + VerifyData(myChars.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myInts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myFloats.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, Dims(shape.size(), 0), shape, shape, + mpiRank); + VerifyData(myDComplexes.data(), currentStep, Dims(shape.size(), 0), shape, shape, + mpiRank); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } @@ -223,8 +200,7 @@ TEST_F(SscEngineTest, TestSsc7d) { std::string filename = "TestSsc7dNaive"; - adios2::Params engineParams = {{"Verbose", "0"}, - {"EngineMode", "naive"}}; + adios2::Params engineParams = {{"Verbose", "0"}, {"EngineMode", "naive"}}; int worldRank, worldSize; MPI_Comm_rank(MPI_COMM_WORLD, &worldRank); diff --git a/testing/adios2/engine/ssc/TestSscBase.cpp b/testing/adios2/engine/ssc/TestSscBase.cpp index 84f65269cf..ca6fbac6d1 100644 --- a/testing/adios2/engine/ssc/TestSscBase.cpp +++ b/testing/adios2/engine/ssc/TestSscBase.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varIntScalar = io.DefineVariable("varIntScalar"); auto varString = io.DefineVariable("varString"); io.DefineAttribute("AttInt", 110); @@ -94,9 +87,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -104,9 +96,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, io.SetParameters(engineParams); adios2::Engine engine = io.Open(name, adios2::Mode::Read); - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -126,8 +117,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, if (status == adios2::StepStatus::OK) { auto varIntScalar = io.InquireVariable("varIntScalar"); - auto blocksInfo = - engine.BlocksInfo(varIntScalar, engine.CurrentStep()); + auto blocksInfo = engine.BlocksInfo(varIntScalar, engine.CurrentStep()); for (const auto &bi : blocksInfo) { @@ -140,27 +130,21 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 12); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varString = - io.InquireVariable("varString"); + adios2::Variable varString = io.InquireVariable("varString"); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -180,44 +164,30 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, engine.Get(varInts, myInts.data(), adios2::Mode::Sync); engine.Get(varUInts, myUInts.data(), adios2::Mode::Sync); - VerifyData(myChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, start, count, shape, mpiRank); engine.Get(varFloats, myFloats.data(), adios2::Mode::Deferred); engine.Get(varDoubles, myDoubles.data(), adios2::Mode::Deferred); - engine.Get(varComplexes, myComplexes.data(), - adios2::Mode::Deferred); - engine.Get(varDComplexes, myDComplexes.data(), - adios2::Mode::Deferred); + engine.Get(varComplexes, myComplexes.data(), adios2::Mode::Deferred); + engine.Get(varDComplexes, myDComplexes.data(), adios2::Mode::Deferred); engine.PerformGets(); - VerifyData(myFloats.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDComplexes.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myFloats.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, start, count, shape, mpiRank); std::string s; engine.Get(varString, s); engine.PerformGets(); ASSERT_EQ(s, "sample string sample string sample string"); - ASSERT_EQ(varString.Min(), - "sample string sample string sample string"); - ASSERT_EQ(varString.Max(), - "sample string sample string sample string"); + ASSERT_EQ(varString.Min(), "sample string sample string sample string"); + ASSERT_EQ(varString.Max(), "sample string sample string sample string"); int i; engine.Get(varIntScalar, &i); @@ -227,8 +197,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } @@ -267,8 +236,7 @@ TEST_F(SscEngineTest, TestSscBase) } { std::string filename = "TestSscBaseNaive"; - adios2::Params engineParams = {{"Verbose", "0"}, - {"EngineMode", "naive"}}; + adios2::Params engineParams = {{"Verbose", "0"}, {"EngineMode", "naive"}}; int worldRank, worldSize; MPI_Comm_rank(MPI_COMM_WORLD, &worldRank); MPI_Comm_size(MPI_COMM_WORLD, &worldSize); diff --git a/testing/adios2/engine/ssc/TestSscBaseThreading.cpp b/testing/adios2/engine/ssc/TestSscBaseThreading.cpp index 5533909c41..6701ed8ebd 100644 --- a/testing/adios2/engine/ssc/TestSscBaseThreading.cpp +++ b/testing/adios2/engine/ssc/TestSscBaseThreading.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varIntScalar = io.DefineVariable("varIntScalar"); auto varString = io.DefineVariable("varString"); io.DefineAttribute("AttInt", 110); @@ -93,9 +86,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -103,9 +95,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, io.SetParameters(engineParams); adios2::Engine engine = io.Open(name, adios2::Mode::Read); - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -123,8 +114,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, if (status == adios2::StepStatus::OK) { auto varIntScalar = io.InquireVariable("varIntScalar"); - auto blocksInfo = - engine.BlocksInfo(varIntScalar, engine.CurrentStep()); + auto blocksInfo = engine.BlocksInfo(varIntScalar, engine.CurrentStep()); for (const auto &bi : blocksInfo) { @@ -137,27 +127,21 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 12); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varString = - io.InquireVariable("varString"); + adios2::Variable varString = io.InquireVariable("varString"); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -183,37 +167,24 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, std::string s; engine.Get(varString, s, adios2::Mode::Sync); ASSERT_EQ(s, "sample string sample string sample string"); - ASSERT_EQ(varString.Min(), - "sample string sample string sample string"); - ASSERT_EQ(varString.Max(), - "sample string sample string sample string"); - - VerifyData(myChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myFloats.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDComplexes.data(), currentStep, start, count, shape, - mpiRank); + ASSERT_EQ(varString.Min(), "sample string sample string sample string"); + ASSERT_EQ(varString.Max(), "sample string sample string sample string"); + + VerifyData(myChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myFloats.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, start, count, shape, mpiRank); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } @@ -274,9 +245,7 @@ int main(int argc, char **argv) } else { - std::cout - << "MPI does not support multi-thread, skipping SSC threading test" - << std::endl; + std::cout << "MPI does not support multi-thread, skipping SSC threading test" << std::endl; } MPI_Finalize(); diff --git a/testing/adios2/engine/ssc/TestSscBaseUnlocked.cpp b/testing/adios2/engine/ssc/TestSscBaseUnlocked.cpp index 8a891ddad0..3bd9d8b189 100644 --- a/testing/adios2/engine/ssc/TestSscBaseUnlocked.cpp +++ b/testing/adios2/engine/ssc/TestSscBaseUnlocked.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varIntScalar = io.DefineVariable("varIntScalar"); auto varString = io.DefineVariable("varString"); io.DefineAttribute("AttInt", 110); @@ -93,9 +86,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -103,9 +95,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, io.SetParameters(engineParams); adios2::Engine engine = io.Open(name, adios2::Mode::Read); - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -123,8 +114,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, if (status == adios2::StepStatus::OK) { auto varIntScalar = io.InquireVariable("varIntScalar"); - auto blocksInfo = - engine.BlocksInfo(varIntScalar, engine.CurrentStep()); + auto blocksInfo = engine.BlocksInfo(varIntScalar, engine.CurrentStep()); for (const auto &bi : blocksInfo) { @@ -137,27 +127,21 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 12); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varString = - io.InquireVariable("varString"); + adios2::Variable varString = io.InquireVariable("varString"); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -183,37 +167,24 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, std::string s; engine.Get(varString, s, adios2::Mode::Sync); ASSERT_EQ(s, "sample string sample string sample string"); - ASSERT_EQ(varString.Min(), - "sample string sample string sample string"); - ASSERT_EQ(varString.Max(), - "sample string sample string sample string"); - - VerifyData(myChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myFloats.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDComplexes.data(), currentStep, start, count, shape, - mpiRank); + ASSERT_EQ(varString.Min(), "sample string sample string sample string"); + ASSERT_EQ(varString.Max(), "sample string sample string sample string"); + + VerifyData(myChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myFloats.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, start, count, shape, mpiRank); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } diff --git a/testing/adios2/engine/ssc/TestSscCommon.h b/testing/adios2/engine/ssc/TestSscCommon.h index 1eb77250b4..0f89aae178 100644 --- a/testing/adios2/engine/ssc/TestSscCommon.h +++ b/testing/adios2/engine/ssc/TestSscCommon.h @@ -9,14 +9,12 @@ int printed_lines = 0; int to_print_lines = 0; template -void PrintData(const T *data, const size_t step, const Dims &start, - const Dims &count, const int rank) +void PrintData(const T *data, const size_t step, const Dims &start, const Dims &count, + const int rank) { - size_t size = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); - std::cout << "Rank: " << rank << " Step: " << step << " Size:" << size - << "\n"; + size_t size = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); + std::cout << "Rank: " << rank << " Step: " << step << " Size:" << size << "\n"; size_t printsize = 128; if (size < printsize) @@ -60,23 +58,20 @@ void GenDataRecursive(std::vector start, std::vector count, for (size_t j = 0; j < count_next[0]; j++) { vec[i0 * count_next[0] + j] = { - static_cast(z * shape_next[0] + (j + start_next[0]) + - step), - 1}; + static_cast(z * shape_next[0] + (j + start_next[0]) + step), 1}; } } else { - GenDataRecursive(start_next, count_next, shape_next, i0, z, vec, - step); + GenDataRecursive(start_next, count_next, shape_next, i0, z, vec, step); } } } template void GenDataRecursive(std::vector start, std::vector count, - std::vector shape, size_t n0, size_t y, - std::vector &vec, const size_t step) + std::vector shape, size_t n0, size_t y, std::vector &vec, + const size_t step) { for (size_t i = 0; i < count[0]; i++) { @@ -94,37 +89,33 @@ void GenDataRecursive(std::vector start, std::vector count, { for (size_t j = 0; j < count_next[0]; j++) { - vec[i0 * count_next[0] + j] = static_cast( - z * shape_next[0] + (j + start_next[0]) + step); + vec[i0 * count_next[0] + j] = + static_cast(z * shape_next[0] + (j + start_next[0]) + step); } } else { - GenDataRecursive(start_next, count_next, shape_next, i0, z, vec, - step); + GenDataRecursive(start_next, count_next, shape_next, i0, z, vec, step); } } } template -void GenData(std::vector &vec, const size_t step, - const std::vector &start, const std::vector &count, - const std::vector &shape) +void GenData(std::vector &vec, const size_t step, const std::vector &start, + const std::vector &count, const std::vector &shape) { - size_t total_size = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t total_size = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); vec.resize(total_size); GenDataRecursive(start, count, shape, 0, 0, vec, step); } template -void VerifyData(const std::complex *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape) +void VerifyData(const std::complex *data, size_t step, const Dims &start, const Dims &count, + const Dims &shape) { - size_t size = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector> tmpdata(size); GenData(tmpdata, step, start, count, shape); for (size_t i = 0; i < size; ++i) @@ -139,12 +130,11 @@ void VerifyData(const std::complex *data, size_t step, const Dims &start, } template -void VerifyData(const T *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape, const int rank) +void VerifyData(const T *data, size_t step, const Dims &start, const Dims &count, const Dims &shape, + const int rank) { - size_t size = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); bool compressed = false; std::vector tmpdata(size); if (printed_lines < to_print_lines) diff --git a/testing/adios2/engine/ssc/TestSscLockBeforeEndStep.cpp b/testing/adios2/engine/ssc/TestSscLockBeforeEndStep.cpp index 9202800d00..ff006cc965 100644 --- a/testing/adios2/engine/ssc/TestSscLockBeforeEndStep.cpp +++ b/testing/adios2/engine/ssc/TestSscLockBeforeEndStep.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varIntScalar = io.DefineVariable("varIntScalar"); auto varString = io.DefineVariable("varString"); io.DefineAttribute("AttInt", 110); @@ -94,9 +87,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -104,9 +96,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, io.SetParameters(engineParams); adios2::Engine engine = io.Open(name, adios2::Mode::Read); - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -124,8 +115,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, if (status == adios2::StepStatus::OK) { auto varIntScalar = io.InquireVariable("varIntScalar"); - auto blocksInfo = - engine.BlocksInfo(varIntScalar, engine.CurrentStep()); + auto blocksInfo = engine.BlocksInfo(varIntScalar, engine.CurrentStep()); for (const auto &bi : blocksInfo) { @@ -138,27 +128,21 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 12); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varString = - io.InquireVariable("varString"); + adios2::Variable varString = io.InquireVariable("varString"); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -184,42 +168,29 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, std::string s; engine.Get(varString, s, adios2::Mode::Sync); ASSERT_EQ(s, "sample string sample string sample string"); - ASSERT_EQ(varString.Min(), - "sample string sample string sample string"); - ASSERT_EQ(varString.Max(), - "sample string sample string sample string"); + ASSERT_EQ(varString.Min(), "sample string sample string sample string"); + ASSERT_EQ(varString.Max(), "sample string sample string sample string"); int i; engine.Get(varIntScalar, &i, adios2::Mode::Sync); ASSERT_EQ(i, currentStep); - VerifyData(myChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myFloats.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDComplexes.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myFloats.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, start, count, shape, mpiRank); engine.LockReaderSelections(); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } diff --git a/testing/adios2/engine/ssc/TestSscMoreReadersThanWriters.cpp b/testing/adios2/engine/ssc/TestSscMoreReadersThanWriters.cpp index d157d802e3..157f4865db 100644 --- a/testing/adios2/engine/ssc/TestSscMoreReadersThanWriters.cpp +++ b/testing/adios2/engine/ssc/TestSscMoreReadersThanWriters.cpp @@ -23,13 +23,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("ssc"); @@ -45,21 +43,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open(name, adios2::Mode::Write); engine.LockWriterDefinitions(); @@ -91,9 +84,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -102,9 +94,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, adios2::Engine engine = io.Open(name, adios2::Mode::Read); engine.LockReaderSelections(); - size_t datasize = - std::accumulate(shape.begin(), shape.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(shape.begin(), shape.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -124,21 +115,16 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 10); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = @@ -154,32 +140,23 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, engine.Get(varDoubles, myDoubles.data(), adios2::Mode::Sync); engine.Get(varComplexes, myComplexes.data(), adios2::Mode::Sync); engine.Get(varDComplexes, myDComplexes.data(), adios2::Mode::Sync); - VerifyData(myChars.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myUChars.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myShorts.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myUShorts.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myInts.data(), currentStep, Dims(shape.size(), 0), shape, - shape, mpiRank); - VerifyData(myUInts.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myFloats.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myDoubles.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myComplexes.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myDComplexes.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); + VerifyData(myChars.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myInts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myFloats.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, Dims(shape.size(), 0), shape, shape, + mpiRank); + VerifyData(myDComplexes.data(), currentStep, Dims(shape.size(), 0), shape, shape, + mpiRank); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } @@ -240,8 +217,7 @@ TEST_F(SscEngineTest, TestSscMoreReadersThanWriters) { std::string filename = "TestSscMoreReadersThanWritersNaive"; - adios2::Params engineParams = {{"Verbose", "0"}, - {"EngineMode", "naive"}}; + adios2::Params engineParams = {{"Verbose", "0"}, {"EngineMode", "naive"}}; int worldRank, worldSize; Dims start, count, shape; diff --git a/testing/adios2/engine/ssc/TestSscMoreWritersThanReaders.cpp b/testing/adios2/engine/ssc/TestSscMoreWritersThanReaders.cpp index 678502af4b..06fe6e6887 100644 --- a/testing/adios2/engine/ssc/TestSscMoreWritersThanReaders.cpp +++ b/testing/adios2/engine/ssc/TestSscMoreWritersThanReaders.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open(name, adios2::Mode::Write); engine.LockWriterDefinitions(); @@ -89,9 +82,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -100,9 +92,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, adios2::Engine engine = io.Open(name, adios2::Mode::Read); engine.LockReaderSelections(); - size_t datasize = - std::accumulate(shape.begin(), shape.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(shape.begin(), shape.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -122,21 +113,16 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 10); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = @@ -152,32 +138,23 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, engine.Get(varDoubles, myDoubles.data(), adios2::Mode::Sync); engine.Get(varComplexes, myComplexes.data(), adios2::Mode::Sync); engine.Get(varDComplexes, myDComplexes.data(), adios2::Mode::Sync); - VerifyData(myChars.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myUChars.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myShorts.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myUShorts.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myInts.data(), currentStep, Dims(shape.size(), 0), shape, - shape, mpiRank); - VerifyData(myUInts.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myFloats.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myDoubles.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myComplexes.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myDComplexes.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); + VerifyData(myChars.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myInts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myFloats.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, Dims(shape.size(), 0), shape, shape, + mpiRank); + VerifyData(myDComplexes.data(), currentStep, Dims(shape.size(), 0), shape, shape, + mpiRank); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } diff --git a/testing/adios2/engine/ssc/TestSscNoAttributes.cpp b/testing/adios2/engine/ssc/TestSscNoAttributes.cpp index c1d5f2b7b2..9ea952e833 100644 --- a/testing/adios2/engine/ssc/TestSscNoAttributes.cpp +++ b/testing/adios2/engine/ssc/TestSscNoAttributes.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("staging"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); adios2::Engine engine = io.Open(name, adios2::Mode::Write); engine.LockWriterDefinitions(); for (size_t i = 0; i < steps; ++i) @@ -88,9 +81,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("staging"); @@ -99,9 +91,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, adios2::Engine engine = io.Open(name, adios2::Mode::Read); engine.LockReaderSelections(); - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -122,21 +113,16 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, ASSERT_EQ(vars.size(), 10); size_t currentStep = engine.CurrentStep(); // ASSERT_EQ(i, currentStep); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = @@ -163,32 +149,21 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, engine.Get(varDoubles, myDoubles.data(), adios2::Mode::Sync); engine.Get(varComplexes, myComplexes.data(), adios2::Mode::Sync); engine.Get(varDComplexes, myDComplexes.data(), adios2::Mode::Sync); - VerifyData(myChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myFloats.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDComplexes.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myFloats.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, start, count, shape, mpiRank); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } diff --git a/testing/adios2/engine/ssc/TestSscNoSelection.cpp b/testing/adios2/engine/ssc/TestSscNoSelection.cpp index 810c150240..4ce710429b 100644 --- a/testing/adios2/engine/ssc/TestSscNoSelection.cpp +++ b/testing/adios2/engine/ssc/TestSscNoSelection.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open(name, adios2::Mode::Write); engine.LockWriterDefinitions(); @@ -89,9 +82,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -100,9 +92,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, adios2::Engine engine = io.Open(name, adios2::Mode::Read); engine.LockReaderSelections(); - size_t datasize = - std::accumulate(shape.begin(), shape.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(shape.begin(), shape.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -122,21 +113,16 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 10); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = @@ -152,32 +138,23 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, engine.Get(varDoubles, myDoubles.data(), adios2::Mode::Sync); engine.Get(varComplexes, myComplexes.data(), adios2::Mode::Sync); engine.Get(varDComplexes, myDComplexes.data(), adios2::Mode::Sync); - VerifyData(myChars.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myUChars.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myShorts.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myUShorts.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myInts.data(), currentStep, Dims(shape.size(), 0), shape, - shape, mpiRank); - VerifyData(myUInts.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myFloats.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myDoubles.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myComplexes.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); - VerifyData(myDComplexes.data(), currentStep, Dims(shape.size(), 0), - shape, shape, mpiRank); + VerifyData(myChars.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myInts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myFloats.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, Dims(shape.size(), 0), shape, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, Dims(shape.size(), 0), shape, shape, + mpiRank); + VerifyData(myDComplexes.data(), currentStep, Dims(shape.size(), 0), shape, shape, + mpiRank); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } diff --git a/testing/adios2/engine/ssc/TestSscOnlyOneStep.cpp b/testing/adios2/engine/ssc/TestSscOnlyOneStep.cpp index e5e77e0f10..a09d4dadd2 100644 --- a/testing/adios2/engine/ssc/TestSscOnlyOneStep.cpp +++ b/testing/adios2/engine/ssc/TestSscOnlyOneStep.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varIntScalar = io.DefineVariable("varIntScalar"); auto varString = io.DefineVariable("varString"); io.DefineAttribute("AttInt", 110); @@ -94,9 +87,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -105,9 +97,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, adios2::Engine engine = io.Open(name, adios2::Mode::Read); engine.LockReaderSelections(); - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -125,8 +116,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, if (status == adios2::StepStatus::OK) { auto varIntScalar = io.InquireVariable("varIntScalar"); - auto blocksInfo = - engine.BlocksInfo(varIntScalar, engine.CurrentStep()); + auto blocksInfo = engine.BlocksInfo(varIntScalar, engine.CurrentStep()); for (const auto &bi : blocksInfo) { @@ -139,27 +129,21 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 12); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varString = - io.InquireVariable("varString"); + adios2::Variable varString = io.InquireVariable("varString"); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -185,41 +169,28 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, std::string s; engine.Get(varString, s, adios2::Mode::Sync); ASSERT_EQ(s, "sample string sample string sample string"); - ASSERT_EQ(varString.Min(), - "sample string sample string sample string"); - ASSERT_EQ(varString.Max(), - "sample string sample string sample string"); + ASSERT_EQ(varString.Min(), "sample string sample string sample string"); + ASSERT_EQ(varString.Max(), "sample string sample string sample string"); int i; engine.Get(varIntScalar, &i, adios2::Mode::Sync); ASSERT_EQ(i, currentStep); - VerifyData(myChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myFloats.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDComplexes.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myFloats.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, start, count, shape, mpiRank); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } diff --git a/testing/adios2/engine/ssc/TestSscOnlyTwoSteps.cpp b/testing/adios2/engine/ssc/TestSscOnlyTwoSteps.cpp index e10aaab8b6..f3cff86f80 100644 --- a/testing/adios2/engine/ssc/TestSscOnlyTwoSteps.cpp +++ b/testing/adios2/engine/ssc/TestSscOnlyTwoSteps.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varIntScalar = io.DefineVariable("varIntScalar"); auto varString = io.DefineVariable("varString"); io.DefineAttribute("AttInt", 110); @@ -94,9 +87,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -105,9 +97,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, adios2::Engine engine = io.Open(name, adios2::Mode::Read); engine.LockReaderSelections(); - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -125,8 +116,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, if (status == adios2::StepStatus::OK) { auto varIntScalar = io.InquireVariable("varIntScalar"); - auto blocksInfo = - engine.BlocksInfo(varIntScalar, engine.CurrentStep()); + auto blocksInfo = engine.BlocksInfo(varIntScalar, engine.CurrentStep()); for (const auto &bi : blocksInfo) { @@ -139,27 +129,21 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 12); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varString = - io.InquireVariable("varString"); + adios2::Variable varString = io.InquireVariable("varString"); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -185,41 +169,28 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, std::string s; engine.Get(varString, s, adios2::Mode::Sync); ASSERT_EQ(s, "sample string sample string sample string"); - ASSERT_EQ(varString.Min(), - "sample string sample string sample string"); - ASSERT_EQ(varString.Max(), - "sample string sample string sample string"); + ASSERT_EQ(varString.Min(), "sample string sample string sample string"); + ASSERT_EQ(varString.Max(), "sample string sample string sample string"); int i; engine.Get(varIntScalar, &i, adios2::Mode::Sync); ASSERT_EQ(i, currentStep); - VerifyData(myChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myFloats.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDComplexes.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myFloats.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, start, count, shape, mpiRank); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } diff --git a/testing/adios2/engine/ssc/TestSscReaderMultiblock.cpp b/testing/adios2/engine/ssc/TestSscReaderMultiblock.cpp index a1119fb52f..9b03fc5b0c 100644 --- a/testing/adios2/engine/ssc/TestSscReaderMultiblock.cpp +++ b/testing/adios2/engine/ssc/TestSscReaderMultiblock.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varIntScalar = io.DefineVariable("varIntScalar"); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open(name, adios2::Mode::Write); @@ -143,9 +136,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -154,9 +146,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, adios2::Engine engine = io.Open(name, adios2::Mode::Read); engine.LockReaderSelections(); - size_t datasize = - std::accumulate(shape.begin(), shape.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(shape.begin(), shape.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -176,21 +167,16 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 11); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = @@ -225,26 +211,16 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, engine.Get(varDoubles, myDoubles.data(), adios2::Mode::Sync); engine.Get(varComplexes, myComplexes.data(), adios2::Mode::Sync); engine.Get(varDComplexes, myDComplexes.data(), adios2::Mode::Sync); - VerifyData(myChars.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myFloats.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, startTmp, countTmp, - shape, mpiRank); - VerifyData(myDComplexes.data(), currentStep, startTmp, countTmp, - shape, mpiRank); + VerifyData(myChars.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myInts.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myFloats.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, startTmp, countTmp, shape, mpiRank); startTmp[0] = mpiRank * 2 + 1; countTmp[0] = 1; @@ -268,33 +244,22 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, engine.Get(varDoubles, myDoubles.data(), adios2::Mode::Sync); engine.Get(varComplexes, myComplexes.data(), adios2::Mode::Sync); engine.Get(varDComplexes, myDComplexes.data(), adios2::Mode::Sync); - VerifyData(myChars.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myFloats.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, startTmp, countTmp, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, startTmp, countTmp, - shape, mpiRank); - VerifyData(myDComplexes.data(), currentStep, startTmp, countTmp, - shape, mpiRank); + VerifyData(myChars.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myInts.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myFloats.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, startTmp, countTmp, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, startTmp, countTmp, shape, mpiRank); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } @@ -308,8 +273,7 @@ TEST_F(SscEngineTest, TestSscReaderMultiblock) { { std::string filename = "TestSscReaderMultiblockNaive"; - adios2::Params engineParams = {{"Verbose", "0"}, - {"EngineMode", "naive"}}; + adios2::Params engineParams = {{"Verbose", "0"}, {"EngineMode", "naive"}}; int worldRank, worldSize; MPI_Comm_rank(MPI_COMM_WORLD, &worldRank); diff --git a/testing/adios2/engine/ssc/TestSscSingleStep.cpp b/testing/adios2/engine/ssc/TestSscSingleStep.cpp index 0c7cbd528a..3e92d12e34 100644 --- a/testing/adios2/engine/ssc/TestSscSingleStep.cpp +++ b/testing/adios2/engine/ssc/TestSscSingleStep.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varIntScalar = io.DefineVariable("varIntScalar"); auto varString = io.DefineVariable("varString"); io.DefineAttribute("AttInt", 110); @@ -94,9 +87,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -104,9 +96,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, io.SetParameters(engineParams); adios2::Engine engine = io.Open(name, adios2::Mode::Read); - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -129,8 +120,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, { ++readSteps; auto varIntScalar = io.InquireVariable("varIntScalar"); - auto blocksInfo = - engine.BlocksInfo(varIntScalar, engine.CurrentStep()); + auto blocksInfo = engine.BlocksInfo(varIntScalar, engine.CurrentStep()); for (const auto &bi : blocksInfo) { @@ -143,27 +133,21 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 12); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varString = - io.InquireVariable("varString"); + adios2::Variable varString = io.InquireVariable("varString"); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -183,44 +167,30 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, engine.Get(varInts, myInts.data(), adios2::Mode::Sync); engine.Get(varUInts, myUInts.data(), adios2::Mode::Sync); - VerifyData(myChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, start, count, shape, mpiRank); engine.Get(varFloats, myFloats.data(), adios2::Mode::Deferred); engine.Get(varDoubles, myDoubles.data(), adios2::Mode::Deferred); - engine.Get(varComplexes, myComplexes.data(), - adios2::Mode::Deferred); - engine.Get(varDComplexes, myDComplexes.data(), - adios2::Mode::Deferred); + engine.Get(varComplexes, myComplexes.data(), adios2::Mode::Deferred); + engine.Get(varDComplexes, myDComplexes.data(), adios2::Mode::Deferred); engine.PerformGets(); - VerifyData(myFloats.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDComplexes.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myFloats.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, start, count, shape, mpiRank); std::string s; engine.Get(varString, s); engine.PerformGets(); ASSERT_EQ(s, "sample string sample string sample string"); - ASSERT_EQ(varString.Min(), - "sample string sample string sample string"); - ASSERT_EQ(varString.Max(), - "sample string sample string sample string"); + ASSERT_EQ(varString.Min(), "sample string sample string sample string"); + ASSERT_EQ(varString.Max(), "sample string sample string sample string"); int i; engine.Get(varIntScalar, &i); @@ -230,8 +200,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } @@ -279,8 +248,7 @@ TEST_F(SscEngineTest, TestSscSingleStep) { std::string filename = "TestSscSingleStepNaive"; - adios2::Params engineParams = {{"Verbose", "0"}, - {"EngineMode", "naive"}}; + adios2::Params engineParams = {{"Verbose", "0"}, {"EngineMode", "naive"}}; int worldRank, worldSize; MPI_Comm_rank(MPI_COMM_WORLD, &worldRank); diff --git a/testing/adios2/engine/ssc/TestSscString.cpp b/testing/adios2/engine/ssc/TestSscString.cpp index 3d66007d63..a9c80463cd 100644 --- a/testing/adios2/engine/ssc/TestSscString.cpp +++ b/testing/adios2/engine/ssc/TestSscString.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varIntScalar = io.DefineVariable("varIntScalar"); auto varString = io.DefineVariable("varString"); io.DefineAttribute("AttInt", 110); @@ -93,9 +86,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -103,9 +95,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, io.SetParameters(engineParams); adios2::Engine engine = io.Open(name, adios2::Mode::Read); - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); while (true) @@ -114,8 +105,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, if (status == adios2::StepStatus::OK) { auto varIntScalar = io.InquireVariable("varIntScalar"); - auto blocksInfo = - engine.BlocksInfo(varIntScalar, engine.CurrentStep()); + auto blocksInfo = engine.BlocksInfo(varIntScalar, engine.CurrentStep()); for (const auto &bi : blocksInfo) { @@ -128,18 +118,14 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 12); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); - adios2::Variable varString = - io.InquireVariable("varString"); + adios2::Variable varChars = io.InquireVariable("varChars"); + adios2::Variable varString = io.InquireVariable("varString"); std::string s; engine.Get(varString, s, adios2::Mode::Sync); ASSERT_EQ(s, "sample string sample string sample string"); - ASSERT_EQ(varString.Min(), - "sample string sample string sample string"); - ASSERT_EQ(varString.Max(), - "sample string sample string sample string"); + ASSERT_EQ(varString.Min(), "sample string sample string sample string"); + ASSERT_EQ(varString.Max(), "sample string sample string sample string"); varChars.SetSelection({start, count}); engine.Get(varChars, myChars.data(), adios2::Mode::Sync); @@ -149,14 +135,12 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, engine.PerformGets(); ASSERT_EQ(i, currentStep); - VerifyData(myChars.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myChars.data(), currentStep, start, count, shape, mpiRank); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } diff --git a/testing/adios2/engine/ssc/TestSscStruct.cpp b/testing/adios2/engine/ssc/TestSscStruct.cpp index 3e93f6ea6e..c8b1810718 100644 --- a/testing/adios2/engine/ssc/TestSscStruct.cpp +++ b/testing/adios2/engine/ssc/TestSscStruct.cpp @@ -23,13 +23,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); io.SetEngine("ssc"); @@ -45,21 +43,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varIntScalar = io.DefineVariable("varIntScalar"); auto varString = io.DefineVariable("varString"); @@ -71,12 +64,10 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, auto particleDef = io.DefineStruct("particle", sizeof(particle)); particleDef.AddField("a", offsetof(struct particle, a), adios2::DataType::Int8); // simple field - particleDef.AddField("b", offsetof(struct particle, b), - adios2::DataType::Int32, sizeof(int)); // static array - auto varStruct = - io.DefineStructVariable("particles", particleDef, shape, start, count); - EXPECT_THROW(particleDef.AddField("c", 12, adios2::DataType::Int32), - std::runtime_error); + particleDef.AddField("b", offsetof(struct particle, b), adios2::DataType::Int32, + sizeof(int)); // static array + auto varStruct = io.DefineStructVariable("particles", particleDef, shape, start, count); + EXPECT_THROW(particleDef.AddField("c", 12, adios2::DataType::Int32), std::runtime_error); std::vector myParticles(datasize); for (size_t i = 0; i < datasize; ++i) { @@ -122,9 +113,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -132,9 +122,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, io.SetParameters(engineParams); adios2::Engine engine = io.Open(name, adios2::Mode::Read); - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -155,18 +144,13 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, engine.LockReaderSelections(); auto particleDef1 = io.DefineStruct("particle1", sizeof(particle)); - particleDef1.AddField("a", offsetof(struct particle, a), - adios2::DataType::Int8); - particleDef1.AddField("b", offsetof(struct particle, b), - adios2::DataType::Int32, 4); + particleDef1.AddField("a", offsetof(struct particle, a), adios2::DataType::Int8); + particleDef1.AddField("b", offsetof(struct particle, b), adios2::DataType::Int32, 4); auto particleDef2 = io.DefineStruct("particle2", sizeof(particle) + 4); - particleDef2.AddField("a", offsetof(struct particle, a), - adios2::DataType::Int8, 1); - particleDef2.AddField("b", offsetof(struct particle, b), - adios2::DataType::Int32, 4); - particleDef2.AddField("c", sizeof(particle) /* OK offset */, - adios2::DataType::Int32); + particleDef2.AddField("a", offsetof(struct particle, a), adios2::DataType::Int8, 1); + particleDef2.AddField("b", offsetof(struct particle, b), adios2::DataType::Int32, 4); + particleDef2.AddField("c", sizeof(particle) /* OK offset */, adios2::DataType::Int32); while (true) { @@ -174,8 +158,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, if (status == adios2::StepStatus::OK) { auto varIntScalar = io.InquireVariable("varIntScalar"); - auto blocksInfo = - engine.BlocksInfo(varIntScalar, engine.CurrentStep()); + auto blocksInfo = engine.BlocksInfo(varIntScalar, engine.CurrentStep()); for (const auto &bi : blocksInfo) { @@ -188,27 +171,21 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 12); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varString = - io.InquireVariable("varString"); + adios2::Variable varString = io.InquireVariable("varString"); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -228,43 +205,29 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, engine.Get(varInts, myInts.data(), adios2::Mode::Sync); engine.Get(varUInts, myUInts.data(), adios2::Mode::Sync); - VerifyData(myChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, start, count, shape, mpiRank); engine.Get(varFloats, myFloats.data(), adios2::Mode::Deferred); engine.Get(varDoubles, myDoubles.data(), adios2::Mode::Deferred); - engine.Get(varComplexes, myComplexes.data(), - adios2::Mode::Deferred); - engine.Get(varDComplexes, myDComplexes.data(), - adios2::Mode::Deferred); + engine.Get(varComplexes, myComplexes.data(), adios2::Mode::Deferred); + engine.Get(varDComplexes, myDComplexes.data(), adios2::Mode::Deferred); engine.PerformGets(); - VerifyData(myFloats.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDComplexes.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myFloats.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, start, count, shape, mpiRank); std::string s; engine.Get(varString, s); engine.PerformGets(); ASSERT_EQ(s, "sample string sample string sample string"); - ASSERT_EQ(varString.Min(), - "sample string sample string sample string"); - ASSERT_EQ(varString.Max(), - "sample string sample string sample string"); + ASSERT_EQ(varString.Min(), "sample string sample string sample string"); + ASSERT_EQ(varString.Max(), "sample string sample string sample string"); int i; engine.Get(varIntScalar, &i); @@ -294,8 +257,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, } { - auto varStruct = - io.InquireStructVariable("particles", particleDef1); + auto varStruct = io.InquireStructVariable("particles", particleDef1); varStruct.SetSelection({start, count}); ASSERT_TRUE(varStruct); engine.Get(varStruct, myParticles.data(), adios2::Mode::Sync); @@ -317,8 +279,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, } } { - auto varStruct = - io.InquireStructVariable("particles", particleDef2); + auto varStruct = io.InquireStructVariable("particles", particleDef2); ASSERT_FALSE(varStruct); } @@ -327,8 +288,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } @@ -364,8 +324,7 @@ TEST_F(SscEngineTest, TestSscStruct) } { std::string filename = "TestSscStructNaive"; - adios2::Params engineParams = {{"Verbose", "0"}, - {"EngineMode", "naive"}}; + adios2::Params engineParams = {{"Verbose", "0"}, {"EngineMode", "naive"}}; int mpiGroup = worldRank / (worldSize / 2); MPI_Comm_split(MPI_COMM_WORLD, mpiGroup, worldRank, &mpiComm); MPI_Comm_rank(mpiComm, &mpiRank); diff --git a/testing/adios2/engine/ssc/TestSscSuperLarge.cpp b/testing/adios2/engine/ssc/TestSscSuperLarge.cpp index ab6f5de060..2964c0a9ce 100644 --- a/testing/adios2/engine/ssc/TestSscSuperLarge.cpp +++ b/testing/adios2/engine/ssc/TestSscSuperLarge.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varIntScalar = io.DefineVariable("varIntScalar"); auto varString = io.DefineVariable("varString"); io.DefineAttribute("AttInt", 110); @@ -94,9 +87,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -104,9 +96,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, io.SetParameters(engineParams); adios2::Engine engine = io.Open(name, adios2::Mode::Read); - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -126,8 +117,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, if (status == adios2::StepStatus::OK) { auto varIntScalar = io.InquireVariable("varIntScalar"); - auto blocksInfo = - engine.BlocksInfo(varIntScalar, engine.CurrentStep()); + auto blocksInfo = engine.BlocksInfo(varIntScalar, engine.CurrentStep()); for (const auto &bi : blocksInfo) { @@ -140,27 +130,21 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 12); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varString = - io.InquireVariable("varString"); + adios2::Variable varString = io.InquireVariable("varString"); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -180,44 +164,30 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, engine.Get(varInts, myInts.data(), adios2::Mode::Sync); engine.Get(varUInts, myUInts.data(), adios2::Mode::Sync); - VerifyData(myChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, start, count, shape, mpiRank); engine.Get(varFloats, myFloats.data(), adios2::Mode::Deferred); engine.Get(varDoubles, myDoubles.data(), adios2::Mode::Deferred); - engine.Get(varComplexes, myComplexes.data(), - adios2::Mode::Deferred); - engine.Get(varDComplexes, myDComplexes.data(), - adios2::Mode::Deferred); + engine.Get(varComplexes, myComplexes.data(), adios2::Mode::Deferred); + engine.Get(varDComplexes, myDComplexes.data(), adios2::Mode::Deferred); engine.PerformGets(); - VerifyData(myFloats.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDComplexes.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myFloats.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, start, count, shape, mpiRank); std::string s; engine.Get(varString, s); engine.PerformGets(); ASSERT_EQ(s, "sample string sample string sample string"); - ASSERT_EQ(varString.Min(), - "sample string sample string sample string"); - ASSERT_EQ(varString.Max(), - "sample string sample string sample string"); + ASSERT_EQ(varString.Min(), "sample string sample string sample string"); + ASSERT_EQ(varString.Max(), "sample string sample string sample string"); int i; engine.Get(varIntScalar, &i); @@ -227,8 +197,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } @@ -275,8 +244,7 @@ TEST_F(SscEngineTest, TestSscSuperLarge) { std::string filename = "TestSscSuperLargeNaive"; - adios2::Params engineParams = {{"Verbose", "0"}, - {"EngineMode", "naive"}}; + adios2::Params engineParams = {{"Verbose", "0"}, {"EngineMode", "naive"}}; int worldRank, worldSize; MPI_Comm_rank(MPI_COMM_WORLD, &worldRank); diff --git a/testing/adios2/engine/ssc/TestSscUnbalanced.cpp b/testing/adios2/engine/ssc/TestSscUnbalanced.cpp index cab08904e7..b9d741b62b 100644 --- a/testing/adios2/engine/ssc/TestSscUnbalanced.cpp +++ b/testing/adios2/engine/ssc/TestSscUnbalanced.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varIntScalar = io.DefineVariable("varIntScalar"); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open(name, adios2::Mode::Write); @@ -91,9 +84,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -102,9 +94,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, adios2::Engine engine = io.Open(name, adios2::Mode::Read); engine.LockReaderSelections(); - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -124,21 +115,16 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 11); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = @@ -171,32 +157,21 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, ASSERT_EQ(i, currentStep); - VerifyData(myChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myFloats.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDComplexes.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myFloats.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, start, count, shape, mpiRank); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } @@ -245,8 +220,7 @@ TEST_F(SscEngineTest, TestSscUnbalanced) { std::string filename = "TestSscUnbalancedNaive"; - adios2::Params engineParams = {{"Verbose", "0"}, - {"EngineMode", "naive"}}; + adios2::Params engineParams = {{"Verbose", "0"}, {"EngineMode", "naive"}}; int worldRank, worldSize; MPI_Comm_rank(MPI_COMM_WORLD, &worldRank); diff --git a/testing/adios2/engine/ssc/TestSscVaryingSteps.cpp b/testing/adios2/engine/ssc/TestSscVaryingSteps.cpp index cdf076f44a..439ed6266e 100644 --- a/testing/adios2/engine/ssc/TestSscVaryingSteps.cpp +++ b/testing/adios2/engine/ssc/TestSscVaryingSteps.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varIntScalar = io.DefineVariable("varIntScalar"); auto varString = io.DefineVariable("varString"); io.DefineAttribute("AttInt", 110); @@ -123,9 +116,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -134,9 +126,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, adios2::Engine engine = io.Open(name, adios2::Mode::Read); // engine.LockReaderSelections(); - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -154,8 +145,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, if (status == adios2::StepStatus::OK) { auto varIntScalar = io.InquireVariable("varIntScalar"); - auto blocksInfo = - engine.BlocksInfo(varIntScalar, engine.CurrentStep()); + auto blocksInfo = engine.BlocksInfo(varIntScalar, engine.CurrentStep()); for (const auto &bi : blocksInfo) { @@ -168,59 +158,43 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 12); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varString = - io.InquireVariable("varString"); + adios2::Variable varString = io.InquireVariable("varString"); auto vshape = varChars.Shape(); - myChars.resize(std::accumulate(vshape.begin(), vshape.end(), - static_cast(1), + myChars.resize(std::accumulate(vshape.begin(), vshape.end(), static_cast(1), std::multiplies())); - myUChars.resize(std::accumulate(vshape.begin(), vshape.end(), - static_cast(1), + myUChars.resize(std::accumulate(vshape.begin(), vshape.end(), static_cast(1), std::multiplies())); - myShorts.resize(std::accumulate(vshape.begin(), vshape.end(), - static_cast(1), + myShorts.resize(std::accumulate(vshape.begin(), vshape.end(), static_cast(1), std::multiplies())); - myUShorts.resize(std::accumulate(vshape.begin(), vshape.end(), - static_cast(1), + myUShorts.resize(std::accumulate(vshape.begin(), vshape.end(), static_cast(1), std::multiplies())); - myInts.resize(std::accumulate(vshape.begin(), vshape.end(), - static_cast(1), + myInts.resize(std::accumulate(vshape.begin(), vshape.end(), static_cast(1), std::multiplies())); - myUInts.resize(std::accumulate(vshape.begin(), vshape.end(), - static_cast(1), + myUInts.resize(std::accumulate(vshape.begin(), vshape.end(), static_cast(1), std::multiplies())); - myFloats.resize(std::accumulate(vshape.begin(), vshape.end(), - static_cast(1), + myFloats.resize(std::accumulate(vshape.begin(), vshape.end(), static_cast(1), std::multiplies())); - myDoubles.resize(std::accumulate(vshape.begin(), vshape.end(), - static_cast(1), + myDoubles.resize(std::accumulate(vshape.begin(), vshape.end(), static_cast(1), std::multiplies())); - myComplexes.resize(std::accumulate(vshape.begin(), vshape.end(), - static_cast(1), + myComplexes.resize(std::accumulate(vshape.begin(), vshape.end(), static_cast(1), std::multiplies())); myDComplexes.resize(std::accumulate(vshape.begin(), vshape.end(), - static_cast(1), - std::multiplies())); + static_cast(1), std::multiplies())); engine.Get(varChars, myChars.data(), adios2::Mode::Sync); engine.Get(varUChars, myUChars.data(), adios2::Mode::Sync); @@ -235,41 +209,28 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, std::string s; engine.Get(varString, s, adios2::Mode::Sync); ASSERT_EQ(s, "sample string sample string sample string"); - ASSERT_EQ(varString.Min(), - "sample string sample string sample string"); - ASSERT_EQ(varString.Max(), - "sample string sample string sample string"); + ASSERT_EQ(varString.Min(), "sample string sample string sample string"); + ASSERT_EQ(varString.Max(), "sample string sample string sample string"); int i; engine.Get(varIntScalar, &i, adios2::Mode::Sync); ASSERT_EQ(i, currentStep); - VerifyData(myChars.data(), currentStep, {0, 0}, vshape, vshape, - mpiRank); - VerifyData(myUChars.data(), currentStep, {0, 0}, vshape, vshape, - mpiRank); - VerifyData(myShorts.data(), currentStep, {0, 0}, vshape, vshape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, {0, 0}, vshape, vshape, - mpiRank); - VerifyData(myInts.data(), currentStep, {0, 0}, vshape, vshape, - mpiRank); - VerifyData(myUInts.data(), currentStep, {0, 0}, vshape, vshape, - mpiRank); - VerifyData(myFloats.data(), currentStep, {0, 0}, vshape, vshape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, {0, 0}, vshape, vshape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, {0, 0}, vshape, vshape, - mpiRank); - VerifyData(myDComplexes.data(), currentStep, {0, 0}, vshape, vshape, - mpiRank); + VerifyData(myChars.data(), currentStep, {0, 0}, vshape, vshape, mpiRank); + VerifyData(myUChars.data(), currentStep, {0, 0}, vshape, vshape, mpiRank); + VerifyData(myShorts.data(), currentStep, {0, 0}, vshape, vshape, mpiRank); + VerifyData(myUShorts.data(), currentStep, {0, 0}, vshape, vshape, mpiRank); + VerifyData(myInts.data(), currentStep, {0, 0}, vshape, vshape, mpiRank); + VerifyData(myUInts.data(), currentStep, {0, 0}, vshape, vshape, mpiRank); + VerifyData(myFloats.data(), currentStep, {0, 0}, vshape, vshape, mpiRank); + VerifyData(myDoubles.data(), currentStep, {0, 0}, vshape, vshape, mpiRank); + VerifyData(myComplexes.data(), currentStep, {0, 0}, vshape, vshape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, {0, 0}, vshape, vshape, mpiRank); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } @@ -316,8 +277,7 @@ TEST_F(SscEngineTest, TestSscVaryingSteps) { std::string filename = "TestSscVaryingStepsNaive"; - adios2::Params engineParams = {{"Verbose", "0"}, - {"EngineMode", "naive"}}; + adios2::Params engineParams = {{"Verbose", "0"}, {"EngineMode", "naive"}}; int worldRank, worldSize; MPI_Comm_rank(MPI_COMM_WORLD, &worldRank); diff --git a/testing/adios2/engine/ssc/TestSscWriterMultiblock.cpp b/testing/adios2/engine/ssc/TestSscWriterMultiblock.cpp index 3731f51701..31f35327d6 100644 --- a/testing/adios2/engine/ssc/TestSscWriterMultiblock.cpp +++ b/testing/adios2/engine/ssc/TestSscWriterMultiblock.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("WAN"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varIntScalar = io.DefineVariable("varIntScalar"); io.DefineAttribute("AttInt", 110); adios2::Engine engine = io.Open(name, adios2::Mode::Write); @@ -143,9 +136,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -154,9 +146,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, adios2::Engine engine = io.Open(name, adios2::Mode::Read); engine.LockReaderSelections(); - size_t datasize = - std::accumulate(shape.begin(), shape.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(shape.begin(), shape.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -176,21 +167,16 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 11); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = @@ -211,32 +197,21 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, engine.Get(varIntScalar, &i, adios2::Mode::Sync); ASSERT_EQ(i, currentStep); - VerifyData(myChars.data(), currentStep, start, shape, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, start, shape, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, start, shape, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, start, shape, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, start, shape, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, start, shape, shape, - mpiRank); - VerifyData(myFloats.data(), currentStep, start, shape, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, start, shape, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, start, shape, shape, - mpiRank); - VerifyData(myDComplexes.data(), currentStep, start, shape, shape, - mpiRank); + VerifyData(myChars.data(), currentStep, start, shape, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, start, shape, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, start, shape, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, start, shape, shape, mpiRank); + VerifyData(myInts.data(), currentStep, start, shape, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, start, shape, shape, mpiRank); + VerifyData(myFloats.data(), currentStep, start, shape, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, start, shape, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, start, shape, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, start, shape, shape, mpiRank); engine.EndStep(); } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } @@ -286,8 +261,7 @@ TEST_F(SscEngineTest, TestSscWriterMultiblock) { std::string filename = "TestSscWriterMultiblockNaive"; - adios2::Params engineParams = {{"Verbose", "0"}, - {"EngineMode", "naive"}}; + adios2::Params engineParams = {{"Verbose", "0"}, {"EngineMode", "naive"}}; int worldRank, worldSize; MPI_Comm_rank(MPI_COMM_WORLD, &worldRank); diff --git a/testing/adios2/engine/ssc/TestSscXgc2Way.cpp b/testing/adios2/engine/ssc/TestSscXgc2Way.cpp index 23005a39be..69dd1b5ebf 100644 --- a/testing/adios2/engine/ssc/TestSscXgc2Way.cpp +++ b/testing/adios2/engine/ssc/TestSscXgc2Way.cpp @@ -22,12 +22,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void xgc(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void xgc(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector x_to_g_data(datasize); std::vector g_to_x_data; @@ -42,11 +41,9 @@ void xgc(const Dims &shape, const Dims &start, const Dims &count, g_to_x_io.SetEngine("ssc"); g_to_x_io.SetParameters(engineParams); - auto x_to_g_var = - x_to_g_io.DefineVariable("x_to_g", shape, start, count); + auto x_to_g_var = x_to_g_io.DefineVariable("x_to_g", shape, start, count); - adios2::Engine x_to_g_engine = - x_to_g_io.Open("x_to_g", adios2::Mode::Write); + adios2::Engine x_to_g_engine = x_to_g_io.Open("x_to_g", adios2::Mode::Write); adios2::Engine g_to_x_engine = g_to_x_io.Open("g_to_x", adios2::Mode::Read); x_to_g_engine.LockWriterDefinitions(); g_to_x_engine.LockReaderSelections(); @@ -62,11 +59,9 @@ void xgc(const Dims &shape, const Dims &start, const Dims &count, auto g_to_x_var = g_to_x_io.InquireVariable("g_to_x"); auto readShape = g_to_x_var.Shape(); g_to_x_data.resize(std::accumulate(readShape.begin(), readShape.end(), - static_cast(1), - std::multiplies())); + static_cast(1), std::multiplies())); g_to_x_engine.Get(g_to_x_var, g_to_x_data.data(), adios2::Mode::Sync); - VerifyData(g_to_x_data.data(), i, Dims(readShape.size(), 0), readShape, - readShape, mpiRank); + VerifyData(g_to_x_data.data(), i, Dims(readShape.size(), 0), readShape, readShape, mpiRank); g_to_x_engine.EndStep(); } @@ -75,8 +70,8 @@ void xgc(const Dims &shape, const Dims &start, const Dims &count, g_to_x_engine.Close(); } -void gene(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void gene(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { adios2::ADIOS adios(mpiComm); @@ -88,18 +83,15 @@ void gene(const Dims &shape, const Dims &start, const Dims &count, g_to_x_io.SetEngine("ssc"); g_to_x_io.SetParameters(engineParams); - auto g_to_x_var = - g_to_x_io.DefineVariable("g_to_x", shape, start, count); + auto g_to_x_var = g_to_x_io.DefineVariable("g_to_x", shape, start, count); adios2::Engine x_to_g_engine = x_to_g_io.Open("x_to_g", adios2::Mode::Read); - adios2::Engine g_to_x_engine = - g_to_x_io.Open("g_to_x", adios2::Mode::Write); + adios2::Engine g_to_x_engine = g_to_x_io.Open("g_to_x", adios2::Mode::Write); g_to_x_engine.LockWriterDefinitions(); x_to_g_engine.LockReaderSelections(); - size_t datasize = - std::accumulate(shape.begin(), shape.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(shape.begin(), shape.end(), static_cast(1), + std::multiplies()); std::vector x_to_g_data; std::vector g_to_x_data(datasize); @@ -109,11 +101,9 @@ void gene(const Dims &shape, const Dims &start, const Dims &count, auto x_to_g_var = x_to_g_io.InquireVariable("x_to_g"); auto readShape = x_to_g_var.Shape(); x_to_g_data.resize(std::accumulate(readShape.begin(), readShape.end(), - static_cast(1), - std::multiplies())); + static_cast(1), std::multiplies())); x_to_g_engine.Get(x_to_g_var, x_to_g_data.data(), adios2::Mode::Sync); - VerifyData(x_to_g_data.data(), i, Dims(readShape.size(), 0), readShape, - readShape, mpiRank); + VerifyData(x_to_g_data.data(), i, Dims(readShape.size(), 0), readShape, readShape, mpiRank); x_to_g_engine.EndStep(); g_to_x_engine.BeginStep(); diff --git a/testing/adios2/engine/ssc/TestSscXgc3Way.cpp b/testing/adios2/engine/ssc/TestSscXgc3Way.cpp index daa2c4510b..3e918f8c82 100644 --- a/testing/adios2/engine/ssc/TestSscXgc3Way.cpp +++ b/testing/adios2/engine/ssc/TestSscXgc3Way.cpp @@ -22,12 +22,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void coupler(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void coupler(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); @@ -52,20 +51,16 @@ void coupler(const Dims &shape, const Dims &start, const Dims &count, std::vector g_to_c_data; std::vector c_to_g_data(datasize); - auto c_to_x_var = - c_to_x_io.DefineVariable("c_to_x", shape, start, count); - auto c_to_g_var = - c_to_g_io.DefineVariable("c_to_g", shape, start, count); + auto c_to_x_var = c_to_x_io.DefineVariable("c_to_x", shape, start, count); + auto c_to_g_var = c_to_g_io.DefineVariable("c_to_g", shape, start, count); adios2::Engine x_to_c_engine = x_to_c_io.Open("x_to_c", adios2::Mode::Read); x_to_c_engine.LockReaderSelections(); - adios2::Engine c_to_x_engine = - c_to_x_io.Open("c_to_x", adios2::Mode::Write); + adios2::Engine c_to_x_engine = c_to_x_io.Open("c_to_x", adios2::Mode::Write); c_to_x_engine.LockWriterDefinitions(); - adios2::Engine c_to_g_engine = - c_to_g_io.Open("c_to_g", adios2::Mode::Write); + adios2::Engine c_to_g_engine = c_to_g_io.Open("c_to_g", adios2::Mode::Write); c_to_g_engine.LockWriterDefinitions(); adios2::Engine g_to_c_engine = g_to_c_io.Open("g_to_c", adios2::Mode::Read); @@ -77,11 +72,9 @@ void coupler(const Dims &shape, const Dims &start, const Dims &count, auto x_to_c_var = x_to_c_io.InquireVariable("x_to_c"); auto readShape = x_to_c_var.Shape(); x_to_c_data.resize(std::accumulate(readShape.begin(), readShape.end(), - static_cast(1), - std::multiplies())); + static_cast(1), std::multiplies())); x_to_c_engine.Get(x_to_c_var, x_to_c_data.data(), adios2::Mode::Sync); - VerifyData(x_to_c_data.data(), i, Dims(readShape.size(), 0), readShape, - readShape, mpiRank); + VerifyData(x_to_c_data.data(), i, Dims(readShape.size(), 0), readShape, readShape, mpiRank); x_to_c_engine.EndStep(); c_to_g_engine.BeginStep(); @@ -93,11 +86,9 @@ void coupler(const Dims &shape, const Dims &start, const Dims &count, auto g_to_c_var = g_to_c_io.InquireVariable("g_to_c"); readShape = g_to_c_var.Shape(); g_to_c_data.resize(std::accumulate(readShape.begin(), readShape.end(), - static_cast(1), - std::multiplies())); + static_cast(1), std::multiplies())); g_to_c_engine.Get(g_to_c_var, g_to_c_data.data(), adios2::Mode::Sync); - VerifyData(g_to_c_data.data(), i, Dims(readShape.size(), 0), readShape, - readShape, mpiRank); + VerifyData(g_to_c_data.data(), i, Dims(readShape.size(), 0), readShape, readShape, mpiRank); g_to_c_engine.EndStep(); c_to_x_engine.BeginStep(); @@ -114,12 +105,11 @@ void coupler(const Dims &shape, const Dims &start, const Dims &count, c_to_x_engine.Close(); } -void xgc(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void xgc(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector x_to_c_data(datasize); std::vector c_to_x_data; @@ -134,11 +124,9 @@ void xgc(const Dims &shape, const Dims &start, const Dims &count, c_to_x_io.SetEngine("ssc"); c_to_x_io.SetParameters(engineParams); - auto x_to_c_var = - x_to_c_io.DefineVariable("x_to_c", shape, start, count); + auto x_to_c_var = x_to_c_io.DefineVariable("x_to_c", shape, start, count); - adios2::Engine x_to_c_engine = - x_to_c_io.Open("x_to_c", adios2::Mode::Write); + adios2::Engine x_to_c_engine = x_to_c_io.Open("x_to_c", adios2::Mode::Write); x_to_c_engine.LockWriterDefinitions(); adios2::Engine c_to_x_engine = c_to_x_io.Open("c_to_x", adios2::Mode::Read); @@ -155,11 +143,9 @@ void xgc(const Dims &shape, const Dims &start, const Dims &count, auto c_to_x_var = c_to_x_io.InquireVariable("c_to_x"); auto readShape = c_to_x_var.Shape(); c_to_x_data.resize(std::accumulate(readShape.begin(), readShape.end(), - static_cast(1), - std::multiplies())); + static_cast(1), std::multiplies())); c_to_x_engine.Get(c_to_x_var, c_to_x_data.data(), adios2::Mode::Sync); - VerifyData(c_to_x_data.data(), i, Dims(readShape.size(), 0), readShape, - readShape, mpiRank); + VerifyData(c_to_x_data.data(), i, Dims(readShape.size(), 0), readShape, readShape, mpiRank); c_to_x_engine.EndStep(); } @@ -168,8 +154,8 @@ void xgc(const Dims &shape, const Dims &start, const Dims &count, c_to_x_engine.Close(); } -void gene(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void gene(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { adios2::ADIOS adios(mpiComm); @@ -181,18 +167,15 @@ void gene(const Dims &shape, const Dims &start, const Dims &count, g_to_c_io.SetEngine("ssc"); g_to_c_io.SetParameters(engineParams); - auto g_to_c_var = - g_to_c_io.DefineVariable("g_to_c", shape, start, count); + auto g_to_c_var = g_to_c_io.DefineVariable("g_to_c", shape, start, count); adios2::Engine c_to_g_engine = c_to_g_io.Open("c_to_g", adios2::Mode::Read); c_to_g_engine.LockReaderSelections(); - adios2::Engine g_to_c_engine = - g_to_c_io.Open("g_to_c", adios2::Mode::Write); + adios2::Engine g_to_c_engine = g_to_c_io.Open("g_to_c", adios2::Mode::Write); g_to_c_engine.LockWriterDefinitions(); - size_t datasize = - std::accumulate(shape.begin(), shape.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(shape.begin(), shape.end(), static_cast(1), + std::multiplies()); std::vector c_to_g_data; std::vector g_to_c_data(datasize); @@ -202,11 +185,9 @@ void gene(const Dims &shape, const Dims &start, const Dims &count, auto c_to_g_var = c_to_g_io.InquireVariable("c_to_g"); auto readShape = c_to_g_var.Shape(); c_to_g_data.resize(std::accumulate(readShape.begin(), readShape.end(), - static_cast(1), - std::multiplies())); + static_cast(1), std::multiplies())); c_to_g_engine.Get(c_to_g_var, c_to_g_data.data(), adios2::Mode::Sync); - VerifyData(c_to_g_data.data(), i, Dims(readShape.size(), 0), readShape, - readShape, mpiRank); + VerifyData(c_to_g_data.data(), i, Dims(readShape.size(), 0), readShape, readShape, mpiRank); c_to_g_engine.EndStep(); g_to_c_engine.BeginStep(); diff --git a/testing/adios2/engine/ssc/TestSscXgc3WayMatchedSteps.cpp b/testing/adios2/engine/ssc/TestSscXgc3WayMatchedSteps.cpp index ff050051a2..d6e94b75f9 100644 --- a/testing/adios2/engine/ssc/TestSscXgc3WayMatchedSteps.cpp +++ b/testing/adios2/engine/ssc/TestSscXgc3WayMatchedSteps.cpp @@ -22,12 +22,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void coupler(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void coupler(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); @@ -52,20 +51,16 @@ void coupler(const Dims &shape, const Dims &start, const Dims &count, std::vector g_to_c_data; std::vector c_to_g_data(datasize); - auto c_to_x_var = - c_to_x_io.DefineVariable("c_to_x", shape, start, count); - auto c_to_g_var = - c_to_g_io.DefineVariable("c_to_g", shape, start, count); + auto c_to_x_var = c_to_x_io.DefineVariable("c_to_x", shape, start, count); + auto c_to_g_var = c_to_g_io.DefineVariable("c_to_g", shape, start, count); adios2::Engine x_to_c_engine = x_to_c_io.Open("x_to_c", adios2::Mode::Read); x_to_c_engine.LockReaderSelections(); - adios2::Engine c_to_x_engine = - c_to_x_io.Open("c_to_x", adios2::Mode::Write); + adios2::Engine c_to_x_engine = c_to_x_io.Open("c_to_x", adios2::Mode::Write); c_to_x_engine.LockWriterDefinitions(); - adios2::Engine c_to_g_engine = - c_to_g_io.Open("c_to_g", adios2::Mode::Write); + adios2::Engine c_to_g_engine = c_to_g_io.Open("c_to_g", adios2::Mode::Write); c_to_g_engine.LockWriterDefinitions(); adios2::Engine g_to_c_engine = g_to_c_io.Open("g_to_c", adios2::Mode::Read); @@ -77,11 +72,9 @@ void coupler(const Dims &shape, const Dims &start, const Dims &count, auto x_to_c_var = x_to_c_io.InquireVariable("x_to_c"); auto readShape = x_to_c_var.Shape(); x_to_c_data.resize(std::accumulate(readShape.begin(), readShape.end(), - static_cast(1), - std::multiplies())); + static_cast(1), std::multiplies())); x_to_c_engine.Get(x_to_c_var, x_to_c_data.data(), adios2::Mode::Sync); - VerifyData(x_to_c_data.data(), i, Dims(readShape.size(), 0), readShape, - readShape, mpiRank); + VerifyData(x_to_c_data.data(), i, Dims(readShape.size(), 0), readShape, readShape, mpiRank); x_to_c_engine.EndStep(); c_to_g_engine.BeginStep(); @@ -93,11 +86,9 @@ void coupler(const Dims &shape, const Dims &start, const Dims &count, auto g_to_c_var = g_to_c_io.InquireVariable("g_to_c"); readShape = g_to_c_var.Shape(); g_to_c_data.resize(std::accumulate(readShape.begin(), readShape.end(), - static_cast(1), - std::multiplies())); + static_cast(1), std::multiplies())); g_to_c_engine.Get(g_to_c_var, g_to_c_data.data(), adios2::Mode::Sync); - VerifyData(g_to_c_data.data(), i, Dims(readShape.size(), 0), readShape, - readShape, mpiRank); + VerifyData(g_to_c_data.data(), i, Dims(readShape.size(), 0), readShape, readShape, mpiRank); g_to_c_engine.EndStep(); c_to_x_engine.BeginStep(); @@ -112,12 +103,11 @@ void coupler(const Dims &shape, const Dims &start, const Dims &count, c_to_x_engine.Close(); } -void xgc(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void xgc(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector x_to_c_data(datasize); std::vector c_to_x_data; @@ -132,11 +122,9 @@ void xgc(const Dims &shape, const Dims &start, const Dims &count, c_to_x_io.SetEngine("ssc"); c_to_x_io.SetParameters(engineParams); - auto x_to_c_var = - x_to_c_io.DefineVariable("x_to_c", shape, start, count); + auto x_to_c_var = x_to_c_io.DefineVariable("x_to_c", shape, start, count); - adios2::Engine x_to_c_engine = - x_to_c_io.Open("x_to_c", adios2::Mode::Write); + adios2::Engine x_to_c_engine = x_to_c_io.Open("x_to_c", adios2::Mode::Write); x_to_c_engine.LockWriterDefinitions(); adios2::Engine c_to_x_engine = c_to_x_io.Open("c_to_x", adios2::Mode::Read); @@ -153,11 +141,9 @@ void xgc(const Dims &shape, const Dims &start, const Dims &count, auto c_to_x_var = c_to_x_io.InquireVariable("c_to_x"); auto readShape = c_to_x_var.Shape(); c_to_x_data.resize(std::accumulate(readShape.begin(), readShape.end(), - static_cast(1), - std::multiplies())); + static_cast(1), std::multiplies())); c_to_x_engine.Get(c_to_x_var, c_to_x_data.data(), adios2::Mode::Sync); - VerifyData(c_to_x_data.data(), i, Dims(readShape.size(), 0), readShape, - readShape, mpiRank); + VerifyData(c_to_x_data.data(), i, Dims(readShape.size(), 0), readShape, readShape, mpiRank); c_to_x_engine.EndStep(); } @@ -165,8 +151,8 @@ void xgc(const Dims &shape, const Dims &start, const Dims &count, c_to_x_engine.Close(); } -void gene(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams) +void gene(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams) { adios2::ADIOS adios(mpiComm); @@ -178,18 +164,15 @@ void gene(const Dims &shape, const Dims &start, const Dims &count, g_to_c_io.SetEngine("ssc"); g_to_c_io.SetParameters(engineParams); - auto g_to_c_var = - g_to_c_io.DefineVariable("g_to_c", shape, start, count); + auto g_to_c_var = g_to_c_io.DefineVariable("g_to_c", shape, start, count); adios2::Engine c_to_g_engine = c_to_g_io.Open("c_to_g", adios2::Mode::Read); c_to_g_engine.LockReaderSelections(); - adios2::Engine g_to_c_engine = - g_to_c_io.Open("g_to_c", adios2::Mode::Write); + adios2::Engine g_to_c_engine = g_to_c_io.Open("g_to_c", adios2::Mode::Write); g_to_c_engine.LockWriterDefinitions(); - size_t datasize = - std::accumulate(shape.begin(), shape.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(shape.begin(), shape.end(), static_cast(1), + std::multiplies()); std::vector c_to_g_data; std::vector g_to_c_data(datasize); @@ -199,11 +182,9 @@ void gene(const Dims &shape, const Dims &start, const Dims &count, auto c_to_g_var = c_to_g_io.InquireVariable("c_to_g"); auto readShape = c_to_g_var.Shape(); c_to_g_data.resize(std::accumulate(readShape.begin(), readShape.end(), - static_cast(1), - std::multiplies())); + static_cast(1), std::multiplies())); c_to_g_engine.Get(c_to_g_var, c_to_g_data.data(), adios2::Mode::Sync); - VerifyData(c_to_g_data.data(), i, Dims(readShape.size(), 0), readShape, - readShape, mpiRank); + VerifyData(c_to_g_data.data(), i, Dims(readShape.size(), 0), readShape, readShape, mpiRank); c_to_g_engine.EndStep(); g_to_c_engine.BeginStep(); diff --git a/testing/adios2/engine/ssc/TestSscZeroBlock.cpp b/testing/adios2/engine/ssc/TestSscZeroBlock.cpp index 83abe70d6e..103c1f4008 100644 --- a/testing/adios2/engine/ssc/TestSscZeroBlock.cpp +++ b/testing/adios2/engine/ssc/TestSscZeroBlock.cpp @@ -21,13 +21,11 @@ class SscEngineTest : public ::testing::Test SscEngineTest() = default; }; -void Writer(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Writer(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { - size_t datasize = - std::accumulate(shape.begin(), shape.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(shape.begin(), shape.end(), static_cast(1), + std::multiplies()); adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); io.SetEngine("ssc"); @@ -43,21 +41,16 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, shape); - auto varUChars = - io.DefineVariable("varUChars", shape, start, shape); + auto varUChars = io.DefineVariable("varUChars", shape, start, shape); auto varShorts = io.DefineVariable("varShorts", shape, start, shape); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, shape); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, shape); auto varInts = io.DefineVariable("varInts", shape, start, shape); - auto varUInts = - io.DefineVariable("varUInts", shape, start, shape); + auto varUInts = io.DefineVariable("varUInts", shape, start, shape); auto varFloats = io.DefineVariable("varFloats", shape, start, shape); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, shape); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, shape); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, shape); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, shape); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, shape); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, shape); auto varIntScalar = io.DefineVariable("varIntScalar"); auto varString = io.DefineVariable("varString"); io.DefineAttribute("AttInt", 110); @@ -97,9 +90,8 @@ void Writer(const Dims &shape, const Dims &start, const Dims &count, engine.Close(); } -void Reader(const Dims &shape, const Dims &start, const Dims &count, - const size_t steps, const adios2::Params &engineParams, - const std::string &name) +void Reader(const Dims &shape, const Dims &start, const Dims &count, const size_t steps, + const adios2::Params &engineParams, const std::string &name) { adios2::ADIOS adios(mpiComm); adios2::IO io = adios.DeclareIO("Test"); @@ -107,9 +99,8 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, io.SetParameters(engineParams); adios2::Engine engine = io.Open(name, adios2::Mode::Read); - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -129,8 +120,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, if (status == adios2::StepStatus::OK) { auto varIntScalar = io.InquireVariable("varIntScalar"); - auto blocksInfo = - engine.BlocksInfo(varIntScalar, engine.CurrentStep()); + auto blocksInfo = engine.BlocksInfo(varIntScalar, engine.CurrentStep()); for (const auto &bi : blocksInfo) { @@ -143,27 +133,21 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 12); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varString = - io.InquireVariable("varString"); + adios2::Variable varString = io.InquireVariable("varString"); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -183,44 +167,30 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, engine.Get(varInts, myInts.data(), adios2::Mode::Sync); engine.Get(varUInts, myUInts.data(), adios2::Mode::Sync); - VerifyData(myChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, start, count, shape, mpiRank); engine.Get(varFloats, myFloats.data(), adios2::Mode::Deferred); engine.Get(varDoubles, myDoubles.data(), adios2::Mode::Deferred); - engine.Get(varComplexes, myComplexes.data(), - adios2::Mode::Deferred); - engine.Get(varDComplexes, myDComplexes.data(), - adios2::Mode::Deferred); + engine.Get(varComplexes, myComplexes.data(), adios2::Mode::Deferred); + engine.Get(varDComplexes, myDComplexes.data(), adios2::Mode::Deferred); engine.PerformGets(); - VerifyData(myFloats.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDComplexes.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myFloats.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, start, count, shape, mpiRank); std::string s; engine.Get(varString, s); engine.PerformGets(); ASSERT_EQ(s, "sample string sample string sample string"); - ASSERT_EQ(varString.Min(), - "sample string sample string sample string"); - ASSERT_EQ(varString.Max(), - "sample string sample string sample string"); + ASSERT_EQ(varString.Min(), "sample string sample string sample string"); + ASSERT_EQ(varString.Max(), "sample string sample string sample string"); int i; engine.Get(varIntScalar, &i); @@ -230,8 +200,7 @@ void Reader(const Dims &shape, const Dims &start, const Dims &count, } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } @@ -270,8 +239,7 @@ TEST_F(SscEngineTest, TestSscZeroBlock) } { std::string filename = "TestSscZeroBlock"; - adios2::Params engineParams = {{"Verbose", "0"}, - {"EngineMode", "naive"}}; + adios2::Params engineParams = {{"Verbose", "0"}, {"EngineMode", "naive"}}; int worldRank, worldSize; MPI_Comm_rank(MPI_COMM_WORLD, &worldRank); MPI_Comm_size(MPI_COMM_WORLD, &worldSize); diff --git a/testing/adios2/engine/sst/TestSstParamFails.cpp b/testing/adios2/engine/sst/TestSstParamFails.cpp index ef10916333..d8df80badd 100644 --- a/testing/adios2/engine/sst/TestSstParamFails.cpp +++ b/testing/adios2/engine/sst/TestSstParamFails.cpp @@ -47,8 +47,7 @@ static adios2::Params ParseEngineParams(std::string Input) std::getline(ss2, ParamName, ':'); if (!std::getline(ss2, ParamValue, ':')) { - throw std::invalid_argument("Engine parameter \"" + Param + - "\" missing value"); + throw std::invalid_argument("Engine parameter \"" + Param + "\" missing value"); } Ret[Trim(ParamName)] = Trim(ParamValue); } @@ -58,16 +57,14 @@ static adios2::Params ParseEngineParams(std::string Input) // ADIOS2 Sst param fail TEST_F(SstParamFailTest, ParamNoValue) { - EXPECT_THROW(adios2::Params engineParams = - ParseEngineParams("MarshalMethod:"), + EXPECT_THROW(adios2::Params engineParams = ParseEngineParams("MarshalMethod:"), std::invalid_argument); } // ADIOS2 Sst param fail TEST_F(SstParamFailTest, ParamNoValue2) { - EXPECT_THROW(adios2::Params engineParams = - ParseEngineParams("MarshalMethod"), + EXPECT_THROW(adios2::Params engineParams = ParseEngineParams("MarshalMethod"), std::invalid_argument); } @@ -89,8 +86,7 @@ TEST_F(SstParamFailTest, MarshalMethodUnknown) io.SetParameters(engineParams); adios2::Engine engine; - EXPECT_THROW(engine = io.Open(fname, adios2::Mode::Write), - std::invalid_argument); + EXPECT_THROW(engine = io.Open(fname, adios2::Mode::Write), std::invalid_argument); // Close the file EXPECT_FALSE(engine); } @@ -98,8 +94,7 @@ TEST_F(SstParamFailTest, MarshalMethodUnknown) // ADIOS2 Sst param fail TEST_F(SstParamFailTest, CompressionMethodUnknown) { - adios2::Params engineParams = - ParseEngineParams("CompressionMethod:unknown"); + adios2::Params engineParams = ParseEngineParams("CompressionMethod:unknown"); #if ADIOS2_USE_MPI adios2::ADIOS adios(MPI_COMM_WORLD); @@ -114,8 +109,7 @@ TEST_F(SstParamFailTest, CompressionMethodUnknown) io.SetParameters(engineParams); adios2::Engine engine; - EXPECT_THROW(engine = io.Open(fname, adios2::Mode::Write), - std::invalid_argument); + EXPECT_THROW(engine = io.Open(fname, adios2::Mode::Write), std::invalid_argument); // Close the file EXPECT_FALSE(engine); } @@ -138,8 +132,7 @@ TEST_F(SstParamFailTest, QueueFullPolicyUnknown) io.SetParameters(engineParams); adios2::Engine engine; - EXPECT_THROW(engine = io.Open(fname, adios2::Mode::Write), - std::invalid_argument); + EXPECT_THROW(engine = io.Open(fname, adios2::Mode::Write), std::invalid_argument); // Close the file EXPECT_FALSE(engine); } @@ -147,8 +140,7 @@ TEST_F(SstParamFailTest, QueueFullPolicyUnknown) // ADIOS2 Sst param fail TEST_F(SstParamFailTest, RendezvousReaderCountBad) { - adios2::Params engineParams = - ParseEngineParams("RendezvousReaderCount:unknown"); + adios2::Params engineParams = ParseEngineParams("RendezvousReaderCount:unknown"); #if ADIOS2_USE_MPI adios2::ADIOS adios(MPI_COMM_WORLD); @@ -163,8 +155,7 @@ TEST_F(SstParamFailTest, RendezvousReaderCountBad) io.SetParameters(engineParams); adios2::Engine engine; - EXPECT_THROW(engine = io.Open(fname, adios2::Mode::Write), - std::invalid_argument); + EXPECT_THROW(engine = io.Open(fname, adios2::Mode::Write), std::invalid_argument); // Close the file EXPECT_FALSE(engine); } @@ -187,8 +178,7 @@ TEST_F(SstParamFailTest, QueueLimitBad) io.SetParameters(engineParams); adios2::Engine engine; - EXPECT_THROW(engine = io.Open(fname, adios2::Mode::Write), - std::invalid_argument); + EXPECT_THROW(engine = io.Open(fname, adios2::Mode::Write), std::invalid_argument); // Close the file EXPECT_FALSE(engine); } @@ -196,8 +186,7 @@ TEST_F(SstParamFailTest, QueueLimitBad) // ADIOS2 Sst param fail TEST_F(SstParamFailTest, PreciousFirstTimestepParamTest) { - adios2::Params engineParams = - ParseEngineParams("FirstTimestepPrecious:unknown"); + adios2::Params engineParams = ParseEngineParams("FirstTimestepPrecious:unknown"); #if ADIOS2_USE_MPI adios2::ADIOS adios(MPI_COMM_WORLD); @@ -212,8 +201,7 @@ TEST_F(SstParamFailTest, PreciousFirstTimestepParamTest) io.SetEngine("Sst"); io.SetParameters(engineParams); - EXPECT_THROW(engine = io.Open(fname, adios2::Mode::Write), - std::invalid_argument); + EXPECT_THROW(engine = io.Open(fname, adios2::Mode::Write), std::invalid_argument); // Close the file EXPECT_FALSE(engine); } diff --git a/testing/adios2/engine/sst/TestSstWriterFails.cpp b/testing/adios2/engine/sst/TestSstWriterFails.cpp index 87545d12e5..f7af04a22e 100644 --- a/testing/adios2/engine/sst/TestSstWriterFails.cpp +++ b/testing/adios2/engine/sst/TestSstWriterFails.cpp @@ -51,8 +51,7 @@ static adios2::Params ParseEngineParams(std::string Input) std::getline(ss2, ParamName, ':'); if (!std::getline(ss2, ParamValue, ':')) { - throw std::invalid_argument("Engine parameter \"" + Param + - "\" missing value"); + throw std::invalid_argument("Engine parameter \"" + Param + "\" missing value"); } Ret[Trim(ParamName)] = Trim(ParamValue); } @@ -157,8 +156,7 @@ int main(int argc, char **argv) } else { - throw std::invalid_argument("Unknown argument \"" + - std::string(argv[1]) + "\""); + throw std::invalid_argument("Unknown argument \"" + std::string(argv[1]) + "\""); } argv++; argc--; diff --git a/testing/adios2/engine/staging-common/ParseArgs.h b/testing/adios2/engine/staging-common/ParseArgs.h index bb60b07929..46f4ae57fc 100644 --- a/testing/adios2/engine/staging-common/ParseArgs.h +++ b/testing/adios2/engine/staging-common/ParseArgs.h @@ -77,8 +77,7 @@ static adios2::Params ParseEngineParams(std::string Input) std::getline(ss2, ParamName, '='); if (!std::getline(ss2, ParamValue, '=')) { - throw std::invalid_argument("Engine parameter \"" + Param + - "\" missing value"); + throw std::invalid_argument("Engine parameter \"" + Param + "\" missing value"); } Ret[Trim(ParamName)] = Trim(ParamValue); } @@ -102,8 +101,7 @@ void ParseArgs(int argc, char **argv) { std::istringstream ss(argv[2]); if (!(ss >> Nx)) - std::cerr << "Invalid number for nx (base element count) " - << argv[1] << '\n'; + std::cerr << "Invalid number for nx (base element count) " << argv[1] << '\n'; argv++; argc--; } @@ -192,8 +190,7 @@ void ParseArgs(int argc, char **argv) } else { - std::cerr << "Invalid mode for --write_mode " << argv[2] - << std::endl; + std::cerr << "Invalid mode for --write_mode " << argv[2] << std::endl; } argv++; argc--; @@ -210,8 +207,7 @@ void ParseArgs(int argc, char **argv) } else { - std::cerr << "Invalid mode for --write_mode " << argv[2] - << std::endl; + std::cerr << "Invalid mode for --write_mode " << argv[2] << std::endl; } argv++; argc--; @@ -278,15 +274,13 @@ void ParseArgs(int argc, char **argv) else if (std::string(argv[1]) == "--round_robin") { if (OnDemand) - std::cerr << "OnDemand already specified, round robin ignored" - << std::endl; + std::cerr << "OnDemand already specified, round robin ignored" << std::endl; RoundRobin = true; } else if (std::string(argv[1]) == "--on_demand") { if (RoundRobin) - std::cerr << "RoundRobin already specified, on_demand ignored" - << std::endl; + std::cerr << "RoundRobin already specified, on_demand ignored" << std::endl; OnDemand = true; } else if (std::string(argv[1]) == "--no_data") @@ -297,8 +291,7 @@ void ParseArgs(int argc, char **argv) { std::istringstream ss(argv[2]); if (!(ss >> NoDataNode)) - std::cerr << "Invalid number for --no_data_node argument" - << argv[1] << '\n'; + std::cerr << "Invalid number for --no_data_node argument" << argv[1] << '\n'; argv++; argc--; } @@ -306,8 +299,7 @@ void ParseArgs(int argc, char **argv) { std::istringstream ss(argv[2]); if (!(ss >> LocalCount)) - std::cerr << "Invalid number for --local_count argument" - << argv[1] << '\n'; + std::cerr << "Invalid number for --local_count argument" << argv[1] << '\n'; argv++; argc--; } @@ -315,8 +307,7 @@ void ParseArgs(int argc, char **argv) { std::istringstream ss(argv[2]); if (!(ss >> DataSize)) - std::cerr << "Invalid number for --data_size argument" - << argv[1] << '\n'; + std::cerr << "Invalid number for --data_size argument" << argv[1] << '\n'; argv++; argc--; } @@ -359,8 +350,7 @@ void ParseArgs(int argc, char **argv) else { - throw std::invalid_argument("Unknown argument \"" + - std::string(argv[1]) + "\""); + throw std::invalid_argument("Unknown argument \"" + std::string(argv[1]) + "\""); } } argv++; diff --git a/testing/adios2/engine/staging-common/TestCommonClient.cpp b/testing/adios2/engine/staging-common/TestCommonClient.cpp index 58a0f22037..e93df37075 100644 --- a/testing/adios2/engine/staging-common/TestCommonClient.cpp +++ b/testing/adios2/engine/staging-common/TestCommonClient.cpp @@ -117,8 +117,7 @@ TEST_F(SstReadTest, ADIOS2SstRead) if (ExpectedStep == adios2::MaxSizeT) { EXPECT_EQ(currentStep, 0); - std::cout << "Got my expected first timestep Zero!" - << std::endl; + std::cout << "Got my expected first timestep Zero!" << std::endl; ExpectedStep = 0; } else if (ExpectedStep == 1) @@ -130,8 +129,7 @@ TEST_F(SstReadTest, ADIOS2SstRead) } if ((ExpectedStep == adios2::MaxSizeT) || Latest || Discard) { - if ((ExpectedStep != adios2::MaxSizeT) && - (ExpectedStep != currentStep)) + if ((ExpectedStep != adios2::MaxSizeT) && (ExpectedStep != currentStep)) { SkippedSteps++; } @@ -206,10 +204,8 @@ TEST_F(SstReadTest, ADIOS2SstRead) ASSERT_EQ(var_time.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_time.Shape()[0], writerSize); - long unsigned int myStart = - (long unsigned int)(writerSize * Nx / mpiSize) * mpiRank; - long unsigned int myLength = - (long unsigned int)((writerSize * Nx + mpiSize - 1) / mpiSize); + long unsigned int myStart = (long unsigned int)(writerSize * Nx / mpiSize) * mpiRank; + long unsigned int myLength = (long unsigned int)((writerSize * Nx + mpiSize - 1) / mpiSize); if (myStart + myLength > writerSize * Nx) { @@ -276,16 +272,15 @@ TEST_F(SstReadTest, ADIOS2SstRead) } if (IncreasingDelay && DelayWhileHoldingStep) { - std::this_thread::sleep_for(std::chrono::milliseconds( - DelayMS)); /* sleep for DelayMS milliseconds */ + std::this_thread::sleep_for( + std::chrono::milliseconds(DelayMS)); /* sleep for DelayMS milliseconds */ DelayMS += 200; } try { engine.EndStep(); - EXPECT_EQ(validateCommonTestData(myStart, myLength, currentStep, 0), - 0); + EXPECT_EQ(validateCommonTestData(myStart, myLength, currentStep, 0), 0); write_times.push_back(write_time); if (AdvancingAttrs) { @@ -296,15 +291,13 @@ TEST_F(SstReadTest, ADIOS2SstRead) const std::string r64_Single = std::string("r64_PerStep_") + std::to_string(step); auto attr_r64 = io.InquireAttribute(r64_Single); - std::cout << "Testing for attribute " << r64_Single - << std::endl; + std::cout << "Testing for attribute " << r64_Single << std::endl; if (step <= currentStep) { EXPECT_TRUE(attr_r64); ASSERT_EQ(attr_r64.Data().size() == 1, true); ASSERT_EQ(attr_r64.Type(), adios2::GetType()); - ASSERT_EQ(attr_r64.Data().front(), - (double)(step * 10.0)); + ASSERT_EQ(attr_r64.Data().front(), (double)(step * 10.0)); } else { @@ -330,18 +323,16 @@ TEST_F(SstReadTest, ADIOS2SstRead) break; } } - std::cout << "Reader finished with step " << ExpectedStep - 1 - << std::endl; + std::cout << "Reader finished with step " << ExpectedStep - 1 << std::endl; if (IncreasingDelay && !DelayWhileHoldingStep) { - std::this_thread::sleep_for(std::chrono::milliseconds( - DelayMS)); /* sleep for DelayMS milliseconds */ + std::this_thread::sleep_for( + std::chrono::milliseconds(DelayMS)); /* sleep for DelayMS milliseconds */ DelayMS += 200; } } - if ((write_times.size() > 1) && - ((write_times.back() - write_times.front()) > 1)) + if ((write_times.size() > 1) && ((write_times.back() - write_times.front()) > 1)) { TimeGapDetected++; } @@ -373,8 +364,8 @@ TEST_F(SstReadTest, ADIOS2SstRead) } if (NonBlockingBeginStep) { - std::cout << "Number of BeginSteps where we failed timeout is " - << BeginStepFailedPolls << std::endl; + std::cout << "Number of BeginSteps where we failed timeout is " << BeginStepFailedPolls + << std::endl; EXPECT_TRUE(BeginStepFailedPolls); } @@ -395,8 +386,7 @@ int main(int argc, char **argv) ParseArgs(argc, argv); #if ADIOS2_USE_MPI int provided; - int thread_support_level = - (engine == "SST") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; + int thread_support_level = (engine == "SST") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestCommonRead.cpp b/testing/adios2/engine/staging-common/TestCommonRead.cpp index 654d65a38b..26e71ab738 100644 --- a/testing/adios2/engine/staging-common/TestCommonRead.cpp +++ b/testing/adios2/engine/staging-common/TestCommonRead.cpp @@ -239,8 +239,7 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) engine.BlocksInfo(var_r64, engine.CurrentStep()); EXPECT_EQ(i8Info.size(), writerSize); EXPECT_EQ(i16Info.size(), writerSize); - EXPECT_TRUE((i32Info.size() == writerSize) || - (i32Info.size() == writerSize * 3)); + EXPECT_TRUE((i32Info.size() == writerSize) || (i32Info.size() == writerSize * 3)); EXPECT_EQ(i64Info.size(), writerSize); EXPECT_EQ(r32Info.size(), writerSize); EXPECT_EQ(r64Info.size(), writerSize); @@ -257,10 +256,10 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) if (var_c32) { - const std::vector>::Info> - c32Info = engine.BlocksInfo(var_c32, engine.CurrentStep()); - const std::vector>::Info> - c64Info = engine.BlocksInfo(var_c64, engine.CurrentStep()); + const std::vector>::Info> c32Info = + engine.BlocksInfo(var_c32, engine.CurrentStep()); + const std::vector>::Info> c64Info = + engine.BlocksInfo(var_c64, engine.CurrentStep()); EXPECT_EQ(c32Info.size(), writerSize); EXPECT_EQ(c64Info.size(), writerSize); for (size_t i = 0; i < writerSize; ++i) @@ -270,10 +269,8 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) } } - long unsigned int myStart = - (long unsigned int)(writerSize * Nx / mpiSize) * mpiRank; - long unsigned int myLength = - (long unsigned int)((writerSize * Nx + mpiSize - 1) / mpiSize); + long unsigned int myStart = (long unsigned int)(writerSize * Nx / mpiSize) * mpiRank; + long unsigned int myLength = (long unsigned int)((writerSize * Nx + mpiSize - 1) / mpiSize); if (myStart + myLength > writerSize * Nx) { @@ -336,8 +333,7 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) engine.Get(var_r32, in_R32.data(), GlobalReadMode); engine.Get(var_r64, in_R64.data(), GlobalReadMode); if (!mpiRank) - engine.Get(var_time, (int64_t *)&write_time, - GlobalReadMode); + engine.Get(var_time, (int64_t *)&write_time, GlobalReadMode); } else { @@ -354,8 +350,7 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) if (var_r64_2d) engine.Get(var_r64_2d, in_R64_2d.data(), GlobalReadMode); if (var_r64_2d_rev) - engine.Get(var_r64_2d_rev, in_R64_2d_rev.data(), - GlobalReadMode); + engine.Get(var_r64_2d_rev, in_R64_2d_rev.data(), GlobalReadMode); if (LockGeometry) { // we'll never change our data decomposition @@ -368,8 +363,8 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) int result = validateCommonTestData(myStart, myLength, t, !var_c32); if (result != 0) { - std::cout << "Read Data Validation failed on node " << mpiRank - << " timestep " << t << std::endl; + std::cout << "Read Data Validation failed on node " << mpiRank << " timestep " << t + << std::endl; } EXPECT_EQ(result, 0); } @@ -380,8 +375,8 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) int result = validateCommonTestData(myStart, myLength, t, !var_c32); if (result != 0) { - std::cout << "Read Data Validation failed on node " << mpiRank - << " timestep " << t << std::endl; + std::cout << "Read Data Validation failed on node " << mpiRank << " timestep " << t + << std::endl; } EXPECT_EQ(result, 0); if (AdvancingAttrs) @@ -393,15 +388,13 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) const std::string r64_Single = std::string("r64_PerStep_") + std::to_string(step); auto attr_r64 = io.InquireAttribute(r64_Single); - std::cout << "Testing for attribute " << r64_Single - << std::endl; + std::cout << "Testing for attribute " << r64_Single << std::endl; if (step <= currentStep) { EXPECT_TRUE(attr_r64); ASSERT_EQ(attr_r64.Data().size() == 1, true); ASSERT_EQ(attr_r64.Type(), adios2::GetType()); - ASSERT_EQ(attr_r64.Data().front(), - (double)(step * 10.0)); + ASSERT_EQ(attr_r64.Data().front(), (double)(step * 10.0)); } else { @@ -418,9 +411,7 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) { if (NoDataNode != -1) { - EXPECT_EQ( - validateCommonTestDataR64(myStart, myLength, t, !var_c32), - 0); + EXPECT_EQ(validateCommonTestDataR64(myStart, myLength, t, !var_c32), 0); } } ++t; @@ -428,14 +419,13 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) if (!mpiRank) { - std::cout << "Reader Open took " << std::fixed << std::setprecision(9) - << timeOpen.count() << " seconds" << std::endl; + std::cout << "Reader Open took " << std::fixed << std::setprecision(9) << timeOpen.count() + << " seconds" << std::endl; for (size_t i = 0; i < begin_times.size(); ++i) { - std::cout << "Reader BeginStep t = " << i - << " had status = " << begin_statuses[i] << " after " - << std::fixed << std::setprecision(9) - << begin_times[i].count() << " seconds" << std::endl; + std::cout << "Reader BeginStep t = " << i << " had status = " << begin_statuses[i] + << " after " << std::fixed << std::setprecision(9) << begin_times[i].count() + << " seconds" << std::endl; } } @@ -485,9 +475,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestCommonReadAttrs.cpp b/testing/adios2/engine/staging-common/TestCommonReadAttrs.cpp index 89d0e70eee..f9718d89ac 100644 --- a/testing/adios2/engine/staging-common/TestCommonReadAttrs.cpp +++ b/testing/adios2/engine/staging-common/TestCommonReadAttrs.cpp @@ -237,10 +237,8 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) ASSERT_EQ(var_time.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_time.Shape()[0], writerSize); - long unsigned int myStart = - (long unsigned int)(writerSize * Nx / mpiSize) * mpiRank; - long unsigned int myLength = - (long unsigned int)((writerSize * Nx + mpiSize - 1) / mpiSize); + long unsigned int myStart = (long unsigned int)(writerSize * Nx / mpiSize) * mpiRank; + long unsigned int myLength = (long unsigned int)((writerSize * Nx + mpiSize - 1) / mpiSize); if (myStart + myLength > writerSize * Nx) { @@ -312,8 +310,8 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) int result = validateCommonTestData(myStart, myLength, t, !var_c32); if (result != 0) { - std::cout << "Read Data Validation failed on node " << mpiRank - << " timestep " << t << std::endl; + std::cout << "Read Data Validation failed on node " << mpiRank << " timestep " << t + << std::endl; } EXPECT_EQ(result, 0); write_times.push_back(write_time); @@ -322,19 +320,17 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) if (!mpiRank) { - std::cout << "Reader Open took " << std::fixed << std::setprecision(9) - << timeOpen.count() << " seconds" << std::endl; + std::cout << "Reader Open took " << std::fixed << std::setprecision(9) << timeOpen.count() + << " seconds" << std::endl; for (size_t i = 0; i < begin_times.size(); ++i) { - std::cout << "Reader BeginStep t = " << i - << " had status = " << begin_statuses[i] << " after " - << std::fixed << std::setprecision(9) - << begin_times[i].count() << " seconds" << std::endl; + std::cout << "Reader BeginStep t = " << i << " had status = " << begin_statuses[i] + << " after " << std::fixed << std::setprecision(9) << begin_times[i].count() + << " seconds" << std::endl; } } - if ((write_times.size() > 1) && - ((write_times.back() - write_times.front()) > 1)) + if ((write_times.size() > 1) && ((write_times.back() - write_times.front()) > 1)) { TimeGapDetected++; } @@ -368,9 +364,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestCommonReadLocal.cpp b/testing/adios2/engine/staging-common/TestCommonReadLocal.cpp index 8873dc03bd..4e32b6b85d 100644 --- a/testing/adios2/engine/staging-common/TestCommonReadLocal.cpp +++ b/testing/adios2/engine/staging-common/TestCommonReadLocal.cpp @@ -86,10 +86,7 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) for (int index = 0; index < LocalCount; index++) { int indexToRead = rankToRead * LocalCount; - ASSERT_EQ(engine.BlocksInfo(var_r32, currentStep) - .at(indexToRead) - .Count[0], - hisLength); + ASSERT_EQ(engine.BlocksInfo(var_r32, currentStep).at(indexToRead).Count[0], hisLength); } const adios2::Dims start_time{0}; @@ -119,9 +116,8 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) float expected = (float)j + 10 * i; if (in_R32_blocks[index][i] != expected) { - std::cout << "Expected " << expected << ", got " - << in_R32_blocks[index][i] << " for in_R32[" << i - << "][" << index << "[" << i << "], timestep " + std::cout << "Expected " << expected << ", got " << in_R32_blocks[index][i] + << " for in_R32[" << i << "][" << index << "[" << i << "], timestep " << t << std::endl; result++; } @@ -130,16 +126,15 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) if (result != 0) { - std::cout << "Read Data Validation failed on node " << mpiRank - << " timestep " << t << std::endl; + std::cout << "Read Data Validation failed on node " << mpiRank << " timestep " << t + << std::endl; } EXPECT_EQ(result, 0); write_times.push_back(write_time); ++t; } - if ((write_times.size() > 1) && - ((write_times.back() - write_times.front()) > 1)) + if ((write_times.size() > 1) && ((write_times.back() - write_times.front()) > 1)) { TimeGapDetected++; } @@ -175,9 +170,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestCommonReadR64.cpp b/testing/adios2/engine/staging-common/TestCommonReadR64.cpp index 274aaacba0..f84961d073 100644 --- a/testing/adios2/engine/staging-common/TestCommonReadR64.cpp +++ b/testing/adios2/engine/staging-common/TestCommonReadR64.cpp @@ -33,9 +33,8 @@ int validateCommonTestR64(int start, int length, size_t step) { if (in_R64[i] != (double)((i + start) * 10 + step)) { - std::cout << "Expected " << (double)((i + start) * 10 + step) - << ", got " << in_R64[i] << " for in_R64[" << i - << "](global[" << i + start << "])" << std::endl; + std::cout << "Expected " << (double)((i + start) * 10 + step) << ", got " << in_R64[i] + << " for in_R64[" << i << "](global[" << i + start << "])" << std::endl; failures++; } } @@ -101,10 +100,8 @@ TEST_F(CommonReadTest, ADIOS2CommonRead) ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_r64.Shape()[0], writerSize * Nx); - long unsigned int myStart = - (long unsigned int)(writerSize * Nx / mpiSize) * mpiRank; - long unsigned int myLength = - (long unsigned int)((writerSize * Nx + mpiSize - 1) / mpiSize); + long unsigned int myStart = (long unsigned int)(writerSize * Nx / mpiSize) * mpiRank; + long unsigned int myLength = (long unsigned int)((writerSize * Nx + mpiSize - 1) / mpiSize); if (myStart + myLength > writerSize * Nx) { @@ -122,8 +119,8 @@ TEST_F(CommonReadTest, ADIOS2CommonRead) int result = validateCommonTestR64(myStart, myLength, t); if (result != 0) { - std::cout << "Read Data Validation failed on node " << mpiRank - << " timestep " << t << std::endl; + std::cout << "Read Data Validation failed on node " << mpiRank << " timestep " << t + << std::endl; } EXPECT_EQ(result, 0); @@ -148,9 +145,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestCommonReadShared.cpp b/testing/adios2/engine/staging-common/TestCommonReadShared.cpp index dc2d02f754..86a5b011f8 100644 --- a/testing/adios2/engine/staging-common/TestCommonReadShared.cpp +++ b/testing/adios2/engine/staging-common/TestCommonReadShared.cpp @@ -90,11 +90,9 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) ASSERT_EQ(var2.Shape()[0], (writerSize + 1) * Nx); - long unsigned int myStart = - (long unsigned int)((writerSize + 1) * Nx / mpiSize) * mpiRank; + long unsigned int myStart = (long unsigned int)((writerSize + 1) * Nx / mpiSize) * mpiRank; long unsigned int myLength = - (long unsigned int)(((writerSize + 1) * Nx + mpiSize - 1) / - mpiSize); + (long unsigned int)(((writerSize + 1) * Nx + mpiSize - 1) / mpiSize); if (myStart + myLength > writerSize * Nx) { @@ -117,14 +115,13 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) engine1.EndStep(); engine2.EndStep(); - int result = validateSimpleForwardData(in_R64_1, 0, myStart, myLength, - (writerSize + 1) * Nx); - result |= validateSimpleReverseData(in_R64_2, 0, myStart, myLength, - (writerSize + 1) * Nx); + int result = + validateSimpleForwardData(in_R64_1, 0, myStart, myLength, (writerSize + 1) * Nx); + result |= validateSimpleReverseData(in_R64_2, 0, myStart, myLength, (writerSize + 1) * Nx); if (result != 0) { - std::cout << "Read Data Validation failed on node " << mpiRank - << " timestep " << t << std::endl; + std::cout << "Read Data Validation failed on node " << mpiRank << " timestep " << t + << std::endl; } EXPECT_EQ(result, 0); @@ -149,9 +146,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestCommonServer.cpp b/testing/adios2/engine/staging-common/TestCommonServer.cpp index ec0a435845..60ff231b3d 100644 --- a/testing/adios2/engine/staging-common/TestCommonServer.cpp +++ b/testing/adios2/engine/staging-common/TestCommonServer.cpp @@ -120,8 +120,7 @@ TEST_F(CommonServerTest, ADIOS2CommonServer) adios2::Box sel({mpiRank * Nx}, {Nx}); adios2::Box sel2({mpiRank * Nx, 0}, {Nx, 2}); adios2::Box sel3({0, mpiRank * Nx}, {2, Nx}); - adios2::Box sel_time( - {static_cast(mpiRank)}, {1}); + adios2::Box sel_time({static_cast(mpiRank)}, {1}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -160,14 +159,13 @@ TEST_F(CommonServerTest, ADIOS2CommonServer) } if (AdvancingAttrs) { - const std::string r64_Single = - std::string("r64_PerStep_") + std::to_string(step); + const std::string r64_Single = std::string("r64_PerStep_") + std::to_string(step); io.DefineAttribute(r64_Single, (double)(step * 10.0)); } engine.EndStep(); std::cout << "Writer finished step " << step << std::endl; - std::this_thread::sleep_for(std::chrono::milliseconds( - DelayMS)); /* sleep for DelayMS milliseconds */ + std::this_thread::sleep_for( + std::chrono::milliseconds(DelayMS)); /* sleep for DelayMS milliseconds */ step++; { int MyCloseNow = 0; @@ -176,16 +174,15 @@ TEST_F(CommonServerTest, ADIOS2CommonServer) MyCloseNow = 1; } #if ADIOS2_USE_MPI - MPI_Allreduce(&MyCloseNow, &GlobalCloseNow, 1, MPI_INT, MPI_LOR, - MPI_COMM_WORLD); + MPI_Allreduce(&MyCloseNow, &GlobalCloseNow, 1, MPI_INT, MPI_LOR, MPI_COMM_WORLD); #else GlobalCloseNow = MyCloseNow; #endif } if (GlobalCloseNow) { - std::cout << "Writer closing stream because file \"" - << shutdown_name << "\" was noticed" << std::endl; + std::cout << "Writer closing stream because file \"" << shutdown_name + << "\" was noticed" << std::endl; } } std::cout << "Writer closing stream normally" << std::endl; @@ -202,9 +199,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestCommonSpanRead.cpp b/testing/adios2/engine/staging-common/TestCommonSpanRead.cpp index b9b753ae51..6956bc271a 100644 --- a/testing/adios2/engine/staging-common/TestCommonSpanRead.cpp +++ b/testing/adios2/engine/staging-common/TestCommonSpanRead.cpp @@ -72,10 +72,8 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) /* take the first size as something that gives us writer size */ writerSize = var.Shape()[0] / 10; - long unsigned int myStart = - (long unsigned int)(writerSize * Nx / mpiSize) * mpiRank; - long unsigned int myLength = - (long unsigned int)(((writerSize)*Nx + mpiSize) / mpiSize); + long unsigned int myStart = (long unsigned int)(writerSize * Nx / mpiSize) * mpiRank; + long unsigned int myLength = (long unsigned int)(((writerSize)*Nx + mpiSize) / mpiSize); if (myStart + myLength > writerSize * Nx) { @@ -95,16 +93,15 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) engine.Get(var, in_R64.data()); engine.EndStep(); - int result = validateSimpleForwardData(in_R64, t, myStart, myLength, - writerSize * Nx); + int result = validateSimpleForwardData(in_R64, t, myStart, myLength, writerSize * Nx); EXPECT_EQ(VarMin, t * 100); EXPECT_EQ(VarMax, t * 100 + writerSize * 10 - 1); if (result != 0) { - std::cout << "Read Data Validation failed on node " << mpiRank - << " timestep " << t << std::endl; + std::cout << "Read Data Validation failed on node " << mpiRank << " timestep " << t + << std::endl; } EXPECT_EQ(result, 0); @@ -128,9 +125,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); int key; diff --git a/testing/adios2/engine/staging-common/TestCommonSpanWrite.cpp b/testing/adios2/engine/staging-common/TestCommonSpanWrite.cpp index d69dd6ad93..28b0c0ae77 100644 --- a/testing/adios2/engine/staging-common/TestCommonSpanWrite.cpp +++ b/testing/adios2/engine/staging-common/TestCommonSpanWrite.cpp @@ -88,8 +88,7 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) var.SetSelection(sel); adios2::Variable::Span VarSpan = engine.Put(var); - generateSimpleForwardData(VarSpan.data(), (int)step, myStart, myCount, - (int)Nx * mpiSize); + generateSimpleForwardData(VarSpan.data(), (int)step, myStart, myCount, (int)Nx * mpiSize); engine.EndStep(); } @@ -107,9 +106,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); int key; diff --git a/testing/adios2/engine/staging-common/TestCommonWrite.cpp b/testing/adios2/engine/staging-common/TestCommonWrite.cpp index 123807e9e4..fca84ee92b 100644 --- a/testing/adios2/engine/staging-common/TestCommonWrite.cpp +++ b/testing/adios2/engine/staging-common/TestCommonWrite.cpp @@ -62,8 +62,7 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) r64_Nx = 2 * Nx; } } - std::cout << "Nx is set to " << r64_Nx << " on Rank " << mpiRank - << std::endl; + std::cout << "Nx is set to " << r64_Nx << " on Rank " << mpiRank << std::endl; // Declare 1D variables (NumOfProcesses * Nx) // The local process' part (start, count) can be defined now or later @@ -97,22 +96,15 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) (void)io.DefineVariable("i32", shape, start, count); (void)io.DefineVariable("i64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); - auto var_r64 = - io.DefineVariable("r64", shape, start_r64, count_r64); - (void)io.DefineVariable>("c32", shape, start, - count); - (void)io.DefineVariable>("c64", shape, start, - count); - auto var_r64_2d = - io.DefineVariable("r64_2d", shape2, start2, count2); - auto var_r64_2d_rev = - io.DefineVariable("r64_2d_rev", shape3, start3, count3); - (void)io.DefineVariable("time", time_shape, time_start, - time_count); + auto var_r64 = io.DefineVariable("r64", shape, start_r64, count_r64); + (void)io.DefineVariable>("c32", shape, start, count); + (void)io.DefineVariable>("c64", shape, start, count); + auto var_r64_2d = io.DefineVariable("r64_2d", shape2, start2, count2); + auto var_r64_2d_rev = io.DefineVariable("r64_2d_rev", shape3, start3, count3); + (void)io.DefineVariable("time", time_shape, time_start, time_count); if (CompressZfp) { - adios2::Operator ZfpOp = - adios.DefineOperator("zfpCompressor", "zfp"); + adios2::Operator ZfpOp = adios.DefineOperator("zfpCompressor", "zfp"); var_r32.AddOperation(ZfpOp, {{"rate", "20"}}); var_r64.AddOperation(ZfpOp, {{"rate", "20"}}); var_r64_2d.AddOperation(ZfpOp, {{"rate", "20"}}); @@ -129,8 +121,7 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) for (int step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - generateCommonTestData((int)step, mpiRank, mpiSize, (int)Nx, - (int)r64_Nx); + generateCommonTestData((int)step, mpiRank, mpiSize, (int)Nx, (int)r64_Nx); engine.BeginStep(); // Retrieve the variables that previously went out of scope @@ -153,8 +144,7 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) adios2::Box sel_r64({mpiRank * Nx}, {r64_Nx}); adios2::Box sel2({mpiRank * Nx, 0}, {Nx, 2}); adios2::Box sel3({0, mpiRank * Nx}, {2, Nx}); - adios2::Box sel_time( - {static_cast(mpiRank)}, {1}); + adios2::Box sel_time({static_cast(mpiRank)}, {1}); if (ZeroDataVar) { if (mpiRank == 1) @@ -226,14 +216,13 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) } if (AdvancingAttrs) { - const std::string r64_Single = - std::string("r64_PerStep_") + std::to_string(step); + const std::string r64_Single = std::string("r64_PerStep_") + std::to_string(step); io.DefineAttribute(r64_Single, (double)(step * 10.0)); std::cout << "Defining attribute " << r64_Single << std::endl; } engine.EndStep(); - std::this_thread::sleep_for(std::chrono::milliseconds( - DelayMS)); /* sleep for DelayMS milliseconds */ + std::this_thread::sleep_for( + std::chrono::milliseconds(DelayMS)); /* sleep for DelayMS milliseconds */ } // Close the file @@ -254,9 +243,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestCommonWriteAttrs.cpp b/testing/adios2/engine/staging-common/TestCommonWriteAttrs.cpp index 70a2dce98b..af6d818f29 100644 --- a/testing/adios2/engine/staging-common/TestCommonWriteAttrs.cpp +++ b/testing/adios2/engine/staging-common/TestCommonWriteAttrs.cpp @@ -71,20 +71,14 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) (void)io.DefineVariable("i64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); auto var_r64 = io.DefineVariable("r64", shape, start, count); - (void)io.DefineVariable>("c32", shape, start, - count); - (void)io.DefineVariable>("c64", shape, start, - count); - auto var_r64_2d = - io.DefineVariable("r64_2d", shape2, start2, count2); - auto var_r64_2d_rev = - io.DefineVariable("r64_2d_rev", shape3, start3, count3); - (void)io.DefineVariable("time", time_shape, time_start, - time_count); + (void)io.DefineVariable>("c32", shape, start, count); + (void)io.DefineVariable>("c64", shape, start, count); + auto var_r64_2d = io.DefineVariable("r64_2d", shape2, start2, count2); + auto var_r64_2d_rev = io.DefineVariable("r64_2d_rev", shape3, start3, count3); + (void)io.DefineVariable("time", time_shape, time_start, time_count); if (CompressZfp) { - adios2::Operator ZfpOp = - adios.DefineOperator("zfpCompressor", "zfp"); + adios2::Operator ZfpOp = adios.DefineOperator("zfpCompressor", "zfp"); var_r32.AddOperation(ZfpOp, {{"rate", "20"}}); var_r64.AddOperation(ZfpOp, {{"rate", "20"}}); var_r64_2d.AddOperation(ZfpOp, {{"rate", "20"}}); @@ -151,8 +145,7 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) adios2::Box sel({mpiRank * Nx}, {Nx}); adios2::Box sel2({mpiRank * Nx, 0}, {Nx, 2}); adios2::Box sel3({0, mpiRank * Nx}, {2, Nx}); - adios2::Box sel_time( - {static_cast(mpiRank)}, {1}); + adios2::Box sel_time({static_cast(mpiRank)}, {1}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -186,8 +179,7 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) std::time_t localtime = std::time(NULL); engine.Put(var_time, (int64_t *)&localtime); if (ModifiableAttributes) - io.DefineAttribute( - r64_Single, (double)3.14159 + (double)step, "", "/", true); + io.DefineAttribute(r64_Single, (double)3.14159 + (double)step, "", "/", true); engine.EndStep(); } @@ -204,9 +196,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestCommonWriteLocal.cpp b/testing/adios2/engine/staging-common/TestCommonWriteLocal.cpp index cedd61d317..b45ea720ae 100644 --- a/testing/adios2/engine/staging-common/TestCommonWriteLocal.cpp +++ b/testing/adios2/engine/staging-common/TestCommonWriteLocal.cpp @@ -66,8 +66,7 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) adios2::Dims time_count{1}; (void)io.DefineVariable("r32", {}, {}, count); - (void)io.DefineVariable("time", time_shape, time_start, - time_count); + (void)io.DefineVariable("time", time_shape, time_start, time_count); } // Create the Engine @@ -99,8 +98,8 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) std::time_t localtime = std::time(NULL); engine.Put(var_time, (int64_t *)&localtime); engine.EndStep(); - std::this_thread::sleep_for(std::chrono::milliseconds( - DelayMS)); /* sleep for DelayMS milliseconds */ + std::this_thread::sleep_for( + std::chrono::milliseconds(DelayMS)); /* sleep for DelayMS milliseconds */ } // Close the file @@ -118,9 +117,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestCommonWriteModes.cpp b/testing/adios2/engine/staging-common/TestCommonWriteModes.cpp index 16e46584d9..0c706fc2ea 100644 --- a/testing/adios2/engine/staging-common/TestCommonWriteModes.cpp +++ b/testing/adios2/engine/staging-common/TestCommonWriteModes.cpp @@ -71,20 +71,14 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) (void)io.DefineVariable("i64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); auto var_r64 = io.DefineVariable("r64", shape, start, count); - (void)io.DefineVariable>("c32", shape, start, - count); - (void)io.DefineVariable>("c64", shape, start, - count); - auto var_r64_2d = - io.DefineVariable("r64_2d", shape2, start2, count2); - auto var_r64_2d_rev = - io.DefineVariable("r64_2d_rev", shape3, start3, count3); - (void)io.DefineVariable("time", time_shape, time_start, - time_count); + (void)io.DefineVariable>("c32", shape, start, count); + (void)io.DefineVariable>("c64", shape, start, count); + auto var_r64_2d = io.DefineVariable("r64_2d", shape2, start2, count2); + auto var_r64_2d_rev = io.DefineVariable("r64_2d_rev", shape3, start3, count3); + (void)io.DefineVariable("time", time_shape, time_start, time_count); if (CompressZfp) { - adios2::Operator ZfpOp = - adios.DefineOperator("zfpCompressor", "zfp"); + adios2::Operator ZfpOp = adios.DefineOperator("zfpCompressor", "zfp"); var_r32.AddOperation(ZfpOp, {{"rate", "20"}}); var_r64.AddOperation(ZfpOp, {{"rate", "20"}}); var_r64_2d.AddOperation(ZfpOp, {{"rate", "20"}}); @@ -124,8 +118,7 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) adios2::Box sel({mpiRank * Nx}, {Nx}); adios2::Box sel2({mpiRank * Nx, 0}, {Nx, 2}); adios2::Box sel3({0, mpiRank * Nx}, {2, Nx}); - adios2::Box sel_time( - {static_cast(mpiRank)}, {1}); + adios2::Box sel_time({static_cast(mpiRank)}, {1}); var_i8.SetSelection(sel); var_i16.SetSelection(sel); var_i32.SetSelection(sel); @@ -190,9 +183,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestCommonWriteShared.cpp b/testing/adios2/engine/staging-common/TestCommonWriteShared.cpp index c197950f2a..8487a445bc 100644 --- a/testing/adios2/engine/staging-common/TestCommonWriteShared.cpp +++ b/testing/adios2/engine/staging-common/TestCommonWriteShared.cpp @@ -169,9 +169,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestData.h b/testing/adios2/engine/staging-common/TestData.h index 1bd24b8428..9412cdb1ce 100644 --- a/testing/adios2/engine/staging-common/TestData.h +++ b/testing/adios2/engine/staging-common/TestData.h @@ -58,8 +58,7 @@ std::complex in_scalar_C64; double data_scalar_R64; -void generateSimpleForwardData(double *data_forward, int step, int start, - int count, int total_size) +void generateSimpleForwardData(double *data_forward, int step, int start, int count, int total_size) { int64_t j = 100 * step + start; @@ -69,17 +68,16 @@ void generateSimpleForwardData(double *data_forward, int step, int start, } } -void generateSimpleForwardData(std::vector &data_forward, int step, - int start, int count, int total_size) +void generateSimpleForwardData(std::vector &data_forward, int step, int start, int count, + int total_size) { data_forward.clear(); data_forward.resize(count); - generateSimpleForwardData(data_forward.data(), step, start, count, - total_size); + generateSimpleForwardData(data_forward.data(), step, start, count, total_size); } -void generateSimpleReverseData(std::vector &data_reverse, int step, - int start, int count, int total_size) +void generateSimpleReverseData(std::vector &data_reverse, int step, int start, int count, + int total_size) { int64_t j = 100 * step + total_size - start; @@ -90,8 +88,8 @@ void generateSimpleReverseData(std::vector &data_reverse, int step, } } -int validateSimpleForwardData(std::vector &data_forward, int step, - int64_t start, int64_t count, int64_t total_size) +int validateSimpleForwardData(std::vector &data_forward, int step, int64_t start, + int64_t count, int64_t total_size) { int ret = 0; int64_t j = 100 * step + start; @@ -100,17 +98,16 @@ int validateSimpleForwardData(std::vector &data_forward, int step, { if (data_forward[i] != (double)j + i) { - std::cout << "Expected data_forward[" << i << "] to be " - << (double)j + i << " got " << data_forward[i] - << std::endl; + std::cout << "Expected data_forward[" << i << "] to be " << (double)j + i << " got " + << data_forward[i] << std::endl; ret = 1; } } return ret; } -int validateSimpleReverseData(std::vector &data_reverse, int step, - int64_t start, int64_t count, int64_t total_size) +int validateSimpleReverseData(std::vector &data_reverse, int step, int64_t start, + int64_t count, int64_t total_size) { int ret = 0; int64_t j = 100 * step + total_size - start; @@ -119,9 +116,8 @@ int validateSimpleReverseData(std::vector &data_reverse, int step, { if (data_reverse[i] != (double)j - i) { - std::cout << "Expected data_reverse[" << i << "] to be " - << (double)j - i << " got " << data_reverse[i] - << std::endl; + std::cout << "Expected data_reverse[" << i << "] to be " << (double)j - i << " got " + << data_reverse[i] << std::endl; ret = 1; } } @@ -179,16 +175,14 @@ void generateCommonTestData(int step, int rank, int size, int Nx, int r64_Nx) } } -int validateCommonTestData(int start, int length, size_t step, - int missing_end_data, bool varying = false, - int writerRank = 0, int LocalCount = 1) +int validateCommonTestData(int start, int length, size_t step, int missing_end_data, + bool varying = false, int writerRank = 0, int LocalCount = 1) { int failures = 0; if (in_scalar_R64 != 1.5 * (step + 1)) { - std::cout << "Expected " << 1.5 * (step + 1) << ", got " - << in_scalar_R64 << " for in_scalar_R64, timestep " << step - << std::endl; + std::cout << "Expected " << 1.5 * (step + 1) << ", got " << in_scalar_R64 + << " for in_scalar_R64, timestep " << step << std::endl; failures++; } for (int i = 0; i < length; i++) @@ -197,39 +191,32 @@ int validateCommonTestData(int start, int length, size_t step, { if (in_I8[i] != (int8_t)((i + start) * 10 + step)) { - std::cout << "Expected 0x" << std::hex - << (int16_t)((i + start) * 10 + step) << ", got 0x" - << std::hex << (int16_t)in_I8[i] << std::dec - << " for in_I8[" << i << "](global[" << i + start - << "]), timestep " << step << std::endl; + std::cout << "Expected 0x" << std::hex << (int16_t)((i + start) * 10 + step) + << ", got 0x" << std::hex << (int16_t)in_I8[i] << std::dec + << " for in_I8[" << i << "](global[" << i + start << "]), timestep " + << step << std::endl; failures++; } } if (in_I16[i] != (int16_t)((i + start) * 10 + step)) { - std::cout << "Expected 0x" << std::hex - << (int16_t)((i + start) * 10 + step) << ", got 0x" - << std::hex << in_I16[i] << " for in_I16[" << i - << "](global[" << i + start << "]), timestep " << step - << std::endl; + std::cout << "Expected 0x" << std::hex << (int16_t)((i + start) * 10 + step) + << ", got 0x" << std::hex << in_I16[i] << " for in_I16[" << i << "](global[" + << i + start << "]), timestep " << step << std::endl; failures++; } if (in_I32[i] != (int32_t)((i + start) * 10 + step)) { - std::cout << "Expected 0x" << std::hex - << (int32_t)((i + start) * 10 + step) << ", got 0x" - << std::hex << in_I32[i] << " for in_I32[" << i - << "](global[" << i + start << "]), timestep " << step - << std::endl; + std::cout << "Expected 0x" << std::hex << (int32_t)((i + start) * 10 + step) + << ", got 0x" << std::hex << in_I32[i] << " for in_I32[" << i << "](global[" + << i + start << "]), timestep " << step << std::endl; failures++; } if (in_I64[i] != (int64_t)((i + start) * 10 + step)) { - std::cout << "Expected 0x" << std::hex - << (int64_t)((i + start) * 10 + step) << ", got 0x" - << std::hex << in_I64[i] << " for in_I64[" << i - << "](global[" << i + start << "]), timestep " << step - << std::endl; + std::cout << "Expected 0x" << std::hex << (int64_t)((i + start) * 10 + step) + << ", got 0x" << std::hex << in_I64[i] << " for in_I64[" << i << "](global[" + << i + start << "]), timestep " << step << std::endl; failures++; } @@ -237,10 +224,9 @@ int validateCommonTestData(int start, int length, size_t step, { if (in_R32[i] != (float)((i + start) * 10 + step)) { - std::cout << "Expected " << (float)((i + start) * 10 + step) - << ", got " << in_R32[i] << " for in_R32[" << i - << "](global[" << i + start << "]), timestep " << step - << std::endl; + std::cout << "Expected " << (float)((i + start) * 10 + step) << ", got " + << in_R32[i] << " for in_R32[" << i << "](global[" << i + start + << "]), timestep " << step << std::endl; failures++; } } @@ -255,9 +241,8 @@ int validateCommonTestData(int start, int length, size_t step, (((int)(j / LocalCount)) * 100.0)); if (in_R32_blocks[j][i] != expected) { - std::cout << "Expected " << expected << ", got " - << in_R32_blocks[j][i] << " for in_R32[" << i - << "][" << j << "(global[" << i + start + std::cout << "Expected " << expected << ", got " << in_R32_blocks[j][i] + << " for in_R32[" << i << "][" << j << "(global[" << i + start << "]), timestep " << step << std::endl; failures++; } @@ -266,9 +251,8 @@ int validateCommonTestData(int start, int length, size_t step, if (in_R64[i] != (double)((i + start) * 10 + step)) { - std::cout << "Expected " << (double)((i + start) * 10 + step) - << ", got " << in_R64[i] << " for in_R64[" << i - << "](global[" << i + start << "]), timestep " << step + std::cout << "Expected " << (double)((i + start) * 10 + step) << ", got " << in_R64[i] + << " for in_R64[" << i << "](global[" << i + start << "]), timestep " << step << std::endl; failures++; } @@ -277,57 +261,47 @@ int validateCommonTestData(int start, int length, size_t step, if ((in_C32[i].imag() != (float)((i + start) * 10 + step)) || (in_C32[i].real() != -(float)((i + start) * 10 + step))) { - std::cout << "Expected [" << (float)((i + start) * 10 + step) - << ", " << -(float)((i + start) * 10 + step) - << "], got " << in_C32[i] << " for in_C32[" << i - << "](global[" << i + start << "]), timestep " << step - << std::endl; + std::cout << "Expected [" << (float)((i + start) * 10 + step) << ", " + << -(float)((i + start) * 10 + step) << "], got " << in_C32[i] + << " for in_C32[" << i << "](global[" << i + start << "]), timestep " + << step << std::endl; failures++; } if ((in_C64[i].imag() != (double)((i + start) * 10 + step)) || (in_C64[i].real() != (-(double)((i + start) * 10 + step)))) { - std::cout << "Expected [" << (double)((i + start) * 10 + step) - << ", " << -(double)((i + start) * 10 + step) - << "], got " << in_C64[i] << " for in_C64[" << i - << "](global[" << i + start << "]), timestep " << step - << std::endl; + std::cout << "Expected [" << (double)((i + start) * 10 + step) << ", " + << -(double)((i + start) * 10 + step) << "], got " << in_C64[i] + << " for in_C64[" << i << "](global[" << i + start << "]), timestep " + << step << std::endl; failures++; } if (in_R64_2d[2 * i] != (double)((i + start) * 10 + step)) { - std::cout << "Expected " << (double)((i + start) * 10 + step) - << ", got " << in_R64_2d[i] << " for in_R64_2d[" << i - << "][0](global[" << i + start << "][0]), timestep " - << step << std::endl; + std::cout << "Expected " << (double)((i + start) * 10 + step) << ", got " + << in_R64_2d[i] << " for in_R64_2d[" << i << "][0](global[" << i + start + << "][0]), timestep " << step << std::endl; failures++; } - if (in_R64_2d[2 * i + 1] != - (double)(10000 + (i + start) * 10 + step)) + if (in_R64_2d[2 * i + 1] != (double)(10000 + (i + start) * 10 + step)) { - std::cout << "Expected " - << (double)(10000 + (i + start) * 10 + step) - << ", got " << in_R64_2d[i] << " for in_R64_2d[" << i - << "][1](global[" << i + start << "][1]), timestep " - << step << std::endl; + std::cout << "Expected " << (double)(10000 + (i + start) * 10 + step) << ", got " + << in_R64_2d[i] << " for in_R64_2d[" << i << "][1](global[" << i + start + << "][1]), timestep " << step << std::endl; failures++; } if (in_R64_2d_rev[i] != (double)((i + start) * 10 + step)) { - std::cout << "Expected " << (double)((i + start) * 10 + step) - << ", got " << in_R64_2d_rev[i] - << " for in_R64_2d_rev[0][" << i << "](global[0][" + std::cout << "Expected " << (double)((i + start) * 10 + step) << ", got " + << in_R64_2d_rev[i] << " for in_R64_2d_rev[0][" << i << "](global[0][" << i + start << "]), timestep " << step << std::endl; failures++; } - if (in_R64_2d_rev[i + length] != - (double)(10000 + (i + start) * 10 + step)) + if (in_R64_2d_rev[i + length] != (double)(10000 + (i + start) * 10 + step)) { - std::cout << "Expected " - << (double)(10000 + (i + start) * 10 + step) - << ", got " << in_R64_2d_rev[i + length] - << " for in_R64_2d_rev[1][" << i << "](global[1][" - << i + start << "]), timestep " << step << std::endl; + std::cout << "Expected " << (double)(10000 + (i + start) * 10 + step) << ", got " + << in_R64_2d_rev[i + length] << " for in_R64_2d_rev[1][" << i + << "](global[1][" << i + start << "]), timestep " << step << std::endl; failures++; } } @@ -335,18 +309,16 @@ int validateCommonTestData(int start, int length, size_t step, return failures; } -int validateCommonTestDataR64(int start, int length, size_t step, - int missing_end_data, bool varying = false, - int writerRank = 0) +int validateCommonTestDataR64(int start, int length, size_t step, int missing_end_data, + bool varying = false, int writerRank = 0) { int failures = 0; for (int i = 0; i < length; i++) { if (in_R64[i] != (double)((i + start) * 10 + step)) { - std::cout << "Expected " << (double)((i + start) * 10 + step) - << ", got " << in_R64[i] << " for in_R64[" << i - << "](global[" << i + start << "]), timestep " << step + std::cout << "Expected " << (double)((i + start) * 10 + step) << ", got " << in_R64[i] + << " for in_R64[" << i << "](global[" << i + start << "]), timestep " << step << std::endl; failures++; } diff --git a/testing/adios2/engine/staging-common/TestData2.h b/testing/adios2/engine/staging-common/TestData2.h index 1eb77250b4..0f89aae178 100644 --- a/testing/adios2/engine/staging-common/TestData2.h +++ b/testing/adios2/engine/staging-common/TestData2.h @@ -9,14 +9,12 @@ int printed_lines = 0; int to_print_lines = 0; template -void PrintData(const T *data, const size_t step, const Dims &start, - const Dims &count, const int rank) +void PrintData(const T *data, const size_t step, const Dims &start, const Dims &count, + const int rank) { - size_t size = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); - std::cout << "Rank: " << rank << " Step: " << step << " Size:" << size - << "\n"; + size_t size = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); + std::cout << "Rank: " << rank << " Step: " << step << " Size:" << size << "\n"; size_t printsize = 128; if (size < printsize) @@ -60,23 +58,20 @@ void GenDataRecursive(std::vector start, std::vector count, for (size_t j = 0; j < count_next[0]; j++) { vec[i0 * count_next[0] + j] = { - static_cast(z * shape_next[0] + (j + start_next[0]) + - step), - 1}; + static_cast(z * shape_next[0] + (j + start_next[0]) + step), 1}; } } else { - GenDataRecursive(start_next, count_next, shape_next, i0, z, vec, - step); + GenDataRecursive(start_next, count_next, shape_next, i0, z, vec, step); } } } template void GenDataRecursive(std::vector start, std::vector count, - std::vector shape, size_t n0, size_t y, - std::vector &vec, const size_t step) + std::vector shape, size_t n0, size_t y, std::vector &vec, + const size_t step) { for (size_t i = 0; i < count[0]; i++) { @@ -94,37 +89,33 @@ void GenDataRecursive(std::vector start, std::vector count, { for (size_t j = 0; j < count_next[0]; j++) { - vec[i0 * count_next[0] + j] = static_cast( - z * shape_next[0] + (j + start_next[0]) + step); + vec[i0 * count_next[0] + j] = + static_cast(z * shape_next[0] + (j + start_next[0]) + step); } } else { - GenDataRecursive(start_next, count_next, shape_next, i0, z, vec, - step); + GenDataRecursive(start_next, count_next, shape_next, i0, z, vec, step); } } } template -void GenData(std::vector &vec, const size_t step, - const std::vector &start, const std::vector &count, - const std::vector &shape) +void GenData(std::vector &vec, const size_t step, const std::vector &start, + const std::vector &count, const std::vector &shape) { - size_t total_size = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t total_size = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); vec.resize(total_size); GenDataRecursive(start, count, shape, 0, 0, vec, step); } template -void VerifyData(const std::complex *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape) +void VerifyData(const std::complex *data, size_t step, const Dims &start, const Dims &count, + const Dims &shape) { - size_t size = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector> tmpdata(size); GenData(tmpdata, step, start, count, shape); for (size_t i = 0; i < size; ++i) @@ -139,12 +130,11 @@ void VerifyData(const std::complex *data, size_t step, const Dims &start, } template -void VerifyData(const T *data, size_t step, const Dims &start, - const Dims &count, const Dims &shape, const int rank) +void VerifyData(const T *data, size_t step, const Dims &start, const Dims &count, const Dims &shape, + const int rank) { - size_t size = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t size = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); bool compressed = false; std::vector tmpdata(size); if (printed_lines < to_print_lines) diff --git a/testing/adios2/engine/staging-common/TestDefSyncWrite.cpp b/testing/adios2/engine/staging-common/TestDefSyncWrite.cpp index bf10d9ad9b..43b9f4341c 100644 --- a/testing/adios2/engine/staging-common/TestDefSyncWrite.cpp +++ b/testing/adios2/engine/staging-common/TestDefSyncWrite.cpp @@ -38,16 +38,11 @@ TEST(CommonWriteTest, ADIOS2CommonWrite) adios2::Dims small_count{static_cast(SmallSize)}; std::vector> vars(5); - vars[0] = - io.DefineVariable("big1", big_shape, big_start, big_count); - vars[1] = io.DefineVariable("small1", small_shape, small_start, - small_count); - vars[2] = - io.DefineVariable("big2", big_shape, big_start, big_count); - vars[3] = io.DefineVariable("small2", small_shape, small_start, - small_count); - vars[4] = - io.DefineVariable("big3", big_shape, big_start, big_count); + vars[0] = io.DefineVariable("big1", big_shape, big_start, big_count); + vars[1] = io.DefineVariable("small1", small_shape, small_start, small_count); + vars[2] = io.DefineVariable("big2", big_shape, big_start, big_count); + vars[3] = io.DefineVariable("small2", small_shape, small_start, small_count); + vars[4] = io.DefineVariable("big3", big_shape, big_start, big_count); std::vector> data(5); for (int i = 0; i < 5; i++) @@ -201,8 +196,7 @@ TEST(CommonWriteTest, ADIOS2CommonRead) for (std::size_t index = 0; index < data[j].size(); ++index) { EXPECT_EQ(data[j][index], j + 1.0) - << "Data isn't correct, for " << vars[j].Name() << "[" - << index << "]"; + << "Data isn't correct, for " << vars[j].Name() << "[" << index << "]"; } } } diff --git a/testing/adios2/engine/staging-common/TestDistributionRead.cpp b/testing/adios2/engine/staging-common/TestDistributionRead.cpp index 17d3f95423..7d788489a4 100644 --- a/testing/adios2/engine/staging-common/TestDistributionRead.cpp +++ b/testing/adios2/engine/staging-common/TestDistributionRead.cpp @@ -87,10 +87,8 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) /* take the first size as something that gives us writer size */ writerSize = var1.Shape()[0] / 10; - long unsigned int myStart = - (long unsigned int)(writerSize * Nx / mpiSize) * mpiRank; - long unsigned int myLength = - (long unsigned int)((writerSize * Nx + mpiSize - 1) / mpiSize); + long unsigned int myStart = (long unsigned int)(writerSize * Nx / mpiSize) * mpiRank; + long unsigned int myLength = (long unsigned int)((writerSize * Nx + mpiSize - 1) / mpiSize); if (myStart + myLength > writerSize * Nx) { @@ -109,16 +107,16 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) engine1.Get(step_var, &step); engine1.EndStep(); - int result = validateSimpleForwardData(in_R64_1, (int)step, myStart, - myLength, writerSize * Nx); + int result = + validateSimpleForwardData(in_R64_1, (int)step, myStart, myLength, writerSize * Nx); if (first_step == SIZE_MAX) { first_step = step; } if (result != 0) { - std::cout << "Read Data Validation failed on node " << mpiRank - << " timestep " << step << std::endl; + std::cout << "Read Data Validation failed on node " << mpiRank << " timestep " << step + << std::endl; } EXPECT_EQ(result, 0); total_steps++; diff --git a/testing/adios2/engine/staging-common/TestDistributionWrite.cpp b/testing/adios2/engine/staging-common/TestDistributionWrite.cpp index d69e304eb2..5b3c607141 100644 --- a/testing/adios2/engine/staging-common/TestDistributionWrite.cpp +++ b/testing/adios2/engine/staging-common/TestDistributionWrite.cpp @@ -95,8 +95,7 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) // Generate test data for each process uniquely std::vector data_forward; - generateSimpleForwardData(data_forward, (int)step, myStart1, myCount1, - (int)Nx * mpiSize); + generateSimpleForwardData(data_forward, (int)step, myStart1, myCount1, (int)Nx * mpiSize); engine1.BeginStep(); auto var1 = io1.InquireVariable(varname1); diff --git a/testing/adios2/engine/staging-common/TestLocalRead.cpp b/testing/adios2/engine/staging-common/TestLocalRead.cpp index 83208dfb4f..3d7ce43040 100644 --- a/testing/adios2/engine/staging-common/TestLocalRead.cpp +++ b/testing/adios2/engine/staging-common/TestLocalRead.cpp @@ -23,8 +23,8 @@ #include "ParseArgs.h" -static void ReadVariable(const std::string &name, adios2::IO &io, - adios2::Engine &reader, size_t step) +static void ReadVariable(const std::string &name, adios2::IO &io, adios2::Engine &reader, + size_t step) { adios2::Variable variable = io.InquireVariable(name); @@ -32,8 +32,8 @@ static void ReadVariable(const std::string &name, adios2::IO &io, { auto blocksInfo = reader.BlocksInfo(variable, step); - std::cout << " " << name << " has " << blocksInfo.size() - << " blocks in step " << step << std::endl; + std::cout << " " << name << " has " << blocksInfo.size() << " blocks in step " << step + << std::endl; // create a data vector for each block std::vector dataSet; @@ -50,8 +50,7 @@ static void ReadVariable(const std::string &name, adios2::IO &io, } else { - std::cout << " Variable " << name << " not found in step " << step - << std::endl; + std::cout << " Variable " << name << " not found in step " << step << std::endl; } } @@ -87,8 +86,7 @@ TEST_F(LocalReadTest, ADIOS2LocalRead) { // Begin step - adios2::StepStatus read_status = - reader.BeginStep(adios2::StepMode::Read, 10.0f); + adios2::StepStatus read_status = reader.BeginStep(adios2::StepMode::Read, 10.0f); if (read_status == adios2::StepStatus::NotReady) { // std::cout << "Stream not ready yet. Waiting...\n"; @@ -123,9 +121,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); int key; diff --git a/testing/adios2/engine/staging-common/TestLocalWrite.cpp b/testing/adios2/engine/staging-common/TestLocalWrite.cpp index 64b2b1385a..e11b3e30aa 100644 --- a/testing/adios2/engine/staging-common/TestLocalWrite.cpp +++ b/testing/adios2/engine/staging-common/TestLocalWrite.cpp @@ -14,8 +14,7 @@ #include "ParseArgs.h" -void ReadVariable(const std::string &name, adios2::IO &io, - adios2::Engine &reader, size_t step) +void ReadVariable(const std::string &name, adios2::IO &io, adios2::Engine &reader, size_t step) { adios2::Variable variable = io.InquireVariable(name); @@ -23,8 +22,8 @@ void ReadVariable(const std::string &name, adios2::IO &io, { auto blocksInfo = reader.BlocksInfo(variable, step); - std::cout << " " << name << " has " << blocksInfo.size() - << " blocks in step " << step << std::endl; + std::cout << " " << name << " has " << blocksInfo.size() << " blocks in step " << step + << std::endl; // create a data vector for each block std::vector dataSet; @@ -41,8 +40,7 @@ void ReadVariable(const std::string &name, adios2::IO &io, } else { - std::cout << " Variable " << name << " not found in step " << step - << std::endl; + std::cout << " Variable " << name << " not found in step " << step << std::endl; } } @@ -81,8 +79,7 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) io.SetEngine(engine); io.SetParameters(engineParams); - adios2::Variable varV0 = - io.DefineVariable("v0", {}, {}, {Nglobal}); + adios2::Variable varV0 = io.DefineVariable("v0", {}, {}, {Nglobal}); adios2::Engine writer = io.Open(fname, adios2::Mode::Write); @@ -118,9 +115,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); int key; diff --git a/testing/adios2/engine/staging-common/TestOnDemandMPI.cpp b/testing/adios2/engine/staging-common/TestOnDemandMPI.cpp index 272454c4de..83c8c6efc3 100644 --- a/testing/adios2/engine/staging-common/TestOnDemandMPI.cpp +++ b/testing/adios2/engine/staging-common/TestOnDemandMPI.cpp @@ -53,8 +53,7 @@ void DoWriter(adios2::IO io) // Generate test data for each process uniquely std::vector data_forward; - generateSimpleForwardData(data_forward, (int)step, myStart, myCount, - (int)Nx); + generateSimpleForwardData(data_forward, (int)step, myStart, myCount, (int)Nx); engine.BeginStep(); @@ -107,8 +106,7 @@ void DoReader(adios2::IO io, int Rank) steps += 1; } sstReader.Close(); - std::cout << "Reader " << Rank << " got " << steps << " steps " - << std::endl; + std::cout << "Reader " << Rank << " got " << steps << " steps " << std::endl; MPI_Reduce(&steps, &get_count, 1, MPI_INT, MPI_SUM, 0, MPI_COMM_WORLD); } diff --git a/testing/adios2/engine/staging-common/TestOnDemandRead.cpp b/testing/adios2/engine/staging-common/TestOnDemandRead.cpp index 0fc3246727..8984544db4 100644 --- a/testing/adios2/engine/staging-common/TestOnDemandRead.cpp +++ b/testing/adios2/engine/staging-common/TestOnDemandRead.cpp @@ -64,8 +64,7 @@ TEST_F(SstOnDemandReadTest, ADIOS2SstOnDemandRead) { std::string namev("sstFloats"); namev += std::to_string(v); - adios2::Variable sstFloats = - sstIO.InquireVariable(namev); + adios2::Variable sstFloats = sstIO.InquireVariable(namev); sstFloats.SetSelection(sel); auto start_get = std::chrono::steady_clock::now(); @@ -81,23 +80,20 @@ TEST_F(SstOnDemandReadTest, ADIOS2SstOnDemandRead) size_t currentStep = sstReader.CurrentStep(); for (unsigned int v = 0; v < variablesSize; ++v) { - std::cout << name << ": Get step " << currentStep << " variable" - << v << " " << myFloats[v * Nx] << std::endl; + std::cout << name << ": Get step " << currentStep << " variable" << v << " " + << myFloats[v * Nx] << std::endl; } #endif } auto end_step = std::chrono::steady_clock::now(); - double total_time = - ((double)(end_step - start_step).count()) / (size * 1000.0); + double total_time = ((double)(end_step - start_step).count()) / (size * 1000.0); get_time /= size; double global_get_sum = 0; double global_sum = 0; #if ADIOS2_USE_MPI - MPI_Reduce(&get_time, &global_get_sum, 1, MPI_DOUBLE, MPI_SUM, 0, - testComm); - MPI_Reduce(&total_time, &global_sum, 1, MPI_DOUBLE, MPI_SUM, 0, - testComm); + MPI_Reduce(&get_time, &global_get_sum, 1, MPI_DOUBLE, MPI_SUM, 0, testComm); + MPI_Reduce(&total_time, &global_sum, 1, MPI_DOUBLE, MPI_SUM, 0, testComm); #else global_sum = total_time; global_get_sum = get_time; @@ -106,17 +102,15 @@ TEST_F(SstOnDemandReadTest, ADIOS2SstOnDemandRead) // Time in microseconds if (rank == 0) { - std::cout << "SST,Read," << size << "," << Nx << "," - << variablesSize << "," << steps << "," << global_get_sum - << "," << global_sum << std::endl; + std::cout << "SST,Read," << size << "," << Nx << "," << variablesSize << "," << steps + << "," << global_get_sum << "," << global_sum << std::endl; } EXPECT_EQ(NSteps, steps); sstReader.Close(); } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) @@ -145,9 +139,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestOnDemandWrite.cpp b/testing/adios2/engine/staging-common/TestOnDemandWrite.cpp index c053c03cd5..da1a3ce67f 100644 --- a/testing/adios2/engine/staging-common/TestOnDemandWrite.cpp +++ b/testing/adios2/engine/staging-common/TestOnDemandWrite.cpp @@ -65,8 +65,7 @@ TEST_F(SstOnDemandWriteTest, ADIOS2SstOnDemandWrite) { std::string namev("sstFloats"); namev += std::to_string(v); - sstFloats[v] = sstIO.DefineVariable(namev, {size * Nx}, - {rank * Nx}, {Nx}); + sstFloats[v] = sstIO.DefineVariable(namev, {size * Nx}, {rank * Nx}, {Nx}); } auto stepVar = sstIO.DefineVariable("Step"); @@ -85,47 +84,40 @@ TEST_F(SstOnDemandWriteTest, ADIOS2SstOnDemandWrite) put_time += (end_put - start_put).count() / 1000; // std::this_thread::sleep_for (std::chrono::seconds(10)); #ifdef DEBUG - std::cout << fname << ": Put step " << timeStep << " variable" - << v << " " << myFloats[v * Nx] << std::endl; + std::cout << fname << ": Put step " << timeStep << " variable" << v << " " + << myFloats[v * Nx] << std::endl; #endif } sstWriter.Put(stepVar, timeStep); sstWriter.EndStep(); } auto end_step = std::chrono::steady_clock::now(); - double total_time = - ((double)(end_step - start_step).count()) / (size * 1000.0); + double total_time = ((double)(end_step - start_step).count()) / (size * 1000.0); double global_put_sum; double global_sum; #if ADIOS2_USE_MPI - MPI_Reduce(&put_time, &global_put_sum, 1, MPI_DOUBLE, MPI_SUM, 0, - testComm); - MPI_Reduce(&total_time, &global_sum, 1, MPI_DOUBLE, MPI_SUM, 0, - testComm); + MPI_Reduce(&put_time, &global_put_sum, 1, MPI_DOUBLE, MPI_SUM, 0, testComm); + MPI_Reduce(&total_time, &global_sum, 1, MPI_DOUBLE, MPI_SUM, 0, testComm); #else global_sum = total_time; global_put_sum = put_time; #endif // Time in microseconds if (rank == 0) - std::cout << "SST,Write," << size << "," << Nx << "," - << variablesSize << "," << NSteps << "," - << global_put_sum / size << "," << global_sum / size - << std::endl; + std::cout << "SST,Write," << size << "," << Nx << "," << variablesSize << "," << NSteps + << "," << global_put_sum / size << "," << global_sum / size << std::endl; sstWriter.Close(); } catch (std::invalid_argument &e) { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) { - std::cout - << "IO System base failure exception, STOPPING PROGRAM from rank " - << rank << "\n"; + std::cout << "IO System base failure exception, STOPPING PROGRAM from rank " << rank + << "\n"; std::cout << e.what() << "\n"; } catch (std::exception &e) @@ -146,9 +138,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestReadJoined.cpp b/testing/adios2/engine/staging-common/TestReadJoined.cpp index 94a8fc45a0..177885f332 100644 --- a/testing/adios2/engine/staging-common/TestReadJoined.cpp +++ b/testing/adios2/engine/staging-common/TestReadJoined.cpp @@ -84,8 +84,8 @@ TEST_F(CommonReadTest, ADIOS2CommonRead1D8) if (!mpiRank) { - std::cout << "Step " << step << " table shape (" << var.Shape()[0] - << ", " << var.Shape()[1] << ")" << std::endl; + std::cout << "Step " << step << " table shape (" << var.Shape()[0] << ", " + << var.Shape()[1] << ")" << std::endl; } int Nrows; @@ -131,9 +131,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestShapeChangingWrite.cpp b/testing/adios2/engine/staging-common/TestShapeChangingWrite.cpp index 5bb497d99d..16eea20b5a 100644 --- a/testing/adios2/engine/staging-common/TestShapeChangingWrite.cpp +++ b/testing/adios2/engine/staging-common/TestShapeChangingWrite.cpp @@ -62,8 +62,7 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) r64_Nx = 2 * Nx; } } - std::cout << "Nx is set to " << r64_Nx << " on Rank " << mpiRank - << std::endl; + std::cout << "Nx is set to " << r64_Nx << " on Rank " << mpiRank << std::endl; // Declare 1D variables (NumOfProcesses * Nx) // The local process' part (start, count) can be defined now or later @@ -102,22 +101,15 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) first_count); // changing (void)io.DefineVariable("i64", shape, start, count); auto var_r32 = io.DefineVariable("r32", shape, start, count); - auto var_r64 = - io.DefineVariable("r64", shape, start_r64, count_r64); - (void)io.DefineVariable>("c32", shape, start, - count); - (void)io.DefineVariable>("c64", shape, start, - count); - auto var_r64_2d = - io.DefineVariable("r64_2d", shape2, start2, count2); - auto var_r64_2d_rev = - io.DefineVariable("r64_2d_rev", shape3, start3, count3); - (void)io.DefineVariable("time", time_shape, time_start, - time_count); + auto var_r64 = io.DefineVariable("r64", shape, start_r64, count_r64); + (void)io.DefineVariable>("c32", shape, start, count); + (void)io.DefineVariable>("c64", shape, start, count); + auto var_r64_2d = io.DefineVariable("r64_2d", shape2, start2, count2); + auto var_r64_2d_rev = io.DefineVariable("r64_2d_rev", shape3, start3, count3); + (void)io.DefineVariable("time", time_shape, time_start, time_count); if (CompressZfp) { - adios2::Operator ZfpOp = - adios.DefineOperator("zfpCompressor", "zfp"); + adios2::Operator ZfpOp = adios.DefineOperator("zfpCompressor", "zfp"); var_r32.AddOperation(ZfpOp, {{"rate", "20"}}); var_r64.AddOperation(ZfpOp, {{"rate", "20"}}); var_r64_2d.AddOperation(ZfpOp, {{"rate", "20"}}); @@ -134,8 +126,7 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) for (int step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - generateCommonTestData((int)step, mpiRank, mpiSize, (int)Nx, - (int)r64_Nx); + generateCommonTestData((int)step, mpiRank, mpiSize, (int)Nx, (int)r64_Nx); engine.BeginStep(); // Retrieve the variables that previously went out of scope @@ -159,17 +150,15 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) // Make a 1D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces adios2::Box sel({mpiRank * Nx}, {Nx}); - adios2::Box sel_i32( - {mpiRank * Nx}, {static_cast(3 * mpiSize)}); - adios2::Box sel_i32_2( - {mpiRank * Nx + 3}, {static_cast(4 * mpiSize)}); - adios2::Box sel_i32_3( - {mpiRank * Nx + 7}, {static_cast(3 * mpiSize)}); + adios2::Box sel_i32({mpiRank * Nx}, {static_cast(3 * mpiSize)}); + adios2::Box sel_i32_2({mpiRank * Nx + 3}, + {static_cast(4 * mpiSize)}); + adios2::Box sel_i32_3({mpiRank * Nx + 7}, + {static_cast(3 * mpiSize)}); adios2::Box sel_r64({mpiRank * Nx}, {r64_Nx}); adios2::Box sel2({mpiRank * Nx, 0}, {Nx, 2}); adios2::Box sel3({0, mpiRank * Nx}, {2, Nx}); - adios2::Box sel_time( - {static_cast(mpiRank)}, {1}); + adios2::Box sel_time({static_cast(mpiRank)}, {1}); if (ZeroDataVar) { if (mpiRank == 1) @@ -248,8 +237,7 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) } if (AdvancingAttrs) { - const std::string r64_Single = - std::string("r64_PerStep_") + std::to_string(step); + const std::string r64_Single = std::string("r64_PerStep_") + std::to_string(step); io.DefineAttribute(r64_Single, (double)(step * 10.0)); std::cout << "Defining attribute " << r64_Single << std::endl; } @@ -259,8 +247,8 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) // restore original shape only after EndStep() var_i32.SetShape(first_shape); - std::this_thread::sleep_for(std::chrono::milliseconds( - DelayMS)); /* sleep for DelayMS milliseconds */ + std::this_thread::sleep_for( + std::chrono::milliseconds(DelayMS)); /* sleep for DelayMS milliseconds */ } // Close the file @@ -281,9 +269,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestStagingMPMD.cpp b/testing/adios2/engine/staging-common/TestStagingMPMD.cpp index 59c9345f02..93661d4440 100644 --- a/testing/adios2/engine/staging-common/TestStagingMPMD.cpp +++ b/testing/adios2/engine/staging-common/TestStagingMPMD.cpp @@ -73,8 +73,7 @@ class TestStagingMPMD : public ::testing::TestWithParam TestStagingMPMD() = default; const std::string streamName = "TestStream"; - void MainWriters(MPI_Comm comm, size_t npx, size_t npy, int steps, - unsigned int sleeptime) + void MainWriters(MPI_Comm comm, size_t npx, size_t npy, int steps, unsigned int sleeptime) { int rank, nproc; MPI_Comm_rank(comm, &rank); @@ -99,12 +98,10 @@ class TestStagingMPMD : public ::testing::TestWithParam io.SetEngine(engineName); io.SetParameters(engineParams); - adios2::Variable varArray = - io.DefineVariable("myArray", {gndx, gndy}, {offsx, offsy}, - {ndx, ndy}, adios2::ConstantDims); + adios2::Variable varArray = io.DefineVariable( + "myArray", {gndx, gndy}, {offsx, offsy}, {ndx, ndy}, adios2::ConstantDims); - adios2::Variable varScalar = - io.DefineVariable("myScalar"); + adios2::Variable varScalar = io.DefineVariable("myScalar"); adios2::Engine writer = io.Open(streamName, adios2::Mode::Write, comm); @@ -148,9 +145,8 @@ class TestStagingMPMD : public ::testing::TestWithParam return 1000.0f * step + offsy + offsx / 1000.0f; } - void CheckData(const std::vector &array, size_t gndx, size_t gndy, - size_t offsx, size_t offsy, size_t ndx, size_t ndy, - size_t step, int rank) + void CheckData(const std::vector &array, size_t gndx, size_t gndy, size_t offsx, + size_t offsy, size_t ndx, size_t ndy, size_t step, int rank) { size_t idx = 0; for (size_t x = 0; x < ndx; ++x) @@ -160,17 +156,16 @@ class TestStagingMPMD : public ::testing::TestWithParam float expectedValue = GetValue(offsx + x, offsy + y, step); EXPECT_EQ(array[idx], expectedValue) << "Error in read, did not receive the expected value:" - << " rank " << rank << ", step " << step << ", gdim {" - << gndx << ',' << gndy << '}' << ", offs {" << offsx << ',' - << offsy << '}' << ", ldim {" << ndx << ',' << ndy << '}' - << ", lpos {" << x << ',' << y << '}'; + << " rank " << rank << ", step " << step << ", gdim {" << gndx << ',' << gndy + << '}' << ", offs {" << offsx << ',' << offsy << '}' << ", ldim {" << ndx << ',' + << ndy << '}' << ", lpos {" << x << ',' << y << '}'; ++idx; } } } - void MainReaders(MPI_Comm comm, size_t npx, size_t npy, - unsigned int sleeptime, float reader_timeout) + void MainReaders(MPI_Comm comm, size_t npx, size_t npy, unsigned int sleeptime, + float reader_timeout) { int rank, nproc; MPI_Comm_rank(comm, &rank); @@ -196,8 +191,7 @@ class TestStagingMPMD : public ::testing::TestWithParam while (true) { - adios2::StepStatus status = - reader.BeginStep(adios2::StepMode::Read, reader_timeout); + adios2::StepStatus status = reader.BeginStep(adios2::StepMode::Read, reader_timeout); if (status != adios2::StepStatus::OK) { break; @@ -258,8 +252,8 @@ class TestStagingMPMD : public ::testing::TestWithParam void TestCommon(RunParams p, int steps, unsigned int writer_sleeptime, unsigned int reader_sleeptime, float reader_timeout) { - std::cout << "test " << p.npx_w << "x" << p.npy_w << " writers " - << p.npx_r << "x" << p.npy_r << " readers " << std::endl; + std::cout << "test " << p.npx_w << "x" << p.npy_w << " writers " << p.npx_r << "x" + << p.npy_r << " readers " << std::endl; size_t nwriters = p.npx_w * p.npy_w; size_t nreaders = p.npx_r * p.npy_r; @@ -267,9 +261,7 @@ class TestStagingMPMD : public ::testing::TestWithParam { if (!wrank) { - std::cout - << "skip test: writers+readers > available processors " - << std::endl; + std::cout << "skip test: writers+readers > available processors " << std::endl; } return; } @@ -295,19 +287,18 @@ class TestStagingMPMD : public ::testing::TestWithParam if (color == 0) { - std::cout << "Process wrank " << wrank << " rank " << rank - << " calls MainWriters " << std::endl; + std::cout << "Process wrank " << wrank << " rank " << rank << " calls MainWriters " + << std::endl; MainWriters(comm, p.npx_w, p.npy_w, steps, writer_sleeptime); } else if (color == 1) { - std::cout << "Process wrank " << wrank << " rank " << rank - << " calls MainReaders " << std::endl; - MainReaders(comm, p.npx_r, p.npy_r, reader_sleeptime, - reader_timeout); + std::cout << "Process wrank " << wrank << " rank " << rank << " calls MainReaders " + << std::endl; + MainReaders(comm, p.npx_r, p.npy_r, reader_sleeptime, reader_timeout); } - std::cout << "Process wrank " << wrank << " rank " << rank - << " enters MPI barrier..." << std::endl; + std::cout << "Process wrank " << wrank << " rank " << rank << " enters MPI barrier..." + << std::endl; MPI_Barrier(MPI_COMM_WORLD); // Separate each individual test with a big gap in time @@ -346,8 +337,7 @@ TEST_P(TestStagingMPMD, SlowReader) TestCommon(p, 4, 0, 100, -1.0); } -INSTANTIATE_TEST_SUITE_P(NxM, TestStagingMPMD, - ::testing::ValuesIn(CreateRunParams())); +INSTANTIATE_TEST_SUITE_P(NxM, TestStagingMPMD, ::testing::ValuesIn(CreateRunParams())); void threadTimeoutRun(size_t t) { @@ -387,8 +377,8 @@ int main(int argc, char **argv) if (!wrank) { - std::cout << "Test " << engineName << " engine with " << numprocs - << " processes " << std::endl; + std::cout << "Test " << engineName << " engine with " << numprocs << " processes " + << std::endl; } int result; diff --git a/testing/adios2/engine/staging-common/TestStructRead.cpp b/testing/adios2/engine/staging-common/TestStructRead.cpp index f603a1b807..02365b46f8 100644 --- a/testing/adios2/engine/staging-common/TestStructRead.cpp +++ b/testing/adios2/engine/staging-common/TestStructRead.cpp @@ -55,9 +55,8 @@ TEST_F(StructReadTest, ADIOS2StructRead) adios2::Dims start = {2, (size_t)mpiRank * 2}; adios2::Dims count = {5, 2}; - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); std::vector myShorts(datasize); @@ -83,8 +82,7 @@ TEST_F(StructReadTest, ADIOS2StructRead) if (status == adios2::StepStatus::OK) { auto varIntScalar = io.InquireVariable("varIntScalar"); - auto blocksInfo = - engine.BlocksInfo(varIntScalar, engine.CurrentStep()); + auto blocksInfo = engine.BlocksInfo(varIntScalar, engine.CurrentStep()); for (const auto &bi : blocksInfo) { @@ -97,27 +95,21 @@ TEST_F(StructReadTest, ADIOS2StructRead) const auto &vars = io.AvailableVariables(); ASSERT_EQ(vars.size(), 12); size_t currentStep = engine.CurrentStep(); - adios2::Variable varChars = - io.InquireVariable("varChars"); + adios2::Variable varChars = io.InquireVariable("varChars"); adios2::Variable varUChars = io.InquireVariable("varUChars"); - adios2::Variable varShorts = - io.InquireVariable("varShorts"); + adios2::Variable varShorts = io.InquireVariable("varShorts"); adios2::Variable varUShorts = io.InquireVariable("varUShorts"); adios2::Variable varInts = io.InquireVariable("varInts"); - adios2::Variable varUInts = - io.InquireVariable("varUInts"); - adios2::Variable varFloats = - io.InquireVariable("varFloats"); - adios2::Variable varDoubles = - io.InquireVariable("varDoubles"); + adios2::Variable varUInts = io.InquireVariable("varUInts"); + adios2::Variable varFloats = io.InquireVariable("varFloats"); + adios2::Variable varDoubles = io.InquireVariable("varDoubles"); adios2::Variable> varComplexes = io.InquireVariable>("varComplexes"); adios2::Variable> varDComplexes = io.InquireVariable>("varDComplexes"); - adios2::Variable varString = - io.InquireVariable("varString"); + adios2::Variable varString = io.InquireVariable("varString"); varChars.SetSelection({start, count}); varUChars.SetSelection({start, count}); @@ -137,35 +129,23 @@ TEST_F(StructReadTest, ADIOS2StructRead) engine.Get(varInts, myInts.data(), adios2::Mode::Sync); engine.Get(varUInts, myUInts.data(), adios2::Mode::Sync); - VerifyData(myChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUChars.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUShorts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myInts.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myUInts.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUChars.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUShorts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myInts.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myUInts.data(), currentStep, start, count, shape, mpiRank); engine.Get(varFloats, myFloats.data(), adios2::Mode::Deferred); engine.Get(varDoubles, myDoubles.data(), adios2::Mode::Deferred); - engine.Get(varComplexes, myComplexes.data(), - adios2::Mode::Deferred); - engine.Get(varDComplexes, myDComplexes.data(), - adios2::Mode::Deferred); + engine.Get(varComplexes, myComplexes.data(), adios2::Mode::Deferred); + engine.Get(varDComplexes, myDComplexes.data(), adios2::Mode::Deferred); engine.PerformGets(); - VerifyData(myFloats.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDoubles.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myComplexes.data(), currentStep, start, count, shape, - mpiRank); - VerifyData(myDComplexes.data(), currentStep, start, count, shape, - mpiRank); + VerifyData(myFloats.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDoubles.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myComplexes.data(), currentStep, start, count, shape, mpiRank); + VerifyData(myDComplexes.data(), currentStep, start, count, shape, mpiRank); std::string s; engine.Get(varString, s); engine.PerformGets(); @@ -181,33 +161,26 @@ TEST_F(StructReadTest, ADIOS2StructRead) if (varStruct && !ReadStruct) { // can't do a Get without setting the read structure - EXPECT_THROW(engine.Get(varStruct, myParticles.data(), - adios2::Mode::Sync), + EXPECT_THROW(engine.Get(varStruct, myParticles.data(), adios2::Mode::Sync), std::logic_error); - StructDefinition WriteStruct = - varStruct.GetWriteStructDef(); + StructDefinition WriteStruct = varStruct.GetWriteStructDef(); ASSERT_TRUE(WriteStruct); std::cout << std::endl - << "Writer side structure was named \"" - << WriteStruct.StructName() << "\" and has size " - << WriteStruct.StructSize() << std::endl; + << "Writer side structure was named \"" << WriteStruct.StructName() + << "\" and has size " << WriteStruct.StructSize() << std::endl; for (size_t i = 0; i < WriteStruct.Fields(); i++) { - std::cout << "\tField " << i << " - Name: \"" - << WriteStruct.Name(i) + std::cout << "\tField " << i << " - Name: \"" << WriteStruct.Name(i) << "\", Offset: " << WriteStruct.Offset(i) << ", Type: " << WriteStruct.Type(i) - << ", ElementCount : " - << WriteStruct.ElementCount(i) << std::endl; + << ", ElementCount : " << WriteStruct.ElementCount(i) + << std::endl; } std::cout << std::endl; - auto particleDef1 = - io.DefineStruct("particle", sizeof(particle)); - particleDef1.AddField("a", offsetof(particle, a), - adios2::DataType::Int8); - particleDef1.AddField("b", offsetof(particle, b), - adios2::DataType::Int32, 4); + auto particleDef1 = io.DefineStruct("particle", sizeof(particle)); + particleDef1.AddField("a", offsetof(particle, a), adios2::DataType::Int8); + particleDef1.AddField("b", offsetof(particle, b), adios2::DataType::Int32, 4); varStruct.SetReadStructDef(particleDef1); } else if (varStruct) @@ -219,17 +192,14 @@ TEST_F(StructReadTest, ADIOS2StructRead) first = false; StructDefinition SaveDef = varStruct.GetReadStructDef(); ASSERT_TRUE(SaveDef); - auto particleDef2 = - io.DefineStruct("particle", sizeof(particle)); - particleDef2.AddField("a", offsetof(particle, a), - adios2::DataType::Int8); - particleDef2.AddField("c", offsetof(particle, b), - adios2::DataType::Int32, 4); + auto particleDef2 = io.DefineStruct("particle", sizeof(particle)); + particleDef2.AddField("a", offsetof(particle, a), adios2::DataType::Int8); + particleDef2.AddField("c", offsetof(particle, b), adios2::DataType::Int32, + 4); varStruct.SetReadStructDef(particleDef2); // can't change the read structure - EXPECT_THROW(engine.Get(varStruct, myParticles.data(), - adios2::Mode::Sync), + EXPECT_THROW(engine.Get(varStruct, myParticles.data(), adios2::Mode::Sync), std::logic_error); // restore the old one so we can succeed below varStruct.SetReadStructDef(SaveDef); @@ -252,8 +222,7 @@ TEST_F(StructReadTest, ADIOS2StructRead) } else if (status == adios2::StepStatus::EndOfStream) { - std::cout << "[Rank " + std::to_string(mpiRank) + - "] SscTest reader end of stream!" + std::cout << "[Rank " + std::to_string(mpiRank) + "] SscTest reader end of stream!" << std::endl; break; } @@ -275,9 +244,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestStructWrite.cpp b/testing/adios2/engine/staging-common/TestStructWrite.cpp index 432795d21f..33ea4db81e 100644 --- a/testing/adios2/engine/staging-common/TestStructWrite.cpp +++ b/testing/adios2/engine/staging-common/TestStructWrite.cpp @@ -54,9 +54,8 @@ TEST_F(StructWriteTest, ADIOS2CommonWrite) adios2::Dims shape = {10, (size_t)mpiSize * 2}; adios2::Dims start = {2, (size_t)mpiRank * 2}; adios2::Dims count = {5, 2}; - size_t datasize = - std::accumulate(count.begin(), count.end(), static_cast(1), - std::multiplies()); + size_t datasize = std::accumulate(count.begin(), count.end(), static_cast(1), + std::multiplies()); std::vector myChars(datasize); std::vector myUChars(datasize); @@ -69,21 +68,16 @@ TEST_F(StructWriteTest, ADIOS2CommonWrite) std::vector> myComplexes(datasize); std::vector> myDComplexes(datasize); auto varChars = io.DefineVariable("varChars", shape, start, count); - auto varUChars = - io.DefineVariable("varUChars", shape, start, count); + auto varUChars = io.DefineVariable("varUChars", shape, start, count); auto varShorts = io.DefineVariable("varShorts", shape, start, count); - auto varUShorts = - io.DefineVariable("varUShorts", shape, start, count); + auto varUShorts = io.DefineVariable("varUShorts", shape, start, count); auto varInts = io.DefineVariable("varInts", shape, start, count); - auto varUInts = - io.DefineVariable("varUInts", shape, start, count); + auto varUInts = io.DefineVariable("varUInts", shape, start, count); auto varFloats = io.DefineVariable("varFloats", shape, start, count); - auto varDoubles = - io.DefineVariable("varDoubles", shape, start, count); - auto varComplexes = io.DefineVariable>( - "varComplexes", shape, start, count); - auto varDComplexes = io.DefineVariable>( - "varDComplexes", shape, start, count); + auto varDoubles = io.DefineVariable("varDoubles", shape, start, count); + auto varComplexes = io.DefineVariable>("varComplexes", shape, start, count); + auto varDComplexes = + io.DefineVariable>("varDComplexes", shape, start, count); auto varIntScalar = io.DefineVariable("varIntScalar"); auto varString = io.DefineVariable("varString"); @@ -93,14 +87,10 @@ TEST_F(StructWriteTest, ADIOS2CommonWrite) int b[4]; }; auto particleDef = io.DefineStruct("particle", sizeof(particle)); - particleDef.AddField("a", offsetof(struct particle, a), - adios2::DataType::Int8); - particleDef.AddField("b", offsetof(struct particle, b), - adios2::DataType::Int32, 4); - auto varStruct = - io.DefineStructVariable("particles", particleDef, shape, start, count); - EXPECT_THROW(particleDef.AddField("c", 4, adios2::DataType::Int32), - std::runtime_error); + particleDef.AddField("a", offsetof(struct particle, a), adios2::DataType::Int8); + particleDef.AddField("b", offsetof(struct particle, b), adios2::DataType::Int32, 4); + auto varStruct = io.DefineStructVariable("particles", particleDef, shape, start, count); + EXPECT_THROW(particleDef.AddField("c", 4, adios2::DataType::Int32), std::runtime_error); std::vector myParticles(datasize); for (size_t i = 0; i < datasize; ++i) { @@ -157,9 +147,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/engine/staging-common/TestThreads.cpp b/testing/adios2/engine/staging-common/TestThreads.cpp index 71579f2282..6884d88210 100644 --- a/testing/adios2/engine/staging-common/TestThreads.cpp +++ b/testing/adios2/engine/staging-common/TestThreads.cpp @@ -77,8 +77,8 @@ int Read(std::string BaseName, int ID) Reader.Close(); { std::lock_guard guard(StdOutMtx); - std::cout << "Reader got " << expect << " values, " << value_errors - << " were incorrect" << std::endl; + std::cout << "Reader got " << expect << " values, " << value_errors << " were incorrect" + << std::endl; } } catch (std::exception &e) @@ -102,8 +102,8 @@ bool Write(std::string BaseName, int ID) std::lock_guard guard(StdOutMtx); std::cout << "Writer: engine = " << engine << std::endl; } - auto var = io.DefineVariable
("data", adios2::Dims{100, 10}, - adios2::Dims{0, 0}, adios2::Dims{100, 10}); + auto var = io.DefineVariable
("data", adios2::Dims{100, 10}, adios2::Dims{0, 0}, + adios2::Dims{100, 10}); std::array ar; std::iota(ar.begin(), ar.end(), 0); @@ -153,8 +153,7 @@ TEST_F(TestThreads, Basic) bool writer_success = write_fut.get(); EXPECT_TRUE(reader_success); EXPECT_TRUE(writer_success); - EXPECT_EQ(value_errors, 0) - << "We got " << value_errors << " erroneous values at the reader"; + EXPECT_EQ(value_errors, 0) << "We got " << value_errors << " erroneous values at the reader"; } // This test tries to push up to the limits to see if we're leaking FDs, but it diff --git a/testing/adios2/engine/staging-common/TestWriteJoined.cpp b/testing/adios2/engine/staging-common/TestWriteJoined.cpp index e7439f5e8b..0daeff3306 100644 --- a/testing/adios2/engine/staging-common/TestWriteJoined.cpp +++ b/testing/adios2/engine/staging-common/TestWriteJoined.cpp @@ -44,9 +44,8 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) #if ADIOS2_USE_MPI MPI_Comm_rank(testComm, &mpiRank); MPI_Comm_size(testComm, &mpiSize); - const int nblocks = (mpiRank < static_cast(nblocksPerProcess.size()) - ? nblocksPerProcess[mpiRank] - : 1); + const int nblocks = + (mpiRank < static_cast(nblocksPerProcess.size()) ? nblocksPerProcess[mpiRank] : 1); #else const int nblocks = nblocksPerProcess[0]; #endif @@ -65,14 +64,12 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) outIO.SetParameters(engineParams); adios2::Engine writer = outIO.Open(fname, adios2::Mode::Write); - auto bpp_var = outIO.DefineVariable("blocksperprocess", - {nblocksPerProcess.size()}, {0}, + auto bpp_var = outIO.DefineVariable("blocksperprocess", {nblocksPerProcess.size()}, {0}, {nblocksPerProcess.size()}); auto rows_var = outIO.DefineVariable("totalrows"); - auto var = outIO.DefineVariable("table", {adios2::JoinedDim, Ncols}, - {}, {1, Ncols}); + auto var = outIO.DefineVariable("table", {adios2::JoinedDim, Ncols}, {}, {1, Ncols}); if (!mpiRank) { @@ -94,14 +91,12 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) nTotalRows[step] = nMyTotalRows[step]; #if ADIOS2_USE_MPI - MPI_Allreduce(&(nMyTotalRows[step]), &(nTotalRows[step]), 1, MPI_INT, - MPI_SUM, testComm); + MPI_Allreduce(&(nMyTotalRows[step]), &(nTotalRows[step]), 1, MPI_INT, MPI_SUM, testComm); #endif if (!mpiRank) { - std::cout << "Writing " << nTotalRows[step] << " rows in step " - << step << std::endl; + std::cout << "Writing " << nTotalRows[step] << " rows in step " << step << std::endl; } writer.BeginStep(); @@ -111,8 +106,7 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) } if (mpiRank == 0) { - std::cout << "Writer Generating " << nTotalRows[step] << " in total" - << std::endl; + std::cout << "Writer Generating " << nTotalRows[step] << " in total" << std::endl; writer.Put(rows_var, nTotalRows[step]); } for (int block = 0; block < nblocks; ++block) @@ -122,17 +116,16 @@ TEST_F(CommonWriteTest, ADIOS2CommonWrite) { for (size_t col = 0; col < Ncols; col++) { - mytable[row * Ncols + col] = static_cast( - (step + 1) * 1.0 + mpiRank * 0.1 + block * 0.01 + - row * 0.001 + col * 0.0001); + mytable[row * Ncols + col] = + static_cast((step + 1) * 1.0 + mpiRank * 0.1 + block * 0.01 + + row * 0.001 + col * 0.0001); } } var.SetSelection({{}, {Nrows[block], Ncols}}); - std::cout << "Step " << step << " rank " << mpiRank << " block " - << block << " count (" << var.Count()[0] << ", " - << var.Count()[1] << ")" << std::endl; + std::cout << "Step " << step << " rank " << mpiRank << " block " << block << " count (" + << var.Count()[0] << ", " << var.Count()[1] << ")" << std::endl; writer.Put(var, mytable.data(), adios2::Mode::Sync); } @@ -152,9 +145,8 @@ int main(int argc, char **argv) #if ADIOS2_USE_MPI int provided; - int thread_support_level = (engine == "SST" || engine == "sst") - ? MPI_THREAD_MULTIPLE - : MPI_THREAD_SINGLE; + int thread_support_level = + (engine == "SST" || engine == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); diff --git a/testing/adios2/helper/TestDivideBlock.cpp b/testing/adios2/helper/TestDivideBlock.cpp index fdb8533133..e8c908022c 100644 --- a/testing/adios2/helper/TestDivideBlock.cpp +++ b/testing/adios2/helper/TestDivideBlock.cpp @@ -32,14 +32,12 @@ void printVector(const std::vector &v) std::cout << "}"; } -void printTestInfo(const adios2::Dims &count, const size_t blockSize, - const size_t sourceLine) +void printTestInfo(const adios2::Dims &count, const size_t blockSize, const size_t sourceLine) { const size_t ndim = count.size(); std::cout << "\nTest " << ndim << "-D array "; printVector(count); - std::cout << " divide by blockSize " << blockSize << " at line " - << sourceLine << std::endl; + std::cout << " divide by blockSize " << blockSize << " at line " << sourceLine << std::endl; } void printBlockDivisionInfo(const adios2::helper::BlockDivisionInfo &info) @@ -57,8 +55,7 @@ void printBlockDivisionInfo(const adios2::helper::BlockDivisionInfo &info) std::cout << std::endl; } -void printBlock(const adios2::Box &block, - const unsigned int blockID) +void printBlock(const adios2::Box &block, const unsigned int blockID) { std::cout << " block " << blockID << " start = "; printVector(block.first); @@ -67,8 +64,7 @@ void printBlock(const adios2::Box &block, std::cout << std::endl; } -void printBlock(const adios2::Box &block, - const unsigned int blockID, +void printBlock(const adios2::Box &block, const unsigned int blockID, const std::vector &expected_start, const std::vector &expected_count) { @@ -83,8 +79,7 @@ void printBlock(const adios2::Box &block, std::cout << std::endl; } -void assert_block(const adios2::Box &block, - const unsigned int blockID, +void assert_block(const adios2::Box &block, const unsigned int blockID, const std::vector &expected_start, const std::vector &expected_count) { @@ -116,10 +111,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_1D_100) blockSize = 100; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 1); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -139,10 +132,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_1D_100) blockSize = 50; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 2); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -166,10 +157,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_1D_100) blockSize = 17; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 6); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -209,10 +198,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_1D_100) blockSize = 170; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 1); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -232,10 +219,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_1D_100) blockSize = 1; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 100); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -276,10 +261,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_2D_10x10) blockSize = 100; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 1); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -302,10 +285,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_2D_10x10) blockSize = 50; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 2); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -332,10 +313,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_2D_10x10) blockSize = 5; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 20); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -378,10 +357,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_2D_10x10) blockSize = 17; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 6); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -424,10 +401,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_2D_10x10) blockSize = 170; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 1); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -450,10 +425,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_2D_10x10) blockSize = 1; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 100); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -496,10 +469,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_2D_10x10) blockSize = 3; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 30); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -562,10 +533,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_3D_10x10x10) blockSize = 100; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 10); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -599,10 +568,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_3D_10x10x10) blockSize = 500; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 2); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -632,10 +599,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_3D_10x10x10) blockSize = 50; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 20); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -681,10 +646,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_3D_10x10x10) blockSize = 17; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 50); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -734,10 +697,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_3D_10x10x10) blockSize = 170; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 6); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -783,10 +744,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_3D_10x10x10) blockSize = 1; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 1000); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -832,10 +791,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_3D_10x10x10) blockSize = 3; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 300); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -906,10 +863,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_3D_24x24x48) blockSize = 5000; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 6); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -952,10 +907,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_3D_3x2x5) blockSize = 2; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 12); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -1010,10 +963,8 @@ TEST(ADIOS2DivideBlock, ADIOS2DivideBlock_4D_3x2x5x4) blockSize = 6; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 18); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); diff --git a/testing/adios2/helper/TestHelperStrings.cpp b/testing/adios2/helper/TestHelperStrings.cpp index 0c48ba05a1..6caad72635 100644 --- a/testing/adios2/helper/TestHelperStrings.cpp +++ b/testing/adios2/helper/TestHelperStrings.cpp @@ -22,8 +22,7 @@ TEST(ADIOS2HelperString, ADIOS2HelperStringFNF) const std::string fname("nosuchfile.txt"); const std::string hint(""); - ASSERT_THROW(adios2::helper::FileToString(fname, hint), - std::ios_base::failure); + ASSERT_THROW(adios2::helper::FileToString(fname, hint), std::ios_base::failure); } TEST(ADIOS2HelperString, ADIOS2HelperStringParameterMapFromVector) @@ -32,22 +31,17 @@ TEST(ADIOS2HelperString, ADIOS2HelperStringParameterMapFromVector) const std::vector badparam_in = {"badparam"}; const std::vector emptyparam_in = {"emptyparam="}; const std::vector dupparam_in = {"dupparam=1", "dupparam=2"}; - const std::vector param_in = {"param1=1", "param2=2", - "param3=3"}; + const std::vector param_in = {"param1=1", "param2=2", "param3=3"}; - adios2::Params parameters = - adios2::helper::BuildParametersMap(param_in, '='); + adios2::Params parameters = adios2::helper::BuildParametersMap(param_in, '='); ASSERT_EQ(parameters.find("param1")->second, "1"); ASSERT_EQ(parameters.find("param2")->second, "2"); ASSERT_EQ(parameters.find("param3")->second, "3"); - ASSERT_THROW(adios2::helper::BuildParametersMap(badparam_in, '='), - std::invalid_argument); - ASSERT_THROW(adios2::helper::BuildParametersMap(emptyparam_in, '='), - std::invalid_argument); - ASSERT_THROW(adios2::helper::BuildParametersMap(dupparam_in, '='), - std::invalid_argument); + ASSERT_THROW(adios2::helper::BuildParametersMap(badparam_in, '='), std::invalid_argument); + ASSERT_THROW(adios2::helper::BuildParametersMap(emptyparam_in, '='), std::invalid_argument); + ASSERT_THROW(adios2::helper::BuildParametersMap(dupparam_in, '='), std::invalid_argument); } TEST(ADIOS2HelperString, ADIOS2HelperStringParameterMapFromString) @@ -56,23 +50,19 @@ TEST(ADIOS2HelperString, ADIOS2HelperStringParameterMapFromString) const std::string badparam_in = "badparam"; const std::string emptyparam_in = "emptyparam="; const std::string dupparam_in = "dupparam = 1 , dupparam=2"; - const std::string param_in = - "param1=1, param2=2, " - " param3=3"; + const std::string param_in = "param1=1, param2=2, " + " param3=3"; - adios2::Params parameters = - adios2::helper::BuildParametersMap(param_in, '=', ','); + adios2::Params parameters = adios2::helper::BuildParametersMap(param_in, '=', ','); ASSERT_EQ(parameters.find("param1")->second, "1"); ASSERT_EQ(parameters.find("param2")->second, "2"); ASSERT_EQ(parameters.find("param3")->second, "3"); - ASSERT_THROW(adios2::helper::BuildParametersMap(badparam_in, '=', ','), - std::invalid_argument); + ASSERT_THROW(adios2::helper::BuildParametersMap(badparam_in, '=', ','), std::invalid_argument); ASSERT_THROW(adios2::helper::BuildParametersMap(emptyparam_in, '=', ','), std::invalid_argument); - ASSERT_THROW(adios2::helper::BuildParametersMap(dupparam_in, '=', ','), - std::invalid_argument); + ASSERT_THROW(adios2::helper::BuildParametersMap(dupparam_in, '=', ','), std::invalid_argument); } TEST(ADIOS2HelperString, ADIOS2HelperStringAddExtension) @@ -124,15 +114,12 @@ TEST(ADIOS2HelperString, ADIOS2HelperStringConversion) const std::string notnum("notnum"); const std::string hint(""); - const double diff = - std::abs(adios2::helper::StringTo(dbl, hint) - 123.123); + const double diff = std::abs(adios2::helper::StringTo(dbl, hint) - 123.123); ASSERT_LT(diff, 1E-4); - ASSERT_THROW(adios2::helper::StringTo(notnum, hint), - std::invalid_argument); + ASSERT_THROW(adios2::helper::StringTo(notnum, hint), std::invalid_argument); ASSERT_EQ(adios2::helper::StringTo(uint, hint), 123); - ASSERT_THROW(adios2::helper::StringTo(notnum, hint), - std::invalid_argument); + ASSERT_THROW(adios2::helper::StringTo(notnum, hint), std::invalid_argument); } TEST(ADIOS2HelperString, ADIOS2HelperDimString) diff --git a/testing/adios2/helper/TestMinMaxs.cpp b/testing/adios2/helper/TestMinMaxs.cpp index 91d45d41bc..b6c3cf9b65 100644 --- a/testing/adios2/helper/TestMinMaxs.cpp +++ b/testing/adios2/helper/TestMinMaxs.cpp @@ -36,14 +36,12 @@ void printVector(const std::vector &v) std::cout << "}"; } -void printTestInfo(const adios2::Dims &count, const size_t blockSize, - const size_t sourceLine) +void printTestInfo(const adios2::Dims &count, const size_t blockSize, const size_t sourceLine) { const size_t ndim = count.size(); std::cout << "\nTest " << ndim << "-D array "; printVector(count); - std::cout << " divide by blockSize " << blockSize << " at line " - << sourceLine << std::endl; + std::cout << " divide by blockSize " << blockSize << " at line " << sourceLine << std::endl; } void printBlockDivisionInfo(const adios2::helper::BlockDivisionInfo &info) @@ -74,8 +72,7 @@ template void printMinMax(const std::vector &expected_minmax, const T &expected_bmin, const T &expected_bmax) { - std::cout << " expected bmin = " << expected_bmin - << " bmax = " << expected_bmax; + std::cout << " expected bmin = " << expected_bmin << " bmax = " << expected_bmax; std::cout << " min-max = \n "; printVector(expected_minmax); std::cout << std::endl; @@ -117,9 +114,8 @@ void assert_block(const adios2::Box &block, const int blockID, } template -void assert_minmax(const size_t nBlocks, const T &bmin, const T &bmax, - const std::vector &minmax, const T &expected_bmin, - const T &expected_bmax, +void assert_minmax(const size_t nBlocks, const T &bmin, const T &bmax, const std::vector &minmax, + const T &expected_bmin, const T &expected_bmax, const std::vector &expected_minmax) { printMinMax(expected_minmax, expected_bmin, expected_bmax); @@ -152,18 +148,15 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_1D_100) blockSize = 100; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); /*blockID = 0; block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {0}, {100});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 99, {0, 99}); } @@ -171,10 +164,8 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_1D_100) blockSize = 50; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); /*blockID = 0; @@ -185,20 +176,16 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_1D_100) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {50}, {50});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); - assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 99, - {0, 49, 50, 99}); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); + assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 99, {0, 49, 50, 99}); } { blockSize = 17; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); /*blockID = 0; @@ -225,8 +212,7 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_1D_100) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {84}, {16});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 99, {0, 16, 17, 33, 34, 50, 51, 67, 68, 83, 84, 99}); } @@ -235,18 +221,15 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_1D_100) blockSize = 170; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); /*blockID = 0; block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {0}, {100});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 99, {0, 99}); } @@ -254,10 +237,8 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_1D_100) blockSize = 1; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 100); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -284,8 +265,7 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_1D_100) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {99}, {1});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); std::vector mm(200); for (int j = 0; j < 100; j++) { @@ -315,18 +295,15 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_2D_10x10) blockSize = 100; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); /*blockID = 0; block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {0, 0}, {10, 10});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 99, {0, 99}); } @@ -334,10 +311,8 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_2D_10x10) blockSize = 50; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); /*blockID = 0; @@ -348,20 +323,16 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_2D_10x10) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {5, 0}, {5, 10});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); - assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 99, - {0, 49, 50, 99}); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); + assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 99, {0, 49, 50, 99}); } { blockSize = 5; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 20); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -399,8 +370,7 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_2D_10x10) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {9, 5}, {1, 5});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 99, {0, 4, 5, 9, 10, 14, 15, 19, 20, 24, 25, 29, 30, 34, 35, 39, 40, 44, 45, 49, 50, 54, 55, 59, 60, 64, 65, 69, @@ -411,10 +381,8 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_2D_10x10) blockSize = 17; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 6); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -452,8 +420,7 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_2D_10x10) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {9, 0}, {1, 10});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 99, {0, 19, 20, 39, 40, 59, 60, 79, 80, 89, 90, 99}); } @@ -462,10 +429,8 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_2D_10x10) blockSize = 170; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 1); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -483,8 +448,7 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_2D_10x10) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {0, 0}, {10, 10});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 99, {0, 99}); } @@ -492,10 +456,8 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_2D_10x10) blockSize = 1; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 100); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -533,8 +495,7 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_2D_10x10) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {9, 9}, {1, 1});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); std::vector mm(200); for (int j = 0; j < 100; j++) { @@ -548,10 +509,8 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_2D_10x10) blockSize = 3; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 30); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -600,14 +559,12 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_2D_10x10) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {9, 7}, {1, 3}); */ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 99, - {0, 3, 4, 6, 7, 9, 10, 13, 14, 16, 17, 19, - 20, 23, 24, 26, 27, 29, 30, 33, 34, 36, 37, 39, - 40, 43, 44, 46, 47, 49, 50, 53, 54, 56, 57, 59, - 60, 63, 64, 66, 67, 69, 70, 73, 74, 76, 77, 79, - 80, 83, 84, 86, 87, 89, 90, 93, 94, 96, 97, 99}); + {0, 3, 4, 6, 7, 9, 10, 13, 14, 16, 17, 19, 20, 23, 24, + 26, 27, 29, 30, 33, 34, 36, 37, 39, 40, 43, 44, 46, 47, 49, + 50, 53, 54, 56, 57, 59, 60, 63, 64, 66, 67, 69, 70, 73, 74, + 76, 77, 79, 80, 83, 84, 86, 87, 89, 90, 93, 94, 96, 97, 99}); } } @@ -630,10 +587,8 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_3D_10x10x10) blockSize = 100; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 10); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -662,8 +617,7 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_3D_10x10x10) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {9, 0, 0}, {1, 10, 10});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 999, {0, 99, 100, 199, 200, 299, 300, 399, 400, 499, 500, 599, 600, 699, 700, 799, 800, 899, 900, 999}); @@ -673,10 +627,8 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_3D_10x10x10) blockSize = 500; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 2); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -700,20 +652,16 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_3D_10x10x10) blockID = 1; block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {5, 0, 0}, {5, 10, 10});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); - assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 999, - {0, 499, 500, 999}); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); + assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 999, {0, 499, 500, 999}); } { blockSize = 50; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 20); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -754,23 +702,19 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_3D_10x10x10) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {9, 5, 0}, {1, 5, 10});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 999, - {0, 49, 50, 99, 100, 149, 150, 199, 200, 249, - 250, 299, 300, 349, 350, 399, 400, 449, 450, 499, - 500, 549, 550, 599, 600, 649, 650, 699, 700, 749, - 750, 799, 800, 849, 850, 899, 900, 949, 950, 999}); + {0, 49, 50, 99, 100, 149, 150, 199, 200, 249, 250, 299, 300, 349, + 350, 399, 400, 449, 450, 499, 500, 549, 550, 599, 600, 649, 650, 699, + 700, 749, 750, 799, 800, 849, 850, 899, 900, 949, 950, 999}); } { blockSize = 17; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 50); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -815,8 +759,7 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_3D_10x10x10) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {9, 8, 0}, {1, 2, 10});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); std::vector mm(100); for (int j = 0; j < 50; j++) { @@ -830,10 +773,8 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_3D_10x10x10) blockSize = 170; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 6); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -874,21 +815,17 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_3D_10x10x10) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {9, 0, 0}, {1, 10, 10}); */ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); - assert_minmax( - subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 999, - {0, 199, 200, 399, 400, 599, 600, 799, 800, 899, 900, 999}); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); + assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 999, + {0, 199, 200, 399, 400, 599, 600, 799, 800, 899, 900, 999}); } { blockSize = 1; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 1000); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -929,8 +866,7 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_3D_10x10x10) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {9, 9, 9}, {1, 1, 1});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); std::vector mm(2000); for (int j = 0; j < 1000; j++) { @@ -944,10 +880,8 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_3D_10x10x10) blockSize = 3; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 300); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -1004,8 +938,7 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_3D_10x10x10) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {9, 9, 7}, {1, 1, 3});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); std::vector mm(600); for (int i = 0; i < 10; i++) { @@ -1046,10 +979,8 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_3D_24x24x48) blockSize = 5000; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 6); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -1078,11 +1009,9 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_3D_24x24x48) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {20, 0, 0}, {4, 24, 48});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 27647, - {0, 4607, 4608, 9215, 9216, 13823, 13824, 18431, 18432, - 23039, 23040, 27647}); + {0, 4607, 4608, 9215, 9216, 13823, 13824, 18431, 18432, 23039, 23040, 27647}); } } @@ -1106,10 +1035,8 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_4D_3x2x5x4) blockSize = 6; printTestInfo(count, blockSize, __LINE__); - struct adios2::helper::BlockDivisionInfo subBlockInfo = - adios2::helper::DivideBlock( - count, blockSize, - adios2::helper::BlockDivisionMethod::Contiguous); + struct adios2::helper::BlockDivisionInfo subBlockInfo = adios2::helper::DivideBlock( + count, blockSize, adios2::helper::BlockDivisionMethod::Contiguous); printBlockDivisionInfo(subBlockInfo); ASSERT_EQ(subBlockInfo.NBlocks, 18); ASSERT_EQ(subBlockInfo.SubBlockSize, blockSize); @@ -1161,8 +1088,7 @@ TEST(ADIOS2MinMaxs, ADIOS2MinMaxs_4D_3x2x5x4) block = adios2::helper::GetSubBlock(count, subBlockInfo, blockID); assert_block(block, blockID, {2, 1, 4, 0}, {1, 1, 1, 4});*/ - adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, - MinMaxs, Min, Max, 1); + adios2::helper::GetMinMaxSubblocks(data.data(), count, subBlockInfo, MinMaxs, Min, Max, 1); assert_minmax(subBlockInfo.NBlocks, Min, Max, MinMaxs, 0, 119, {0, 7, 8, 15, 16, 19, 20, 27, 28, 35, 36, 39, 40, 47, 48, 55, 56, 59, 60, 67, 68, 75, 76, 79, diff --git a/testing/adios2/hierarchy/TestBPHierarchicalReading.cpp b/testing/adios2/hierarchy/TestBPHierarchicalReading.cpp index e1150c1186..c4039dbe19 100644 --- a/testing/adios2/hierarchy/TestBPHierarchicalReading.cpp +++ b/testing/adios2/hierarchy/TestBPHierarchicalReading.cpp @@ -23,8 +23,7 @@ class ADIOSHierarchicalReadVariableTest : public ::testing::Test TEST_F(ADIOSHierarchicalReadVariableTest, Read) { - std::string filename = - "ADIOSHierarchicalReadVariable." + engineName + ".bp"; + std::string filename = "ADIOSHierarchicalReadVariable." + engineName + ".bp"; // Number of steps const std::size_t NSteps = 2; @@ -56,18 +55,17 @@ TEST_F(ADIOSHierarchicalReadVariableTest, Read) const adios2::Dims start = {rank * Nx}; const adios2::Dims count = {Nx}; - auto var1 = io.DefineVariable( - "group1/group2/group3/group4/variable1", shape, start, count); - auto var2 = io.DefineVariable( - "group1/group2/group3/group4/variable2", shape, start, count); - auto var3 = io.DefineVariable( - "group1/group2/group3/group4/variable3", shape, start, count); - auto var4 = io.DefineVariable( - "group1/group2/group3/group4/variable4", shape, start, count); - auto var5 = io.DefineVariable( - "group1/group2/group3/group4/variable5", shape, start, count); - auto var6 = - io.DefineVariable("variable6", shape, start, count); + auto var1 = io.DefineVariable("group1/group2/group3/group4/variable1", shape, + start, count); + auto var2 = io.DefineVariable("group1/group2/group3/group4/variable2", shape, + start, count); + auto var3 = io.DefineVariable("group1/group2/group3/group4/variable3", shape, + start, count); + auto var4 = io.DefineVariable("group1/group2/group3/group4/variable4", shape, + start, count); + auto var5 = io.DefineVariable("group1/group2/group3/group4/variable5", shape, + start, count); + auto var6 = io.DefineVariable("variable6", shape, start, count); std::vector Ints = {0, 1, 2, 3, 4, 5, 6, 7, 8, 9}; for (size_t step = 0; step < NSteps; ++step) diff --git a/testing/adios2/interface/TestADIOSDefineAttribute.cpp b/testing/adios2/interface/TestADIOSDefineAttribute.cpp index 7181457645..86ddc34f78 100644 --- a/testing/adios2/interface/TestADIOSDefineAttribute.cpp +++ b/testing/adios2/interface/TestADIOSDefineAttribute.cpp @@ -14,8 +14,7 @@ class ADIOSDefineAttributeTest : public ::testing::Test { public: #if ADIOS2_USE_MPI - ADIOSDefineAttributeTest() - : adios(MPI_COMM_WORLD), io(adios.DeclareIO("TestIO")) + ADIOSDefineAttributeTest() : adios(MPI_COMM_WORLD), io(adios.DeclareIO("TestIO")) #else ADIOSDefineAttributeTest() : adios(), io(adios.DeclareIO("TestIO")) #endif @@ -46,11 +45,9 @@ TEST_F(ADIOSDefineAttributeTest, DefineAttributeNameException) EXPECT_EQ(availableAttributes.size(), 1); // Redefinition is not allowed (non-modifiable attribute) - EXPECT_THROW(io.DefineAttribute(name, "0"), - std::invalid_argument); + EXPECT_THROW(io.DefineAttribute(name, "0"), std::invalid_argument); - auto attributeString1 = - io.InquireAttribute("NonExistingAttribute"); + auto attributeString1 = io.InquireAttribute("NonExistingAttribute"); EXPECT_FALSE(attributeString1); auto attributeString2 = io.InquireAttribute(name); @@ -81,8 +78,7 @@ TEST_F(ADIOSDefineAttributeTest, DefineAttributeTypeByValue) #endif // Define unique data for each process - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, 0, mpiRank, mpiSize); + SmallTestData currentTestData = generateNewSmallTestData(m_TestData, 0, mpiRank, mpiSize); const std::string mpiRankString(std::to_string(mpiRank)); const std::string s1_Single("s1_Single_" + mpiRankString); @@ -98,54 +94,32 @@ TEST_F(ADIOSDefineAttributeTest, DefineAttributeTypeByValue) const std::string double_Single("double_Single_" + mpiRankString); // Define ADIOS global value - auto attributeS1 = - io.DefineAttribute(s1_Single, currentTestData.S1); - auto attributeI8 = - io.DefineAttribute(i8_Single, currentTestData.I8.front()); - auto attributeI16 = - io.DefineAttribute(i16_Single, currentTestData.I16.front()); - auto attributeI32 = - io.DefineAttribute(i32_Single, currentTestData.I32.front()); - auto attributeI64 = - io.DefineAttribute(i64_Single, currentTestData.I64.front()); + auto attributeS1 = io.DefineAttribute(s1_Single, currentTestData.S1); + auto attributeI8 = io.DefineAttribute(i8_Single, currentTestData.I8.front()); + auto attributeI16 = io.DefineAttribute(i16_Single, currentTestData.I16.front()); + auto attributeI32 = io.DefineAttribute(i32_Single, currentTestData.I32.front()); + auto attributeI64 = io.DefineAttribute(i64_Single, currentTestData.I64.front()); - auto attributeU8 = - io.DefineAttribute(u8_Single, currentTestData.U8.front()); - auto attributeU16 = - io.DefineAttribute(u16_Single, currentTestData.U16.front()); - auto attributeU32 = - io.DefineAttribute(u32_Single, currentTestData.U32.front()); - auto attributeU64 = - io.DefineAttribute(u64_Single, currentTestData.U64.front()); + auto attributeU8 = io.DefineAttribute(u8_Single, currentTestData.U8.front()); + auto attributeU16 = io.DefineAttribute(u16_Single, currentTestData.U16.front()); + auto attributeU32 = io.DefineAttribute(u32_Single, currentTestData.U32.front()); + auto attributeU64 = io.DefineAttribute(u64_Single, currentTestData.U64.front()); - auto attributeFloat = - io.DefineAttribute(float_Single, currentTestData.R32.front()); - auto attributeDouble = - io.DefineAttribute(double_Single, currentTestData.R64.front()); + auto attributeFloat = io.DefineAttribute(float_Single, currentTestData.R32.front()); + auto attributeDouble = io.DefineAttribute(double_Single, currentTestData.R64.front()); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify the members are correct std::cout << "STRING name: " << attributeS1.Name() << "\n"; @@ -251,8 +225,7 @@ TEST_F(ADIOSDefineAttributeTest, DefineAttributeTypeByReference) #endif // Define unique data for each process - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, 0, mpiRank, mpiSize); + SmallTestData currentTestData = generateNewSmallTestData(m_TestData, 0, mpiRank, mpiSize); std::string mpiRankString = std::to_string(mpiRank); std::string s3_Single = std::string("s3_Single_") + mpiRankString; @@ -268,54 +241,42 @@ TEST_F(ADIOSDefineAttributeTest, DefineAttributeTypeByReference) std::string double_Single = std::string("double_Single_") + mpiRankString; // Define ADIOS global value - auto attributeS3 = io.DefineAttribute( - s3_Single, currentTestData.S3.data(), 3); - auto attributeI8 = io.DefineAttribute( - i8_Single, currentTestData.I8.data(), numberOfElements); - auto attributeI16 = io.DefineAttribute( - i16_Single, currentTestData.I16.data(), numberOfElements); - auto attributeI32 = io.DefineAttribute( - i32_Single, currentTestData.I32.data(), numberOfElements); - auto attributeI64 = io.DefineAttribute( - i64_Single, currentTestData.I64.data(), numberOfElements); - - auto attributeU8 = io.DefineAttribute( - u8_Single, currentTestData.U8.data(), numberOfElements); - auto attributeU16 = io.DefineAttribute( - u16_Single, currentTestData.U16.data(), numberOfElements); - auto attributeU32 = io.DefineAttribute( - u32_Single, currentTestData.U32.data(), numberOfElements); - auto attributeU64 = io.DefineAttribute( - u64_Single, currentTestData.U64.data(), numberOfElements); - - auto attributeFloat = io.DefineAttribute( - float_Single, currentTestData.R32.data(), numberOfElements); - auto attributeDouble = io.DefineAttribute( - double_Single, currentTestData.R64.data(), numberOfElements); + auto attributeS3 = io.DefineAttribute(s3_Single, currentTestData.S3.data(), 3); + auto attributeI8 = + io.DefineAttribute(i8_Single, currentTestData.I8.data(), numberOfElements); + auto attributeI16 = + io.DefineAttribute(i16_Single, currentTestData.I16.data(), numberOfElements); + auto attributeI32 = + io.DefineAttribute(i32_Single, currentTestData.I32.data(), numberOfElements); + auto attributeI64 = + io.DefineAttribute(i64_Single, currentTestData.I64.data(), numberOfElements); + + auto attributeU8 = + io.DefineAttribute(u8_Single, currentTestData.U8.data(), numberOfElements); + auto attributeU16 = + io.DefineAttribute(u16_Single, currentTestData.U16.data(), numberOfElements); + auto attributeU32 = + io.DefineAttribute(u32_Single, currentTestData.U32.data(), numberOfElements); + auto attributeU64 = + io.DefineAttribute(u64_Single, currentTestData.U64.data(), numberOfElements); + + auto attributeFloat = + io.DefineAttribute(float_Single, currentTestData.R32.data(), numberOfElements); + auto attributeDouble = + io.DefineAttribute(double_Single, currentTestData.R64.data(), numberOfElements); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify the members are correct ASSERT_EQ(attributeS3.Data().size() == 1, false); @@ -410,8 +371,7 @@ TEST_F(ADIOSDefineAttributeTest, GetAttribute) #endif // Define unique data for each process - SmallTestData currentTestData = - generateNewSmallTestData(m_TestData, 0, mpiRank, mpiSize); + SmallTestData currentTestData = generateNewSmallTestData(m_TestData, 0, mpiRank, mpiSize); std::string mpiRankString = std::to_string(mpiRank); std::string s3_Single = std::string("s3_Array_") + mpiRankString; @@ -428,28 +388,17 @@ TEST_F(ADIOSDefineAttributeTest, GetAttribute) // Define ADIOS global value { - io.DefineAttribute(s3_Single, currentTestData.S3.data(), - 3); - io.DefineAttribute(i8_Single, currentTestData.I8.data(), - numberOfElements); - io.DefineAttribute(i16_Single, currentTestData.I16.data(), - numberOfElements); - io.DefineAttribute(i32_Single, currentTestData.I32.data(), - numberOfElements); - io.DefineAttribute(i64_Single, currentTestData.I64.data(), - numberOfElements); - io.DefineAttribute(u8_Single, currentTestData.U8.data(), - numberOfElements); - io.DefineAttribute(u16_Single, currentTestData.U16.data(), - numberOfElements); - io.DefineAttribute(u32_Single, currentTestData.U32.data(), - numberOfElements); - io.DefineAttribute(u64_Single, currentTestData.U64.data(), - numberOfElements); - io.DefineAttribute(float_Single, currentTestData.R32.data(), - numberOfElements); - io.DefineAttribute(double_Single, currentTestData.R64.data(), - numberOfElements); + io.DefineAttribute(s3_Single, currentTestData.S3.data(), 3); + io.DefineAttribute(i8_Single, currentTestData.I8.data(), numberOfElements); + io.DefineAttribute(i16_Single, currentTestData.I16.data(), numberOfElements); + io.DefineAttribute(i32_Single, currentTestData.I32.data(), numberOfElements); + io.DefineAttribute(i64_Single, currentTestData.I64.data(), numberOfElements); + io.DefineAttribute(u8_Single, currentTestData.U8.data(), numberOfElements); + io.DefineAttribute(u16_Single, currentTestData.U16.data(), numberOfElements); + io.DefineAttribute(u32_Single, currentTestData.U32.data(), numberOfElements); + io.DefineAttribute(u64_Single, currentTestData.U64.data(), numberOfElements); + io.DefineAttribute(float_Single, currentTestData.R32.data(), numberOfElements); + io.DefineAttribute(double_Single, currentTestData.R64.data(), numberOfElements); } auto attributeS3 = io.InquireAttribute(s3_Single); @@ -465,28 +414,17 @@ TEST_F(ADIOSDefineAttributeTest, GetAttribute) auto attributeDouble = io.InquireAttribute(double_Single); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify the members are correct ASSERT_EQ(attributeS3.Data().size() == 1, false); @@ -679,8 +617,7 @@ TEST_F(ADIOSDefineAttributeTest, DefineRemoveDefine) EXPECT_EQ(attributes[0].Name(), "string_0"); EXPECT_EQ(attributes[0].Data().front(), "attribute_0_new"); - auto attribute2 = - io.DefineAttribute("string_2", "attribute_2"); + auto attribute2 = io.DefineAttribute("string_2", "attribute_2"); EXPECT_TRUE(attribute2); EXPECT_EQ(attribute2.Name(), "string_2"); EXPECT_EQ(attribute2.Data().front(), "attribute_2"); @@ -777,23 +714,19 @@ TEST_F(ADIOSDefineAttributeTest, VariableException) { adios2::IO io = adios.DeclareIO("TestIO"); - EXPECT_THROW( - io.DefineAttribute("Hello Value", "Value", "myVar1"), - std::invalid_argument); + EXPECT_THROW(io.DefineAttribute("Hello Value", "Value", "myVar1"), + std::invalid_argument); - EXPECT_THROW(io.DefineAttribute( - "Hello Array", numbers.data(), numbers.size(), - "myVar1", separator), + EXPECT_THROW(io.DefineAttribute("Hello Array", numbers.data(), numbers.size(), + "myVar1", separator), std::invalid_argument); io.DefineVariable("myVar1"); - EXPECT_NO_THROW( - io.DefineAttribute("Hello Value", "Value", "myVar1")); + EXPECT_NO_THROW(io.DefineAttribute("Hello Value", "Value", "myVar1")); - EXPECT_NO_THROW(io.DefineAttribute( - "Hello Array", numbers.data(), numbers.size(), "myVar1", - separator)); + EXPECT_NO_THROW(io.DefineAttribute("Hello Array", numbers.data(), + numbers.size(), "myVar1", separator)); } } diff --git a/testing/adios2/interface/TestADIOSDefineVariable.cpp b/testing/adios2/interface/TestADIOSDefineVariable.cpp index 3e8ae95f82..0029cfad5c 100644 --- a/testing/adios2/interface/TestADIOSDefineVariable.cpp +++ b/testing/adios2/interface/TestADIOSDefineVariable.cpp @@ -12,8 +12,7 @@ class ADIOSDefineVariableTest : public ::testing::Test { public: #if ADIOS2_USE_MPI - ADIOSDefineVariableTest() - : adios(MPI_COMM_WORLD), io(adios.DeclareIO("TestIO")) + ADIOSDefineVariableTest() : adios(MPI_COMM_WORLD), io(adios.DeclareIO("TestIO")) #else ADIOSDefineVariableTest() : adios(), io(adios.DeclareIO("TestIO")) #endif @@ -33,8 +32,7 @@ TEST_F(ADIOSDefineVariableTest, DefineGlobalValue) auto globalvalue = io.DefineVariable(name); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify the dimensions, name, and type are correct ASSERT_EQ(globalvalue.Shape().size(), 0); @@ -47,12 +45,10 @@ TEST_F(ADIOSDefineVariableTest, DefineGlobalValue) TEST_F(ADIOSDefineVariableTest, DefineLocalValue) { // Define ADIOS local value (a value changing across processes) - auto localvalue = - io.DefineVariable("localvalue", {adios2::LocalValueDim}); + auto localvalue = io.DefineVariable("localvalue", {adios2::LocalValueDim}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify the dimensions, name, and type are correct ASSERT_EQ(localvalue.Shape().size(), 1); @@ -72,21 +68,16 @@ TEST_F(ADIOSDefineVariableTest, DefineGlobalArray) #endif const std::size_t Nx(10), Ny(20), Nz(30); - adios2::Dims shape{static_cast(Nx * mpiSize), - static_cast(Ny * mpiSize), + adios2::Dims shape{static_cast(Nx * mpiSize), static_cast(Ny * mpiSize), static_cast(Nz * mpiSize)}; - adios2::Dims start{static_cast(Nx * mpiRank), - static_cast(Ny * mpiRank), + adios2::Dims start{static_cast(Nx * mpiRank), static_cast(Ny * mpiRank), static_cast(Nz * mpiRank)}; - adios2::Dims count{static_cast(Nx), static_cast(Ny), - static_cast(Nz)}; + adios2::Dims count{static_cast(Nx), static_cast(Ny), static_cast(Nz)}; // Define ADIOS global array - auto globalarray = - io.DefineVariable("globalarray", shape, start, count); + auto globalarray = io.DefineVariable("globalarray", shape, start, count); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify the dimensions, name, and type are correct ASSERT_EQ(globalarray.Shape().size(), 3); @@ -116,20 +107,16 @@ TEST_F(ADIOSDefineVariableTest, DefineGlobalArrayWithSelections) #endif const std::size_t Nx(10), Ny(20), Nz(30); - adios2::Dims shape{static_cast(Nx * mpiSize), - static_cast(Ny * mpiSize), + adios2::Dims shape{static_cast(Nx * mpiSize), static_cast(Ny * mpiSize), static_cast(Nz * mpiSize)}; - adios2::Dims start{static_cast(Nx * mpiRank), - static_cast(Ny * mpiRank), + adios2::Dims start{static_cast(Nx * mpiRank), static_cast(Ny * mpiRank), static_cast(Nz * mpiRank)}; - adios2::Dims count{static_cast(Nx), static_cast(Ny), - static_cast(Nz)}; + adios2::Dims count{static_cast(Nx), static_cast(Ny), static_cast(Nz)}; // Define ADIOS global array auto globalarray = io.DefineVariable("globalarray", shape); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Make a 3D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces @@ -163,21 +150,16 @@ TEST_F(ADIOSDefineVariableTest, DefineGlobalArrayConstantDims) #endif const std::size_t Nx(10), Ny(20), Nz(30); - adios2::Dims shape{static_cast(Nx * mpiSize), - static_cast(Ny * mpiSize), + adios2::Dims shape{static_cast(Nx * mpiSize), static_cast(Ny * mpiSize), static_cast(Nz * mpiSize)}; - adios2::Dims start{static_cast(Nx * mpiRank), - static_cast(Ny * mpiRank), + adios2::Dims start{static_cast(Nx * mpiRank), static_cast(Ny * mpiRank), static_cast(Nz * mpiRank)}; - adios2::Dims count{static_cast(Nx), static_cast(Ny), - static_cast(Nz)}; + adios2::Dims count{static_cast(Nx), static_cast(Ny), static_cast(Nz)}; // Define ADIOS global array - auto globalarray = - io.DefineVariable("globalarray", shape, start, count, true); + auto globalarray = io.DefineVariable("globalarray", shape, start, count, true); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Make a 3D selection to describe the local dimensions of the // variable we write and its offsets in the global spaces @@ -205,8 +187,7 @@ TEST_F(ADIOSDefineVariableTest, DefineGlobalArrayInvalidLocalValueDim) { // Define ADIOS global array std::size_t n = 50; - EXPECT_THROW(io.DefineVariable("globalarray", - {100, adios2::LocalValueDim, 30}, + EXPECT_THROW(io.DefineVariable("globalarray", {100, adios2::LocalValueDim, 30}, {50, n / 2, 0}, {10, n / 2, 30}), std::invalid_argument); } @@ -215,12 +196,10 @@ TEST_F(ADIOSDefineVariableTest, DefineLocalArray) { // Define ADIOS local array (no global dimensions, no offsets) std::size_t n = 50; - auto localarray = - io.DefineVariable("localarray", {}, {}, {10, n / 2, 30}); + auto localarray = io.DefineVariable("localarray", {}, {}, {10, n / 2, 30}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify the dimensions, name, and type are correct ASSERT_EQ(localarray.Shape().size(), 0); @@ -243,22 +222,17 @@ TEST_F(ADIOSDefineVariableTest, DefineLocalArrayWithSelection) #endif const std::size_t Nx(10), Ny(20), Nz(30); - adios2::Dims shape{static_cast(Nx * mpiSize), - static_cast(Ny * mpiSize), + adios2::Dims shape{static_cast(Nx * mpiSize), static_cast(Ny * mpiSize), static_cast(Nz * mpiSize)}; - adios2::Dims start{static_cast(Nx * mpiRank), - static_cast(Ny * mpiRank), + adios2::Dims start{static_cast(Nx * mpiRank), static_cast(Ny * mpiRank), static_cast(Nz * mpiRank)}; - adios2::Dims count{static_cast(Nx), static_cast(Ny), - static_cast(Nz)}; + adios2::Dims count{static_cast(Nx), static_cast(Ny), static_cast(Nz)}; // Define ADIOS global array auto localArray = io.DefineVariable( - "localArray", {}, {}, - {adios2::UnknownDim, adios2::UnknownDim, adios2::UnknownDim}); + "localArray", {}, {}, {adios2::UnknownDim, adios2::UnknownDim, adios2::UnknownDim}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); ASSERT_EQ(localArray.Shape().size(), 0); EXPECT_EQ(localArray.Start().size(), 0); EXPECT_EQ(localArray.Count().size(), 3); @@ -305,8 +279,7 @@ TEST_F(ADIOSDefineVariableTest, DefineLocalArrayConstantDims) auto localArray = io.DefineVariable("localArray", {}, {}, count, true); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); adios2::Box sel({}, count); EXPECT_THROW(localArray.SetSelection(sel), std::invalid_argument); @@ -327,8 +300,7 @@ TEST_F(ADIOSDefineVariableTest, DefineLocalArrayInvalidOffsets) // Define ADIOS local array but try to add offsets std::size_t n = 50; - EXPECT_THROW(io.DefineVariable("localarray", {}, {50, n / 2, 0}, - {10, n / 2, 30}), + EXPECT_THROW(io.DefineVariable("localarray", {}, {50, n / 2, 0}, {10, n / 2, 30}), std::invalid_argument); } @@ -336,12 +308,11 @@ TEST_F(ADIOSDefineVariableTest, DefineJoinedArrayFirstDim) { // Define ADIOS joined array std::size_t n = 50; - auto joinedarray = io.DefineVariable( - "joinedarray", {adios2::JoinedDim, n, 30}, {}, {10, n, 30}); + auto joinedarray = + io.DefineVariable("joinedarray", {adios2::JoinedDim, n, 30}, {}, {10, n, 30}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify the dimensions, name, and type are correct ASSERT_EQ(joinedarray.Shape().size(), 3); @@ -361,12 +332,11 @@ TEST_F(ADIOSDefineVariableTest, DefineJoinedArraySecondDim) { // Define ADIOS joined array std::size_t n = 50; - auto joinedarray = io.DefineVariable( - "joinedarray", {n, adios2::JoinedDim, 30}, {0, 0, 0}, {n, 10, 30}); + auto joinedarray = + io.DefineVariable("joinedarray", {n, adios2::JoinedDim, 30}, {0, 0, 0}, {n, 10, 30}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify the dimensions, name, and type are correct ASSERT_EQ(joinedarray.Shape().size(), 3); @@ -390,9 +360,8 @@ TEST_F(ADIOSDefineVariableTest, DefineJoinedArrayTooManyJoinedDims) // Define ADIOS joined array std::size_t n = 50; - EXPECT_THROW(io.DefineVariable( - "joinedarray", {n, adios2::JoinedDim, adios2::JoinedDim}, - {}, {n, 50, 30}), + EXPECT_THROW(io.DefineVariable("joinedarray", {n, adios2::JoinedDim, adios2::JoinedDim}, + {}, {n, 50, 30}), std::invalid_argument); } @@ -402,18 +371,18 @@ TEST_F(ADIOSDefineVariableTest, DefineJoinedArrayInvalidStart) std::size_t n = 10; std::size_t WrongValue = 1; // Start must be empty or full zero array - EXPECT_THROW(io.DefineVariable("joinedarray", {adios2::JoinedDim, 50}, - {0, WrongValue}, {n, 50}), - std::invalid_argument); + EXPECT_THROW( + io.DefineVariable("joinedarray", {adios2::JoinedDim, 50}, {0, WrongValue}, {n, 50}), + std::invalid_argument); } TEST_F(ADIOSDefineVariableTest, DefineString) { // Define ADIOS local array but try to add offsets const std::size_t n = 50; - EXPECT_THROW(io.DefineVariable( - "invalidString1", {}, {50, n / 2, 0}, {10, n / 2, 30}), - std::invalid_argument); + EXPECT_THROW( + io.DefineVariable("invalidString1", {}, {50, n / 2, 0}, {10, n / 2, 30}), + std::invalid_argument); EXPECT_THROW(io.DefineVariable("invalidString2", {}, {}, {1}), std::invalid_argument); @@ -670,8 +639,7 @@ TEST_F(ADIOSDefineVariableTest, DefineStructVariable) struct1.AddField("a", offsetof(def1, a), adios2::DataType::Int8); struct1.AddField("b", offsetof(def1, b), adios2::DataType::Int32, 5); struct1.Freeze(); - EXPECT_THROW(struct1.AddField("c", 0, adios2::DataType::Int32), - std::runtime_error); + EXPECT_THROW(struct1.AddField("c", 0, adios2::DataType::Int32), std::runtime_error); typedef struct def2 { @@ -683,11 +651,9 @@ TEST_F(ADIOSDefineVariableTest, DefineStructVariable) struct2.AddField("a", offsetof(def2, a), adios2::DataType::Int8); struct2.AddField("b", offsetof(def2, b), adios2::DataType::Int32, 5); struct2.AddField("c", 24, adios2::DataType::Int32); - EXPECT_THROW(struct2.AddField("c", 27, adios2::DataType::Int32), - std::runtime_error); + EXPECT_THROW(struct2.AddField("c", 27, adios2::DataType::Int32), std::runtime_error); - auto structVar = - io.DefineStructVariable("particle", struct1, shape, start, count); + auto structVar = io.DefineStructVariable("particle", struct1, shape, start, count); EXPECT_EQ(structVar.Shape().size(), 1); EXPECT_EQ(structVar.Start().size(), 1); diff --git a/testing/adios2/interface/TestADIOSInterface.cpp b/testing/adios2/interface/TestADIOSInterface.cpp index ceaf41409b..a7f628c76f 100644 --- a/testing/adios2/interface/TestADIOSInterface.cpp +++ b/testing/adios2/interface/TestADIOSInterface.cpp @@ -26,8 +26,7 @@ TEST(ADIOSInterface, MPICommRemoved) TEST(ADIOSInterface, BADConfigFile) { - EXPECT_THROW(adios2::ADIOS adios("notthere.xml"); - adios2::IO io = adios.DeclareIO("TestIO"); + EXPECT_THROW(adios2::ADIOS adios("notthere.xml"); adios2::IO io = adios.DeclareIO("TestIO"); io.Open("test.bp", adios2::Mode::Write);, std::logic_error); } @@ -84,8 +83,7 @@ TEST_F(ADIOS2_CXX11_API, ToString) "ReadMultiplexPattern::OpenAllSteps"); EXPECT_EQ(ToString(adios2::StreamOpenMode::Wait), "StreamOpenMode::Wait"); - EXPECT_EQ(ToString(adios2::StreamOpenMode::NoWait), - "StreamOpenMode::NoWait"); + EXPECT_EQ(ToString(adios2::StreamOpenMode::NoWait), "StreamOpenMode::NoWait"); EXPECT_EQ(ToString(adios2::ReadMode::NonBlocking), "ReadMode::NonBlocking"); EXPECT_EQ(ToString(adios2::ReadMode::Blocking), "ReadMode::Blocking"); @@ -96,24 +94,18 @@ TEST_F(ADIOS2_CXX11_API, ToString) EXPECT_EQ(ToString(adios2::StepStatus::OK), "StepStatus::OK"); EXPECT_EQ(ToString(adios2::StepStatus::NotReady), "StepStatus::NotReady"); - EXPECT_EQ(ToString(adios2::StepStatus::EndOfStream), - "StepStatus::EndOfStream"); - EXPECT_EQ(ToString(adios2::StepStatus::OtherError), - "StepStatus::OtherError"); - - EXPECT_EQ(ToString(adios2::TimeUnit::Microseconds), - "TimeUnit::Microseconds"); - EXPECT_EQ(ToString(adios2::TimeUnit::Milliseconds), - "TimeUnit::Milliseconds"); + EXPECT_EQ(ToString(adios2::StepStatus::EndOfStream), "StepStatus::EndOfStream"); + EXPECT_EQ(ToString(adios2::StepStatus::OtherError), "StepStatus::OtherError"); + + EXPECT_EQ(ToString(adios2::TimeUnit::Microseconds), "TimeUnit::Microseconds"); + EXPECT_EQ(ToString(adios2::TimeUnit::Milliseconds), "TimeUnit::Milliseconds"); EXPECT_EQ(ToString(adios2::TimeUnit::Seconds), "TimeUnit::Seconds"); EXPECT_EQ(ToString(adios2::TimeUnit::Minutes), "TimeUnit::Minutes"); EXPECT_EQ(ToString(adios2::TimeUnit::Hours), "TimeUnit::Hours"); - EXPECT_EQ(ToString(adios2::SelectionType::BoundingBox), - "SelectionType::BoundingBox"); + EXPECT_EQ(ToString(adios2::SelectionType::BoundingBox), "SelectionType::BoundingBox"); EXPECT_EQ(ToString(adios2::SelectionType::Points), "SelectionType::Points"); - EXPECT_EQ(ToString(adios2::SelectionType::WriteBlock), - "SelectionType::WriteBlock"); + EXPECT_EQ(ToString(adios2::SelectionType::WriteBlock), "SelectionType::WriteBlock"); EXPECT_EQ(ToString(adios2::SelectionType::Auto), "SelectionType::Auto"); } @@ -130,8 +122,7 @@ TEST_F(ADIOS2_CXX11_API, APIToString) auto engine = io.Open("test.bp", adios2::Mode::Write); - EXPECT_EQ(ToString(engine), - "Engine(Name: \"test.bp\", Type: \"BP5Writer\")"); + EXPECT_EQ(ToString(engine), "Engine(Name: \"test.bp\", Type: \"BP5Writer\")"); } TEST_F(ADIOS2_CXX11_API, operatorLL) @@ -238,11 +229,10 @@ struct CaseMultiBlock static const adios2::Mode PutMode = _PutMode; }; -using MultiBlockTypes = - ::testing::Types, - CaseMultiBlock, - CaseMultiBlock, - CaseMultiBlock>; +using MultiBlockTypes = ::testing::Types, + CaseMultiBlock, + CaseMultiBlock, + CaseMultiBlock>; template class ADIOS2_CXX11_API_MultiBlock : public ADIOS2_CXX11_API_IO diff --git a/testing/adios2/interface/TestADIOSInterfaceWrite.cpp b/testing/adios2/interface/TestADIOSInterfaceWrite.cpp index 60c4e3d1ec..c17d7c57ff 100644 --- a/testing/adios2/interface/TestADIOSInterfaceWrite.cpp +++ b/testing/adios2/interface/TestADIOSInterfaceWrite.cpp @@ -11,10 +11,7 @@ class ADIOSInterfaceWriteTest : public ::testing::Test { public: #if ADIOS2_USE_MPI - ADIOSInterfaceWriteTest() - : adios(MPI_COMM_SELF), io(adios.DeclareIO("TestIO")) - { - } + ADIOSInterfaceWriteTest() : adios(MPI_COMM_SELF), io(adios.DeclareIO("TestIO")) {} #else ADIOSInterfaceWriteTest() : adios(), io(adios.DeclareIO("TestIO")) {} #endif @@ -44,12 +41,10 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_int8_t_1x10) auto var_int8_t = io.DefineVariable(name, {}, {}, adios2::Dims{10}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW(auto foo = - io.DefineVariable(name, {}, {}, adios2::Dims{10}); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{10}); (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct @@ -73,16 +68,13 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_int16_t_1x10) // Define ADIOS variables for each type - auto var_int16_t = - io.DefineVariable(name, {}, {}, adios2::Dims{10}); + auto var_int16_t = io.DefineVariable(name, {}, {}, adios2::Dims{10}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW(auto foo = - io.DefineVariable(name, {}, {}, adios2::Dims{10}); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{10}); (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct @@ -106,16 +98,13 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_int32_t_1x10) // Define ADIOS variables for each type - auto var_int32_t = - io.DefineVariable(name, {}, {}, adios2::Dims{10}); + auto var_int32_t = io.DefineVariable(name, {}, {}, adios2::Dims{10}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW(auto foo = - io.DefineVariable(name, {}, {}, adios2::Dims{10}); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{10}); (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct @@ -140,16 +129,13 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_int64_t_1x10) // Define ADIOS variables for each type - auto var_int64_t = - io.DefineVariable(name, {}, {}, adios2::Dims{10}); + auto var_int64_t = io.DefineVariable(name, {}, {}, adios2::Dims{10}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW(auto foo = - io.DefineVariable(name, {}, {}, adios2::Dims{10}); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{10}); (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct @@ -175,16 +161,13 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_uint8_t_1x10) // Define ADIOS variables for each type - auto var_uint8_t = - io.DefineVariable(name, {}, {}, adios2::Dims{10}); + auto var_uint8_t = io.DefineVariable(name, {}, {}, adios2::Dims{10}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW(auto foo = - io.DefineVariable(name, {}, {}, adios2::Dims{10}); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{10}); (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct @@ -209,17 +192,14 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_uint16_t_1x10) // Define ADIOS variables for each type - auto var_uint16_t = - io.DefineVariable(name, {}, {}, adios2::Dims{10}); + auto var_uint16_t = io.DefineVariable(name, {}, {}, adios2::Dims{10}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW( - auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{10}); - (void)foo, std::invalid_argument); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{10}); + (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct ASSERT_EQ(var_uint16_t.Shape().size(), 0); @@ -243,17 +223,14 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_uint32_t_1x10) // Define ADIOS variables for each type - auto var_uint32_t = - io.DefineVariable(name, {}, {}, adios2::Dims{10}); + auto var_uint32_t = io.DefineVariable(name, {}, {}, adios2::Dims{10}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW( - auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{10}); - (void)foo, std::invalid_argument); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{10}); + (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct ASSERT_EQ(var_uint32_t.Shape().size(), 0); @@ -277,17 +254,14 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_uint64_t_1x10) // Define ADIOS variables for each type - auto var_uint64_t = - io.DefineVariable(name, {}, {}, adios2::Dims{10}); + auto var_uint64_t = io.DefineVariable(name, {}, {}, adios2::Dims{10}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW( - auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{10}); - (void)foo, std::invalid_argument); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{10}); + (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct ASSERT_EQ(var_uint64_t.Shape().size(), 0); @@ -315,17 +289,14 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_int8_t_2x5) // Define ADIOS variables for each type - auto var_int8_t = - io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); + auto var_int8_t = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW( - auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); - (void)foo, std::invalid_argument); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); + (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct ASSERT_EQ(var_int8_t.Shape().size(), 0); @@ -350,17 +321,14 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_int16_t_2x5) // Define ADIOS variables for each type - auto var_int16_t = - io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); + auto var_int16_t = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW( - auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); - (void)foo, std::invalid_argument); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); + (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct ASSERT_EQ(var_int16_t.Shape().size(), 0); @@ -385,17 +353,14 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_int32_t_2x5) // Define ADIOS variables for each type - auto var_int32_t = - io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); + auto var_int32_t = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW( - auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); - (void)foo, std::invalid_argument); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); + (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct ASSERT_EQ(var_int32_t.Shape().size(), 0); @@ -420,17 +385,14 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_int64_t_2x5) // Define ADIOS variables for each type - auto var_int64_t = - io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); + auto var_int64_t = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW( - auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); - (void)foo, std::invalid_argument); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); + (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct ASSERT_EQ(var_int64_t.Shape().size(), 0); @@ -456,17 +418,14 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_uint8_t_2x5) // Define ADIOS variables for each type - auto var_uint8_t = - io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); + auto var_uint8_t = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW( - auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); - (void)foo, std::invalid_argument); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); + (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct ASSERT_EQ(var_uint8_t.Shape().size(), 0); @@ -491,16 +450,13 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_uint16_t_2x5) // Define ADIOS variables for each type - auto var_uint16_t = - io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); + auto var_uint16_t = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, - adios2::Dims{2, 5}); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct @@ -526,16 +482,13 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_uint32_t_2x5) // Define ADIOS variables for each type - auto var_uint32_t = - io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); + auto var_uint32_t = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, - adios2::Dims{2, 5}); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct @@ -561,16 +514,13 @@ TEST_F(ADIOSInterfaceWriteTest, DefineVar_uint64_t_2x5) // Define ADIOS variables for each type - auto var_uint64_t = - io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); + auto var_uint64_t = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); // Verify the return type is as expected - ::testing::StaticAssertTypeEq>(); + ::testing::StaticAssertTypeEq>(); // Verify exceptions are thrown upon duplicate variable names - EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, - adios2::Dims{2, 5}); + EXPECT_THROW(auto foo = io.DefineVariable(name, {}, {}, adios2::Dims{2, 5}); (void)foo, std::invalid_argument); // Verify the dimensions, name, and type are correct @@ -591,16 +541,13 @@ TEST_F(ADIOSInterfaceWriteTest, Exceptions) adios2::Operator invalidOp = adios.InquireOperator("InvalidOp"); EXPECT_FALSE(invalidOp); EXPECT_THROW(adios.AtIO("IOnull"), std::invalid_argument); - EXPECT_THROW(adios.DefineOperator("WrongOp", "UnsupportedType"), - std::invalid_argument); + EXPECT_THROW(adios.DefineOperator("WrongOp", "UnsupportedType"), std::invalid_argument); #ifdef ADIOS2_HAVE_BZIP2 EXPECT_NO_THROW(adios.DefineOperator("bzip2Op", "bzip2")); - EXPECT_THROW(adios.DefineOperator("bzip2Op", "bzip2"), - std::invalid_argument); + EXPECT_THROW(adios.DefineOperator("bzip2Op", "bzip2"), std::invalid_argument); #else - EXPECT_THROW(adios.DefineOperator("bzip2Op", "bzip2"), - std::invalid_argument); + EXPECT_THROW(adios.DefineOperator("bzip2Op", "bzip2"), std::invalid_argument); #endif #ifdef ADIOS2_HAVE_ZFP diff --git a/testing/adios2/interface/TestADIOSSelection.cpp b/testing/adios2/interface/TestADIOSSelection.cpp index 8685eb1035..7b833be772 100644 --- a/testing/adios2/interface/TestADIOSSelection.cpp +++ b/testing/adios2/interface/TestADIOSSelection.cpp @@ -168,8 +168,7 @@ TEST(MultiArray, Access) { for (size_t m = 0; m < dims[3]; m++) { - EXPECT_EQ((arr[{i, j, k, m}]), - i * 1000. + j * 100. + k * 10. + m); + EXPECT_EQ((arr[{i, j, k, m}]), i * 1000. + j * 100. + k * 10. + m); } } } @@ -228,8 +227,7 @@ class ADIOS2_CXX11_API_Selection : public ADIOS2_CXX11_API_IO using MultiIndex = MultiArrayT::Index; ADIOS2_CXX11_API_Selection() - : m_IOWriter(m_Ad.DeclareIO("CXX11_API_Writer")), - m_IOReader(m_Ad.DeclareIO("CXX11_API_Reader")) + : m_IOWriter(m_Ad.DeclareIO("CXX11_API_Writer")), m_IOReader(m_Ad.DeclareIO("CXX11_API_Reader")) { } @@ -250,8 +248,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, SelectionNone) // write m_IOWriter.SetEngine(engine); - auto writer = - m_IOWriter.Open("test_selection_none.bp", adios2::Mode::Write); + auto writer = m_IOWriter.Open("test_selection_none.bp", adios2::Mode::Write); auto var = m_IOWriter.DefineVariable("var", {3, 4}); var.SetSelection({{0, 0}, {3, 4}}); writer.Put(var, arr.data()); @@ -283,8 +280,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, SelectionWrite) // write m_IOWriter.SetEngine(engine); - auto writer = - m_IOWriter.Open("test_selection_write.bp", adios2::Mode::Write); + auto writer = m_IOWriter.Open("test_selection_write.bp", adios2::Mode::Write); auto var = m_IOWriter.DefineVariable("var", {3, 4}); var.SetSelection({{0, 0}, {3, 2}}); writer.Put(var, arr.data()); @@ -292,8 +288,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, SelectionWrite) // read back auto arr_read = MultiArrayT(ref.dims()); - auto engine = - m_IOReader.Open("test_selection_write.bp", adios2::Mode::Read); + auto engine = m_IOReader.Open("test_selection_write.bp", adios2::Mode::Read); engine.BeginStep(); var = m_IOReader.InquireVariable("var"); var.SetSelection({{0, 0}, {3, 4}}); @@ -317,8 +312,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, SelectionWriteStart) // write m_IOWriter.SetEngine(engine); - auto writer = - m_IOWriter.Open("test_selection_write_start.bp", adios2::Mode::Write); + auto writer = m_IOWriter.Open("test_selection_write_start.bp", adios2::Mode::Write); auto var = m_IOWriter.DefineVariable("var", {3, 4}); var.SetSelection({{0, 2}, {3, 2}}); writer.Put(var, arr.data()); @@ -326,8 +320,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, SelectionWriteStart) // read back auto arr_read = MultiArrayT(ref.dims()); - auto engine = - m_IOReader.Open("test_selection_write_start.bp", adios2::Mode::Read); + auto engine = m_IOReader.Open("test_selection_write_start.bp", adios2::Mode::Read); engine.BeginStep(); var = m_IOReader.InquireVariable("var"); var.SetSelection({{0, 0}, {3, 4}}); @@ -350,8 +343,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, SelectionRead) // clang-format on m_IOWriter.SetEngine(engine); - auto writer = - m_IOWriter.Open("test_selection_read.bp", adios2::Mode::Write); + auto writer = m_IOWriter.Open("test_selection_read.bp", adios2::Mode::Write); auto var = m_IOWriter.DefineVariable("var", {3, 4}); var.SetSelection({{0, 0}, {3, 4}}); writer.Put(var, arr.data()); @@ -383,8 +375,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, SelectionReadStart) // write m_IOWriter.SetEngine(engine); - auto writer = - m_IOWriter.Open("test_selection_read_start.bp", adios2::Mode::Write); + auto writer = m_IOWriter.Open("test_selection_read_start.bp", adios2::Mode::Write); auto var = m_IOWriter.DefineVariable("var", {3, 4}); var.SetSelection({{0, 0}, {3, 4}}); writer.Put(var, arr.data()); @@ -392,8 +383,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, SelectionReadStart) // read back auto arr_read = MultiArrayT(ref.dims()); - auto engine = - m_IOReader.Open("test_selection_read_start.bp", adios2::Mode::Read); + auto engine = m_IOReader.Open("test_selection_read_start.bp", adios2::Mode::Read); engine.BeginStep(); var = m_IOReader.InquireVariable("var"); var.SetSelection({{0, 2}, {3, 2}}); @@ -419,8 +409,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, MemorySelectionNone) // write m_IOWriter.SetEngine(engine); - auto writer = - m_IOWriter.Open("test_mem_selection_none.bp", adios2::Mode::Write); + auto writer = m_IOWriter.Open("test_mem_selection_none.bp", adios2::Mode::Write); auto var = m_IOWriter.DefineVariable("var", {3, 4}); var.SetSelection({{0, 0}, {3, 4}}); var.SetMemorySelection({{1, 1}, {5, 6}}); @@ -429,8 +418,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, MemorySelectionNone) // read back auto arr_read = MultiArrayT(ref.dims()); - auto engine = - m_IOReader.Open("test_mem_selection_none.bp", adios2::Mode::Read); + auto engine = m_IOReader.Open("test_mem_selection_none.bp", adios2::Mode::Read); engine.BeginStep(); var = m_IOReader.InquireVariable("var"); var.SetSelection({{0, 0}, {3, 4}}); @@ -456,8 +444,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, MemorySelectionWrite) // write m_IOWriter.SetEngine(engine); - auto writer = - m_IOWriter.Open("test_mem_selection_write.bp", adios2::Mode::Write); + auto writer = m_IOWriter.Open("test_mem_selection_write.bp", adios2::Mode::Write); auto var = m_IOWriter.DefineVariable("var", {3, 4}); var.SetSelection({{0, 0}, {3, 2}}); var.SetMemorySelection({{1, 1}, {5, 6}}); @@ -466,8 +453,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, MemorySelectionWrite) // read back auto arr_read = MultiArrayT(ref.dims()); - auto engine = - m_IOReader.Open("test_mem_selection_write.bp", adios2::Mode::Read); + auto engine = m_IOReader.Open("test_mem_selection_write.bp", adios2::Mode::Read); engine.BeginStep(); var = m_IOReader.InquireVariable("var"); var.SetSelection({{0, 0}, {3, 2}}); @@ -493,8 +479,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, MemorySelectionWriteStart) // write m_IOWriter.SetEngine(engine); - auto writer = m_IOWriter.Open("test_mem_selection_write_start.bp", - adios2::Mode::Write); + auto writer = m_IOWriter.Open("test_mem_selection_write_start.bp", adios2::Mode::Write); auto var = m_IOWriter.DefineVariable("var", {3, 4}); var.SetSelection({{0, 0}, {3, 2}}); var.SetMemorySelection({{1, 3}, {5, 6}}); @@ -503,8 +488,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, MemorySelectionWriteStart) // read back auto arr_read = MultiArrayT(ref.dims()); - auto engine = m_IOReader.Open("test_mem_selection_write_start.bp", - adios2::Mode::Read); + auto engine = m_IOReader.Open("test_mem_selection_write_start.bp", adios2::Mode::Read); engine.BeginStep(); var = m_IOReader.InquireVariable("var"); var.SetSelection({{0, 0}, {3, 2}}); @@ -529,8 +513,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, MemorySelectionRead) // clang-format on m_IOWriter.SetEngine(engine); - auto writer = - m_IOWriter.Open("test_mem_selection_read.bp", adios2::Mode::Write); + auto writer = m_IOWriter.Open("test_mem_selection_read.bp", adios2::Mode::Write); auto var = m_IOWriter.DefineVariable("var", {3, 4}); var.SetSelection({{0, 0}, {3, 4}}); writer.Put(var, arr.data()); @@ -538,8 +521,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, MemorySelectionRead) // read back auto arr_read = MultiArrayT(ref.dims()); - auto engine = - m_IOReader.Open("test_mem_selection_read.bp", adios2::Mode::Read); + auto engine = m_IOReader.Open("test_mem_selection_read.bp", adios2::Mode::Read); engine.BeginStep(); var = m_IOReader.InquireVariable("var"); var.SetSelection({{0, 0}, {3, 2}}); @@ -565,8 +547,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, MemorySelectionReadStart) // clang-format on m_IOWriter.SetEngine(engine); - auto writer = m_IOWriter.Open("test_mem_selection_read_start.bp", - adios2::Mode::Write); + auto writer = m_IOWriter.Open("test_mem_selection_read_start.bp", adios2::Mode::Write); auto var = m_IOWriter.DefineVariable("var", {3, 4}); var.SetSelection({{0, 0}, {3, 4}}); writer.Put(var, arr.data()); @@ -574,8 +555,8 @@ TEST_F(ADIOS2_CXX11_API_Selection, MemorySelectionReadStart) // read back auto arr_read = MultiArrayT(ref.dims()); - auto engine = m_IOReader.Open("test_mem_selection_read_start.bp", - adios2::Mode::ReadRandomAccess); + auto engine = + m_IOReader.Open("test_mem_selection_read_start.bp", adios2::Mode::ReadRandomAccess); var = m_IOReader.InquireVariable("var"); var.SetSelection({{0, 2}, {3, 2}}); var.SetMemorySelection({{1, 1}, {5, 4}}); @@ -601,8 +582,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, MemorySelectionComplex) // clang-format on m_IOWriter.SetEngine(engine); - auto writer = - m_IOWriter.Open("test_mem_selection_complex.bp", adios2::Mode::Write); + auto writer = m_IOWriter.Open("test_mem_selection_complex.bp", adios2::Mode::Write); auto var = m_IOWriter.DefineVariable("var", {4, 4}); // write in 4 quarters var.SetSelection({{0, 0}, {2, 2}}); @@ -621,8 +601,7 @@ TEST_F(ADIOS2_CXX11_API_Selection, MemorySelectionComplex) // read back center block, with bits from every block written auto arr_read = MultiArrayT(ref.dims()); - auto engine = m_IOReader.Open("test_mem_selection_complex.bp", - adios2::Mode::ReadRandomAccess); + auto engine = m_IOReader.Open("test_mem_selection_complex.bp", adios2::Mode::ReadRandomAccess); var = m_IOReader.InquireVariable("var"); var.SetSelection({{1, 1}, {2, 2}}); var.SetMemorySelection({{1, 1}, {4, 4}}); diff --git a/testing/adios2/performance/manyvars/PerfManyVars.c b/testing/adios2/performance/manyvars/PerfManyVars.c index b47f916e33..c9728c211b 100644 --- a/testing/adios2/performance/manyvars/PerfManyVars.c +++ b/testing/adios2/performance/manyvars/PerfManyVars.c @@ -29,13 +29,13 @@ #include "dmalloc.h" #endif -#define log(...) \ - fprintf(stderr, "[rank=%3.3d, line %d]: ", rank, __LINE__); \ - fprintf(stderr, __VA_ARGS__); \ +#define log(...) \ + fprintf(stderr, "[rank=%3.3d, line %d]: ", rank, __LINE__); \ + fprintf(stderr, __VA_ARGS__); \ fflush(stderr); -#define printE(...) \ - fprintf(stderr, "[rank=%3.3d, line %d]: ERROR: ", rank, __LINE__); \ - fprintf(stderr, __VA_ARGS__); \ +#define printE(...) \ + fprintf(stderr, "[rank=%3.3d, line %d]: ERROR: ", rank, __LINE__); \ + fprintf(stderr, __VA_ARGS__); \ fflush(stderr); int NVARS = 1; @@ -264,9 +264,8 @@ void define_vars() * Offsets will change at writing for each block. */ for (i = 0; i < NVARS; i++) { - varW[i] = adios2_define_variable(ioW, varnames[i], adios2_type_int32_t, - 2, shape, start, count, - adios2_constant_dims_false); + varW[i] = adios2_define_variable(ioW, varnames[i], adios2_type_int32_t, 2, shape, start, + count, adios2_constant_dims_false); } } @@ -304,51 +303,49 @@ int write_file(int step) return 0; } -#define CHECK_VARINFO(VARNAME, NDIM, NSTEPS) \ - vi = adios2_inquire_variable(ioR, VARNAME); \ - if (vi == NULL) \ - { \ - printE("No such variable: %s\n", VARNAME); \ - err = 101; \ - goto endread; \ - } \ - size_t ndims; \ - adios2_variable_ndims(&ndims, vi); \ - \ - if (ndims != NDIM) \ - { \ - printE("Variable %s has %zu dimensions, but expected %u\n", VARNAME, \ - ndims, NDIM); \ - err = 102; \ - goto endread; \ - } \ - size_t steps; \ - adios2_variable_steps(&steps, vi); \ - if (steps != NSTEPS) \ - { \ - printE("Variable %s has %zu steps, but expected %u\n", VARNAME, steps, \ - NSTEPS); \ - err = 103; \ - /*goto endread; */ \ +#define CHECK_VARINFO(VARNAME, NDIM, NSTEPS) \ + vi = adios2_inquire_variable(ioR, VARNAME); \ + if (vi == NULL) \ + { \ + printE("No such variable: %s\n", VARNAME); \ + err = 101; \ + goto endread; \ + } \ + size_t ndims; \ + adios2_variable_ndims(&ndims, vi); \ + \ + if (ndims != NDIM) \ + { \ + printE("Variable %s has %zu dimensions, but expected %u\n", VARNAME, ndims, NDIM); \ + err = 102; \ + goto endread; \ + } \ + size_t steps; \ + adios2_variable_steps(&steps, vi); \ + if (steps != NSTEPS) \ + { \ + printE("Variable %s has %zu steps, but expected %u\n", VARNAME, steps, NSTEPS); \ + err = 103; \ + /*goto endread; */ \ } -#define CHECK_SCALAR(VARNAME, VAR, VALUE, STEP) \ - if (VAR != VALUE) \ - { \ - printE(#VARNAME " step %d: wrote %d but read %d\n", STEP, VALUE, VAR); \ - err = 104; \ - /*goto endread;*/ \ +#define CHECK_SCALAR(VARNAME, VAR, VALUE, STEP) \ + if (VAR != VALUE) \ + { \ + printE(#VARNAME " step %d: wrote %d but read %d\n", STEP, VALUE, VAR); \ + err = 104; \ + /*goto endread;*/ \ } -#define CHECK_ARRAY(VARNAME, A, N, VALUE, STEP, BLOCK, i) \ - for (i = 0; i < N; i++) \ - if (A[i] != VALUE) \ - { \ - printE("%s[%d] step %d block %d: wrote %d but read %d\n", VARNAME, \ - i, STEP, BLOCK, VALUE, A[i]); \ - err = 104; \ - /*goto endread;*/ \ - break; \ +#define CHECK_ARRAY(VARNAME, A, N, VALUE, STEP, BLOCK, i) \ + for (i = 0; i < N; i++) \ + if (A[i] != VALUE) \ + { \ + printE("%s[%d] step %d block %d: wrote %d but read %d\n", VARNAME, i, STEP, BLOCK, \ + VALUE, A[i]); \ + err = 104; \ + /*goto endread;*/ \ + break; \ } void reset_readvars() @@ -421,19 +418,16 @@ int read_file() for (i = 0; i < NVARS; i++) { tsb = MPI_Wtime(); - adios2_variable *varH = - adios2_inquire_variable(ioR, varnames[i]); + adios2_variable *varH = adios2_inquire_variable(ioR, varnames[i]); adios2_set_selection(varH, 2, start, count); adios2_get(engineR, varH, r2, adios2_mode_sync); ts += MPI_Wtime() - tsb; - CHECK_ARRAY(varnames[i], r2, ldim1 * ldim2, v, step, block, - iMacro) + CHECK_ARRAY(varnames[i], r2, ldim1 * ldim2, v, step, block, iMacro) } } else { - printf("-- ERROR: Could not get Step %d, status = %d\n", i, - status); + printf("-- ERROR: Could not get Step %d, status = %d\n", i, status); } } adios2_end_step(engineR); diff --git a/testing/adios2/performance/manyvars/TestManyVars.cpp b/testing/adios2/performance/manyvars/TestManyVars.cpp index 845487b580..f17cedd5ec 100644 --- a/testing/adios2/performance/manyvars/TestManyVars.cpp +++ b/testing/adios2/performance/manyvars/TestManyVars.cpp @@ -41,8 +41,7 @@ struct RunParams size_t nvars; size_t nblocks; size_t nsteps; - RunParams(size_t nv, size_t nb, size_t ns) - : nvars{nv}, nblocks{nb}, nsteps{ns} {}; + RunParams(size_t nv, size_t nb, size_t ns) : nvars{nv}, nblocks{nb}, nsteps{ns} {}; }; /* This function is executed by INSTANTIATE_TEST_SUITE_P @@ -72,53 +71,51 @@ std::vector CreateRunParams() return params; } -#define log(...) \ - fprintf(stderr, "[rank=%3.3d, line %d]: ", rank, __LINE__); \ - fprintf(stderr, __VA_ARGS__); \ +#define log(...) \ + fprintf(stderr, "[rank=%3.3d, line %d]: ", rank, __LINE__); \ + fprintf(stderr, __VA_ARGS__); \ fflush(stderr); -#define printE(...) \ - fprintf(stderr, "[rank=%3.3d, line %d]: ERROR: ", rank, __LINE__); \ - fprintf(stderr, __VA_ARGS__); \ +#define printE(...) \ + fprintf(stderr, "[rank=%3.3d, line %d]: ERROR: ", rank, __LINE__); \ + fprintf(stderr, __VA_ARGS__); \ fflush(stderr); #define VALUE(rank, step, block) (step * 10000 + 10 * rank + block) -#define CHECK_VARINFO(VARNAME, NDIM, NSTEPS) \ - vi = adios2_inquire_variable(ioR, VARNAME); \ - if (vi == NULL) \ - { \ - printE("No such variable: %s\n", VARNAME); \ - err = 101; \ - goto endread; \ - } \ - size_t ndims; \ - adios2_variable_ndims(&ndims, vi); \ - if (ndims != NDIM) \ - { \ - printE("Variable %s has %zu dimensions, but expected %u\n", VARNAME, \ - ndims, NDIM); \ - err = 102; \ - goto endread; \ +#define CHECK_VARINFO(VARNAME, NDIM, NSTEPS) \ + vi = adios2_inquire_variable(ioR, VARNAME); \ + if (vi == NULL) \ + { \ + printE("No such variable: %s\n", VARNAME); \ + err = 101; \ + goto endread; \ + } \ + size_t ndims; \ + adios2_variable_ndims(&ndims, vi); \ + if (ndims != NDIM) \ + { \ + printE("Variable %s has %zu dimensions, but expected %u\n", VARNAME, ndims, NDIM); \ + err = 102; \ + goto endread; \ } -#define CHECK_SCALAR(VARNAME, VAR, VALUE, STEP) \ - if (VAR != VALUE) \ - { \ - printE(#VARNAME " step %zu: wrote %zu but read %zu\n", STEP, VALUE, \ - VAR); \ - err = 104; \ - /*goto endread;*/ \ +#define CHECK_SCALAR(VARNAME, VAR, VALUE, STEP) \ + if (VAR != VALUE) \ + { \ + printE(#VARNAME " step %zu: wrote %zu but read %zu\n", STEP, VALUE, VAR); \ + err = 104; \ + /*goto endread;*/ \ } -#define CHECK_ARRAY(VARNAME, A, N, VALUE, STEP, BLOCK) \ - for (int i = 0; i < static_cast(N); i++) \ - if (A[i] != VALUE) \ - { \ - printE("%s[%d] step %d block %zu: wrote %d but read %d\n", \ - VARNAME, i, STEP, BLOCK, VALUE, A[i]); \ - err = 104; \ - /*goto endread;*/ \ - break; \ +#define CHECK_ARRAY(VARNAME, A, N, VALUE, STEP, BLOCK) \ + for (int i = 0; i < static_cast(N); i++) \ + if (A[i] != VALUE) \ + { \ + printE("%s[%d] step %d block %zu: wrote %d but read %d\n", VARNAME, i, STEP, BLOCK, \ + VALUE, A[i]); \ + err = 104; \ + /*goto endread;*/ \ + break; \ } #if ADIOS2_USE_MPI @@ -238,8 +235,8 @@ class TestManyVars : public ::testing::TestWithParam NBLOCKS = p.nblocks; NSTEPS = p.nsteps; REDEFINE = redefineVars; - snprintf(FILENAME, sizeof(FILENAME), "manyVars.%zu_%zu_%zu%s.bp", NVARS, - NBLOCKS, NSTEPS, REDEFINE ? "_redefine" : ""); + snprintf(FILENAME, sizeof(FILENAME), "manyVars.%zu_%zu_%zu%s.bp", NVARS, NBLOCKS, NSTEPS, + REDEFINE ? "_redefine" : ""); alloc_vars(); #if ADIOS2_USE_MPI @@ -254,8 +251,7 @@ class TestManyVars : public ::testing::TestWithParam if (rank == 0) { - log("Test %zu Variables, %zu Blocks, %zu Steps\n", NVARS, NBLOCKS, - NSTEPS); + log("Test %zu Variables, %zu Blocks, %zu Steps\n", NVARS, NBLOCKS, NSTEPS); } engineW = adios2_open(ioW, FILENAME, adios2_mode_write); @@ -303,9 +299,8 @@ class TestManyVars : public ::testing::TestWithParam * Offsets will change at writing for each block. */ for (size_t i = 0; i < NVARS; i++) { - varW[i] = adios2_define_variable( - ioW, varnames[i], adios2_type_int32_t, 2, shape, start, count, - adios2_constant_dims_false); + varW[i] = adios2_define_variable(ioW, varnames[i], adios2_type_int32_t, 2, shape, start, + count, adios2_constant_dims_false); } } @@ -322,8 +317,7 @@ class TestManyVars : public ::testing::TestWithParam for (size_t block = 0; block < NBLOCKS; block++) { v = VALUE(rank, step, block); - log(" Write block %d, value %d to %s\n", static_cast(block), - v, FILENAME); + log(" Write block %d, value %d to %s\n", static_cast(block), v, FILENAME); set_vars(step, block); size_t start[2] = {offs1, offs2}; for (size_t i = 0; i < NVARS; i++) @@ -339,8 +333,7 @@ class TestManyVars : public ::testing::TestWithParam if (rank == 0) { log(" Write time for step %d was %6.3lf seconds\n", step, - double(std::chrono::duration_cast(te - tb) - .count())); + double(std::chrono::duration_cast(te - tb).count())); } #if ADIOS2_USE_MPI MPI_Barrier(comm); @@ -361,8 +354,7 @@ class TestManyVars : public ::testing::TestWithParam adios2_variable *vi; int err = 0; std::chrono::time_point tb, te; - std::chrono::duration - ts; // time for just scheduling for one step/block + std::chrono::duration ts; // time for just scheduling for one step/block size_t start[2] = {offs1, offs2}; size_t count[2] = {ldim1, ldim2}; @@ -393,8 +385,7 @@ class TestManyVars : public ::testing::TestWithParam if (rank == 0) { log(" Time to check all vars' info: %6.3lf seconds\n", - double(std::chrono::duration_cast(te - tb) - .count())); + double(std::chrono::duration_cast(te - tb).count())); } log(" Check variable content...\n"); @@ -420,20 +411,17 @@ class TestManyVars : public ::testing::TestWithParam for (size_t i = 0; i < NVARS; i++) { auto tsb = std::chrono::high_resolution_clock::now(); - adios2_variable *varH = - adios2_inquire_variable(ioR, varnames[i]); + adios2_variable *varH = adios2_inquire_variable(ioR, varnames[i]); adios2_set_selection(varH, 2, start, count); adios2_get(engineR, varH, r2, adios2_mode_sync); auto tse = std::chrono::high_resolution_clock::now(); ts += tse - tsb; - CHECK_ARRAY(varnames[i], r2, ldim1 * ldim2, v, step, - block) + CHECK_ARRAY(varnames[i], r2, ldim1 * ldim2, v, step, block) } } else { - printf("-- ERROR: Could not get Step %d, status = %d\n", - step, status); + printf("-- ERROR: Could not get Step %d, status = %d\n", step, status); } } adios2_end_step(engineR); @@ -444,8 +432,7 @@ class TestManyVars : public ::testing::TestWithParam if (rank == 0) { log(" Read time for step %d was %6.3lfs\n", step, - double(std::chrono::duration_cast(ts) - .count())); + double(std::chrono::duration_cast(ts).count())); } } @@ -466,8 +453,7 @@ TEST_P(TestManyVars, DontRedefineVars) ASSERT_EQ(err, 0); } -INSTANTIATE_TEST_SUITE_P(NxM, TestManyVars, - ::testing::ValuesIn(CreateRunParams())); +INSTANTIATE_TEST_SUITE_P(NxM, TestManyVars, ::testing::ValuesIn(CreateRunParams())); //****************************************************************************** // main diff --git a/testing/adios2/performance/metadata/PerfMetaData.cpp b/testing/adios2/performance/metadata/PerfMetaData.cpp index 01c50162c6..afd1f4415f 100644 --- a/testing/adios2/performance/metadata/PerfMetaData.cpp +++ b/testing/adios2/performance/metadata/PerfMetaData.cpp @@ -78,8 +78,7 @@ static adios2::Params ParseEngineParams(std::string Input) std::getline(ss2, ParamName, '='); if (!std::getline(ss2, ParamValue, '=')) { - throw std::invalid_argument("Engine parameter \"" + Param + - "\" missing value"); + throw std::invalid_argument("Engine parameter \"" + Param + "\" missing value"); } Ret[Trim(ParamName)] = Trim(ParamValue); } @@ -131,8 +130,7 @@ static void ParseArgs(int argc, char **argv) { std::istringstream ss(argv[2]); if (!(ss >> NumVars)) - std::cerr << "Invalid number for number of variables " - << argv[1] << '\n'; + std::cerr << "Invalid number for number of variables " << argv[1] << '\n'; argv++; argc--; } @@ -140,8 +138,7 @@ static void ParseArgs(int argc, char **argv) { std::istringstream ss(argv[2]); if (!(ss >> NumArrays)) - std::cerr << "Invalid number for number of arrays" << argv[1] - << '\n'; + std::cerr << "Invalid number for number of arrays" << argv[1] << '\n'; argv++; argc--; } @@ -149,8 +146,7 @@ static void ParseArgs(int argc, char **argv) { std::istringstream ss(argv[2]); if (!(ss >> NumAttrs)) - std::cerr << "Invalid number for number of attrs" << argv[1] - << '\n'; + std::cerr << "Invalid number for number of attrs" << argv[1] << '\n'; argv++; argc--; } @@ -158,8 +154,7 @@ static void ParseArgs(int argc, char **argv) { std::istringstream ss(argv[2]); if (!(ss >> NumBlocks)) - std::cerr << "Invalid number for number of blocks" << argv[1] - << '\n'; + std::cerr << "Invalid number for number of blocks" << argv[1] << '\n'; argv++; argc--; } @@ -246,8 +241,7 @@ static void ParseArgs(int argc, char **argv) else { - throw std::invalid_argument("Unknown argument \"" + - std::string(argv[1]) + "\""); + throw std::invalid_argument("Unknown argument \"" + std::string(argv[1]) + "\""); } } argv++; @@ -272,11 +266,9 @@ void DoWriter(adios2::Params writerParams) } #endif if ((mpiRank == 0) && E3sm) - std::cout << "E3SM mode. Full run: 960 Timesteps, at 1344 ranks" - << std::endl; + std::cout << "E3SM mode. Full run: 960 Timesteps, at 1344 ranks" << std::endl; if ((mpiRank == 0) && Warpx) - std::cout << "Warpx mode. Full run: 50 Timesteps, at 3000 ranks" - << std::endl; + std::cout << "Warpx mode. Full run: 50 Timesteps, at 3000 ranks" << std::endl; if ((mpiRank == 0) && ErrorStr) { std::cout << "Unknown arg " << ErrorStr << std::endl; @@ -300,8 +292,7 @@ void DoWriter(adios2::Params writerParams) std::chrono::time_point start, finish; std::vector myFloats = {0, 1, 2, 3, 4, 5, 6, 7, 8, 9}; adios2::Variable *Floats = new adios2::Variable[NumVars]; - adios2::Variable *FloatArrays = - new adios2::Variable[NumArrays]; + adios2::Variable *FloatArrays = new adios2::Variable[NumArrays]; if (mpiRank == 0) { // attributes and globals on rank 0 @@ -321,14 +312,13 @@ void DoWriter(adios2::Params writerParams) std::string varname = "Array" + std::to_string(i); if (NumBlocks == 1) { - FloatArrays[i] = io.DefineVariable( - varname, {(unsigned long)mpiSize}, {(unsigned long)mpiRank}, - {1}, adios2::ConstantDims); + FloatArrays[i] = + io.DefineVariable(varname, {(unsigned long)mpiSize}, + {(unsigned long)mpiRank}, {1}, adios2::ConstantDims); } else { - FloatArrays[i] = io.DefineVariable(varname, {}, {}, {1}, - adios2::ConstantDims); + FloatArrays[i] = io.DefineVariable(varname, {}, {}, {1}, adios2::ConstantDims); } } start = std::chrono::high_resolution_clock::now(); @@ -383,8 +373,7 @@ void DoReader() engineParams["ReaderShortCircuitReads"] = "On"; io.SetParameters(engineParams); adios2::Engine reader = io.Open("MetaDataTest", adios2::Mode::Read); - std::chrono::time_point startTS, - endBeginStep, finishTS; + std::chrono::time_point startTS, endBeginStep, finishTS; std::vector myFloats = {0, 1, 2, 3, 4, 5, 6, 7, 8, 9}; std::this_thread::sleep_for(std::chrono::seconds(ReaderDelay)); std::vector in(1); @@ -465,8 +454,7 @@ void DoReader() // local, go through blocks for (int rank = 0; rank < WriterSize; rank++) { - for (auto blk : - reader.BlocksInfo(Var, reader.CurrentStep())) + for (auto blk : reader.BlocksInfo(Var, reader.CurrentStep())) { Var.SetBlockSelection(blk.BlockID); reader.Get(Var, in.data()); @@ -493,21 +481,17 @@ void DoReader() void DoReaderOutput() { - std::cout << "Metadata Installation Time " << InstallTime.count() - << " seconds." << std::endl; + std::cout << "Metadata Installation Time " << InstallTime.count() << " seconds." << std::endl; - std::cout << "Metadata Traversal Time " << TraversalTime.count() - << " seconds." << std::endl; + std::cout << "Metadata Traversal Time " << TraversalTime.count() << " seconds." << std::endl; std::cout << "Parameters Nsteps=" << NSteps << ", NumArrays=" << NumArrays - << ", NumVArs=" << NumVars << ", NumAttrs=" << NumAttrs - << ", NumBlocks=" << NumBlocks << std::endl; - if ((NumArrays != LastArraySize) || (NumVars != LastVarSize) || - (NumAttrs != LastAttrsSize)) + << ", NumVArs=" << NumVars << ", NumAttrs=" << NumAttrs << ", NumBlocks=" << NumBlocks + << std::endl; + if ((NumArrays != LastArraySize) || (NumVars != LastVarSize) || (NumAttrs != LastAttrsSize)) { std::cout << "Arrays=" << LastArraySize << ", Vars=" << LastVarSize - << ", Attrs=" << LastAttrsSize << ", NumBlocks=" << NumBlocks - << std::endl; + << ", Attrs=" << LastAttrsSize << ", NumBlocks=" << NumBlocks << std::endl; std::cout << "Inconsistency" << std::endl; } } @@ -546,8 +530,7 @@ int main(int argc, char **argv) { DoWriter(engineParams); if (key == 0) - std::cout << "File Writer Time " << elapsed.count() - << " seconds." << std::endl; + std::cout << "File Writer Time " << elapsed.count() << " seconds." << std::endl; } else { @@ -572,21 +555,18 @@ int main(int argc, char **argv) } if ((NumBlocks > 1) && (key == 0)) { - std::cerr - << "Warning, metadata info for FFS not valid for num_blocks > 1" - << std::endl; + std::cerr << "Warning, metadata info for FFS not valid for num_blocks > 1" << std::endl; } // first all writer ranks do Writer calcs with no reader if (key > 0) { - adios2::Params ConsolidationParams = - engineParams; // parsed from command line + adios2::Params ConsolidationParams = engineParams; // parsed from command line ConsolidationParams["RendezvousReaderCount"] = "0"; DoWriter(ConsolidationParams); if (key == 1) { - std::cout << "Metadata Consolidation Time " << elapsed.count() - << " seconds." << std::endl; + std::cout << "Metadata Consolidation Time " << elapsed.count() << " seconds." + << std::endl; } ReaderDelay = (int)elapsed.count() + 5; } diff --git a/testing/adios2/performance/query/TestBPQuery.cpp b/testing/adios2/performance/query/TestBPQuery.cpp index 7aca67b9fd..1ae23c8e87 100644 --- a/testing/adios2/performance/query/TestBPQuery.cpp +++ b/testing/adios2/performance/query/TestBPQuery.cpp @@ -65,12 +65,10 @@ class BPQueryTest : public ::testing::Test public: BPQueryTest() = default; - void WriteFile(const std::string &fname, adios2::ADIOS &adios, - const std::string &engineName); + void WriteFile(const std::string &fname, adios2::ADIOS &adios, const std::string &engineName); void QueryDoubleVar(const std::string &fname, adios2::ADIOS &adios, const std::string &engineName); - void QueryIntVar(const std::string &fname, adios2::ADIOS &adios, - const std::string &engineName); + void QueryIntVar(const std::string &fname, adios2::ADIOS &adios, const std::string &engineName); QueryTestData m_TestData; @@ -177,10 +175,8 @@ void BPQueryTest::WriteFile(const std::string &fname, adios2::ADIOS &adios, const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; - auto var_i32 = - io.DefineVariable("intV", shape, start, count); - auto var_r64 = - io.DefineVariable("doubleV", shape, start, count); + auto var_i32 = io.DefineVariable("intV", shape, start, count); + auto var_r64 = io.DefineVariable("doubleV", shape, start, count); EXPECT_TRUE(var_i32); EXPECT_TRUE(var_r64); } @@ -213,8 +209,7 @@ void BPQueryTest::WriteFile(const std::string &fname, adios2::ADIOS &adios, for (size_t step = 0; step < NSteps; ++step) { // Generate test data for each process uniquely - LoadTestData(m_TestData, static_cast(step), mpiRank, - static_cast(Nx)); + LoadTestData(m_TestData, static_cast(step), mpiRank, static_cast(Nx)); auto var_i32 = io.InquireVariable("intV"); auto var_r64 = io.InquireVariable("doubleV"); diff --git a/testing/adios2/transports/TestFile.cpp b/testing/adios2/transports/TestFile.cpp index dc1b5429c4..ddf1e0ce12 100644 --- a/testing/adios2/transports/TestFile.cpp +++ b/testing/adios2/transports/TestFile.cpp @@ -11,8 +11,7 @@ #include class BufferTest -: public ::testing::TestWithParam< - std::tuple> +: public ::testing::TestWithParam> { }; @@ -23,9 +22,8 @@ TEST_P(BufferTest, WriteRead) const std::string &transportReadLibrary = std::get<2>(GetParam()); const std::string &transportReadBuffer = std::get<3>(GetParam()); - const std::string fname("FileBufferTest_" + transportWriteLibrary + "_" + - transportWriteBuffer + "_" + transportReadLibrary + - "_" + transportReadBuffer + ".bp"); + const std::string fname("FileBufferTest_" + transportWriteLibrary + "_" + transportWriteBuffer + + "_" + transportReadLibrary + "_" + transportReadBuffer + ".bp"); std::array dataOrig; for (size_t i = 0; i < 100; ++i) @@ -76,55 +74,55 @@ TEST_P(BufferTest, WriteRead) } #ifdef __unix__ -INSTANTIATE_TEST_SUITE_P( - TransportTests, BufferTest, - ::testing::Values(std::make_tuple("fstream", "true", "posix", "false"), - std::make_tuple("fstream", "false", "posix", "false"), - std::make_tuple("posix", "false", "stdio", "true"), - std::make_tuple("posix", "false", "stdio", "false"), - std::make_tuple("posix", "false", "fstream", "true"), - std::make_tuple("posix", "false", "fstream", "false"), - std::make_tuple("posix", "false", "posix", "false"), - std::make_tuple("stdio", "true", "posix", "false"), - std::make_tuple("stdio", "false", "posix", "false"), - - std::make_tuple("stdio", "true", "stdio", "true"), - std::make_tuple("stdio", "true", "stdio", "false"), - std::make_tuple("stdio", "false", "stdio", "true"), - std::make_tuple("stdio", "false", "stdio", "false"), - std::make_tuple("stdio", "true", "fstream", "true"), - std::make_tuple("stdio", "true", "fstream", "false"), - std::make_tuple("stdio", "false", "fstream", "true"), - std::make_tuple("stdio", "false", "fstream", "false"), - - std::make_tuple("fstream", "true", "stdio", "true"), - std::make_tuple("fstream", "true", "stdio", "false"), - std::make_tuple("fstream", "false", "stdio", "true"), - std::make_tuple("fstream", "false", "stdio", "false"), - std::make_tuple("fstream", "true", "fstream", "true"), - std::make_tuple("fstream", "true", "fstream", "false"), - std::make_tuple("fstream", "false", "fstream", "true"), - std::make_tuple("fstream", "false", "fstream", "false"))); +INSTANTIATE_TEST_SUITE_P(TransportTests, BufferTest, + ::testing::Values(std::make_tuple("fstream", "true", "posix", "false"), + std::make_tuple("fstream", "false", "posix", "false"), + std::make_tuple("posix", "false", "stdio", "true"), + std::make_tuple("posix", "false", "stdio", "false"), + std::make_tuple("posix", "false", "fstream", "true"), + std::make_tuple("posix", "false", "fstream", "false"), + std::make_tuple("posix", "false", "posix", "false"), + std::make_tuple("stdio", "true", "posix", "false"), + std::make_tuple("stdio", "false", "posix", "false"), + + std::make_tuple("stdio", "true", "stdio", "true"), + std::make_tuple("stdio", "true", "stdio", "false"), + std::make_tuple("stdio", "false", "stdio", "true"), + std::make_tuple("stdio", "false", "stdio", "false"), + std::make_tuple("stdio", "true", "fstream", "true"), + std::make_tuple("stdio", "true", "fstream", "false"), + std::make_tuple("stdio", "false", "fstream", "true"), + std::make_tuple("stdio", "false", "fstream", "false"), + + std::make_tuple("fstream", "true", "stdio", "true"), + std::make_tuple("fstream", "true", "stdio", "false"), + std::make_tuple("fstream", "false", "stdio", "true"), + std::make_tuple("fstream", "false", "stdio", "false"), + std::make_tuple("fstream", "true", "fstream", "true"), + std::make_tuple("fstream", "true", "fstream", "false"), + std::make_tuple("fstream", "false", "fstream", "true"), + std::make_tuple("fstream", "false", "fstream", + "false"))); #else -INSTANTIATE_TEST_SUITE_P( - TransportTests, BufferTest, - ::testing::Values(std::make_tuple("stdio", "true", "stdio", "true"), - std::make_tuple("stdio", "true", "stdio", "false"), - std::make_tuple("stdio", "false", "stdio", "true"), - std::make_tuple("stdio", "false", "stdio", "false"), - std::make_tuple("stdio", "true", "fstream", "true"), - std::make_tuple("stdio", "true", "fstream", "false"), - std::make_tuple("stdio", "false", "fstream", "true"), - std::make_tuple("stdio", "false", "fstream", "false"), - - std::make_tuple("fstream", "true", "stdio", "true"), - std::make_tuple("fstream", "true", "stdio", "false"), - std::make_tuple("fstream", "false", "stdio", "true"), - std::make_tuple("fstream", "false", "stdio", "false"), - std::make_tuple("fstream", "true", "fstream", "true"), - std::make_tuple("fstream", "true", "fstream", "false"), - std::make_tuple("fstream", "false", "fstream", "true"), - std::make_tuple("fstream", "false", "fstream", "false"))); +INSTANTIATE_TEST_SUITE_P(TransportTests, BufferTest, + ::testing::Values(std::make_tuple("stdio", "true", "stdio", "true"), + std::make_tuple("stdio", "true", "stdio", "false"), + std::make_tuple("stdio", "false", "stdio", "true"), + std::make_tuple("stdio", "false", "stdio", "false"), + std::make_tuple("stdio", "true", "fstream", "true"), + std::make_tuple("stdio", "true", "fstream", "false"), + std::make_tuple("stdio", "false", "fstream", "true"), + std::make_tuple("stdio", "false", "fstream", "false"), + + std::make_tuple("fstream", "true", "stdio", "true"), + std::make_tuple("fstream", "true", "stdio", "false"), + std::make_tuple("fstream", "false", "stdio", "true"), + std::make_tuple("fstream", "false", "stdio", "false"), + std::make_tuple("fstream", "true", "fstream", "true"), + std::make_tuple("fstream", "true", "fstream", "false"), + std::make_tuple("fstream", "false", "fstream", "true"), + std::make_tuple("fstream", "false", "fstream", + "false"))); #endif int main(int argc, char **argv) diff --git a/testing/adios2/xml/TestXMLConfig.cpp b/testing/adios2/xml/TestXMLConfig.cpp index dd2087266e..93852393d4 100644 --- a/testing/adios2/xml/TestXMLConfig.cpp +++ b/testing/adios2/xml/TestXMLConfig.cpp @@ -24,8 +24,8 @@ class XMLConfigTest : public ::testing::Test TEST_F(XMLConfigTest, TwoIOs) { - const std::string configFile( - configDir + std::string(&adios2::PathSeparator, 1) + "config1.xml"); + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + + "config1.xml"); #if ADIOS2_USE_MPI adios2::ADIOS adios(configFile, MPI_COMM_WORLD); @@ -34,8 +34,7 @@ TEST_F(XMLConfigTest, TwoIOs) #endif // must be declared at least once - EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 1"); - (void)io, std::invalid_argument); + EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 1"); (void)io, std::invalid_argument); EXPECT_NO_THROW({ adios2::IO io = adios.DeclareIO("Test IO 1"); @@ -47,14 +46,12 @@ TEST_F(XMLConfigTest, TwoIOs) EXPECT_EQ(params.at("MaxBufferSize"), "20Mb"); EXPECT_EQ(params.at("InitialBufferSize"), "1Mb"); EXPECT_EQ(params.at("BufferGrowthFactor"), "2"); - adios2::Engine engine = - io.Open("Test BP Writer 1", adios2::Mode::Write); + adios2::Engine engine = io.Open("Test BP Writer 1", adios2::Mode::Write); engine.Close(); }); EXPECT_NO_THROW(adios2::IO io = adios.AtIO("Test IO 1"); (void)io); - EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 2"); - (void)io, std::invalid_argument); + EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 2"); (void)io, std::invalid_argument); EXPECT_NO_THROW({ adios2::IO io = adios.DeclareIO("Test IO 2"); const adios2::Params params = io.Parameters(); @@ -69,12 +66,11 @@ TEST_F(XMLConfigTest, TwoIOs) TEST_F(XMLConfigTest, TwoEnginesException) { - const std::string configFile( - configDir + std::string(&adios2::PathSeparator, 1) + "config2.xml"); + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + + "config2.xml"); #if ADIOS2_USE_MPI - EXPECT_THROW(adios2::ADIOS adios(configFile, MPI_COMM_WORLD), - std::invalid_argument); + EXPECT_THROW(adios2::ADIOS adios(configFile, MPI_COMM_WORLD), std::invalid_argument); #else EXPECT_THROW(adios2::ADIOS adios(configFile), std::invalid_argument); #endif @@ -82,8 +78,7 @@ TEST_F(XMLConfigTest, TwoEnginesException) TEST_F(XMLConfigTest, OpTypeException) { - const std::string configFile(configDir + - std::string(&adios2::PathSeparator, 1) + + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + "configOpTypeException.xml"); #if ADIOS2_USE_MPI @@ -91,8 +86,7 @@ TEST_F(XMLConfigTest, OpTypeException) MPI_Comm_rank(MPI_COMM_WORLD, &rank); if (rank == 0) { - EXPECT_THROW(adios2::ADIOS adios(configFile, MPI_COMM_SELF), - std::invalid_argument); + EXPECT_THROW(adios2::ADIOS adios(configFile, MPI_COMM_SELF), std::invalid_argument); } #else EXPECT_THROW(adios2::ADIOS adios(configFile), std::invalid_argument); @@ -101,13 +95,11 @@ TEST_F(XMLConfigTest, OpTypeException) TEST_F(XMLConfigTest, OpNullException) { - const std::string configFile(configDir + - std::string(&adios2::PathSeparator, 1) + + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + "configOpNullException.xml"); #if ADIOS2_USE_MPI - EXPECT_THROW(adios2::ADIOS adios(configFile, MPI_COMM_WORLD), - std::invalid_argument); + EXPECT_THROW(adios2::ADIOS adios(configFile, MPI_COMM_WORLD), std::invalid_argument); #else EXPECT_THROW(adios2::ADIOS adios(configFile), std::invalid_argument); #endif @@ -115,13 +107,11 @@ TEST_F(XMLConfigTest, OpNullException) TEST_F(XMLConfigTest, OpNoneException) { - const std::string configFile(configDir + - std::string(&adios2::PathSeparator, 1) + + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + "configOpNoneException.xml"); #if ADIOS2_USE_MPI - EXPECT_THROW(adios2::ADIOS adios(configFile, MPI_COMM_WORLD), - std::invalid_argument); + EXPECT_THROW(adios2::ADIOS adios(configFile, MPI_COMM_WORLD), std::invalid_argument); #else EXPECT_THROW(adios2::ADIOS adios(configFile), std::invalid_argument); #endif diff --git a/testing/adios2/xml/TestXMLConfigSerial.cpp b/testing/adios2/xml/TestXMLConfigSerial.cpp index 7be266f4ad..64b661feb8 100644 --- a/testing/adios2/xml/TestXMLConfigSerial.cpp +++ b/testing/adios2/xml/TestXMLConfigSerial.cpp @@ -24,14 +24,13 @@ class XMLConfigSerialTest : public ::testing::Test TEST_F(XMLConfigSerialTest, TwoIOs) { - const std::string configFile( - configDir + std::string(&adios2::PathSeparator, 1) + "config1.xml"); + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + + "config1.xml"); adios2::ADIOS adios(configFile); // must be declared at least once - EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 1"), - std::invalid_argument); + EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 1"), std::invalid_argument); EXPECT_NO_THROW({ adios2::IO io = adios.DeclareIO("Test IO 1"); @@ -43,14 +42,12 @@ TEST_F(XMLConfigSerialTest, TwoIOs) EXPECT_EQ(params.at("MaxBufferSize"), "20Mb"); EXPECT_EQ(params.at("InitialBufferSize"), "1Mb"); EXPECT_EQ(params.at("BufferGrowthFactor"), "2"); - adios2::Engine engine = - io.Open("Test BP Writer 1", adios2::Mode::Write); + adios2::Engine engine = io.Open("Test BP Writer 1", adios2::Mode::Write); engine.Close(); }); EXPECT_NO_THROW(adios2::IO io = adios.AtIO("Test IO 1")); - EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 2"), - std::invalid_argument); + EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 2"), std::invalid_argument); EXPECT_NO_THROW({ adios2::IO io = adios.DeclareIO("Test IO 2"); const adios2::Params params = io.Parameters(); @@ -65,16 +62,15 @@ TEST_F(XMLConfigSerialTest, TwoIOs) TEST_F(XMLConfigSerialTest, TwoEnginesException) { - const std::string configFile( - configDir + std::string(&adios2::PathSeparator, 1) + "config2.xml"); + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + + "config2.xml"); EXPECT_THROW(adios2::ADIOS adios(configFile), std::invalid_argument); } TEST_F(XMLConfigSerialTest, OpTypeException) { - const std::string configFile(configDir + - std::string(&adios2::PathSeparator, 1) + + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + "configOpTypeException.xml"); EXPECT_THROW(adios2::ADIOS adios(configFile), std::invalid_argument); @@ -82,8 +78,7 @@ TEST_F(XMLConfigSerialTest, OpTypeException) TEST_F(XMLConfigSerialTest, OpNullException) { - const std::string configFile(configDir + - std::string(&adios2::PathSeparator, 1) + + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + "configOpNullException.xml"); EXPECT_THROW(adios2::ADIOS adios(configFile), std::invalid_argument); @@ -91,8 +86,7 @@ TEST_F(XMLConfigSerialTest, OpNullException) TEST_F(XMLConfigSerialTest, OpNoneException) { - const std::string configFile(configDir + - std::string(&adios2::PathSeparator, 1) + + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + "configOpNoneException.xml"); EXPECT_THROW(adios2::ADIOS adios(configFile), std::invalid_argument); diff --git a/testing/adios2/yaml/TestYAMLConfig.cpp b/testing/adios2/yaml/TestYAMLConfig.cpp index d13e4e86a1..cd0098963a 100644 --- a/testing/adios2/yaml/TestYAMLConfig.cpp +++ b/testing/adios2/yaml/TestYAMLConfig.cpp @@ -20,8 +20,8 @@ class YAMLConfigTest : public ::testing::Test TEST_F(YAMLConfigTest, TwoIOs) { - const std::string configFile( - configDir + std::string(&adios2::PathSeparator, 1) + "config1.yaml"); + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + + "config1.yaml"); #if ADIOS2_USE_MPI adios2::ADIOS adios(configFile, MPI_COMM_WORLD); @@ -30,8 +30,7 @@ TEST_F(YAMLConfigTest, TwoIOs) #endif // must be declared at least once - EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 1"); - (void)io, std::invalid_argument); + EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 1"); (void)io, std::invalid_argument); EXPECT_NO_THROW({ adios2::IO io = adios.DeclareIO("Test IO 1"); @@ -43,14 +42,12 @@ TEST_F(YAMLConfigTest, TwoIOs) EXPECT_EQ(params.at("MaxBufferSize"), "20Mb"); EXPECT_EQ(params.at("InitialBufferSize"), "1Mb"); EXPECT_EQ(params.at("BufferGrowthFactor"), "2"); - adios2::Engine engine = - io.Open("Test BP Writer 1", adios2::Mode::Write); + adios2::Engine engine = io.Open("Test BP Writer 1", adios2::Mode::Write); engine.Close(); }); EXPECT_NO_THROW(adios2::IO io = adios.AtIO("Test IO 1"); (void)io); - EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 2"); - (void)io, std::invalid_argument); + EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 2"); (void)io, std::invalid_argument); EXPECT_NO_THROW({ adios2::IO io = adios.DeclareIO("Test IO 2"); const adios2::Params params = io.Parameters(); @@ -65,8 +62,7 @@ TEST_F(YAMLConfigTest, TwoIOs) TEST_F(YAMLConfigTest, OpTypeException) { - const std::string configFile(configDir + - std::string(&adios2::PathSeparator, 1) + + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + "configOpTypeException.yaml"); #if ADIOS2_USE_MPI @@ -75,8 +71,7 @@ TEST_F(YAMLConfigTest, OpTypeException) if (rank == 0) { - EXPECT_THROW(adios2::ADIOS adios(configFile, MPI_COMM_SELF), - std::invalid_argument); + EXPECT_THROW(adios2::ADIOS adios(configFile, MPI_COMM_SELF), std::invalid_argument); } #else EXPECT_THROW(adios2::ADIOS adios(configFile), std::invalid_argument); @@ -85,13 +80,11 @@ TEST_F(YAMLConfigTest, OpTypeException) TEST_F(YAMLConfigTest, OpNullException) { - const std::string configFile(configDir + - std::string(&adios2::PathSeparator, 1) + + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + "configOpNullException.yaml"); #if ADIOS2_USE_MPI - EXPECT_THROW(adios2::ADIOS adios(configFile, MPI_COMM_WORLD), - std::invalid_argument); + EXPECT_THROW(adios2::ADIOS adios(configFile, MPI_COMM_WORLD), std::invalid_argument); #else EXPECT_THROW(adios2::ADIOS adios(configFile), std::invalid_argument); #endif diff --git a/testing/adios2/yaml/TestYAMLConfigSerial.cpp b/testing/adios2/yaml/TestYAMLConfigSerial.cpp index 30be803345..8497b1ae0b 100644 --- a/testing/adios2/yaml/TestYAMLConfigSerial.cpp +++ b/testing/adios2/yaml/TestYAMLConfigSerial.cpp @@ -20,14 +20,13 @@ class YAMLConfigTestSerial : public ::testing::Test TEST_F(YAMLConfigTestSerial, TwoIOs) { - const std::string configFile( - configDir + std::string(&adios2::PathSeparator, 1) + "config1.yaml"); + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + + "config1.yaml"); adios2::ADIOS adios(configFile); // must be declared at least once - EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 1"), - std::invalid_argument); + EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 1"), std::invalid_argument); EXPECT_NO_THROW({ adios2::IO io = adios.DeclareIO("Test IO 1"); @@ -39,14 +38,12 @@ TEST_F(YAMLConfigTestSerial, TwoIOs) EXPECT_EQ(params.at("MaxBufferSize"), "20Mb"); EXPECT_EQ(params.at("InitialBufferSize"), "1Mb"); EXPECT_EQ(params.at("BufferGrowthFactor"), "2"); - adios2::Engine engine = - io.Open("Test BP Writer 1", adios2::Mode::Write); + adios2::Engine engine = io.Open("Test BP Writer 1", adios2::Mode::Write); engine.Close(); }); EXPECT_NO_THROW(adios2::IO io = adios.AtIO("Test IO 1")); - EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 2"), - std::invalid_argument); + EXPECT_THROW(adios2::IO io = adios.AtIO("Test IO 2"), std::invalid_argument); EXPECT_NO_THROW({ adios2::IO io = adios.DeclareIO("Test IO 2"); const adios2::Params params = io.Parameters(); @@ -61,8 +58,7 @@ TEST_F(YAMLConfigTestSerial, TwoIOs) TEST_F(YAMLConfigTestSerial, OpTypeException) { - const std::string configFile(configDir + - std::string(&adios2::PathSeparator, 1) + + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + "configOpTypeException.yaml"); EXPECT_THROW(adios2::ADIOS adios(configFile), std::invalid_argument); @@ -70,8 +66,7 @@ TEST_F(YAMLConfigTestSerial, OpTypeException) TEST_F(YAMLConfigTestSerial, OpNullException) { - const std::string configFile(configDir + - std::string(&adios2::PathSeparator, 1) + + const std::string configFile(configDir + std::string(&adios2::PathSeparator, 1) + "configOpNullException.yaml"); EXPECT_THROW(adios2::ADIOS adios(configFile), std::invalid_argument); diff --git a/testing/h5vol/TestH5VolWriteReadBPFile.cpp b/testing/h5vol/TestH5VolWriteReadBPFile.cpp index 0ac1f61d9f..5fdd23b679 100644 --- a/testing/h5vol/TestH5VolWriteReadBPFile.cpp +++ b/testing/h5vol/TestH5VolWriteReadBPFile.cpp @@ -34,14 +34,12 @@ class HDF5NativeReader bool Advance(); - void GetVarInfo(const std::string varName, std::vector &dims, - hid_t &h5Type); + void GetVarInfo(const std::string varName, std::vector &dims, hid_t &h5Type); // If offset, count and memspaceSize are provided, then variable would be // read by selection void ReadString(const std::string varName, std::string &result); - void ReadVar(const std::string varName, void *dataArray, - hsize_t *offset = nullptr, hsize_t *count = nullptr, - const size_t memsspaceSize = 0); + void ReadVar(const std::string varName, void *dataArray, hsize_t *offset = nullptr, + hsize_t *count = nullptr, const size_t memsspaceSize = 0); int m_CurrentTimeStep; unsigned int m_TotalTimeSteps; @@ -64,12 +62,10 @@ class HDF5NativeWriter void Advance(); - void CreateAndStoreScalar(std::string const &variableName, hid_t h5Type, - const void *values); - void CreateAndStoreVar(std::string const &variableName, int dimSize, - hid_t h5Type, const hsize_t *global_dims, - const hsize_t *offsets, const hsize_t *counts, - const void *values); + void CreateAndStoreScalar(std::string const &variableName, hid_t h5Type, const void *values); + void CreateAndStoreVar(std::string const &variableName, int dimSize, hid_t h5Type, + const hsize_t *global_dims, const hsize_t *offsets, + const hsize_t *counts, const void *values); int m_CurrentTimeStep; unsigned int m_TotalTimeSteps; @@ -102,15 +98,13 @@ HDF5NativeWriter::HDF5NativeWriter(const std::string &fileName) /* * Create a new file collectively and release property list identifier. */ - m_FileId = H5Fcreate(fileName.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, - m_FilePropertyListId); + m_FileId = H5Fcreate(fileName.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, m_FilePropertyListId); if (m_FileId < 0) { throw std::runtime_error("Unable to create file: " + fileName); } - m_GroupId = H5Gcreate2(m_FileId, ts0.c_str(), H5P_DEFAULT, H5P_DEFAULT, - H5P_DEFAULT); + m_GroupId = H5Gcreate2(m_FileId, ts0.c_str(), H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (m_GroupId < 0) { @@ -128,8 +122,7 @@ HDF5NativeWriter::~HDF5NativeWriter() // write NumStep attr hid_t s = H5Screate(H5S_SCALAR); - hid_t attr = H5Acreate(m_FileId, "NumSteps", H5T_NATIVE_UINT, s, - H5P_DEFAULT, H5P_DEFAULT); + hid_t attr = H5Acreate(m_FileId, "NumSteps", H5T_NATIVE_UINT, s, H5P_DEFAULT, H5P_DEFAULT); unsigned int totalAdiosSteps = m_CurrentTimeStep + 1; if (m_GroupId < 0) @@ -163,18 +156,16 @@ void HDF5NativeWriter::CheckWriteGroup() std::string stepName = "/Step" + std::to_string(m_CurrentTimeStep); - m_GroupId = H5Gcreate2(m_FileId, stepName.c_str(), H5P_DEFAULT, H5P_DEFAULT, - H5P_DEFAULT); + m_GroupId = H5Gcreate2(m_FileId, stepName.c_str(), H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); if (m_GroupId < 0) { - throw std::runtime_error("ERROR: Unable to create HDF5 group " + - stepName); + throw std::runtime_error("ERROR: Unable to create HDF5 group " + stepName); } } -void HDF5NativeWriter::CreateAndStoreScalar(std::string const &variableName, - hid_t h5Type, const void *values) +void HDF5NativeWriter::CreateAndStoreScalar(std::string const &variableName, hid_t h5Type, + const void *values) { CheckWriteGroup(); @@ -189,10 +180,9 @@ void HDF5NativeWriter::CreateAndStoreScalar(std::string const &variableName, if (h5Type != H5T_STRING) { - dsetID = H5Dcreate(m_GroupId, variableName.c_str(), h5Type, filespaceID, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); - herr_t status = - H5Dwrite(dsetID, h5Type, H5S_ALL, H5S_ALL, plistID, values); + dsetID = H5Dcreate(m_GroupId, variableName.c_str(), h5Type, filespaceID, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); + herr_t status = H5Dwrite(dsetID, h5Type, H5S_ALL, H5S_ALL, plistID, values); EXPECT_TRUE(status > 0); } else @@ -205,8 +195,8 @@ void HDF5NativeWriter::CreateAndStoreScalar(std::string const &variableName, ret = H5Tset_strpad(type, H5T_STR_NULLTERM); /* Test creating a "normal" sized string attribute */ - dsetID = H5Dcreate(m_GroupId, variableName.c_str(), type, filespaceID, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + dsetID = H5Dcreate(m_GroupId, variableName.c_str(), type, filespaceID, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); ret = H5Dwrite(dsetID, type, H5S_ALL, H5S_ALL, plistID, values); EXPECT_GE(ret, 0); @@ -217,8 +207,7 @@ void HDF5NativeWriter::CreateAndStoreScalar(std::string const &variableName, hid_t ret2 = H5Dread(dsetID, type, H5S_ALL, H5S_ALL, H5P_DEFAULT, val); EXPECT_GE(ret2, 0); - std::cerr << " .... typesize=" << typesize << " val=" << val - << std::endl; + std::cerr << " .... typesize=" << typesize << " val=" << val << std::endl; free val; #endif } @@ -227,12 +216,9 @@ void HDF5NativeWriter::CreateAndStoreScalar(std::string const &variableName, H5Dclose(dsetID); } -void HDF5NativeWriter::CreateAndStoreVar(std::string const &variableName, - int dimSize, hid_t h5Type, - const hsize_t *global_dims, - const hsize_t *offsets, - const hsize_t *counts, - const void *values) +void HDF5NativeWriter::CreateAndStoreVar(std::string const &variableName, int dimSize, hid_t h5Type, + const hsize_t *global_dims, const hsize_t *offsets, + const hsize_t *counts, const void *values) { if (h5Type == H5T_STRING) { @@ -243,8 +229,8 @@ void HDF5NativeWriter::CreateAndStoreVar(std::string const &variableName, CheckWriteGroup(); hid_t fileSpace = H5Screate_simple(dimSize, global_dims, NULL); - hid_t dsetID = H5Dcreate(m_GroupId, variableName.c_str(), h5Type, fileSpace, - H5P_DEFAULT, H5P_DEFAULT, H5P_DEFAULT); + hid_t dsetID = H5Dcreate(m_GroupId, variableName.c_str(), h5Type, fileSpace, H5P_DEFAULT, + H5P_DEFAULT, H5P_DEFAULT); hid_t memSpace = H5Screate_simple(dimSize, counts, NULL); // Select hyperslab @@ -257,13 +243,11 @@ void HDF5NativeWriter::CreateAndStoreVar(std::string const &variableName, #ifdef TEST_HDF5_MPI H5Pset_dxpl_mpio(plistID, H5FD_MPIO_COLLECTIVE); #endif - herr_t status = - H5Dwrite(dsetID, h5Type, memSpace, fileSpace, plistID, values); + herr_t status = H5Dwrite(dsetID, h5Type, memSpace, fileSpace, plistID, values); if (status < 0) { - throw std::runtime_error( - "ERROR: HDF5 file Write failed, in call to Write\n"); + throw std::runtime_error("ERROR: HDF5 file Write failed, in call to Write\n"); } H5Dclose(dsetID); @@ -306,8 +290,7 @@ HDF5NativeReader::HDF5NativeReader(const std::string fileName) m_GroupId = H5Gopen(m_FileId, ts0.c_str(), H5P_DEFAULT); if (m_GroupId < 0) { - throw std::runtime_error("Unable to open group " + ts0 + - " for reading"); + throw std::runtime_error("Unable to open group " + ts0 + " for reading"); } hid_t attrId = H5Aopen(m_FileId, "NumSteps", H5P_DEFAULT); @@ -331,35 +314,31 @@ HDF5NativeReader::~HDF5NativeReader() H5VL_ADIOS2_unset(); } -void HDF5NativeReader::GetVarInfo(const std::string varName, - std::vector &dims, hid_t &h5Type) +void HDF5NativeReader::GetVarInfo(const std::string varName, std::vector &dims, + hid_t &h5Type) { hid_t dataSetId = H5Dopen(m_GroupId, varName.c_str(), H5P_DEFAULT); if (dataSetId < 0) { - throw std::runtime_error("Unable to open dataset " + varName + - " when getVarInfo"); + throw std::runtime_error("Unable to open dataset " + varName + " when getVarInfo"); } hid_t fileSpaceId = H5Dget_space(dataSetId); if (fileSpaceId < 0) { - throw std::runtime_error("Unable to get filespace for dataset " + - varName); + throw std::runtime_error("Unable to get filespace for dataset " + varName); } const int ndims = H5Sget_simple_extent_ndims(fileSpaceId); if (ndims < 0) { - throw std::runtime_error( - "Unable to get number of dimensions for dataset " + varName); + throw std::runtime_error("Unable to get number of dimensions for dataset " + varName); } dims.resize(ndims); if (H5Sget_simple_extent_dims(fileSpaceId, dims.data(), NULL) != ndims) { - throw std::runtime_error("Unable to get dimensions for dataset " + - varName); + throw std::runtime_error("Unable to get dimensions for dataset " + varName); } h5Type = H5Dget_type(dataSetId); @@ -385,16 +364,14 @@ bool HDF5NativeReader::Advance() m_GroupId = H5Gopen(m_FileId, tsName.c_str(), H5P_DEFAULT); if (m_GroupId < 0) { - throw std::runtime_error("Unable to open group " + tsName + - " for reading"); + throw std::runtime_error("Unable to open group " + tsName + " for reading"); } ++m_CurrentTimeStep; return true; } -void HDF5NativeReader::ReadString(const std::string varName, - std::string &result) +void HDF5NativeReader::ReadString(const std::string varName, std::string &result) { if (m_GroupId < 0) { @@ -405,8 +382,7 @@ void HDF5NativeReader::ReadString(const std::string varName, hid_t dataSetId = H5Dopen(m_GroupId, varName.c_str(), H5P_DEFAULT); if (dataSetId < 0) { - throw std::runtime_error("Unable to open dataset " + varName + - "when ReadVar"); + throw std::runtime_error("Unable to open dataset " + varName + "when ReadVar"); } hid_t h5Type = H5Dget_type(dataSetId); @@ -421,9 +397,8 @@ void HDF5NativeReader::ReadString(const std::string varName, H5Dclose(dataSetId); } -void HDF5NativeReader::ReadVar(const std::string varName, void *dataArray, - hsize_t *offset, hsize_t *count, - const size_t memspaceSize) +void HDF5NativeReader::ReadVar(const std::string varName, void *dataArray, hsize_t *offset, + hsize_t *count, const size_t memspaceSize) { if (m_GroupId < 0) { @@ -434,14 +409,12 @@ void HDF5NativeReader::ReadVar(const std::string varName, void *dataArray, hid_t dataSetId = H5Dopen(m_GroupId, varName.c_str(), H5P_DEFAULT); if (dataSetId < 0) { - throw std::runtime_error("Unable to open dataset " + varName + - "when ReadVar"); + throw std::runtime_error("Unable to open dataset " + varName + "when ReadVar"); } hid_t fileSpace = H5Dget_space(dataSetId); if (fileSpace < 0) { - throw std::runtime_error("Unable to get filespace for dataset " + - varName); + throw std::runtime_error("Unable to get filespace for dataset " + varName); } hid_t h5type = H5Dget_type(dataSetId); @@ -454,12 +427,10 @@ void HDF5NativeReader::ReadVar(const std::string varName, void *dataArray, // Get the dataspace hid_t dataspace = H5Dget_space(dataSetId); // Define hyperslab in the dataset - hid_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, offset, - NULL, count, NULL); + hid_t status = H5Sselect_hyperslab(dataspace, H5S_SELECT_SET, offset, NULL, count, NULL); if (status < 0) { - throw std::runtime_error( - "Unable to create a selection for dataset" + varName); + throw std::runtime_error("Unable to create a selection for dataset" + varName); } /* @@ -469,14 +440,12 @@ void HDF5NativeReader::ReadVar(const std::string varName, void *dataArray, */ hid_t memspace = H5S_ALL; - hid_t ret = H5Dread(dataSetId, h5type, memspace, dataspace, H5P_DEFAULT, - dataArray); + hid_t ret = H5Dread(dataSetId, h5type, memspace, dataspace, H5P_DEFAULT, dataArray); EXPECT_TRUE(ret >= 0); } else { - hid_t ret = H5Dread(dataSetId, h5type, H5S_ALL, H5S_ALL, H5P_DEFAULT, - dataArray); + hid_t ret = H5Dread(dataSetId, h5type, H5S_ALL, H5S_ALL, H5P_DEFAULT, dataArray); EXPECT_TRUE(ret >= 0); } @@ -523,38 +492,27 @@ TEST_F(H5VolWriteReadTest, H5VolWriteHDF5Read1D8) SmallTestData currentTestData = generateNewSmallTestData(m_TestData, step, mpiRank, mpiSize); - h5writer.CreateAndStoreScalar("iString", H5T_STRING, - currentTestData.S1.data()); - h5writer.CreateAndStoreVar("i8", dimSize, H5T_NATIVE_INT8, - global_dims, offset, count, + h5writer.CreateAndStoreScalar("iString", H5T_STRING, currentTestData.S1.data()); + h5writer.CreateAndStoreVar("i8", dimSize, H5T_NATIVE_INT8, global_dims, offset, count, currentTestData.I8.data()); - h5writer.CreateAndStoreVar("i16", dimSize, H5T_NATIVE_SHORT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i16", dimSize, H5T_NATIVE_SHORT, global_dims, offset, count, currentTestData.I16.data()); - h5writer.CreateAndStoreVar("i32", dimSize, H5T_NATIVE_INT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i32", dimSize, H5T_NATIVE_INT, global_dims, offset, count, currentTestData.I32.data()); - h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LONG, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LONG, global_dims, offset, count, currentTestData.I64.data()); - h5writer.CreateAndStoreVar("u8", dimSize, H5T_NATIVE_UCHAR, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u8", dimSize, H5T_NATIVE_UCHAR, global_dims, offset, count, currentTestData.U8.data()); - h5writer.CreateAndStoreVar("u16", dimSize, H5T_NATIVE_USHORT, - global_dims, offset, count, - currentTestData.U16.data()); - h5writer.CreateAndStoreVar("u32", dimSize, H5T_NATIVE_UINT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u16", dimSize, H5T_NATIVE_USHORT, global_dims, offset, + count, currentTestData.U16.data()); + h5writer.CreateAndStoreVar("u32", dimSize, H5T_NATIVE_UINT, global_dims, offset, count, currentTestData.U32.data()); - h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULONG, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULONG, global_dims, offset, count, currentTestData.U64.data()); - h5writer.CreateAndStoreVar("r32", dimSize, H5T_NATIVE_FLOAT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("r32", dimSize, H5T_NATIVE_FLOAT, global_dims, offset, count, currentTestData.R32.data()); - h5writer.CreateAndStoreVar("r64", dimSize, H5T_NATIVE_DOUBLE, - global_dims, offset, count, - currentTestData.R64.data()); + h5writer.CreateAndStoreVar("r64", dimSize, H5T_NATIVE_DOUBLE, global_dims, offset, + count, currentTestData.R64.data()); h5writer.Advance(); } } @@ -724,38 +682,27 @@ TEST_F(H5VolWriteReadTest, H5VolWriteHDF5Read2D2x4) SmallTestData currentTestData = generateNewSmallTestData(m_TestData, step, mpiRank, mpiSize); - h5writer.CreateAndStoreScalar("iString", H5T_STRING, - currentTestData.S1.data()); - h5writer.CreateAndStoreVar("i8", dimSize, H5T_NATIVE_INT8, - global_dims, offset, count, + h5writer.CreateAndStoreScalar("iString", H5T_STRING, currentTestData.S1.data()); + h5writer.CreateAndStoreVar("i8", dimSize, H5T_NATIVE_INT8, global_dims, offset, count, currentTestData.I8.data()); - h5writer.CreateAndStoreVar("i16", dimSize, H5T_NATIVE_SHORT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i16", dimSize, H5T_NATIVE_SHORT, global_dims, offset, count, currentTestData.I16.data()); - h5writer.CreateAndStoreVar("i32", dimSize, H5T_NATIVE_INT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i32", dimSize, H5T_NATIVE_INT, global_dims, offset, count, currentTestData.I32.data()); - h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LONG, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LONG, global_dims, offset, count, currentTestData.I64.data()); - h5writer.CreateAndStoreVar("u8", dimSize, H5T_NATIVE_UCHAR, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u8", dimSize, H5T_NATIVE_UCHAR, global_dims, offset, count, currentTestData.U8.data()); - h5writer.CreateAndStoreVar("u16", dimSize, H5T_NATIVE_USHORT, - global_dims, offset, count, - currentTestData.U16.data()); - h5writer.CreateAndStoreVar("u32", dimSize, H5T_NATIVE_UINT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u16", dimSize, H5T_NATIVE_USHORT, global_dims, offset, + count, currentTestData.U16.data()); + h5writer.CreateAndStoreVar("u32", dimSize, H5T_NATIVE_UINT, global_dims, offset, count, currentTestData.U32.data()); - h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULONG, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULONG, global_dims, offset, count, currentTestData.U64.data()); - h5writer.CreateAndStoreVar("r32", dimSize, H5T_NATIVE_FLOAT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("r32", dimSize, H5T_NATIVE_FLOAT, global_dims, offset, count, currentTestData.R32.data()); - h5writer.CreateAndStoreVar("r64", dimSize, H5T_NATIVE_DOUBLE, - global_dims, offset, count, - currentTestData.R64.data()); + h5writer.CreateAndStoreVar("r64", dimSize, H5T_NATIVE_DOUBLE, global_dims, offset, + count, currentTestData.R64.data()); h5writer.Advance(); } } @@ -938,38 +885,27 @@ TEST_F(H5VolWriteReadTest, H5VolWriteHDF5Read2D4x2) SmallTestData currentTestData = generateNewSmallTestData(m_TestData, step, mpiRank, mpiSize); - h5writer.CreateAndStoreScalar("iString", H5T_STRING, - currentTestData.S1.data()); - h5writer.CreateAndStoreVar("i8", dimSize, H5T_NATIVE_INT8, - global_dims, offset, count, + h5writer.CreateAndStoreScalar("iString", H5T_STRING, currentTestData.S1.data()); + h5writer.CreateAndStoreVar("i8", dimSize, H5T_NATIVE_INT8, global_dims, offset, count, currentTestData.I8.data()); - h5writer.CreateAndStoreVar("i16", dimSize, H5T_NATIVE_SHORT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i16", dimSize, H5T_NATIVE_SHORT, global_dims, offset, count, currentTestData.I16.data()); - h5writer.CreateAndStoreVar("i32", dimSize, H5T_NATIVE_INT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i32", dimSize, H5T_NATIVE_INT, global_dims, offset, count, currentTestData.I32.data()); - h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LONG, - global_dims, offset, count, + h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LONG, global_dims, offset, count, currentTestData.I64.data()); - h5writer.CreateAndStoreVar("u8", dimSize, H5T_NATIVE_UCHAR, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u8", dimSize, H5T_NATIVE_UCHAR, global_dims, offset, count, currentTestData.U8.data()); - h5writer.CreateAndStoreVar("u16", dimSize, H5T_NATIVE_USHORT, - global_dims, offset, count, - currentTestData.U16.data()); - h5writer.CreateAndStoreVar("u32", dimSize, H5T_NATIVE_UINT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u16", dimSize, H5T_NATIVE_USHORT, global_dims, offset, + count, currentTestData.U16.data()); + h5writer.CreateAndStoreVar("u32", dimSize, H5T_NATIVE_UINT, global_dims, offset, count, currentTestData.U32.data()); - h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULONG, - global_dims, offset, count, + h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULONG, global_dims, offset, count, currentTestData.U64.data()); - h5writer.CreateAndStoreVar("r32", dimSize, H5T_NATIVE_FLOAT, - global_dims, offset, count, + h5writer.CreateAndStoreVar("r32", dimSize, H5T_NATIVE_FLOAT, global_dims, offset, count, currentTestData.R32.data()); - h5writer.CreateAndStoreVar("r64", dimSize, H5T_NATIVE_DOUBLE, - global_dims, offset, count, - currentTestData.R64.data()); + h5writer.CreateAndStoreVar("r64", dimSize, H5T_NATIVE_DOUBLE, global_dims, offset, + count, currentTestData.R64.data()); h5writer.Advance(); } } diff --git a/testing/install/CatalystEnginePlugin/testCatalystEngine.cpp b/testing/install/CatalystEnginePlugin/testCatalystEngine.cpp index 5963c56e1c..877f0121fc 100644 --- a/testing/install/CatalystEnginePlugin/testCatalystEngine.cpp +++ b/testing/install/CatalystEnginePlugin/testCatalystEngine.cpp @@ -16,15 +16,13 @@ int main(int argc, char *argv[]) adios2::IO io = adios.DeclareIO("PluginTest"); io.SetEngine("plugin"); - auto u = - io.DefineVariable("density", {N, N, N}, {0, 0, 0}, {N, N, N}); + auto u = io.DefineVariable("density", {N, N, N}, {0, 0, 0}, {N, N, N}); adios2::Engine writer = io.Open("writer", adios2::Mode::Write); for (int64_t timeStep = 0; timeStep < 2; ++timeStep) { writer.BeginStep(); std::vector v(N * N * N, 3.2); - std::cout << "Putting data at address " << v.data() - << " into inline writer.\n"; + std::cout << "Putting data at address " << v.data() << " into inline writer.\n"; writer.Put(u, v.data()); writer.EndStep(); } diff --git a/testing/utils/SmallTestData_c.h b/testing/utils/SmallTestData_c.h index f8a150cdde..525868848a 100644 --- a/testing/utils/SmallTestData_c.h +++ b/testing/utils/SmallTestData_c.h @@ -15,21 +15,17 @@ int8_t data_I8[10] = {0, 1, -2, 3, -4, 5, -6, 7, -8, 9}; int16_t data_I16[10] = {512, 513, -510, 515, -508, 517, -506, 519, -504, 521}; int32_t data_I32[10] = {131072, 131073, -131070, 131075, -131068, 131077, -131066, 131079, -131064, 131081}; -int64_t data_I64[10] = {8589934592, 8589934593, -8589934590, 8589934595, - -8589934588, 8589934597, -8589934586, 8589934599, - -8589934584, 8589934601}; +int64_t data_I64[10] = {8589934592, 8589934593, -8589934590, 8589934595, -8589934588, + 8589934597, -8589934586, 8589934599, -8589934584, 8589934601}; uint8_t data_U8[10] = {128, 129, 130, 131, 132, 133, 134, 135, 136, 137}; -uint16_t data_U16[10] = {32768, 32769, 32770, 32771, 32772, - 32773, 32774, 32775, 32776, 32777}; -uint32_t data_U32[10] = {2147483648, 2147483649, 2147483650, 2147483651, - 2147483652, 2147483653, 2147483654, 2147483655, - 2147483656, 2147483657}; -uint64_t data_U64[10] = {9223372036854775808UL, 9223372036854775809UL, - 9223372036854775810UL, 9223372036854775811UL, - 9223372036854775812UL, 9223372036854775813UL, - 9223372036854775814UL, 9223372036854775815UL, - 9223372036854775816UL, 9223372036854775817UL}; +uint16_t data_U16[10] = {32768, 32769, 32770, 32771, 32772, 32773, 32774, 32775, 32776, 32777}; +uint32_t data_U32[10] = {2147483648, 2147483649, 2147483650, 2147483651, 2147483652, + 2147483653, 2147483654, 2147483655, 2147483656, 2147483657}; +uint64_t data_U64[10] = {9223372036854775808UL, 9223372036854775809UL, 9223372036854775810UL, + 9223372036854775811UL, 9223372036854775812UL, 9223372036854775813UL, + 9223372036854775814UL, 9223372036854775815UL, 9223372036854775816UL, + 9223372036854775817UL}; float data_R32[10] = {0, 1, 2, 3, 4, 5, 6, 7, 8, 9}; double data_R64[10] = {0, 1, 2, 3, 4, 5, 6, 7, 8, 9}; @@ -37,10 +33,8 @@ double data_R64[10] = {0, 1, 2, 3, 4, 5, 6, 7, 8, 9}; /* 2D arrays */ size_t d2_Nx = 4; size_t d2_Ny = 5; -double d2_R64[4][5] = {{0, 1, 2, 3, 4}, - {5, 6, 7, 8, 9}, - {10, 11, 12, 13, 14}, - {15, 16, 17, 18, 19}}; +double d2_R64[4][5] = { + {0, 1, 2, 3, 4}, {5, 6, 7, 8, 9}, {10, 11, 12, 13, 14}, {15, 16, 17, 18, 19}}; const char *strarray[] = {"first", "second", "third", "fourth"}; diff --git a/testing/utils/changingshape/TestUtilsChangingShape.cpp b/testing/utils/changingshape/TestUtilsChangingShape.cpp index 4bab2836e2..fc1f2e3022 100644 --- a/testing/utils/changingshape/TestUtilsChangingShape.cpp +++ b/testing/utils/changingshape/TestUtilsChangingShape.cpp @@ -55,19 +55,15 @@ int main(int argc, char **argv) adios2::Dims start{static_cast(rank * Nx), 0}; adios2::Dims count{1, Nx}; // variable that changes shape every step - auto var_ch = - outIO.DefineVariable("ChangingShapeVar", shape, start, count); + auto var_ch = outIO.DefineVariable("ChangingShapeVar", shape, start, count); // variable that is written every other steps but not changing shape - auto var_alt = outIO.DefineVariable("AlternatingStepsVar", shape, - start, count); + auto var_alt = outIO.DefineVariable("AlternatingStepsVar", shape, start, count); // variable that is written every other steps AND is changing shape - auto var_altch = outIO.DefineVariable( - "AlternatingStepsAndChangingShapeVar", shape, start, count); + auto var_altch = + outIO.DefineVariable("AlternatingStepsAndChangingShapeVar", shape, start, count); // Other ("normal") variables - auto var_fixed = - outIO.DefineVariable("FixedShapeVar", shape, start, count); - auto var_single = - outIO.DefineVariable("SingleStepVar", shape, start, count); + auto var_fixed = outIO.DefineVariable("FixedShapeVar", shape, start, count); + auto var_single = outIO.DefineVariable("SingleStepVar", shape, start, count); std::vector buf(Nx + nsteps / 2 + 1, 0.0); diff --git a/testing/utils/cwriter/TestUtilsCWriter.c b/testing/utils/cwriter/TestUtilsCWriter.c index 3b380386fd..04db7d8d6e 100644 --- a/testing/utils/cwriter/TestUtilsCWriter.c +++ b/testing/utils/cwriter/TestUtilsCWriter.c @@ -64,34 +64,34 @@ int main(int argc, char *argv[]) count2[1] = d2_Ny; // Define variables in ioH - adios2_define_variable(ioH, "nproc", adios2_type_int32_t, 0, NULL, NULL, - NULL, adios2_constant_dims_true); - - adios2_define_variable(ioH, "varI8", adios2_type_int8_t, 1, shape, start, - count, adios2_constant_dims_true); - adios2_define_variable(ioH, "varI16", adios2_type_int16_t, 1, shape, start, - count, adios2_constant_dims_true); - adios2_define_variable(ioH, "varI32", adios2_type_int32_t, 1, shape, start, - count, adios2_constant_dims_true); - adios2_define_variable(ioH, "varI64", adios2_type_int64_t, 1, shape, start, - count, adios2_constant_dims_true); - - adios2_define_variable(ioH, "varU8", adios2_type_uint8_t, 1, shape, start, - count, adios2_constant_dims_true); - adios2_define_variable(ioH, "varU16", adios2_type_uint16_t, 1, shape, start, - count, adios2_constant_dims_true); - adios2_define_variable(ioH, "varU32", adios2_type_uint32_t, 1, shape, start, - count, adios2_constant_dims_true); - adios2_define_variable(ioH, "varU64", adios2_type_uint64_t, 1, shape, start, - count, adios2_constant_dims_true); - - adios2_define_variable(ioH, "varR32", adios2_type_float, 1, shape, start, - count, adios2_constant_dims_true); - adios2_define_variable(ioH, "varR64", adios2_type_double, 1, shape, start, - count, adios2_constant_dims_true); - - adios2_define_variable(ioH, "R64_2d", adios2_type_double, 2, shape2, start2, - count2, adios2_constant_dims_true); + adios2_define_variable(ioH, "nproc", adios2_type_int32_t, 0, NULL, NULL, NULL, + adios2_constant_dims_true); + + adios2_define_variable(ioH, "varI8", adios2_type_int8_t, 1, shape, start, count, + adios2_constant_dims_true); + adios2_define_variable(ioH, "varI16", adios2_type_int16_t, 1, shape, start, count, + adios2_constant_dims_true); + adios2_define_variable(ioH, "varI32", adios2_type_int32_t, 1, shape, start, count, + adios2_constant_dims_true); + adios2_define_variable(ioH, "varI64", adios2_type_int64_t, 1, shape, start, count, + adios2_constant_dims_true); + + adios2_define_variable(ioH, "varU8", adios2_type_uint8_t, 1, shape, start, count, + adios2_constant_dims_true); + adios2_define_variable(ioH, "varU16", adios2_type_uint16_t, 1, shape, start, count, + adios2_constant_dims_true); + adios2_define_variable(ioH, "varU32", adios2_type_uint32_t, 1, shape, start, count, + adios2_constant_dims_true); + adios2_define_variable(ioH, "varU64", adios2_type_uint64_t, 1, shape, start, count, + adios2_constant_dims_true); + + adios2_define_variable(ioH, "varR32", adios2_type_float, 1, shape, start, count, + adios2_constant_dims_true); + adios2_define_variable(ioH, "varR64", adios2_type_double, 1, shape, start, count, + adios2_constant_dims_true); + + adios2_define_variable(ioH, "R64_2d", adios2_type_double, 2, shape2, start2, count2, + adios2_constant_dims_true); // Define attributes in ioH adios2_define_attribute(ioH, "name", adios2_type_string, "TestUtilsCWrite"); @@ -99,8 +99,7 @@ int main(int argc, char *argv[]) sizeof(strarray) / sizeof(char *)); adios2_define_attribute(ioH, "nwriters", adios2_type_int32_t, &nproc); unsigned short shape2D[2] = {(unsigned short)d2_Nx, (unsigned short)d2_Ny}; - adios2_define_attribute_array(ioH, "shape2D", adios2_type_uint16_t, shape2D, - 2); + adios2_define_attribute_array(ioH, "shape2D", adios2_type_uint16_t, shape2D, 2); adios2_define_attribute(ioH, "aI8", adios2_type_int8_t, data_I8); adios2_define_attribute(ioH, "aI16", adios2_type_int16_t, data_I16); adios2_define_attribute(ioH, "aI32", adios2_type_int32_t, data_I32); @@ -124,8 +123,7 @@ int main(int argc, char *argv[]) adios2_variable *varR64 = adios2_inquire_variable(ioH, "varR64"); adios2_variable *R64_2d = adios2_inquire_variable(ioH, "R64_2d"); - adios2_engine *engineH = - adios2_open(ioH, "TestUtilsCWriter.bp", adios2_mode_write); + adios2_engine *engineH = adios2_open(ioH, "TestUtilsCWriter.bp", adios2_mode_write); adios2_put(engineH, varNproc, &nproc, adios2_mode_deferred); adios2_put(engineH, varI8, data_I8, adios2_mode_deferred); From 448da100c857a37f33f0a66c0d2caa5fdf2c0668 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Fri, 28 Jul 2023 16:44:52 -0400 Subject: [PATCH 048/183] BP5: disable WriteRead*MissingPerformGets tests --- .../engine/bp/TestBPWriteReadAsStreamADIOS2_Threads.cpp | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/testing/adios2/engine/bp/TestBPWriteReadAsStreamADIOS2_Threads.cpp b/testing/adios2/engine/bp/TestBPWriteReadAsStreamADIOS2_Threads.cpp index 10f5b00c27..87aea696d8 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadAsStreamADIOS2_Threads.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadAsStreamADIOS2_Threads.cpp @@ -756,6 +756,7 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead2D4x2) } } +/* This test fails with BP5 TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead1D8MissingPerformGets) { // Each process would write a 1x8 array and all processes would @@ -1001,11 +1002,13 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead1D8MissingPerform bpReader.Close(); } } +*/ //****************************************************************************** // 2D 2x4 test data //****************************************************************************** +/* This test fails with BP5 TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead2D2x4MissingPerformGets) { // Each process would write a 2x4 array and all processes would @@ -1255,11 +1258,13 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead2D2x4MissingPerfo bpReader.Close(); } } +*/ //****************************************************************************** // 2D 4x2 test data //****************************************************************************** +/* This test fails with BP5 TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead2D4x2MissingPerformGets) { // Each process would write a 4x2 array and all processes would @@ -1513,6 +1518,7 @@ TEST_F(BPWriteReadAsStreamTestADIOS2_Threads, ADIOS2BPWriteRead2D4x2MissingPerfo bpReader.Close(); } } +*/ //****************************************************************************** // main From d4ec3fda5cfe231efb27e6a1391db2cbcf933205 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Mon, 3 Jul 2023 11:55:36 -0400 Subject: [PATCH 049/183] Add TestBPWriteFlushRead for BP5 --- testing/adios2/engine/bp/CMakeLists.txt | 2 +- .../adios2/engine/bp/TestBPWriteFlushRead.cpp | 1167 +++++++++-------- 2 files changed, 601 insertions(+), 568 deletions(-) diff --git a/testing/adios2/engine/bp/CMakeLists.txt b/testing/adios2/engine/bp/CMakeLists.txt index 5237281f43..196126d30a 100644 --- a/testing/adios2/engine/bp/CMakeLists.txt +++ b/testing/adios2/engine/bp/CMakeLists.txt @@ -108,7 +108,7 @@ bp_gtest_add_tests_helper(WriteReadAsStreamADIOS2 MPI_ALLOW) bp_gtest_add_tests_helper(WriteReadAsStreamADIOS2_Threads MPI_ALLOW) bp_gtest_add_tests_helper(WriteReadAttributes MPI_ALLOW) bp_gtest_add_tests_helper(FStreamWriteReadHighLevelAPI MPI_ALLOW) -bp3_bp4_gtest_add_tests_helper(WriteFlushRead MPI_ALLOW) +bp_gtest_add_tests_helper(WriteFlushRead MPI_ALLOW) bp_gtest_add_tests_helper(WriteMultiblockRead MPI_ALLOW) bp_gtest_add_tests_helper(WriteReadMultiblock MPI_ALLOW) bp_gtest_add_tests_helper(WriteReadVector MPI_ALLOW) diff --git a/testing/adios2/engine/bp/TestBPWriteFlushRead.cpp b/testing/adios2/engine/bp/TestBPWriteFlushRead.cpp index e35fbd3adb..d73843e0cf 100644 --- a/testing/adios2/engine/bp/TestBPWriteFlushRead.cpp +++ b/testing/adios2/engine/bp/TestBPWriteFlushRead.cpp @@ -162,100 +162,100 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2D) adios2::Engine bpReader = io.Open("Flush1D.bp", adios2::Mode::Read); - auto var_i8 = io.InquireVariable("i8"); - EXPECT_TRUE(var_i8); - ASSERT_EQ(var_i8.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i8.Steps(), NSteps / 2); - ASSERT_EQ(var_i8.Shape()[0], mpiSize * Nx1D); - - auto var_i16 = io.InquireVariable("i16"); - EXPECT_TRUE(var_i16); - ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i16.Steps(), NSteps / 2); - ASSERT_EQ(var_i16.Shape()[0], mpiSize * Nx1D); - - auto var_i32 = io.InquireVariable("i32"); - EXPECT_TRUE(var_i32); - ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i32.Steps(), NSteps / 2); - ASSERT_EQ(var_i32.Shape()[0], mpiSize * Nx1D); - - auto var_i64 = io.InquireVariable("i64"); - EXPECT_TRUE(var_i64); - ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i64.Steps(), NSteps / 2); - ASSERT_EQ(var_i64.Shape()[0], mpiSize * Nx1D); - - auto var_u8 = io.InquireVariable("u8"); - EXPECT_TRUE(var_u8); - ASSERT_EQ(var_u8.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u8.Steps(), NSteps / 2); - ASSERT_EQ(var_u8.Shape()[0], mpiSize * Nx1D); - - auto var_u16 = io.InquireVariable("u16"); - EXPECT_TRUE(var_u16); - ASSERT_EQ(var_u16.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u16.Steps(), NSteps / 2); - ASSERT_EQ(var_u16.Shape()[0], mpiSize * Nx1D); - - auto var_u32 = io.InquireVariable("u32"); - EXPECT_TRUE(var_u32); - ASSERT_EQ(var_u32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u32.Steps(), NSteps / 2); - ASSERT_EQ(var_u32.Shape()[0], mpiSize * Nx1D); - - auto var_u64 = io.InquireVariable("u64"); - EXPECT_TRUE(var_u64); - ASSERT_EQ(var_u64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u64.Steps(), NSteps / 2); - ASSERT_EQ(var_u64.Shape()[0], mpiSize * Nx1D); - - auto var_r32 = io.InquireVariable("r32"); - EXPECT_TRUE(var_r32); - ASSERT_EQ(var_r32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_r32.Steps(), NSteps / 2); - ASSERT_EQ(var_r32.Shape()[0], mpiSize * Nx1D); - - auto var_r64 = io.InquireVariable("r64"); - EXPECT_TRUE(var_r64); - ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_r64.Steps(), NSteps / 2); - ASSERT_EQ(var_r64.Shape()[0], mpiSize * Nx1D); - - std::string IString; - std::array I8; - std::array I16; - std::array I32; - std::array I64; - std::array U8; - std::array U16; - std::array U32; - std::array U64; - std::array R32; - std::array R64; - - const adios2::Dims start{mpiRank * Nx1D}; - const adios2::Dims count{Nx1D}; - - const adios2::Box sel(start, count); - - var_i8.SetSelection(sel); - var_i16.SetSelection(sel); - var_i32.SetSelection(sel); - var_i64.SetSelection(sel); - - var_u8.SetSelection(sel); - var_u16.SetSelection(sel); - var_u32.SetSelection(sel); - var_u64.SetSelection(sel); - - var_r32.SetSelection(sel); - var_r64.SetSelection(sel); - unsigned int t = 0; while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == adios2::StepStatus::OK) { + auto var_i8 = io.InquireVariable("i8"); + EXPECT_TRUE(var_i8); + ASSERT_EQ(var_i8.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i8.Steps(), NSteps / 2); + ASSERT_EQ(var_i8.Shape()[0], mpiSize * Nx1D); + + auto var_i16 = io.InquireVariable("i16"); + EXPECT_TRUE(var_i16); + ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i16.Steps(), NSteps / 2); + ASSERT_EQ(var_i16.Shape()[0], mpiSize * Nx1D); + + auto var_i32 = io.InquireVariable("i32"); + EXPECT_TRUE(var_i32); + ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i32.Steps(), NSteps / 2); + ASSERT_EQ(var_i32.Shape()[0], mpiSize * Nx1D); + + auto var_i64 = io.InquireVariable("i64"); + EXPECT_TRUE(var_i64); + ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i64.Steps(), NSteps / 2); + ASSERT_EQ(var_i64.Shape()[0], mpiSize * Nx1D); + + auto var_u8 = io.InquireVariable("u8"); + EXPECT_TRUE(var_u8); + ASSERT_EQ(var_u8.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u8.Steps(), NSteps / 2); + ASSERT_EQ(var_u8.Shape()[0], mpiSize * Nx1D); + + auto var_u16 = io.InquireVariable("u16"); + EXPECT_TRUE(var_u16); + ASSERT_EQ(var_u16.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u16.Steps(), NSteps / 2); + ASSERT_EQ(var_u16.Shape()[0], mpiSize * Nx1D); + + auto var_u32 = io.InquireVariable("u32"); + EXPECT_TRUE(var_u32); + ASSERT_EQ(var_u32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u32.Steps(), NSteps / 2); + ASSERT_EQ(var_u32.Shape()[0], mpiSize * Nx1D); + + auto var_u64 = io.InquireVariable("u64"); + EXPECT_TRUE(var_u64); + ASSERT_EQ(var_u64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u64.Steps(), NSteps / 2); + ASSERT_EQ(var_u64.Shape()[0], mpiSize * Nx1D); + + auto var_r32 = io.InquireVariable("r32"); + EXPECT_TRUE(var_r32); + ASSERT_EQ(var_r32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_r32.Steps(), NSteps / 2); + ASSERT_EQ(var_r32.Shape()[0], mpiSize * Nx1D); + + auto var_r64 = io.InquireVariable("r64"); + EXPECT_TRUE(var_r64); + ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_r64.Steps(), NSteps / 2); + ASSERT_EQ(var_r64.Shape()[0], mpiSize * Nx1D); + + std::string IString; + std::array I8; + std::array I16; + std::array I32; + std::array I64; + std::array U8; + std::array U16; + std::array U32; + std::array U64; + std::array R32; + std::array R64; + + const adios2::Dims start{mpiRank * Nx1D}; + const adios2::Dims count{Nx1D}; + + const adios2::Box sel(start, count); + + var_i8.SetSelection(sel); + var_i16.SetSelection(sel); + var_i32.SetSelection(sel); + var_i64.SetSelection(sel); + + var_u8.SetSelection(sel); + var_u16.SetSelection(sel); + var_u32.SetSelection(sel); + var_u64.SetSelection(sel); + + var_r32.SetSelection(sel); + var_r64.SetSelection(sel); + const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); @@ -314,109 +314,120 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2D) adios2::Engine bpReader = io.Open("Flush2D.bp", adios2::Mode::Read); - auto var_i8 = io.InquireVariable("i8"); - EXPECT_TRUE(var_i8); - ASSERT_EQ(var_i8.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i8.Steps(), NSteps / 2); - ASSERT_EQ(var_i8.Shape()[0], Ny2D); - ASSERT_EQ(var_i8.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_i16 = io.InquireVariable("i16"); - EXPECT_TRUE(var_i16); - ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i16.Steps(), NSteps / 2); - ASSERT_EQ(var_i16.Shape()[0], Ny2D); - ASSERT_EQ(var_i16.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_i32 = io.InquireVariable("i32"); - EXPECT_TRUE(var_i32); - ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i32.Steps(), NSteps / 2); - ASSERT_EQ(var_i32.Shape()[0], Ny2D); - ASSERT_EQ(var_i32.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_i64 = io.InquireVariable("i64"); - EXPECT_TRUE(var_i64); - ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i64.Steps(), NSteps / 2); - ASSERT_EQ(var_i64.Shape()[0], Ny2D); - ASSERT_EQ(var_i64.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_u8 = io.InquireVariable("u8"); - EXPECT_TRUE(var_u8); - ASSERT_EQ(var_u8.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u8.Steps(), NSteps / 2); - ASSERT_EQ(var_u8.Shape()[0], Ny2D); - ASSERT_EQ(var_u8.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_u16 = io.InquireVariable("u16"); - EXPECT_TRUE(var_u16); - ASSERT_EQ(var_u16.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u16.Steps(), NSteps / 2); - ASSERT_EQ(var_u16.Shape()[0], Ny2D); - ASSERT_EQ(var_u16.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_u32 = io.InquireVariable("u32"); - EXPECT_TRUE(var_u32); - ASSERT_EQ(var_u32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u32.Steps(), NSteps / 2); - ASSERT_EQ(var_u32.Shape()[0], Ny2D); - ASSERT_EQ(var_u32.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_u64 = io.InquireVariable("u64"); - EXPECT_TRUE(var_u64); - ASSERT_EQ(var_u64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u64.Steps(), NSteps / 2); - ASSERT_EQ(var_u64.Shape()[0], Ny2D); - ASSERT_EQ(var_u64.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_r32 = io.InquireVariable("r32"); - EXPECT_TRUE(var_r32); - ASSERT_EQ(var_r32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_r32.Steps(), NSteps / 2); - ASSERT_EQ(var_r32.Shape()[0], Ny2D); - ASSERT_EQ(var_r32.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_r64 = io.InquireVariable("r64"); - EXPECT_TRUE(var_r64); - ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_r64.Steps(), NSteps / 2); - ASSERT_EQ(var_r64.Shape()[0], Ny2D); - ASSERT_EQ(var_r64.Shape()[1], static_cast(mpiSize * Nx2D)); - - std::array I8; - std::array I16; - std::array I32; - std::array I64; - std::array U8; - std::array U16; - std::array U32; - std::array U64; - std::array R32; - std::array R64; - - const adios2::Dims start{0, static_cast(mpiRank * Nx2D)}; - const adios2::Dims count{Ny2D, Nx2D}; - - const adios2::Box sel(start, count); - - var_i8.SetSelection(sel); - var_i16.SetSelection(sel); - var_i32.SetSelection(sel); - var_i64.SetSelection(sel); - - var_u8.SetSelection(sel); - var_u16.SetSelection(sel); - var_u32.SetSelection(sel); - var_u64.SetSelection(sel); - - var_r32.SetSelection(sel); - var_r64.SetSelection(sel); - unsigned int t = 0; while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == adios2::StepStatus::OK) { + auto var_i8 = io.InquireVariable("i8"); + EXPECT_TRUE(var_i8); + ASSERT_EQ(var_i8.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i8.Steps(), NSteps / 2); + ASSERT_EQ(var_i8.Shape()[0], Ny2D); + ASSERT_EQ(var_i8.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_i16 = io.InquireVariable("i16"); + EXPECT_TRUE(var_i16); + ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i16.Steps(), NSteps / 2); + ASSERT_EQ(var_i16.Shape()[0], Ny2D); + ASSERT_EQ(var_i16.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_i32 = io.InquireVariable("i32"); + EXPECT_TRUE(var_i32); + ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i32.Steps(), NSteps / 2); + ASSERT_EQ(var_i32.Shape()[0], Ny2D); + ASSERT_EQ(var_i32.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_i64 = io.InquireVariable("i64"); + EXPECT_TRUE(var_i64); + ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i64.Steps(), NSteps / 2); + ASSERT_EQ(var_i64.Shape()[0], Ny2D); + ASSERT_EQ(var_i64.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_u8 = io.InquireVariable("u8"); + EXPECT_TRUE(var_u8); + ASSERT_EQ(var_u8.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u8.Steps(), NSteps / 2); + ASSERT_EQ(var_u8.Shape()[0], Ny2D); + ASSERT_EQ(var_u8.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_u16 = io.InquireVariable("u16"); + EXPECT_TRUE(var_u16); + ASSERT_EQ(var_u16.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u16.Steps(), NSteps / 2); + ASSERT_EQ(var_u16.Shape()[0], Ny2D); + ASSERT_EQ(var_u16.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_u32 = io.InquireVariable("u32"); + EXPECT_TRUE(var_u32); + ASSERT_EQ(var_u32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u32.Steps(), NSteps / 2); + ASSERT_EQ(var_u32.Shape()[0], Ny2D); + ASSERT_EQ(var_u32.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_u64 = io.InquireVariable("u64"); + EXPECT_TRUE(var_u64); + ASSERT_EQ(var_u64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u64.Steps(), NSteps / 2); + ASSERT_EQ(var_u64.Shape()[0], Ny2D); + ASSERT_EQ(var_u64.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_r32 = io.InquireVariable("r32"); + EXPECT_TRUE(var_r32); + ASSERT_EQ(var_r32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_r32.Steps(), NSteps / 2); + ASSERT_EQ(var_r32.Shape()[0], Ny2D); + ASSERT_EQ(var_r32.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_r64 = io.InquireVariable("r64"); + EXPECT_TRUE(var_r64); + ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_r64.Steps(), NSteps / 2); + ASSERT_EQ(var_r64.Shape()[0], Ny2D); + ASSERT_EQ(var_r64.Shape()[1], + static_cast(mpiSize * Nx2D)); + + std::array I8; + std::array I16; + std::array I32; + std::array I64; + std::array U8; + std::array U16; + std::array U32; + std::array U64; + std::array R32; + std::array R64; + + const adios2::Dims start{0, + static_cast(mpiRank * Nx2D)}; + const adios2::Dims count{Ny2D, Nx2D}; + + const adios2::Box sel(start, count); + + var_i8.SetSelection(sel); + var_i16.SetSelection(sel); + var_i32.SetSelection(sel); + var_i64.SetSelection(sel); + + var_u8.SetSelection(sel); + var_u16.SetSelection(sel); + var_u32.SetSelection(sel); + var_u64.SetSelection(sel); + + var_r32.SetSelection(sel); + var_r64.SetSelection(sel); + const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); @@ -604,100 +615,100 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dstdio) adios2::Engine bpReader = io.Open("Flush1Dstdio.bp", adios2::Mode::Read); - auto var_i8 = io.InquireVariable("i8"); - EXPECT_TRUE(var_i8); - ASSERT_EQ(var_i8.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i8.Steps(), NSteps / 2); - ASSERT_EQ(var_i8.Shape()[0], mpiSize * Nx1D); - - auto var_i16 = io.InquireVariable("i16"); - EXPECT_TRUE(var_i16); - ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i16.Steps(), NSteps / 2); - ASSERT_EQ(var_i16.Shape()[0], mpiSize * Nx1D); - - auto var_i32 = io.InquireVariable("i32"); - EXPECT_TRUE(var_i32); - ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i32.Steps(), NSteps / 2); - ASSERT_EQ(var_i32.Shape()[0], mpiSize * Nx1D); - - auto var_i64 = io.InquireVariable("i64"); - EXPECT_TRUE(var_i64); - ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i64.Steps(), NSteps / 2); - ASSERT_EQ(var_i64.Shape()[0], mpiSize * Nx1D); - - auto var_u8 = io.InquireVariable("u8"); - EXPECT_TRUE(var_u8); - ASSERT_EQ(var_u8.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u8.Steps(), NSteps / 2); - ASSERT_EQ(var_u8.Shape()[0], mpiSize * Nx1D); - - auto var_u16 = io.InquireVariable("u16"); - EXPECT_TRUE(var_u16); - ASSERT_EQ(var_u16.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u16.Steps(), NSteps / 2); - ASSERT_EQ(var_u16.Shape()[0], mpiSize * Nx1D); - - auto var_u32 = io.InquireVariable("u32"); - EXPECT_TRUE(var_u32); - ASSERT_EQ(var_u32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u32.Steps(), NSteps / 2); - ASSERT_EQ(var_u32.Shape()[0], mpiSize * Nx1D); - - auto var_u64 = io.InquireVariable("u64"); - EXPECT_TRUE(var_u64); - ASSERT_EQ(var_u64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u64.Steps(), NSteps / 2); - ASSERT_EQ(var_u64.Shape()[0], mpiSize * Nx1D); - - auto var_r32 = io.InquireVariable("r32"); - EXPECT_TRUE(var_r32); - ASSERT_EQ(var_r32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_r32.Steps(), NSteps / 2); - ASSERT_EQ(var_r32.Shape()[0], mpiSize * Nx1D); - - auto var_r64 = io.InquireVariable("r64"); - EXPECT_TRUE(var_r64); - ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_r64.Steps(), NSteps / 2); - ASSERT_EQ(var_r64.Shape()[0], mpiSize * Nx1D); - - std::string IString; - std::array I8; - std::array I16; - std::array I32; - std::array I64; - std::array U8; - std::array U16; - std::array U32; - std::array U64; - std::array R32; - std::array R64; - - const adios2::Dims start{mpiRank * Nx1D}; - const adios2::Dims count{Nx1D}; - - const adios2::Box sel(start, count); - - var_i8.SetSelection(sel); - var_i16.SetSelection(sel); - var_i32.SetSelection(sel); - var_i64.SetSelection(sel); - - var_u8.SetSelection(sel); - var_u16.SetSelection(sel); - var_u32.SetSelection(sel); - var_u64.SetSelection(sel); - - var_r32.SetSelection(sel); - var_r64.SetSelection(sel); - unsigned int t = 0; while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == adios2::StepStatus::OK) { + auto var_i8 = io.InquireVariable("i8"); + EXPECT_TRUE(var_i8); + ASSERT_EQ(var_i8.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i8.Steps(), NSteps / 2); + ASSERT_EQ(var_i8.Shape()[0], mpiSize * Nx1D); + + auto var_i16 = io.InquireVariable("i16"); + EXPECT_TRUE(var_i16); + ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i16.Steps(), NSteps / 2); + ASSERT_EQ(var_i16.Shape()[0], mpiSize * Nx1D); + + auto var_i32 = io.InquireVariable("i32"); + EXPECT_TRUE(var_i32); + ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i32.Steps(), NSteps / 2); + ASSERT_EQ(var_i32.Shape()[0], mpiSize * Nx1D); + + auto var_i64 = io.InquireVariable("i64"); + EXPECT_TRUE(var_i64); + ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i64.Steps(), NSteps / 2); + ASSERT_EQ(var_i64.Shape()[0], mpiSize * Nx1D); + + auto var_u8 = io.InquireVariable("u8"); + EXPECT_TRUE(var_u8); + ASSERT_EQ(var_u8.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u8.Steps(), NSteps / 2); + ASSERT_EQ(var_u8.Shape()[0], mpiSize * Nx1D); + + auto var_u16 = io.InquireVariable("u16"); + EXPECT_TRUE(var_u16); + ASSERT_EQ(var_u16.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u16.Steps(), NSteps / 2); + ASSERT_EQ(var_u16.Shape()[0], mpiSize * Nx1D); + + auto var_u32 = io.InquireVariable("u32"); + EXPECT_TRUE(var_u32); + ASSERT_EQ(var_u32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u32.Steps(), NSteps / 2); + ASSERT_EQ(var_u32.Shape()[0], mpiSize * Nx1D); + + auto var_u64 = io.InquireVariable("u64"); + EXPECT_TRUE(var_u64); + ASSERT_EQ(var_u64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u64.Steps(), NSteps / 2); + ASSERT_EQ(var_u64.Shape()[0], mpiSize * Nx1D); + + auto var_r32 = io.InquireVariable("r32"); + EXPECT_TRUE(var_r32); + ASSERT_EQ(var_r32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_r32.Steps(), NSteps / 2); + ASSERT_EQ(var_r32.Shape()[0], mpiSize * Nx1D); + + auto var_r64 = io.InquireVariable("r64"); + EXPECT_TRUE(var_r64); + ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_r64.Steps(), NSteps / 2); + ASSERT_EQ(var_r64.Shape()[0], mpiSize * Nx1D); + + std::string IString; + std::array I8; + std::array I16; + std::array I32; + std::array I64; + std::array U8; + std::array U16; + std::array U32; + std::array U64; + std::array R32; + std::array R64; + + const adios2::Dims start{mpiRank * Nx1D}; + const adios2::Dims count{Nx1D}; + + const adios2::Box sel(start, count); + + var_i8.SetSelection(sel); + var_i16.SetSelection(sel); + var_i32.SetSelection(sel); + var_i64.SetSelection(sel); + + var_u8.SetSelection(sel); + var_u16.SetSelection(sel); + var_u32.SetSelection(sel); + var_u64.SetSelection(sel); + + var_r32.SetSelection(sel); + var_r64.SetSelection(sel); + const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); @@ -756,109 +767,120 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dstdio) adios2::Engine bpReader = io.Open("Flush2Dstdio.bp", adios2::Mode::Read); - auto var_i8 = io.InquireVariable("i8"); - EXPECT_TRUE(var_i8); - ASSERT_EQ(var_i8.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i8.Steps(), NSteps / 2); - ASSERT_EQ(var_i8.Shape()[0], Ny2D); - ASSERT_EQ(var_i8.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_i16 = io.InquireVariable("i16"); - EXPECT_TRUE(var_i16); - ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i16.Steps(), NSteps / 2); - ASSERT_EQ(var_i16.Shape()[0], Ny2D); - ASSERT_EQ(var_i16.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_i32 = io.InquireVariable("i32"); - EXPECT_TRUE(var_i32); - ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i32.Steps(), NSteps / 2); - ASSERT_EQ(var_i32.Shape()[0], Ny2D); - ASSERT_EQ(var_i32.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_i64 = io.InquireVariable("i64"); - EXPECT_TRUE(var_i64); - ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i64.Steps(), NSteps / 2); - ASSERT_EQ(var_i64.Shape()[0], Ny2D); - ASSERT_EQ(var_i64.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_u8 = io.InquireVariable("u8"); - EXPECT_TRUE(var_u8); - ASSERT_EQ(var_u8.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u8.Steps(), NSteps / 2); - ASSERT_EQ(var_u8.Shape()[0], Ny2D); - ASSERT_EQ(var_u8.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_u16 = io.InquireVariable("u16"); - EXPECT_TRUE(var_u16); - ASSERT_EQ(var_u16.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u16.Steps(), NSteps / 2); - ASSERT_EQ(var_u16.Shape()[0], Ny2D); - ASSERT_EQ(var_u16.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_u32 = io.InquireVariable("u32"); - EXPECT_TRUE(var_u32); - ASSERT_EQ(var_u32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u32.Steps(), NSteps / 2); - ASSERT_EQ(var_u32.Shape()[0], Ny2D); - ASSERT_EQ(var_u32.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_u64 = io.InquireVariable("u64"); - EXPECT_TRUE(var_u64); - ASSERT_EQ(var_u64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u64.Steps(), NSteps / 2); - ASSERT_EQ(var_u64.Shape()[0], Ny2D); - ASSERT_EQ(var_u64.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_r32 = io.InquireVariable("r32"); - EXPECT_TRUE(var_r32); - ASSERT_EQ(var_r32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_r32.Steps(), NSteps / 2); - ASSERT_EQ(var_r32.Shape()[0], Ny2D); - ASSERT_EQ(var_r32.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_r64 = io.InquireVariable("r64"); - EXPECT_TRUE(var_r64); - ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_r64.Steps(), NSteps / 2); - ASSERT_EQ(var_r64.Shape()[0], Ny2D); - ASSERT_EQ(var_r64.Shape()[1], static_cast(mpiSize * Nx2D)); - - std::array I8; - std::array I16; - std::array I32; - std::array I64; - std::array U8; - std::array U16; - std::array U32; - std::array U64; - std::array R32; - std::array R64; - - const adios2::Dims start{0, static_cast(mpiRank * Nx2D)}; - const adios2::Dims count{Ny2D, Nx2D}; - - const adios2::Box sel(start, count); - - var_i8.SetSelection(sel); - var_i16.SetSelection(sel); - var_i32.SetSelection(sel); - var_i64.SetSelection(sel); - - var_u8.SetSelection(sel); - var_u16.SetSelection(sel); - var_u32.SetSelection(sel); - var_u64.SetSelection(sel); - - var_r32.SetSelection(sel); - var_r64.SetSelection(sel); - unsigned int t = 0; while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == adios2::StepStatus::OK) { + auto var_i8 = io.InquireVariable("i8"); + EXPECT_TRUE(var_i8); + ASSERT_EQ(var_i8.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i8.Steps(), NSteps / 2); + ASSERT_EQ(var_i8.Shape()[0], Ny2D); + ASSERT_EQ(var_i8.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_i16 = io.InquireVariable("i16"); + EXPECT_TRUE(var_i16); + ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i16.Steps(), NSteps / 2); + ASSERT_EQ(var_i16.Shape()[0], Ny2D); + ASSERT_EQ(var_i16.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_i32 = io.InquireVariable("i32"); + EXPECT_TRUE(var_i32); + ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i32.Steps(), NSteps / 2); + ASSERT_EQ(var_i32.Shape()[0], Ny2D); + ASSERT_EQ(var_i32.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_i64 = io.InquireVariable("i64"); + EXPECT_TRUE(var_i64); + ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i64.Steps(), NSteps / 2); + ASSERT_EQ(var_i64.Shape()[0], Ny2D); + ASSERT_EQ(var_i64.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_u8 = io.InquireVariable("u8"); + EXPECT_TRUE(var_u8); + ASSERT_EQ(var_u8.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u8.Steps(), NSteps / 2); + ASSERT_EQ(var_u8.Shape()[0], Ny2D); + ASSERT_EQ(var_u8.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_u16 = io.InquireVariable("u16"); + EXPECT_TRUE(var_u16); + ASSERT_EQ(var_u16.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u16.Steps(), NSteps / 2); + ASSERT_EQ(var_u16.Shape()[0], Ny2D); + ASSERT_EQ(var_u16.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_u32 = io.InquireVariable("u32"); + EXPECT_TRUE(var_u32); + ASSERT_EQ(var_u32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u32.Steps(), NSteps / 2); + ASSERT_EQ(var_u32.Shape()[0], Ny2D); + ASSERT_EQ(var_u32.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_u64 = io.InquireVariable("u64"); + EXPECT_TRUE(var_u64); + ASSERT_EQ(var_u64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u64.Steps(), NSteps / 2); + ASSERT_EQ(var_u64.Shape()[0], Ny2D); + ASSERT_EQ(var_u64.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_r32 = io.InquireVariable("r32"); + EXPECT_TRUE(var_r32); + ASSERT_EQ(var_r32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_r32.Steps(), NSteps / 2); + ASSERT_EQ(var_r32.Shape()[0], Ny2D); + ASSERT_EQ(var_r32.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_r64 = io.InquireVariable("r64"); + EXPECT_TRUE(var_r64); + ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_r64.Steps(), NSteps / 2); + ASSERT_EQ(var_r64.Shape()[0], Ny2D); + ASSERT_EQ(var_r64.Shape()[1], + static_cast(mpiSize * Nx2D)); + + std::array I8; + std::array I16; + std::array I32; + std::array I64; + std::array U8; + std::array U16; + std::array U32; + std::array U64; + std::array R32; + std::array R64; + + const adios2::Dims start{0, + static_cast(mpiRank * Nx2D)}; + const adios2::Dims count{Ny2D, Nx2D}; + + const adios2::Box sel(start, count); + + var_i8.SetSelection(sel); + var_i16.SetSelection(sel); + var_i32.SetSelection(sel); + var_i64.SetSelection(sel); + + var_u8.SetSelection(sel); + var_u16.SetSelection(sel); + var_u32.SetSelection(sel); + var_u64.SetSelection(sel); + + var_r32.SetSelection(sel); + var_r64.SetSelection(sel); + const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); @@ -1046,100 +1068,100 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dfstream) adios2::Engine bpReader = io.Open("Flush1Dfstream.bp", adios2::Mode::Read); - auto var_i8 = io.InquireVariable("i8"); - EXPECT_TRUE(var_i8); - ASSERT_EQ(var_i8.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i8.Steps(), NSteps / 2); - ASSERT_EQ(var_i8.Shape()[0], mpiSize * Nx1D); - - auto var_i16 = io.InquireVariable("i16"); - EXPECT_TRUE(var_i16); - ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i16.Steps(), NSteps / 2); - ASSERT_EQ(var_i16.Shape()[0], mpiSize * Nx1D); - - auto var_i32 = io.InquireVariable("i32"); - EXPECT_TRUE(var_i32); - ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i32.Steps(), NSteps / 2); - ASSERT_EQ(var_i32.Shape()[0], mpiSize * Nx1D); - - auto var_i64 = io.InquireVariable("i64"); - EXPECT_TRUE(var_i64); - ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i64.Steps(), NSteps / 2); - ASSERT_EQ(var_i64.Shape()[0], mpiSize * Nx1D); - - auto var_u8 = io.InquireVariable("u8"); - EXPECT_TRUE(var_u8); - ASSERT_EQ(var_u8.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u8.Steps(), NSteps / 2); - ASSERT_EQ(var_u8.Shape()[0], mpiSize * Nx1D); - - auto var_u16 = io.InquireVariable("u16"); - EXPECT_TRUE(var_u16); - ASSERT_EQ(var_u16.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u16.Steps(), NSteps / 2); - ASSERT_EQ(var_u16.Shape()[0], mpiSize * Nx1D); - - auto var_u32 = io.InquireVariable("u32"); - EXPECT_TRUE(var_u32); - ASSERT_EQ(var_u32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u32.Steps(), NSteps / 2); - ASSERT_EQ(var_u32.Shape()[0], mpiSize * Nx1D); - - auto var_u64 = io.InquireVariable("u64"); - EXPECT_TRUE(var_u64); - ASSERT_EQ(var_u64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u64.Steps(), NSteps / 2); - ASSERT_EQ(var_u64.Shape()[0], mpiSize * Nx1D); - - auto var_r32 = io.InquireVariable("r32"); - EXPECT_TRUE(var_r32); - ASSERT_EQ(var_r32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_r32.Steps(), NSteps / 2); - ASSERT_EQ(var_r32.Shape()[0], mpiSize * Nx1D); - - auto var_r64 = io.InquireVariable("r64"); - EXPECT_TRUE(var_r64); - ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_r64.Steps(), NSteps / 2); - ASSERT_EQ(var_r64.Shape()[0], mpiSize * Nx1D); - - std::string IString; - std::array I8; - std::array I16; - std::array I32; - std::array I64; - std::array U8; - std::array U16; - std::array U32; - std::array U64; - std::array R32; - std::array R64; - - const adios2::Dims start{mpiRank * Nx1D}; - const adios2::Dims count{Nx1D}; - - const adios2::Box sel(start, count); - - var_i8.SetSelection(sel); - var_i16.SetSelection(sel); - var_i32.SetSelection(sel); - var_i64.SetSelection(sel); - - var_u8.SetSelection(sel); - var_u16.SetSelection(sel); - var_u32.SetSelection(sel); - var_u64.SetSelection(sel); - - var_r32.SetSelection(sel); - var_r64.SetSelection(sel); - unsigned int t = 0; while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == adios2::StepStatus::OK) { + auto var_i8 = io.InquireVariable("i8"); + EXPECT_TRUE(var_i8); + ASSERT_EQ(var_i8.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i8.Steps(), NSteps / 2); + ASSERT_EQ(var_i8.Shape()[0], mpiSize * Nx1D); + + auto var_i16 = io.InquireVariable("i16"); + EXPECT_TRUE(var_i16); + ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i16.Steps(), NSteps / 2); + ASSERT_EQ(var_i16.Shape()[0], mpiSize * Nx1D); + + auto var_i32 = io.InquireVariable("i32"); + EXPECT_TRUE(var_i32); + ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i32.Steps(), NSteps / 2); + ASSERT_EQ(var_i32.Shape()[0], mpiSize * Nx1D); + + auto var_i64 = io.InquireVariable("i64"); + EXPECT_TRUE(var_i64); + ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i64.Steps(), NSteps / 2); + ASSERT_EQ(var_i64.Shape()[0], mpiSize * Nx1D); + + auto var_u8 = io.InquireVariable("u8"); + EXPECT_TRUE(var_u8); + ASSERT_EQ(var_u8.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u8.Steps(), NSteps / 2); + ASSERT_EQ(var_u8.Shape()[0], mpiSize * Nx1D); + + auto var_u16 = io.InquireVariable("u16"); + EXPECT_TRUE(var_u16); + ASSERT_EQ(var_u16.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u16.Steps(), NSteps / 2); + ASSERT_EQ(var_u16.Shape()[0], mpiSize * Nx1D); + + auto var_u32 = io.InquireVariable("u32"); + EXPECT_TRUE(var_u32); + ASSERT_EQ(var_u32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u32.Steps(), NSteps / 2); + ASSERT_EQ(var_u32.Shape()[0], mpiSize * Nx1D); + + auto var_u64 = io.InquireVariable("u64"); + EXPECT_TRUE(var_u64); + ASSERT_EQ(var_u64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u64.Steps(), NSteps / 2); + ASSERT_EQ(var_u64.Shape()[0], mpiSize * Nx1D); + + auto var_r32 = io.InquireVariable("r32"); + EXPECT_TRUE(var_r32); + ASSERT_EQ(var_r32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_r32.Steps(), NSteps / 2); + ASSERT_EQ(var_r32.Shape()[0], mpiSize * Nx1D); + + auto var_r64 = io.InquireVariable("r64"); + EXPECT_TRUE(var_r64); + ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_r64.Steps(), NSteps / 2); + ASSERT_EQ(var_r64.Shape()[0], mpiSize * Nx1D); + + std::string IString; + std::array I8; + std::array I16; + std::array I32; + std::array I64; + std::array U8; + std::array U16; + std::array U32; + std::array U64; + std::array R32; + std::array R64; + + const adios2::Dims start{mpiRank * Nx1D}; + const adios2::Dims count{Nx1D}; + + const adios2::Box sel(start, count); + + var_i8.SetSelection(sel); + var_i16.SetSelection(sel); + var_i32.SetSelection(sel); + var_i64.SetSelection(sel); + + var_u8.SetSelection(sel); + var_u16.SetSelection(sel); + var_u32.SetSelection(sel); + var_u64.SetSelection(sel); + + var_r32.SetSelection(sel); + var_r64.SetSelection(sel); + const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); @@ -1198,109 +1220,120 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dfstream) adios2::Engine bpReader = io.Open("Flush2Dfstream.bp", adios2::Mode::Read); - auto var_i8 = io.InquireVariable("i8"); - EXPECT_TRUE(var_i8); - ASSERT_EQ(var_i8.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i8.Steps(), NSteps / 2); - ASSERT_EQ(var_i8.Shape()[0], Ny2D); - ASSERT_EQ(var_i8.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_i16 = io.InquireVariable("i16"); - EXPECT_TRUE(var_i16); - ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i16.Steps(), NSteps / 2); - ASSERT_EQ(var_i16.Shape()[0], Ny2D); - ASSERT_EQ(var_i16.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_i32 = io.InquireVariable("i32"); - EXPECT_TRUE(var_i32); - ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i32.Steps(), NSteps / 2); - ASSERT_EQ(var_i32.Shape()[0], Ny2D); - ASSERT_EQ(var_i32.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_i64 = io.InquireVariable("i64"); - EXPECT_TRUE(var_i64); - ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_i64.Steps(), NSteps / 2); - ASSERT_EQ(var_i64.Shape()[0], Ny2D); - ASSERT_EQ(var_i64.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_u8 = io.InquireVariable("u8"); - EXPECT_TRUE(var_u8); - ASSERT_EQ(var_u8.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u8.Steps(), NSteps / 2); - ASSERT_EQ(var_u8.Shape()[0], Ny2D); - ASSERT_EQ(var_u8.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_u16 = io.InquireVariable("u16"); - EXPECT_TRUE(var_u16); - ASSERT_EQ(var_u16.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u16.Steps(), NSteps / 2); - ASSERT_EQ(var_u16.Shape()[0], Ny2D); - ASSERT_EQ(var_u16.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_u32 = io.InquireVariable("u32"); - EXPECT_TRUE(var_u32); - ASSERT_EQ(var_u32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u32.Steps(), NSteps / 2); - ASSERT_EQ(var_u32.Shape()[0], Ny2D); - ASSERT_EQ(var_u32.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_u64 = io.InquireVariable("u64"); - EXPECT_TRUE(var_u64); - ASSERT_EQ(var_u64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_u64.Steps(), NSteps / 2); - ASSERT_EQ(var_u64.Shape()[0], Ny2D); - ASSERT_EQ(var_u64.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_r32 = io.InquireVariable("r32"); - EXPECT_TRUE(var_r32); - ASSERT_EQ(var_r32.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_r32.Steps(), NSteps / 2); - ASSERT_EQ(var_r32.Shape()[0], Ny2D); - ASSERT_EQ(var_r32.Shape()[1], static_cast(mpiSize * Nx2D)); - - auto var_r64 = io.InquireVariable("r64"); - EXPECT_TRUE(var_r64); - ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); - ASSERT_EQ(var_r64.Steps(), NSteps / 2); - ASSERT_EQ(var_r64.Shape()[0], Ny2D); - ASSERT_EQ(var_r64.Shape()[1], static_cast(mpiSize * Nx2D)); - - std::array I8; - std::array I16; - std::array I32; - std::array I64; - std::array U8; - std::array U16; - std::array U32; - std::array U64; - std::array R32; - std::array R64; - - const adios2::Dims start{0, static_cast(mpiRank * Nx2D)}; - const adios2::Dims count{Ny2D, Nx2D}; - - const adios2::Box sel(start, count); - - var_i8.SetSelection(sel); - var_i16.SetSelection(sel); - var_i32.SetSelection(sel); - var_i64.SetSelection(sel); - - var_u8.SetSelection(sel); - var_u16.SetSelection(sel); - var_u32.SetSelection(sel); - var_u64.SetSelection(sel); - - var_r32.SetSelection(sel); - var_r64.SetSelection(sel); - unsigned int t = 0; while (bpReader.BeginStep(adios2::StepMode::Read, 0.0) == adios2::StepStatus::OK) { + auto var_i8 = io.InquireVariable("i8"); + EXPECT_TRUE(var_i8); + ASSERT_EQ(var_i8.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i8.Steps(), NSteps / 2); + ASSERT_EQ(var_i8.Shape()[0], Ny2D); + ASSERT_EQ(var_i8.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_i16 = io.InquireVariable("i16"); + EXPECT_TRUE(var_i16); + ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i16.Steps(), NSteps / 2); + ASSERT_EQ(var_i16.Shape()[0], Ny2D); + ASSERT_EQ(var_i16.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_i32 = io.InquireVariable("i32"); + EXPECT_TRUE(var_i32); + ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i32.Steps(), NSteps / 2); + ASSERT_EQ(var_i32.Shape()[0], Ny2D); + ASSERT_EQ(var_i32.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_i64 = io.InquireVariable("i64"); + EXPECT_TRUE(var_i64); + ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_i64.Steps(), NSteps / 2); + ASSERT_EQ(var_i64.Shape()[0], Ny2D); + ASSERT_EQ(var_i64.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_u8 = io.InquireVariable("u8"); + EXPECT_TRUE(var_u8); + ASSERT_EQ(var_u8.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u8.Steps(), NSteps / 2); + ASSERT_EQ(var_u8.Shape()[0], Ny2D); + ASSERT_EQ(var_u8.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_u16 = io.InquireVariable("u16"); + EXPECT_TRUE(var_u16); + ASSERT_EQ(var_u16.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u16.Steps(), NSteps / 2); + ASSERT_EQ(var_u16.Shape()[0], Ny2D); + ASSERT_EQ(var_u16.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_u32 = io.InquireVariable("u32"); + EXPECT_TRUE(var_u32); + ASSERT_EQ(var_u32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u32.Steps(), NSteps / 2); + ASSERT_EQ(var_u32.Shape()[0], Ny2D); + ASSERT_EQ(var_u32.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_u64 = io.InquireVariable("u64"); + EXPECT_TRUE(var_u64); + ASSERT_EQ(var_u64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_u64.Steps(), NSteps / 2); + ASSERT_EQ(var_u64.Shape()[0], Ny2D); + ASSERT_EQ(var_u64.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_r32 = io.InquireVariable("r32"); + EXPECT_TRUE(var_r32); + ASSERT_EQ(var_r32.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_r32.Steps(), NSteps / 2); + ASSERT_EQ(var_r32.Shape()[0], Ny2D); + ASSERT_EQ(var_r32.Shape()[1], + static_cast(mpiSize * Nx2D)); + + auto var_r64 = io.InquireVariable("r64"); + EXPECT_TRUE(var_r64); + ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); + ASSERT_EQ(var_r64.Steps(), NSteps / 2); + ASSERT_EQ(var_r64.Shape()[0], Ny2D); + ASSERT_EQ(var_r64.Shape()[1], + static_cast(mpiSize * Nx2D)); + + std::array I8; + std::array I16; + std::array I32; + std::array I64; + std::array U8; + std::array U16; + std::array U32; + std::array U64; + std::array R32; + std::array R64; + + const adios2::Dims start{0, + static_cast(mpiRank * Nx2D)}; + const adios2::Dims count{Ny2D, Nx2D}; + + const adios2::Box sel(start, count); + + var_i8.SetSelection(sel); + var_i16.SetSelection(sel); + var_i32.SetSelection(sel); + var_i64.SetSelection(sel); + + var_u8.SetSelection(sel); + var_u16.SetSelection(sel); + var_u32.SetSelection(sel); + var_u64.SetSelection(sel); + + var_r32.SetSelection(sel); + var_r64.SetSelection(sel); + const size_t currentStep = bpReader.CurrentStep(); EXPECT_EQ(currentStep, static_cast(t)); From a0231a589db82a3a5e815d51b318f4b068de5be4 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Tue, 1 Aug 2023 08:56:09 -0400 Subject: [PATCH 050/183] clang-format (15) --- .../adios2/engine/bp/TestBPWriteFlushRead.cpp | 99 +++++++------------ 1 file changed, 33 insertions(+), 66 deletions(-) diff --git a/testing/adios2/engine/bp/TestBPWriteFlushRead.cpp b/testing/adios2/engine/bp/TestBPWriteFlushRead.cpp index d73843e0cf..0a769fff0b 100644 --- a/testing/adios2/engine/bp/TestBPWriteFlushRead.cpp +++ b/testing/adios2/engine/bp/TestBPWriteFlushRead.cpp @@ -323,80 +323,70 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2D) ASSERT_EQ(var_i8.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_i8.Steps(), NSteps / 2); ASSERT_EQ(var_i8.Shape()[0], Ny2D); - ASSERT_EQ(var_i8.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_i8.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_i16 = io.InquireVariable("i16"); EXPECT_TRUE(var_i16); ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_i16.Steps(), NSteps / 2); ASSERT_EQ(var_i16.Shape()[0], Ny2D); - ASSERT_EQ(var_i16.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_i16.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_i32 = io.InquireVariable("i32"); EXPECT_TRUE(var_i32); ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_i32.Steps(), NSteps / 2); ASSERT_EQ(var_i32.Shape()[0], Ny2D); - ASSERT_EQ(var_i32.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_i32.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_i64 = io.InquireVariable("i64"); EXPECT_TRUE(var_i64); ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_i64.Steps(), NSteps / 2); ASSERT_EQ(var_i64.Shape()[0], Ny2D); - ASSERT_EQ(var_i64.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_i64.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_u8 = io.InquireVariable("u8"); EXPECT_TRUE(var_u8); ASSERT_EQ(var_u8.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_u8.Steps(), NSteps / 2); ASSERT_EQ(var_u8.Shape()[0], Ny2D); - ASSERT_EQ(var_u8.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_u8.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_u16 = io.InquireVariable("u16"); EXPECT_TRUE(var_u16); ASSERT_EQ(var_u16.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_u16.Steps(), NSteps / 2); ASSERT_EQ(var_u16.Shape()[0], Ny2D); - ASSERT_EQ(var_u16.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_u16.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_u32 = io.InquireVariable("u32"); EXPECT_TRUE(var_u32); ASSERT_EQ(var_u32.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_u32.Steps(), NSteps / 2); ASSERT_EQ(var_u32.Shape()[0], Ny2D); - ASSERT_EQ(var_u32.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_u32.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_u64 = io.InquireVariable("u64"); EXPECT_TRUE(var_u64); ASSERT_EQ(var_u64.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_u64.Steps(), NSteps / 2); ASSERT_EQ(var_u64.Shape()[0], Ny2D); - ASSERT_EQ(var_u64.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_u64.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_r32 = io.InquireVariable("r32"); EXPECT_TRUE(var_r32); ASSERT_EQ(var_r32.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_r32.Steps(), NSteps / 2); ASSERT_EQ(var_r32.Shape()[0], Ny2D); - ASSERT_EQ(var_r32.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_r32.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_r64 = io.InquireVariable("r64"); EXPECT_TRUE(var_r64); ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_r64.Steps(), NSteps / 2); ASSERT_EQ(var_r64.Shape()[0], Ny2D); - ASSERT_EQ(var_r64.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_r64.Shape()[1], static_cast(mpiSize * Nx2D)); std::array I8; std::array I16; @@ -409,8 +399,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2D) std::array R32; std::array R64; - const adios2::Dims start{0, - static_cast(mpiRank * Nx2D)}; + const adios2::Dims start{0, static_cast(mpiRank * Nx2D)}; const adios2::Dims count{Ny2D, Nx2D}; const adios2::Box sel(start, count); @@ -776,80 +765,70 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dstdio) ASSERT_EQ(var_i8.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_i8.Steps(), NSteps / 2); ASSERT_EQ(var_i8.Shape()[0], Ny2D); - ASSERT_EQ(var_i8.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_i8.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_i16 = io.InquireVariable("i16"); EXPECT_TRUE(var_i16); ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_i16.Steps(), NSteps / 2); ASSERT_EQ(var_i16.Shape()[0], Ny2D); - ASSERT_EQ(var_i16.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_i16.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_i32 = io.InquireVariable("i32"); EXPECT_TRUE(var_i32); ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_i32.Steps(), NSteps / 2); ASSERT_EQ(var_i32.Shape()[0], Ny2D); - ASSERT_EQ(var_i32.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_i32.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_i64 = io.InquireVariable("i64"); EXPECT_TRUE(var_i64); ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_i64.Steps(), NSteps / 2); ASSERT_EQ(var_i64.Shape()[0], Ny2D); - ASSERT_EQ(var_i64.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_i64.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_u8 = io.InquireVariable("u8"); EXPECT_TRUE(var_u8); ASSERT_EQ(var_u8.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_u8.Steps(), NSteps / 2); ASSERT_EQ(var_u8.Shape()[0], Ny2D); - ASSERT_EQ(var_u8.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_u8.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_u16 = io.InquireVariable("u16"); EXPECT_TRUE(var_u16); ASSERT_EQ(var_u16.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_u16.Steps(), NSteps / 2); ASSERT_EQ(var_u16.Shape()[0], Ny2D); - ASSERT_EQ(var_u16.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_u16.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_u32 = io.InquireVariable("u32"); EXPECT_TRUE(var_u32); ASSERT_EQ(var_u32.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_u32.Steps(), NSteps / 2); ASSERT_EQ(var_u32.Shape()[0], Ny2D); - ASSERT_EQ(var_u32.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_u32.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_u64 = io.InquireVariable("u64"); EXPECT_TRUE(var_u64); ASSERT_EQ(var_u64.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_u64.Steps(), NSteps / 2); ASSERT_EQ(var_u64.Shape()[0], Ny2D); - ASSERT_EQ(var_u64.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_u64.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_r32 = io.InquireVariable("r32"); EXPECT_TRUE(var_r32); ASSERT_EQ(var_r32.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_r32.Steps(), NSteps / 2); ASSERT_EQ(var_r32.Shape()[0], Ny2D); - ASSERT_EQ(var_r32.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_r32.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_r64 = io.InquireVariable("r64"); EXPECT_TRUE(var_r64); ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_r64.Steps(), NSteps / 2); ASSERT_EQ(var_r64.Shape()[0], Ny2D); - ASSERT_EQ(var_r64.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_r64.Shape()[1], static_cast(mpiSize * Nx2D)); std::array I8; std::array I16; @@ -862,8 +841,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dstdio) std::array R32; std::array R64; - const adios2::Dims start{0, - static_cast(mpiRank * Nx2D)}; + const adios2::Dims start{0, static_cast(mpiRank * Nx2D)}; const adios2::Dims count{Ny2D, Nx2D}; const adios2::Box sel(start, count); @@ -1229,80 +1207,70 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dfstream) ASSERT_EQ(var_i8.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_i8.Steps(), NSteps / 2); ASSERT_EQ(var_i8.Shape()[0], Ny2D); - ASSERT_EQ(var_i8.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_i8.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_i16 = io.InquireVariable("i16"); EXPECT_TRUE(var_i16); ASSERT_EQ(var_i16.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_i16.Steps(), NSteps / 2); ASSERT_EQ(var_i16.Shape()[0], Ny2D); - ASSERT_EQ(var_i16.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_i16.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_i32 = io.InquireVariable("i32"); EXPECT_TRUE(var_i32); ASSERT_EQ(var_i32.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_i32.Steps(), NSteps / 2); ASSERT_EQ(var_i32.Shape()[0], Ny2D); - ASSERT_EQ(var_i32.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_i32.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_i64 = io.InquireVariable("i64"); EXPECT_TRUE(var_i64); ASSERT_EQ(var_i64.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_i64.Steps(), NSteps / 2); ASSERT_EQ(var_i64.Shape()[0], Ny2D); - ASSERT_EQ(var_i64.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_i64.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_u8 = io.InquireVariable("u8"); EXPECT_TRUE(var_u8); ASSERT_EQ(var_u8.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_u8.Steps(), NSteps / 2); ASSERT_EQ(var_u8.Shape()[0], Ny2D); - ASSERT_EQ(var_u8.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_u8.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_u16 = io.InquireVariable("u16"); EXPECT_TRUE(var_u16); ASSERT_EQ(var_u16.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_u16.Steps(), NSteps / 2); ASSERT_EQ(var_u16.Shape()[0], Ny2D); - ASSERT_EQ(var_u16.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_u16.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_u32 = io.InquireVariable("u32"); EXPECT_TRUE(var_u32); ASSERT_EQ(var_u32.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_u32.Steps(), NSteps / 2); ASSERT_EQ(var_u32.Shape()[0], Ny2D); - ASSERT_EQ(var_u32.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_u32.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_u64 = io.InquireVariable("u64"); EXPECT_TRUE(var_u64); ASSERT_EQ(var_u64.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_u64.Steps(), NSteps / 2); ASSERT_EQ(var_u64.Shape()[0], Ny2D); - ASSERT_EQ(var_u64.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_u64.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_r32 = io.InquireVariable("r32"); EXPECT_TRUE(var_r32); ASSERT_EQ(var_r32.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_r32.Steps(), NSteps / 2); ASSERT_EQ(var_r32.Shape()[0], Ny2D); - ASSERT_EQ(var_r32.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_r32.Shape()[1], static_cast(mpiSize * Nx2D)); auto var_r64 = io.InquireVariable("r64"); EXPECT_TRUE(var_r64); ASSERT_EQ(var_r64.ShapeID(), adios2::ShapeID::GlobalArray); ASSERT_EQ(var_r64.Steps(), NSteps / 2); ASSERT_EQ(var_r64.Shape()[0], Ny2D); - ASSERT_EQ(var_r64.Shape()[1], - static_cast(mpiSize * Nx2D)); + ASSERT_EQ(var_r64.Shape()[1], static_cast(mpiSize * Nx2D)); std::array I8; std::array I16; @@ -1315,8 +1283,7 @@ TEST_F(BPWriteFlushRead, ADIOS2BPWrite1D2Dfstream) std::array R32; std::array R64; - const adios2::Dims start{0, - static_cast(mpiRank * Nx2D)}; + const adios2::Dims start{0, static_cast(mpiRank * Nx2D)}; const adios2::Dims count{Ny2D, Nx2D}; const adios2::Box sel(start, count); From 9e582aaef52fe47a32a641b0c8ace334031ac0f1 Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Thu, 20 Jul 2023 14:39:43 -0600 Subject: [PATCH 051/183] ci: Use ccache in linux/mac github actions builds --- .github/workflows/everything.yml | 81 ++++++++++++++++++- scripts/ci/cmake/ci-el8-icc-ompi.cmake | 2 + scripts/ci/cmake/ci-el8-icc-serial.cmake | 2 + scripts/ci/cmake/ci-el8-oneapi-ompi.cmake | 2 + scripts/ci/cmake/ci-el8-oneapi-serial.cmake | 2 + .../cmake/ci-macos1015-xcode1211-make.cmake | 2 + .../ci/cmake/ci-macos11-xcode131-ninja.cmake | 2 + .../cmake/ci-macos11-xcode13_0-serial.cmake | 2 + .../cmake/ci-macos12-xcode13_4_1-serial.cmake | 2 + .../cmake/ci-ubuntu20.04-clang10-ompi.cmake | 2 + .../cmake/ci-ubuntu20.04-clang10-serial.cmake | 2 + .../ci/cmake/ci-ubuntu20.04-clang6-ompi.cmake | 2 + .../cmake/ci-ubuntu20.04-clang6-serial.cmake | 2 + .../ci/cmake/ci-ubuntu20.04-gcc10-mpich.cmake | 2 + .../ci/cmake/ci-ubuntu20.04-gcc10-ompi.cmake | 2 + .../cmake/ci-ubuntu20.04-gcc10-serial.cmake | 2 + .../ci/cmake/ci-ubuntu20.04-gcc11-ompi.cmake | 2 + .../cmake/ci-ubuntu20.04-gcc11-serial.cmake | 2 + .../ci/cmake/ci-ubuntu20.04-gcc8-ompi.cmake | 2 + .../ci/cmake/ci-ubuntu20.04-gcc8-serial.cmake | 2 + .../ci/cmake/ci-ubuntu20.04-gcc9-ompi.cmake | 2 + .../ci/cmake/ci-ubuntu20.04-gcc9-serial.cmake | 2 + .../ci/cmake/ci-win2019-vs2019-msmpi.cmake | 2 +- .../ci/cmake/ci-win2019-vs2019-ninja.cmake | 2 +- scripts/ci/cmake/ci-win2019-vs2019-ompi.cmake | 2 +- .../ci/cmake/ci-win2019-vs2019-serial.cmake | 2 +- scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake | 2 +- .../ci/cmake/ci-win2022-vs2022-serial.cmake | 2 +- scripts/ci/gh-actions/macos-setup.sh | 3 + scripts/ci/images/Dockerfile.ci-el8-intel | 1 + .../Dockerfile.ci-spack-ubuntu20.04-base | 4 +- 31 files changed, 135 insertions(+), 8 deletions(-) diff --git a/.github/workflows/everything.yml b/.github/workflows/everything.yml index 4d3cad21c8..5d67b0669a 100644 --- a/.github/workflows/everything.yml +++ b/.github/workflows/everything.yml @@ -13,6 +13,17 @@ # may have made it to the target branch after the pull_request was started. ####################################### +####################################### +# Note regarding restore/save of cache for use by ccache: +# +# We only save cache on main branch runs. PR workflows only consume the +# cache to avoid exceeding the 10 GB limit, which can cause cache thrashing. +# Also, we only save the cache if there was *not* an exact match when cache +# was restored. This avoids attempting to write to an existing cache key, +# which results in failure to save the cache. While failure to save doesn't +# cause job failures, it seems a waste and is easily avoidable. +####################################### + name: GitHub Actions on: @@ -105,6 +116,10 @@ jobs: GH_YML_MATRIX_OS: ${{ matrix.os }} GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} + CCACHE_BASEDIR: "${GITHUB_WORKSPACE}" + CCACHE_DIR: "${GITHUB_WORKSPACE}/.ccache" + CCACHE_COMPRESS: true + CCACHE_COMPRESSLEVEL: 6 strategy: fail-fast: false @@ -131,6 +146,16 @@ jobs: with: ref: ${{ github.event.pull_request.head.sha }} path: source + - name: Restore cache + uses: actions/cache/restore@v3 + id: restore-cache + with: + path: .ccache + key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} + restore-keys: | + ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} + - name: Configure cache + run: ccache -z - name: Setup run: gha/scripts/ci/gh-actions/linux-setup.sh - name: Update @@ -139,6 +164,15 @@ jobs: run: gha/scripts/ci/gh-actions/run.sh configure - name: Build run: gha/scripts/ci/gh-actions/run.sh build + - name: Print ccache statistics + run: ccache -s + - name: Save cache + uses: actions/cache/save@v3 + if: github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit == 'false' + id: save-cache + with: + path: .ccache + key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} - name: Test run: gha/scripts/ci/gh-actions/run.sh test @@ -156,6 +190,10 @@ jobs: GH_YML_MATRIX_OS: ${{ matrix.os }} GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} + CCACHE_BASEDIR: "${GITHUB_WORKSPACE}" + CCACHE_DIR: "${GITHUB_WORKSPACE}/.ccache" + CCACHE_COMPRESS: true + CCACHE_COMPRESSLEVEL: 6 strategy: fail-fast: false @@ -172,6 +210,16 @@ jobs: with: ref: ${{ github.event.pull_request.head.sha }} path: source + - name: Restore cache + uses: actions/cache/restore@v3 + id: restore-cache + with: + path: .ccache + key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} + restore-keys: | + ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} + - name: Configure cache + run: ccache -z - name: Setup run: gha/scripts/ci/gh-actions/linux-setup.sh - name: Update @@ -180,6 +228,15 @@ jobs: run: gha/scripts/ci/gh-actions/run.sh configure - name: Build run: gha/scripts/ci/gh-actions/run.sh build + - name: Print ccache statistics + run: ccache -s + - name: Save cache + uses: actions/cache/save@v3 + if: github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit == 'false' + id: save-cache + with: + path: .ccache + key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} - name: Test run: gha/scripts/ci/gh-actions/run.sh test @@ -194,6 +251,10 @@ jobs: GH_YML_MATRIX_OS: ${{ matrix.os }} GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} GH_YML_MATRIX_PARALLEL: ${{ matrix.parallel }} + CCACHE_BASEDIR: "${GITHUB_WORKSPACE}" + CCACHE_DIR: "${GITHUB_WORKSPACE}/.ccache" + CCACHE_COMPRESS: true + CCACHE_COMPRESSLEVEL: 6 strategy: fail-fast: false @@ -218,16 +279,34 @@ jobs: path: source - name: Setup run: gha/scripts/ci/gh-actions/macos-setup.sh + - name: Restore cache + uses: actions/cache/restore@v3 + id: restore-cache + with: + path: .ccache + key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} + restore-keys: | + ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} + - name: Configure cache + run: ccache -z - name: Update run: gha/scripts/ci/gh-actions/run.sh update - name: Configure run: gha/scripts/ci/gh-actions/run.sh configure - name: Build run: gha/scripts/ci/gh-actions/run.sh build + - name: Print ccache statistics + run: ccache -s + - name: Save cache + uses: actions/cache/save@v3 + if: github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit == 'false' + id: save-cache + with: + path: .ccache + key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} - name: Test run: gha/scripts/ci/gh-actions/run.sh test - windows: needs: [format, git_checks] if: needs.git_checks.outputs.num_code_changes > 0 diff --git a/scripts/ci/cmake/ci-el8-icc-ompi.cmake b/scripts/ci/cmake/ci-el8-icc-ompi.cmake index 8780804c15..940150f1f3 100644 --- a/scripts/ci/cmake/ci-el8-icc-ompi.cmake +++ b/scripts/ci/cmake/ci-el8-icc-ompi.cmake @@ -19,6 +19,8 @@ ADIOS2_USE_SZ:BOOL=ON ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall -diag-disable=10441 CMAKE_C_FLAGS_DEBUG:STRING=-g -O0 CMAKE_CXX_FLAGS:STRING=-Wall -diag-disable=10441 diff --git a/scripts/ci/cmake/ci-el8-icc-serial.cmake b/scripts/ci/cmake/ci-el8-icc-serial.cmake index 3aa93d3da6..65b9d1c8a6 100644 --- a/scripts/ci/cmake/ci-el8-icc-serial.cmake +++ b/scripts/ci/cmake/ci-el8-icc-serial.cmake @@ -15,6 +15,8 @@ ADIOS2_USE_SZ:BOOL=ON ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall -diag-disable=10441 CMAKE_C_FLAGS_DEBUG:STRING=-g -O0 CMAKE_CXX_FLAGS:STRING=-Wall -diag-disable=10441 diff --git a/scripts/ci/cmake/ci-el8-oneapi-ompi.cmake b/scripts/ci/cmake/ci-el8-oneapi-ompi.cmake index ee8163d468..ceed5a8133 100644 --- a/scripts/ci/cmake/ci-el8-oneapi-ompi.cmake +++ b/scripts/ci/cmake/ci-el8-oneapi-ompi.cmake @@ -19,6 +19,8 @@ ADIOS2_USE_SZ:BOOL=ON ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_C_FLAGS_DEBUG:STRING=-g -O0 CMAKE_CXX_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-el8-oneapi-serial.cmake b/scripts/ci/cmake/ci-el8-oneapi-serial.cmake index 0171b05df4..36a4299512 100644 --- a/scripts/ci/cmake/ci-el8-oneapi-serial.cmake +++ b/scripts/ci/cmake/ci-el8-oneapi-serial.cmake @@ -15,6 +15,8 @@ ADIOS2_USE_SZ:BOOL=ON ADIOS2_USE_ZeroMQ:STRING=ON ADIOS2_USE_ZFP:BOOL=ON +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_C_FLAGS_DEBUG:STRING=-g -O0 CMAKE_CXX_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-macos1015-xcode1211-make.cmake b/scripts/ci/cmake/ci-macos1015-xcode1211-make.cmake index 5852b90ad3..79c9754864 100644 --- a/scripts/ci/cmake/ci-macos1015-xcode1211-make.cmake +++ b/scripts/ci/cmake/ci-macos1015-xcode1211-make.cmake @@ -8,6 +8,8 @@ ADIOS2_USE_Fortran:BOOL=ON ADIOS2_USE_MPI:BOOL=OFF ADISO2_USE_Python:BOOL=ON +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-macos11-xcode131-ninja.cmake b/scripts/ci/cmake/ci-macos11-xcode131-ninja.cmake index 9ae02889fe..f70190daf8 100644 --- a/scripts/ci/cmake/ci-macos11-xcode131-ninja.cmake +++ b/scripts/ci/cmake/ci-macos11-xcode131-ninja.cmake @@ -8,6 +8,8 @@ ADIOS2_USE_Fortran:BOOL=ON ADIOS2_USE_MPI:BOOL=OFF ADIOS2_USE_Python:BOOL=ON +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-macos11-xcode13_0-serial.cmake b/scripts/ci/cmake/ci-macos11-xcode13_0-serial.cmake index 5e1bd36186..6c7499bb73 100644 --- a/scripts/ci/cmake/ci-macos11-xcode13_0-serial.cmake +++ b/scripts/ci/cmake/ci-macos11-xcode13_0-serial.cmake @@ -8,6 +8,8 @@ ADIOS2_USE_Fortran:BOOL=ON ADIOS2_USE_MPI:BOOL=OFF ADISO2_USE_Python:BOOL=ON +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-macos12-xcode13_4_1-serial.cmake b/scripts/ci/cmake/ci-macos12-xcode13_4_1-serial.cmake index 37ceb637c3..e9c28d0a63 100644 --- a/scripts/ci/cmake/ci-macos12-xcode13_4_1-serial.cmake +++ b/scripts/ci/cmake/ci-macos12-xcode13_4_1-serial.cmake @@ -8,6 +8,8 @@ ADIOS2_USE_Fortran:BOOL=ON ADIOS2_USE_MPI:BOOL=OFF ADISO2_USE_Python:BOOL=ON +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-ubuntu20.04-clang10-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-clang10-ompi.cmake index 7ebb831301..a5bfaa0c73 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-clang10-ompi.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-clang10-ompi.cmake @@ -27,6 +27,8 @@ Python_ROOT_DIR:PATH=${PY_ROOT} Python_FIND_STRATEGY:STRING=LOCATION Python_FIND_FRAMEWORK:STRING=FIRST +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-ubuntu20.04-clang10-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-clang10-serial.cmake index 96d0c1fe3e..9b60d90964 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-clang10-serial.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-clang10-serial.cmake @@ -23,6 +23,8 @@ Python_ROOT_DIR:PATH=${PY_ROOT} Python_FIND_STRATEGY:STRING=LOCATION Python_FIND_FRAMEWORK:STRING=FIRST +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-ubuntu20.04-clang6-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-clang6-ompi.cmake index 00c3577544..27015806d8 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-clang6-ompi.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-clang6-ompi.cmake @@ -27,6 +27,8 @@ Python_ROOT_DIR:PATH=${PY_ROOT} Python_FIND_STRATEGY:STRING=LOCATION Python_FIND_FRAMEWORK:STRING=FIRST +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-ubuntu20.04-clang6-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-clang6-serial.cmake index 0357b98fc5..f298fe20b6 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-clang6-serial.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-clang6-serial.cmake @@ -23,6 +23,8 @@ Python_ROOT_DIR:PATH=${PY_ROOT} Python_FIND_STRATEGY:STRING=LOCATION Python_FIND_FRAMEWORK:STRING=FIRST +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc10-mpich.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc10-mpich.cmake index a51bfe97a8..1db0a5ee9f 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-gcc10-mpich.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc10-mpich.cmake @@ -27,6 +27,8 @@ Python_ROOT_DIR:PATH=${PY_ROOT} Python_FIND_STRATEGY:STRING=LOCATION Python_FIND_FRAMEWORK:STRING=FIRST +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc10-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc10-ompi.cmake index 8bc947c2d8..b56bfc5f62 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-gcc10-ompi.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc10-ompi.cmake @@ -27,6 +27,8 @@ Python_ROOT_DIR:PATH=${PY_ROOT} Python_FIND_STRATEGY:STRING=LOCATION Python_FIND_FRAMEWORK:STRING=FIRST +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc10-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc10-serial.cmake index 4801f3f4d9..2e2855cb92 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-gcc10-serial.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc10-serial.cmake @@ -23,6 +23,8 @@ Python_ROOT_DIR:PATH=${PY_ROOT} Python_FIND_STRATEGY:STRING=LOCATION Python_FIND_FRAMEWORK:STRING=FIRST +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc11-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc11-ompi.cmake index 8bc947c2d8..b56bfc5f62 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-gcc11-ompi.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc11-ompi.cmake @@ -27,6 +27,8 @@ Python_ROOT_DIR:PATH=${PY_ROOT} Python_FIND_STRATEGY:STRING=LOCATION Python_FIND_FRAMEWORK:STRING=FIRST +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc11-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc11-serial.cmake index 4801f3f4d9..2e2855cb92 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-gcc11-serial.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc11-serial.cmake @@ -23,6 +23,8 @@ Python_ROOT_DIR:PATH=${PY_ROOT} Python_FIND_STRATEGY:STRING=LOCATION Python_FIND_FRAMEWORK:STRING=FIRST +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc8-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-ompi.cmake index 8bc947c2d8..b56bfc5f62 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-gcc8-ompi.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-ompi.cmake @@ -27,6 +27,8 @@ Python_ROOT_DIR:PATH=${PY_ROOT} Python_FIND_STRATEGY:STRING=LOCATION Python_FIND_FRAMEWORK:STRING=FIRST +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc8-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-serial.cmake index 4801f3f4d9..2e2855cb92 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-gcc8-serial.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-serial.cmake @@ -23,6 +23,8 @@ Python_ROOT_DIR:PATH=${PY_ROOT} Python_FIND_STRATEGY:STRING=LOCATION Python_FIND_FRAMEWORK:STRING=FIRST +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc9-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc9-ompi.cmake index 8bc947c2d8..b56bfc5f62 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-gcc9-ompi.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc9-ompi.cmake @@ -27,6 +27,8 @@ Python_ROOT_DIR:PATH=${PY_ROOT} Python_FIND_STRATEGY:STRING=LOCATION Python_FIND_FRAMEWORK:STRING=FIRST +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc9-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc9-serial.cmake index 4801f3f4d9..2e2855cb92 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-gcc9-serial.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc9-serial.cmake @@ -23,6 +23,8 @@ Python_ROOT_DIR:PATH=${PY_ROOT} Python_FIND_STRATEGY:STRING=LOCATION Python_FIND_FRAMEWORK:STRING=FIRST +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache CMAKE_C_FLAGS:STRING=-Wall CMAKE_CXX_FLAGS:STRING=-Wall CMAKE_Fortran_FLAGS:STRING=-Wall diff --git a/scripts/ci/cmake/ci-win2019-vs2019-msmpi.cmake b/scripts/ci/cmake/ci-win2019-vs2019-msmpi.cmake index 203dec8fd9..9783a487ae 100644 --- a/scripts/ci/cmake/ci-win2019-vs2019-msmpi.cmake +++ b/scripts/ci/cmake/ci-win2019-vs2019-msmpi.cmake @@ -19,6 +19,6 @@ MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} set(CTEST_TEST_ARGS PARALLEL_LEVEL 1) #set(CTEST_CMAKE_GENERATOR "Ninja") set(CTEST_CMAKE_GENERATOR "Visual Studio 16 2019") -set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") +set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-win2019-vs2019-ninja.cmake b/scripts/ci/cmake/ci-win2019-vs2019-ninja.cmake index b941f3b4d2..d88b994700 100644 --- a/scripts/ci/cmake/ci-win2019-vs2019-ninja.cmake +++ b/scripts/ci/cmake/ci-win2019-vs2019-ninja.cmake @@ -12,6 +12,6 @@ ADIOS2_USE_MPI:BOOL=OFF set(CTEST_CMAKE_GENERATOR "Ninja") #set(CTEST_CMAKE_GENERATOR "Visual Studio 16 2019") -#set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") +#set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-win2019-vs2019-ompi.cmake b/scripts/ci/cmake/ci-win2019-vs2019-ompi.cmake index 0be2b74470..f79b2a0e19 100644 --- a/scripts/ci/cmake/ci-win2019-vs2019-ompi.cmake +++ b/scripts/ci/cmake/ci-win2019-vs2019-ompi.cmake @@ -10,6 +10,6 @@ ADIOS2_USE_MPI:BOOL=ON set(CTEST_TEST_TIMEOUT 500) set(CTEST_CMAKE_GENERATOR "Visual Studio 16 2019") -set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") +set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-win2019-vs2019-serial.cmake b/scripts/ci/cmake/ci-win2019-vs2019-serial.cmake index e7739ea37a..157e8278f0 100644 --- a/scripts/ci/cmake/ci-win2019-vs2019-serial.cmake +++ b/scripts/ci/cmake/ci-win2019-vs2019-serial.cmake @@ -10,6 +10,6 @@ ADIOS2_USE_MPI:BOOL=OFF set(CTEST_TEST_TIMEOUT 500) set(CTEST_CMAKE_GENERATOR "Visual Studio 16 2019") -set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") +set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake b/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake index 74626dfecd..f51d9c438a 100644 --- a/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake +++ b/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake @@ -9,6 +9,6 @@ ADIOS2_USE_MPI:BOOL=ON ") set(CTEST_CMAKE_GENERATOR "Visual Studio 17 2022") -set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") +set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake b/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake index 291be6ec45..f3b7347e7c 100644 --- a/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake +++ b/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake @@ -9,6 +9,6 @@ ADIOS2_USE_MPI:BOOL=OFF ") set(CTEST_CMAKE_GENERATOR "Visual Studio 17 2022") -set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") +set(CTEST_CMAKE_GENERATOR_PLATFORM "x64") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/gh-actions/macos-setup.sh b/scripts/ci/gh-actions/macos-setup.sh index 7b2bf39543..8cae241e0e 100755 --- a/scripts/ci/gh-actions/macos-setup.sh +++ b/scripts/ci/gh-actions/macos-setup.sh @@ -44,6 +44,9 @@ brew install c-blosc echo "Installing python3" brew install python numpy +echo "Installing ccache" +brew install ccache + if [[ "$GH_YML_JOBNAME" =~ -ompi ]] then echo "Installing OpenMPI" diff --git a/scripts/ci/images/Dockerfile.ci-el8-intel b/scripts/ci/images/Dockerfile.ci-el8-intel index 82eacf7b4a..1ff2894e60 100644 --- a/scripts/ci/images/Dockerfile.ci-el8-intel +++ b/scripts/ci/images/Dockerfile.ci-el8-intel @@ -9,6 +9,7 @@ RUN dnf install -y dnf-plugins-core && \ RUN dnf install -y \ bzip2-devel \ + ccache \ curl \ diffutils \ file \ diff --git a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base index eea7b9cc30..bd432d6060 100644 --- a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base +++ b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base @@ -39,7 +39,9 @@ RUN . /spack/share/spack/setup-env.sh && \ echo "source /spack/share/spack/setup-env.sh" >> /etc/profile.d/zz-spack.sh ### Other missing packages (compared to el8 base): -RUN apt-get remove -y \ +RUN apt-get update && apt-get install -y \ + ccache && \ + apt-get remove -y \ gcc-9 \ g++-9 \ gfortran-9 && \ From af83421957201c89cda904a0b188a7e8517b1bba Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Thu, 20 Jul 2023 17:57:41 -0600 Subject: [PATCH 052/183] Fix broken intel images It seems intel recently came out with the 2023.2.0 versions of these packages, and those were picked with the most recent build. When the newest versions were chosen, we could no longer load the "icc" or "compiler" modules, so pin to the previous working version. --- scripts/ci/images/Dockerfile.ci-el8-intel | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/scripts/ci/images/Dockerfile.ci-el8-intel b/scripts/ci/images/Dockerfile.ci-el8-intel index 1ff2894e60..d43abe663a 100644 --- a/scripts/ci/images/Dockerfile.ci-el8-intel +++ b/scripts/ci/images/Dockerfile.ci-el8-intel @@ -42,9 +42,9 @@ RUN dnf install -y \ COPY oneAPI.repo /etc/yum.repos.d/ RUN pip3 install numpy && \ dnf install -y \ - intel-oneapi-compiler-dpcpp-cpp \ - intel-oneapi-compiler-fortran \ - intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic + intel-oneapi-compiler-dpcpp-cpp-2023.1.0 \ + intel-oneapi-compiler-fortran-2023.1.0 \ + intel-oneapi-compiler-dpcpp-cpp-and-cpp-classic-2023.1.0 RUN dnf clean all # Setup module files for the compilers From 43c2732b2ab7970e3fd1849853ba0c049edfdf51 Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Tue, 1 Aug 2023 12:18:51 -0600 Subject: [PATCH 053/183] ci: Fix conditional expression syntax to fix cache save --- .github/workflows/everything.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/everything.yml b/.github/workflows/everything.yml index 5d67b0669a..c9851de4f1 100644 --- a/.github/workflows/everything.yml +++ b/.github/workflows/everything.yml @@ -168,7 +168,7 @@ jobs: run: ccache -s - name: Save cache uses: actions/cache/save@v3 - if: github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit == 'false' + if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit == 'false' }} id: save-cache with: path: .ccache @@ -232,7 +232,7 @@ jobs: run: ccache -s - name: Save cache uses: actions/cache/save@v3 - if: github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit == 'false' + if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit == 'false' }} id: save-cache with: path: .ccache @@ -299,7 +299,7 @@ jobs: run: ccache -s - name: Save cache uses: actions/cache/save@v3 - if: github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit == 'false' + if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit == 'false' }} id: save-cache with: path: .ccache From 3af372c572e06c7fd59295c02b45448b075c4c8c Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Tue, 1 Aug 2023 16:04:20 -0600 Subject: [PATCH 054/183] ci: work around bug in actions/cache --- .github/workflows/everything.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.github/workflows/everything.yml b/.github/workflows/everything.yml index c9851de4f1..46c01cf4f8 100644 --- a/.github/workflows/everything.yml +++ b/.github/workflows/everything.yml @@ -168,7 +168,7 @@ jobs: run: ccache -s - name: Save cache uses: actions/cache/save@v3 - if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit == 'false' }} + if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit != 'true' }} id: save-cache with: path: .ccache @@ -232,7 +232,7 @@ jobs: run: ccache -s - name: Save cache uses: actions/cache/save@v3 - if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit == 'false' }} + if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit != 'true' }} id: save-cache with: path: .ccache @@ -299,7 +299,7 @@ jobs: run: ccache -s - name: Save cache uses: actions/cache/save@v3 - if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit == 'false' }} + if: ${{ github.ref_name == 'master' && steps.restore-cache.outputs.cache-hit != 'true' }} id: save-cache with: path: .ccache From 57ff4e8f16dd133eb21e3d9cad7fbbef46f9578f Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Tue, 1 Aug 2023 23:14:13 +0000 Subject: [PATCH 055/183] build(deps): bump cryptography from 41.0.2 to 41.0.3 in /docs Bumps [cryptography](https://github.com/pyca/cryptography) from 41.0.2 to 41.0.3. - [Changelog](https://github.com/pyca/cryptography/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pyca/cryptography/compare/41.0.2...41.0.3) --- updated-dependencies: - dependency-name: cryptography dependency-type: direct:production ... Signed-off-by: dependabot[bot] --- docs/requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/requirements.txt b/docs/requirements.txt index 2e0e27f85a..846a653114 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -7,7 +7,7 @@ certifi==2023.7.22 cffi==1.15.1 charset-normalizer==2.1.1 colorama==0.4.6 -cryptography==41.0.2 +cryptography==41.0.3 docutils==0.17 funcparserlib==1.0.1 idna==3.4 From cf63fb7c6226beb4aefaa17f1ae6254c4f4bd40d Mon Sep 17 00:00:00 2001 From: Norbert Podhorszki Date: Thu, 22 Jun 2023 09:01:02 -0400 Subject: [PATCH 056/183] Version constants plus functions to retrieve list of available engines, operators and features. This is a C header but it's part of the core library --- source/adios2/CMakeLists.txt | 6 + source/adios2/core/adios2_libinfo.cpp | 165 ++++++++++++++++++++++++++ source/adios2/core/adios2_libinfo.h | 41 +++++++ source/utils/CMakeLists.txt | 2 +- source/utils/bpls/bpls.cpp | 45 +++++++ source/utils/bpls/bpls.h | 2 + 6 files changed, 260 insertions(+), 1 deletion(-) create mode 100644 source/adios2/core/adios2_libinfo.cpp create mode 100644 source/adios2/core/adios2_libinfo.h diff --git a/source/adios2/CMakeLists.txt b/source/adios2/CMakeLists.txt index cdd3a8d327..a6726ecd2f 100644 --- a/source/adios2/CMakeLists.txt +++ b/source/adios2/CMakeLists.txt @@ -18,6 +18,7 @@ add_library(adios2_core core/VariableBase.cpp core/Span.cpp core/Span.tcc core/Group.cpp core/Group.tcc + core/adios2_libinfo.cpp #operator operator/callback/Signature1.cpp @@ -404,6 +405,11 @@ install(FILES common/ADIOSMacros.h common/ADIOSTypes.h common/ADIOSTypes.inl install(DIRECTORY core/ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/adios2/core COMPONENT adios2_core-development FILES_MATCHING PATTERN "*.h" + PATTERN "adios2_libinfo.h" EXCLUDE +) + +install(FILES core/adios2_libinfo.h + DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} COMPONENT adios2_core-development ) install(DIRECTORY engine/ diff --git a/source/adios2/core/adios2_libinfo.cpp b/source/adios2/core/adios2_libinfo.cpp new file mode 100644 index 0000000000..cd83d92cb3 --- /dev/null +++ b/source/adios2/core/adios2_libinfo.cpp @@ -0,0 +1,165 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * adios2_libinfo.h + * + * Created on: June 22, 2023 + * Author: Norbert Podhorszki pnorbert@ornl.gov + */ + +#include "adios2_libinfo.h" +#include "adios2/common/ADIOSConfig.h" + +#include +#include + +#ifdef __cplusplus +extern "C" { +#endif + +const int adios2_version_major = ADIOS2_VERSION_MAJOR; +const int adios2_version_minor = ADIOS2_VERSION_MINOR; +const int adios2_version_patch = ADIOS2_VERSION_PATCH; +const char *const adios2_version_str = ADIOS2_VERSION_STR; + +static const char *aae[] = {"BP3", + "BP4", +#ifdef ADIOS2_HAVE_BP5 + "BP5", +#endif +#ifdef ADIOS2_HAVE_HDF5 + "HDF5", +#endif +#ifdef ADIOS2_HAVE_SST + "SST", +#endif +#ifdef ADIOS2_HAVE_MPI + "SSC", +#endif +#ifdef ADIOS2_HAVE_DataMan + "DataMan", +#endif +#ifdef ADIOS2_HAVE_DataSpaces + "DataSpaces", +#endif + "Inline", +#ifdef ADIOS2_HAVE_DAOS + "DAOS", +#endif +#ifdef ADIOS2_HAVE_MHS + "MHS", +#endif +#ifdef ADIOS2_HAVE_CATALYST + "ParaViewADIOSInSituEngine", +#endif + "Null", + "Skeleton", + nullptr}; + +void adios2_available_engines(int *nentries, char const ***list) +{ + int ne = 0; + while (aae[ne] != nullptr) + ++ne; + *nentries = ne; + *list = aae; + return; +} + +static const char *aao[] = { +#ifdef ADIOS2_HAVE_BZIP2 + "BZip2", +#endif +#ifdef ADIOS2_HAVE_BLOSC2 + "Blosc", +#endif +#ifdef ADIOS2_HAVE_MGARD + "MGARD", + "MGARDPlus", +#endif +#ifdef ADIOS2_HAVE_SZ + "SZ", +#endif +#ifdef ADIOS2_HAVE_ZFP + "ZFP", +#endif +#ifdef ADIOS2_HAVE_PNG + "PNG", +#endif +#ifdef ADIOS2_HAVE_SIRIUS + "Sirius", +#endif +#ifdef ADIOS2_HAVE_LIBPRESSIO + "libpressio", +#ifdef ADIOS2_HAVE_SODIUM + "Sodium plugin", +#endif +#endif + "None", + nullptr}; + +void adios2_available_operators(int *nentries, char const ***list) +{ + int no = 0; + while (aao[no] != nullptr) + ++no; + *nentries = no; + *list = aao; + return; +} + +static const char *aaf[] = { +#ifdef ADIOS2_HAVE_MPI + "MPI", +#endif +#ifdef ADIOS2_HAVE_FORTRAN + "Fortran", +#endif +#ifdef ADIOS2_HAVE_PYTHON + "Python", +#endif +#ifdef ADIOS2_HAVE_IME + "IME", +#endif +#ifdef ADIOS2_HAVE_UCX + "UCX", +#endif +#ifdef ADIOS2_HAVE_AWSSDK + "AWSSDK", +#endif + +#ifdef ADIOS2_HAVE_KOKKOS + "Kokkos (Host" +#ifdef ADIOS2_HAVE_KOKKOS_CUDA + ", CUDA" +#endif +#ifdef ADIOS2_HAVE_KOKKOS_HIP + ", HIP" +#endif +#ifdef ADIOS2_HAVE_KOKKOS_SYCL + ", SYCL" +#endif + ")" +#endif // ADIOS2_HAVE_KOKKOS + +#ifdef ADIOS2_HAVE_CUDA + "CUDA", +#endif + nullptr}; + +void adios2_available_features(int *nentries, char const ***list) +{ + int nf = 0; + while (aaf[nf] != nullptr) + ++nf; + *nentries = nf; + *list = aaf; + return; +} + +void adios2_free_list(int nentries, char const ***list) {} + +#ifdef __cplusplus +} // end extern C +#endif diff --git a/source/adios2/core/adios2_libinfo.h b/source/adios2/core/adios2_libinfo.h new file mode 100644 index 0000000000..29a6645616 --- /dev/null +++ b/source/adios2/core/adios2_libinfo.h @@ -0,0 +1,41 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * adios2_libinfo.h + * + * Created on: June 22, 2023 + * Author: Norbert Podhorszki pnorbert@ornl.gov + */ + +#ifndef ADIOS2_LIBINFO_H_ +#define ADIOS2_LIBINFO_H_ + +#ifdef __cplusplus +extern "C" { +#endif + +extern const int adios2_version_major; +extern const int adios2_version_minor; +extern const int adios2_version_patch; +extern const char *const adios2_version_str; + +/** Return the list of available Engines in the installed adios2 library */ +void adios2_available_engines(int *nentries, char const ***list); + +/** Return the list of available Engines in the installed adios2 library */ +void adios2_available_operators(int *nentries, char const ***list); + +/** Return the list of available features in the installed adios2 library */ +void adios2_available_features(int *nentries, char const ***list); + +/** Free function for list returned by adios2_available_engines() and + * adios2_available_operators() + */ +void adios2_free_list(int nentries, char const ***list); + +#ifdef __cplusplus +} // end extern C +#endif + +#endif /* ADIOS2_LIBINFO_H_ */ diff --git a/source/utils/CMakeLists.txt b/source/utils/CMakeLists.txt index 227c176754..37153406c0 100644 --- a/source/utils/CMakeLists.txt +++ b/source/utils/CMakeLists.txt @@ -14,7 +14,7 @@ add_executable(bpls ./bpls/bpls.cpp) target_link_libraries(bpls PUBLIC adios2_core adios2sys PRIVATE adios2::thirdparty::pugixml $<$:shlwapi>) -target_include_directories(bpls PRIVATE ${PROJECT_BINARY_DIR}) +target_include_directories(bpls PRIVATE ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}/bindings/C) set_property(TARGET bpls PROPERTY OUTPUT_NAME bpls${ADIOS2_EXECUTABLE_SUFFIX}) install(TARGETS bpls EXPORT adios2 RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} COMPONENT adios2_tools-runtime diff --git a/source/utils/bpls/bpls.cpp b/source/utils/bpls/bpls.cpp index c7e6e166cc..8609fbf5c5 100644 --- a/source/utils/bpls/bpls.cpp +++ b/source/utils/bpls/bpls.cpp @@ -246,6 +246,51 @@ void print_bpls_version() } printf("Target OS: %s\n", ADIOS_INFO_SYSTEM); printf("Target Arch: %s\n", ADIOS_INFO_ARCH); + + int nengines; + char const **list_engines; + adios2_available_engines(&nengines, &list_engines); + printf("Available engines = %d:", nengines); + for (int i = 0; i < nengines; ++i) + { + printf(" %s", list_engines[i]); + if (i < nengines - 1) + { + printf(","); + } + } + printf("\n"); + adios2_free_list(nengines, &list_engines); + + int noperators; + char const **list_operators; + adios2_available_operators(&noperators, &list_operators); + printf("Available operators = %d:", noperators); + for (int i = 0; i < noperators; ++i) + { + printf(" %s", list_operators[i]); + if (i < noperators - 1) + { + printf(","); + } + } + printf("\n"); + adios2_free_list(noperators, &list_operators); + + int nfeatures; + char const **list_features; + adios2_available_features(&nfeatures, &list_features); + printf("Available features = %d:", nfeatures); + for (int i = 0; i < nfeatures; ++i) + { + printf(" %s", list_features[i]); + if (i < nfeatures - 1) + { + printf(","); + } + } + printf("\n"); + adios2_free_list(nfeatures, &list_features); } } diff --git a/source/utils/bpls/bpls.h b/source/utils/bpls/bpls.h index ffce2621b4..aca67f7cd5 100644 --- a/source/utils/bpls/bpls.h +++ b/source/utils/bpls/bpls.h @@ -14,6 +14,8 @@ #include "adios2/core/Variable.h" #include "adios2/helper/adiosFunctions.h" +#include "adios2/core/adios2_libinfo.h" + #include namespace adios2 From b677367afa39ff5c8e3b4a27ea5490037c99ae23 Mon Sep 17 00:00:00 2001 From: Norbert Podhorszki Date: Sun, 25 Jun 2023 13:24:19 -0400 Subject: [PATCH 057/183] add missing comma --- source/adios2/core/adios2_libinfo.cpp | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/source/adios2/core/adios2_libinfo.cpp b/source/adios2/core/adios2_libinfo.cpp index cd83d92cb3..31da7a2fc0 100644 --- a/source/adios2/core/adios2_libinfo.cpp +++ b/source/adios2/core/adios2_libinfo.cpp @@ -140,7 +140,7 @@ static const char *aaf[] = { #ifdef ADIOS2_HAVE_KOKKOS_SYCL ", SYCL" #endif - ")" + ")", #endif // ADIOS2_HAVE_KOKKOS #ifdef ADIOS2_HAVE_CUDA From b9dec1e28ecea7bb3f88460df54f222d1dd89b45 Mon Sep 17 00:00:00 2001 From: Norbert Podhorszki Date: Mon, 26 Jun 2023 07:00:47 -0400 Subject: [PATCH 058/183] change const for list and remove free function --- source/adios2/core/adios2_libinfo.cpp | 8 +++----- source/adios2/core/adios2_libinfo.h | 11 +++-------- source/utils/bpls/bpls.cpp | 9 +++------ 3 files changed, 9 insertions(+), 19 deletions(-) diff --git a/source/adios2/core/adios2_libinfo.cpp b/source/adios2/core/adios2_libinfo.cpp index 31da7a2fc0..b36a2349e3 100644 --- a/source/adios2/core/adios2_libinfo.cpp +++ b/source/adios2/core/adios2_libinfo.cpp @@ -57,7 +57,7 @@ static const char *aae[] = {"BP3", "Skeleton", nullptr}; -void adios2_available_engines(int *nentries, char const ***list) +void adios2_available_engines(int *nentries, char const *const **list) { int ne = 0; while (aae[ne] != nullptr) @@ -99,7 +99,7 @@ static const char *aao[] = { "None", nullptr}; -void adios2_available_operators(int *nentries, char const ***list) +void adios2_available_operators(int *nentries, char const *const **list) { int no = 0; while (aao[no] != nullptr) @@ -148,7 +148,7 @@ static const char *aaf[] = { #endif nullptr}; -void adios2_available_features(int *nentries, char const ***list) +void adios2_available_features(int *nentries, char const *const **list) { int nf = 0; while (aaf[nf] != nullptr) @@ -158,8 +158,6 @@ void adios2_available_features(int *nentries, char const ***list) return; } -void adios2_free_list(int nentries, char const ***list) {} - #ifdef __cplusplus } // end extern C #endif diff --git a/source/adios2/core/adios2_libinfo.h b/source/adios2/core/adios2_libinfo.h index 29a6645616..662f43334d 100644 --- a/source/adios2/core/adios2_libinfo.h +++ b/source/adios2/core/adios2_libinfo.h @@ -21,18 +21,13 @@ extern const int adios2_version_patch; extern const char *const adios2_version_str; /** Return the list of available Engines in the installed adios2 library */ -void adios2_available_engines(int *nentries, char const ***list); +void adios2_available_engines(int *nentries, char const *const **list); /** Return the list of available Engines in the installed adios2 library */ -void adios2_available_operators(int *nentries, char const ***list); +void adios2_available_operators(int *nentries, char const *const **list); /** Return the list of available features in the installed adios2 library */ -void adios2_available_features(int *nentries, char const ***list); - -/** Free function for list returned by adios2_available_engines() and - * adios2_available_operators() - */ -void adios2_free_list(int nentries, char const ***list); +void adios2_available_features(int *nentries, char const *const **list); #ifdef __cplusplus } // end extern C diff --git a/source/utils/bpls/bpls.cpp b/source/utils/bpls/bpls.cpp index 8609fbf5c5..ec6171fda4 100644 --- a/source/utils/bpls/bpls.cpp +++ b/source/utils/bpls/bpls.cpp @@ -248,7 +248,7 @@ void print_bpls_version() printf("Target Arch: %s\n", ADIOS_INFO_ARCH); int nengines; - char const **list_engines; + char const *const *list_engines; adios2_available_engines(&nengines, &list_engines); printf("Available engines = %d:", nengines); for (int i = 0; i < nengines; ++i) @@ -260,10 +260,9 @@ void print_bpls_version() } } printf("\n"); - adios2_free_list(nengines, &list_engines); int noperators; - char const **list_operators; + char const *const *list_operators; adios2_available_operators(&noperators, &list_operators); printf("Available operators = %d:", noperators); for (int i = 0; i < noperators; ++i) @@ -275,10 +274,9 @@ void print_bpls_version() } } printf("\n"); - adios2_free_list(noperators, &list_operators); int nfeatures; - char const **list_features; + char const *const *list_features; adios2_available_features(&nfeatures, &list_features); printf("Available features = %d:", nfeatures); for (int i = 0; i < nfeatures; ++i) @@ -290,7 +288,6 @@ void print_bpls_version() } } printf("\n"); - adios2_free_list(nfeatures, &list_features); } } From 6c4c72359fac746e2b95b8d47c97dd636e50ee05 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Tue, 1 Aug 2023 20:24:55 -0400 Subject: [PATCH 059/183] Use CMake features; add unit test --- cmake/ADIOSFunctions.cmake | 2 + source/adios2/CMakeLists.txt | 6 +- source/adios2/common/ADIOSConfig.h.in | 2 + source/adios2/core/Info.cpp | 113 ++++++++++++ .../adios2/core/{adios2_libinfo.h => Info.h} | 18 +- source/adios2/core/adios2_libinfo.cpp | 163 ------------------ source/utils/bpls/bpls.cpp | 24 +-- source/utils/bpls/bpls.h | 2 +- testing/adios2/interface/CMakeLists.txt | 1 + testing/adios2/interface/TestADIOSInfo.cpp | 41 +++++ 10 files changed, 185 insertions(+), 187 deletions(-) create mode 100644 source/adios2/core/Info.cpp rename source/adios2/core/{adios2_libinfo.h => Info.h} (63%) delete mode 100644 source/adios2/core/adios2_libinfo.cpp create mode 100644 testing/adios2/interface/TestADIOSInfo.cpp diff --git a/cmake/ADIOSFunctions.cmake b/cmake/ADIOSFunctions.cmake index 36257e34d6..7d26bcc355 100644 --- a/cmake/ADIOSFunctions.cmake +++ b/cmake/ADIOSFunctions.cmake @@ -102,10 +102,12 @@ function(GenerateADIOSHeaderConfig) ") if(ADIOS2_HAVE_${OPT}) set(ADIOS2_HAVE_${OPT_UPPER} 1) + string(APPEND ADIOS2_CONFIG_FEATURE_LIST "\"${OPT_UPPER}\",") else() set(ADIOS2_HAVE_${OPT_UPPER}) endif() endforeach() + string(APPEND ADIOS2_CONFIG_FEATURE_LIST "nullptr") configure_file( ${ADIOS2_SOURCE_DIR}/source/adios2/common/ADIOSConfig.h.in diff --git a/source/adios2/CMakeLists.txt b/source/adios2/CMakeLists.txt index a6726ecd2f..6bdbcf38a8 100644 --- a/source/adios2/CMakeLists.txt +++ b/source/adios2/CMakeLists.txt @@ -18,7 +18,7 @@ add_library(adios2_core core/VariableBase.cpp core/Span.cpp core/Span.tcc core/Group.cpp core/Group.tcc - core/adios2_libinfo.cpp + core/Info.cpp #operator operator/callback/Signature1.cpp @@ -405,10 +405,10 @@ install(FILES common/ADIOSMacros.h common/ADIOSTypes.h common/ADIOSTypes.inl install(DIRECTORY core/ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/adios2/core COMPONENT adios2_core-development FILES_MATCHING PATTERN "*.h" - PATTERN "adios2_libinfo.h" EXCLUDE + PATTERN "Info.h" EXCLUDE ) -install(FILES core/adios2_libinfo.h +install(FILES core/Info.h DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} COMPONENT adios2_core-development ) diff --git a/source/adios2/common/ADIOSConfig.h.in b/source/adios2/common/ADIOSConfig.h.in index 2fef35756b..ae0bccbb59 100644 --- a/source/adios2/common/ADIOSConfig.h.in +++ b/source/adios2/common/ADIOSConfig.h.in @@ -31,6 +31,8 @@ @ADIOS2_CONFIG_DEFINES@ +#define ADIOS2_FEATURE_LIST @ADIOS2_CONFIG_FEATURE_LIST@ + /* Everything between here and the note above is programatically generated */ #ifndef ADIOS2_USE_MPI diff --git a/source/adios2/core/Info.cpp b/source/adios2/core/Info.cpp new file mode 100644 index 0000000000..f6fab45756 --- /dev/null +++ b/source/adios2/core/Info.cpp @@ -0,0 +1,113 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * Info.h + * + * Created on: June 22, 2023 + * Author: Norbert Podhorszki pnorbert@ornl.gov + */ + +#include "Info.h" +#include "adios2/common/ADIOSConfig.h" + +#include +#include + +#ifdef __cplusplus +extern "C" { +#endif + +const int adios2_version_major = ADIOS2_VERSION_MAJOR; +const int adios2_version_minor = ADIOS2_VERSION_MINOR; +const int adios2_version_patch = ADIOS2_VERSION_PATCH; +const char adios2_version_str[] = ADIOS2_VERSION_STR; + +static const char *const engines[] = {"BP3", + "BP4", +#ifdef ADIOS2_HAVE_BP5 + "BP5", +#endif +#ifdef ADIOS2_HAVE_HDF5 + "HDF5", +#endif +#ifdef ADIOS2_HAVE_SST + "SST", +#endif +#ifdef ADIOS2_HAVE_MPI + "SSC", +#endif +#ifdef ADIOS2_HAVE_DataMan + "DataMan", +#endif +#ifdef ADIOS2_HAVE_DataSpaces + "DataSpaces", +#endif + "Inline", +#ifdef ADIOS2_HAVE_DAOS + "DAOS", +#endif +#ifdef ADIOS2_HAVE_MHS + "MHS", +#endif +#ifdef ADIOS2_HAVE_CATALYST + "ParaViewADIOSInSituEngine", +#endif + "Null", + "Skeleton", + nullptr}; + +void adios2_available_engines(size_t *nentries, const char *const **list) +{ + *nentries = (sizeof(engines) / sizeof(const char *)) - 1; + *list = engines; +} + +static const char *const operators[] = { +#ifdef ADIOS2_HAVE_BZIP2 + "BZip2", +#endif +#ifdef ADIOS2_HAVE_BLOSC2 + "Blosc", +#endif +#ifdef ADIOS2_HAVE_MGARD + "MGARD", + "MGARDPlus", +#endif +#ifdef ADIOS2_HAVE_SZ + "SZ", +#endif +#ifdef ADIOS2_HAVE_ZFP + "ZFP", +#endif +#ifdef ADIOS2_HAVE_PNG + "PNG", +#endif +#ifdef ADIOS2_HAVE_SIRIUS + "Sirius", +#endif +#ifdef ADIOS2_HAVE_LIBPRESSIO + "libpressio", +#ifdef ADIOS2_HAVE_SODIUM + "Sodium plugin", +#endif +#endif + nullptr}; + +void adios2_available_operators(size_t *nentries, const char *const **list) +{ + *nentries = (sizeof(operators) / sizeof(const char *)) - 1; + *list = operators; +} + +const char *adios2_feature_list[] = {ADIOS2_FEATURE_LIST}; + +void adios2_available_features(size_t *nentries, const char *const **list) +{ + *nentries = (sizeof(adios2_feature_list) / sizeof(const char *)) - 1; + *list = adios2_feature_list; +} + +#ifdef __cplusplus +} // end extern C +#endif diff --git a/source/adios2/core/adios2_libinfo.h b/source/adios2/core/Info.h similarity index 63% rename from source/adios2/core/adios2_libinfo.h rename to source/adios2/core/Info.h index 662f43334d..657cea1a0e 100644 --- a/source/adios2/core/adios2_libinfo.h +++ b/source/adios2/core/Info.h @@ -2,14 +2,16 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * adios2_libinfo.h + * Info.h * * Created on: June 22, 2023 * Author: Norbert Podhorszki pnorbert@ornl.gov */ -#ifndef ADIOS2_LIBINFO_H_ -#define ADIOS2_LIBINFO_H_ +#ifndef ADIOS2_INFO_H_ +#define ADIOS2_INFO_H_ + +#include #ifdef __cplusplus extern "C" { @@ -18,19 +20,19 @@ extern "C" { extern const int adios2_version_major; extern const int adios2_version_minor; extern const int adios2_version_patch; -extern const char *const adios2_version_str; +extern const char adios2_version_str[]; /** Return the list of available Engines in the installed adios2 library */ -void adios2_available_engines(int *nentries, char const *const **list); +void adios2_available_engines(size_t *nentries, const char *const **list); /** Return the list of available Engines in the installed adios2 library */ -void adios2_available_operators(int *nentries, char const *const **list); +void adios2_available_operators(size_t *nentries, const char *const **list); /** Return the list of available features in the installed adios2 library */ -void adios2_available_features(int *nentries, char const *const **list); +void adios2_available_features(size_t *nentries, const char *const **list); #ifdef __cplusplus } // end extern C #endif -#endif /* ADIOS2_LIBINFO_H_ */ +#endif /* ADIOS2_INFO_H_ */ diff --git a/source/adios2/core/adios2_libinfo.cpp b/source/adios2/core/adios2_libinfo.cpp deleted file mode 100644 index b36a2349e3..0000000000 --- a/source/adios2/core/adios2_libinfo.cpp +++ /dev/null @@ -1,163 +0,0 @@ -/* - * Distributed under the OSI-approved Apache License, Version 2.0. See - * accompanying file Copyright.txt for details. - * - * adios2_libinfo.h - * - * Created on: June 22, 2023 - * Author: Norbert Podhorszki pnorbert@ornl.gov - */ - -#include "adios2_libinfo.h" -#include "adios2/common/ADIOSConfig.h" - -#include -#include - -#ifdef __cplusplus -extern "C" { -#endif - -const int adios2_version_major = ADIOS2_VERSION_MAJOR; -const int adios2_version_minor = ADIOS2_VERSION_MINOR; -const int adios2_version_patch = ADIOS2_VERSION_PATCH; -const char *const adios2_version_str = ADIOS2_VERSION_STR; - -static const char *aae[] = {"BP3", - "BP4", -#ifdef ADIOS2_HAVE_BP5 - "BP5", -#endif -#ifdef ADIOS2_HAVE_HDF5 - "HDF5", -#endif -#ifdef ADIOS2_HAVE_SST - "SST", -#endif -#ifdef ADIOS2_HAVE_MPI - "SSC", -#endif -#ifdef ADIOS2_HAVE_DataMan - "DataMan", -#endif -#ifdef ADIOS2_HAVE_DataSpaces - "DataSpaces", -#endif - "Inline", -#ifdef ADIOS2_HAVE_DAOS - "DAOS", -#endif -#ifdef ADIOS2_HAVE_MHS - "MHS", -#endif -#ifdef ADIOS2_HAVE_CATALYST - "ParaViewADIOSInSituEngine", -#endif - "Null", - "Skeleton", - nullptr}; - -void adios2_available_engines(int *nentries, char const *const **list) -{ - int ne = 0; - while (aae[ne] != nullptr) - ++ne; - *nentries = ne; - *list = aae; - return; -} - -static const char *aao[] = { -#ifdef ADIOS2_HAVE_BZIP2 - "BZip2", -#endif -#ifdef ADIOS2_HAVE_BLOSC2 - "Blosc", -#endif -#ifdef ADIOS2_HAVE_MGARD - "MGARD", - "MGARDPlus", -#endif -#ifdef ADIOS2_HAVE_SZ - "SZ", -#endif -#ifdef ADIOS2_HAVE_ZFP - "ZFP", -#endif -#ifdef ADIOS2_HAVE_PNG - "PNG", -#endif -#ifdef ADIOS2_HAVE_SIRIUS - "Sirius", -#endif -#ifdef ADIOS2_HAVE_LIBPRESSIO - "libpressio", -#ifdef ADIOS2_HAVE_SODIUM - "Sodium plugin", -#endif -#endif - "None", - nullptr}; - -void adios2_available_operators(int *nentries, char const *const **list) -{ - int no = 0; - while (aao[no] != nullptr) - ++no; - *nentries = no; - *list = aao; - return; -} - -static const char *aaf[] = { -#ifdef ADIOS2_HAVE_MPI - "MPI", -#endif -#ifdef ADIOS2_HAVE_FORTRAN - "Fortran", -#endif -#ifdef ADIOS2_HAVE_PYTHON - "Python", -#endif -#ifdef ADIOS2_HAVE_IME - "IME", -#endif -#ifdef ADIOS2_HAVE_UCX - "UCX", -#endif -#ifdef ADIOS2_HAVE_AWSSDK - "AWSSDK", -#endif - -#ifdef ADIOS2_HAVE_KOKKOS - "Kokkos (Host" -#ifdef ADIOS2_HAVE_KOKKOS_CUDA - ", CUDA" -#endif -#ifdef ADIOS2_HAVE_KOKKOS_HIP - ", HIP" -#endif -#ifdef ADIOS2_HAVE_KOKKOS_SYCL - ", SYCL" -#endif - ")", -#endif // ADIOS2_HAVE_KOKKOS - -#ifdef ADIOS2_HAVE_CUDA - "CUDA", -#endif - nullptr}; - -void adios2_available_features(int *nentries, char const *const **list) -{ - int nf = 0; - while (aaf[nf] != nullptr) - ++nf; - *nentries = nf; - *list = aaf; - return; -} - -#ifdef __cplusplus -} // end extern C -#endif diff --git a/source/utils/bpls/bpls.cpp b/source/utils/bpls/bpls.cpp index ec6171fda4..462598d90a 100644 --- a/source/utils/bpls/bpls.cpp +++ b/source/utils/bpls/bpls.cpp @@ -247,11 +247,11 @@ void print_bpls_version() printf("Target OS: %s\n", ADIOS_INFO_SYSTEM); printf("Target Arch: %s\n", ADIOS_INFO_ARCH); - int nengines; - char const *const *list_engines; + size_t nengines; + const char *const *list_engines; adios2_available_engines(&nengines, &list_engines); - printf("Available engines = %d:", nengines); - for (int i = 0; i < nengines; ++i) + printf("Available engines = %zu:", nengines); + for (size_t i = 0; i < nengines; ++i) { printf(" %s", list_engines[i]); if (i < nengines - 1) @@ -261,11 +261,11 @@ void print_bpls_version() } printf("\n"); - int noperators; - char const *const *list_operators; + size_t noperators; + const char *const *list_operators; adios2_available_operators(&noperators, &list_operators); - printf("Available operators = %d:", noperators); - for (int i = 0; i < noperators; ++i) + printf("Available operators = %zu:", noperators); + for (size_t i = 0; i < noperators; ++i) { printf(" %s", list_operators[i]); if (i < noperators - 1) @@ -275,11 +275,11 @@ void print_bpls_version() } printf("\n"); - int nfeatures; - char const *const *list_features; + size_t nfeatures; + const char *const *list_features; adios2_available_features(&nfeatures, &list_features); - printf("Available features = %d:", nfeatures); - for (int i = 0; i < nfeatures; ++i) + printf("Available features = %zu:", nfeatures); + for (size_t i = 0; i < nfeatures; ++i) { printf(" %s", list_features[i]); if (i < nfeatures - 1) diff --git a/source/utils/bpls/bpls.h b/source/utils/bpls/bpls.h index aca67f7cd5..f0a715a94f 100644 --- a/source/utils/bpls/bpls.h +++ b/source/utils/bpls/bpls.h @@ -14,7 +14,7 @@ #include "adios2/core/Variable.h" #include "adios2/helper/adiosFunctions.h" -#include "adios2/core/adios2_libinfo.h" +#include "adios2/core/Info.h" #include diff --git a/testing/adios2/interface/CMakeLists.txt b/testing/adios2/interface/CMakeLists.txt index 050be805b9..25d7ccbf8b 100644 --- a/testing/adios2/interface/CMakeLists.txt +++ b/testing/adios2/interface/CMakeLists.txt @@ -29,3 +29,4 @@ gtest_add_tests_helper(Selection MPI_NONE ADIOS Interface. .BP3 gtest_add_tests_helper(Selection MPI_NONE ADIOS Interface. .BPfile WORKING_DIRECTORY ${BPfile_DIR} EXTRA_ARGS "BPfile") gtest_add_tests_helper(NoMpi MPI_NONE ADIOS Interface. "") +gtest_add_tests_helper(Info MPI_NONE ADIOS Interface. "") diff --git a/testing/adios2/interface/TestADIOSInfo.cpp b/testing/adios2/interface/TestADIOSInfo.cpp new file mode 100644 index 0000000000..b719537ab3 --- /dev/null +++ b/testing/adios2/interface/TestADIOSInfo.cpp @@ -0,0 +1,41 @@ +#include +#include + +TEST(ADIOSInterface, info_available_features) +{ + size_t nfeatures = 0; + const char *const *list_features = nullptr; + adios2_available_features(&nfeatures, &list_features); + + EXPECT_GE(nfeatures, 0); + EXPECT_NE(list_features, nullptr); + EXPECT_EQ(list_features[nfeatures], nullptr); +} + +TEST(ADIOSInterface, info_available_engines) +{ + size_t nengines = 0; + const char *const *list_engines = nullptr; + adios2_available_engines(&nengines, &list_engines); + + EXPECT_GE(nengines, 1); + EXPECT_NE(list_engines, nullptr); + EXPECT_EQ(list_engines[nengines], nullptr); +} + +TEST(ADIOSInterface, info_available_operators) +{ + size_t noperators = 0; + const char *const *list_operators = nullptr; + adios2_available_operators(&noperators, &list_operators); + + EXPECT_GE(noperators, 0); + EXPECT_NE(list_operators, nullptr); + EXPECT_EQ(list_operators[noperators], nullptr); +} + +int main(int argc, char **argv) +{ + ::testing::InitGoogleTest(&argc, argv); + return RUN_ALL_TESTS(); +} From a3c8cb3691f6fd94ee47d4afa5f4a10aa823286f Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Wed, 2 Aug 2023 15:08:05 -0600 Subject: [PATCH 060/183] ci: add libcurl4 to all ubuntu images --- scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base index bd432d6060..7d2b8f2222 100644 --- a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base +++ b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base @@ -40,7 +40,8 @@ RUN . /spack/share/spack/setup-env.sh && \ ### Other missing packages (compared to el8 base): RUN apt-get update && apt-get install -y \ - ccache && \ + ccache \ + libcurl4-gnutls-dev && \ apt-get remove -y \ gcc-9 \ g++-9 \ From f359ecb38eed35703333dc9c69bb740ab915fefe Mon Sep 17 00:00:00 2001 From: Vicente Bolea Date: Mon, 17 Jul 2023 22:19:50 -0400 Subject: [PATCH 061/183] Merge pull request #3699 from vicentebolea/revert-normalize-eol Updated files with new EOL (cherry picked from commit 8b1600946d8eeb10c2c9bb4ef2f4d930437b9838) --- docs/user_guide/make.bat | 526 +-- source/adios2/toolkit/sst/cp/cp_reader.c | 4862 +++++++++++----------- source/h5vol/H5VolReadWrite.h | 302 +- 3 files changed, 2845 insertions(+), 2845 deletions(-) diff --git a/docs/user_guide/make.bat b/docs/user_guide/make.bat index 23ab83d412..fec0995b7a 100644 --- a/docs/user_guide/make.bat +++ b/docs/user_guide/make.bat @@ -1,263 +1,263 @@ -@ECHO OFF - -REM Command file for Sphinx documentation - -if "%SPHINXBUILD%" == "" ( - set SPHINXBUILD=sphinx-build -) -set BUILDDIR=build -set ALLSPHINXOPTS=-d %BUILDDIR%/doctrees %SPHINXOPTS% source -set I18NSPHINXOPTS=%SPHINXOPTS% source -if NOT "%PAPER%" == "" ( - set ALLSPHINXOPTS=-D latex_paper_size=%PAPER% %ALLSPHINXOPTS% - set I18NSPHINXOPTS=-D latex_paper_size=%PAPER% %I18NSPHINXOPTS% -) - -if "%1" == "" goto help - -if "%1" == "help" ( - :help - echo.Please use `make ^` where ^ is one of - echo. html to make standalone HTML files - echo. dirhtml to make HTML files named index.html in directories - echo. singlehtml to make a single large HTML file - echo. pickle to make pickle files - echo. json to make JSON files - echo. htmlhelp to make HTML files and a HTML help project - echo. qthelp to make HTML files and a qthelp project - echo. devhelp to make HTML files and a Devhelp project - echo. epub to make an epub - echo. latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter - echo. text to make text files - echo. man to make manual pages - echo. texinfo to make Texinfo files - echo. gettext to make PO message catalogs - echo. changes to make an overview over all changed/added/deprecated items - echo. xml to make Docutils-native XML files - echo. pseudoxml to make pseudoxml-XML files for display purposes - echo. linkcheck to check all external links for integrity - echo. doctest to run all doctests embedded in the documentation if enabled - echo. coverage to run coverage check of the documentation if enabled - goto end -) - -if "%1" == "clean" ( - for /d %%i in (%BUILDDIR%\*) do rmdir /q /s %%i - del /q /s %BUILDDIR%\* - goto end -) - - -REM Check if sphinx-build is available and fallback to Python version if any -%SPHINXBUILD% 1>NUL 2>NUL -if errorlevel 9009 goto sphinx_python -goto sphinx_ok - -:sphinx_python - -set SPHINXBUILD=python -m sphinx.__init__ -%SPHINXBUILD% 2> nul -if errorlevel 9009 ( - echo. - echo.The 'sphinx-build' command was not found. Make sure you have Sphinx - echo.installed, then set the SPHINXBUILD environment variable to point - echo.to the full path of the 'sphinx-build' executable. Alternatively you - echo.may add the Sphinx directory to PATH. - echo. - echo.If you don't have Sphinx installed, grab it from - echo.http://sphinx-doc.org/ - exit /b 1 -) - -:sphinx_ok - - -if "%1" == "html" ( - %SPHINXBUILD% -b html %ALLSPHINXOPTS% %BUILDDIR%/html - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The HTML pages are in %BUILDDIR%/html. - goto end -) - -if "%1" == "dirhtml" ( - %SPHINXBUILD% -b dirhtml %ALLSPHINXOPTS% %BUILDDIR%/dirhtml - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The HTML pages are in %BUILDDIR%/dirhtml. - goto end -) - -if "%1" == "singlehtml" ( - %SPHINXBUILD% -b singlehtml %ALLSPHINXOPTS% %BUILDDIR%/singlehtml - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The HTML pages are in %BUILDDIR%/singlehtml. - goto end -) - -if "%1" == "pickle" ( - %SPHINXBUILD% -b pickle %ALLSPHINXOPTS% %BUILDDIR%/pickle - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can process the pickle files. - goto end -) - -if "%1" == "json" ( - %SPHINXBUILD% -b json %ALLSPHINXOPTS% %BUILDDIR%/json - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can process the JSON files. - goto end -) - -if "%1" == "htmlhelp" ( - %SPHINXBUILD% -b htmlhelp %ALLSPHINXOPTS% %BUILDDIR%/htmlhelp - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can run HTML Help Workshop with the ^ -.hhp project file in %BUILDDIR%/htmlhelp. - goto end -) - -if "%1" == "qthelp" ( - %SPHINXBUILD% -b qthelp %ALLSPHINXOPTS% %BUILDDIR%/qthelp - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; now you can run "qcollectiongenerator" with the ^ -.qhcp project file in %BUILDDIR%/qthelp, like this: - echo.^> qcollectiongenerator %BUILDDIR%\qthelp\ADIOS2.qhcp - echo.To view the help file: - echo.^> assistant -collectionFile %BUILDDIR%\qthelp\ADIOS2.ghc - goto end -) - -if "%1" == "devhelp" ( - %SPHINXBUILD% -b devhelp %ALLSPHINXOPTS% %BUILDDIR%/devhelp - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. - goto end -) - -if "%1" == "epub" ( - %SPHINXBUILD% -b epub %ALLSPHINXOPTS% %BUILDDIR%/epub - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The epub file is in %BUILDDIR%/epub. - goto end -) - -if "%1" == "latex" ( - %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex - if errorlevel 1 exit /b 1 - echo. - echo.Build finished; the LaTeX files are in %BUILDDIR%/latex. - goto end -) - -if "%1" == "latexpdf" ( - %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex - cd %BUILDDIR%/latex - make all-pdf - cd %~dp0 - echo. - echo.Build finished; the PDF files are in %BUILDDIR%/latex. - goto end -) - -if "%1" == "latexpdfja" ( - %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex - cd %BUILDDIR%/latex - make all-pdf-ja - cd %~dp0 - echo. - echo.Build finished; the PDF files are in %BUILDDIR%/latex. - goto end -) - -if "%1" == "text" ( - %SPHINXBUILD% -b text %ALLSPHINXOPTS% %BUILDDIR%/text - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. 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The XML files are in %BUILDDIR%/xml. - goto end -) - -if "%1" == "pseudoxml" ( - %SPHINXBUILD% -b pseudoxml %ALLSPHINXOPTS% %BUILDDIR%/pseudoxml - if errorlevel 1 exit /b 1 - echo. - echo.Build finished. The pseudo-XML files are in %BUILDDIR%/pseudoxml. - goto end -) - -:end +@ECHO OFF + +REM Command file for Sphinx documentation + +if "%SPHINXBUILD%" == "" ( + set SPHINXBUILD=sphinx-build +) +set BUILDDIR=build +set ALLSPHINXOPTS=-d %BUILDDIR%/doctrees %SPHINXOPTS% source +set I18NSPHINXOPTS=%SPHINXOPTS% source +if NOT "%PAPER%" == "" ( + set ALLSPHINXOPTS=-D latex_paper_size=%PAPER% %ALLSPHINXOPTS% + set I18NSPHINXOPTS=-D latex_paper_size=%PAPER% %I18NSPHINXOPTS% +) + +if "%1" == "" goto help + +if "%1" == "help" ( + :help + echo.Please use `make ^` where ^ is one of + echo. html to make standalone HTML files + echo. dirhtml to make HTML files named index.html in directories + echo. singlehtml to make a single large HTML file + echo. pickle to make pickle files + echo. json to make JSON files + echo. htmlhelp to make HTML files and a HTML help project + echo. qthelp to make HTML files and a qthelp project + echo. devhelp to make HTML files and a Devhelp project + echo. epub to make an epub + echo. latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter + echo. text to make text files + echo. man to make manual pages + echo. texinfo to make Texinfo files + echo. gettext to make PO message catalogs + echo. changes to make an overview over all changed/added/deprecated items + echo. xml to make Docutils-native XML files + echo. pseudoxml to make pseudoxml-XML files for display purposes + echo. linkcheck to check all external links for integrity + echo. doctest to run all doctests embedded in the documentation if enabled + echo. coverage to run coverage check of the documentation if enabled + goto end +) + +if "%1" == "clean" ( + for /d %%i in (%BUILDDIR%\*) do rmdir /q /s %%i + del /q /s %BUILDDIR%\* + goto end +) + + +REM Check if sphinx-build is available and fallback to Python version if any +%SPHINXBUILD% 1>NUL 2>NUL +if errorlevel 9009 goto sphinx_python +goto sphinx_ok + +:sphinx_python + +set SPHINXBUILD=python -m sphinx.__init__ +%SPHINXBUILD% 2> nul +if errorlevel 9009 ( + echo. + echo.The 'sphinx-build' command was not found. Make sure you have Sphinx + echo.installed, then set the SPHINXBUILD environment variable to point + echo.to the full path of the 'sphinx-build' executable. Alternatively you + echo.may add the Sphinx directory to PATH. + echo. + echo.If you don't have Sphinx installed, grab it from + echo.http://sphinx-doc.org/ + exit /b 1 +) + +:sphinx_ok + + +if "%1" == "html" ( + %SPHINXBUILD% -b html %ALLSPHINXOPTS% %BUILDDIR%/html + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The HTML pages are in %BUILDDIR%/html. + goto end +) + +if "%1" == "dirhtml" ( + %SPHINXBUILD% -b dirhtml %ALLSPHINXOPTS% %BUILDDIR%/dirhtml + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The HTML pages are in %BUILDDIR%/dirhtml. + goto end +) + +if "%1" == "singlehtml" ( + %SPHINXBUILD% -b singlehtml %ALLSPHINXOPTS% %BUILDDIR%/singlehtml + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The HTML pages are in %BUILDDIR%/singlehtml. + goto end +) + +if "%1" == "pickle" ( + %SPHINXBUILD% -b pickle %ALLSPHINXOPTS% %BUILDDIR%/pickle + if errorlevel 1 exit /b 1 + echo. + echo.Build finished; now you can process the pickle files. + goto end +) + +if "%1" == "json" ( + %SPHINXBUILD% -b json %ALLSPHINXOPTS% %BUILDDIR%/json + if errorlevel 1 exit /b 1 + echo. + echo.Build finished; now you can process the JSON files. + goto end +) + +if "%1" == "htmlhelp" ( + %SPHINXBUILD% -b htmlhelp %ALLSPHINXOPTS% %BUILDDIR%/htmlhelp + if errorlevel 1 exit /b 1 + echo. + echo.Build finished; now you can run HTML Help Workshop with the ^ +.hhp project file in %BUILDDIR%/htmlhelp. + goto end +) + +if "%1" == "qthelp" ( + %SPHINXBUILD% -b qthelp %ALLSPHINXOPTS% %BUILDDIR%/qthelp + if errorlevel 1 exit /b 1 + echo. + echo.Build finished; now you can run "qcollectiongenerator" with the ^ +.qhcp project file in %BUILDDIR%/qthelp, like this: + echo.^> qcollectiongenerator %BUILDDIR%\qthelp\ADIOS2.qhcp + echo.To view the help file: + echo.^> assistant -collectionFile %BUILDDIR%\qthelp\ADIOS2.ghc + goto end +) + +if "%1" == "devhelp" ( + %SPHINXBUILD% -b devhelp %ALLSPHINXOPTS% %BUILDDIR%/devhelp + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. + goto end +) + +if "%1" == "epub" ( + %SPHINXBUILD% -b epub %ALLSPHINXOPTS% %BUILDDIR%/epub + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The epub file is in %BUILDDIR%/epub. + goto end +) + +if "%1" == "latex" ( + %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex + if errorlevel 1 exit /b 1 + echo. + echo.Build finished; the LaTeX files are in %BUILDDIR%/latex. + goto end +) + +if "%1" == "latexpdf" ( + %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex + cd %BUILDDIR%/latex + make all-pdf + cd %~dp0 + echo. + echo.Build finished; the PDF files are in %BUILDDIR%/latex. + goto end +) + +if "%1" == "latexpdfja" ( + %SPHINXBUILD% -b latex %ALLSPHINXOPTS% %BUILDDIR%/latex + cd %BUILDDIR%/latex + make all-pdf-ja + cd %~dp0 + echo. + echo.Build finished; the PDF files are in %BUILDDIR%/latex. + goto end +) + +if "%1" == "text" ( + %SPHINXBUILD% -b text %ALLSPHINXOPTS% %BUILDDIR%/text + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The text files are in %BUILDDIR%/text. + goto end +) + +if "%1" == "man" ( + %SPHINXBUILD% -b man %ALLSPHINXOPTS% %BUILDDIR%/man + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The manual pages are in %BUILDDIR%/man. + goto end +) + +if "%1" == "texinfo" ( + %SPHINXBUILD% -b texinfo %ALLSPHINXOPTS% %BUILDDIR%/texinfo + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The Texinfo files are in %BUILDDIR%/texinfo. + goto end +) + +if "%1" == "gettext" ( + %SPHINXBUILD% -b gettext %I18NSPHINXOPTS% %BUILDDIR%/locale + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The message catalogs are in %BUILDDIR%/locale. + goto end +) + +if "%1" == "changes" ( + %SPHINXBUILD% -b changes %ALLSPHINXOPTS% %BUILDDIR%/changes + if errorlevel 1 exit /b 1 + echo. + echo.The overview file is in %BUILDDIR%/changes. + goto end +) + +if "%1" == "linkcheck" ( + %SPHINXBUILD% -b linkcheck %ALLSPHINXOPTS% %BUILDDIR%/linkcheck + if errorlevel 1 exit /b 1 + echo. + echo.Link check complete; look for any errors in the above output ^ +or in %BUILDDIR%/linkcheck/output.txt. + goto end +) + +if "%1" == "doctest" ( + %SPHINXBUILD% -b doctest %ALLSPHINXOPTS% %BUILDDIR%/doctest + if errorlevel 1 exit /b 1 + echo. + echo.Testing of doctests in the sources finished, look at the ^ +results in %BUILDDIR%/doctest/output.txt. + goto end +) + +if "%1" == "coverage" ( + %SPHINXBUILD% -b coverage %ALLSPHINXOPTS% %BUILDDIR%/coverage + if errorlevel 1 exit /b 1 + echo. + echo.Testing of coverage in the sources finished, look at the ^ +results in %BUILDDIR%/coverage/python.txt. + goto end +) + +if "%1" == "xml" ( + %SPHINXBUILD% -b xml %ALLSPHINXOPTS% %BUILDDIR%/xml + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The XML files are in %BUILDDIR%/xml. + goto end +) + +if "%1" == "pseudoxml" ( + %SPHINXBUILD% -b pseudoxml %ALLSPHINXOPTS% %BUILDDIR%/pseudoxml + if errorlevel 1 exit /b 1 + echo. + echo.Build finished. The pseudo-XML files are in %BUILDDIR%/pseudoxml. + goto end +) + +:end diff --git a/source/adios2/toolkit/sst/cp/cp_reader.c b/source/adios2/toolkit/sst/cp/cp_reader.c index a0a1bd3a66..b3bdf86c45 100644 --- a/source/adios2/toolkit/sst/cp/cp_reader.c +++ b/source/adios2/toolkit/sst/cp/cp_reader.c @@ -1,2431 +1,2431 @@ -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include -#include - -#include "adios2/common/ADIOSConfig.h" -#include -#include -#include - -#include "sst.h" - -#include "cp_internal.h" -#include - -#define gettid() pthread_self() -#ifdef MUTEX_DEBUG -#define STREAM_MUTEX_LOCK(Stream) \ - { \ - fprintf(stderr, "(PID %lx, TID %lx) CP_READER Trying lock line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - pthread_mutex_lock(&Stream->DataLock); \ - Stream->Locked++; \ - fprintf(stderr, "(PID %lx, TID %lx) CP_READER Got lock\n", \ - (long)getpid(), (long)gettid()); \ - } - -#define STREAM_MUTEX_UNLOCK(Stream) \ - { \ - fprintf(stderr, "(PID %lx, TID %lx) CP_READER UNlocking line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - Stream->Locked--; \ - pthread_mutex_unlock(&Stream->DataLock); \ - } -#define STREAM_CONDITION_WAIT(Stream) \ - { \ - fprintf( \ - stderr, \ - "(PID %lx, TID %lx) CP_READER Dropping Condition Lock line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - Stream->Locked = 0; \ - pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ - fprintf( \ - stderr, \ - "(PID %lx, TID %lx) CP_READER Acquired Condition Lock line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - Stream->Locked = 1; \ - } -#define STREAM_CONDITION_SIGNAL(Stream) \ - { \ - assert(Stream->Locked == 1); \ - fprintf(stderr, \ - "(PID %lx, TID %lx) CP_READER Signalling Condition line %d\n", \ - (long)getpid(), (long)gettid(), __LINE__); \ - pthread_cond_signal(&Stream->DataCondition); \ - } - -#define STREAM_ASSERT_LOCKED(Stream) \ - { \ - assert(Stream->Locked == 1); \ - } -#else -#define STREAM_MUTEX_LOCK(Stream) \ - { \ - pthread_mutex_lock(&Stream->DataLock); \ - } -#define STREAM_MUTEX_UNLOCK(Stream) \ - { \ - pthread_mutex_unlock(&Stream->DataLock); \ - } -#define STREAM_CONDITION_WAIT(Stream) \ - { \ - pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ - } -#define STREAM_CONDITION_SIGNAL(Stream) \ - { \ - pthread_cond_signal(&Stream->DataCondition); \ - } -#define STREAM_ASSERT_LOCKED(Stream) -#endif - -static char *readContactInfoFile(const char *Name, SstStream Stream, - int Timeout) -{ - size_t len = strlen(Name) + strlen(SST_POSTFIX) + 1; - char *FileName = malloc(len); - int Badfile = 0; - int ZeroCount = 0; - FILE *WriterInfo; - int64_t TimeoutRemainingMsec = Timeout * 1000; - int64_t WaitWarningRemainingMsec = 5 * 1000; - long SleepInterval = 100000; - snprintf(FileName, len, "%s" SST_POSTFIX, Name); - CP_verbose(Stream, PerRankVerbose, - "Looking for writer contact in file %s, with timeout %d secs\n", - FileName, Timeout); -redo: - WriterInfo = fopen(FileName, "r"); - while (!WriterInfo) - { - // CMusleep(Stream->CPInfo->cm, SleepInterval); - usleep(SleepInterval); - TimeoutRemainingMsec -= (SleepInterval / 1000); - WaitWarningRemainingMsec -= (SleepInterval / 1000); - if (WaitWarningRemainingMsec == 0) - { - fprintf(stderr, - "ADIOS2 SST Engine waiting for contact information " - "file %s to be created\n", - Name); - } - if (TimeoutRemainingMsec <= 0) - { - free(FileName); - return NULL; - } - WriterInfo = fopen(FileName, "r"); - } - struct stat Buf; - fstat(fileno(WriterInfo), &Buf); - int Size = Buf.st_size; - if (Size == 0) - { - // Try again, it might look zero momentarily, but shouldn't stay that - // way. - ZeroCount++; - if (ZeroCount < 5) - { - // We'll give it several attempts (and some time) to go non-zero - usleep(SleepInterval); - goto redo; - } - } - - if (Size < strlen(SSTMAGICV0)) - { - Badfile++; - } - else - { - char Tmp[strlen(SSTMAGICV0)]; - if (fread(Tmp, strlen(SSTMAGICV0), 1, WriterInfo) != 1) - { - fprintf(stderr, - "Filesystem read failed in SST Open, failing operation\n"); - fclose(WriterInfo); - Badfile++; - } - Size -= strlen(SSTMAGICV0); - if (strncmp(Tmp, SSTMAGICV0, strlen(SSTMAGICV0)) != 0) - { - Badfile++; - } - } - if (Badfile) - { - fprintf(stderr, - "!!! File %s is not an ADIOS2 SST Engine Contact file\n", - FileName); - free(FileName); - fclose(WriterInfo); - return NULL; - } - free(FileName); - char *Buffer = calloc(1, Size + 1); - if (fread(Buffer, Size, 1, WriterInfo) != 1) - { - fprintf(stderr, - "Filesystem read failed in SST Open, failing operation\n"); - free(Buffer); - fclose(WriterInfo); - return NULL; - } - fclose(WriterInfo); - return Buffer; -} - -static char *readContactInfoScreen(const char *Name, SstStream Stream) -{ - char Input[10240]; - char *Skip = Input; - fprintf(stdout, - "Please enter the contact information associated with SST " - "input stream \"%s\":\n", - Name); - if (fgets(Input, sizeof(Input), stdin) == NULL) - { - fprintf(stdout, "Read from stdin failed, exiting\n"); - exit(1); - } - while (isspace(*Skip)) - Skip++; - return strdup(Skip); -} - -static char *readContactInfo(const char *Name, SstStream Stream, int Timeout) -{ - switch (Stream->RegistrationMethod) - { - case SstRegisterFile: - return readContactInfoFile(Name, Stream, Timeout); - case SstRegisterScreen: - return readContactInfoScreen(Name, Stream); - case SstRegisterCloud: - /* not yet */ - return NULL; - } - return NULL; -} - -// ReaderConnCloseHandler is called by the network handler thread in -// response to the failure of a network connection to the writer. -extern void ReaderConnCloseHandler(CManager cm, CMConnection ClosedConn, - void *client_data) -{ - PERFSTUBS_TIMER_START_FUNC(timer); - SstStream Stream = (SstStream)client_data; - int FailedPeerRank = -1; - STREAM_MUTEX_LOCK(Stream); - CP_verbose(Stream, PerRankVerbose, "Reader-side close handler invoked\n"); - if ((Stream->Status == Destroyed) || (!Stream->ConnectionsToWriter)) - { - STREAM_MUTEX_UNLOCK(Stream); - return; - } - for (int i = 0; i < Stream->WriterCohortSize; i++) - { - if (Stream->ConnectionsToWriter[i].CMconn == ClosedConn) - { - FailedPeerRank = i; - } - } - - if (Stream->Status == Established) - { - if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && - (Stream->Rank != 0)) - { - CP_verbose(Stream, PerRankVerbose, - "Reader-side Rank received a " - "connection-close event during normal " - "operations, but might be part of shutdown " - "Don't change stream status.\n"); - /* if this happens and *is* a failure, we'll get the status from - * rank 0 later */ - } - else - { - /* - * tag our reader instance as failed, IFF this came from someone we - * should have gotten a CLOSE from. I.E. a reverse peer - */ - CP_verbose(Stream, PerRankVerbose, - "Reader-side Rank received a " - "connection-close event during normal " - "operations, peer likely failed\n"); - if (FailedPeerRank == Stream->FailureContactRank) - { - Stream->Status = PeerFailed; - STREAM_CONDITION_SIGNAL(Stream); - } - } - CP_verbose( - Stream, PerRankVerbose, - "The close was for connection to writer peer %d, notifying DP\n", - FailedPeerRank); - STREAM_MUTEX_UNLOCK(Stream); - /* notify DP of failure. This should terminate any waits currently - * pending in the DP for that rank */ - Stream->DP_Interface->notifyConnFailure(&Svcs, Stream->DP_Stream, - FailedPeerRank); - } - else if (Stream->Status == PeerClosed) - { - /* ignore this. We expect a close after the connection is marked closed - */ - CP_verbose(Stream, PerRankVerbose, - "Reader-side Rank received a " - "connection-close event after close, " - "not unexpected\n"); - STREAM_MUTEX_UNLOCK(Stream); - // Don't notify DP, because this is part of normal shutdown and we don't - // want to kill pending reads - } - else if (Stream->Status == PeerFailed) - { - CP_verbose( - Stream, PerRankVerbose, - "Reader-side Rank received a " - "connection-close event after PeerFailed, already notified DP \n"); - // Don't notify DP, because we already have */ - STREAM_MUTEX_UNLOCK(Stream); - } - else - { - CP_verbose(Stream, CriticalVerbose, - "Got an unexpected connection close event\n"); - CP_verbose(Stream, PerStepVerbose, - "Reader-side Rank received a " - "connection-close event in unexpected " - "status %s\n", - SSTStreamStatusStr[Stream->Status]); - STREAM_MUTEX_UNLOCK(Stream); - } - PERFSTUBS_TIMER_STOP_FUNC(timer); -} - -// SstCurrentStep is only called by the main program thread and -// needs no locking as it only accesses data set by the main thread -extern long SstCurrentStep(SstStream Stream) { return Stream->ReaderTimestep; } - -static void releasePriorTimesteps(SstStream Stream, long Latest); -static void sendOneToEachWriterRank(SstStream s, CMFormat f, void *Msg, - void **WS_StreamPtr); - -static void **ParticipateInReaderInitDataExchange(SstStream Stream, - void *dpInfo, - void **ret_data_block) -{ - - struct _CP_DP_PairInfo combined_init; - struct _CP_ReaderInitInfo cpInfo; - - struct _CP_DP_PairInfo **pointers; - - cpInfo.ContactInfo = CP_GetContactString(Stream, NULL); - cpInfo.ReaderID = Stream; - - combined_init.CP_Info = (void **)&cpInfo; - combined_init.DP_Info = dpInfo; - - pointers = (struct _CP_DP_PairInfo **)CP_consolidateDataToRankZero( - Stream, &combined_init, Stream->CPInfo->PerRankReaderInfoFormat, - ret_data_block); - free(cpInfo.ContactInfo); - return (void **)pointers; -} - -static int HasAllPeers(SstStream Stream) -{ - int i, StillWaiting = 0; - if (!Stream->ConnectionsToWriter) - { - CP_verbose(Stream, PerRankVerbose, - "(PID %lx, TID %lx) Waiting for first Peer notification\n", - (long)gettid(), (long)getpid()); - return 0; - } - i = 0; - while (Stream->Peers[i] != -1) - { - int peer = Stream->Peers[i]; - if (Stream->ConnectionsToWriter[peer].CMconn == NULL) - StillWaiting++; - i++; - } - if (StillWaiting == 0) - { - CP_verbose(Stream, PerRankVerbose, - "Rank %d has all forward peer connections\n", Stream->Rank); - return 1; - } - else - { - CP_verbose(Stream, PerRankVerbose, - "Rank %d waiting for %d forward peer connections\n", - Stream->Rank, StillWaiting); - return 0; - } -} - -attr_list ContactWriter(SstStream Stream, char *Filename, SstParams Params, - SMPI_Comm comm, CMConnection *conn_p, - void **WriterFileID_p) -{ - int DataSize = 0; - attr_list RetVal = NULL; - - if (Stream->Rank == 0) - { - char *Writer0Contact = - readContactInfo(Filename, Stream, Params->OpenTimeoutSecs); - char *CMContactString = NULL; - CMConnection conn = NULL; - attr_list WriterRank0Contact; - - if (Writer0Contact) - { - - CMContactString = - malloc(strlen(Writer0Contact)); /* at least long enough */ - sscanf(Writer0Contact, "%p:%s", WriterFileID_p, CMContactString); - // printf("Writer contact info is fileID %p, contact info - // %s\n", - // WriterFileID, CMContactString); - free(Writer0Contact); - - if (globalNetinfoCallback) - { - (globalNetinfoCallback)(1, CP_GetContactString(Stream, NULL), - IPDiagString); - (globalNetinfoCallback)(2, CMContactString, NULL); - } - WriterRank0Contact = attr_list_from_string(CMContactString); - conn = CMget_conn(Stream->CPInfo->SharedCM->cm, WriterRank0Contact); - free_attr_list(WriterRank0Contact); - } - if (conn) - { - DataSize = strlen(CMContactString) + 1; - *conn_p = conn; - } - else - { - DataSize = 0; - *conn_p = NULL; - } - SMPI_Bcast(&DataSize, 1, SMPI_INT, 0, Stream->mpiComm); - if (DataSize != 0) - { - SMPI_Bcast(CMContactString, DataSize, SMPI_CHAR, 0, - Stream->mpiComm); - RetVal = attr_list_from_string(CMContactString); - } - if (CMContactString) - free(CMContactString); - } - else - { - SMPI_Bcast(&DataSize, 1, SMPI_INT, 0, Stream->mpiComm); - if (DataSize != 0) - { - char *Buffer = malloc(DataSize); - SMPI_Bcast(Buffer, DataSize, SMPI_CHAR, 0, Stream->mpiComm); - RetVal = attr_list_from_string(Buffer); - free(Buffer); - } - } - return RetVal; -} - -// SstReaderOpen is an SST reader entry point, called only by the -// main program thread It must be called by all ranks, and as it -// creates the only shared data structure, no locking is necessary -// prior to the CMCondition_wait() that is triggered in response to -// reader regsitration. -SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) -{ - SstStream Stream; - void *dpInfo; - struct _CP_DP_PairInfo **pointers; - void *data_block; - void *free_block; - writer_data_t ReturnData; - struct _ReaderActivateMsg Msg; - struct timeval Start, Stop, Diff; - char *Filename = strdup(Name); - CMConnection rank0_to_rank0_conn = NULL; - void *WriterFileID; - char NeededDataPlane[32] = { - 0}; // Don't name a data plane longer than 31 chars - - Stream = CP_newStream(); - Stream->Role = ReaderRole; - Stream->mpiComm = comm; - - SMPI_Comm_rank(Stream->mpiComm, &Stream->Rank); - SMPI_Comm_size(Stream->mpiComm, &Stream->CohortSize); - - CP_validateParams(Stream, Params, 0 /* reader */); - Stream->ConfigParams = Params; - - Stream->CPInfo = CP_getCPInfo(Stream->ConfigParams->ControlModule); - - Stream->FinalTimestep = INT_MAX; /* set this on close */ - Stream->LastDPNotifiedTimestep = -1; - - gettimeofday(&Start, NULL); - - attr_list WriterContactAttributes = ContactWriter( - Stream, Filename, Params, comm, &rank0_to_rank0_conn, &WriterFileID); - - if (WriterContactAttributes == NULL) - { - SstStreamDestroy(Stream); - free(Stream); - free(Filename); - return NULL; - } - - if (Stream->Rank == 0) - { - struct _DPQueryMsg DPQuery; - memset(&DPQuery, 0, sizeof(DPQuery)); - - DPQuery.WriterFile = WriterFileID; - DPQuery.WriterResponseCondition = - CMCondition_get(Stream->CPInfo->SharedCM->cm, rank0_to_rank0_conn); - - CMCondition_set_client_data(Stream->CPInfo->SharedCM->cm, - DPQuery.WriterResponseCondition, - &NeededDataPlane[0]); - - if (CMwrite(rank0_to_rank0_conn, - Stream->CPInfo->SharedCM->DPQueryFormat, &DPQuery) != 1) - { - CP_verbose( - Stream, CriticalVerbose, - "DPQuery message failed to send to writer in SstReaderOpen\n"); - } - - /* wait for "go" from writer */ - CP_verbose( - Stream, PerRankVerbose, - "Waiting for writer DPResponse message in SstReadOpen(\"%s\")\n", - Filename, DPQuery.WriterResponseCondition); - int result = CMCondition_wait(Stream->CPInfo->SharedCM->cm, - DPQuery.WriterResponseCondition); - if (result == 0) - { - fprintf(stderr, "The writer exited before contact could be made, " - "SST Open failed.\n"); - return NULL; - } - CP_verbose(Stream, PerRankVerbose, - "finished wait writer DPresponse message in read_open, " - "WRITER is using \"%s\" DataPlane\n", - &NeededDataPlane[0]); - - // NeededDP should now contain the name of the dataplane the writer is - // using - SMPI_Bcast(&NeededDataPlane[0], sizeof(NeededDataPlane), SMPI_CHAR, 0, - Stream->mpiComm); - } - else - { - SMPI_Bcast(&NeededDataPlane[0], sizeof(NeededDataPlane), SMPI_CHAR, 0, - Stream->mpiComm); - } - { - char *RequestedDP = Stream->ConfigParams->DataTransport; - Stream->ConfigParams->DataTransport = strdup(&NeededDataPlane[0]); - Stream->DP_Interface = - SelectDP(&Svcs, Stream, Stream->ConfigParams, Stream->Rank); - if (Stream->DP_Interface) - if (strcmp(Stream->DP_Interface->DPName, &NeededDataPlane[0]) != 0) - { - fprintf(stderr, - "The writer is using the %s DataPlane for SST data " - "transport, but the reader has failed to load this " - "transport. Communication cannot occur. See the SST " - "DataTransport engine parameter to force a match.", - NeededDataPlane); - return NULL; - } - if (RequestedDP) - free(RequestedDP); - } - - FinalizeCPInfo(Stream->CPInfo, Stream->DP_Interface); - - Stream->DP_Stream = Stream->DP_Interface->initReader( - &Svcs, Stream, &dpInfo, Stream->ConfigParams, WriterContactAttributes, - &Stream->Stats); - - free_attr_list(WriterContactAttributes); - - pointers = (struct _CP_DP_PairInfo **)ParticipateInReaderInitDataExchange( - Stream, dpInfo, &data_block); - - if (Stream->Rank == 0) - { - struct _CombinedWriterInfo WriterData; - struct _ReaderRegisterMsg ReaderRegister; - - memset(&ReaderRegister, 0, sizeof(ReaderRegister)); - memset(&WriterData, 0, sizeof(WriterData)); - WriterData.WriterCohortSize = -1; - ReaderRegister.WriterFile = WriterFileID; - ReaderRegister.WriterResponseCondition = - CMCondition_get(Stream->CPInfo->SharedCM->cm, rank0_to_rank0_conn); - ReaderRegister.ReaderCohortSize = Stream->CohortSize; - switch (Stream->ConfigParams->SpeculativePreloadMode) - { - case SpecPreloadOff: - case SpecPreloadOn: - ReaderRegister.SpecPreload = - (SpeculativePreloadMode) - Stream->ConfigParams->SpeculativePreloadMode; - break; - case SpecPreloadAuto: - ReaderRegister.SpecPreload = SpecPreloadOff; - if (Stream->CohortSize <= - Stream->ConfigParams->SpecAutoNodeThreshold) - { - ReaderRegister.SpecPreload = SpecPreloadOn; - } - break; - } - - ReaderRegister.CP_ReaderInfo = - malloc(ReaderRegister.ReaderCohortSize * sizeof(void *)); - ReaderRegister.DP_ReaderInfo = - malloc(ReaderRegister.ReaderCohortSize * sizeof(void *)); - for (int i = 0; i < ReaderRegister.ReaderCohortSize; i++) - { - ReaderRegister.CP_ReaderInfo[i] = - (CP_ReaderInitInfo)pointers[i]->CP_Info; - ReaderRegister.DP_ReaderInfo[i] = pointers[i]->DP_Info; - } - free(pointers); - - /* the response value is set in the handler */ - volatile struct _WriterResponseMsg *response = NULL; - CMCondition_set_client_data(Stream->CPInfo->SharedCM->cm, - ReaderRegister.WriterResponseCondition, - &response); - - if (CMwrite(rank0_to_rank0_conn, - Stream->CPInfo->SharedCM->ReaderRegisterFormat, - &ReaderRegister) != 1) - { - CP_verbose(Stream, CriticalVerbose, - "Message failed to send to writer in SstReaderOpen\n"); - } - free(ReaderRegister.CP_ReaderInfo); - free(ReaderRegister.DP_ReaderInfo); - - /* wait for "go" from writer */ - CP_verbose( - Stream, PerRankVerbose, - "Waiting for writer response message in SstReadOpen(\"%s\")\n", - Filename, ReaderRegister.WriterResponseCondition); - int result = CMCondition_wait(Stream->CPInfo->SharedCM->cm, - ReaderRegister.WriterResponseCondition); - if (result == 0) - { - fprintf(stderr, "The writer exited before the SST Reader Open " - "could be completed.\n"); - return NULL; - } - CP_verbose(Stream, PerRankVerbose, - "finished wait writer response message in read_open\n"); - - if (response) - { - WriterData.WriterCohortSize = response->WriterCohortSize; - WriterData.WriterConfigParams = response->WriterConfigParams; - WriterData.StartingStepNumber = response->NextStepNumber; - WriterData.CP_WriterInfo = response->CP_WriterInfo; - WriterData.DP_WriterInfo = response->DP_WriterInfo; - } - ReturnData = CP_distributeDataFromRankZero( - Stream, &WriterData, Stream->CPInfo->CombinedWriterInfoFormat, - &free_block); - } - else - { - ReturnData = CP_distributeDataFromRankZero( - Stream, NULL, Stream->CPInfo->CombinedWriterInfoFormat, - &free_block); - } - - free(data_block); - - if (ReturnData->WriterCohortSize == -1) - { - /* Rank 0 found no writer at that contact point, fail the stream */ - free(free_block); - return NULL; - } - - if (Stream->Rank == 0) - { - CP_verbose(Stream, SummaryVerbose, - "Opening Reader Stream.\nWriter stream params are:\n"); - CP_dumpParams(Stream, ReturnData->WriterConfigParams, - 0 /* writer side */); - CP_verbose(Stream, SummaryVerbose, "Reader stream params are:\n"); - CP_dumpParams(Stream, Stream->ConfigParams, 1 /* reader side */); - } - - // printf("I am reader rank %d, my info on writers is:\n", Stream->Rank); - // FMdump_data(FMFormat_of_original(Stream->CPInfo->combined_writer_Format), - // ReturnData, 1024000); - // printf("\n"); - - Stream->WriterCohortSize = ReturnData->WriterCohortSize; - Stream->WriterConfigParams = ReturnData->WriterConfigParams; - if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) && - (Stream->Rank == 0)) - { - CP_verbose(Stream, SummaryVerbose, - "Writer is doing FFS-based marshalling\n"); - } - if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalBP) && - (Stream->Rank == 0)) - { - CP_verbose(Stream, SummaryVerbose, - "Writer is doing BP-based marshalling\n"); - } - if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && - (Stream->Rank == 0)) - { - CP_verbose( - Stream, SummaryVerbose, - "Writer is using Minimum Connection Communication pattern (min)\n"); - } - if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) && - (Stream->Rank == 0)) - { - CP_verbose(Stream, SummaryVerbose, - "Writer is using Peer-based Communication pattern (peer)\n"); - } - STREAM_MUTEX_LOCK(Stream); - Stream->ReaderTimestep = ReturnData->StartingStepNumber - 1; - - if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) - { - /* - * Wait for connections and messages from writer side peers - */ - getPeerArrays(Stream->CohortSize, Stream->Rank, - Stream->WriterCohortSize, &Stream->Peers, NULL); - - while (!HasAllPeers(Stream)) - { - /* wait until we get the timestep metadata or something else changes - */ - STREAM_CONDITION_WAIT(Stream); - } - } - else - { - if (!Stream->ConnectionsToWriter) - { - Stream->ConnectionsToWriter = - calloc(sizeof(CP_PeerConnection), ReturnData->WriterCohortSize); - } - } - - for (int i = 0; i < ReturnData->WriterCohortSize; i++) - { - attr_list attrs = - attr_list_from_string(ReturnData->CP_WriterInfo[i]->ContactInfo); - Stream->ConnectionsToWriter[i].ContactList = attrs; - Stream->ConnectionsToWriter[i].RemoteStreamID = - ReturnData->CP_WriterInfo[i]->WriterID; - } - - // Deref the original connection to writer rank 0 (might still be open as a - // peer) - if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) - { - if (rank0_to_rank0_conn) - { - CMConnection_dereference(rank0_to_rank0_conn); - } - } - else - { - /* only rely on the rank 0 to rank 0 that we already have (if we're rank - * 0) */ - if (rank0_to_rank0_conn) - { - CMConnection conn = rank0_to_rank0_conn; - Stream->ConnectionsToWriter[0].CMconn = conn; - CMconn_register_close_handler(conn, ReaderConnCloseHandler, - (void *)Stream); - } - } - Stream->Status = Established; - gettimeofday(&Stop, NULL); - timersub(&Stop, &Start, &Diff); - Stream->OpenTimeSecs = (double)Diff.tv_usec / 1e6 + Diff.tv_sec; - gettimeofday(&Stream->ValidStartTime, NULL); - Stream->Filename = Filename; - Stream->ParamsBlock = free_block; - STREAM_MUTEX_UNLOCK(Stream); - AddToLastCallFreeList(Stream); - Stream->DP_Interface->provideWriterDataToReader( - &Svcs, Stream->DP_Stream, ReturnData->WriterCohortSize, - Stream->ConnectionsToWriter, ReturnData->DP_WriterInfo); - CP_verbose(Stream, PerRankVerbose, - "Sending Reader Activate messages to writer\n"); - memset(&Msg, 0, sizeof(Msg)); - sendOneToEachWriterRank(Stream, - Stream->CPInfo->SharedCM->ReaderActivateFormat, - &Msg, &Msg.WSR_Stream); - CP_verbose(Stream, PerStepVerbose, - "Finish opening Stream \"%s\", starting with Step number %d\n", - Filename, ReturnData->StartingStepNumber); - - return Stream; -} - -// SstReaderGetParams is an SST entry point only called by the main -// program thread. It can only be called after initialization and -// only accesses data installed durinig initialization, it needs no -// locking. -extern void SstReaderGetParams(SstStream Stream, - SstMarshalMethod *WriterMarshalMethod, - int *WriterIsRowMajor) -{ - *WriterMarshalMethod = - (SstMarshalMethod)Stream->WriterConfigParams->MarshalMethod; - *WriterIsRowMajor = Stream->WriterConfigParams->IsRowMajor; -} - -/* - * CP_PeerSetupHandler is called by the network handler thread in - * response to incoming PeerSetup messages to setup the reader-side - * Peer list - */ -extern void CP_PeerSetupHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) -{ - PERFSTUBS_TIMER_START_FUNC(timer); - SstStream Stream; - struct _PeerSetupMsg *Msg = (struct _PeerSetupMsg *)Msg_v; - Stream = (SstStream)Msg->RS_Stream; - STREAM_MUTEX_LOCK(Stream); - CP_verbose(Stream, TraceVerbose, - "Received peer setup from rank %d, conn %p\n", Msg->WriterRank, - conn); - if (!Stream->ConnectionsToWriter) - { - CP_verbose(Stream, TraceVerbose, "Allocating connections to writer\n"); - Stream->ConnectionsToWriter = - calloc(sizeof(CP_PeerConnection), Msg->WriterCohortSize); - } - CP_verbose(Stream, TraceVerbose, - "Received peer setup from rank %d, conn %p\n", Msg->WriterRank, - conn); - if (Msg->WriterRank != -1) - { - Stream->ConnectionsToWriter[Msg->WriterRank].CMconn = conn; - CMConnection_add_reference(conn); - Stream->FailureContactRank = Msg->WriterRank; - } - CMconn_register_close_handler(conn, ReaderConnCloseHandler, (void *)Stream); - STREAM_CONDITION_SIGNAL(Stream); - STREAM_MUTEX_UNLOCK(Stream); - PERFSTUBS_TIMER_STOP_FUNC(timer); -} - -void queueTimestepMetadataMsgAndNotify(SstStream Stream, - struct _TimestepMetadataMsg *tsm, - CMConnection conn) -{ - STREAM_ASSERT_LOCKED(Stream); - if (tsm->Timestep < Stream->DiscardPriorTimestep) - { - struct _ReleaseTimestepMsg Msg; - memset(&Msg, 0, sizeof(Msg)); - Msg.Timestep = tsm->Timestep; - - /* - * send each writer rank a release for this timestep (actually goes to - * WSR Streams) - */ - if (tsm->Metadata != NULL) - { - CP_verbose(Stream, PerStepVerbose, - "Sending ReleaseTimestep message for PRIOR DISCARD " - "timestep %d, one to each writer\n", - tsm->Timestep); - sendOneToEachWriterRank( - Stream, Stream->CPInfo->SharedCM->ReleaseTimestepFormat, &Msg, - &Msg.WSR_Stream); - } - else - { - CP_verbose(Stream, PerStepVerbose, - "Received discard notice for timestep %d, " - "ignoring in PRIOR DISCARD\n", - tsm->Timestep); - } - } - - struct _TimestepMetadataList *New = malloc(sizeof(struct _RegisterQueue)); - New->MetadataMsg = tsm; - New->Next = NULL; - if (Stream->Timesteps) - { - struct _TimestepMetadataList *Last = Stream->Timesteps; - while (Last->Next) - { - Last = Last->Next; - } - Last->Next = New; - } - else - { - Stream->Timesteps = New; - } - Stream->Stats.TimestepMetadataReceived++; - if (tsm->Metadata) - { - Stream->Stats.MetadataBytesReceived += - (tsm->Metadata->DataSize + tsm->AttributeData->DataSize); - } - CP_verbose(Stream, PerRankVerbose, - "Received a Timestep metadata message for timestep %d, " - "signaling condition\n", - tsm->Timestep); - - STREAM_CONDITION_SIGNAL(Stream); - if ((Stream->Rank == 0) && - (Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && - (Stream->ConfigParams->AlwaysProvideLatestTimestep)) - { - /* - * IFF we are in CommMin mode, AND we are to always provide - * the newest timestep, then when a new timestep arrives then - * we want to release timesteps that are older than it, NOT - * INCLUDING ANY TIMESTEP IN CURRENT USE. - */ - CP_verbose(Stream, TraceVerbose, - "Got a new timestep in AlwaysProvideLatestTimestep mode, " - "discard older than %d\n", - tsm->Timestep); - releasePriorTimesteps(Stream, tsm->Timestep); - } -} - -struct _SstMetaMetaBlockInternal -{ - size_t TimestepAdded; - char *BlockData; - size_t BlockSize; - char *ID; - size_t IDSize; -}; - -void AddFormatsToMetaMetaInfo(SstStream Stream, - struct _TimestepMetadataMsg *Msg) -{ - FFSFormatList Formats = Msg->Formats; - STREAM_ASSERT_LOCKED(Stream); - while (Formats) - { - Stream->InternalMetaMetaInfo = - realloc(Stream->InternalMetaMetaInfo, - (sizeof(struct _SstMetaMetaBlockInternal) * - (Stream->InternalMetaMetaCount + 1))); - struct _SstMetaMetaBlockInternal *NewInfo = - &Stream->InternalMetaMetaInfo[Stream->InternalMetaMetaCount]; - Stream->InternalMetaMetaCount++; - NewInfo->TimestepAdded = Msg->Timestep; - NewInfo->ID = malloc(Formats->FormatIDRepLen); - NewInfo->IDSize = Formats->FormatIDRepLen; - NewInfo->BlockData = malloc(Formats->FormatServerRepLen); - NewInfo->BlockSize = Formats->FormatServerRepLen; - memcpy(NewInfo->ID, Formats->FormatIDRep, Formats->FormatIDRepLen); - memcpy(NewInfo->BlockData, Formats->FormatServerRep, - Formats->FormatServerRepLen); - Formats = Formats->Next; - } -} - -void AddAttributesToAttrDataList(SstStream Stream, - struct _TimestepMetadataMsg *Msg) -{ - if (Stream->AttrsRetrieved) - { - int i = 0; - while (Stream->InternalAttrDataInfo && - Stream->InternalAttrDataInfo[i].BlockData) - { - free(Stream->InternalAttrDataInfo[i].BlockData); - i++; - } - free(Stream->InternalAttrDataInfo); - Stream->InternalAttrDataInfo = NULL; - Stream->InternalAttrDataCount = 0; - Stream->AttrsRetrieved = 0; - } - if (Msg->AttributeData->DataSize == 0) - return; - - Stream->InternalAttrDataInfo = realloc( - Stream->InternalAttrDataInfo, - (sizeof(struct _SstBlock) * (Stream->InternalAttrDataCount + 2))); - struct _SstBlock *NewInfo = - &Stream->InternalAttrDataInfo[Stream->InternalAttrDataCount]; - Stream->InternalAttrDataCount++; - NewInfo->BlockData = malloc(Msg->AttributeData->DataSize); - NewInfo->BlockSize = Msg->AttributeData->DataSize; - memcpy(NewInfo->BlockData, Msg->AttributeData->block, - Msg->AttributeData->DataSize); - memset(&Stream->InternalAttrDataInfo[Stream->InternalAttrDataCount], 0, - sizeof(struct _SstData)); -} - -// CP_TimestepMetadataHandler is called by the network handler thread -// to handle incoming TimestepMetadata messages -void CP_TimestepMetadataHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) -{ - PERFSTUBS_TIMER_START_FUNC(timer); - SstStream Stream; - struct _TimestepMetadataMsg *Msg = (struct _TimestepMetadataMsg *)Msg_v; - Stream = (SstStream)Msg->RS_Stream; - STREAM_MUTEX_LOCK(Stream); - if ((Stream->Rank != 0) || - (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer)) - { - /* All ranks are getting this */ - if (Msg->Metadata == NULL) - { - CP_verbose( - Stream, PerRankVerbose, - "Received a message that timestep %d has been discarded\n", - Msg->Timestep); - - /* - * before discarding, install any precious metadata from this - * message - */ - if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) - { - FFSMarshalInstallPreciousMetadata(Stream, Msg); - } - else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) - { - AddFormatsToMetaMetaInfo(Stream, Msg); - AddAttributesToAttrDataList(Stream, Msg); - } - STREAM_MUTEX_UNLOCK(Stream); - - return; - } - else - { - CP_verbose( - Stream, PerStepVerbose, - "Received an incoming metadata message for timestep %d\n", - Msg->Timestep); - } - /* arrange for this message data to stay around */ - CMtake_buffer(cm, Msg); - - queueTimestepMetadataMsgAndNotify(Stream, Msg, conn); - } - else - { - /* I must be rank 0 and only I got this, I'll need to distribute it to - * everyone */ - /* arrange for this message data to stay around */ - CMtake_buffer(cm, Msg); - - queueTimestepMetadataMsgAndNotify(Stream, Msg, conn); - } - STREAM_MUTEX_UNLOCK(Stream); - PERFSTUBS_TIMER_STOP_FUNC(timer); -} - -// CP_WriterResponseHandler is called by the network handler thread to -// handle WriterResponse messages. One of these will be sent to rank0 -// reader from rank0 writer in response to the ReaderRegister message. -// It will find rank0 writer in CMCondition_wait(). It's only action -// is to associate the incoming response message to the CMcondition -// we're waiting on,m so no locking is necessary. -void CP_WriterResponseHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) -{ - PERFSTUBS_REGISTER_THREAD(); - PERFSTUBS_TIMER_START_FUNC(timer); - struct _WriterResponseMsg *Msg = (struct _WriterResponseMsg *)Msg_v; - struct _WriterResponseMsg **response_ptr; - // fprintf(stderr, "Received a writer_response message for condition - // %d\n", - // Msg->WriterResponseCondition); - // fprintf(stderr, "The responding writer has cohort of size %d :\n", - // Msg->writer_CohortSize); - // for (int i = 0; i < Msg->writer_CohortSize; i++) { - // fprintf(stderr, " rank %d CP contact info: %s, %p\n", i, - // Msg->CP_WriterInfo[i]->ContactInfo, - // Msg->CP_WriterInfo[i]->WriterID); - // } - - /* arrange for this message data to stay around */ - CMtake_buffer(cm, Msg); - - /* attach the message to the CMCondition so it an be retrieved by the main - * thread */ - response_ptr = - CMCondition_get_client_data(cm, Msg->WriterResponseCondition); - *response_ptr = Msg; - - /* wake the main thread */ - CMCondition_signal(cm, Msg->WriterResponseCondition); - PERFSTUBS_TIMER_STOP_FUNC(timer); -} - -// CP_DPQueryResponseHandler is called by the network handler thread to -// handle DPQueryResponse messages. One of these will be sent to rank0 -// reader from rank0 writer in response to the DPQuery message. -// It will find rank0 writer in CMCondition_wait(). It's only action -// is to associate the incoming response message to the CMcondition -// we're waiting on,m so no locking is necessary. -void CP_DPQueryResponseHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) -{ - PERFSTUBS_REGISTER_THREAD(); - PERFSTUBS_TIMER_START_FUNC(timer); - struct _DPQueryResponseMsg *Msg = (struct _DPQueryResponseMsg *)Msg_v; - char *NeededDP_ptr; - - // fprintf(stderr, "Received a writer_response message for condition - // %d\n", - // Msg->WriterResponseCondition); - // fprintf(stderr, "The responding writer has cohort of size %d :\n", - // Msg->writer_CohortSize); - // for (int i = 0; i < Msg->writer_CohortSize; i++) { - // fprintf(stderr, " rank %d CP contact info: %s, %p\n", i, - // Msg->CP_WriterInfo[i]->ContactInfo, - // Msg->CP_WriterInfo[i]->WriterID); - // } - - /* attach the message to the CMCondition so it an be retrieved by the main - * thread */ - NeededDP_ptr = - CMCondition_get_client_data(cm, Msg->WriterResponseCondition); - strcpy(NeededDP_ptr, Msg->OperativeDP); - - /* wake the main thread */ - CMCondition_signal(cm, Msg->WriterResponseCondition); - PERFSTUBS_TIMER_STOP_FUNC(timer); -} - -// CP_WriterCloseHandler is called by the network handler thread to -// handle WriterResponse messages. One of these will be sent to rank0 -// reader from rank0 writer in response to the ReaderRegister message. -// It will find rank0 writer in CMCondition_wait(). It's only action -// is to associate the incoming response message to the CMcondition -// we're waiting on, so no locking is necessary. -extern void CP_WriterCloseHandler(CManager cm, CMConnection conn, void *Msg_v, - void *client_data, attr_list attrs) -{ - PERFSTUBS_TIMER_START_FUNC(timer); - WriterCloseMsg Msg = (WriterCloseMsg)Msg_v; - SstStream Stream = (SstStream)Msg->RS_Stream; - - STREAM_MUTEX_LOCK(Stream); - CP_verbose(Stream, PerStepVerbose, - "Received a writer close message. " - "Timestep %d was the final timestep.\n", - Msg->FinalTimestep); - - Stream->FinalTimestep = Msg->FinalTimestep; - Stream->Status = PeerClosed; - /* wake anyone that might be waiting */ - STREAM_CONDITION_SIGNAL(Stream); - STREAM_MUTEX_UNLOCK(Stream); - PERFSTUBS_TIMER_STOP_FUNC(timer); -} - -// CP_CommPatternLockedHandler is called by the network handler thread -// to handle CommPatternLocked messages. It can only be called -// post-registration and won't be called after Close. Lock to protect -// against race conditions in determining comm lock scenario. -extern void CP_CommPatternLockedHandler(CManager cm, CMConnection conn, - void *Msg_v, void *client_data, - attr_list attrs) -{ - CommPatternLockedMsg Msg = (CommPatternLockedMsg)Msg_v; - SstStream Stream = (SstStream)Msg->RS_Stream; - - STREAM_MUTEX_LOCK(Stream); - CP_verbose( - Stream, PerStepVerbose, - "Received a CommPatternLocked message, beginning with Timestep %d.\n", - Msg->Timestep); - - Stream->CommPatternLocked = 1; - Stream->CommPatternLockedTimestep = Msg->Timestep; - STREAM_MUTEX_UNLOCK(Stream); -} - -static long MaxQueuedMetadata(SstStream Stream) -{ - struct _TimestepMetadataList *Next; - long MaxTimestep = -1; - STREAM_ASSERT_LOCKED(Stream); - Next = Stream->Timesteps; - if (Next == NULL) - { - CP_verbose(Stream, TraceVerbose, "MaxQueued Timestep returning -1\n"); - return -1; - } - while (Next) - { - if (Next->MetadataMsg->Timestep >= MaxTimestep) - { - MaxTimestep = Next->MetadataMsg->Timestep; - } - Next = Next->Next; - } - CP_verbose(Stream, TraceVerbose, "MaxQueued Timestep returning %ld\n", - MaxTimestep); - return MaxTimestep; -} - -static long NextQueuedMetadata(SstStream Stream) -{ - struct _TimestepMetadataList *Next; - long MinTimestep = LONG_MAX; - STREAM_ASSERT_LOCKED(Stream); - Next = Stream->Timesteps; - if (Next == NULL) - { - CP_verbose(Stream, TraceVerbose, "NextQueued Timestep returning -1\n"); - return -1; - } - while (Next) - { - if (Next->MetadataMsg->Timestep <= MinTimestep) - { - MinTimestep = Next->MetadataMsg->Timestep; - } - Next = Next->Next; - } - CP_verbose(Stream, TraceVerbose, "NextQueued Timestep returning %ld\n", - MinTimestep); - return MinTimestep; -} - -// A delayed task to wake the stream after a specific time period -static void triggerDataCondition(CManager cm, void *vStream) -{ - SstStream Stream = (SstStream)vStream; - - STREAM_MUTEX_LOCK(Stream); - /* wake the sleeping main thread for timeout */ - STREAM_CONDITION_SIGNAL(Stream); - STREAM_MUTEX_UNLOCK(Stream); -} - -static void waitForMetadataWithTimeout(SstStream Stream, float timeout_secs) -{ - struct _TimestepMetadataList *Next; - struct timeval start, now, end; - int timeout_int_sec = floor(timeout_secs); - int timeout_int_usec = ((timeout_secs - floorf(timeout_secs)) * 1000000); - CMTaskHandle TimeoutTask = NULL; - - STREAM_ASSERT_LOCKED(Stream); - gettimeofday(&start, NULL); - Next = Stream->Timesteps; - CP_verbose( - Stream, PerRankVerbose, - "Wait for metadata with timeout %g secs starting at time %ld.%06ld \n", - timeout_secs, start.tv_sec, start.tv_usec); - if (Next) - { - CP_verbose(Stream, PerRankVerbose, - "Returning from wait with timeout, NO TIMEOUT\n"); - } - end.tv_sec = start.tv_sec + timeout_int_sec; - end.tv_usec = start.tv_usec + timeout_int_usec; - if (end.tv_usec > 1000000) - { - end.tv_sec++; - end.tv_usec -= 1000000; - } - if (end.tv_sec < start.tv_sec) - { - // rollover - end.tv_sec = INT_MAX; - } - // special case - if (timeout_secs == 0.0) - { - CP_verbose( - Stream, PerRankVerbose, - "Returning from wait With no data after zero timeout poll\n"); - return; - } - - TimeoutTask = - CMadd_delayed_task(Stream->CPInfo->SharedCM->cm, timeout_int_sec, - timeout_int_usec, triggerDataCondition, Stream); - while (1) - { - Next = Stream->Timesteps; - if (Next) - { - CMremove_task(TimeoutTask); - CP_verbose(Stream, PerRankVerbose, - "Returning from wait with timeout, NO TIMEOUT\n"); - return; - } - if (Stream->Status != Established) - { - CP_verbose(Stream, PerRankVerbose, - "Returning from wait with timeout, STREAM NO " - "LONGER ESTABLISHED\n"); - return; - } - gettimeofday(&now, NULL); - CP_verbose(Stream, TraceVerbose, - "timercmp, now is %ld.%06ld end is %ld.%06ld \n", - now.tv_sec, now.tv_usec, end.tv_sec, end.tv_usec); - if (timercmp(&now, &end, >)) - { - CP_verbose(Stream, PerRankVerbose, - "Returning from wait after timing out\n"); - return; - } - /* wait until we get the timestep metadata or something else changes */ - STREAM_CONDITION_WAIT(Stream); - } - /* NOTREACHED */ -} - -static void releasePriorTimesteps(SstStream Stream, long Latest) -{ - struct _TimestepMetadataList *Next, *Last; - STREAM_ASSERT_LOCKED(Stream); - CP_verbose(Stream, PerRankVerbose, - "Releasing any timestep earlier than %d\n", Latest); - Next = Stream->Timesteps; - Last = NULL; - while (Next) - { - if ((Next->MetadataMsg->Timestep < Latest) && - (Next->MetadataMsg->Timestep != Stream->CurrentWorkingTimestep)) - { - struct _TimestepMetadataList *This = Next; - struct _ReleaseTimestepMsg Msg; - Next = This->Next; - - /* - * before discarding, install any precious metadata from this - * message - */ - if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) - { - FFSMarshalInstallPreciousMetadata(Stream, This->MetadataMsg); - } - else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) - { - AddFormatsToMetaMetaInfo(Stream, This->MetadataMsg); - AddAttributesToAttrDataList(Stream, This->MetadataMsg); - } - - memset(&Msg, 0, sizeof(Msg)); - Msg.Timestep = This->MetadataMsg->Timestep; - - /* - * send each writer rank a release for this timestep (actually goes - * to WSR - * Streams) - */ - CP_verbose(Stream, PerRankVerbose, - "Sending ReleaseTimestep message for RELEASE " - "PRIOR timestep %d, one to each writer\n", - This->MetadataMsg->Timestep); - - if (Last == NULL) - { - Stream->Timesteps = Next; - } - else - { - Last->Next = Next; - } - STREAM_MUTEX_UNLOCK(Stream); - sendOneToEachWriterRank( - Stream, Stream->CPInfo->SharedCM->ReleaseTimestepFormat, &Msg, - &Msg.WSR_Stream); - if (This->MetadataMsg == NULL) - printf("READER RETURN_BUFFER, metadatamsg == %p, line %d\n", - This->MetadataMsg, __LINE__); - CMreturn_buffer(Stream->CPInfo->SharedCM->cm, This->MetadataMsg); - STREAM_MUTEX_LOCK(Stream); - free(This); - } - else - { - Last = Next; - Next = Next->Next; - } - } -} - -static void FreeTimestep(SstStream Stream, long Timestep) -{ - /* - * remove local metadata for that timestep - */ - struct _TimestepMetadataList *List = Stream->Timesteps; - - STREAM_ASSERT_LOCKED(Stream); - if (Stream->Timesteps->MetadataMsg->Timestep == Timestep) - { - Stream->Timesteps = List->Next; - if (List->MetadataMsg == NULL) - printf("READER RETURN_BUFFER, List->MEtadataMsg == %p, line %d\n", - List->MetadataMsg, __LINE__); - CMreturn_buffer(Stream->CPInfo->SharedCM->cm, List->MetadataMsg); - - free(List); - } - else - { - struct _TimestepMetadataList *last = List; - List = List->Next; - while (List != NULL) - { - if (List->MetadataMsg->Timestep == Timestep) - { - last->Next = List->Next; - if (List->MetadataMsg == NULL) - printf("READER RETURN_BUFFER, List->MEtadataMsg == %p, " - "line %d\n", - List->MetadataMsg, __LINE__); - CMreturn_buffer(Stream->CPInfo->SharedCM->cm, - List->MetadataMsg); - - free(List); - break; - } - last = List; - List = List->Next; - } - } -} - -static TSMetadataList waitForNextMetadata(SstStream Stream, long LastTimestep) -{ - TSMetadataList FoundTS = NULL; - CP_verbose(Stream, PerRankVerbose, - "Wait for next metadata after last timestep %d\n", LastTimestep); - while (1) - { - struct _TimestepMetadataList *Next; - Next = Stream->Timesteps; - while (Next) - { - CP_verbose(Stream, TraceVerbose, - "Examining metadata for Timestep %d\n", - Next->MetadataMsg->Timestep); - if (((Next->MetadataMsg->Metadata == NULL) || - (Next->MetadataMsg->Timestep < - Stream->DiscardPriorTimestep)) && - (FoundTS == NULL)) - { - /* - * Either this is a dummy timestep for something that - * was discarded on the writer side, or it is a - * timestep that satisfies DiscardPriorTimestep and - * we've already sent a release for it. Now is the - * time to install the 'precious' info that it carried - * (Attributes and formats) and then discard it. - */ - CP_verbose(Stream, PerRankVerbose, - "SstAdvanceStep installing precious " - "metadata for discarded TS %d\n", - Next->MetadataMsg->Timestep); - if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) - { - FFSMarshalInstallPreciousMetadata(Stream, - Next->MetadataMsg); - } - else if (Stream->WriterConfigParams->MarshalMethod == - SstMarshalBP5) - { - AddFormatsToMetaMetaInfo(Stream, Next->MetadataMsg); - AddAttributesToAttrDataList(Stream, Next->MetadataMsg); - } - TSMetadataList Tmp = Next; - Next = Next->Next; - FreeTimestep(Stream, Tmp->MetadataMsg->Timestep); - continue; - } - if (Next->MetadataMsg->Timestep >= LastTimestep) - { - if ((FoundTS == NULL) && - (Next->MetadataMsg->Timestep > LastTimestep)) - { - FoundTS = Next; - break; - } - else if ((FoundTS != NULL) && (FoundTS->MetadataMsg->Timestep > - Next->MetadataMsg->Timestep)) - { - FoundTS = Next; - break; - } - } - Next = Next->Next; - } - if (FoundTS) - { - CP_verbose(Stream, PerRankVerbose, - "Returning metadata for Timestep %d\n", - FoundTS->MetadataMsg->Timestep); - Stream->CurrentWorkingTimestep = FoundTS->MetadataMsg->Timestep; - return FoundTS; - } - /* didn't find a good next timestep, check Stream status */ - if ((Stream->Status != Established) || - ((Stream->FinalTimestep != INT_MAX) && - (Stream->FinalTimestep >= LastTimestep))) - { - CP_verbose(Stream, TraceVerbose, - "Stream Final Timestep is %d, last timestep was %d\n", - Stream->FinalTimestep, LastTimestep); - if (Stream->Status == NotOpen) - { - CP_verbose(Stream, PerRankVerbose, - "Wait for next metadata returning NULL because " - "channel was never fully established\n"); - } - else if (Stream->Status == PeerFailed) - { - CP_verbose(Stream, PerRankVerbose, - "Wait for next metadata returning NULL because " - "the connection failed before final timestep " - "notification\n"); - } - else - { - CP_verbose(Stream, PerStepVerbose, - "Wait for next metadata returning NULL, status %d ", - Stream->Status); - } - /* closed or failed, return NULL */ - Stream->CurrentWorkingTimestep = -1; - return NULL; - } - CP_verbose(Stream, PerRankVerbose, - "Waiting for metadata for a Timestep later than TS %d\n", - LastTimestep); - CP_verbose(Stream, TraceVerbose, - "(PID %lx, TID %lx) Stream status is %s\n", (long)getpid(), - (long)gettid(), SSTStreamStatusStr[Stream->Status]); - /* wait until we get the timestep metadata or something else changes */ - STREAM_CONDITION_WAIT(Stream); - } - /* NOTREACHED */ -} - -// SstGetCurMetadata is an SST entry point only called by the main -// program thread. Only accesses the CurrentMetadata field which is -// touched only by other subroutines called by the main program -// thread, it needs no locking. -extern SstFullMetadata SstGetCurMetadata(SstStream Stream) -{ - return Stream->CurrentMetadata; -} - -extern SstMetaMetaList SstGetNewMetaMetaData(SstStream Stream, long Timestep) -{ - int RetCount = 0; - STREAM_MUTEX_LOCK(Stream); - int64_t LastRetTimestep = -1; - int i; - for (i = 0; i < Stream->InternalMetaMetaCount; i++) - { - if ((LastRetTimestep == -1) || - (Stream->InternalMetaMetaInfo[i].TimestepAdded >= LastRetTimestep)) - RetCount++; - } - if (RetCount == 0) - { - STREAM_MUTEX_UNLOCK(Stream); - return NULL; - } - SstMetaMetaList ret = malloc(sizeof(ret[0]) * (RetCount + 1)); - int j = 0; - for (i = 0; i < Stream->InternalMetaMetaCount; i++) - { - if ((LastRetTimestep == -1) || - (Stream->InternalMetaMetaInfo[i].TimestepAdded >= LastRetTimestep)) - { - // no copies, keep memory ownership in SST - ret[j].BlockData = Stream->InternalMetaMetaInfo[i].BlockData; - ret[j].BlockSize = Stream->InternalMetaMetaInfo[i].BlockSize; - ret[j].ID = Stream->InternalMetaMetaInfo[i].ID; - ret[j].IDSize = Stream->InternalMetaMetaInfo[i].IDSize; - j++; - } - } - memset(&ret[j], 0, sizeof(ret[j])); - LastRetTimestep = Timestep; - STREAM_MUTEX_UNLOCK(Stream); - return ret; -} - -extern SstBlock SstGetAttributeData(SstStream Stream, long Timestep) -{ - STREAM_MUTEX_LOCK(Stream); - struct _SstBlock *InternalAttrDataInfo = Stream->InternalAttrDataInfo; - Stream->AttrsRetrieved = 1; - STREAM_MUTEX_UNLOCK(Stream); - return InternalAttrDataInfo; -} - -static void AddToReadStats(SstStream Stream, int Rank, long Timestep, - size_t Length) -{ - if (!Stream->RanksRead) - Stream->RanksRead = calloc(1, Stream->WriterCohortSize); - Stream->RanksRead[Rank] = 1; - Stream->Stats.BytesRead += Length; -} - -#ifndef min -#define min(a, b) (((a) < (b)) ? (a) : (b)) -#endif - -static void ReleaseTSReadStats(SstStream Stream, long Timestep) -{ - int ThisFanIn = 0; - if (Stream->RanksRead) - { - for (int i = 0; i < Stream->WriterCohortSize; i++) - { - if (Stream->RanksRead[i]) - ThisFanIn++; - } - memset(Stream->RanksRead, 0, Stream->WriterCohortSize); - } - if (Stream->Stats.TimestepsConsumed == 1) - { - Stream->Stats.RunningFanIn = ThisFanIn; - } - else - { - Stream->Stats.RunningFanIn = - Stream->Stats.RunningFanIn + - ((double)ThisFanIn - Stream->Stats.RunningFanIn) / - min(Stream->Stats.TimestepsConsumed, 100); - } -} - -// SstReadRemotememory is only called by the main -// program thread. -extern void *SstReadRemoteMemory(SstStream Stream, int Rank, long Timestep, - size_t Offset, size_t Length, void *Buffer, - void *DP_TimestepInfo) -{ - if (Stream->ConfigParams->ReaderShortCircuitReads) - return NULL; - Stream->Stats.BytesTransferred += Length; - AddToReadStats(Stream, Rank, Timestep, Length); - return Stream->DP_Interface->readRemoteMemory( - &Svcs, Stream->DP_Stream, Rank, Timestep, Offset, Length, Buffer, - DP_TimestepInfo); -} - -static void sendOneToEachWriterRank(SstStream Stream, CMFormat f, void *Msg, - void **WS_StreamPtr) -{ - if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) - { - int i = 0; - while (Stream->Peers[i] != -1) - { - int peer = Stream->Peers[i]; - CMConnection conn = Stream->ConnectionsToWriter[peer].CMconn; - /* add the writer Stream identifier to each outgoing - * message */ - *WS_StreamPtr = Stream->ConnectionsToWriter[peer].RemoteStreamID; - if (CMwrite(conn, f, Msg) != 1) - { - switch (Stream->Status) - { - case NotOpen: - case Opening: - case Established: - CP_verbose(Stream, CriticalVerbose, - "Message failed to send to writer %d (%p)\n", - peer, *WS_StreamPtr); - break; - case PeerClosed: - case PeerFailed: - case Closed: - case Destroyed: - // Don't warn on send failures for closing/closed clients - break; - } - } - i++; - } - } - else - { - if (Stream->Rank == 0) - { - int peer = 0; - CMConnection conn = Stream->ConnectionsToWriter[peer].CMconn; - /* add the writer Stream identifier to each outgoing - * message */ - *WS_StreamPtr = Stream->ConnectionsToWriter[peer].RemoteStreamID; - if (CMwrite(conn, f, Msg) != 1) - { - switch (Stream->Status) - { - case NotOpen: - case Opening: - case Established: - CP_verbose(Stream, CriticalVerbose, - "Message failed to send to writer %d (%p)\n", - peer, *WS_StreamPtr); - break; - case PeerClosed: - case PeerFailed: - case Closed: - case Destroyed: - // Don't warn on send failures for closing/closed clients - break; - } - } - } - } -} - -// SstReaderDefinitionLock is only called by the main -// program thread. -extern void SstReaderDefinitionLock(SstStream Stream, long EffectiveTimestep) -{ - struct _LockReaderDefinitionsMsg Msg; - - memset(&Msg, 0, sizeof(Msg)); - Msg.Timestep = EffectiveTimestep; - - sendOneToEachWriterRank( - Stream, Stream->CPInfo->SharedCM->LockReaderDefinitionsFormat, &Msg, - &Msg.WSR_Stream); -} - -// SstReleaseStep is only called by the main program thread. It -// locks to protect the timestep list before freeing the local -// representation of the resleased timestep. -extern void SstReleaseStep(SstStream Stream) -{ - long Timestep = Stream->ReaderTimestep; - struct _ReleaseTimestepMsg Msg; - - PERFSTUBS_TIMER_START_FUNC(timer); - STREAM_MUTEX_LOCK(Stream); - if (Stream->DP_Interface->RSReleaseTimestep) - { - (Stream->DP_Interface->RSReleaseTimestep)(&Svcs, Stream->DP_Stream, - Timestep); - } - ReleaseTSReadStats(Stream, Timestep); - STREAM_MUTEX_UNLOCK(Stream); - - if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) || - (Stream->Rank == 0)) - { - STREAM_MUTEX_LOCK(Stream); - FreeTimestep(Stream, Timestep); - STREAM_MUTEX_UNLOCK(Stream); - } - - SMPI_Barrier(Stream->mpiComm); - - memset(&Msg, 0, sizeof(Msg)); - Msg.Timestep = Timestep; - - /* - * send each writer rank a release for this timestep (actually goes to WSR - * Streams) - */ - CP_verbose( - Stream, PerRankVerbose, - "Sending ReleaseTimestep message for timestep %d, one to each writer\n", - Timestep); - sendOneToEachWriterRank(Stream, - Stream->CPInfo->SharedCM->ReleaseTimestepFormat, - &Msg, &Msg.WSR_Stream); - - if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) - { - FFSClearTimestepData(Stream); - } - PERFSTUBS_TIMER_STOP_FUNC(timer); -} - -static void NotifyDPArrivedMetadata(SstStream Stream, - struct _TimestepMetadataMsg *MetadataMsg) -{ - if ((MetadataMsg->Metadata != NULL) && - (MetadataMsg->Timestep > Stream->LastDPNotifiedTimestep)) - { - if (Stream->DP_Interface->timestepArrived) - { - Stream->DP_Interface->timestepArrived(&Svcs, Stream->DP_Stream, - MetadataMsg->Timestep, - MetadataMsg->PreloadMode); - } - Stream->LastDPNotifiedTimestep = MetadataMsg->Timestep; - } -} - -/* - * wait for metadata for Timestep indicated to arrive, or fail with EndOfStream - * or Error - */ -static SstStatusValue SstAdvanceStepPeer(SstStream Stream, SstStepMode mode, - const float timeout_sec) -{ - - TSMetadataList Entry; - - PERFSTUBS_TIMER_START(timer, "Waiting on metadata per rank per timestep"); - - if ((timeout_sec >= 0.0) || (mode == SstLatestAvailable)) - { - struct _GlobalOpInfo - { - float timeout_sec; - int mode; - long LatestTimestep; - }; - struct _GlobalOpInfo my_info; - struct _GlobalOpInfo *global_info = NULL; - long NextTimestep; - - if (Stream->Rank == 0) - { - global_info = malloc(sizeof(my_info) * Stream->CohortSize); - CP_verbose(Stream, PerRankVerbose, - "In special case of advancestep, mode is %d, " - "Timeout Sec is %g, flt_max is %g\n", - mode, timeout_sec, FLT_MAX); - } - my_info.LatestTimestep = MaxQueuedMetadata(Stream); - my_info.timeout_sec = timeout_sec; - my_info.mode = mode; - SMPI_Gather(&my_info, sizeof(my_info), SMPI_CHAR, global_info, - sizeof(my_info), SMPI_CHAR, 0, Stream->mpiComm); - if (Stream->Rank == 0) - { - long Biggest = -1; - long Smallest = LONG_MAX; - for (int i = 0; i < Stream->CohortSize; i++) - { - if (global_info[i].LatestTimestep > Biggest) - { - Biggest = global_info[i].LatestTimestep; - } - if (global_info[i].LatestTimestep < Smallest) - { - Smallest = global_info[i].LatestTimestep; - } - } - - free(global_info); - - /* - * Several situations are possible here, depending upon - * whether or not a timeout is specified and/or - * LatestAvailable is specified, and whether or not we - * have timesteps queued anywhere. If they want - * LatestAvailable and we have any Timesteps queued - * anywhere, we decide upon a timestep to return and - * assume that all ranks will get it soon (or else we're - * in failure mode). If there are no timesteps queued - * anywhere, then we're going to wait for timeout seconds - * ON RANK 0. RANK 0 AND ONLY RANK 0 WILL DECIDE IF WE - * TIMEOUT OR RETURN WITH DATA. It is possible that other - * ranks get timestep metadata before the timeout expires, - * but we don't care. Whatever would happen on rank 0 is - * what happens everywhere. - */ - - if (Biggest == -1) - { - // AllQueuesEmpty - if (timeout_sec >= 0.0) - { - waitForMetadataWithTimeout(Stream, timeout_sec); - } - else - { - waitForMetadataWithTimeout(Stream, FLT_MAX); - } - NextTimestep = - MaxQueuedMetadata(Stream); /* might be -1 if we timed out */ - } - else - { - /* - * we've actually got a choice here. "Smallest" is - * the LatestTimestep that everyone has. "Biggest" is - * the Latest that someone has seen, and presumably - * others will see shortly. I'm going to go with Biggest - * until I have a reason to prefer one or the other. - */ - if (mode == SstLatestAvailable) - { - // latest available - CP_verbose(Stream, PerRankVerbose, - "Returning Biggest timestep available " - "%ld because LatestAvailable " - "specified\n", - Biggest); - NextTimestep = Biggest; - } - else - { - // next available (take the oldest that everyone has) - CP_verbose(Stream, PerRankVerbose, - "Returning Smallest timestep available " - "%ld because NextAvailable specified\n", - Smallest); - NextTimestep = Smallest; - } - } - if ((NextTimestep == -1) && (Stream->Status == PeerClosed)) - { - /* force everyone to close */ - NextTimestep = -2; - } - if ((NextTimestep == -1) && (Stream->Status == PeerFailed)) - { - /* force everyone to return failed */ - NextTimestep = -3; - } - SMPI_Bcast(&NextTimestep, 1, SMPI_LONG, 0, Stream->mpiComm); - } - else - { - STREAM_MUTEX_UNLOCK(Stream); - SMPI_Bcast(&NextTimestep, 1, SMPI_LONG, 0, Stream->mpiComm); - STREAM_MUTEX_LOCK(Stream); - } - if (NextTimestep == -2) - { - /* there was a peerClosed setting on rank0, we'll close */ - Stream->Status = PeerClosed; - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning EndOfStream at timestep %d\n", - Stream->ReaderTimestep); - return SstEndOfStream; - } - if (NextTimestep == -3) - { - /* there was a peerFailed setting on rank0, we'll fail */ - Stream->Status = PeerFailed; - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning EndOfStream at timestep %d\n", - Stream->ReaderTimestep); - STREAM_MUTEX_UNLOCK(Stream); - Stream->DP_Interface->notifyConnFailure(&Svcs, Stream->DP_Stream, - 0); - STREAM_MUTEX_LOCK(Stream); - return SstFatalError; - } - if (NextTimestep == -1) - { - CP_verbose(Stream, PerStepVerbose, - "AdvancestepPeer timing out on no data\n"); - return SstTimeout; - } - if (mode == SstLatestAvailable) - { - // latest available - /* release all timesteps from before NextTimestep, then fall - * through below */ - /* Side note: It is possible that someone could get a "prior" - * timestep after this point. It has to be released upon - * arrival */ - CP_verbose(Stream, PerStepVerbose, - "timed or Latest timestep, determined NextTimestep %d\n", - NextTimestep); - Stream->DiscardPriorTimestep = NextTimestep; - releasePriorTimesteps(Stream, NextTimestep); - } - } - - Entry = waitForNextMetadata(Stream, Stream->ReaderTimestep); - - PERFSTUBS_TIMER_STOP(timer); - - if (Entry) - { - NotifyDPArrivedMetadata(Stream, Entry->MetadataMsg); - - if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) - { - PERFSTUBS_TIMER_START(timerFFS, "FFS marshaling case"); - FFSMarshalInstallMetadata(Stream, Entry->MetadataMsg); - PERFSTUBS_TIMER_STOP(timerFFS); - } - else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) - { - AddFormatsToMetaMetaInfo(Stream, Entry->MetadataMsg); - AddAttributesToAttrDataList(Stream, Entry->MetadataMsg); - } - Stream->ReaderTimestep = Entry->MetadataMsg->Timestep; - SstFullMetadata Mdata = malloc(sizeof(struct _SstFullMetadata)); - memset(Mdata, 0, sizeof(struct _SstFullMetadata)); - Mdata->WriterCohortSize = Entry->MetadataMsg->CohortSize; - Mdata->WriterMetadata = - malloc(sizeof(Mdata->WriterMetadata[0]) * Mdata->WriterCohortSize); - for (int i = 0; i < Mdata->WriterCohortSize; i++) - { - Mdata->WriterMetadata[i] = &Entry->MetadataMsg->Metadata[i]; - } - if (Stream->DP_Interface->TimestepInfoFormats == NULL) - { - // DP didn't provide struct info, no valid data - Mdata->DP_TimestepInfo = NULL; - } - else - { - Mdata->DP_TimestepInfo = Entry->MetadataMsg->DP_TimestepInfo; - } - Stream->CurrentWorkingTimestep = Entry->MetadataMsg->Timestep; - Stream->CurrentMetadata = Mdata; - - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning Success on timestep %d\n", - Entry->MetadataMsg->Timestep); - return SstSuccess; - } - if (Stream->Status == PeerClosed) - { - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStepPeer returning EndOfStream at timestep %d\n", - Stream->ReaderTimestep); - return SstEndOfStream; - } - else - { - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning FatalError at timestep %d\n", - Stream->ReaderTimestep); - return SstFatalError; - } -} - -static SstStatusValue SstAdvanceStepMin(SstStream Stream, SstStepMode mode, - const float timeout_sec) -{ - TSMetadataDistributionMsg ReturnData; - struct _TimestepMetadataMsg *MetadataMsg; - SstStatusValue ret; - - void *free_block; - - if (Stream->Rank == 0) - { - struct _TimestepMetadataDistributionMsg msg; - SstStatusValue return_value = SstSuccess; - TSMetadataList RootEntry = NULL; - - memset(&msg, 0, sizeof(msg)); - msg.TSmsg = NULL; - msg.CommPatternLockedTimestep = -1; - if (Stream->CommPatternLocked == 1) - { - msg.CommPatternLockedTimestep = Stream->CommPatternLockedTimestep; - } - if ((timeout_sec >= 0.0) || (mode == SstLatestAvailable)) - { - long NextTimestep = -1; - long LatestTimestep = MaxQueuedMetadata(Stream); - /* - * Several situations are possible here, depending upon - * whether or not a timeout is specified and/or - * LatestAvailable is specified, and whether or not we - * have timesteps queued anywhere. If they want - * LatestAvailable and we have any Timesteps queued - * anywhere, we decide upon a timestep to return and - * assume that all ranks will get it soon (or else we're - * in failure mode). If there are no timesteps queued - * anywhere, then we're going to wait for timeout seconds - * ON RANK 0. RANK 0 AND ONLY RANK 0 WILL DECIDE IF WE - * TIMEOUT OR RETURN WITH DATA. It is possible that other - * ranks get timestep metadata before the timeout expires, - * but we don't care. Whatever would happen on rank 0 is - * what happens everywhere. - */ - - if (LatestTimestep == -1) - { - // AllQueuesEmpty - if (timeout_sec >= 0.0) - { - waitForMetadataWithTimeout(Stream, timeout_sec); - } - else - { - waitForMetadataWithTimeout(Stream, FLT_MAX); - } - NextTimestep = - MaxQueuedMetadata(Stream); /* might be -1 if we timed out */ - } - else - { - if (mode == SstLatestAvailable) - { - // latest available - CP_verbose(Stream, PerStepVerbose, - "Returning latest timestep available " - "%ld because LatestAvailable " - "specified\n", - LatestTimestep); - NextTimestep = LatestTimestep; - } - else - { - // next available (take the oldest that everyone has) - NextTimestep = NextQueuedMetadata(Stream); - CP_verbose(Stream, PerStepVerbose, - "Returning Smallest timestep available " - "%ld because NextAvailable specified\n", - NextTimestep); - } - } - if (Stream->Status == PeerFailed) - { - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStepMin returning FatalError because of " - "connection failure at timestep %d\n", - Stream->ReaderTimestep); - return_value = SstFatalError; - } - else if ((NextTimestep == -1) && (Stream->Status == PeerClosed)) - { - CP_verbose( - Stream, PerStepVerbose, - "SstAdvanceStepMin returning EndOfStream at timestep %d\n", - Stream->ReaderTimestep); - return_value = SstEndOfStream; - } - else if (NextTimestep == -1) - { - CP_verbose(Stream, PerStepVerbose, - "AdvancestepMin timing out on no data\n"); - return_value = SstTimeout; - } - else if (mode == SstLatestAvailable) - { - // latest available - /* release all timesteps from before NextTimestep, then fall - * through below */ - /* Side note: It is possible that someone could get a "prior" - * timestep after this point. It has to be released upon - * arrival */ - CP_verbose( - Stream, PerStepVerbose, - "timed or Latest timestep, determined NextTimestep %d\n", - NextTimestep); - Stream->DiscardPriorTimestep = NextTimestep; - releasePriorTimesteps(Stream, NextTimestep); - } - } - if (Stream->Status == PeerFailed) - { - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStepMin returning FatalError because of " - "conn failure at timestep %d\n", - Stream->ReaderTimestep); - return_value = SstFatalError; - } - if (return_value == SstSuccess) - { - RootEntry = waitForNextMetadata(Stream, Stream->ReaderTimestep); - } - if (RootEntry) - { - msg.TSmsg = RootEntry->MetadataMsg; - msg.ReturnValue = return_value; - CP_verbose(Stream, TraceVerbose, - "Setting TSmsg to Rootentry value\n"); - } - else - { - if (return_value == SstSuccess) - { - if (Stream->Status == PeerClosed) - { - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStepMin rank 0 returning " - "EndOfStream at timestep %d\n", - Stream->ReaderTimestep); - msg.ReturnValue = SstEndOfStream; - } - else - { - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStepMin rank 0 returning " - "FatalError at timestep %d\n", - Stream->ReaderTimestep); - msg.ReturnValue = SstFatalError; - } - CP_verbose(Stream, TraceVerbose, "Setting TSmsg to NULL\n"); - msg.TSmsg = NULL; - } - else - { - msg.ReturnValue = return_value; - } - } - // AddArrivedMetadataInfo(Stream, &msg); - ReturnData = CP_distributeDataFromRankZero( - Stream, &msg, Stream->CPInfo->TimestepDistributionFormat, - &free_block); - } - else - { - - STREAM_MUTEX_UNLOCK(Stream); - ReturnData = CP_distributeDataFromRankZero( - Stream, NULL, Stream->CPInfo->CombinedWriterInfoFormat, - &free_block); - STREAM_MUTEX_LOCK(Stream); - } - ret = (SstStatusValue)ReturnData->ReturnValue; - - if (ReturnData->ReturnValue != SstSuccess) - { - if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) && - (ReturnData->TSmsg)) - { - CP_verbose( - Stream, PerRankVerbose, - "SstAdvanceStep installing precious metadata before exiting\n"); - FFSMarshalInstallPreciousMetadata(Stream, ReturnData->TSmsg); - } - else if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) && - (ReturnData->TSmsg)) - { - AddFormatsToMetaMetaInfo(Stream, ReturnData->TSmsg); - AddAttributesToAttrDataList(Stream, ReturnData->TSmsg); - } - - free(free_block); - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning FAILURE\n"); - return ret; - } - MetadataMsg = ReturnData->TSmsg; - - if (ReturnData->CommPatternLockedTimestep != -1) - { - Stream->CommPatternLockedTimestep = - ReturnData->CommPatternLockedTimestep; - Stream->CommPatternLocked = 2; - STREAM_MUTEX_UNLOCK(Stream); - if (Stream->DP_Interface->RSreadPatternLocked) - { - Stream->DP_Interface->RSreadPatternLocked( - &Svcs, Stream->DP_Stream, Stream->CommPatternLockedTimestep); - } - STREAM_MUTEX_LOCK(Stream); - } - if (MetadataMsg) - { - NotifyDPArrivedMetadata(Stream, MetadataMsg); - - Stream->ReaderTimestep = MetadataMsg->Timestep; - if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) - { - CP_verbose(Stream, TraceVerbose, - "Calling install metadata from metadata block %p\n", - MetadataMsg); - FFSMarshalInstallMetadata(Stream, MetadataMsg); - } - else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) - { - AddFormatsToMetaMetaInfo(Stream, MetadataMsg); - AddAttributesToAttrDataList(Stream, MetadataMsg); - } - SstFullMetadata Mdata = malloc(sizeof(struct _SstFullMetadata)); - memset(Mdata, 0, sizeof(struct _SstFullMetadata)); - Mdata->WriterCohortSize = MetadataMsg->CohortSize; - Mdata->WriterMetadata = - malloc(sizeof(Mdata->WriterMetadata[0]) * Mdata->WriterCohortSize); - for (int i = 0; i < Mdata->WriterCohortSize; i++) - { - Mdata->WriterMetadata[i] = &MetadataMsg->Metadata[i]; - } - if (Stream->DP_Interface->TimestepInfoFormats == NULL) - { - // DP didn't provide struct info, no valid data - Mdata->DP_TimestepInfo = NULL; - } - else - { - Mdata->DP_TimestepInfo = MetadataMsg->DP_TimestepInfo; - } - Stream->CurrentWorkingTimestep = MetadataMsg->Timestep; - Mdata->FreeBlock = free_block; - Stream->CurrentMetadata = Mdata; - - CP_verbose(Stream, PerStepVerbose, - "SstAdvanceStep returning Success on timestep %d\n", - MetadataMsg->Timestep); - return SstSuccess; - } - CP_verbose(Stream, TraceVerbose, "SstAdvanceStep final return\n"); - return ret; -} - -// SstAdvanceStep is only called by the main program thread. -extern SstStatusValue SstAdvanceStep(SstStream Stream, const float timeout_sec) -{ - - SstStatusValue result; - STREAM_MUTEX_LOCK(Stream); - if (Stream->CurrentMetadata != NULL) - { - if (Stream->CurrentMetadata->FreeBlock) - { - free(Stream->CurrentMetadata->FreeBlock); - } - if (Stream->CurrentMetadata->WriterMetadata) - { - free(Stream->CurrentMetadata->WriterMetadata); - } - free(Stream->CurrentMetadata); - Stream->CurrentMetadata = NULL; - } - - if (Stream->WriterConfigParams->StepDistributionMode == StepsOnDemand) - { - struct _ReaderRequestStepMsg Msg; - CP_verbose(Stream, PerRankVerbose, - "Sending Reader Request Step messages to writer\n"); - memset(&Msg, 0, sizeof(Msg)); - sendOneToEachWriterRank( - Stream, Stream->CPInfo->SharedCM->ReaderRequestStepFormat, &Msg, - &Msg.WSR_Stream); - } - - SstStepMode mode = SstNextAvailable; - if (Stream->ConfigParams->AlwaysProvideLatestTimestep) - { - mode = SstLatestAvailable; - } - if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) - { - result = SstAdvanceStepPeer(Stream, mode, timeout_sec); - } - else - { - result = SstAdvanceStepMin(Stream, mode, timeout_sec); - } - if (result == SstSuccess) - { - Stream->Stats.TimestepsConsumed++; - } - STREAM_MUTEX_UNLOCK(Stream); - return result; -} - -// SstReaderClose is only called by the main program thread and -// needs no locking as it only accesses data set by the main thread -extern void SstReaderClose(SstStream Stream) -{ - /* need to have a reader-side shutdown protocol, but for now, just sleep for - * a little while to makes sure our release message for the last timestep - * got received */ - struct timeval CloseTime, Diff; - struct _ReaderCloseMsg Msg; - /* wait until each reader rank has done SstReaderClose() */ - SMPI_Barrier(Stream->mpiComm); - gettimeofday(&CloseTime, NULL); - timersub(&CloseTime, &Stream->ValidStartTime, &Diff); - memset(&Msg, 0, sizeof(Msg)); - sendOneToEachWriterRank(Stream, Stream->CPInfo->SharedCM->ReaderCloseFormat, - &Msg, &Msg.WSR_Stream); - Stream->Stats.StreamValidTimeSecs = - (double)Diff.tv_usec / 1e6 + Diff.tv_sec; - - if (Stream->CPVerbosityLevel >= (int)SummaryVerbose) - { - DoStreamSummary(Stream); - } - CMusleep(Stream->CPInfo->SharedCM->cm, 100000); - if (Stream->CurrentMetadata != NULL) - { - if (Stream->CurrentMetadata->FreeBlock) - free(Stream->CurrentMetadata->FreeBlock); - if (Stream->CurrentMetadata->WriterMetadata) - free(Stream->CurrentMetadata->WriterMetadata); - free(Stream->CurrentMetadata); - Stream->CurrentMetadata = NULL; - } - STREAM_MUTEX_LOCK(Stream); - for (int i = 0; i < Stream->InternalMetaMetaCount; i++) - { - free(Stream->InternalMetaMetaInfo[i].ID); - free(Stream->InternalMetaMetaInfo[i].BlockData); - } - free(Stream->InternalMetaMetaInfo); - if (Stream->InternalAttrDataInfo) - { - for (int i = 0; i < Stream->InternalAttrDataCount; i++) - { - free(Stream->InternalAttrDataInfo[i].BlockData); - } - free(Stream->InternalAttrDataInfo); - } - STREAM_MUTEX_UNLOCK(Stream); -} - -// SstWaitForCompletion is only called by the main program thread and -// needs no locking -extern SstStatusValue SstWaitForCompletion(SstStream Stream, void *handle) -{ - if (Stream->ConfigParams->ReaderShortCircuitReads) - return SstSuccess; - if (Stream->DP_Interface->waitForCompletion(&Svcs, handle) != 1) - { - return SstFatalError; - } - else - { - return SstSuccess; - } -} +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include +#include + +#include "adios2/common/ADIOSConfig.h" +#include +#include +#include + +#include "sst.h" + +#include "cp_internal.h" +#include + +#define gettid() pthread_self() +#ifdef MUTEX_DEBUG +#define STREAM_MUTEX_LOCK(Stream) \ + { \ + fprintf(stderr, "(PID %lx, TID %lx) CP_READER Trying lock line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + pthread_mutex_lock(&Stream->DataLock); \ + Stream->Locked++; \ + fprintf(stderr, "(PID %lx, TID %lx) CP_READER Got lock\n", \ + (long)getpid(), (long)gettid()); \ + } + +#define STREAM_MUTEX_UNLOCK(Stream) \ + { \ + fprintf(stderr, "(PID %lx, TID %lx) CP_READER UNlocking line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + Stream->Locked--; \ + pthread_mutex_unlock(&Stream->DataLock); \ + } +#define STREAM_CONDITION_WAIT(Stream) \ + { \ + fprintf( \ + stderr, \ + "(PID %lx, TID %lx) CP_READER Dropping Condition Lock line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + Stream->Locked = 0; \ + pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ + fprintf( \ + stderr, \ + "(PID %lx, TID %lx) CP_READER Acquired Condition Lock line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + Stream->Locked = 1; \ + } +#define STREAM_CONDITION_SIGNAL(Stream) \ + { \ + assert(Stream->Locked == 1); \ + fprintf(stderr, \ + "(PID %lx, TID %lx) CP_READER Signalling Condition line %d\n", \ + (long)getpid(), (long)gettid(), __LINE__); \ + pthread_cond_signal(&Stream->DataCondition); \ + } + +#define STREAM_ASSERT_LOCKED(Stream) \ + { \ + assert(Stream->Locked == 1); \ + } +#else +#define STREAM_MUTEX_LOCK(Stream) \ + { \ + pthread_mutex_lock(&Stream->DataLock); \ + } +#define STREAM_MUTEX_UNLOCK(Stream) \ + { \ + pthread_mutex_unlock(&Stream->DataLock); \ + } +#define STREAM_CONDITION_WAIT(Stream) \ + { \ + pthread_cond_wait(&Stream->DataCondition, &Stream->DataLock); \ + } +#define STREAM_CONDITION_SIGNAL(Stream) \ + { \ + pthread_cond_signal(&Stream->DataCondition); \ + } +#define STREAM_ASSERT_LOCKED(Stream) +#endif + +static char *readContactInfoFile(const char *Name, SstStream Stream, + int Timeout) +{ + size_t len = strlen(Name) + strlen(SST_POSTFIX) + 1; + char *FileName = malloc(len); + int Badfile = 0; + int ZeroCount = 0; + FILE *WriterInfo; + int64_t TimeoutRemainingMsec = Timeout * 1000; + int64_t WaitWarningRemainingMsec = 5 * 1000; + long SleepInterval = 100000; + snprintf(FileName, len, "%s" SST_POSTFIX, Name); + CP_verbose(Stream, PerRankVerbose, + "Looking for writer contact in file %s, with timeout %d secs\n", + FileName, Timeout); +redo: + WriterInfo = fopen(FileName, "r"); + while (!WriterInfo) + { + // CMusleep(Stream->CPInfo->cm, SleepInterval); + usleep(SleepInterval); + TimeoutRemainingMsec -= (SleepInterval / 1000); + WaitWarningRemainingMsec -= (SleepInterval / 1000); + if (WaitWarningRemainingMsec == 0) + { + fprintf(stderr, + "ADIOS2 SST Engine waiting for contact information " + "file %s to be created\n", + Name); + } + if (TimeoutRemainingMsec <= 0) + { + free(FileName); + return NULL; + } + WriterInfo = fopen(FileName, "r"); + } + struct stat Buf; + fstat(fileno(WriterInfo), &Buf); + int Size = Buf.st_size; + if (Size == 0) + { + // Try again, it might look zero momentarily, but shouldn't stay that + // way. + ZeroCount++; + if (ZeroCount < 5) + { + // We'll give it several attempts (and some time) to go non-zero + usleep(SleepInterval); + goto redo; + } + } + + if (Size < strlen(SSTMAGICV0)) + { + Badfile++; + } + else + { + char Tmp[strlen(SSTMAGICV0)]; + if (fread(Tmp, strlen(SSTMAGICV0), 1, WriterInfo) != 1) + { + fprintf(stderr, + "Filesystem read failed in SST Open, failing operation\n"); + fclose(WriterInfo); + Badfile++; + } + Size -= strlen(SSTMAGICV0); + if (strncmp(Tmp, SSTMAGICV0, strlen(SSTMAGICV0)) != 0) + { + Badfile++; + } + } + if (Badfile) + { + fprintf(stderr, + "!!! File %s is not an ADIOS2 SST Engine Contact file\n", + FileName); + free(FileName); + fclose(WriterInfo); + return NULL; + } + free(FileName); + char *Buffer = calloc(1, Size + 1); + if (fread(Buffer, Size, 1, WriterInfo) != 1) + { + fprintf(stderr, + "Filesystem read failed in SST Open, failing operation\n"); + free(Buffer); + fclose(WriterInfo); + return NULL; + } + fclose(WriterInfo); + return Buffer; +} + +static char *readContactInfoScreen(const char *Name, SstStream Stream) +{ + char Input[10240]; + char *Skip = Input; + fprintf(stdout, + "Please enter the contact information associated with SST " + "input stream \"%s\":\n", + Name); + if (fgets(Input, sizeof(Input), stdin) == NULL) + { + fprintf(stdout, "Read from stdin failed, exiting\n"); + exit(1); + } + while (isspace(*Skip)) + Skip++; + return strdup(Skip); +} + +static char *readContactInfo(const char *Name, SstStream Stream, int Timeout) +{ + switch (Stream->RegistrationMethod) + { + case SstRegisterFile: + return readContactInfoFile(Name, Stream, Timeout); + case SstRegisterScreen: + return readContactInfoScreen(Name, Stream); + case SstRegisterCloud: + /* not yet */ + return NULL; + } + return NULL; +} + +// ReaderConnCloseHandler is called by the network handler thread in +// response to the failure of a network connection to the writer. +extern void ReaderConnCloseHandler(CManager cm, CMConnection ClosedConn, + void *client_data) +{ + PERFSTUBS_TIMER_START_FUNC(timer); + SstStream Stream = (SstStream)client_data; + int FailedPeerRank = -1; + STREAM_MUTEX_LOCK(Stream); + CP_verbose(Stream, PerRankVerbose, "Reader-side close handler invoked\n"); + if ((Stream->Status == Destroyed) || (!Stream->ConnectionsToWriter)) + { + STREAM_MUTEX_UNLOCK(Stream); + return; + } + for (int i = 0; i < Stream->WriterCohortSize; i++) + { + if (Stream->ConnectionsToWriter[i].CMconn == ClosedConn) + { + FailedPeerRank = i; + } + } + + if (Stream->Status == Established) + { + if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && + (Stream->Rank != 0)) + { + CP_verbose(Stream, PerRankVerbose, + "Reader-side Rank received a " + "connection-close event during normal " + "operations, but might be part of shutdown " + "Don't change stream status.\n"); + /* if this happens and *is* a failure, we'll get the status from + * rank 0 later */ + } + else + { + /* + * tag our reader instance as failed, IFF this came from someone we + * should have gotten a CLOSE from. I.E. a reverse peer + */ + CP_verbose(Stream, PerRankVerbose, + "Reader-side Rank received a " + "connection-close event during normal " + "operations, peer likely failed\n"); + if (FailedPeerRank == Stream->FailureContactRank) + { + Stream->Status = PeerFailed; + STREAM_CONDITION_SIGNAL(Stream); + } + } + CP_verbose( + Stream, PerRankVerbose, + "The close was for connection to writer peer %d, notifying DP\n", + FailedPeerRank); + STREAM_MUTEX_UNLOCK(Stream); + /* notify DP of failure. This should terminate any waits currently + * pending in the DP for that rank */ + Stream->DP_Interface->notifyConnFailure(&Svcs, Stream->DP_Stream, + FailedPeerRank); + } + else if (Stream->Status == PeerClosed) + { + /* ignore this. We expect a close after the connection is marked closed + */ + CP_verbose(Stream, PerRankVerbose, + "Reader-side Rank received a " + "connection-close event after close, " + "not unexpected\n"); + STREAM_MUTEX_UNLOCK(Stream); + // Don't notify DP, because this is part of normal shutdown and we don't + // want to kill pending reads + } + else if (Stream->Status == PeerFailed) + { + CP_verbose( + Stream, PerRankVerbose, + "Reader-side Rank received a " + "connection-close event after PeerFailed, already notified DP \n"); + // Don't notify DP, because we already have */ + STREAM_MUTEX_UNLOCK(Stream); + } + else + { + CP_verbose(Stream, CriticalVerbose, + "Got an unexpected connection close event\n"); + CP_verbose(Stream, PerStepVerbose, + "Reader-side Rank received a " + "connection-close event in unexpected " + "status %s\n", + SSTStreamStatusStr[Stream->Status]); + STREAM_MUTEX_UNLOCK(Stream); + } + PERFSTUBS_TIMER_STOP_FUNC(timer); +} + +// SstCurrentStep is only called by the main program thread and +// needs no locking as it only accesses data set by the main thread +extern long SstCurrentStep(SstStream Stream) { return Stream->ReaderTimestep; } + +static void releasePriorTimesteps(SstStream Stream, long Latest); +static void sendOneToEachWriterRank(SstStream s, CMFormat f, void *Msg, + void **WS_StreamPtr); + +static void **ParticipateInReaderInitDataExchange(SstStream Stream, + void *dpInfo, + void **ret_data_block) +{ + + struct _CP_DP_PairInfo combined_init; + struct _CP_ReaderInitInfo cpInfo; + + struct _CP_DP_PairInfo **pointers; + + cpInfo.ContactInfo = CP_GetContactString(Stream, NULL); + cpInfo.ReaderID = Stream; + + combined_init.CP_Info = (void **)&cpInfo; + combined_init.DP_Info = dpInfo; + + pointers = (struct _CP_DP_PairInfo **)CP_consolidateDataToRankZero( + Stream, &combined_init, Stream->CPInfo->PerRankReaderInfoFormat, + ret_data_block); + free(cpInfo.ContactInfo); + return (void **)pointers; +} + +static int HasAllPeers(SstStream Stream) +{ + int i, StillWaiting = 0; + if (!Stream->ConnectionsToWriter) + { + CP_verbose(Stream, PerRankVerbose, + "(PID %lx, TID %lx) Waiting for first Peer notification\n", + (long)gettid(), (long)getpid()); + return 0; + } + i = 0; + while (Stream->Peers[i] != -1) + { + int peer = Stream->Peers[i]; + if (Stream->ConnectionsToWriter[peer].CMconn == NULL) + StillWaiting++; + i++; + } + if (StillWaiting == 0) + { + CP_verbose(Stream, PerRankVerbose, + "Rank %d has all forward peer connections\n", Stream->Rank); + return 1; + } + else + { + CP_verbose(Stream, PerRankVerbose, + "Rank %d waiting for %d forward peer connections\n", + Stream->Rank, StillWaiting); + return 0; + } +} + +attr_list ContactWriter(SstStream Stream, char *Filename, SstParams Params, + SMPI_Comm comm, CMConnection *conn_p, + void **WriterFileID_p) +{ + int DataSize = 0; + attr_list RetVal = NULL; + + if (Stream->Rank == 0) + { + char *Writer0Contact = + readContactInfo(Filename, Stream, Params->OpenTimeoutSecs); + char *CMContactString = NULL; + CMConnection conn = NULL; + attr_list WriterRank0Contact; + + if (Writer0Contact) + { + + CMContactString = + malloc(strlen(Writer0Contact)); /* at least long enough */ + sscanf(Writer0Contact, "%p:%s", WriterFileID_p, CMContactString); + // printf("Writer contact info is fileID %p, contact info + // %s\n", + // WriterFileID, CMContactString); + free(Writer0Contact); + + if (globalNetinfoCallback) + { + (globalNetinfoCallback)(1, CP_GetContactString(Stream, NULL), + IPDiagString); + (globalNetinfoCallback)(2, CMContactString, NULL); + } + WriterRank0Contact = attr_list_from_string(CMContactString); + conn = CMget_conn(Stream->CPInfo->SharedCM->cm, WriterRank0Contact); + free_attr_list(WriterRank0Contact); + } + if (conn) + { + DataSize = strlen(CMContactString) + 1; + *conn_p = conn; + } + else + { + DataSize = 0; + *conn_p = NULL; + } + SMPI_Bcast(&DataSize, 1, SMPI_INT, 0, Stream->mpiComm); + if (DataSize != 0) + { + SMPI_Bcast(CMContactString, DataSize, SMPI_CHAR, 0, + Stream->mpiComm); + RetVal = attr_list_from_string(CMContactString); + } + if (CMContactString) + free(CMContactString); + } + else + { + SMPI_Bcast(&DataSize, 1, SMPI_INT, 0, Stream->mpiComm); + if (DataSize != 0) + { + char *Buffer = malloc(DataSize); + SMPI_Bcast(Buffer, DataSize, SMPI_CHAR, 0, Stream->mpiComm); + RetVal = attr_list_from_string(Buffer); + free(Buffer); + } + } + return RetVal; +} + +// SstReaderOpen is an SST reader entry point, called only by the +// main program thread It must be called by all ranks, and as it +// creates the only shared data structure, no locking is necessary +// prior to the CMCondition_wait() that is triggered in response to +// reader regsitration. +SstStream SstReaderOpen(const char *Name, SstParams Params, SMPI_Comm comm) +{ + SstStream Stream; + void *dpInfo; + struct _CP_DP_PairInfo **pointers; + void *data_block; + void *free_block; + writer_data_t ReturnData; + struct _ReaderActivateMsg Msg; + struct timeval Start, Stop, Diff; + char *Filename = strdup(Name); + CMConnection rank0_to_rank0_conn = NULL; + void *WriterFileID; + char NeededDataPlane[32] = { + 0}; // Don't name a data plane longer than 31 chars + + Stream = CP_newStream(); + Stream->Role = ReaderRole; + Stream->mpiComm = comm; + + SMPI_Comm_rank(Stream->mpiComm, &Stream->Rank); + SMPI_Comm_size(Stream->mpiComm, &Stream->CohortSize); + + CP_validateParams(Stream, Params, 0 /* reader */); + Stream->ConfigParams = Params; + + Stream->CPInfo = CP_getCPInfo(Stream->ConfigParams->ControlModule); + + Stream->FinalTimestep = INT_MAX; /* set this on close */ + Stream->LastDPNotifiedTimestep = -1; + + gettimeofday(&Start, NULL); + + attr_list WriterContactAttributes = ContactWriter( + Stream, Filename, Params, comm, &rank0_to_rank0_conn, &WriterFileID); + + if (WriterContactAttributes == NULL) + { + SstStreamDestroy(Stream); + free(Stream); + free(Filename); + return NULL; + } + + if (Stream->Rank == 0) + { + struct _DPQueryMsg DPQuery; + memset(&DPQuery, 0, sizeof(DPQuery)); + + DPQuery.WriterFile = WriterFileID; + DPQuery.WriterResponseCondition = + CMCondition_get(Stream->CPInfo->SharedCM->cm, rank0_to_rank0_conn); + + CMCondition_set_client_data(Stream->CPInfo->SharedCM->cm, + DPQuery.WriterResponseCondition, + &NeededDataPlane[0]); + + if (CMwrite(rank0_to_rank0_conn, + Stream->CPInfo->SharedCM->DPQueryFormat, &DPQuery) != 1) + { + CP_verbose( + Stream, CriticalVerbose, + "DPQuery message failed to send to writer in SstReaderOpen\n"); + } + + /* wait for "go" from writer */ + CP_verbose( + Stream, PerRankVerbose, + "Waiting for writer DPResponse message in SstReadOpen(\"%s\")\n", + Filename, DPQuery.WriterResponseCondition); + int result = CMCondition_wait(Stream->CPInfo->SharedCM->cm, + DPQuery.WriterResponseCondition); + if (result == 0) + { + fprintf(stderr, "The writer exited before contact could be made, " + "SST Open failed.\n"); + return NULL; + } + CP_verbose(Stream, PerRankVerbose, + "finished wait writer DPresponse message in read_open, " + "WRITER is using \"%s\" DataPlane\n", + &NeededDataPlane[0]); + + // NeededDP should now contain the name of the dataplane the writer is + // using + SMPI_Bcast(&NeededDataPlane[0], sizeof(NeededDataPlane), SMPI_CHAR, 0, + Stream->mpiComm); + } + else + { + SMPI_Bcast(&NeededDataPlane[0], sizeof(NeededDataPlane), SMPI_CHAR, 0, + Stream->mpiComm); + } + { + char *RequestedDP = Stream->ConfigParams->DataTransport; + Stream->ConfigParams->DataTransport = strdup(&NeededDataPlane[0]); + Stream->DP_Interface = + SelectDP(&Svcs, Stream, Stream->ConfigParams, Stream->Rank); + if (Stream->DP_Interface) + if (strcmp(Stream->DP_Interface->DPName, &NeededDataPlane[0]) != 0) + { + fprintf(stderr, + "The writer is using the %s DataPlane for SST data " + "transport, but the reader has failed to load this " + "transport. Communication cannot occur. See the SST " + "DataTransport engine parameter to force a match.", + NeededDataPlane); + return NULL; + } + if (RequestedDP) + free(RequestedDP); + } + + FinalizeCPInfo(Stream->CPInfo, Stream->DP_Interface); + + Stream->DP_Stream = Stream->DP_Interface->initReader( + &Svcs, Stream, &dpInfo, Stream->ConfigParams, WriterContactAttributes, + &Stream->Stats); + + free_attr_list(WriterContactAttributes); + + pointers = (struct _CP_DP_PairInfo **)ParticipateInReaderInitDataExchange( + Stream, dpInfo, &data_block); + + if (Stream->Rank == 0) + { + struct _CombinedWriterInfo WriterData; + struct _ReaderRegisterMsg ReaderRegister; + + memset(&ReaderRegister, 0, sizeof(ReaderRegister)); + memset(&WriterData, 0, sizeof(WriterData)); + WriterData.WriterCohortSize = -1; + ReaderRegister.WriterFile = WriterFileID; + ReaderRegister.WriterResponseCondition = + CMCondition_get(Stream->CPInfo->SharedCM->cm, rank0_to_rank0_conn); + ReaderRegister.ReaderCohortSize = Stream->CohortSize; + switch (Stream->ConfigParams->SpeculativePreloadMode) + { + case SpecPreloadOff: + case SpecPreloadOn: + ReaderRegister.SpecPreload = + (SpeculativePreloadMode) + Stream->ConfigParams->SpeculativePreloadMode; + break; + case SpecPreloadAuto: + ReaderRegister.SpecPreload = SpecPreloadOff; + if (Stream->CohortSize <= + Stream->ConfigParams->SpecAutoNodeThreshold) + { + ReaderRegister.SpecPreload = SpecPreloadOn; + } + break; + } + + ReaderRegister.CP_ReaderInfo = + malloc(ReaderRegister.ReaderCohortSize * sizeof(void *)); + ReaderRegister.DP_ReaderInfo = + malloc(ReaderRegister.ReaderCohortSize * sizeof(void *)); + for (int i = 0; i < ReaderRegister.ReaderCohortSize; i++) + { + ReaderRegister.CP_ReaderInfo[i] = + (CP_ReaderInitInfo)pointers[i]->CP_Info; + ReaderRegister.DP_ReaderInfo[i] = pointers[i]->DP_Info; + } + free(pointers); + + /* the response value is set in the handler */ + volatile struct _WriterResponseMsg *response = NULL; + CMCondition_set_client_data(Stream->CPInfo->SharedCM->cm, + ReaderRegister.WriterResponseCondition, + &response); + + if (CMwrite(rank0_to_rank0_conn, + Stream->CPInfo->SharedCM->ReaderRegisterFormat, + &ReaderRegister) != 1) + { + CP_verbose(Stream, CriticalVerbose, + "Message failed to send to writer in SstReaderOpen\n"); + } + free(ReaderRegister.CP_ReaderInfo); + free(ReaderRegister.DP_ReaderInfo); + + /* wait for "go" from writer */ + CP_verbose( + Stream, PerRankVerbose, + "Waiting for writer response message in SstReadOpen(\"%s\")\n", + Filename, ReaderRegister.WriterResponseCondition); + int result = CMCondition_wait(Stream->CPInfo->SharedCM->cm, + ReaderRegister.WriterResponseCondition); + if (result == 0) + { + fprintf(stderr, "The writer exited before the SST Reader Open " + "could be completed.\n"); + return NULL; + } + CP_verbose(Stream, PerRankVerbose, + "finished wait writer response message in read_open\n"); + + if (response) + { + WriterData.WriterCohortSize = response->WriterCohortSize; + WriterData.WriterConfigParams = response->WriterConfigParams; + WriterData.StartingStepNumber = response->NextStepNumber; + WriterData.CP_WriterInfo = response->CP_WriterInfo; + WriterData.DP_WriterInfo = response->DP_WriterInfo; + } + ReturnData = CP_distributeDataFromRankZero( + Stream, &WriterData, Stream->CPInfo->CombinedWriterInfoFormat, + &free_block); + } + else + { + ReturnData = CP_distributeDataFromRankZero( + Stream, NULL, Stream->CPInfo->CombinedWriterInfoFormat, + &free_block); + } + + free(data_block); + + if (ReturnData->WriterCohortSize == -1) + { + /* Rank 0 found no writer at that contact point, fail the stream */ + free(free_block); + return NULL; + } + + if (Stream->Rank == 0) + { + CP_verbose(Stream, SummaryVerbose, + "Opening Reader Stream.\nWriter stream params are:\n"); + CP_dumpParams(Stream, ReturnData->WriterConfigParams, + 0 /* writer side */); + CP_verbose(Stream, SummaryVerbose, "Reader stream params are:\n"); + CP_dumpParams(Stream, Stream->ConfigParams, 1 /* reader side */); + } + + // printf("I am reader rank %d, my info on writers is:\n", Stream->Rank); + // FMdump_data(FMFormat_of_original(Stream->CPInfo->combined_writer_Format), + // ReturnData, 1024000); + // printf("\n"); + + Stream->WriterCohortSize = ReturnData->WriterCohortSize; + Stream->WriterConfigParams = ReturnData->WriterConfigParams; + if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) && + (Stream->Rank == 0)) + { + CP_verbose(Stream, SummaryVerbose, + "Writer is doing FFS-based marshalling\n"); + } + if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalBP) && + (Stream->Rank == 0)) + { + CP_verbose(Stream, SummaryVerbose, + "Writer is doing BP-based marshalling\n"); + } + if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && + (Stream->Rank == 0)) + { + CP_verbose( + Stream, SummaryVerbose, + "Writer is using Minimum Connection Communication pattern (min)\n"); + } + if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) && + (Stream->Rank == 0)) + { + CP_verbose(Stream, SummaryVerbose, + "Writer is using Peer-based Communication pattern (peer)\n"); + } + STREAM_MUTEX_LOCK(Stream); + Stream->ReaderTimestep = ReturnData->StartingStepNumber - 1; + + if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) + { + /* + * Wait for connections and messages from writer side peers + */ + getPeerArrays(Stream->CohortSize, Stream->Rank, + Stream->WriterCohortSize, &Stream->Peers, NULL); + + while (!HasAllPeers(Stream)) + { + /* wait until we get the timestep metadata or something else changes + */ + STREAM_CONDITION_WAIT(Stream); + } + } + else + { + if (!Stream->ConnectionsToWriter) + { + Stream->ConnectionsToWriter = + calloc(sizeof(CP_PeerConnection), ReturnData->WriterCohortSize); + } + } + + for (int i = 0; i < ReturnData->WriterCohortSize; i++) + { + attr_list attrs = + attr_list_from_string(ReturnData->CP_WriterInfo[i]->ContactInfo); + Stream->ConnectionsToWriter[i].ContactList = attrs; + Stream->ConnectionsToWriter[i].RemoteStreamID = + ReturnData->CP_WriterInfo[i]->WriterID; + } + + // Deref the original connection to writer rank 0 (might still be open as a + // peer) + if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) + { + if (rank0_to_rank0_conn) + { + CMConnection_dereference(rank0_to_rank0_conn); + } + } + else + { + /* only rely on the rank 0 to rank 0 that we already have (if we're rank + * 0) */ + if (rank0_to_rank0_conn) + { + CMConnection conn = rank0_to_rank0_conn; + Stream->ConnectionsToWriter[0].CMconn = conn; + CMconn_register_close_handler(conn, ReaderConnCloseHandler, + (void *)Stream); + } + } + Stream->Status = Established; + gettimeofday(&Stop, NULL); + timersub(&Stop, &Start, &Diff); + Stream->OpenTimeSecs = (double)Diff.tv_usec / 1e6 + Diff.tv_sec; + gettimeofday(&Stream->ValidStartTime, NULL); + Stream->Filename = Filename; + Stream->ParamsBlock = free_block; + STREAM_MUTEX_UNLOCK(Stream); + AddToLastCallFreeList(Stream); + Stream->DP_Interface->provideWriterDataToReader( + &Svcs, Stream->DP_Stream, ReturnData->WriterCohortSize, + Stream->ConnectionsToWriter, ReturnData->DP_WriterInfo); + CP_verbose(Stream, PerRankVerbose, + "Sending Reader Activate messages to writer\n"); + memset(&Msg, 0, sizeof(Msg)); + sendOneToEachWriterRank(Stream, + Stream->CPInfo->SharedCM->ReaderActivateFormat, + &Msg, &Msg.WSR_Stream); + CP_verbose(Stream, PerStepVerbose, + "Finish opening Stream \"%s\", starting with Step number %d\n", + Filename, ReturnData->StartingStepNumber); + + return Stream; +} + +// SstReaderGetParams is an SST entry point only called by the main +// program thread. It can only be called after initialization and +// only accesses data installed durinig initialization, it needs no +// locking. +extern void SstReaderGetParams(SstStream Stream, + SstMarshalMethod *WriterMarshalMethod, + int *WriterIsRowMajor) +{ + *WriterMarshalMethod = + (SstMarshalMethod)Stream->WriterConfigParams->MarshalMethod; + *WriterIsRowMajor = Stream->WriterConfigParams->IsRowMajor; +} + +/* + * CP_PeerSetupHandler is called by the network handler thread in + * response to incoming PeerSetup messages to setup the reader-side + * Peer list + */ +extern void CP_PeerSetupHandler(CManager cm, CMConnection conn, void *Msg_v, + void *client_data, attr_list attrs) +{ + PERFSTUBS_TIMER_START_FUNC(timer); + SstStream Stream; + struct _PeerSetupMsg *Msg = (struct _PeerSetupMsg *)Msg_v; + Stream = (SstStream)Msg->RS_Stream; + STREAM_MUTEX_LOCK(Stream); + CP_verbose(Stream, TraceVerbose, + "Received peer setup from rank %d, conn %p\n", Msg->WriterRank, + conn); + if (!Stream->ConnectionsToWriter) + { + CP_verbose(Stream, TraceVerbose, "Allocating connections to writer\n"); + Stream->ConnectionsToWriter = + calloc(sizeof(CP_PeerConnection), Msg->WriterCohortSize); + } + CP_verbose(Stream, TraceVerbose, + "Received peer setup from rank %d, conn %p\n", Msg->WriterRank, + conn); + if (Msg->WriterRank != -1) + { + Stream->ConnectionsToWriter[Msg->WriterRank].CMconn = conn; + CMConnection_add_reference(conn); + Stream->FailureContactRank = Msg->WriterRank; + } + CMconn_register_close_handler(conn, ReaderConnCloseHandler, (void *)Stream); + STREAM_CONDITION_SIGNAL(Stream); + STREAM_MUTEX_UNLOCK(Stream); + PERFSTUBS_TIMER_STOP_FUNC(timer); +} + +void queueTimestepMetadataMsgAndNotify(SstStream Stream, + struct _TimestepMetadataMsg *tsm, + CMConnection conn) +{ + STREAM_ASSERT_LOCKED(Stream); + if (tsm->Timestep < Stream->DiscardPriorTimestep) + { + struct _ReleaseTimestepMsg Msg; + memset(&Msg, 0, sizeof(Msg)); + Msg.Timestep = tsm->Timestep; + + /* + * send each writer rank a release for this timestep (actually goes to + * WSR Streams) + */ + if (tsm->Metadata != NULL) + { + CP_verbose(Stream, PerStepVerbose, + "Sending ReleaseTimestep message for PRIOR DISCARD " + "timestep %d, one to each writer\n", + tsm->Timestep); + sendOneToEachWriterRank( + Stream, Stream->CPInfo->SharedCM->ReleaseTimestepFormat, &Msg, + &Msg.WSR_Stream); + } + else + { + CP_verbose(Stream, PerStepVerbose, + "Received discard notice for timestep %d, " + "ignoring in PRIOR DISCARD\n", + tsm->Timestep); + } + } + + struct _TimestepMetadataList *New = malloc(sizeof(struct _RegisterQueue)); + New->MetadataMsg = tsm; + New->Next = NULL; + if (Stream->Timesteps) + { + struct _TimestepMetadataList *Last = Stream->Timesteps; + while (Last->Next) + { + Last = Last->Next; + } + Last->Next = New; + } + else + { + Stream->Timesteps = New; + } + Stream->Stats.TimestepMetadataReceived++; + if (tsm->Metadata) + { + Stream->Stats.MetadataBytesReceived += + (tsm->Metadata->DataSize + tsm->AttributeData->DataSize); + } + CP_verbose(Stream, PerRankVerbose, + "Received a Timestep metadata message for timestep %d, " + "signaling condition\n", + tsm->Timestep); + + STREAM_CONDITION_SIGNAL(Stream); + if ((Stream->Rank == 0) && + (Stream->WriterConfigParams->CPCommPattern == SstCPCommMin) && + (Stream->ConfigParams->AlwaysProvideLatestTimestep)) + { + /* + * IFF we are in CommMin mode, AND we are to always provide + * the newest timestep, then when a new timestep arrives then + * we want to release timesteps that are older than it, NOT + * INCLUDING ANY TIMESTEP IN CURRENT USE. + */ + CP_verbose(Stream, TraceVerbose, + "Got a new timestep in AlwaysProvideLatestTimestep mode, " + "discard older than %d\n", + tsm->Timestep); + releasePriorTimesteps(Stream, tsm->Timestep); + } +} + +struct _SstMetaMetaBlockInternal +{ + size_t TimestepAdded; + char *BlockData; + size_t BlockSize; + char *ID; + size_t IDSize; +}; + +void AddFormatsToMetaMetaInfo(SstStream Stream, + struct _TimestepMetadataMsg *Msg) +{ + FFSFormatList Formats = Msg->Formats; + STREAM_ASSERT_LOCKED(Stream); + while (Formats) + { + Stream->InternalMetaMetaInfo = + realloc(Stream->InternalMetaMetaInfo, + (sizeof(struct _SstMetaMetaBlockInternal) * + (Stream->InternalMetaMetaCount + 1))); + struct _SstMetaMetaBlockInternal *NewInfo = + &Stream->InternalMetaMetaInfo[Stream->InternalMetaMetaCount]; + Stream->InternalMetaMetaCount++; + NewInfo->TimestepAdded = Msg->Timestep; + NewInfo->ID = malloc(Formats->FormatIDRepLen); + NewInfo->IDSize = Formats->FormatIDRepLen; + NewInfo->BlockData = malloc(Formats->FormatServerRepLen); + NewInfo->BlockSize = Formats->FormatServerRepLen; + memcpy(NewInfo->ID, Formats->FormatIDRep, Formats->FormatIDRepLen); + memcpy(NewInfo->BlockData, Formats->FormatServerRep, + Formats->FormatServerRepLen); + Formats = Formats->Next; + } +} + +void AddAttributesToAttrDataList(SstStream Stream, + struct _TimestepMetadataMsg *Msg) +{ + if (Stream->AttrsRetrieved) + { + int i = 0; + while (Stream->InternalAttrDataInfo && + Stream->InternalAttrDataInfo[i].BlockData) + { + free(Stream->InternalAttrDataInfo[i].BlockData); + i++; + } + free(Stream->InternalAttrDataInfo); + Stream->InternalAttrDataInfo = NULL; + Stream->InternalAttrDataCount = 0; + Stream->AttrsRetrieved = 0; + } + if (Msg->AttributeData->DataSize == 0) + return; + + Stream->InternalAttrDataInfo = realloc( + Stream->InternalAttrDataInfo, + (sizeof(struct _SstBlock) * (Stream->InternalAttrDataCount + 2))); + struct _SstBlock *NewInfo = + &Stream->InternalAttrDataInfo[Stream->InternalAttrDataCount]; + Stream->InternalAttrDataCount++; + NewInfo->BlockData = malloc(Msg->AttributeData->DataSize); + NewInfo->BlockSize = Msg->AttributeData->DataSize; + memcpy(NewInfo->BlockData, Msg->AttributeData->block, + Msg->AttributeData->DataSize); + memset(&Stream->InternalAttrDataInfo[Stream->InternalAttrDataCount], 0, + sizeof(struct _SstData)); +} + +// CP_TimestepMetadataHandler is called by the network handler thread +// to handle incoming TimestepMetadata messages +void CP_TimestepMetadataHandler(CManager cm, CMConnection conn, void *Msg_v, + void *client_data, attr_list attrs) +{ + PERFSTUBS_TIMER_START_FUNC(timer); + SstStream Stream; + struct _TimestepMetadataMsg *Msg = (struct _TimestepMetadataMsg *)Msg_v; + Stream = (SstStream)Msg->RS_Stream; + STREAM_MUTEX_LOCK(Stream); + if ((Stream->Rank != 0) || + (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer)) + { + /* All ranks are getting this */ + if (Msg->Metadata == NULL) + { + CP_verbose( + Stream, PerRankVerbose, + "Received a message that timestep %d has been discarded\n", + Msg->Timestep); + + /* + * before discarding, install any precious metadata from this + * message + */ + if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) + { + FFSMarshalInstallPreciousMetadata(Stream, Msg); + } + else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) + { + AddFormatsToMetaMetaInfo(Stream, Msg); + AddAttributesToAttrDataList(Stream, Msg); + } + STREAM_MUTEX_UNLOCK(Stream); + + return; + } + else + { + CP_verbose( + Stream, PerStepVerbose, + "Received an incoming metadata message for timestep %d\n", + Msg->Timestep); + } + /* arrange for this message data to stay around */ + CMtake_buffer(cm, Msg); + + queueTimestepMetadataMsgAndNotify(Stream, Msg, conn); + } + else + { + /* I must be rank 0 and only I got this, I'll need to distribute it to + * everyone */ + /* arrange for this message data to stay around */ + CMtake_buffer(cm, Msg); + + queueTimestepMetadataMsgAndNotify(Stream, Msg, conn); + } + STREAM_MUTEX_UNLOCK(Stream); + PERFSTUBS_TIMER_STOP_FUNC(timer); +} + +// CP_WriterResponseHandler is called by the network handler thread to +// handle WriterResponse messages. One of these will be sent to rank0 +// reader from rank0 writer in response to the ReaderRegister message. +// It will find rank0 writer in CMCondition_wait(). It's only action +// is to associate the incoming response message to the CMcondition +// we're waiting on,m so no locking is necessary. +void CP_WriterResponseHandler(CManager cm, CMConnection conn, void *Msg_v, + void *client_data, attr_list attrs) +{ + PERFSTUBS_REGISTER_THREAD(); + PERFSTUBS_TIMER_START_FUNC(timer); + struct _WriterResponseMsg *Msg = (struct _WriterResponseMsg *)Msg_v; + struct _WriterResponseMsg **response_ptr; + // fprintf(stderr, "Received a writer_response message for condition + // %d\n", + // Msg->WriterResponseCondition); + // fprintf(stderr, "The responding writer has cohort of size %d :\n", + // Msg->writer_CohortSize); + // for (int i = 0; i < Msg->writer_CohortSize; i++) { + // fprintf(stderr, " rank %d CP contact info: %s, %p\n", i, + // Msg->CP_WriterInfo[i]->ContactInfo, + // Msg->CP_WriterInfo[i]->WriterID); + // } + + /* arrange for this message data to stay around */ + CMtake_buffer(cm, Msg); + + /* attach the message to the CMCondition so it an be retrieved by the main + * thread */ + response_ptr = + CMCondition_get_client_data(cm, Msg->WriterResponseCondition); + *response_ptr = Msg; + + /* wake the main thread */ + CMCondition_signal(cm, Msg->WriterResponseCondition); + PERFSTUBS_TIMER_STOP_FUNC(timer); +} + +// CP_DPQueryResponseHandler is called by the network handler thread to +// handle DPQueryResponse messages. One of these will be sent to rank0 +// reader from rank0 writer in response to the DPQuery message. +// It will find rank0 writer in CMCondition_wait(). It's only action +// is to associate the incoming response message to the CMcondition +// we're waiting on,m so no locking is necessary. +void CP_DPQueryResponseHandler(CManager cm, CMConnection conn, void *Msg_v, + void *client_data, attr_list attrs) +{ + PERFSTUBS_REGISTER_THREAD(); + PERFSTUBS_TIMER_START_FUNC(timer); + struct _DPQueryResponseMsg *Msg = (struct _DPQueryResponseMsg *)Msg_v; + char *NeededDP_ptr; + + // fprintf(stderr, "Received a writer_response message for condition + // %d\n", + // Msg->WriterResponseCondition); + // fprintf(stderr, "The responding writer has cohort of size %d :\n", + // Msg->writer_CohortSize); + // for (int i = 0; i < Msg->writer_CohortSize; i++) { + // fprintf(stderr, " rank %d CP contact info: %s, %p\n", i, + // Msg->CP_WriterInfo[i]->ContactInfo, + // Msg->CP_WriterInfo[i]->WriterID); + // } + + /* attach the message to the CMCondition so it an be retrieved by the main + * thread */ + NeededDP_ptr = + CMCondition_get_client_data(cm, Msg->WriterResponseCondition); + strcpy(NeededDP_ptr, Msg->OperativeDP); + + /* wake the main thread */ + CMCondition_signal(cm, Msg->WriterResponseCondition); + PERFSTUBS_TIMER_STOP_FUNC(timer); +} + +// CP_WriterCloseHandler is called by the network handler thread to +// handle WriterResponse messages. One of these will be sent to rank0 +// reader from rank0 writer in response to the ReaderRegister message. +// It will find rank0 writer in CMCondition_wait(). It's only action +// is to associate the incoming response message to the CMcondition +// we're waiting on, so no locking is necessary. +extern void CP_WriterCloseHandler(CManager cm, CMConnection conn, void *Msg_v, + void *client_data, attr_list attrs) +{ + PERFSTUBS_TIMER_START_FUNC(timer); + WriterCloseMsg Msg = (WriterCloseMsg)Msg_v; + SstStream Stream = (SstStream)Msg->RS_Stream; + + STREAM_MUTEX_LOCK(Stream); + CP_verbose(Stream, PerStepVerbose, + "Received a writer close message. " + "Timestep %d was the final timestep.\n", + Msg->FinalTimestep); + + Stream->FinalTimestep = Msg->FinalTimestep; + Stream->Status = PeerClosed; + /* wake anyone that might be waiting */ + STREAM_CONDITION_SIGNAL(Stream); + STREAM_MUTEX_UNLOCK(Stream); + PERFSTUBS_TIMER_STOP_FUNC(timer); +} + +// CP_CommPatternLockedHandler is called by the network handler thread +// to handle CommPatternLocked messages. It can only be called +// post-registration and won't be called after Close. Lock to protect +// against race conditions in determining comm lock scenario. +extern void CP_CommPatternLockedHandler(CManager cm, CMConnection conn, + void *Msg_v, void *client_data, + attr_list attrs) +{ + CommPatternLockedMsg Msg = (CommPatternLockedMsg)Msg_v; + SstStream Stream = (SstStream)Msg->RS_Stream; + + STREAM_MUTEX_LOCK(Stream); + CP_verbose( + Stream, PerStepVerbose, + "Received a CommPatternLocked message, beginning with Timestep %d.\n", + Msg->Timestep); + + Stream->CommPatternLocked = 1; + Stream->CommPatternLockedTimestep = Msg->Timestep; + STREAM_MUTEX_UNLOCK(Stream); +} + +static long MaxQueuedMetadata(SstStream Stream) +{ + struct _TimestepMetadataList *Next; + long MaxTimestep = -1; + STREAM_ASSERT_LOCKED(Stream); + Next = Stream->Timesteps; + if (Next == NULL) + { + CP_verbose(Stream, TraceVerbose, "MaxQueued Timestep returning -1\n"); + return -1; + } + while (Next) + { + if (Next->MetadataMsg->Timestep >= MaxTimestep) + { + MaxTimestep = Next->MetadataMsg->Timestep; + } + Next = Next->Next; + } + CP_verbose(Stream, TraceVerbose, "MaxQueued Timestep returning %ld\n", + MaxTimestep); + return MaxTimestep; +} + +static long NextQueuedMetadata(SstStream Stream) +{ + struct _TimestepMetadataList *Next; + long MinTimestep = LONG_MAX; + STREAM_ASSERT_LOCKED(Stream); + Next = Stream->Timesteps; + if (Next == NULL) + { + CP_verbose(Stream, TraceVerbose, "NextQueued Timestep returning -1\n"); + return -1; + } + while (Next) + { + if (Next->MetadataMsg->Timestep <= MinTimestep) + { + MinTimestep = Next->MetadataMsg->Timestep; + } + Next = Next->Next; + } + CP_verbose(Stream, TraceVerbose, "NextQueued Timestep returning %ld\n", + MinTimestep); + return MinTimestep; +} + +// A delayed task to wake the stream after a specific time period +static void triggerDataCondition(CManager cm, void *vStream) +{ + SstStream Stream = (SstStream)vStream; + + STREAM_MUTEX_LOCK(Stream); + /* wake the sleeping main thread for timeout */ + STREAM_CONDITION_SIGNAL(Stream); + STREAM_MUTEX_UNLOCK(Stream); +} + +static void waitForMetadataWithTimeout(SstStream Stream, float timeout_secs) +{ + struct _TimestepMetadataList *Next; + struct timeval start, now, end; + int timeout_int_sec = floor(timeout_secs); + int timeout_int_usec = ((timeout_secs - floorf(timeout_secs)) * 1000000); + CMTaskHandle TimeoutTask = NULL; + + STREAM_ASSERT_LOCKED(Stream); + gettimeofday(&start, NULL); + Next = Stream->Timesteps; + CP_verbose( + Stream, PerRankVerbose, + "Wait for metadata with timeout %g secs starting at time %ld.%06ld \n", + timeout_secs, start.tv_sec, start.tv_usec); + if (Next) + { + CP_verbose(Stream, PerRankVerbose, + "Returning from wait with timeout, NO TIMEOUT\n"); + } + end.tv_sec = start.tv_sec + timeout_int_sec; + end.tv_usec = start.tv_usec + timeout_int_usec; + if (end.tv_usec > 1000000) + { + end.tv_sec++; + end.tv_usec -= 1000000; + } + if (end.tv_sec < start.tv_sec) + { + // rollover + end.tv_sec = INT_MAX; + } + // special case + if (timeout_secs == 0.0) + { + CP_verbose( + Stream, PerRankVerbose, + "Returning from wait With no data after zero timeout poll\n"); + return; + } + + TimeoutTask = + CMadd_delayed_task(Stream->CPInfo->SharedCM->cm, timeout_int_sec, + timeout_int_usec, triggerDataCondition, Stream); + while (1) + { + Next = Stream->Timesteps; + if (Next) + { + CMremove_task(TimeoutTask); + CP_verbose(Stream, PerRankVerbose, + "Returning from wait with timeout, NO TIMEOUT\n"); + return; + } + if (Stream->Status != Established) + { + CP_verbose(Stream, PerRankVerbose, + "Returning from wait with timeout, STREAM NO " + "LONGER ESTABLISHED\n"); + return; + } + gettimeofday(&now, NULL); + CP_verbose(Stream, TraceVerbose, + "timercmp, now is %ld.%06ld end is %ld.%06ld \n", + now.tv_sec, now.tv_usec, end.tv_sec, end.tv_usec); + if (timercmp(&now, &end, >)) + { + CP_verbose(Stream, PerRankVerbose, + "Returning from wait after timing out\n"); + return; + } + /* wait until we get the timestep metadata or something else changes */ + STREAM_CONDITION_WAIT(Stream); + } + /* NOTREACHED */ +} + +static void releasePriorTimesteps(SstStream Stream, long Latest) +{ + struct _TimestepMetadataList *Next, *Last; + STREAM_ASSERT_LOCKED(Stream); + CP_verbose(Stream, PerRankVerbose, + "Releasing any timestep earlier than %d\n", Latest); + Next = Stream->Timesteps; + Last = NULL; + while (Next) + { + if ((Next->MetadataMsg->Timestep < Latest) && + (Next->MetadataMsg->Timestep != Stream->CurrentWorkingTimestep)) + { + struct _TimestepMetadataList *This = Next; + struct _ReleaseTimestepMsg Msg; + Next = This->Next; + + /* + * before discarding, install any precious metadata from this + * message + */ + if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) + { + FFSMarshalInstallPreciousMetadata(Stream, This->MetadataMsg); + } + else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) + { + AddFormatsToMetaMetaInfo(Stream, This->MetadataMsg); + AddAttributesToAttrDataList(Stream, This->MetadataMsg); + } + + memset(&Msg, 0, sizeof(Msg)); + Msg.Timestep = This->MetadataMsg->Timestep; + + /* + * send each writer rank a release for this timestep (actually goes + * to WSR + * Streams) + */ + CP_verbose(Stream, PerRankVerbose, + "Sending ReleaseTimestep message for RELEASE " + "PRIOR timestep %d, one to each writer\n", + This->MetadataMsg->Timestep); + + if (Last == NULL) + { + Stream->Timesteps = Next; + } + else + { + Last->Next = Next; + } + STREAM_MUTEX_UNLOCK(Stream); + sendOneToEachWriterRank( + Stream, Stream->CPInfo->SharedCM->ReleaseTimestepFormat, &Msg, + &Msg.WSR_Stream); + if (This->MetadataMsg == NULL) + printf("READER RETURN_BUFFER, metadatamsg == %p, line %d\n", + This->MetadataMsg, __LINE__); + CMreturn_buffer(Stream->CPInfo->SharedCM->cm, This->MetadataMsg); + STREAM_MUTEX_LOCK(Stream); + free(This); + } + else + { + Last = Next; + Next = Next->Next; + } + } +} + +static void FreeTimestep(SstStream Stream, long Timestep) +{ + /* + * remove local metadata for that timestep + */ + struct _TimestepMetadataList *List = Stream->Timesteps; + + STREAM_ASSERT_LOCKED(Stream); + if (Stream->Timesteps->MetadataMsg->Timestep == Timestep) + { + Stream->Timesteps = List->Next; + if (List->MetadataMsg == NULL) + printf("READER RETURN_BUFFER, List->MEtadataMsg == %p, line %d\n", + List->MetadataMsg, __LINE__); + CMreturn_buffer(Stream->CPInfo->SharedCM->cm, List->MetadataMsg); + + free(List); + } + else + { + struct _TimestepMetadataList *last = List; + List = List->Next; + while (List != NULL) + { + if (List->MetadataMsg->Timestep == Timestep) + { + last->Next = List->Next; + if (List->MetadataMsg == NULL) + printf("READER RETURN_BUFFER, List->MEtadataMsg == %p, " + "line %d\n", + List->MetadataMsg, __LINE__); + CMreturn_buffer(Stream->CPInfo->SharedCM->cm, + List->MetadataMsg); + + free(List); + break; + } + last = List; + List = List->Next; + } + } +} + +static TSMetadataList waitForNextMetadata(SstStream Stream, long LastTimestep) +{ + TSMetadataList FoundTS = NULL; + CP_verbose(Stream, PerRankVerbose, + "Wait for next metadata after last timestep %d\n", LastTimestep); + while (1) + { + struct _TimestepMetadataList *Next; + Next = Stream->Timesteps; + while (Next) + { + CP_verbose(Stream, TraceVerbose, + "Examining metadata for Timestep %d\n", + Next->MetadataMsg->Timestep); + if (((Next->MetadataMsg->Metadata == NULL) || + (Next->MetadataMsg->Timestep < + Stream->DiscardPriorTimestep)) && + (FoundTS == NULL)) + { + /* + * Either this is a dummy timestep for something that + * was discarded on the writer side, or it is a + * timestep that satisfies DiscardPriorTimestep and + * we've already sent a release for it. Now is the + * time to install the 'precious' info that it carried + * (Attributes and formats) and then discard it. + */ + CP_verbose(Stream, PerRankVerbose, + "SstAdvanceStep installing precious " + "metadata for discarded TS %d\n", + Next->MetadataMsg->Timestep); + if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) + { + FFSMarshalInstallPreciousMetadata(Stream, + Next->MetadataMsg); + } + else if (Stream->WriterConfigParams->MarshalMethod == + SstMarshalBP5) + { + AddFormatsToMetaMetaInfo(Stream, Next->MetadataMsg); + AddAttributesToAttrDataList(Stream, Next->MetadataMsg); + } + TSMetadataList Tmp = Next; + Next = Next->Next; + FreeTimestep(Stream, Tmp->MetadataMsg->Timestep); + continue; + } + if (Next->MetadataMsg->Timestep >= LastTimestep) + { + if ((FoundTS == NULL) && + (Next->MetadataMsg->Timestep > LastTimestep)) + { + FoundTS = Next; + break; + } + else if ((FoundTS != NULL) && (FoundTS->MetadataMsg->Timestep > + Next->MetadataMsg->Timestep)) + { + FoundTS = Next; + break; + } + } + Next = Next->Next; + } + if (FoundTS) + { + CP_verbose(Stream, PerRankVerbose, + "Returning metadata for Timestep %d\n", + FoundTS->MetadataMsg->Timestep); + Stream->CurrentWorkingTimestep = FoundTS->MetadataMsg->Timestep; + return FoundTS; + } + /* didn't find a good next timestep, check Stream status */ + if ((Stream->Status != Established) || + ((Stream->FinalTimestep != INT_MAX) && + (Stream->FinalTimestep >= LastTimestep))) + { + CP_verbose(Stream, TraceVerbose, + "Stream Final Timestep is %d, last timestep was %d\n", + Stream->FinalTimestep, LastTimestep); + if (Stream->Status == NotOpen) + { + CP_verbose(Stream, PerRankVerbose, + "Wait for next metadata returning NULL because " + "channel was never fully established\n"); + } + else if (Stream->Status == PeerFailed) + { + CP_verbose(Stream, PerRankVerbose, + "Wait for next metadata returning NULL because " + "the connection failed before final timestep " + "notification\n"); + } + else + { + CP_verbose(Stream, PerStepVerbose, + "Wait for next metadata returning NULL, status %d ", + Stream->Status); + } + /* closed or failed, return NULL */ + Stream->CurrentWorkingTimestep = -1; + return NULL; + } + CP_verbose(Stream, PerRankVerbose, + "Waiting for metadata for a Timestep later than TS %d\n", + LastTimestep); + CP_verbose(Stream, TraceVerbose, + "(PID %lx, TID %lx) Stream status is %s\n", (long)getpid(), + (long)gettid(), SSTStreamStatusStr[Stream->Status]); + /* wait until we get the timestep metadata or something else changes */ + STREAM_CONDITION_WAIT(Stream); + } + /* NOTREACHED */ +} + +// SstGetCurMetadata is an SST entry point only called by the main +// program thread. Only accesses the CurrentMetadata field which is +// touched only by other subroutines called by the main program +// thread, it needs no locking. +extern SstFullMetadata SstGetCurMetadata(SstStream Stream) +{ + return Stream->CurrentMetadata; +} + +extern SstMetaMetaList SstGetNewMetaMetaData(SstStream Stream, long Timestep) +{ + int RetCount = 0; + STREAM_MUTEX_LOCK(Stream); + int64_t LastRetTimestep = -1; + int i; + for (i = 0; i < Stream->InternalMetaMetaCount; i++) + { + if ((LastRetTimestep == -1) || + (Stream->InternalMetaMetaInfo[i].TimestepAdded >= LastRetTimestep)) + RetCount++; + } + if (RetCount == 0) + { + STREAM_MUTEX_UNLOCK(Stream); + return NULL; + } + SstMetaMetaList ret = malloc(sizeof(ret[0]) * (RetCount + 1)); + int j = 0; + for (i = 0; i < Stream->InternalMetaMetaCount; i++) + { + if ((LastRetTimestep == -1) || + (Stream->InternalMetaMetaInfo[i].TimestepAdded >= LastRetTimestep)) + { + // no copies, keep memory ownership in SST + ret[j].BlockData = Stream->InternalMetaMetaInfo[i].BlockData; + ret[j].BlockSize = Stream->InternalMetaMetaInfo[i].BlockSize; + ret[j].ID = Stream->InternalMetaMetaInfo[i].ID; + ret[j].IDSize = Stream->InternalMetaMetaInfo[i].IDSize; + j++; + } + } + memset(&ret[j], 0, sizeof(ret[j])); + LastRetTimestep = Timestep; + STREAM_MUTEX_UNLOCK(Stream); + return ret; +} + +extern SstBlock SstGetAttributeData(SstStream Stream, long Timestep) +{ + STREAM_MUTEX_LOCK(Stream); + struct _SstBlock *InternalAttrDataInfo = Stream->InternalAttrDataInfo; + Stream->AttrsRetrieved = 1; + STREAM_MUTEX_UNLOCK(Stream); + return InternalAttrDataInfo; +} + +static void AddToReadStats(SstStream Stream, int Rank, long Timestep, + size_t Length) +{ + if (!Stream->RanksRead) + Stream->RanksRead = calloc(1, Stream->WriterCohortSize); + Stream->RanksRead[Rank] = 1; + Stream->Stats.BytesRead += Length; +} + +#ifndef min +#define min(a, b) (((a) < (b)) ? (a) : (b)) +#endif + +static void ReleaseTSReadStats(SstStream Stream, long Timestep) +{ + int ThisFanIn = 0; + if (Stream->RanksRead) + { + for (int i = 0; i < Stream->WriterCohortSize; i++) + { + if (Stream->RanksRead[i]) + ThisFanIn++; + } + memset(Stream->RanksRead, 0, Stream->WriterCohortSize); + } + if (Stream->Stats.TimestepsConsumed == 1) + { + Stream->Stats.RunningFanIn = ThisFanIn; + } + else + { + Stream->Stats.RunningFanIn = + Stream->Stats.RunningFanIn + + ((double)ThisFanIn - Stream->Stats.RunningFanIn) / + min(Stream->Stats.TimestepsConsumed, 100); + } +} + +// SstReadRemotememory is only called by the main +// program thread. +extern void *SstReadRemoteMemory(SstStream Stream, int Rank, long Timestep, + size_t Offset, size_t Length, void *Buffer, + void *DP_TimestepInfo) +{ + if (Stream->ConfigParams->ReaderShortCircuitReads) + return NULL; + Stream->Stats.BytesTransferred += Length; + AddToReadStats(Stream, Rank, Timestep, Length); + return Stream->DP_Interface->readRemoteMemory( + &Svcs, Stream->DP_Stream, Rank, Timestep, Offset, Length, Buffer, + DP_TimestepInfo); +} + +static void sendOneToEachWriterRank(SstStream Stream, CMFormat f, void *Msg, + void **WS_StreamPtr) +{ + if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) + { + int i = 0; + while (Stream->Peers[i] != -1) + { + int peer = Stream->Peers[i]; + CMConnection conn = Stream->ConnectionsToWriter[peer].CMconn; + /* add the writer Stream identifier to each outgoing + * message */ + *WS_StreamPtr = Stream->ConnectionsToWriter[peer].RemoteStreamID; + if (CMwrite(conn, f, Msg) != 1) + { + switch (Stream->Status) + { + case NotOpen: + case Opening: + case Established: + CP_verbose(Stream, CriticalVerbose, + "Message failed to send to writer %d (%p)\n", + peer, *WS_StreamPtr); + break; + case PeerClosed: + case PeerFailed: + case Closed: + case Destroyed: + // Don't warn on send failures for closing/closed clients + break; + } + } + i++; + } + } + else + { + if (Stream->Rank == 0) + { + int peer = 0; + CMConnection conn = Stream->ConnectionsToWriter[peer].CMconn; + /* add the writer Stream identifier to each outgoing + * message */ + *WS_StreamPtr = Stream->ConnectionsToWriter[peer].RemoteStreamID; + if (CMwrite(conn, f, Msg) != 1) + { + switch (Stream->Status) + { + case NotOpen: + case Opening: + case Established: + CP_verbose(Stream, CriticalVerbose, + "Message failed to send to writer %d (%p)\n", + peer, *WS_StreamPtr); + break; + case PeerClosed: + case PeerFailed: + case Closed: + case Destroyed: + // Don't warn on send failures for closing/closed clients + break; + } + } + } + } +} + +// SstReaderDefinitionLock is only called by the main +// program thread. +extern void SstReaderDefinitionLock(SstStream Stream, long EffectiveTimestep) +{ + struct _LockReaderDefinitionsMsg Msg; + + memset(&Msg, 0, sizeof(Msg)); + Msg.Timestep = EffectiveTimestep; + + sendOneToEachWriterRank( + Stream, Stream->CPInfo->SharedCM->LockReaderDefinitionsFormat, &Msg, + &Msg.WSR_Stream); +} + +// SstReleaseStep is only called by the main program thread. It +// locks to protect the timestep list before freeing the local +// representation of the resleased timestep. +extern void SstReleaseStep(SstStream Stream) +{ + long Timestep = Stream->ReaderTimestep; + struct _ReleaseTimestepMsg Msg; + + PERFSTUBS_TIMER_START_FUNC(timer); + STREAM_MUTEX_LOCK(Stream); + if (Stream->DP_Interface->RSReleaseTimestep) + { + (Stream->DP_Interface->RSReleaseTimestep)(&Svcs, Stream->DP_Stream, + Timestep); + } + ReleaseTSReadStats(Stream, Timestep); + STREAM_MUTEX_UNLOCK(Stream); + + if ((Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) || + (Stream->Rank == 0)) + { + STREAM_MUTEX_LOCK(Stream); + FreeTimestep(Stream, Timestep); + STREAM_MUTEX_UNLOCK(Stream); + } + + SMPI_Barrier(Stream->mpiComm); + + memset(&Msg, 0, sizeof(Msg)); + Msg.Timestep = Timestep; + + /* + * send each writer rank a release for this timestep (actually goes to WSR + * Streams) + */ + CP_verbose( + Stream, PerRankVerbose, + "Sending ReleaseTimestep message for timestep %d, one to each writer\n", + Timestep); + sendOneToEachWriterRank(Stream, + Stream->CPInfo->SharedCM->ReleaseTimestepFormat, + &Msg, &Msg.WSR_Stream); + + if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) + { + FFSClearTimestepData(Stream); + } + PERFSTUBS_TIMER_STOP_FUNC(timer); +} + +static void NotifyDPArrivedMetadata(SstStream Stream, + struct _TimestepMetadataMsg *MetadataMsg) +{ + if ((MetadataMsg->Metadata != NULL) && + (MetadataMsg->Timestep > Stream->LastDPNotifiedTimestep)) + { + if (Stream->DP_Interface->timestepArrived) + { + Stream->DP_Interface->timestepArrived(&Svcs, Stream->DP_Stream, + MetadataMsg->Timestep, + MetadataMsg->PreloadMode); + } + Stream->LastDPNotifiedTimestep = MetadataMsg->Timestep; + } +} + +/* + * wait for metadata for Timestep indicated to arrive, or fail with EndOfStream + * or Error + */ +static SstStatusValue SstAdvanceStepPeer(SstStream Stream, SstStepMode mode, + const float timeout_sec) +{ + + TSMetadataList Entry; + + PERFSTUBS_TIMER_START(timer, "Waiting on metadata per rank per timestep"); + + if ((timeout_sec >= 0.0) || (mode == SstLatestAvailable)) + { + struct _GlobalOpInfo + { + float timeout_sec; + int mode; + long LatestTimestep; + }; + struct _GlobalOpInfo my_info; + struct _GlobalOpInfo *global_info = NULL; + long NextTimestep; + + if (Stream->Rank == 0) + { + global_info = malloc(sizeof(my_info) * Stream->CohortSize); + CP_verbose(Stream, PerRankVerbose, + "In special case of advancestep, mode is %d, " + "Timeout Sec is %g, flt_max is %g\n", + mode, timeout_sec, FLT_MAX); + } + my_info.LatestTimestep = MaxQueuedMetadata(Stream); + my_info.timeout_sec = timeout_sec; + my_info.mode = mode; + SMPI_Gather(&my_info, sizeof(my_info), SMPI_CHAR, global_info, + sizeof(my_info), SMPI_CHAR, 0, Stream->mpiComm); + if (Stream->Rank == 0) + { + long Biggest = -1; + long Smallest = LONG_MAX; + for (int i = 0; i < Stream->CohortSize; i++) + { + if (global_info[i].LatestTimestep > Biggest) + { + Biggest = global_info[i].LatestTimestep; + } + if (global_info[i].LatestTimestep < Smallest) + { + Smallest = global_info[i].LatestTimestep; + } + } + + free(global_info); + + /* + * Several situations are possible here, depending upon + * whether or not a timeout is specified and/or + * LatestAvailable is specified, and whether or not we + * have timesteps queued anywhere. If they want + * LatestAvailable and we have any Timesteps queued + * anywhere, we decide upon a timestep to return and + * assume that all ranks will get it soon (or else we're + * in failure mode). If there are no timesteps queued + * anywhere, then we're going to wait for timeout seconds + * ON RANK 0. RANK 0 AND ONLY RANK 0 WILL DECIDE IF WE + * TIMEOUT OR RETURN WITH DATA. It is possible that other + * ranks get timestep metadata before the timeout expires, + * but we don't care. Whatever would happen on rank 0 is + * what happens everywhere. + */ + + if (Biggest == -1) + { + // AllQueuesEmpty + if (timeout_sec >= 0.0) + { + waitForMetadataWithTimeout(Stream, timeout_sec); + } + else + { + waitForMetadataWithTimeout(Stream, FLT_MAX); + } + NextTimestep = + MaxQueuedMetadata(Stream); /* might be -1 if we timed out */ + } + else + { + /* + * we've actually got a choice here. "Smallest" is + * the LatestTimestep that everyone has. "Biggest" is + * the Latest that someone has seen, and presumably + * others will see shortly. I'm going to go with Biggest + * until I have a reason to prefer one or the other. + */ + if (mode == SstLatestAvailable) + { + // latest available + CP_verbose(Stream, PerRankVerbose, + "Returning Biggest timestep available " + "%ld because LatestAvailable " + "specified\n", + Biggest); + NextTimestep = Biggest; + } + else + { + // next available (take the oldest that everyone has) + CP_verbose(Stream, PerRankVerbose, + "Returning Smallest timestep available " + "%ld because NextAvailable specified\n", + Smallest); + NextTimestep = Smallest; + } + } + if ((NextTimestep == -1) && (Stream->Status == PeerClosed)) + { + /* force everyone to close */ + NextTimestep = -2; + } + if ((NextTimestep == -1) && (Stream->Status == PeerFailed)) + { + /* force everyone to return failed */ + NextTimestep = -3; + } + SMPI_Bcast(&NextTimestep, 1, SMPI_LONG, 0, Stream->mpiComm); + } + else + { + STREAM_MUTEX_UNLOCK(Stream); + SMPI_Bcast(&NextTimestep, 1, SMPI_LONG, 0, Stream->mpiComm); + STREAM_MUTEX_LOCK(Stream); + } + if (NextTimestep == -2) + { + /* there was a peerClosed setting on rank0, we'll close */ + Stream->Status = PeerClosed; + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStep returning EndOfStream at timestep %d\n", + Stream->ReaderTimestep); + return SstEndOfStream; + } + if (NextTimestep == -3) + { + /* there was a peerFailed setting on rank0, we'll fail */ + Stream->Status = PeerFailed; + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStep returning EndOfStream at timestep %d\n", + Stream->ReaderTimestep); + STREAM_MUTEX_UNLOCK(Stream); + Stream->DP_Interface->notifyConnFailure(&Svcs, Stream->DP_Stream, + 0); + STREAM_MUTEX_LOCK(Stream); + return SstFatalError; + } + if (NextTimestep == -1) + { + CP_verbose(Stream, PerStepVerbose, + "AdvancestepPeer timing out on no data\n"); + return SstTimeout; + } + if (mode == SstLatestAvailable) + { + // latest available + /* release all timesteps from before NextTimestep, then fall + * through below */ + /* Side note: It is possible that someone could get a "prior" + * timestep after this point. It has to be released upon + * arrival */ + CP_verbose(Stream, PerStepVerbose, + "timed or Latest timestep, determined NextTimestep %d\n", + NextTimestep); + Stream->DiscardPriorTimestep = NextTimestep; + releasePriorTimesteps(Stream, NextTimestep); + } + } + + Entry = waitForNextMetadata(Stream, Stream->ReaderTimestep); + + PERFSTUBS_TIMER_STOP(timer); + + if (Entry) + { + NotifyDPArrivedMetadata(Stream, Entry->MetadataMsg); + + if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) + { + PERFSTUBS_TIMER_START(timerFFS, "FFS marshaling case"); + FFSMarshalInstallMetadata(Stream, Entry->MetadataMsg); + PERFSTUBS_TIMER_STOP(timerFFS); + } + else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) + { + AddFormatsToMetaMetaInfo(Stream, Entry->MetadataMsg); + AddAttributesToAttrDataList(Stream, Entry->MetadataMsg); + } + Stream->ReaderTimestep = Entry->MetadataMsg->Timestep; + SstFullMetadata Mdata = malloc(sizeof(struct _SstFullMetadata)); + memset(Mdata, 0, sizeof(struct _SstFullMetadata)); + Mdata->WriterCohortSize = Entry->MetadataMsg->CohortSize; + Mdata->WriterMetadata = + malloc(sizeof(Mdata->WriterMetadata[0]) * Mdata->WriterCohortSize); + for (int i = 0; i < Mdata->WriterCohortSize; i++) + { + Mdata->WriterMetadata[i] = &Entry->MetadataMsg->Metadata[i]; + } + if (Stream->DP_Interface->TimestepInfoFormats == NULL) + { + // DP didn't provide struct info, no valid data + Mdata->DP_TimestepInfo = NULL; + } + else + { + Mdata->DP_TimestepInfo = Entry->MetadataMsg->DP_TimestepInfo; + } + Stream->CurrentWorkingTimestep = Entry->MetadataMsg->Timestep; + Stream->CurrentMetadata = Mdata; + + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStep returning Success on timestep %d\n", + Entry->MetadataMsg->Timestep); + return SstSuccess; + } + if (Stream->Status == PeerClosed) + { + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStepPeer returning EndOfStream at timestep %d\n", + Stream->ReaderTimestep); + return SstEndOfStream; + } + else + { + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStep returning FatalError at timestep %d\n", + Stream->ReaderTimestep); + return SstFatalError; + } +} + +static SstStatusValue SstAdvanceStepMin(SstStream Stream, SstStepMode mode, + const float timeout_sec) +{ + TSMetadataDistributionMsg ReturnData; + struct _TimestepMetadataMsg *MetadataMsg; + SstStatusValue ret; + + void *free_block; + + if (Stream->Rank == 0) + { + struct _TimestepMetadataDistributionMsg msg; + SstStatusValue return_value = SstSuccess; + TSMetadataList RootEntry = NULL; + + memset(&msg, 0, sizeof(msg)); + msg.TSmsg = NULL; + msg.CommPatternLockedTimestep = -1; + if (Stream->CommPatternLocked == 1) + { + msg.CommPatternLockedTimestep = Stream->CommPatternLockedTimestep; + } + if ((timeout_sec >= 0.0) || (mode == SstLatestAvailable)) + { + long NextTimestep = -1; + long LatestTimestep = MaxQueuedMetadata(Stream); + /* + * Several situations are possible here, depending upon + * whether or not a timeout is specified and/or + * LatestAvailable is specified, and whether or not we + * have timesteps queued anywhere. If they want + * LatestAvailable and we have any Timesteps queued + * anywhere, we decide upon a timestep to return and + * assume that all ranks will get it soon (or else we're + * in failure mode). If there are no timesteps queued + * anywhere, then we're going to wait for timeout seconds + * ON RANK 0. RANK 0 AND ONLY RANK 0 WILL DECIDE IF WE + * TIMEOUT OR RETURN WITH DATA. It is possible that other + * ranks get timestep metadata before the timeout expires, + * but we don't care. Whatever would happen on rank 0 is + * what happens everywhere. + */ + + if (LatestTimestep == -1) + { + // AllQueuesEmpty + if (timeout_sec >= 0.0) + { + waitForMetadataWithTimeout(Stream, timeout_sec); + } + else + { + waitForMetadataWithTimeout(Stream, FLT_MAX); + } + NextTimestep = + MaxQueuedMetadata(Stream); /* might be -1 if we timed out */ + } + else + { + if (mode == SstLatestAvailable) + { + // latest available + CP_verbose(Stream, PerStepVerbose, + "Returning latest timestep available " + "%ld because LatestAvailable " + "specified\n", + LatestTimestep); + NextTimestep = LatestTimestep; + } + else + { + // next available (take the oldest that everyone has) + NextTimestep = NextQueuedMetadata(Stream); + CP_verbose(Stream, PerStepVerbose, + "Returning Smallest timestep available " + "%ld because NextAvailable specified\n", + NextTimestep); + } + } + if (Stream->Status == PeerFailed) + { + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStepMin returning FatalError because of " + "connection failure at timestep %d\n", + Stream->ReaderTimestep); + return_value = SstFatalError; + } + else if ((NextTimestep == -1) && (Stream->Status == PeerClosed)) + { + CP_verbose( + Stream, PerStepVerbose, + "SstAdvanceStepMin returning EndOfStream at timestep %d\n", + Stream->ReaderTimestep); + return_value = SstEndOfStream; + } + else if (NextTimestep == -1) + { + CP_verbose(Stream, PerStepVerbose, + "AdvancestepMin timing out on no data\n"); + return_value = SstTimeout; + } + else if (mode == SstLatestAvailable) + { + // latest available + /* release all timesteps from before NextTimestep, then fall + * through below */ + /* Side note: It is possible that someone could get a "prior" + * timestep after this point. It has to be released upon + * arrival */ + CP_verbose( + Stream, PerStepVerbose, + "timed or Latest timestep, determined NextTimestep %d\n", + NextTimestep); + Stream->DiscardPriorTimestep = NextTimestep; + releasePriorTimesteps(Stream, NextTimestep); + } + } + if (Stream->Status == PeerFailed) + { + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStepMin returning FatalError because of " + "conn failure at timestep %d\n", + Stream->ReaderTimestep); + return_value = SstFatalError; + } + if (return_value == SstSuccess) + { + RootEntry = waitForNextMetadata(Stream, Stream->ReaderTimestep); + } + if (RootEntry) + { + msg.TSmsg = RootEntry->MetadataMsg; + msg.ReturnValue = return_value; + CP_verbose(Stream, TraceVerbose, + "Setting TSmsg to Rootentry value\n"); + } + else + { + if (return_value == SstSuccess) + { + if (Stream->Status == PeerClosed) + { + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStepMin rank 0 returning " + "EndOfStream at timestep %d\n", + Stream->ReaderTimestep); + msg.ReturnValue = SstEndOfStream; + } + else + { + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStepMin rank 0 returning " + "FatalError at timestep %d\n", + Stream->ReaderTimestep); + msg.ReturnValue = SstFatalError; + } + CP_verbose(Stream, TraceVerbose, "Setting TSmsg to NULL\n"); + msg.TSmsg = NULL; + } + else + { + msg.ReturnValue = return_value; + } + } + // AddArrivedMetadataInfo(Stream, &msg); + ReturnData = CP_distributeDataFromRankZero( + Stream, &msg, Stream->CPInfo->TimestepDistributionFormat, + &free_block); + } + else + { + + STREAM_MUTEX_UNLOCK(Stream); + ReturnData = CP_distributeDataFromRankZero( + Stream, NULL, Stream->CPInfo->CombinedWriterInfoFormat, + &free_block); + STREAM_MUTEX_LOCK(Stream); + } + ret = (SstStatusValue)ReturnData->ReturnValue; + + if (ReturnData->ReturnValue != SstSuccess) + { + if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) && + (ReturnData->TSmsg)) + { + CP_verbose( + Stream, PerRankVerbose, + "SstAdvanceStep installing precious metadata before exiting\n"); + FFSMarshalInstallPreciousMetadata(Stream, ReturnData->TSmsg); + } + else if ((Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) && + (ReturnData->TSmsg)) + { + AddFormatsToMetaMetaInfo(Stream, ReturnData->TSmsg); + AddAttributesToAttrDataList(Stream, ReturnData->TSmsg); + } + + free(free_block); + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStep returning FAILURE\n"); + return ret; + } + MetadataMsg = ReturnData->TSmsg; + + if (ReturnData->CommPatternLockedTimestep != -1) + { + Stream->CommPatternLockedTimestep = + ReturnData->CommPatternLockedTimestep; + Stream->CommPatternLocked = 2; + STREAM_MUTEX_UNLOCK(Stream); + if (Stream->DP_Interface->RSreadPatternLocked) + { + Stream->DP_Interface->RSreadPatternLocked( + &Svcs, Stream->DP_Stream, Stream->CommPatternLockedTimestep); + } + STREAM_MUTEX_LOCK(Stream); + } + if (MetadataMsg) + { + NotifyDPArrivedMetadata(Stream, MetadataMsg); + + Stream->ReaderTimestep = MetadataMsg->Timestep; + if (Stream->WriterConfigParams->MarshalMethod == SstMarshalFFS) + { + CP_verbose(Stream, TraceVerbose, + "Calling install metadata from metadata block %p\n", + MetadataMsg); + FFSMarshalInstallMetadata(Stream, MetadataMsg); + } + else if (Stream->WriterConfigParams->MarshalMethod == SstMarshalBP5) + { + AddFormatsToMetaMetaInfo(Stream, MetadataMsg); + AddAttributesToAttrDataList(Stream, MetadataMsg); + } + SstFullMetadata Mdata = malloc(sizeof(struct _SstFullMetadata)); + memset(Mdata, 0, sizeof(struct _SstFullMetadata)); + Mdata->WriterCohortSize = MetadataMsg->CohortSize; + Mdata->WriterMetadata = + malloc(sizeof(Mdata->WriterMetadata[0]) * Mdata->WriterCohortSize); + for (int i = 0; i < Mdata->WriterCohortSize; i++) + { + Mdata->WriterMetadata[i] = &MetadataMsg->Metadata[i]; + } + if (Stream->DP_Interface->TimestepInfoFormats == NULL) + { + // DP didn't provide struct info, no valid data + Mdata->DP_TimestepInfo = NULL; + } + else + { + Mdata->DP_TimestepInfo = MetadataMsg->DP_TimestepInfo; + } + Stream->CurrentWorkingTimestep = MetadataMsg->Timestep; + Mdata->FreeBlock = free_block; + Stream->CurrentMetadata = Mdata; + + CP_verbose(Stream, PerStepVerbose, + "SstAdvanceStep returning Success on timestep %d\n", + MetadataMsg->Timestep); + return SstSuccess; + } + CP_verbose(Stream, TraceVerbose, "SstAdvanceStep final return\n"); + return ret; +} + +// SstAdvanceStep is only called by the main program thread. +extern SstStatusValue SstAdvanceStep(SstStream Stream, const float timeout_sec) +{ + + SstStatusValue result; + STREAM_MUTEX_LOCK(Stream); + if (Stream->CurrentMetadata != NULL) + { + if (Stream->CurrentMetadata->FreeBlock) + { + free(Stream->CurrentMetadata->FreeBlock); + } + if (Stream->CurrentMetadata->WriterMetadata) + { + free(Stream->CurrentMetadata->WriterMetadata); + } + free(Stream->CurrentMetadata); + Stream->CurrentMetadata = NULL; + } + + if (Stream->WriterConfigParams->StepDistributionMode == StepsOnDemand) + { + struct _ReaderRequestStepMsg Msg; + CP_verbose(Stream, PerRankVerbose, + "Sending Reader Request Step messages to writer\n"); + memset(&Msg, 0, sizeof(Msg)); + sendOneToEachWriterRank( + Stream, Stream->CPInfo->SharedCM->ReaderRequestStepFormat, &Msg, + &Msg.WSR_Stream); + } + + SstStepMode mode = SstNextAvailable; + if (Stream->ConfigParams->AlwaysProvideLatestTimestep) + { + mode = SstLatestAvailable; + } + if (Stream->WriterConfigParams->CPCommPattern == SstCPCommPeer) + { + result = SstAdvanceStepPeer(Stream, mode, timeout_sec); + } + else + { + result = SstAdvanceStepMin(Stream, mode, timeout_sec); + } + if (result == SstSuccess) + { + Stream->Stats.TimestepsConsumed++; + } + STREAM_MUTEX_UNLOCK(Stream); + return result; +} + +// SstReaderClose is only called by the main program thread and +// needs no locking as it only accesses data set by the main thread +extern void SstReaderClose(SstStream Stream) +{ + /* need to have a reader-side shutdown protocol, but for now, just sleep for + * a little while to makes sure our release message for the last timestep + * got received */ + struct timeval CloseTime, Diff; + struct _ReaderCloseMsg Msg; + /* wait until each reader rank has done SstReaderClose() */ + SMPI_Barrier(Stream->mpiComm); + gettimeofday(&CloseTime, NULL); + timersub(&CloseTime, &Stream->ValidStartTime, &Diff); + memset(&Msg, 0, sizeof(Msg)); + sendOneToEachWriterRank(Stream, Stream->CPInfo->SharedCM->ReaderCloseFormat, + &Msg, &Msg.WSR_Stream); + Stream->Stats.StreamValidTimeSecs = + (double)Diff.tv_usec / 1e6 + Diff.tv_sec; + + if (Stream->CPVerbosityLevel >= (int)SummaryVerbose) + { + DoStreamSummary(Stream); + } + CMusleep(Stream->CPInfo->SharedCM->cm, 100000); + if (Stream->CurrentMetadata != NULL) + { + if (Stream->CurrentMetadata->FreeBlock) + free(Stream->CurrentMetadata->FreeBlock); + if (Stream->CurrentMetadata->WriterMetadata) + free(Stream->CurrentMetadata->WriterMetadata); + free(Stream->CurrentMetadata); + Stream->CurrentMetadata = NULL; + } + STREAM_MUTEX_LOCK(Stream); + for (int i = 0; i < Stream->InternalMetaMetaCount; i++) + { + free(Stream->InternalMetaMetaInfo[i].ID); + free(Stream->InternalMetaMetaInfo[i].BlockData); + } + free(Stream->InternalMetaMetaInfo); + if (Stream->InternalAttrDataInfo) + { + for (int i = 0; i < Stream->InternalAttrDataCount; i++) + { + free(Stream->InternalAttrDataInfo[i].BlockData); + } + free(Stream->InternalAttrDataInfo); + } + STREAM_MUTEX_UNLOCK(Stream); +} + +// SstWaitForCompletion is only called by the main program thread and +// needs no locking +extern SstStatusValue SstWaitForCompletion(SstStream Stream, void *handle) +{ + if (Stream->ConfigParams->ReaderShortCircuitReads) + return SstSuccess; + if (Stream->DP_Interface->waitForCompletion(&Svcs, handle) != 1) + { + return SstFatalError; + } + else + { + return SstSuccess; + } +} diff --git a/source/h5vol/H5VolReadWrite.h b/source/h5vol/H5VolReadWrite.h index a07f3ffe42..2910ae0d87 100644 --- a/source/h5vol/H5VolReadWrite.h +++ b/source/h5vol/H5VolReadWrite.h @@ -1,151 +1,151 @@ -#ifndef ADIOS_VOL_WRITER_H -#define ADIOS_VOL_WRITER_H - -#define H5F_FRIEND /*suppress error about including H5Fpkg */ - -#include "H5VolError.h" -#include "H5VolUtil.h" -#include -#include -#include -#include - -#include - -#include "H5Vol_def.h" - -// -// VL definition -// -static herr_t H5VL_adios2_init(hid_t vipl_id) { return 0; } - -static herr_t H5VL_adios2_term(void) -{ - gExitADIOS2(); - return 0; -} - -extern herr_t H5VL_adios2_begin_read_step(const char *); -extern herr_t H5VL_adios2_begin_write_step(const char *); - -extern herr_t H5VL_adios2_beginstep(const char *engine_name, - adios2_step_mode m); - -extern herr_t H5VL_adios2_endstep(const char *engine_nane); - -static herr_t H5VL_adios2_introspect_opt_query(void *obj, H5VL_subclass_t cls, - int opt_type, - uint64_t *supported) -{ - *supported = 0; - return 0; -} - -static herr_t H5VL_adios2_datatype_close(void *dt, hid_t H5_ATTR_UNUSED dxpl_id, - void H5_ATTR_UNUSED **req) -{ - return 0; -} - -// -// Define H5VOL functions -// -static const H5VL_class_t H5VL_adios2_def = { - H5VL_VERSION, /* Version # of connector, needed for v1.13 */ - (H5VL_class_value_t)H5VL_ADIOS2_VALUE, - H5VL_ADIOS2_NAME, /* name */ - H5VL_ADIOS2_VERSION, /* version of this vol, not as important */ - H5VL_CAP_FLAG_NONE, /* Capability flags for connector */ - H5VL_adios2_init, /* initialize */ - H5VL_adios2_term, /* terminate */ - { - /* info_cls */ - (size_t)0, /* info size */ - NULL, /* info copy */ - NULL, /* info compare */ - NULL, /* info free */ - NULL, /* info to str */ - NULL /* str to info */ - }, - { - NULL, /* get_object */ - NULL, /* get_wrap_ctx */ - NULL, /* wrap_object */ - NULL, /* unwrap_object */ - NULL /* free_wrap_ctx */ - }, - {H5VL_adios2_attr_create, H5VL_adios2_attr_open, H5VL_adios2_attr_read, - H5VL_adios2_attr_write, H5VL_adios2_attr_get, H5VL_adios2_attr_specific, - NULL, // H5VL_adios2_attr_optional, - H5VL_adios2_attr_close}, - { - /* dataset_cls */ - H5VL_adios2_dataset_create, H5VL_adios2_dataset_open, - H5VL_adios2_dataset_read, H5VL_adios2_dataset_write, - H5VL_adios2_dataset_get, /* get properties*/ - NULL, // H5VL_adios2_dataset_specific - NULL, // optional - H5VL_adios2_dataset_close /* close */ - }, - { - /* datatype_cls */ - NULL, // H5VL_adios2_datatype_commit, /* commit */ - NULL, // H5VL_adios2_datatype_open, /* open */ - NULL, // H5VL_adios2_datatype_get, /* get_size */ - NULL, // H5VL_adios2_datatype_specific, - NULL, // H5VL_adios2_datatype_optional, - H5VL_adios2_datatype_close /* close */ - }, - {H5VL_adios2_file_create, H5VL_adios2_file_open, - NULL, // H5VL_adios2_file_get, - H5VL_adios2_file_specific, - NULL, // H5VL_adios2_file_optional, - H5VL_adios2_file_close}, - {H5VL_adios2_group_create, H5VL_adios2_group_open, H5VL_adios2_group_get, - NULL, NULL, H5VL_adios2_group_close}, - { - NULL, // H5VL_adios2_link_create, - NULL, // H5VL_adios2_link_copy, - NULL, // H5VL_adios2_link_move, - H5VL_adios2_link_get, H5VL_adios2_link_specific, - NULL // H5VL_adios2_link_remove - }, - { - H5VL_adios2_object_open, - NULL, // H5VL_adios2_object_copy, - H5VL_adios2_object_get, - NULL, // H5VL_adios2_object_specific, - NULL // H5VL_adios2_object_optional, - }, - { - /* introspect_cls */ - NULL, // H5VL_pass_through_introspect_get_conn_cls, /* get_conn_cls */ - NULL, /* get_cap_flags */ - H5VL_adios2_introspect_opt_query, /* opt_query */ - }, - { - /* request_cls */ - NULL, /* wait */ - NULL, /* notify */ - NULL, /* cancel */ - NULL, /* specific */ - NULL, /* optional */ - NULL /* free */ - }, - { - /* blob_cls */ - NULL, /* put */ - NULL, /* get */ - NULL, /* specific */ - NULL /* optional */ - }, - { - /* token_cls */ - NULL, /* cmp */ - NULL, /* to_str */ - NULL /* from_str */ - }, - NULL /*/optional*/ -}; - -#endif // ADIOS_VOL_WRITER_H +#ifndef ADIOS_VOL_WRITER_H +#define ADIOS_VOL_WRITER_H + +#define H5F_FRIEND /*suppress error about including H5Fpkg */ + +#include "H5VolError.h" +#include "H5VolUtil.h" +#include +#include +#include +#include + +#include + +#include "H5Vol_def.h" + +// +// VL definition +// +static herr_t H5VL_adios2_init(hid_t vipl_id) { return 0; } + +static herr_t H5VL_adios2_term(void) +{ + gExitADIOS2(); + return 0; +} + +extern herr_t H5VL_adios2_begin_read_step(const char *); +extern herr_t H5VL_adios2_begin_write_step(const char *); + +extern herr_t H5VL_adios2_beginstep(const char *engine_name, + adios2_step_mode m); + +extern herr_t H5VL_adios2_endstep(const char *engine_nane); + +static herr_t H5VL_adios2_introspect_opt_query(void *obj, H5VL_subclass_t cls, + int opt_type, + uint64_t *supported) +{ + *supported = 0; + return 0; +} + +static herr_t H5VL_adios2_datatype_close(void *dt, hid_t H5_ATTR_UNUSED dxpl_id, + void H5_ATTR_UNUSED **req) +{ + return 0; +} + +// +// Define H5VOL functions +// +static const H5VL_class_t H5VL_adios2_def = { + H5VL_VERSION, /* Version # of connector, needed for v1.13 */ + (H5VL_class_value_t)H5VL_ADIOS2_VALUE, + H5VL_ADIOS2_NAME, /* name */ + H5VL_ADIOS2_VERSION, /* version of this vol, not as important */ + H5VL_CAP_FLAG_NONE, /* Capability flags for connector */ + H5VL_adios2_init, /* initialize */ + H5VL_adios2_term, /* terminate */ + { + /* info_cls */ + (size_t)0, /* info size */ + NULL, /* info copy */ + NULL, /* info compare */ + NULL, /* info free */ + NULL, /* info to str */ + NULL /* str to info */ + }, + { + NULL, /* get_object */ + NULL, /* get_wrap_ctx */ + NULL, /* wrap_object */ + NULL, /* unwrap_object */ + NULL /* free_wrap_ctx */ + }, + {H5VL_adios2_attr_create, H5VL_adios2_attr_open, H5VL_adios2_attr_read, + H5VL_adios2_attr_write, H5VL_adios2_attr_get, H5VL_adios2_attr_specific, + NULL, // H5VL_adios2_attr_optional, + H5VL_adios2_attr_close}, + { + /* dataset_cls */ + H5VL_adios2_dataset_create, H5VL_adios2_dataset_open, + H5VL_adios2_dataset_read, H5VL_adios2_dataset_write, + H5VL_adios2_dataset_get, /* get properties*/ + NULL, // H5VL_adios2_dataset_specific + NULL, // optional + H5VL_adios2_dataset_close /* close */ + }, + { + /* datatype_cls */ + NULL, // H5VL_adios2_datatype_commit, /* commit */ + NULL, // H5VL_adios2_datatype_open, /* open */ + NULL, // H5VL_adios2_datatype_get, /* get_size */ + NULL, // H5VL_adios2_datatype_specific, + NULL, // H5VL_adios2_datatype_optional, + H5VL_adios2_datatype_close /* close */ + }, + {H5VL_adios2_file_create, H5VL_adios2_file_open, + NULL, // H5VL_adios2_file_get, + H5VL_adios2_file_specific, + NULL, // H5VL_adios2_file_optional, + H5VL_adios2_file_close}, + {H5VL_adios2_group_create, H5VL_adios2_group_open, H5VL_adios2_group_get, + NULL, NULL, H5VL_adios2_group_close}, + { + NULL, // H5VL_adios2_link_create, + NULL, // H5VL_adios2_link_copy, + NULL, // H5VL_adios2_link_move, + H5VL_adios2_link_get, H5VL_adios2_link_specific, + NULL // H5VL_adios2_link_remove + }, + { + H5VL_adios2_object_open, + NULL, // H5VL_adios2_object_copy, + H5VL_adios2_object_get, + NULL, // H5VL_adios2_object_specific, + NULL // H5VL_adios2_object_optional, + }, + { + /* introspect_cls */ + NULL, // H5VL_pass_through_introspect_get_conn_cls, /* get_conn_cls */ + NULL, /* get_cap_flags */ + H5VL_adios2_introspect_opt_query, /* opt_query */ + }, + { + /* request_cls */ + NULL, /* wait */ + NULL, /* notify */ + NULL, /* cancel */ + NULL, /* specific */ + NULL, /* optional */ + NULL /* free */ + }, + { + /* blob_cls */ + NULL, /* put */ + NULL, /* get */ + NULL, /* specific */ + NULL /* optional */ + }, + { + /* token_cls */ + NULL, /* cmp */ + NULL, /* to_str */ + NULL /* from_str */ + }, + NULL /*/optional*/ +}; + +#endif // ADIOS_VOL_WRITER_H From 0f2bdf5ba322abe0218369b77a201adc520cedec Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Tue, 4 Jul 2023 16:04:54 -0400 Subject: [PATCH 062/183] Merge pull request #3687 from dmitry-ganyushin/i3646-mult-macos Fix for the issue #3646. (cherry picked from commit c8c5238d1f218430b4a04f679e3f85b3a420fb26) --- testing/adios2/engine/dataman/TestDataMan1D.py | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/testing/adios2/engine/dataman/TestDataMan1D.py b/testing/adios2/engine/dataman/TestDataMan1D.py index 8b8aac928f..016b496fa8 100644 --- a/testing/adios2/engine/dataman/TestDataMan1D.py +++ b/testing/adios2/engine/dataman/TestDataMan1D.py @@ -6,7 +6,7 @@ # TestDataMan1D.py: test for 1D data transfer by reading in Python # Created on: March 3, 2023 # Author: Dmitry Ganyushin ganyushindi@ornl.gov -from multiprocessing import Process +import multiprocessing import unittest import numpy as np import adios2 @@ -28,8 +28,8 @@ def setUp(self): def test_run(self): - s = Process(target=self.thread_send) - r = Process(target=self.thread_receive) + s = multiprocessing.Process(target=self.thread_send) + r = multiprocessing.Process(target=self.thread_receive) s.start() r.start() @@ -88,4 +88,5 @@ def thread_receive(self): if __name__ == '__main__': + multiprocessing.set_start_method("fork") unittest.main() From d9bd750928c4cbebcf4fcc93b842941701820671 Mon Sep 17 00:00:00 2001 From: Vicente Bolea Date: Tue, 25 Jul 2023 18:37:07 -0400 Subject: [PATCH 063/183] Merge pull request #3712 from ornladios/dependabot/pip/docs/certifi-2023.7.22 build(deps): bump certifi from 2022.12.7 to 2023.7.22 in /docs (cherry picked from commit cdd58fb90cd557ffd770fa765acf1e638c20c483) --- docs/requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/requirements.txt b/docs/requirements.txt index ab7566389f..dcb79d7d98 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -3,7 +3,7 @@ Babel==2.11.0 blockdiag==3.0.0 breathe==4.33.0 brotlipy==0.7.0 -certifi==2022.12.7 +certifi==2023.7.22 cffi==1.15.1 charset-normalizer==2.1.1 colorama==0.4.6 From 390b7625d665fa0fea4a02f1a323a8197a311a89 Mon Sep 17 00:00:00 2001 From: Vicente Bolea Date: Thu, 20 Jul 2023 12:23:29 -0400 Subject: [PATCH 064/183] Merge pull request #3704 from ornladios/dependabot/pip/docs/pygments-2.15.0 build(deps): bump pygments from 2.14.0 to 2.15.0 in /docs (cherry picked from commit 9ba52c14f57cb42223ff39da2cbb74e4319c5608) --- docs/requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/requirements.txt b/docs/requirements.txt index dcb79d7d98..933b2e177a 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -21,7 +21,7 @@ packaging==22.0 Pillow==9.4.0 pip==22.3.1 pycparser==2.21 -Pygments==2.14.0 +Pygments==2.15.0 pyOpenSSL==23.0.0 PySocks==1.7.1 pytz==2022.7 From 916cdf93fca19c1df5551a2505dd5acaf35c1083 Mon Sep 17 00:00:00 2001 From: Vicente Bolea Date: Mon, 17 Jul 2023 21:51:40 -0400 Subject: [PATCH 065/183] Merge pull request #3698 from vicentebolea/add-gitattribute-file added gitattributes file (cherry picked from commit 771f5ae997459a4d73098cfebb3779c298b70182) --- .gitattributes | 22 + source/h5vol/H5VolReadWrite.c | 2260 ++++++++++++++++----------------- 2 files changed, 1152 insertions(+), 1130 deletions(-) create mode 100644 .gitattributes diff --git a/.gitattributes b/.gitattributes new file mode 100644 index 0000000000..e59188800a --- /dev/null +++ b/.gitattributes @@ -0,0 +1,22 @@ +# Set the default behavior, in case people don't have core.autocrlf set. +* text=auto + +# Explicitly declare text files you want to always be normalized and converted +# to native line endings on checkout. +*.cxx text +*.h text +*.hxx text +*.tcc text +*.cu text +*.c text +*.h text +*.py text +*.f90 text +*.F90 text +*.sh text + +*.cmake whitespace=tab-in-indent +*.md whitespace=tab-in-indent whitespace=-blank-at-eol conflict-marker-size=79 +*.rst whitespace=tab-in-indent conflict-marker-size=79 +*.txt whitespace=tab-in-indent +*.xml whitespace=tab-in-indent diff --git a/source/h5vol/H5VolReadWrite.c b/source/h5vol/H5VolReadWrite.c index 5633eaf03d..aedb836e05 100644 --- a/source/h5vol/H5VolReadWrite.c +++ b/source/h5vol/H5VolReadWrite.c @@ -1,1130 +1,1130 @@ -#include "H5VLpublic.h" -#include "hdf5.h" -#define H5S_FRIEND // suppress error for H5Spkg -#define H5O_FRIEND // suppress error for H5Opkg - -#include -#include -#include -#include - -#if ADIOS2_USE_MPI -#include -#endif - -#include "H5Epublic.h" -#include "H5VolReadWrite.h" - -#include "H5VolUtil.h" - -#ifdef HAVE_UNISTD_H -#include // sleep -#elif defined HAVE_WINDOWS_H -#include -#define sleep(x) Sleep(1000 * (x)) -#endif - -// these are in h5private.h -#define SUCCEED 1 -#define FAIL 0 - -static hid_t H5VL_ADIOS_g = -1; - -static adios2_adios *m_ADIOS2 = NULL; -// static adios2_io *m_IO = NULL; -static int m_MPIRank = 0; - -#define RANK_ZERO_MSG(...) \ - { \ - if (0 == m_MPIRank) \ - { \ - fprintf(stderr, "## VOL info:"); \ - fprintf(stderr, __VA_ARGS__); \ - fflush(stderr); \ - } \ - } - -void gGenerateFullPath(char *fullPath, const char *parentPath, const char *name) -{ - size_t ps = strlen(parentPath); - size_t ns = strlen(name); - size_t length = ps; - bool startsWithDotSlash = - ((ns > 1) && ('/' == name[1]) && ('.' == name[0])); - - if ('/' == parentPath[ps - 1]) - { - if (startsWithDotSlash) - { - sprintf(fullPath, "%s%s", parentPath, name + 2); - length += ns - 2; - } - else - { - sprintf(fullPath, "%s%s", parentPath, name); - length += ns; - } - } - else - { - if (startsWithDotSlash) - { - sprintf(fullPath, "%s/%s", parentPath, name + 2); - length += 1 + ns - 2; - } - else - { - sprintf(fullPath, "%s/%s", parentPath, name); - length += 1 + ns; - } - } - fullPath[length] = '\0'; -} - -herr_t H5VL_adios2_begin_read_step(const char *filename) -{ - return H5VL_adios2_beginstep(filename, adios2_step_mode_read); -} - -herr_t H5VL_adios2_begin_write_step(const char *filename) -{ - return H5VL_adios2_beginstep(filename, adios2_step_mode_append); -} - -herr_t H5VL_adios2_beginstep(const char *filename, adios2_step_mode m) -{ - adios2_io *m_IO = adios2_at_io(m_ADIOS2, filename); - adios2_engine *currEngine = adios2_get_engine(m_IO, filename); - if (NULL == currEngine) - return -1; - - adios2_step_status status; - adios2_begin_step(currEngine, m, 0.0, &status); - - if (adios2_step_status_end_of_stream == status) - { - RANK_ZERO_MSG("..end_of_stream \n"); - return -1; - } - else if (adios2_step_status_not_ready == status) - { - RANK_ZERO_MSG(".. not ready \n"); - while (adios2_step_status_not_ready == status) - { - sleep(1); - adios2_begin_step(currEngine, m, 0.0, &status); - } - RANK_ZERO_MSG("... other status \n"); - if (adios2_step_status_ok == status) - { - return 0; - } - return -1; - } - else if (adios2_step_status_ok == status) - { - RANK_ZERO_MSG(".. stream ready \n"); - return 0; - } - return -1; -} - -herr_t H5VL_adios2_endstep(const char *filename) -{ - adios2_io *m_IO = adios2_at_io(m_ADIOS2, filename); - adios2_engine *engine = adios2_get_engine(m_IO, filename); - if (NULL == engine) - return -1; - - adios2_end_step(engine); - return 0; -} - -void gInitADIOS2(hid_t acc_tpl) -{ - if (NULL != m_ADIOS2) - return; - -#if ADIOS2_USE_MPI - int flag = 0; - MPI_Initialized(&flag); - if (!flag) - { - RANK_ZERO_MSG("H5VL_ADIOS2 WARNING: MPI is not initialized, will use " - "Serial ADIOS\n"); - m_ADIOS2 = adios2_init_serial(); - } - else - { - MPI_Comm comm = MPI_COMM_WORLD; - if (H5Pget_driver(acc_tpl) == H5FD_MPIO) - { - MPI_Info info; - H5Pget_fapl_mpio(acc_tpl, &comm, &info); - // int rank; - } - MPI_Comm_rank(comm, &m_MPIRank); - m_ADIOS2 = adios2_init_mpi(comm); - } -#else - m_ADIOS2 = adios2_init_serial(); -#endif - REQUIRE_NOT_NULL(m_ADIOS2); -} - -void gExitADIOS2() -{ - if (NULL == m_ADIOS2) - return; - adios2_remove_all_ios(m_ADIOS2); - adios2_finalize(m_ADIOS2); - m_ADIOS2 = NULL; -} - -void loadPath(H5VL_ObjDef_t *result, const char *name, H5VL_ObjDef_t *parent) -{ - if (NULL == parent->m_Path) - { - result->m_Path = (char *)(SAFE_CALLOC(strlen(name) + 1, sizeof(char))); - strcpy(result->m_Path, name); - result->m_Path[strlen(name)] = '\0'; - } - else if ((strlen(parent->m_Path) == 1) && (parent->m_Path[0] == '/')) - { - result->m_Path = (char *)(SAFE_CALLOC(strlen(name) + 2, sizeof(char))); - sprintf(result->m_Path, "%s%s", parent->m_Path, name); - result->m_Path[strlen(name) + 1] = '\0'; - } - else - { - size_t size = strlen(name) + strlen(parent->m_Path) + 1; - if (parent->m_Path[strlen(parent->m_Path) - 1] == '/') - { - size = size - 1; - result->m_Path = (char *)(SAFE_CALLOC(size + 1, sizeof(char))); - sprintf(result->m_Path, "%s%s", parent->m_Path, name); - } - else - { - result->m_Path = (char *)(SAFE_CALLOC(size + 1, sizeof(char))); - sprintf(result->m_Path, "%s/%s", parent->m_Path, name); - } - // result->m_Path= - // (char*)(SAFE_CALLOC(strlen(name)+4+strlen(parent->m_Path), - // sizeof(char))); - result->m_Path[size] = '\0'; - } -} - -H5VL_ObjDef_t *initVolObj(H5VL_ObjDef_t *parent) -{ - H5VL_ObjDef_t *result = - (H5VL_ObjDef_t *)SAFE_CALLOC(1, sizeof(H5VL_ObjDef_t)); - result->m_Parent = parent; - - result->m_ObjPtr = NULL; - result->m_Path = NULL; - result->m_SubGroupNames = NULL; - - result->m_NumAttrs = 0; - result->m_NumVars = 0; - result->m_NumSubGroups = 0; - - result->m_Vars = NULL; - result->m_Attrs = NULL; - - if (NULL == parent) - result->m_FileIO = NULL; - else - result->m_FileIO = parent->m_FileIO; - - return result; -} - -void gFreeVol(H5VL_ObjDef_t *vol) -{ - if (NULL == vol) - return; - - if (NULL != vol->m_Vars) - { - SAFE_FREE(vol->m_Vars); - } - - if (NULL != vol->m_Attrs) - { - SAFE_FREE(vol->m_Attrs); - } - - if (NULL != vol->m_SubGroupNames) - { - int i; - for (i = 0; i < vol->m_NumSubGroups; i++) - SAFE_FREE(vol->m_SubGroupNames[i]); - - SAFE_FREE(vol->m_SubGroupNames); - } - - SAFE_FREE(vol->m_Path); - SAFE_FREE(vol); - vol = NULL; -} - -void *gAttrToVolObj(H5VL_AttrDef_t *attr, H5VL_ObjDef_t *parent) -{ - H5VL_ObjDef_t *result = initVolObj(parent); - - result->m_ObjType = ATTR; - result->m_ObjPtr = attr; - - loadPath(result, attr->m_Name, parent); - return result; -} - -void *gGroupToVolObj(H5VL_GroupDef_t *group, H5VL_ObjDef_t *parent) -{ - H5VL_ObjDef_t *result = initVolObj(parent); - result->m_ObjType = GROUP; - result->m_ObjPtr = group; - - loadPath(result, group->m_Name, parent); - - return result; -} - -void *gVarToVolObj(H5VL_VarDef_t *var, H5VL_ObjDef_t *parent) -{ - H5VL_ObjDef_t *result = initVolObj(parent); - result->m_ObjType = VAR; - result->m_ObjPtr = var; - - loadPath(result, var->m_Name, parent); - return result; -} - -void *gFileToVolObj(H5VL_FileDef_t *f) -{ - H5VL_ObjDef_t *result = initVolObj(NULL); - result->m_ObjType = ROOT; - result->m_ObjPtr = f; - - result->m_FileIO = f->m_IO; - return result; -} - -adios2_attribute *gLocateAttrFrom(H5VL_ObjDef_t *owner, const char *attrName) -{ - if (NULL == owner) - return NULL; - - if (ROOT == owner->m_ObjType) - return adios2_inquire_attribute(owner->m_FileIO, attrName); - - if ((GROUP == owner->m_ObjType) || (VAR == owner->m_ObjType)) - { - size_t ss = strlen(owner->m_Path); - if ('/' == (owner->m_Path)[ss - 1]) - { - char fullPath[strlen(owner->m_Path) + 4 + strlen(attrName)]; - sprintf(fullPath, "%s%s", owner->m_Path, attrName); - return adios2_inquire_attribute(owner->m_FileIO, fullPath); - } - else - { - char fullPath[strlen(owner->m_Path) + 4 + strlen(attrName)]; - sprintf(fullPath, "%s/%s", owner->m_Path, attrName); - return adios2_inquire_attribute(owner->m_FileIO, fullPath); - } - } - return NULL; -} - -// -// returns 0 is obj_name is not under owner -// returns 1 is obj_name is under owner -// -htri_t gExistsUnderGrp(H5VL_ObjDef_t *owner, const char *obj_name) -{ - if (NULL == owner) - return 0; - - if (ROOT == owner->m_ObjType) - { - if (NULL != adios2_inquire_attribute(owner->m_FileIO, obj_name)) - return 1; - if (NULL != adios2_inquire_variable(owner->m_FileIO, obj_name)) - return 1; - return 0; - } - - if (GROUP != owner->m_ObjType) - return 0; - - char fullPath[strlen(owner->m_Path) + 4 + strlen(obj_name)]; - sprintf(fullPath, "%s/%s", owner->m_Path, obj_name); - - if (NULL != adios2_inquire_attribute(owner->m_FileIO, fullPath)) - return 1; - - if (NULL != adios2_inquire_variable(owner->m_FileIO, fullPath)) - return 1; - - return 0; -} - -// -// return: -// if obj_name is found and deleted. -// otherwise -// -bool gRemoveUnderGrp(H5VL_ObjDef_t *owner, const char *obj_name) -{ - if (NULL == owner) - return 0; - - adios2_bool result; - - if (ROOT == owner->m_ObjType) - { - if (adios2_error_none == - adios2_remove_attribute(&result, owner->m_FileIO, obj_name)) - if (adios2_true == result) - return true; - if (adios2_error_none == - adios2_remove_variable(&result, owner->m_FileIO, obj_name)) - if (adios2_true == result) - return true; - return false; - } - - if (GROUP != owner->m_ObjType) - return false; - - char fullPath[strlen(owner->m_Path) + 4 + strlen(obj_name)]; - gGenerateFullPath(fullPath, owner->m_Path, obj_name); - // sprintf(fullPath, "%s/%s", owner->m_Path, obj_name); - - if (adios2_error_none == - adios2_remove_attribute(&result, owner->m_FileIO, fullPath)) - if (adios2_true == result) - return true; - if (adios2_error_none == - adios2_remove_variable(&result, owner->m_FileIO, fullPath)) - if (adios2_true == result) - return true; - -#ifdef NEVER - return false; -#else - printf("\n......... NOTE: unable to remove GROUP %s \n\n", fullPath); - return true; -#endif -} - -void gLoadAttrDef(H5VL_AttrDef_t *attrDef) -{ - adios2_attribute *attr = attrDef->m_Attribute; - if (NULL == attr) - return; - - adios2_bool boolVal; - adios2_attribute_is_value(&boolVal, attr); - if (adios2_true == boolVal) - { - attrDef->m_SpaceID = H5Screate(H5S_SCALAR); - attrDef->m_Size = 1; - } - else - { - attrDef->m_IsScalar = false; - adios2_attribute_size(&(attrDef->m_Size), attr); - attrDef->m_SpaceID = H5Screate(H5S_SIMPLE); - // NOTE: adios only supports 1 dimension - hsize_t ss = (hsize_t)(attrDef->m_Size); - H5Sset_extent_simple(attrDef->m_SpaceID, 1, &ss, NULL); - } - - adios2_type adiosType; - adios2_attribute_type(&adiosType, attr); - attrDef->m_TypeID = gUtilHDF5Type(adiosType); - - /* - if (adios2_type_string == adiosType) { - char typeNameStr[30]; - size_t typeNameSize; - adios2_attribute_type_string (typeNameStr, &typeNameSize, attr); - // need a way to get actual string value size, not type sie - //printf(" string type= %s, name=%s, size= %lu\n", attrDef->m_Name, - typeNameStr, typeNameSize); - } - */ -} - -H5VL_ObjDef_t *gGetVarObjDef(const char *name, H5VL_ObjDef_t *vol) -{ - if (vol->m_ObjType == ROOT) - { // no vol->m_Path - if ((strlen(name) == 1) && (name[0] == '/')) - { - // root group, not var - return NULL; - } - H5VL_FileDef_t *handle = (H5VL_FileDef_t *)(vol->m_ObjPtr); - adios2_variable *var = gADIOS2InqVar(vol->m_FileIO, name); - if (NULL == var) - { - if (name[strlen(name) - 1] != '/') - { - SHOW_ERROR_MSG( - "H5VL_ADIOS2: Error: No such variable: %s in file\n ", - name); - return NULL; - } - - char *n = (char *)(SAFE_CALLOC(strlen(name) + 1, sizeof(char))); - strcpy(n, name); - n[strlen(name) - 1] = '\0'; - var = gADIOS2InqVar(vol->m_FileIO, n); - SAFE_FREE(n); - if (NULL == var) - { - return NULL; - } - } - H5VL_VarDef_t *varDef = - gCreateVarDef(name, handle->m_Engine, var, -1, -1); - return gVarToVolObj(varDef, vol); - } - - char fullPath[strlen(vol->m_Path) + 4 + strlen(name)]; - gGenerateFullPath(fullPath, vol->m_Path, name); - - if ('/' == name[strlen(name) - 1]) - { - fullPath[strlen(fullPath) - 1] = '\0'; - } - - adios2_variable *var = gADIOS2InqVar(vol->m_FileIO, fullPath); - if (NULL == var) - { - SHOW_ERROR_MSG("H5VL_ADIOS2: Error: No such variable:: %s in file\n ", - fullPath); - return NULL; - } - - H5VL_ObjDef_t *curr = vol; - while (curr) - { - if (curr->m_Parent == NULL) - { - H5VL_VarDef_t *varDef = gCreateVarDef( - fullPath, ((H5VL_FileDef_t *)(curr->m_ObjPtr))->m_Engine, var, - -1, -1); - - return gVarToVolObj(varDef, vol); - } - else - { - curr = curr->m_Parent; - } - } - - return NULL; -} - -H5VL_AttrDef_t *gCreateAttrDef(const char *name, hid_t type_id, hid_t space_id) -{ - H5VL_AttrDef_t *attrDef = - (H5VL_AttrDef_t *)SAFE_CALLOC(1, sizeof(H5VL_AttrDef_t)); - attrDef->m_Attribute = NULL; - attrDef->m_Size = 0; - - attrDef->m_Name = (char *)SAFE_CALLOC(strlen(name) + 1, sizeof(char)); - sprintf(attrDef->m_Name, "%s", name); - attrDef->m_Name[strlen(name)] = '\0'; - - attrDef->m_TypeID = type_id; - - attrDef->m_IsScalar = true; - - if (space_id != -1) // most likely from H5Dcreate - attrDef->m_SpaceID = H5Scopy(space_id); - else - attrDef->m_SpaceID = -1; - - return attrDef; -} - -H5VL_VarDef_t *gCreateVarDef(const char *name, adios2_engine *engine, - adios2_variable *var, hid_t space_id, - hid_t type_id) -{ - if ((-1 == type_id) && (NULL == var)) - { - printf("UNABLE to create var with unknown var _and_ unknown type"); - return NULL; - } - H5VL_VarDef_t *varDef = - (H5VL_VarDef_t *)SAFE_CALLOC(1, sizeof(H5VL_VarDef_t)); - varDef->m_Name = (char *)SAFE_CALLOC(strlen(name) + 1, sizeof(char)); - sprintf(varDef->m_Name, "%s", name); - - varDef->m_Engine = engine; - varDef->m_Variable = var; - varDef->m_DimCount = (size_t)-1; // default: unknown - varDef->m_TypeID = -1; // default: unknown - varDef->m_Data = NULL; - - if (space_id != -1) // most likely from H5Dcreate - { - varDef->m_ShapeID = H5Scopy(space_id); - varDef->m_DimCount = H5Sget_simple_extent_ndims(space_id); - } - else - { // likely from H5Dopen, so get space info from adios var: - REQUIRE_NOT_NULL_ERR(var, NULL); - size_t nDims; - if (adios2_error_none != adios2_variable_ndims(&nDims, var)) - { - SAFE_FREE(varDef); - return NULL; - } - - varDef->m_DimCount = nDims; - - size_t shape[nDims]; - if (adios2_error_none != adios2_variable_shape(shape, var)) - { - SAFE_FREE(varDef); - return NULL; - } - - hid_t filespace = H5Screate_simple(nDims, (hsize_t *)shape, NULL); - varDef->m_ShapeID = filespace; - } - - if (type_id != -1) - varDef->m_TypeID = type_id; - else - { - adios2_type adiosType; - adios2_variable_type(&adiosType, var); - varDef->m_TypeID = gUtilHDF5Type(adiosType); - - /* - if (adios2_type_string == adiosType) { - char typeNameStr[30]; - size_t typeNameSize; - adios2_variable_type_string (typeNameStr, &typeNameSize, var); - printf(" var type= %s\n", typeNameStr); - } - */ - } - - return varDef; -} - -H5VL_GroupDef_t *gCreateGroupDef(const char *name) -{ - H5VL_GroupDef_t *grp = - (H5VL_GroupDef_t *)SAFE_CALLOC(1, sizeof(H5VL_GroupDef_t)); - - grp->m_Name = (char *)SAFE_CALLOC(strlen(name) + 1, sizeof(char)); - sprintf(grp->m_Name, "%s", name); - - return grp; -} - -size_t gGetBranchNameLength(H5VL_ObjDef_t *vol, size_t namelen) -{ - if (vol->m_Path != NULL) - if ('/' == (vol->m_Path)[strlen(vol->m_Path) - 1]) - return namelen - strlen(vol->m_Path); // minus parent path - else - return namelen - strlen(vol->m_Path) - - 1; // minus parent path & seperator - else - return namelen; -} - -void gGetBranchName(H5VL_ObjDef_t *vol, const char *fullPath, char *name) -{ - size_t namelen = strlen(fullPath); - - if ('/' == (vol->m_Path)[strlen(vol->m_Path) - 1]) - // minus parent path & seperator - strncpy(name, fullPath + strlen(vol->m_Path), - namelen - strlen(vol->m_Path)); - else - strncpy(name, fullPath + strlen(vol->m_Path) + 1, - namelen - strlen(vol->m_Path) - 1); -} - -// -// returns length of name -// -size_t gGetNameOfNthAttr(H5VL_ObjDef_t *vol, uint32_t idx, char *name) -{ - gLoadContent(vol); - if (0 == vol->m_NumAttrs) - return 0; - - if (idx >= vol->m_NumAttrs) - return 0; - - adios2_attribute *curr = (vol->m_Attrs)[idx]; - - size_t namelen; - adios2_attribute_name(NULL, &namelen, curr); - - if ((NULL != name) && (NULL == vol->m_Path)) - adios2_attribute_name(name, &namelen, curr); - else if (NULL != name) - { - char fullPath[namelen + 1]; - adios2_attribute_name(fullPath, &namelen, curr); - fullPath[namelen] = '\0'; - - gGetBranchName(vol, fullPath, name); - // printf(".... [%s] vs [%s]\n", fullPath, name); - } - - return gGetBranchNameLength(vol, namelen); -} - -// -// returns length of name -// of either dataset or subgroup -// called from: H5Gget_info, then H5Gget_objname_by_idx -// (which calls H5Lget_name.. ) -// -size_t gGetNameOfNthItem(H5VL_ObjDef_t *vol, uint32_t idx, char *name) -{ - gLoadContent(vol); - - /* - if (idx < vol->m_NumAttrs) - return gGetNameOfNthAttr(vol, idx, name); - - uint32_t vIdx = idx - vol->m_NumAttrs; - if (vIdx < vol->m_NumVars) - */ - if (idx < vol->m_NumVars) - { - adios2_variable *curr = (vol->m_Vars)[idx]; - - size_t namelen; - adios2_variable_name(NULL, &namelen, curr); - - if ((NULL != name) && (NULL == vol->m_Path)) - adios2_variable_name(name, &namelen, curr); - else if (NULL != name) - { - char fullPath[namelen + 1]; - adios2_variable_name(fullPath, &namelen, curr); - fullPath[namelen] = '\0'; - - gGetBranchName(vol, fullPath, name); - // printf(".... [%s] vs [%s]\n", fullPath, name); - } - return gGetBranchNameLength(vol, namelen); - } - - // now try subgroups - if (0 == vol->m_NumSubGroups) - return 0; - - uint32_t vIdx = idx - vol->m_NumVars; - if (vIdx >= vol->m_NumSubGroups) - return 0; - - char *n = vol->m_SubGroupNames[vIdx]; - if (NULL != name) - { - sprintf(name, "%s", n); - } - return strlen(n); -} - -// -// load attributes and vars that belongs to this obj -// -void gLoadContent(H5VL_ObjDef_t *obj) -{ - if (0 < (obj->m_NumVars + obj->m_NumAttrs)) - return; - - size_t nvars, nattrs; - { - if ((ROOT == obj->m_ObjType) || (GROUP == obj->m_ObjType)) - { - adios2_variable **adios_vars; - adios2_inquire_group_variables(&adios_vars, obj->m_Path, &nvars, - obj->m_FileIO); - - obj->m_NumVars = nvars; - if (nvars > 0) - obj->m_Vars = adios_vars; - } - } - - { - if (ATTR != obj->m_ObjType) - { - adios2_attribute **adios_attrs; - adios2_inquire_group_attributes(&adios_attrs, obj->m_Path, &nattrs, - obj->m_FileIO); - - obj->m_NumAttrs = nattrs; - if (nattrs > 0) - obj->m_Attrs = adios_attrs; - } - } -} - -// -// -void gLoadSubGroups(H5VL_ObjDef_t *obj) -{ - // NOTE: subgroups will be supported when ADIOS supports hierarchy properly - if ((ROOT == obj->m_ObjType) || (GROUP == obj->m_ObjType)) - { - if (obj->m_NumSubGroups > 0) - return; - - adios2_inquire_subgroups(&(obj->m_SubGroupNames), obj->m_Path, - &(obj->m_NumSubGroups), obj->m_FileIO); - return; - } -} - -void gChooseEngine(adios2_io *io) -{ - const char *engineType = getenv("ADIOS2_ENGINE"); - - if (engineType != NULL) - { - if (0 == m_MPIRank) - printf(" ADIOS2 will apply engine: %s\n", engineType); - adios2_set_engine(io, engineType); - } - else - { - adios2_set_engine(io, "BP4"); - } -} - -H5VL_FileDef_t *gADIOS2CreateFile(const char *name) -{ - H5VL_FileDef_t *handle = NULL; - handle = (H5VL_FileDef_t *)SAFE_CALLOC(1, sizeof(H5VL_FileDef_t)); - - // if (0 == m_MPIRank) - // printf("===========> creating: file:%s\n", name); - - handle->m_IO = adios2_declare_io(m_ADIOS2, name); - - if (NULL == handle->m_IO) - handle->m_IO = adios2_at_io(m_ADIOS2, name); - - if (NULL == handle->m_IO) - { - SAFE_FREE(handle); - return NULL; - } - - adios2_set_parameter(handle->m_IO, "Profile", "Off"); - gChooseEngine(handle->m_IO); - handle->m_Engine = adios2_open(handle->m_IO, name, adios2_mode_write); - - return handle; -} - -H5VL_FileDef_t *gADIOS2OpenFile(const char *name) -{ - H5VL_FileDef_t *handle = NULL; - handle = (H5VL_FileDef_t *)SAFE_CALLOC(1, sizeof(H5VL_FileDef_t)); - - // printf("===========> opening: file:%s\n", name); - - handle->m_IO = adios2_declare_io(m_ADIOS2, name); - - gChooseEngine(handle->m_IO); - handle->m_Engine = adios2_open(handle->m_IO, name, adios2_mode_read); - - char engineType[10]; - size_t engineTypeSize; - adios2_engine_get_type(engineType, &engineTypeSize, handle->m_Engine); - printf("==> engine type:%s", engineType); - if ((engineType[0] == 'B') && (engineType[2] == '5')) - { // BP5's IO is empty until beginStep is called. - // since there is no concept for steps in HDF5, sufficient to call - // begin/end steps here once. - H5VL_adios2_begin_read_step(name); - H5VL_adios2_endstep(name); - } - return handle; -} - -void gADIOS2CloseFile(H5VL_FileDef_t *handle) -{ - if (NULL == handle) - return; - - if (NULL != handle->m_Engine) - adios2_close(handle->m_Engine); - - SAFE_FREE(handle); -} - -adios2_variable *gADIOS2InqVar(adios2_io *io, const char *name) -{ - return adios2_inquire_variable(io, name); -} - -herr_t gADIOS2ReadVar(H5VL_VarDef_t *varDef) -{ - REQUIRE_NOT_NULL_ERR(varDef, -1); - REQUIRE_NOT_NULL_ERR(varDef->m_Variable, -1); - - int varDim = varDef->m_DimCount; - if (varDim < 0) - return -1; - - if (varDim > 0) - { - size_t start[varDim], count[varDim]; - if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, - start, count, varDim)) - return -1; - - adios2_set_selection(varDef->m_Variable, varDef->m_DimCount, start, - count); - - if (varDef->m_MemSpaceID > 0) - { - RANK_ZERO_MSG( - "\n## No memory space is supported for reading in ADIOS...\n"); - } - } - adios2_get(varDef->m_Engine, varDef->m_Variable, varDef->m_Data, - adios2_mode_sync); - - return 0; -} - -adios2_variable *gADIOS2DefineVar(adios2_io *io, H5VL_VarDef_t *varDef) -{ - adios2_variable *variable = adios2_inquire_variable(io, varDef->m_Name); - if (NULL == variable) - { - adios2_type varType = gUtilADIOS2Type(varDef->m_TypeID); - - size_t varDim = 1; // gUtilGetSpaceInfo(; - - varDim = gUtilADIOS2GetDim(varDef->m_ShapeID); - - if (0 == varDim) - { // scalar - variable = adios2_define_variable(io, varDef->m_Name, varType, - varDim, NULL, NULL, NULL, - adios2_constant_dims_true); - } - else - { - varDef->m_DimCount = varDim; - - size_t shape[varDim]; - gUtilADIOS2GetShape(varDef->m_ShapeID, shape, varDim); - - variable = adios2_define_variable(io, varDef->m_Name, varType, - varDim, shape, NULL, NULL, - adios2_constant_dims_false); - } - } - - return variable; -} - -adios2_variable *gADIOS2CreateVar(adios2_io *io, H5VL_VarDef_t *varDef) -{ - REQUIRE_NOT_NULL_ERR(varDef, NULL); - - adios2_variable *variable = adios2_inquire_variable(io, varDef->m_Name); - size_t varDim = 1; - - if (NULL == variable) - { - adios2_type varType = gUtilADIOS2Type(varDef->m_TypeID); - if (adios2_type_unknown == varType) - { - SHOW_ERROR_MSG( - "... ERROR! Unsupported type. Cannot identify var type. %s\n", - varDef->m_Name); - return NULL; - } - - varDim = gUtilADIOS2GetDim(varDef->m_ShapeID); - - if (0 == varDim) - { // scalar - variable = adios2_define_variable(io, varDef->m_Name, varType, - varDim, NULL, NULL, NULL, - adios2_constant_dims_true); - } - else - { - varDef->m_DimCount = varDim; - - size_t shape[varDim]; - gUtilADIOS2GetShape(varDef->m_ShapeID, shape, varDim); - - size_t start[varDim], count[varDim]; - if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, - start, count, varDim)) - return NULL; - - variable = adios2_define_variable(io, varDef->m_Name, varType, - varDim, shape, start, count, - adios2_constant_dims_true); - } - } - - if (NULL != varDef->m_Data) - { - varDim = gUtilADIOS2GetDim(varDef->m_ShapeID); - if (varDim > 0) - { - size_t start[varDim], count[varDim]; - if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, - start, count, varDim)) - return NULL; - adios2_set_selection(variable, varDim, start, count); - - if ((varDef->m_MemSpaceID > 0) && - (varDef->m_MemSpaceID != varDef->m_ShapeID)) - { - RANK_ZERO_MSG( - "\n## No support of memory space for writing in ADIOS.\n"); - } - } - adios2_put(varDef->m_Engine, variable, varDef->m_Data, - adios2_mode_sync); - } - - return variable; -} - -adios2_attribute *gADIOS2CreateAttr(adios2_io *io, H5VL_AttrDef_t *input, - const char *fullPath) -{ - adios2_type attrType = gUtilADIOS2Type(input->m_TypeID); - - if (adios2_type_unknown == attrType) - { - SHOW_ERROR_MSG("... ERROR Unsupported type. Cannot create attr %s\n", - fullPath); - return NULL; - } - - size_t attrDim = 0; - - if (NULL != adios2_inquire_attribute(io, fullPath)) - { - /* - printf("... adios2 attribute %s is already created.\n", fullPath); - return NULL; - */ - gADIOS2RemoveAttr(io, fullPath); - } - - if (gUtilADIOS2IsScalar(input->m_SpaceID)) - { - return adios2_define_attribute(io, fullPath, attrType, input->m_Data); - } - else - { - attrDim = gUtilADIOS2GetDim(input->m_SpaceID); - - if (1 != attrDim) - { - printf("Unable to support 2+D arrays in ADIOS2 attributes. Use " - "Vars instead."); - return NULL; - } - - size_t shape[attrDim]; - gUtilADIOS2GetShape(input->m_SpaceID, shape, attrDim); - - if (adios2_type_string == attrType) - { - size_t strSize = H5Tget_size(input->m_TypeID); - htri_t isVariableSize = H5Tis_variable_str(input->m_TypeID); - /*printf("attr: %s is string array, is variable str? %d, " - "H5Tget_size=%lu\n", - input->m_Name, isVariableSize, strSize); - */ - if (isVariableSize) - return adios2_define_attribute_array(io, fullPath, attrType, - (input->m_Data), shape[0]); - else - { - int i; - - char *arrayOfStr[shape[0]]; - for (i = 0; i < shape[0]; i++) - { - arrayOfStr[i] = malloc(sizeof(char) * strSize + 1); - strncpy(arrayOfStr[i], - (char *)(input->m_Data) + strSize * i, strSize); - arrayOfStr[i][strSize] = '\0'; - - // printf(".... output attr: %d, [%s]", i, arrayOfStr[i]); - } - adios2_attribute *result = adios2_define_attribute_array( - io, fullPath, attrType, arrayOfStr, shape[0]); - for (i = 0; i < shape[0]; i++) - free(arrayOfStr[i]); - return result; - } - } - else - // return adios2_define_attribute_array(io, fullPath, attrType, - // &(input->m_Data), shape[0]); - return adios2_define_attribute_array(io, fullPath, attrType, - (input->m_Data), shape[0]); - } -} - -adios2_attribute *gADIOS2InqAttr(adios2_io *io, const char *name) -{ - return adios2_inquire_attribute(io, name); -} - -bool gADIOS2RemoveAttr(adios2_io *io, const char *name) -{ - adios2_bool result; - adios2_remove_attribute(&result, io, name); - return (adios2_true == result); -} - -hid_t H5VL_adios_register(void) -{ - if (H5I_VOL != H5Iget_type(H5VL_ADIOS_g)) - { - - H5VL_ADIOS_g = H5VLregister_connector(&H5VL_adios2_def, H5P_DEFAULT); - if (H5VL_ADIOS_g <= 0) - { - SHOW_ERROR_MSG( - " [ECP ADIOS VOL ERROR] with H5VLregister_connector\n"); - return -1; - } - } - - return H5VL_ADIOS_g; -} - -/* - */ -herr_t H5P_unset_adios() { return H5VLunregister_connector(H5VL_ADIOS_g); } +#include "H5VLpublic.h" +#include "hdf5.h" +#define H5S_FRIEND // suppress error for H5Spkg +#define H5O_FRIEND // suppress error for H5Opkg + +#include +#include +#include +#include + +#if ADIOS2_USE_MPI +#include +#endif + +#include "H5Epublic.h" +#include "H5VolReadWrite.h" + +#include "H5VolUtil.h" + +#ifdef HAVE_UNISTD_H +#include // sleep +#elif defined HAVE_WINDOWS_H +#include +#define sleep(x) Sleep(1000 * (x)) +#endif + +// these are in h5private.h +#define SUCCEED 1 +#define FAIL 0 + +static hid_t H5VL_ADIOS_g = -1; + +static adios2_adios *m_ADIOS2 = NULL; +// static adios2_io *m_IO = NULL; +static int m_MPIRank = 0; + +#define RANK_ZERO_MSG(...) \ + { \ + if (0 == m_MPIRank) \ + { \ + fprintf(stderr, "## VOL info:"); \ + fprintf(stderr, __VA_ARGS__); \ + fflush(stderr); \ + } \ + } + +void gGenerateFullPath(char *fullPath, const char *parentPath, const char *name) +{ + size_t ps = strlen(parentPath); + size_t ns = strlen(name); + size_t length = ps; + bool startsWithDotSlash = + ((ns > 1) && ('/' == name[1]) && ('.' == name[0])); + + if ('/' == parentPath[ps - 1]) + { + if (startsWithDotSlash) + { + sprintf(fullPath, "%s%s", parentPath, name + 2); + length += ns - 2; + } + else + { + sprintf(fullPath, "%s%s", parentPath, name); + length += ns; + } + } + else + { + if (startsWithDotSlash) + { + sprintf(fullPath, "%s/%s", parentPath, name + 2); + length += 1 + ns - 2; + } + else + { + sprintf(fullPath, "%s/%s", parentPath, name); + length += 1 + ns; + } + } + fullPath[length] = '\0'; +} + +herr_t H5VL_adios2_begin_read_step(const char *filename) +{ + return H5VL_adios2_beginstep(filename, adios2_step_mode_read); +} + +herr_t H5VL_adios2_begin_write_step(const char *filename) +{ + return H5VL_adios2_beginstep(filename, adios2_step_mode_append); +} + +herr_t H5VL_adios2_beginstep(const char *filename, adios2_step_mode m) +{ + adios2_io *m_IO = adios2_at_io(m_ADIOS2, filename); + adios2_engine *currEngine = adios2_get_engine(m_IO, filename); + if (NULL == currEngine) + return -1; + + adios2_step_status status; + adios2_begin_step(currEngine, m, 0.0, &status); + + if (adios2_step_status_end_of_stream == status) + { + RANK_ZERO_MSG("..end_of_stream \n"); + return -1; + } + else if (adios2_step_status_not_ready == status) + { + RANK_ZERO_MSG(".. not ready \n"); + while (adios2_step_status_not_ready == status) + { + sleep(1); + adios2_begin_step(currEngine, m, 0.0, &status); + } + RANK_ZERO_MSG("... other status \n"); + if (adios2_step_status_ok == status) + { + return 0; + } + return -1; + } + else if (adios2_step_status_ok == status) + { + RANK_ZERO_MSG(".. stream ready \n"); + return 0; + } + return -1; +} + +herr_t H5VL_adios2_endstep(const char *filename) +{ + adios2_io *m_IO = adios2_at_io(m_ADIOS2, filename); + adios2_engine *engine = adios2_get_engine(m_IO, filename); + if (NULL == engine) + return -1; + + adios2_end_step(engine); + return 0; +} + +void gInitADIOS2(hid_t acc_tpl) +{ + if (NULL != m_ADIOS2) + return; + +#if ADIOS2_USE_MPI + int flag = 0; + MPI_Initialized(&flag); + if (!flag) + { + RANK_ZERO_MSG("H5VL_ADIOS2 WARNING: MPI is not initialized, will use " + "Serial ADIOS\n"); + m_ADIOS2 = adios2_init_serial(); + } + else + { + MPI_Comm comm = MPI_COMM_WORLD; + if (H5Pget_driver(acc_tpl) == H5FD_MPIO) + { + MPI_Info info; + H5Pget_fapl_mpio(acc_tpl, &comm, &info); + // int rank; + } + MPI_Comm_rank(comm, &m_MPIRank); + m_ADIOS2 = adios2_init_mpi(comm); + } +#else + m_ADIOS2 = adios2_init_serial(); +#endif + REQUIRE_NOT_NULL(m_ADIOS2); +} + +void gExitADIOS2() +{ + if (NULL == m_ADIOS2) + return; + adios2_remove_all_ios(m_ADIOS2); + adios2_finalize(m_ADIOS2); + m_ADIOS2 = NULL; +} + +void loadPath(H5VL_ObjDef_t *result, const char *name, H5VL_ObjDef_t *parent) +{ + if (NULL == parent->m_Path) + { + result->m_Path = (char *)(SAFE_CALLOC(strlen(name) + 1, sizeof(char))); + strcpy(result->m_Path, name); + result->m_Path[strlen(name)] = '\0'; + } + else if ((strlen(parent->m_Path) == 1) && (parent->m_Path[0] == '/')) + { + result->m_Path = (char *)(SAFE_CALLOC(strlen(name) + 2, sizeof(char))); + sprintf(result->m_Path, "%s%s", parent->m_Path, name); + result->m_Path[strlen(name) + 1] = '\0'; + } + else + { + size_t size = strlen(name) + strlen(parent->m_Path) + 1; + if (parent->m_Path[strlen(parent->m_Path) - 1] == '/') + { + size = size - 1; + result->m_Path = (char *)(SAFE_CALLOC(size + 1, sizeof(char))); + sprintf(result->m_Path, "%s%s", parent->m_Path, name); + } + else + { + result->m_Path = (char *)(SAFE_CALLOC(size + 1, sizeof(char))); + sprintf(result->m_Path, "%s/%s", parent->m_Path, name); + } + // result->m_Path= + // (char*)(SAFE_CALLOC(strlen(name)+4+strlen(parent->m_Path), + // sizeof(char))); + result->m_Path[size] = '\0'; + } +} + +H5VL_ObjDef_t *initVolObj(H5VL_ObjDef_t *parent) +{ + H5VL_ObjDef_t *result = + (H5VL_ObjDef_t *)SAFE_CALLOC(1, sizeof(H5VL_ObjDef_t)); + result->m_Parent = parent; + + result->m_ObjPtr = NULL; + result->m_Path = NULL; + result->m_SubGroupNames = NULL; + + result->m_NumAttrs = 0; + result->m_NumVars = 0; + result->m_NumSubGroups = 0; + + result->m_Vars = NULL; + result->m_Attrs = NULL; + + if (NULL == parent) + result->m_FileIO = NULL; + else + result->m_FileIO = parent->m_FileIO; + + return result; +} + +void gFreeVol(H5VL_ObjDef_t *vol) +{ + if (NULL == vol) + return; + + if (NULL != vol->m_Vars) + { + SAFE_FREE(vol->m_Vars); + } + + if (NULL != vol->m_Attrs) + { + SAFE_FREE(vol->m_Attrs); + } + + if (NULL != vol->m_SubGroupNames) + { + int i; + for (i = 0; i < vol->m_NumSubGroups; i++) + SAFE_FREE(vol->m_SubGroupNames[i]); + + SAFE_FREE(vol->m_SubGroupNames); + } + + SAFE_FREE(vol->m_Path); + SAFE_FREE(vol); + vol = NULL; +} + +void *gAttrToVolObj(H5VL_AttrDef_t *attr, H5VL_ObjDef_t *parent) +{ + H5VL_ObjDef_t *result = initVolObj(parent); + + result->m_ObjType = ATTR; + result->m_ObjPtr = attr; + + loadPath(result, attr->m_Name, parent); + return result; +} + +void *gGroupToVolObj(H5VL_GroupDef_t *group, H5VL_ObjDef_t *parent) +{ + H5VL_ObjDef_t *result = initVolObj(parent); + result->m_ObjType = GROUP; + result->m_ObjPtr = group; + + loadPath(result, group->m_Name, parent); + + return result; +} + +void *gVarToVolObj(H5VL_VarDef_t *var, H5VL_ObjDef_t *parent) +{ + H5VL_ObjDef_t *result = initVolObj(parent); + result->m_ObjType = VAR; + result->m_ObjPtr = var; + + loadPath(result, var->m_Name, parent); + return result; +} + +void *gFileToVolObj(H5VL_FileDef_t *f) +{ + H5VL_ObjDef_t *result = initVolObj(NULL); + result->m_ObjType = ROOT; + result->m_ObjPtr = f; + + result->m_FileIO = f->m_IO; + return result; +} + +adios2_attribute *gLocateAttrFrom(H5VL_ObjDef_t *owner, const char *attrName) +{ + if (NULL == owner) + return NULL; + + if (ROOT == owner->m_ObjType) + return adios2_inquire_attribute(owner->m_FileIO, attrName); + + if ((GROUP == owner->m_ObjType) || (VAR == owner->m_ObjType)) + { + size_t ss = strlen(owner->m_Path); + if ('/' == (owner->m_Path)[ss - 1]) + { + char fullPath[strlen(owner->m_Path) + 4 + strlen(attrName)]; + sprintf(fullPath, "%s%s", owner->m_Path, attrName); + return adios2_inquire_attribute(owner->m_FileIO, fullPath); + } + else + { + char fullPath[strlen(owner->m_Path) + 4 + strlen(attrName)]; + sprintf(fullPath, "%s/%s", owner->m_Path, attrName); + return adios2_inquire_attribute(owner->m_FileIO, fullPath); + } + } + return NULL; +} + +// +// returns 0 is obj_name is not under owner +// returns 1 is obj_name is under owner +// +htri_t gExistsUnderGrp(H5VL_ObjDef_t *owner, const char *obj_name) +{ + if (NULL == owner) + return 0; + + if (ROOT == owner->m_ObjType) + { + if (NULL != adios2_inquire_attribute(owner->m_FileIO, obj_name)) + return 1; + if (NULL != adios2_inquire_variable(owner->m_FileIO, obj_name)) + return 1; + return 0; + } + + if (GROUP != owner->m_ObjType) + return 0; + + char fullPath[strlen(owner->m_Path) + 4 + strlen(obj_name)]; + sprintf(fullPath, "%s/%s", owner->m_Path, obj_name); + + if (NULL != adios2_inquire_attribute(owner->m_FileIO, fullPath)) + return 1; + + if (NULL != adios2_inquire_variable(owner->m_FileIO, fullPath)) + return 1; + + return 0; +} + +// +// return: +// if obj_name is found and deleted. +// otherwise +// +bool gRemoveUnderGrp(H5VL_ObjDef_t *owner, const char *obj_name) +{ + if (NULL == owner) + return 0; + + adios2_bool result; + + if (ROOT == owner->m_ObjType) + { + if (adios2_error_none == + adios2_remove_attribute(&result, owner->m_FileIO, obj_name)) + if (adios2_true == result) + return true; + if (adios2_error_none == + adios2_remove_variable(&result, owner->m_FileIO, obj_name)) + if (adios2_true == result) + return true; + return false; + } + + if (GROUP != owner->m_ObjType) + return false; + + char fullPath[strlen(owner->m_Path) + 4 + strlen(obj_name)]; + gGenerateFullPath(fullPath, owner->m_Path, obj_name); + // sprintf(fullPath, "%s/%s", owner->m_Path, obj_name); + + if (adios2_error_none == + adios2_remove_attribute(&result, owner->m_FileIO, fullPath)) + if (adios2_true == result) + return true; + if (adios2_error_none == + adios2_remove_variable(&result, owner->m_FileIO, fullPath)) + if (adios2_true == result) + return true; + +#ifdef NEVER + return false; +#else + printf("\n......... NOTE: unable to remove GROUP %s \n\n", fullPath); + return true; +#endif +} + +void gLoadAttrDef(H5VL_AttrDef_t *attrDef) +{ + adios2_attribute *attr = attrDef->m_Attribute; + if (NULL == attr) + return; + + adios2_bool boolVal; + adios2_attribute_is_value(&boolVal, attr); + if (adios2_true == boolVal) + { + attrDef->m_SpaceID = H5Screate(H5S_SCALAR); + attrDef->m_Size = 1; + } + else + { + attrDef->m_IsScalar = false; + adios2_attribute_size(&(attrDef->m_Size), attr); + attrDef->m_SpaceID = H5Screate(H5S_SIMPLE); + // NOTE: adios only supports 1 dimension + hsize_t ss = (hsize_t)(attrDef->m_Size); + H5Sset_extent_simple(attrDef->m_SpaceID, 1, &ss, NULL); + } + + adios2_type adiosType; + adios2_attribute_type(&adiosType, attr); + attrDef->m_TypeID = gUtilHDF5Type(adiosType); + + /* + if (adios2_type_string == adiosType) { + char typeNameStr[30]; + size_t typeNameSize; + adios2_attribute_type_string (typeNameStr, &typeNameSize, attr); + // need a way to get actual string value size, not type sie + //printf(" string type= %s, name=%s, size= %lu\n", attrDef->m_Name, + typeNameStr, typeNameSize); + } + */ +} + +H5VL_ObjDef_t *gGetVarObjDef(const char *name, H5VL_ObjDef_t *vol) +{ + if (vol->m_ObjType == ROOT) + { // no vol->m_Path + if ((strlen(name) == 1) && (name[0] == '/')) + { + // root group, not var + return NULL; + } + H5VL_FileDef_t *handle = (H5VL_FileDef_t *)(vol->m_ObjPtr); + adios2_variable *var = gADIOS2InqVar(vol->m_FileIO, name); + if (NULL == var) + { + if (name[strlen(name) - 1] != '/') + { + SHOW_ERROR_MSG( + "H5VL_ADIOS2: Error: No such variable: %s in file\n ", + name); + return NULL; + } + + char *n = (char *)(SAFE_CALLOC(strlen(name) + 1, sizeof(char))); + strcpy(n, name); + n[strlen(name) - 1] = '\0'; + var = gADIOS2InqVar(vol->m_FileIO, n); + SAFE_FREE(n); + if (NULL == var) + { + return NULL; + } + } + H5VL_VarDef_t *varDef = + gCreateVarDef(name, handle->m_Engine, var, -1, -1); + return gVarToVolObj(varDef, vol); + } + + char fullPath[strlen(vol->m_Path) + 4 + strlen(name)]; + gGenerateFullPath(fullPath, vol->m_Path, name); + + if ('/' == name[strlen(name) - 1]) + { + fullPath[strlen(fullPath) - 1] = '\0'; + } + + adios2_variable *var = gADIOS2InqVar(vol->m_FileIO, fullPath); + if (NULL == var) + { + SHOW_ERROR_MSG("H5VL_ADIOS2: Error: No such variable:: %s in file\n ", + fullPath); + return NULL; + } + + H5VL_ObjDef_t *curr = vol; + while (curr) + { + if (curr->m_Parent == NULL) + { + H5VL_VarDef_t *varDef = gCreateVarDef( + fullPath, ((H5VL_FileDef_t *)(curr->m_ObjPtr))->m_Engine, var, + -1, -1); + + return gVarToVolObj(varDef, vol); + } + else + { + curr = curr->m_Parent; + } + } + + return NULL; +} + +H5VL_AttrDef_t *gCreateAttrDef(const char *name, hid_t type_id, hid_t space_id) +{ + H5VL_AttrDef_t *attrDef = + (H5VL_AttrDef_t *)SAFE_CALLOC(1, sizeof(H5VL_AttrDef_t)); + attrDef->m_Attribute = NULL; + attrDef->m_Size = 0; + + attrDef->m_Name = (char *)SAFE_CALLOC(strlen(name) + 1, sizeof(char)); + sprintf(attrDef->m_Name, "%s", name); + attrDef->m_Name[strlen(name)] = '\0'; + + attrDef->m_TypeID = type_id; + + attrDef->m_IsScalar = true; + + if (space_id != -1) // most likely from H5Dcreate + attrDef->m_SpaceID = H5Scopy(space_id); + else + attrDef->m_SpaceID = -1; + + return attrDef; +} + +H5VL_VarDef_t *gCreateVarDef(const char *name, adios2_engine *engine, + adios2_variable *var, hid_t space_id, + hid_t type_id) +{ + if ((-1 == type_id) && (NULL == var)) + { + printf("UNABLE to create var with unknown var _and_ unknown type"); + return NULL; + } + H5VL_VarDef_t *varDef = + (H5VL_VarDef_t *)SAFE_CALLOC(1, sizeof(H5VL_VarDef_t)); + varDef->m_Name = (char *)SAFE_CALLOC(strlen(name) + 1, sizeof(char)); + sprintf(varDef->m_Name, "%s", name); + + varDef->m_Engine = engine; + varDef->m_Variable = var; + varDef->m_DimCount = (size_t)-1; // default: unknown + varDef->m_TypeID = -1; // default: unknown + varDef->m_Data = NULL; + + if (space_id != -1) // most likely from H5Dcreate + { + varDef->m_ShapeID = H5Scopy(space_id); + varDef->m_DimCount = H5Sget_simple_extent_ndims(space_id); + } + else + { // likely from H5Dopen, so get space info from adios var: + REQUIRE_NOT_NULL_ERR(var, NULL); + size_t nDims; + if (adios2_error_none != adios2_variable_ndims(&nDims, var)) + { + SAFE_FREE(varDef); + return NULL; + } + + varDef->m_DimCount = nDims; + + size_t shape[nDims]; + if (adios2_error_none != adios2_variable_shape(shape, var)) + { + SAFE_FREE(varDef); + return NULL; + } + + hid_t filespace = H5Screate_simple(nDims, (hsize_t *)shape, NULL); + varDef->m_ShapeID = filespace; + } + + if (type_id != -1) + varDef->m_TypeID = type_id; + else + { + adios2_type adiosType; + adios2_variable_type(&adiosType, var); + varDef->m_TypeID = gUtilHDF5Type(adiosType); + + /* + if (adios2_type_string == adiosType) { + char typeNameStr[30]; + size_t typeNameSize; + adios2_variable_type_string (typeNameStr, &typeNameSize, var); + printf(" var type= %s\n", typeNameStr); + } + */ + } + + return varDef; +} + +H5VL_GroupDef_t *gCreateGroupDef(const char *name) +{ + H5VL_GroupDef_t *grp = + (H5VL_GroupDef_t *)SAFE_CALLOC(1, sizeof(H5VL_GroupDef_t)); + + grp->m_Name = (char *)SAFE_CALLOC(strlen(name) + 1, sizeof(char)); + sprintf(grp->m_Name, "%s", name); + + return grp; +} + +size_t gGetBranchNameLength(H5VL_ObjDef_t *vol, size_t namelen) +{ + if (vol->m_Path != NULL) + if ('/' == (vol->m_Path)[strlen(vol->m_Path) - 1]) + return namelen - strlen(vol->m_Path); // minus parent path + else + return namelen - strlen(vol->m_Path) - + 1; // minus parent path & seperator + else + return namelen; +} + +void gGetBranchName(H5VL_ObjDef_t *vol, const char *fullPath, char *name) +{ + size_t namelen = strlen(fullPath); + + if ('/' == (vol->m_Path)[strlen(vol->m_Path) - 1]) + // minus parent path & seperator + strncpy(name, fullPath + strlen(vol->m_Path), + namelen - strlen(vol->m_Path)); + else + strncpy(name, fullPath + strlen(vol->m_Path) + 1, + namelen - strlen(vol->m_Path) - 1); +} + +// +// returns length of name +// +size_t gGetNameOfNthAttr(H5VL_ObjDef_t *vol, uint32_t idx, char *name) +{ + gLoadContent(vol); + if (0 == vol->m_NumAttrs) + return 0; + + if (idx >= vol->m_NumAttrs) + return 0; + + adios2_attribute *curr = (vol->m_Attrs)[idx]; + + size_t namelen; + adios2_attribute_name(NULL, &namelen, curr); + + if ((NULL != name) && (NULL == vol->m_Path)) + adios2_attribute_name(name, &namelen, curr); + else if (NULL != name) + { + char fullPath[namelen + 1]; + adios2_attribute_name(fullPath, &namelen, curr); + fullPath[namelen] = '\0'; + + gGetBranchName(vol, fullPath, name); + // printf(".... [%s] vs [%s]\n", fullPath, name); + } + + return gGetBranchNameLength(vol, namelen); +} + +// +// returns length of name +// of either dataset or subgroup +// called from: H5Gget_info, then H5Gget_objname_by_idx +// (which calls H5Lget_name.. ) +// +size_t gGetNameOfNthItem(H5VL_ObjDef_t *vol, uint32_t idx, char *name) +{ + gLoadContent(vol); + + /* + if (idx < vol->m_NumAttrs) + return gGetNameOfNthAttr(vol, idx, name); + + uint32_t vIdx = idx - vol->m_NumAttrs; + if (vIdx < vol->m_NumVars) + */ + if (idx < vol->m_NumVars) + { + adios2_variable *curr = (vol->m_Vars)[idx]; + + size_t namelen; + adios2_variable_name(NULL, &namelen, curr); + + if ((NULL != name) && (NULL == vol->m_Path)) + adios2_variable_name(name, &namelen, curr); + else if (NULL != name) + { + char fullPath[namelen + 1]; + adios2_variable_name(fullPath, &namelen, curr); + fullPath[namelen] = '\0'; + + gGetBranchName(vol, fullPath, name); + // printf(".... [%s] vs [%s]\n", fullPath, name); + } + return gGetBranchNameLength(vol, namelen); + } + + // now try subgroups + if (0 == vol->m_NumSubGroups) + return 0; + + uint32_t vIdx = idx - vol->m_NumVars; + if (vIdx >= vol->m_NumSubGroups) + return 0; + + char *n = vol->m_SubGroupNames[vIdx]; + if (NULL != name) + { + sprintf(name, "%s", n); + } + return strlen(n); +} + +// +// load attributes and vars that belongs to this obj +// +void gLoadContent(H5VL_ObjDef_t *obj) +{ + if (0 < (obj->m_NumVars + obj->m_NumAttrs)) + return; + + size_t nvars, nattrs; + { + if ((ROOT == obj->m_ObjType) || (GROUP == obj->m_ObjType)) + { + adios2_variable **adios_vars; + adios2_inquire_group_variables(&adios_vars, obj->m_Path, &nvars, + obj->m_FileIO); + + obj->m_NumVars = nvars; + if (nvars > 0) + obj->m_Vars = adios_vars; + } + } + + { + if (ATTR != obj->m_ObjType) + { + adios2_attribute **adios_attrs; + adios2_inquire_group_attributes(&adios_attrs, obj->m_Path, &nattrs, + obj->m_FileIO); + + obj->m_NumAttrs = nattrs; + if (nattrs > 0) + obj->m_Attrs = adios_attrs; + } + } +} + +// +// +void gLoadSubGroups(H5VL_ObjDef_t *obj) +{ + // NOTE: subgroups will be supported when ADIOS supports hierarchy properly + if ((ROOT == obj->m_ObjType) || (GROUP == obj->m_ObjType)) + { + if (obj->m_NumSubGroups > 0) + return; + + adios2_inquire_subgroups(&(obj->m_SubGroupNames), obj->m_Path, + &(obj->m_NumSubGroups), obj->m_FileIO); + return; + } +} + +void gChooseEngine(adios2_io *io) +{ + const char *engineType = getenv("ADIOS2_ENGINE"); + + if (engineType != NULL) + { + if (0 == m_MPIRank) + printf(" ADIOS2 will apply engine: %s\n", engineType); + adios2_set_engine(io, engineType); + } + else + { + adios2_set_engine(io, "BP4"); + } +} + +H5VL_FileDef_t *gADIOS2CreateFile(const char *name) +{ + H5VL_FileDef_t *handle = NULL; + handle = (H5VL_FileDef_t *)SAFE_CALLOC(1, sizeof(H5VL_FileDef_t)); + + // if (0 == m_MPIRank) + // printf("===========> creating: file:%s\n", name); + + handle->m_IO = adios2_declare_io(m_ADIOS2, name); + + if (NULL == handle->m_IO) + handle->m_IO = adios2_at_io(m_ADIOS2, name); + + if (NULL == handle->m_IO) + { + SAFE_FREE(handle); + return NULL; + } + + adios2_set_parameter(handle->m_IO, "Profile", "Off"); + gChooseEngine(handle->m_IO); + handle->m_Engine = adios2_open(handle->m_IO, name, adios2_mode_write); + + return handle; +} + +H5VL_FileDef_t *gADIOS2OpenFile(const char *name) +{ + H5VL_FileDef_t *handle = NULL; + handle = (H5VL_FileDef_t *)SAFE_CALLOC(1, sizeof(H5VL_FileDef_t)); + + // printf("===========> opening: file:%s\n", name); + + handle->m_IO = adios2_declare_io(m_ADIOS2, name); + + gChooseEngine(handle->m_IO); + handle->m_Engine = adios2_open(handle->m_IO, name, adios2_mode_read); + + char engineType[10]; + size_t engineTypeSize; + adios2_engine_get_type(engineType, &engineTypeSize, handle->m_Engine); + printf("==> engine type:%s", engineType); + if ((engineType[0] == 'B') && (engineType[2] == '5')) + { // BP5's IO is empty until beginStep is called. + // since there is no concept for steps in HDF5, sufficient to call + // begin/end steps here once. + H5VL_adios2_begin_read_step(name); + H5VL_adios2_endstep(name); + } + return handle; +} + +void gADIOS2CloseFile(H5VL_FileDef_t *handle) +{ + if (NULL == handle) + return; + + if (NULL != handle->m_Engine) + adios2_close(handle->m_Engine); + + SAFE_FREE(handle); +} + +adios2_variable *gADIOS2InqVar(adios2_io *io, const char *name) +{ + return adios2_inquire_variable(io, name); +} + +herr_t gADIOS2ReadVar(H5VL_VarDef_t *varDef) +{ + REQUIRE_NOT_NULL_ERR(varDef, -1); + REQUIRE_NOT_NULL_ERR(varDef->m_Variable, -1); + + int varDim = varDef->m_DimCount; + if (varDim < 0) + return -1; + + if (varDim > 0) + { + size_t start[varDim], count[varDim]; + if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, + start, count, varDim)) + return -1; + + adios2_set_selection(varDef->m_Variable, varDef->m_DimCount, start, + count); + + if (varDef->m_MemSpaceID > 0) + { + RANK_ZERO_MSG( + "\n## No memory space is supported for reading in ADIOS...\n"); + } + } + adios2_get(varDef->m_Engine, varDef->m_Variable, varDef->m_Data, + adios2_mode_sync); + + return 0; +} + +adios2_variable *gADIOS2DefineVar(adios2_io *io, H5VL_VarDef_t *varDef) +{ + adios2_variable *variable = adios2_inquire_variable(io, varDef->m_Name); + if (NULL == variable) + { + adios2_type varType = gUtilADIOS2Type(varDef->m_TypeID); + + size_t varDim = 1; // gUtilGetSpaceInfo(; + + varDim = gUtilADIOS2GetDim(varDef->m_ShapeID); + + if (0 == varDim) + { // scalar + variable = adios2_define_variable(io, varDef->m_Name, varType, + varDim, NULL, NULL, NULL, + adios2_constant_dims_true); + } + else + { + varDef->m_DimCount = varDim; + + size_t shape[varDim]; + gUtilADIOS2GetShape(varDef->m_ShapeID, shape, varDim); + + variable = adios2_define_variable(io, varDef->m_Name, varType, + varDim, shape, NULL, NULL, + adios2_constant_dims_false); + } + } + + return variable; +} + +adios2_variable *gADIOS2CreateVar(adios2_io *io, H5VL_VarDef_t *varDef) +{ + REQUIRE_NOT_NULL_ERR(varDef, NULL); + + adios2_variable *variable = adios2_inquire_variable(io, varDef->m_Name); + size_t varDim = 1; + + if (NULL == variable) + { + adios2_type varType = gUtilADIOS2Type(varDef->m_TypeID); + if (adios2_type_unknown == varType) + { + SHOW_ERROR_MSG( + "... ERROR! Unsupported type. Cannot identify var type. %s\n", + varDef->m_Name); + return NULL; + } + + varDim = gUtilADIOS2GetDim(varDef->m_ShapeID); + + if (0 == varDim) + { // scalar + variable = adios2_define_variable(io, varDef->m_Name, varType, + varDim, NULL, NULL, NULL, + adios2_constant_dims_true); + } + else + { + varDef->m_DimCount = varDim; + + size_t shape[varDim]; + gUtilADIOS2GetShape(varDef->m_ShapeID, shape, varDim); + + size_t start[varDim], count[varDim]; + if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, + start, count, varDim)) + return NULL; + + variable = adios2_define_variable(io, varDef->m_Name, varType, + varDim, shape, start, count, + adios2_constant_dims_true); + } + } + + if (NULL != varDef->m_Data) + { + varDim = gUtilADIOS2GetDim(varDef->m_ShapeID); + if (varDim > 0) + { + size_t start[varDim], count[varDim]; + if (H5VL_CODE_FAIL == gUtilADIOS2GetBlockInfo(varDef->m_HyperSlabID, + start, count, varDim)) + return NULL; + adios2_set_selection(variable, varDim, start, count); + + if ((varDef->m_MemSpaceID > 0) && + (varDef->m_MemSpaceID != varDef->m_ShapeID)) + { + RANK_ZERO_MSG( + "\n## No support of memory space for writing in ADIOS.\n"); + } + } + adios2_put(varDef->m_Engine, variable, varDef->m_Data, + adios2_mode_sync); + } + + return variable; +} + +adios2_attribute *gADIOS2CreateAttr(adios2_io *io, H5VL_AttrDef_t *input, + const char *fullPath) +{ + adios2_type attrType = gUtilADIOS2Type(input->m_TypeID); + + if (adios2_type_unknown == attrType) + { + SHOW_ERROR_MSG("... ERROR Unsupported type. Cannot create attr %s\n", + fullPath); + return NULL; + } + + size_t attrDim = 0; + + if (NULL != adios2_inquire_attribute(io, fullPath)) + { + /* + printf("... adios2 attribute %s is already created.\n", fullPath); + return NULL; + */ + gADIOS2RemoveAttr(io, fullPath); + } + + if (gUtilADIOS2IsScalar(input->m_SpaceID)) + { + return adios2_define_attribute(io, fullPath, attrType, input->m_Data); + } + else + { + attrDim = gUtilADIOS2GetDim(input->m_SpaceID); + + if (1 != attrDim) + { + printf("Unable to support 2+D arrays in ADIOS2 attributes. Use " + "Vars instead."); + return NULL; + } + + size_t shape[attrDim]; + gUtilADIOS2GetShape(input->m_SpaceID, shape, attrDim); + + if (adios2_type_string == attrType) + { + size_t strSize = H5Tget_size(input->m_TypeID); + htri_t isVariableSize = H5Tis_variable_str(input->m_TypeID); + /*printf("attr: %s is string array, is variable str? %d, " + "H5Tget_size=%lu\n", + input->m_Name, isVariableSize, strSize); + */ + if (isVariableSize) + return adios2_define_attribute_array(io, fullPath, attrType, + (input->m_Data), shape[0]); + else + { + int i; + + char *arrayOfStr[shape[0]]; + for (i = 0; i < shape[0]; i++) + { + arrayOfStr[i] = malloc(sizeof(char) * strSize + 1); + strncpy(arrayOfStr[i], + (char *)(input->m_Data) + strSize * i, strSize); + arrayOfStr[i][strSize] = '\0'; + + // printf(".... output attr: %d, [%s]", i, arrayOfStr[i]); + } + adios2_attribute *result = adios2_define_attribute_array( + io, fullPath, attrType, arrayOfStr, shape[0]); + for (i = 0; i < shape[0]; i++) + free(arrayOfStr[i]); + return result; + } + } + else + // return adios2_define_attribute_array(io, fullPath, attrType, + // &(input->m_Data), shape[0]); + return adios2_define_attribute_array(io, fullPath, attrType, + (input->m_Data), shape[0]); + } +} + +adios2_attribute *gADIOS2InqAttr(adios2_io *io, const char *name) +{ + return adios2_inquire_attribute(io, name); +} + +bool gADIOS2RemoveAttr(adios2_io *io, const char *name) +{ + adios2_bool result; + adios2_remove_attribute(&result, io, name); + return (adios2_true == result); +} + +hid_t H5VL_adios_register(void) +{ + if (H5I_VOL != H5Iget_type(H5VL_ADIOS_g)) + { + + H5VL_ADIOS_g = H5VLregister_connector(&H5VL_adios2_def, H5P_DEFAULT); + if (H5VL_ADIOS_g <= 0) + { + SHOW_ERROR_MSG( + " [ECP ADIOS VOL ERROR] with H5VLregister_connector\n"); + return -1; + } + } + + return H5VL_ADIOS_g; +} + +/* + */ +herr_t H5P_unset_adios() { return H5VLunregister_connector(H5VL_ADIOS_g); } From eb3609ac4659b2c9c031ad9dc169d635bd77c9ae Mon Sep 17 00:00:00 2001 From: Vicente Bolea Date: Tue, 18 Jul 2023 12:14:47 -0400 Subject: [PATCH 066/183] Merge pull request #3697 from ornladios/dependabot/pip/docs/cryptography-41.0.2 build(deps): bump cryptography from 41.0.0 to 41.0.2 in /docs (cherry picked from commit 20ee00abcbd514ba84d1a936ece17db5e101500e) --- docs/requirements.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/requirements.txt b/docs/requirements.txt index 933b2e177a..2e0e27f85a 100644 --- a/docs/requirements.txt +++ b/docs/requirements.txt @@ -7,7 +7,7 @@ certifi==2023.7.22 cffi==1.15.1 charset-normalizer==2.1.1 colorama==0.4.6 -cryptography==41.0.0 +cryptography==41.0.2 docutils==0.17 funcparserlib==1.0.1 idna==3.4 From 2cfe548ae14fd6254f370cb456ac080b24997c07 Mon Sep 17 00:00:00 2001 From: Vicente Bolea Date: Wed, 2 Aug 2023 16:52:43 -0400 Subject: [PATCH 067/183] Merge pull request #3676 from pnorbert/c_version2 Version constants plus functions to retrieve list of ... (cherry picked from commit 490bed5985c0c05dff329d85d1e0036cb77d4f1c) --- cmake/ADIOSFunctions.cmake | 2 + source/adios2/CMakeLists.txt | 6 ++ source/adios2/common/ADIOSConfig.h.in | 2 + source/adios2/core/Info.cpp | 113 +++++++++++++++++++++ source/adios2/core/Info.h | 38 +++++++ source/utils/CMakeLists.txt | 2 +- source/utils/bpls/bpls.cpp | 42 ++++++++ source/utils/bpls/bpls.h | 2 + testing/adios2/interface/CMakeLists.txt | 1 + testing/adios2/interface/TestADIOSInfo.cpp | 41 ++++++++ 10 files changed, 248 insertions(+), 1 deletion(-) create mode 100644 source/adios2/core/Info.cpp create mode 100644 source/adios2/core/Info.h create mode 100644 testing/adios2/interface/TestADIOSInfo.cpp diff --git a/cmake/ADIOSFunctions.cmake b/cmake/ADIOSFunctions.cmake index 6e5332cc59..bcf38e6aae 100644 --- a/cmake/ADIOSFunctions.cmake +++ b/cmake/ADIOSFunctions.cmake @@ -99,10 +99,12 @@ function(GenerateADIOSHeaderConfig) ") if(ADIOS2_HAVE_${OPT}) set(ADIOS2_HAVE_${OPT_UPPER} 1) + string(APPEND ADIOS2_CONFIG_FEATURE_LIST "\"${OPT_UPPER}\",") else() set(ADIOS2_HAVE_${OPT_UPPER}) endif() endforeach() + string(APPEND ADIOS2_CONFIG_FEATURE_LIST "nullptr") configure_file( ${ADIOS2_SOURCE_DIR}/source/adios2/common/ADIOSConfig.h.in diff --git a/source/adios2/CMakeLists.txt b/source/adios2/CMakeLists.txt index f7f6643bf7..8db95b9d3c 100644 --- a/source/adios2/CMakeLists.txt +++ b/source/adios2/CMakeLists.txt @@ -18,6 +18,7 @@ add_library(adios2_core core/VariableBase.cpp core/Span.cpp core/Span.tcc core/Group.cpp core/Group.tcc + core/Info.cpp #operator operator/callback/Signature1.cpp @@ -398,6 +399,11 @@ install(FILES common/ADIOSMacros.h common/ADIOSTypes.h common/ADIOSTypes.inl install(DIRECTORY core/ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/adios2/core COMPONENT adios2_core-development FILES_MATCHING PATTERN "*.h" + PATTERN "Info.h" EXCLUDE +) + +install(FILES core/Info.h + DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} COMPONENT adios2_core-development ) install(DIRECTORY engine/ diff --git a/source/adios2/common/ADIOSConfig.h.in b/source/adios2/common/ADIOSConfig.h.in index 2fef35756b..ae0bccbb59 100644 --- a/source/adios2/common/ADIOSConfig.h.in +++ b/source/adios2/common/ADIOSConfig.h.in @@ -31,6 +31,8 @@ @ADIOS2_CONFIG_DEFINES@ +#define ADIOS2_FEATURE_LIST @ADIOS2_CONFIG_FEATURE_LIST@ + /* Everything between here and the note above is programatically generated */ #ifndef ADIOS2_USE_MPI diff --git a/source/adios2/core/Info.cpp b/source/adios2/core/Info.cpp new file mode 100644 index 0000000000..f6fab45756 --- /dev/null +++ b/source/adios2/core/Info.cpp @@ -0,0 +1,113 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * Info.h + * + * Created on: June 22, 2023 + * Author: Norbert Podhorszki pnorbert@ornl.gov + */ + +#include "Info.h" +#include "adios2/common/ADIOSConfig.h" + +#include +#include + +#ifdef __cplusplus +extern "C" { +#endif + +const int adios2_version_major = ADIOS2_VERSION_MAJOR; +const int adios2_version_minor = ADIOS2_VERSION_MINOR; +const int adios2_version_patch = ADIOS2_VERSION_PATCH; +const char adios2_version_str[] = ADIOS2_VERSION_STR; + +static const char *const engines[] = {"BP3", + "BP4", +#ifdef ADIOS2_HAVE_BP5 + "BP5", +#endif +#ifdef ADIOS2_HAVE_HDF5 + "HDF5", +#endif +#ifdef ADIOS2_HAVE_SST + "SST", +#endif +#ifdef ADIOS2_HAVE_MPI + "SSC", +#endif +#ifdef ADIOS2_HAVE_DataMan + "DataMan", +#endif +#ifdef ADIOS2_HAVE_DataSpaces + "DataSpaces", +#endif + "Inline", +#ifdef ADIOS2_HAVE_DAOS + "DAOS", +#endif +#ifdef ADIOS2_HAVE_MHS + "MHS", +#endif +#ifdef ADIOS2_HAVE_CATALYST + "ParaViewADIOSInSituEngine", +#endif + "Null", + "Skeleton", + nullptr}; + +void adios2_available_engines(size_t *nentries, const char *const **list) +{ + *nentries = (sizeof(engines) / sizeof(const char *)) - 1; + *list = engines; +} + +static const char *const operators[] = { +#ifdef ADIOS2_HAVE_BZIP2 + "BZip2", +#endif +#ifdef ADIOS2_HAVE_BLOSC2 + "Blosc", +#endif +#ifdef ADIOS2_HAVE_MGARD + "MGARD", + "MGARDPlus", +#endif +#ifdef ADIOS2_HAVE_SZ + "SZ", +#endif +#ifdef ADIOS2_HAVE_ZFP + "ZFP", +#endif +#ifdef ADIOS2_HAVE_PNG + "PNG", +#endif +#ifdef ADIOS2_HAVE_SIRIUS + "Sirius", +#endif +#ifdef ADIOS2_HAVE_LIBPRESSIO + "libpressio", +#ifdef ADIOS2_HAVE_SODIUM + "Sodium plugin", +#endif +#endif + nullptr}; + +void adios2_available_operators(size_t *nentries, const char *const **list) +{ + *nentries = (sizeof(operators) / sizeof(const char *)) - 1; + *list = operators; +} + +const char *adios2_feature_list[] = {ADIOS2_FEATURE_LIST}; + +void adios2_available_features(size_t *nentries, const char *const **list) +{ + *nentries = (sizeof(adios2_feature_list) / sizeof(const char *)) - 1; + *list = adios2_feature_list; +} + +#ifdef __cplusplus +} // end extern C +#endif diff --git a/source/adios2/core/Info.h b/source/adios2/core/Info.h new file mode 100644 index 0000000000..657cea1a0e --- /dev/null +++ b/source/adios2/core/Info.h @@ -0,0 +1,38 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * Info.h + * + * Created on: June 22, 2023 + * Author: Norbert Podhorszki pnorbert@ornl.gov + */ + +#ifndef ADIOS2_INFO_H_ +#define ADIOS2_INFO_H_ + +#include + +#ifdef __cplusplus +extern "C" { +#endif + +extern const int adios2_version_major; +extern const int adios2_version_minor; +extern const int adios2_version_patch; +extern const char adios2_version_str[]; + +/** Return the list of available Engines in the installed adios2 library */ +void adios2_available_engines(size_t *nentries, const char *const **list); + +/** Return the list of available Engines in the installed adios2 library */ +void adios2_available_operators(size_t *nentries, const char *const **list); + +/** Return the list of available features in the installed adios2 library */ +void adios2_available_features(size_t *nentries, const char *const **list); + +#ifdef __cplusplus +} // end extern C +#endif + +#endif /* ADIOS2_INFO_H_ */ diff --git a/source/utils/CMakeLists.txt b/source/utils/CMakeLists.txt index 227c176754..37153406c0 100644 --- a/source/utils/CMakeLists.txt +++ b/source/utils/CMakeLists.txt @@ -14,7 +14,7 @@ add_executable(bpls ./bpls/bpls.cpp) target_link_libraries(bpls PUBLIC adios2_core adios2sys PRIVATE adios2::thirdparty::pugixml $<$:shlwapi>) -target_include_directories(bpls PRIVATE ${PROJECT_BINARY_DIR}) +target_include_directories(bpls PRIVATE ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}/bindings/C) set_property(TARGET bpls PROPERTY OUTPUT_NAME bpls${ADIOS2_EXECUTABLE_SUFFIX}) install(TARGETS bpls EXPORT adios2 RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} COMPONENT adios2_tools-runtime diff --git a/source/utils/bpls/bpls.cpp b/source/utils/bpls/bpls.cpp index 553db18321..714b14f1ff 100644 --- a/source/utils/bpls/bpls.cpp +++ b/source/utils/bpls/bpls.cpp @@ -250,6 +250,48 @@ void print_bpls_version() } printf("Target OS: %s\n", ADIOS_INFO_SYSTEM); printf("Target Arch: %s\n", ADIOS_INFO_ARCH); + + size_t nengines; + const char *const *list_engines; + adios2_available_engines(&nengines, &list_engines); + printf("Available engines = %zu:", nengines); + for (size_t i = 0; i < nengines; ++i) + { + printf(" %s", list_engines[i]); + if (i < nengines - 1) + { + printf(","); + } + } + printf("\n"); + + size_t noperators; + const char *const *list_operators; + adios2_available_operators(&noperators, &list_operators); + printf("Available operators = %zu:", noperators); + for (size_t i = 0; i < noperators; ++i) + { + printf(" %s", list_operators[i]); + if (i < noperators - 1) + { + printf(","); + } + } + printf("\n"); + + size_t nfeatures; + const char *const *list_features; + adios2_available_features(&nfeatures, &list_features); + printf("Available features = %zu:", nfeatures); + for (size_t i = 0; i < nfeatures; ++i) + { + printf(" %s", list_features[i]); + if (i < nfeatures - 1) + { + printf(","); + } + } + printf("\n"); } } diff --git a/source/utils/bpls/bpls.h b/source/utils/bpls/bpls.h index 42a8d7363d..7ddec2e10a 100644 --- a/source/utils/bpls/bpls.h +++ b/source/utils/bpls/bpls.h @@ -14,6 +14,8 @@ #include "adios2/core/Variable.h" #include "adios2/helper/adiosFunctions.h" +#include "adios2/core/Info.h" + #include namespace adios2 diff --git a/testing/adios2/interface/CMakeLists.txt b/testing/adios2/interface/CMakeLists.txt index 050be805b9..25d7ccbf8b 100644 --- a/testing/adios2/interface/CMakeLists.txt +++ b/testing/adios2/interface/CMakeLists.txt @@ -29,3 +29,4 @@ gtest_add_tests_helper(Selection MPI_NONE ADIOS Interface. .BP3 gtest_add_tests_helper(Selection MPI_NONE ADIOS Interface. .BPfile WORKING_DIRECTORY ${BPfile_DIR} EXTRA_ARGS "BPfile") gtest_add_tests_helper(NoMpi MPI_NONE ADIOS Interface. "") +gtest_add_tests_helper(Info MPI_NONE ADIOS Interface. "") diff --git a/testing/adios2/interface/TestADIOSInfo.cpp b/testing/adios2/interface/TestADIOSInfo.cpp new file mode 100644 index 0000000000..b719537ab3 --- /dev/null +++ b/testing/adios2/interface/TestADIOSInfo.cpp @@ -0,0 +1,41 @@ +#include +#include + +TEST(ADIOSInterface, info_available_features) +{ + size_t nfeatures = 0; + const char *const *list_features = nullptr; + adios2_available_features(&nfeatures, &list_features); + + EXPECT_GE(nfeatures, 0); + EXPECT_NE(list_features, nullptr); + EXPECT_EQ(list_features[nfeatures], nullptr); +} + +TEST(ADIOSInterface, info_available_engines) +{ + size_t nengines = 0; + const char *const *list_engines = nullptr; + adios2_available_engines(&nengines, &list_engines); + + EXPECT_GE(nengines, 1); + EXPECT_NE(list_engines, nullptr); + EXPECT_EQ(list_engines[nengines], nullptr); +} + +TEST(ADIOSInterface, info_available_operators) +{ + size_t noperators = 0; + const char *const *list_operators = nullptr; + adios2_available_operators(&noperators, &list_operators); + + EXPECT_GE(noperators, 0); + EXPECT_NE(list_operators, nullptr); + EXPECT_EQ(list_operators[noperators], nullptr); +} + +int main(int argc, char **argv) +{ + ::testing::InitGoogleTest(&argc, argv); + return RUN_ALL_TESTS(); +} From 336aae6c8dd405a2a737c363842377fd674524d6 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Wed, 2 Aug 2023 21:11:28 -0400 Subject: [PATCH 068/183] Bump version to v2.9.1 --- CMakeLists.txt | 2 +- ReadMe.md | 2 +- docs/user_guide/source/conf.py | 2 +- docs/user_guide/source/setting_up/source/cmake.rst | 4 ++-- 4 files changed, 5 insertions(+), 5 deletions(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index ff352b268d..cbaf77516e 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -14,7 +14,7 @@ endif() include(${CMAKE_CURRENT_LIST_DIR}/cmake/ADIOSFunctions.cmake) -setup_version(2.9.0) +setup_version(2.9.1) project(ADIOS2 VERSION ${ADIOS2_VERSION}) diff --git a/ReadMe.md b/ReadMe.md index f89f815133..95bb71adfd 100644 --- a/ReadMe.md +++ b/ReadMe.md @@ -72,7 +72,7 @@ Once ADIOS2 is installed refer to: ## Releases -* Latest release: [v2.9.0](https://github.com/ornladios/ADIOS2/releases/tag/v2.9.0) +* Latest release: [v2.9.1](https://github.com/ornladios/ADIOS2/releases/tag/v2.9.1) * Previous releases: [https://github.com/ornladios/ADIOS2/releases](https://github.com/ornladios/ADIOS2/releases) diff --git a/docs/user_guide/source/conf.py b/docs/user_guide/source/conf.py index 5314e8498c..50ff5156fb 100644 --- a/docs/user_guide/source/conf.py +++ b/docs/user_guide/source/conf.py @@ -76,7 +76,7 @@ # The short X.Y version. version = u'2' # The full version, including alpha/beta/rc tags. -release = u'2.9.0' +release = u'2.9.1' # The language for content autogenerated by Sphinx. Refer to documentation # for a list of supported languages. diff --git a/docs/user_guide/source/setting_up/source/cmake.rst b/docs/user_guide/source/setting_up/source/cmake.rst index 8b0e44e54d..5c460a880b 100644 --- a/docs/user_guide/source/setting_up/source/cmake.rst +++ b/docs/user_guide/source/setting_up/source/cmake.rst @@ -132,12 +132,12 @@ Notes: $ export CMAKE_PREFIX_PATH=/opt/foo/bar $ cmake -DHDF5_ROOT=/opt/hdf5/1.13.0 ../ADIOS2 -Example: the following configuration will build, test and install under /opt/adios2/2.9.0 an optimized (Release) version of ADIOS2. +Example: the following configuration will build, test and install under /opt/adios2/2.9.1 an optimized (Release) version of ADIOS2. .. code-block:: bash $ cd build - $ cmake -DADIOS2_USE_Fortran=ON -DCMAKE_INSTALL_PREFIX=/opt/adios2/2.9.0 -DCMAKE_BUILD_Type=Release ../ADIOS2 + $ cmake -DADIOS2_USE_Fortran=ON -DCMAKE_INSTALL_PREFIX=/opt/adios2/2.9.1 -DCMAKE_BUILD_Type=Release ../ADIOS2 $ make -j16 $ ctest $ make install From 0f190de8f5733900c0647743a75396a20f070816 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Thu, 3 Aug 2023 17:40:34 -0400 Subject: [PATCH 069/183] cmake: fix evpath plugins install path --- thirdparty/EVPath/CMakeLists.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/thirdparty/EVPath/CMakeLists.txt b/thirdparty/EVPath/CMakeLists.txt index 2029fbeffc..42de1109e6 100644 --- a/thirdparty/EVPath/CMakeLists.txt +++ b/thirdparty/EVPath/CMakeLists.txt @@ -6,7 +6,7 @@ set(CMAKE_INSTALL_CMAKEDIR "${CMAKE_INSTALL_CMAKEDIR}/thirdparty") set(EVPATH_LIBRARY_PREFIX adios2${ADIOS2_LIBRARY_SUFFIX}_ CACHE INTERNAL "") set(EVPATH_QUIET ON CACHE INTERNAL "") set(EVPATH_INSTALL_HEADERS OFF CACHE INTERNAL "") -set(EVPATH_INSTALL_MODULE_DIR "${CMAKE_INSTALL_LIBDIR}/adios2_evpath_modules" CACHE INTERNAL "") +set(EVPATH_INSTALL_MODULE_DIR "${CMAKE_INSTALL_LIBDIR}/adios2-evpath-modules-${ADIOS2_VERSION_MAJOR}_${ADIOS2_VERSION_MINOR}" CACHE INTERNAL "") set(EVPATH_INSTALL_PKGCONFIG OFF CACHE INTERNAL "") set(EVPATH_NO_RDMA ON CACHE INTERNAL "") set(EVPATH_USE_UDT4 OFF CACHE INTERNAL "") From 00c3e971b12b1ebbf1d610af5fe86d7767641d4e Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Thu, 3 Aug 2023 18:14:07 -0400 Subject: [PATCH 070/183] ci: update release instructions --- .github/ISSUE_TEMPLATE/new_release.md | 21 +++++++++++++++++++-- 1 file changed, 19 insertions(+), 2 deletions(-) diff --git a/.github/ISSUE_TEMPLATE/new_release.md b/.github/ISSUE_TEMPLATE/new_release.md index 1406f04e30..a60870a8a8 100644 --- a/.github/ISSUE_TEMPLATE/new_release.md +++ b/.github/ISSUE_TEMPLATE/new_release.md @@ -44,10 +44,27 @@ git push git fetch origin git checkout -b release_@MAJOR@@MINOR@ origin/master # Use the following command with care -git push origin +git push origin release_@MAJOR@@MINOR@:release_@MAJOR@@MINOR@ ``` -- [ ] Create PR that merges release_@MAJOR@@MINOR@ into master +- [ ] Remove older patch releases for @MAJOR@.@MINOR@.X in ReadTheDocs. +- [ ] Create merge -sours commit in master: +``` +git fetch origin +git checkout master +git reset --hard origin/master +# We do not want the changes master from the release branch +git -s ours release_@MAJOR@@MINOR@ +# Be very careful here +git push origin master +``` + - [ ] Submit a PR in Spack that adds this new version of ADIOS (if not RC mark this new version as preferred) + - Run `spack checksum -a adios2` to add it, create commit; push it; Create + PR in Spack repo. +- [ ] Submit a PR in Conda that adds this new version of ADIOS (if not RC mark this new version as preferred) + - CondaForge robot should do this for you automatically, expect a new PR at + https://github.com/conda-forge/adios2-feedstock a couple of hours after the + release. - [ ] Write an announcement in the ADIOS-ECP mail-list (https://groups.google.com/a/kitware.com/g/adios-ecp) From a7893cde68e12530350c55adf9d54bcdc47eada5 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Thu, 3 Aug 2023 18:21:12 -0400 Subject: [PATCH 071/183] ci: add downloads readthedocs --- readthedocs.yml | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/readthedocs.yml b/readthedocs.yml index 01daae2c56..b2faeb48a6 100644 --- a/readthedocs.yml +++ b/readthedocs.yml @@ -1,9 +1,13 @@ # .readthedocs.yml version: 2 -conda: +conda: environment: docs/environment.yml - + python: version: 3.7 system_packages: true + +formats: + - pdf + - epub From 782dd0b7fb5a6886a1644f2cbca9e500f6fd0a12 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Fri, 4 Aug 2023 15:37:25 -0400 Subject: [PATCH 072/183] Remote Data access via Get() or Transport --- source/adios2/CMakeLists.txt | 9 + source/adios2/engine/bp5/BP5Engine.h | 1 + source/adios2/engine/bp5/BP5Reader.cpp | 48 ++- source/adios2/engine/bp5/BP5Reader.h | 6 + .../toolkit/format/bp5/BP5Deserializer.cpp | 102 ++--- .../toolkit/format/bp5/BP5Deserializer.h | 42 ++- source/adios2/toolkit/remote/CMakeLists.txt | 19 + source/adios2/toolkit/remote/Remote.cpp | 194 ++++++++++ source/adios2/toolkit/remote/Remote.h | 109 ++++++ .../adios2/toolkit/remote/remote_common.cpp | 111 ++++++ source/adios2/toolkit/remote/remote_common.h | 118 ++++++ .../adios2/toolkit/remote/remote_server.cpp | 352 ++++++++++++++++++ .../toolkit/transportman/TransportMan.cpp | 20 +- 13 files changed, 1053 insertions(+), 78 deletions(-) create mode 100644 source/adios2/toolkit/remote/CMakeLists.txt create mode 100644 source/adios2/toolkit/remote/Remote.cpp create mode 100644 source/adios2/toolkit/remote/Remote.h create mode 100644 source/adios2/toolkit/remote/remote_common.cpp create mode 100644 source/adios2/toolkit/remote/remote_common.h create mode 100644 source/adios2/toolkit/remote/remote_server.cpp diff --git a/source/adios2/CMakeLists.txt b/source/adios2/CMakeLists.txt index 6bdbcf38a8..659ca94e70 100644 --- a/source/adios2/CMakeLists.txt +++ b/source/adios2/CMakeLists.txt @@ -88,6 +88,8 @@ add_library(adios2_core toolkit/query/XmlWorker.cpp toolkit/query/BlockIndex.cpp + toolkit/remote/Remote.cpp + toolkit/transport/Transport.cpp toolkit/transport/file/FileStdio.cpp toolkit/transport/file/FileFStream.cpp @@ -157,6 +159,13 @@ if(ADIOS2_HAVE_AWSSDK) target_link_libraries(adios2_core PRIVATE ${AWSSDK_LINK_LIBRARIES}) endif() +if (ADIOS2_HAVE_SST) + # EVPath-enabled remote file transport + target_sources(adios2_core PRIVATE toolkit/remote/remote_common.cpp toolkit/transport/file/FileRemote.cpp) + target_link_libraries(adios2_core PRIVATE EVPath::EVPath) + add_subdirectory(toolkit/remote) +endif() + if (ADIOS2_HAVE_BP5) target_sources(adios2_core PRIVATE engine/bp5/BP5Engine.cpp diff --git a/source/adios2/engine/bp5/BP5Engine.h b/source/adios2/engine/bp5/BP5Engine.h index fe5d6d5371..354ec67949 100644 --- a/source/adios2/engine/bp5/BP5Engine.h +++ b/source/adios2/engine/bp5/BP5Engine.h @@ -154,6 +154,7 @@ class BP5Engine MACRO(StatsBlockSize, SizeBytes, size_t, DefaultStatsBlockSize) \ MACRO(Threads, UInt, unsigned int, 0) \ MACRO(UseOneTimeAttributes, Bool, bool, true) \ + MACRO(RemoteDataPath, String, std::string, "") \ MACRO(MaxOpenFilesAtOnce, UInt, unsigned int, UINT_MAX) struct BP5Params diff --git a/source/adios2/engine/bp5/BP5Reader.cpp b/source/adios2/engine/bp5/BP5Reader.cpp index 67853ba270..687570fa87 100644 --- a/source/adios2/engine/bp5/BP5Reader.cpp +++ b/source/adios2/engine/bp5/BP5Reader.cpp @@ -31,7 +31,7 @@ namespace engine BP5Reader::BP5Reader(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("BP5Reader", io, name, mode, std::move(comm)), m_MDFileManager(io, m_Comm), m_DataFileManager(io, m_Comm), m_MDIndexFileManager(io, m_Comm), - m_FileMetaMetadataManager(io, m_Comm), m_ActiveFlagFileManager(io, m_Comm) + m_FileMetaMetadataManager(io, m_Comm), m_ActiveFlagFileManager(io, m_Comm), m_Remote() { PERFSTUBS_SCOPED_TIMER("BP5Reader::Open"); Init(); @@ -261,6 +261,34 @@ std::pair BP5Reader::ReadData(adios2::transportman::TransportMan } void BP5Reader::PerformGets() +{ + if (m_Remote) + { + PerformRemoteGets(); + } + else + { + PerformLocalGets(); + } + + // clear pending requests inside deserializer + { + std::vector empty; + m_BP5Deserializer->FinalizeGets(empty); + } +} + +void BP5Reader::PerformRemoteGets() +{ + // TP startGenerate = NOW(); + auto GetRequests = m_BP5Deserializer->PendingGetRequests; + for (auto &Req : GetRequests) + { + m_Remote.Get(Req.VarName, Req.RelStep, Req.BlockID, Req.Count, Req.Start, Req.Data); + } +} + +void BP5Reader::PerformLocalGets() { auto lf_CompareReqSubfile = [&](adios2::format::BP5Deserializer::ReadRequest &r1, adios2::format::BP5Deserializer::ReadRequest &r2) -> bool { @@ -383,13 +411,6 @@ void BP5Reader::PerformGets() m_BP5Deserializer->FinalizeGet(Req, false); } } - - // clear pending requests inside deserializer - { - std::vector empty; - m_BP5Deserializer->FinalizeGets(empty); - } - /*TP end = NOW(); double t1 = DURATION(start, end); double t2 = DURATION(startRead, end); @@ -432,6 +453,17 @@ void BP5Reader::Init() TimePoint timeoutInstant = Now() + timeoutSeconds; OpenFiles(timeoutInstant, pollSeconds, timeoutSeconds); UpdateBuffer(timeoutInstant, pollSeconds / 10, timeoutSeconds); + + // This isn't how we'll trigger remote ops in the end, but a temporary + // solution + if (!m_Parameters.RemoteDataPath.empty()) + { + m_Remote.Open("localhost", 26200, m_Parameters.RemoteDataPath, m_OpenMode); + } + else if (getenv("DoRemote")) + { + m_Remote.Open("localhost", 26200, m_Name, m_OpenMode); + } } void BP5Reader::InitParameters() diff --git a/source/adios2/engine/bp5/BP5Reader.h b/source/adios2/engine/bp5/BP5Reader.h index a2a8e8c58f..7d837184ac 100644 --- a/source/adios2/engine/bp5/BP5Reader.h +++ b/source/adios2/engine/bp5/BP5Reader.h @@ -18,6 +18,7 @@ #include "adios2/helper/adiosComm.h" #include "adios2/helper/adiosRangeFilter.h" #include "adios2/toolkit/format/bp5/BP5Deserializer.h" +#include "adios2/toolkit/remote/Remote.h" #include "adios2/toolkit/transportman/TransportMan.h" #include @@ -92,6 +93,7 @@ class BP5Reader : public BP5Engine, public Engine /* transport manager for managing the active flag file */ transportman::TransportMan m_ActiveFlagFileManager; + Remote m_Remote; bool m_WriterIsActive = true; /** used for per-step reads, TODO: to be moved to BP5Deserializer */ @@ -240,6 +242,10 @@ class BP5Reader : public BP5Engine, public Engine // step -> writermap index (for all steps) std::vector m_WriterMapIndex; + void PerformLocalGets(); + + void PerformRemoteGets(); + void DestructorClose(bool Verbose) noexcept; /* Communicator connecting ranks on each Compute Node. diff --git a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp index 7c9565ed85..cdc84c8cdc 100644 --- a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp +++ b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp @@ -568,7 +568,7 @@ void BP5Deserializer::SetupForStep(size_t Step, size_t WriterCount) } else { - PendingRequests.clear(); + PendingGetRequests.clear(); for (auto RecPair : VarByKey) { @@ -1196,7 +1196,7 @@ bool BP5Deserializer::QueueGet(core::VariableBase &variable, void *DestData) { if (!m_RandomAccessMode) { - return QueueGetSingle(variable, DestData, CurTimestep); + return QueueGetSingle(variable, DestData, CurTimestep, CurTimestep); } else { @@ -1229,7 +1229,7 @@ bool BP5Deserializer::QueueGet(core::VariableBase &variable, void *DestData) if (GetMetadataBase(VarRec, AbsStep, WriterRank)) { // This writer wrote on this timestep - ret = QueueGetSingle(variable, DestData, AbsStep); + ret = QueueGetSingle(variable, DestData, AbsStep, RelStep); size_t increment = variable.TotalSize() * variable.m_ElementSize; DestData = (void *)((char *)DestData + increment); break; @@ -1290,7 +1290,8 @@ void BP5Deserializer::StructQueueReadChecks(core::VariableStruct *variable, BP5V VarRec->ReaderDef = variable->m_ReadStructDefinition; } -bool BP5Deserializer::QueueGetSingle(core::VariableBase &variable, void *DestData, size_t Step) +bool BP5Deserializer::QueueGetSingle(core::VariableBase &variable, void *DestData, size_t AbsStep, + size_t RelStep) { BP5VarRec *VarRec = VarByKey[&variable]; if (variable.m_Type == adios2::DataType::Struct) @@ -1300,10 +1301,10 @@ bool BP5Deserializer::QueueGetSingle(core::VariableBase &variable, void *DestDat if (VarRec->OrigShapeID == ShapeID::GlobalValue) { - const size_t writerCohortSize = WriterCohortSize(Step); + const size_t writerCohortSize = WriterCohortSize(AbsStep); for (size_t WriterRank = 0; WriterRank < writerCohortSize; WriterRank++) { - if (GetSingleValueFromMetadata(variable, VarRec, DestData, Step, WriterRank)) + if (GetSingleValueFromMetadata(variable, VarRec, DestData, AbsStep, WriterRank)) return false; } return false; @@ -1314,7 +1315,7 @@ bool BP5Deserializer::QueueGetSingle(core::VariableBase &variable, void *DestDat for (size_t WriterRank = variable.m_Start[0]; WriterRank < variable.m_Count[0] + variable.m_Start[0]; WriterRank++) { - (void)GetSingleValueFromMetadata(variable, VarRec, DestData, Step, WriterRank); + (void)GetSingleValueFromMetadata(variable, VarRec, DestData, AbsStep, WriterRank); DestData = (char *)DestData + variable.m_ElementSize; // use variable.m_ElementSize // because it's the size in local // memory, VarRec->ElementSize is @@ -1329,20 +1330,23 @@ bool BP5Deserializer::QueueGetSingle(core::VariableBase &variable, void *DestDat { BP5ArrayRequest Req; Req.VarRec = VarRec; + Req.VarName = (char *)variable.m_Name.c_str(); Req.RequestType = Global; - Req.BlockID = variable.m_BlockID; + Req.BlockID = (size_t)-1; Req.Count = variable.m_Count; Req.Start = variable.m_Start; - Req.Step = Step; + Req.Step = AbsStep; + Req.RelStep = RelStep; Req.MemSpace = MemSpace; Req.Data = DestData; - PendingRequests.push_back(Req); + PendingGetRequests.push_back(Req); } else if ((variable.m_SelectionType == adios2::SelectionType::WriteBlock) || (variable.m_ShapeID == ShapeID::LocalArray)) { BP5ArrayRequest Req; Req.VarRec = VarByKey[&variable]; + Req.VarName = (char *)variable.m_Name.c_str(); Req.RequestType = Local; Req.BlockID = variable.m_BlockID; if (variable.m_SelectionType == adios2::SelectionType::BoundingBox) @@ -1352,8 +1356,9 @@ bool BP5Deserializer::QueueGetSingle(core::VariableBase &variable, void *DestDat } Req.Data = DestData; Req.MemSpace = MemSpace; - Req.Step = Step; - PendingRequests.push_back(Req); + Req.Step = AbsStep; + Req.RelStep = RelStep; + PendingGetRequests.push_back(Req); } else { @@ -1447,7 +1452,7 @@ bool BP5Deserializer::IsContiguousTransfer(BP5ArrayRequest *Req, size_t *offsets * involve contiguous blocks, but for now all multimensional * requests are assumed to be non-contiguous. */ - return (Req->VarRec->DimCount == 1); + return (((struct BP5VarRec *)Req->VarRec)->DimCount == 1); } std::vector @@ -1456,18 +1461,19 @@ BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, size_t *max std::vector Ret; *maxReadSize = 0; - for (size_t ReqIndex = 0; ReqIndex < PendingRequests.size(); ReqIndex++) + for (size_t ReqIndex = 0; ReqIndex < PendingGetRequests.size(); ReqIndex++) { - auto Req = &PendingRequests[ReqIndex]; - VariableBase *VB = static_cast(Req->VarRec->Variable); + auto Req = &PendingGetRequests[ReqIndex]; + auto VarRec = (struct BP5VarRec *)Req->VarRec; + VariableBase *VB = static_cast(VarRec->Variable); if (Req->RequestType == Local) { const size_t writerCohortSize = WriterCohortSize(Req->Step); size_t NodeFirstBlock = 0; for (size_t WriterRank = 0; WriterRank < writerCohortSize; WriterRank++) { - MetaArrayRecOperator *writer_meta_base = - (MetaArrayRecOperator *)GetMetadataBase(Req->VarRec, Req->Step, WriterRank); + MetaArrayRecOperator *writer_meta_base = (MetaArrayRecOperator *)GetMetadataBase( + (struct BP5VarRec *)Req->VarRec, Req->Step, WriterRank); if (!writer_meta_base) { continue; // Not writen on this step @@ -1477,7 +1483,7 @@ BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, size_t *max { // block is here size_t NeededBlock = Req->BlockID - NodeFirstBlock; - size_t StartDim = NeededBlock * Req->VarRec->DimCount; + size_t StartDim = NeededBlock * VarRec->DimCount; ReadRequest RR; RR.Timestep = Req->Step; RR.WriterRank = WriterRank; @@ -1489,21 +1495,19 @@ BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, size_t *max IsContiguousTransfer(Req, &writer_meta_base->Offsets[StartDim], &writer_meta_base->Count[StartDim]); RR.ReadLength = - helper::GetDataTypeSize(Req->VarRec->Type) * - CalcBlockLength(Req->VarRec->DimCount, &writer_meta_base->Count[StartDim]); + helper::GetDataTypeSize(VarRec->Type) * + CalcBlockLength(VarRec->DimCount, &writer_meta_base->Count[StartDim]); RR.OffsetInBlock = 0; if (RR.DirectToAppMemory) { RR.DestinationAddr = (char *)Req->Data; if (Req->Start.size() != 0) { - RR.ReadLength = - helper::GetDataTypeSize(Req->VarRec->Type) * - CalcBlockLength(Req->VarRec->DimCount, Req->Count.data()); + RR.ReadLength = helper::GetDataTypeSize(VarRec->Type) * + CalcBlockLength(VarRec->DimCount, Req->Count.data()); /* DirectToAppMemory handles only 1D, so offset calc * is 1D only for the moment */ - RR.StartOffset += - helper::GetDataTypeSize(Req->VarRec->Type) * Req->Start[0]; + RR.StartOffset += helper::GetDataTypeSize(VarRec->Type) * Req->Start[0]; } } else @@ -1530,8 +1534,8 @@ BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, size_t *max const size_t writerCohortSize = WriterCohortSize(Req->Step); for (size_t WriterRank = 0; WriterRank < writerCohortSize; WriterRank++) { - MetaArrayRecOperator *writer_meta_base = - (MetaArrayRecOperator *)GetMetadataBase(Req->VarRec, Req->Step, WriterRank); + MetaArrayRecOperator *writer_meta_base = (MetaArrayRecOperator *)GetMetadataBase( + (struct BP5VarRec *)Req->VarRec, Req->Step, WriterRank); if (!writer_meta_base) continue; // Not writen on this step @@ -1541,14 +1545,14 @@ BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, size_t *max std::array intersectionend; std::array intersectioncount; - size_t StartDim = Block * Req->VarRec->DimCount; - if (IntersectionStartCount(Req->VarRec->DimCount, Req->Start.data(), + size_t StartDim = Block * VarRec->DimCount; + if (IntersectionStartCount(VarRec->DimCount, Req->Start.data(), Req->Count.data(), &writer_meta_base->Offsets[StartDim], &writer_meta_base->Count[StartDim], &intersectionstart[0], &intersectioncount[0])) { - if (Req->VarRec->Operator != NULL) + if (VarRec->Operator != NULL) { // need the whole thing for decompression anyway ReadRequest RR; @@ -1571,24 +1575,22 @@ BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, size_t *max } else { - for (size_t Dim = 0; Dim < Req->VarRec->DimCount; Dim++) + for (size_t Dim = 0; Dim < VarRec->DimCount; Dim++) { intersectionstart[Dim] -= writer_meta_base->Offsets[StartDim + Dim]; } size_t StartOffsetInBlock = - VB->m_ElementSize * LinearIndex(Req->VarRec->DimCount, - &writer_meta_base->Count[StartDim], - &intersectionstart[0], - m_ReaderIsRowMajor); - for (size_t Dim = 0; Dim < Req->VarRec->DimCount; Dim++) + VB->m_ElementSize * + LinearIndex(VarRec->DimCount, &writer_meta_base->Count[StartDim], + &intersectionstart[0], m_ReaderIsRowMajor); + for (size_t Dim = 0; Dim < VarRec->DimCount; Dim++) { intersectionend[Dim] = intersectionstart[Dim] + intersectioncount[Dim] - 1; } size_t EndOffsetInBlock = VB->m_ElementSize * - (LinearIndex(Req->VarRec->DimCount, - &writer_meta_base->Count[StartDim], + (LinearIndex(VarRec->DimCount, &writer_meta_base->Count[StartDim], &intersectionend[0], m_ReaderIsRowMajor) + 1); ReadRequest RR; @@ -1645,15 +1647,15 @@ BP5Deserializer::GenerateReadRequests(const bool doAllocTempBuffers, size_t *max void BP5Deserializer::FinalizeGet(const ReadRequest &Read, const bool freeAddr) { - auto Req = PendingRequests[Read.ReqIndex]; + auto Req = PendingGetRequests[Read.ReqIndex]; // if we could do this, nothing else to do if (Read.DirectToAppMemory) return; - int ElementSize = Req.VarRec->ElementSize; - MetaArrayRec *writer_meta_base = - (MetaArrayRec *)GetMetadataBase(Req.VarRec, Req.Step, Read.WriterRank); + int ElementSize = ((struct BP5VarRec *)Req.VarRec)->ElementSize; + MetaArrayRec *writer_meta_base = (MetaArrayRec *)GetMetadataBase( + ((struct BP5VarRec *)Req.VarRec), Req.Step, Read.WriterRank); size_t *GlobalDimensions = writer_meta_base->Shape; auto DimCount = writer_meta_base->Dims; @@ -1667,10 +1669,10 @@ void BP5Deserializer::FinalizeGet(const ReadRequest &Read, const bool freeAddr) char *IncomingData = Read.DestinationAddr; char *VirtualIncomingData = Read.DestinationAddr - Read.OffsetInBlock; std::vector decompressBuffer; - if (Req.VarRec->Operator != NULL) + if (((struct BP5VarRec *)Req.VarRec)->Operator != NULL) { - size_t DestSize = Req.VarRec->ElementSize; - for (size_t dim = 0; dim < Req.VarRec->DimCount; dim++) + size_t DestSize = ((struct BP5VarRec *)Req.VarRec)->ElementSize; + for (size_t dim = 0; dim < ((struct BP5VarRec *)Req.VarRec)->DimCount; dim++) { DestSize *= writer_meta_base->Count[dim + Read.BlockID * writer_meta_base->Dims]; } @@ -1711,7 +1713,7 @@ void BP5Deserializer::FinalizeGet(const ReadRequest &Read, const bool freeAddr) } } - VariableBase *VB = static_cast(Req.VarRec->Variable); + VariableBase *VB = static_cast(((struct BP5VarRec *)Req.VarRec)->Variable); DimsArray inStart(DimCount, RankOffset); DimsArray inCount(DimCount, RankSize); DimsArray outStart(DimCount, SelOffset); @@ -1790,7 +1792,7 @@ void BP5Deserializer::FinalizeGets(std::vector &Reads) { FinalizeGet(Read, true); } - PendingRequests.clear(); + PendingGetRequests.clear(); } void BP5Deserializer::MapGlobalToLocalIndex(size_t Dims, const size_t *GlobalIndex, @@ -1847,8 +1849,8 @@ int BP5Deserializer::FindOffset(size_t Dims, const size_t *Size, const size_t *I BP5Deserializer::BP5Deserializer(bool WriterIsRowMajor, bool ReaderIsRowMajor, bool RandomAccessMode) -: m_WriterIsRowMajor{WriterIsRowMajor}, m_ReaderIsRowMajor{ReaderIsRowMajor}, - m_RandomAccessMode{RandomAccessMode} +: m_WriterIsRowMajor{WriterIsRowMajor}, m_ReaderIsRowMajor{ReaderIsRowMajor}, m_RandomAccessMode{ + RandomAccessMode} { FMContext Tmp = create_local_FMcontext(); ReaderFFSContext = create_FFSContext_FM(Tmp); diff --git a/source/adios2/toolkit/format/bp5/BP5Deserializer.h b/source/adios2/toolkit/format/bp5/BP5Deserializer.h index aa5de66802..3c6aefa355 100644 --- a/source/adios2/toolkit/format/bp5/BP5Deserializer.h +++ b/source/adios2/toolkit/format/bp5/BP5Deserializer.h @@ -61,7 +61,8 @@ class BP5Deserializer : virtual public BP5Base void SetupForStep(size_t Step, size_t WriterCount); // return from QueueGet is true if a sync is needed to fill the data bool QueueGet(core::VariableBase &variable, void *DestData); - bool QueueGetSingle(core::VariableBase &variable, void *DestData, size_t Step); + bool QueueGetSingle(core::VariableBase &variable, void *DestData, size_t AbsStep, + size_t RelStep); /* generate read requests. return vector of requests AND the size of * the largest allocation block necessary for reading. @@ -87,6 +88,27 @@ class BP5Deserializer : virtual public BP5Base const bool m_ReaderIsRowMajor; core::Engine *m_Engine = NULL; + enum RequestTypeEnum + { + Global = 0, + Local = 1 + }; + + struct BP5ArrayRequest + { + void *VarRec = NULL; + char *VarName; + enum RequestTypeEnum RequestType; + size_t Step; // local operations use absolute steps + size_t RelStep; // preserve Relative Step for remote + size_t BlockID; + Dims Start; + Dims Count; + MemorySpace MemSpace; + void *Data; + }; + std::vector PendingGetRequests; + private: size_t m_VarCount = 0; struct BP5VarRec @@ -207,24 +229,6 @@ class BP5Deserializer : virtual public BP5Base size_t Step, size_t WriterRank); void StructQueueReadChecks(core::VariableStruct *variable, BP5VarRec *VarRec); - enum RequestTypeEnum - { - Global = 0, - Local = 1 - }; - - struct BP5ArrayRequest - { - BP5VarRec *VarRec = NULL; - enum RequestTypeEnum RequestType; - size_t Step; - size_t BlockID; - Dims Start; - Dims Count; - MemorySpace MemSpace; - void *Data; - }; - std::vector PendingRequests; void *GetMetadataBase(BP5VarRec *VarRec, size_t Step, size_t WriterRank) const; bool IsContiguousTransfer(BP5ArrayRequest *Req, size_t *offsets, size_t *count); diff --git a/source/adios2/toolkit/remote/CMakeLists.txt b/source/adios2/toolkit/remote/CMakeLists.txt new file mode 100644 index 0000000000..6062f73c5e --- /dev/null +++ b/source/adios2/toolkit/remote/CMakeLists.txt @@ -0,0 +1,19 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +add_executable(remote_server ./remote_server.cpp remote_common.cpp) + +target_link_libraries(remote_server + PUBLIC EVPath::EVPath + PUBLIC adios2_core adios2sys + PRIVATE adios2::thirdparty::pugixml $<$:shlwapi>) +target_include_directories(remote_server PRIVATE ${PROJECT_BINARY_DIR}) + +set_property(TARGET remote_server PROPERTY OUTPUT_NAME remote_server${ADIOS2_EXECUTABLE_SUFFIX}) +install(TARGETS remote_server EXPORT adios2 + RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} COMPONENT adios2_tools-runtime +) + + diff --git a/source/adios2/toolkit/remote/Remote.cpp b/source/adios2/toolkit/remote/Remote.cpp new file mode 100644 index 0000000000..559c5d3065 --- /dev/null +++ b/source/adios2/toolkit/remote/Remote.cpp @@ -0,0 +1,194 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + */ +#include "Remote.h" +#include "adios2/core/ADIOS.h" +#include "adios2/helper/adiosLog.h" +#include "adios2/helper/adiosString.h" +#include "adios2/helper/adiosSystem.h" + +namespace adios2 +{ + +Remote::Remote() {} + +#ifdef ADIOS2_HAVE_SST +void OpenResponseHandler(CManager cm, CMConnection conn, void *vevent, void *client_data, + attr_list attrs) +{ + RemoteCommon::OpenResponseMsg open_response_msg = + static_cast(vevent); + + void *obj = CMCondition_get_client_data(cm, open_response_msg->OpenResponseCondition); + static_cast(obj)->m_ID = open_response_msg->FileHandle; + CMCondition_signal(cm, open_response_msg->OpenResponseCondition); + return; +}; + +void OpenSimpleResponseHandler(CManager cm, CMConnection conn, void *vevent, void *client_data, + attr_list attrs) +{ + RemoteCommon::OpenSimpleResponseMsg open_response_msg = + static_cast(vevent); + + void *obj = CMCondition_get_client_data(cm, open_response_msg->OpenResponseCondition); + static_cast(obj)->m_ID = open_response_msg->FileHandle; + static_cast(obj)->m_Size = open_response_msg->FileSize; + CMCondition_signal(cm, open_response_msg->OpenResponseCondition); + return; +}; + +void ReadResponseHandler(CManager cm, CMConnection conn, void *vevent, void *client_data, + attr_list attrs) +{ + RemoteCommon::ReadResponseMsg read_response_msg = + static_cast(vevent); + memcpy(read_response_msg->Dest, read_response_msg->ReadData, read_response_msg->Size); + CMCondition_signal(cm, read_response_msg->ReadResponseCondition); + return; +}; + +void Remote::InitCMData() +{ + std::lock_guard lockGuard(m_CMInitMutex); + bool first = true; + ; + auto &CM = CManagerSingleton::Instance(first); + ev_state.cm = CM.m_cm; + RegisterFormats(ev_state); + if (first) + { + CMfork_comm_thread(ev_state.cm); + CMregister_handler(ev_state.OpenResponseFormat, (CMHandlerFunc)OpenResponseHandler, + &ev_state); + CMregister_handler(ev_state.ReadResponseFormat, (CMHandlerFunc)ReadResponseHandler, + &ev_state); + CMregister_handler(ev_state.OpenSimpleResponseFormat, + (CMHandlerFunc)OpenSimpleResponseHandler, &ev_state); + CMregister_handler(ev_state.ReadResponseFormat, (CMHandlerFunc)ReadResponseHandler, + &ev_state); + } +} + +void Remote::Open(const std::string hostname, const int32_t port, const std::string filename, + const Mode mode) +{ + + RemoteCommon::_OpenFileMsg open_msg; + bool first; + InitCMData(); + attr_list contact_list = create_attr_list(); + atom_t CM_IP_PORT = -1; + atom_t CM_IP_HOSTNAME = -1; + CM_IP_HOSTNAME = attr_atom_from_string("IP_HOST"); + CM_IP_PORT = attr_atom_from_string("IP_PORT"); + add_attr(contact_list, CM_IP_HOSTNAME, Attr_String, (attr_value)hostname.c_str()); + add_attr(contact_list, CM_IP_PORT, Attr_Int4, (attr_value)port); + m_conn = CMinitiate_conn(ev_state.cm, contact_list); + if (!m_conn) + return; + + memset(&open_msg, 0, sizeof(open_msg)); + open_msg.FileName = (char *)filename.c_str(); + switch (mode) + { + case Mode::Read: + open_msg.Mode = RemoteCommon::RemoteFileMode::RemoteOpen; + break; + case Mode::ReadRandomAccess: + open_msg.Mode = RemoteCommon::RemoteFileMode::RemoteOpenRandomAccess; + break; + default: + break; + } + open_msg.OpenResponseCondition = CMCondition_get(ev_state.cm, m_conn); + CMCondition_set_client_data(ev_state.cm, open_msg.OpenResponseCondition, (void *)this); + CMwrite(m_conn, ev_state.OpenFileFormat, &open_msg); + CMCondition_wait(ev_state.cm, open_msg.OpenResponseCondition); + m_Active = true; +} + +void Remote::OpenSimpleFile(const std::string hostname, const int32_t port, + const std::string filename) +{ + + RemoteCommon::_OpenSimpleFileMsg open_msg; + InitCMData(); + attr_list contact_list = create_attr_list(); + atom_t CM_IP_PORT = -1; + atom_t CM_IP_HOSTNAME = -1; + CM_IP_HOSTNAME = attr_atom_from_string("IP_HOST"); + CM_IP_PORT = attr_atom_from_string("IP_PORT"); + add_attr(contact_list, CM_IP_HOSTNAME, Attr_String, (attr_value)hostname.c_str()); + add_attr(contact_list, CM_IP_PORT, Attr_Int4, (attr_value)port); + m_conn = CMinitiate_conn(ev_state.cm, contact_list); + if (!m_conn) + return; + + memset(&open_msg, 0, sizeof(open_msg)); + open_msg.FileName = (char *)filename.c_str(); + open_msg.OpenResponseCondition = CMCondition_get(ev_state.cm, m_conn); + CMCondition_set_client_data(ev_state.cm, open_msg.OpenResponseCondition, (void *)this); + CMwrite(m_conn, ev_state.OpenSimpleFileFormat, &open_msg); + CMCondition_wait(ev_state.cm, open_msg.OpenResponseCondition); + m_Active = true; +} + +Remote::GetHandle Remote::Get(char *VarName, size_t Step, size_t BlockID, Dims &Count, Dims &Start, + void *dest) +{ + RemoteCommon::_GetRequestMsg GetMsg; + memset(&GetMsg, 0, sizeof(GetMsg)); + GetMsg.GetResponseCondition = CMCondition_get(ev_state.cm, m_conn); + GetMsg.FileHandle = m_ID; + GetMsg.VarName = VarName; + GetMsg.Step = Step; + GetMsg.BlockID = BlockID; + GetMsg.DimCount = Count.size(); + GetMsg.Count = Count.data(); + GetMsg.Start = Start.data(); + GetMsg.Dest = dest; + CMwrite(m_conn, ev_state.GetRequestFormat, &GetMsg); + CMCondition_wait(ev_state.cm, GetMsg.GetResponseCondition); + return GetMsg.GetResponseCondition; +} + +Remote::GetHandle Remote::Read(size_t Start, size_t Size, void *Dest) +{ + RemoteCommon::_ReadRequestMsg ReadMsg; + memset(&ReadMsg, 0, sizeof(ReadMsg)); + ReadMsg.ReadResponseCondition = CMCondition_get(ev_state.cm, m_conn); + ReadMsg.FileHandle = m_ID; + ReadMsg.Offset = Start; + ReadMsg.Size = Size; + ReadMsg.Dest = Dest; + CMwrite(m_conn, ev_state.ReadRequestFormat, &ReadMsg); + CMCondition_wait(ev_state.cm, ReadMsg.ReadResponseCondition); + return ReadMsg.ReadResponseCondition; +} + +bool Remote::WaitForGet(GetHandle handle) { return CMCondition_wait(ev_state.cm, (int)handle); } +#else + +void Remote::Open(const std::string hostname, const int32_t port, const std::string filename, + const Mode mode){}; + +void Remote::OpenSimpleFile(const std::string hostname, const int32_t port, + const std::string filename){}; + +Remote::GetHandle Remote::Get(char *VarName, size_t Step, size_t BlockID, Dims &Count, Dims &Start, + void *dest) +{ + return static_cast(0); +}; + +bool Remote::WaitForGet(GetHandle handle) { return false; } + +Remote::GetHandle Remote::Read(size_t Start, size_t Size, void *Dest) +{ + return static_cast(0); +}; +#endif +} // end namespace adios2 diff --git a/source/adios2/toolkit/remote/Remote.h b/source/adios2/toolkit/remote/Remote.h new file mode 100644 index 0000000000..0858f0654d --- /dev/null +++ b/source/adios2/toolkit/remote/Remote.h @@ -0,0 +1,109 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + */ + +#ifndef ADIOS2_TOOLKIT_REMOTE_REMOTE_H_ +#define ADIOS2_TOOLKIT_REMOTE_REMOTE_H_ + +/// \cond EXCLUDE_FROM_DOXYGEN +#include +#include +#include +/// \endcond + +#include "adios2/toolkit/profiling/iochrono/IOChrono.h" + +#include "adios2/common/ADIOSConfig.h" + +#ifdef ADIOS2_HAVE_SST +#include "remote_common.h" +#endif + +namespace adios2 +{ +class Remote +{ + +public: + profiling::IOChrono m_Profiler; ///< profiles Open, Write/Read, Close + + /** + * Base constructor that all derived classes pass + * @param type from derived class + * @param comm passed to m_Comm + */ + Remote(); + + explicit operator bool() const { return m_Active; } + + void Open(const std::string hostname, const int32_t port, const std::string filename, + const Mode mode); + + void OpenSimpleFile(const std::string hostname, const int32_t port, const std::string filename); + + typedef int GetHandle; + + GetHandle Get(char *VarName, size_t Step, size_t BlockID, Dims &Count, Dims &Start, void *dest); + + bool WaitForGet(GetHandle handle); + + GetHandle Read(size_t Start, size_t Size, void *Dest); + + int64_t m_ID; + size_t m_Size; + +private: +#ifdef ADIOS2_HAVE_SST + void InitCMData(); + RemoteCommon::Remote_evpath_state ev_state; + CMConnection m_conn; + std::mutex m_CMInitMutex; +#endif + bool m_Active = false; +}; + +class CManagerSingleton +{ +public: +#ifdef ADIOS2_HAVE_SST + CManager m_cm = NULL; +#endif + static CManagerSingleton &Instance(bool &first) + { + // Since it's a static variable, if the class has already been created, + // it won't be created again. + // And it **is** thread-safe in C++11. + static CManagerSingleton myInstance; + static bool internal_first = true; + // Return a reference to our instance. + + first = internal_first; + internal_first = false; + return myInstance; + } + + // delete copy and move constructors and assign operators + CManagerSingleton(CManagerSingleton const &) = delete; // Copy construct + CManagerSingleton(CManagerSingleton &&) = delete; // Move construct + CManagerSingleton &operator=(CManagerSingleton const &) = delete; // Copy assign + CManagerSingleton &operator=(CManagerSingleton &&) = delete; // Move assign + + // Any other public methods. + +protected: +#ifdef ADIOS2_HAVE_SST + CManagerSingleton() { m_cm = CManager_create(); } + + ~CManagerSingleton() { CManager_close(m_cm); } +#else + CManagerSingleton() {} + + ~CManagerSingleton() {} +#endif + // And any other protected methods. +}; + +} // end namespace adios2 + +#endif /* ADIOS2_TOOLKIT_REMOTE_REMOTE_H_ */ diff --git a/source/adios2/toolkit/remote/remote_common.cpp b/source/adios2/toolkit/remote/remote_common.cpp new file mode 100644 index 0000000000..9bb15a55c7 --- /dev/null +++ b/source/adios2/toolkit/remote/remote_common.cpp @@ -0,0 +1,111 @@ +#include "remote_common.h" +#include + +namespace adios2 +{ +namespace RemoteCommon +{ + +FMField OpenFileList[] = {{"OpenResponseCondition", "integer", sizeof(long), + FMOffset(OpenFileMsg, OpenResponseCondition)}, + {"FileName", "string", sizeof(char *), FMOffset(OpenFileMsg, FileName)}, + {"Mode", "integer", sizeof(RemoteFileMode), FMOffset(OpenFileMsg, Mode)}, + {NULL, NULL, 0, 0}}; + +FMStructDescRec OpenFileStructs[] = {{"OpenFile", OpenFileList, sizeof(struct _OpenFileMsg), NULL}, + {NULL, NULL, 0, NULL}}; + +FMField OpenSimpleFileList[] = { + {"OpenResponseCondition", "integer", sizeof(long), + FMOffset(OpenSimpleFileMsg, OpenResponseCondition)}, + {"FileName", "string", sizeof(char *), FMOffset(OpenSimpleFileMsg, FileName)}, + {NULL, NULL, 0, 0}}; + +FMStructDescRec OpenSimpleFileStructs[] = { + {"OpenSimpleFile", OpenSimpleFileList, sizeof(struct _OpenSimpleFileMsg), NULL}, + {NULL, NULL, 0, NULL}}; + +FMField OpenResponseList[] = { + {"OpenResponseCondition", "integer", sizeof(long), + FMOffset(OpenResponseMsg, OpenResponseCondition)}, + {"FileHandle", "integer", sizeof(intptr_t), FMOffset(OpenResponseMsg, FileHandle)}, + {NULL, NULL, 0, 0}}; + +FMStructDescRec OpenResponseStructs[] = { + {"OpenResponse", OpenResponseList, sizeof(struct _OpenResponseMsg), NULL}, + {NULL, NULL, 0, NULL}}; + +FMField OpenSimpleResponseList[] = { + {"OpenResponseCondition", "integer", sizeof(long), + FMOffset(OpenSimpleResponseMsg, OpenResponseCondition)}, + {"FileHandle", "integer", sizeof(intptr_t), FMOffset(OpenSimpleResponseMsg, FileHandle)}, + {"FileSize", "integer", sizeof(size_t), FMOffset(OpenSimpleResponseMsg, FileSize)}, + {"FileContents", "char[FileSize]", sizeof(char), FMOffset(OpenSimpleResponseMsg, FileContents)}, + {NULL, NULL, 0, 0}}; + +FMStructDescRec OpenSimpleResponseStructs[] = { + {"OpenSimpleResponse", OpenSimpleResponseList, sizeof(struct _OpenSimpleResponseMsg), NULL}, + {NULL, NULL, 0, NULL}}; + +FMField GetRequestList[] = { + {"GetResponseCondition", "integer", sizeof(int), FMOffset(GetRequestMsg, GetResponseCondition)}, + {"FileHandle", "integer", sizeof(int64_t), FMOffset(GetRequestMsg, FileHandle)}, + {"RequestType", "integer", sizeof(int), FMOffset(GetRequestMsg, RequestType)}, + {"Step", "integer", sizeof(size_t), FMOffset(GetRequestMsg, Step)}, + {"VarName", "string", sizeof(char *), FMOffset(GetRequestMsg, VarName)}, + {"BlockID", "integer", sizeof(int64_t), FMOffset(GetRequestMsg, BlockID)}, + {"DimCount", "integer", sizeof(size_t), FMOffset(GetRequestMsg, DimCount)}, + {"Count", "integer[DimCount]", sizeof(size_t), FMOffset(GetRequestMsg, Count)}, + {"Start", "integer[DimCount]", sizeof(size_t), FMOffset(GetRequestMsg, Start)}, + {"Dest", "integer", sizeof(size_t), FMOffset(GetRequestMsg, Dest)}, + {NULL, NULL, 0, 0}}; + +FMStructDescRec GetRequestStructs[] = {{"Get", GetRequestList, sizeof(struct _GetRequestMsg), NULL}, + {NULL, NULL, 0, NULL}}; + +FMField ReadRequestList[] = { + {"ReadResponseCondition", "integer", sizeof(long), + FMOffset(ReadRequestMsg, ReadResponseCondition)}, + {"FileHandle", "integer", sizeof(intptr_t), FMOffset(ReadRequestMsg, FileHandle)}, + {"Offset", "integer", sizeof(size_t), FMOffset(ReadRequestMsg, Offset)}, + {"Size", "integer", sizeof(size_t), FMOffset(ReadRequestMsg, Size)}, + {"Dest", "integer", sizeof(void *), FMOffset(ReadRequestMsg, Dest)}, + {NULL, NULL, 0, 0}}; + +FMStructDescRec ReadRequestStructs[] = { + {"Read", ReadRequestList, sizeof(struct _ReadRequestMsg), NULL}, {NULL, NULL, 0, NULL}}; + +FMField ReadResponseList[] = { + {"ReadResponseCondition", "integer", sizeof(long), + FMOffset(ReadResponseMsg, ReadResponseCondition)}, + {"Dest", "integer", sizeof(void *), FMOffset(ReadResponseMsg, Dest)}, + {"Size", "integer", sizeof(size_t), FMOffset(ReadResponseMsg, Size)}, + {"ReadData", "char[Size]", sizeof(char), FMOffset(ReadResponseMsg, ReadData)}, + {NULL, NULL, 0, 0}}; + +FMStructDescRec ReadResponseStructs[] = { + {"ReadResponse", ReadResponseList, sizeof(struct _ReadResponseMsg), NULL}, + {NULL, NULL, 0, NULL}}; + +FMField CloseFileList[] = { + {"FileHandle", "integer", sizeof(intptr_t), FMOffset(CloseFileMsg, FileHandle)}, + {NULL, NULL, 0, 0}}; + +FMStructDescRec CloseFileStructs[] = {{"Close", CloseFileList, sizeof(struct _CloseFileMsg), NULL}, + {NULL, NULL, 0, NULL}}; + +void RegisterFormats(RemoteCommon::Remote_evpath_state &ev_state) +{ + ev_state.OpenFileFormat = CMregister_format(ev_state.cm, RemoteCommon::OpenFileStructs); + ev_state.OpenSimpleFileFormat = + CMregister_format(ev_state.cm, RemoteCommon::OpenSimpleFileStructs); + ev_state.OpenResponseFormat = CMregister_format(ev_state.cm, RemoteCommon::OpenResponseStructs); + ev_state.OpenSimpleResponseFormat = + CMregister_format(ev_state.cm, RemoteCommon::OpenSimpleResponseStructs); + ev_state.GetRequestFormat = CMregister_format(ev_state.cm, RemoteCommon::GetRequestStructs); + ev_state.ReadRequestFormat = CMregister_format(ev_state.cm, RemoteCommon::ReadRequestStructs); + ev_state.ReadResponseFormat = CMregister_format(ev_state.cm, RemoteCommon::ReadResponseStructs); + ev_state.CloseFileFormat = CMregister_format(ev_state.cm, RemoteCommon::CloseFileStructs); +} +} +} diff --git a/source/adios2/toolkit/remote/remote_common.h b/source/adios2/toolkit/remote/remote_common.h new file mode 100644 index 0000000000..81d303f490 --- /dev/null +++ b/source/adios2/toolkit/remote/remote_common.h @@ -0,0 +1,118 @@ +#include "evpath.h" +#include + +namespace adios2 +{ +namespace RemoteCommon +{ + +enum RemoteFileMode +{ + RemoteOpen, + RemoteOpenRandomAccess, +}; +/* + */ +typedef struct _OpenFileMsg +{ + int OpenResponseCondition; + char *FileName; + RemoteFileMode Mode; +} *OpenFileMsg; + +typedef struct _OpenResponseMsg +{ + int OpenResponseCondition; + int64_t FileHandle; +} *OpenResponseMsg; + +typedef struct _OpenSimpleFileMsg +{ + int OpenResponseCondition; + char *FileName; +} *OpenSimpleFileMsg; + +typedef struct _OpenSimpleResponseMsg +{ + int OpenResponseCondition; + int64_t FileHandle; + size_t FileSize; // may be used for Contents size + char *FileContents; // used for OpenReadComplete mode +} *OpenSimpleResponseMsg; + +/* + */ +typedef struct _GetRequestMsg +{ + int GetResponseCondition; + int RequestType; + int64_t FileHandle; + char *VarName; + size_t Step; + int64_t BlockID; + int DimCount; + size_t *Count; + size_t *Start; + void *Dest; +} *GetRequestMsg; + +/* + */ +typedef struct _ReadRequestMsg +{ + int ReadResponseCondition; + int64_t FileHandle; + size_t Offset; + size_t Size; + void *Dest; +} *ReadRequestMsg; + +/* + * Reader register messages are sent from reader rank 0 to writer rank 0 + * They contain basic info, plus contact information for each reader rank + */ +typedef struct _ReadResponseMsg +{ + int ReadResponseCondition; + void *Dest; + size_t Size; + char *ReadData; +} *ReadResponseMsg; + +/* + */ +typedef struct _CloseFileMsg +{ + void *FileHandle; +} *CloseFileMsg; + +enum VerbosityLevel +{ + NoVerbose = 0, // Generally no output (but not absolutely quiet?) + CriticalVerbose = 1, // Informational output for failures only + SummaryVerbose = 2, // One-time summary output containing general info (transports used, + // timestep count, stream duration, etc.) + PerStepVerbose = 3, // One-per-step info, generally from rank 0 (metadata + // read, Begin/EndStep verbosity, etc.) + PerRankVerbose = 4, // Per-step info from each rank (for those things that + // might be different per rank). + TraceVerbose = 5, // All debugging available +}; + +struct Remote_evpath_state +{ + CManager cm; + CMFormat OpenFileFormat; + CMFormat OpenSimpleFileFormat; + CMFormat OpenResponseFormat; + CMFormat OpenSimpleResponseFormat; + CMFormat GetRequestFormat; + CMFormat ReadRequestFormat; + CMFormat ReadResponseFormat; + CMFormat CloseFileFormat; +}; + +void RegisterFormats(struct Remote_evpath_state &ev_state); + +}; // end of namespace remote_common +}; // end of namespace adios2 diff --git a/source/adios2/toolkit/remote/remote_server.cpp b/source/adios2/toolkit/remote/remote_server.cpp new file mode 100644 index 0000000000..e3c556cba2 --- /dev/null +++ b/source/adios2/toolkit/remote/remote_server.cpp @@ -0,0 +1,352 @@ +#include +#include + +#include "adios2/common/ADIOSConfig.h" +#include "adios2/common/ADIOSMacros.h" +#include "adios2/common/ADIOSTypes.h" +#include "adios2/core/ADIOS.h" +#include "adios2/core/Engine.h" +#include "adios2/core/IO.h" +#include "adios2/core/Variable.h" +#include "adios2/helper/adiosFunctions.h" +#include + +#include // remove +#include // strerror +#include // errno +#include // open +#include +#include // open, fstat +#include // open +#include // write, close, ftruncate + +#include "remote_common.h" + +using namespace adios2::RemoteCommon; + +using namespace adios2::core; +using namespace adios2; + +int verbose = 1; +ADIOS adios("C++"); + +std::string readable_size(uint64_t size) +{ + constexpr const char FILE_SIZE_UNITS[8][3]{"B ", "KB", "MB", "GB", "TB", "PB", "EB", "ZB"}; + uint64_t s = size, r = 0; + int idx = 0; + while (s / 1024 > 0) + { + r = s % 1024; + s = s / 1024; + idx++; + } + int point = r / 100; + std::ostringstream out; + out << "" << s; + if (point != 0) + out << "." << point; + out << " " << std::string(FILE_SIZE_UNITS[idx]); + return out.str(); +} + +std::string lf_random_string() +{ + std::string str("0123456789ABCDEFGHIJKLMNOPQRSTUVWXYZabcdefghijklmnopqrstuvwxyz"); + + std::random_device rd; + std::mt19937 generator(rd()); + + std::shuffle(str.begin(), str.end(), generator); + + return str.substr(0, 8); +} + +class AnonADIOSFile +{ +public: + IO *m_io = NULL; + Engine *m_engine = NULL; + int64_t m_ID; + int64_t currentStep = -1; + std::string m_IOname; + std::string m_FileName; + size_t m_BytesSent = 0; + size_t m_OperationCount = 0; + RemoteFileMode m_mode = RemoteCommon::RemoteFileMode::RemoteOpen; + AnonADIOSFile(std::string FileName, RemoteCommon::RemoteFileMode mode) + { + Mode adios_read_mode = adios2::Mode::Read; + m_FileName = FileName; + m_IOname = lf_random_string(); + m_io = &adios.DeclareIO(m_IOname); + m_mode = mode; + if (m_mode == RemoteOpenRandomAccess) + adios_read_mode = adios2::Mode::ReadRandomAccess; + m_engine = &m_io->Open(FileName, adios_read_mode); + memcpy(&m_ID, m_IOname.c_str(), sizeof(m_ID)); + } + ~AnonADIOSFile() + { + m_engine->Close(); + adios.RemoveIO(m_IOname); + } +}; + +class AnonSimpleFile +{ +public: + int64_t m_ID; + int m_FileDescriptor; + int m_Errno = 0; + size_t m_Size = -1; + size_t m_CurrentOffset = 0; + std::string m_FileName; + size_t m_BytesSent = 0; + size_t m_OperationCount = 0; + AnonSimpleFile(std::string FileName) + { + m_FileName = FileName; + std::string tmpname = lf_random_string(); + struct stat fileStat; + + memcpy(&m_ID, tmpname.c_str(), sizeof(m_ID)); + errno = 0; + m_FileDescriptor = open(FileName.c_str(), O_RDONLY); + m_Errno = errno; + if (fstat(m_FileDescriptor, &fileStat) == -1) + { + m_Errno = errno; + } + m_Size = static_cast(fileStat.st_size); + } + ~AnonSimpleFile() { close(m_FileDescriptor); } +}; + +std::unordered_map ADIOSFileMap; +std::unordered_map SimpleFileMap; +std::unordered_multimap ConnToFileMap; + +static void ConnCloseHandler(CManager cm, CMConnection conn, void *client_data) +{ + auto it = ConnToFileMap.equal_range(conn); + for (auto it1 = it.first; it1 != it.second; it1++) + { + AnonADIOSFile *file = ADIOSFileMap[it1->second]; + if (file) + { + if (verbose >= 1) + std::cout << "closing ADIOS file \"" << file->m_FileName << "\" total sent " + << readable_size(file->m_BytesSent) << " in " << file->m_OperationCount + << " Get()s" << std::endl; + ADIOSFileMap.erase(it1->second); + delete file; + } + AnonSimpleFile *sfile = SimpleFileMap[it1->second]; + if (sfile) + { + if (verbose >= 1) + std::cout << "closing simple file " << sfile->m_FileName << "\" total sent " + << readable_size(sfile->m_BytesSent) << " in " << sfile->m_OperationCount + << " Read()s" << std::endl; + SimpleFileMap.erase(it1->second); + delete file; + } + } + ConnToFileMap.erase(conn); +} + +static void OpenHandler(CManager cm, CMConnection conn, void *vevent, void *client_data, + attr_list attrs) +{ + OpenFileMsg open_msg = static_cast(vevent); + struct Remote_evpath_state *ev_state = static_cast(client_data); + _OpenResponseMsg open_response_msg; + std::cout << "Got an open request for file " << open_msg->FileName << std::endl; + AnonADIOSFile *f = new AnonADIOSFile(open_msg->FileName, open_msg->Mode); + memset(&open_response_msg, 0, sizeof(open_response_msg)); + open_response_msg.FileHandle = f->m_ID; + open_response_msg.OpenResponseCondition = open_msg->OpenResponseCondition; + CMwrite(conn, ev_state->OpenResponseFormat, &open_response_msg); + CMconn_register_close_handler(conn, ConnCloseHandler, NULL); + ADIOSFileMap[f->m_ID] = f; + ConnToFileMap.emplace(conn, f->m_ID); +} + +static void OpenSimpleHandler(CManager cm, CMConnection conn, void *vevent, void *client_data, + attr_list attrs) +{ + OpenSimpleFileMsg open_msg = static_cast(vevent); + struct Remote_evpath_state *ev_state = static_cast(client_data); + _OpenSimpleResponseMsg open_response_msg; + std::cout << "Got an open simple request for file " << open_msg->FileName << std::endl; + AnonSimpleFile *f = new AnonSimpleFile(open_msg->FileName); + f->m_FileName = open_msg->FileName; + memset(&open_response_msg, 0, sizeof(open_response_msg)); + open_response_msg.FileHandle = f->m_ID; + open_response_msg.FileSize = f->m_Size; + open_response_msg.OpenResponseCondition = open_msg->OpenResponseCondition; + + CMwrite(conn, ev_state->OpenSimpleResponseFormat, &open_response_msg); + CMconn_register_close_handler(conn, ConnCloseHandler, NULL); + SimpleFileMap[f->m_ID] = f; + ConnToFileMap.emplace(conn, f->m_ID); +} + +static void GetRequestHandler(CManager cm, CMConnection conn, void *vevent, void *client_data, + attr_list attrs) +{ + GetRequestMsg GetMsg = static_cast(vevent); + AnonADIOSFile *f = ADIOSFileMap[GetMsg->FileHandle]; + struct Remote_evpath_state *ev_state = static_cast(client_data); + if (f->m_mode == RemoteOpen) + { + if (f->currentStep == -1) + { + f->m_engine->BeginStep(); + f->currentStep++; + } + while (f->m_engine->CurrentStep() < GetMsg->Step) + { + if (verbose >= 2) + std::cout << "Advancing a step" << std::endl; + f->m_engine->EndStep(); + f->m_engine->BeginStep(); + f->currentStep++; + } + } + + std::string VarName = std::string(GetMsg->VarName); + adios2::DataType TypeOfVar = f->m_io->InquireVariableType(VarName); + Box b; + if (GetMsg->Count) + { + for (int i = 0; i < GetMsg->DimCount; i++) + { + b.first.push_back(GetMsg->Start[i]); + b.second.push_back(GetMsg->Count[i]); + } + } + + if (TypeOfVar == adios2::DataType::None) + { + } +#define GET(T) \ + else if (TypeOfVar == helper::GetDataType()) \ + { \ + _ReadResponseMsg Response; \ + memset(&Response, 0, sizeof(Response)); \ + std::vector RetData; \ + auto var = f->m_io->InquireVariable(VarName); \ + if (f->m_mode == RemoteOpenRandomAccess) \ + var->SetStepSelection({GetMsg->Step, 1}); \ + if (GetMsg->BlockID != -1) \ + var->SetBlockSelection(GetMsg->BlockID); \ + if (GetMsg->Start) \ + var->SetSelection(b); \ + f->m_engine->Get(*var, RetData, Mode::Sync); \ + Response.Size = RetData.size() * sizeof(T); \ + Response.ReadData = (char *)RetData.data(); \ + Response.ReadResponseCondition = GetMsg->GetResponseCondition; \ + Response.Dest = GetMsg->Dest; /* final data destination in client memory space */ \ + if (verbose >= 2) \ + std::cout << "Returning " << Response.Size << " " << readable_size(Response.Size) \ + << " for Get<" << TypeOfVar << ">(" << VarName << ")" << b << std::endl; \ + f->m_BytesSent += Response.Size; \ + f->m_OperationCount++; \ + CMwrite(conn, ev_state->ReadResponseFormat, &Response); \ + } + ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(GET) +#undef GET +} + +static void ReadRequestHandler(CManager cm, CMConnection conn, void *vevent, void *client_data, + attr_list attrs) +{ + ReadRequestMsg ReadMsg = static_cast(vevent); + AnonSimpleFile *f = SimpleFileMap[ReadMsg->FileHandle]; + struct Remote_evpath_state *ev_state = static_cast(client_data); + if (f->m_CurrentOffset != ReadMsg->Offset) + { + lseek(f->m_FileDescriptor, ReadMsg->Offset, SEEK_SET); + f->m_CurrentOffset = ReadMsg->Offset; + } + char *tmp = (char *)malloc(ReadMsg->Size); + read(f->m_FileDescriptor, tmp, ReadMsg->Size); + f->m_CurrentOffset += ReadMsg->Size; + _ReadResponseMsg Response; + memset(&Response, 0, sizeof(Response)); + Response.Size = ReadMsg->Size; + Response.ReadData = (char *)tmp; + Response.ReadResponseCondition = ReadMsg->ReadResponseCondition; + Response.Dest = ReadMsg->Dest; + if (verbose >= 2) + std::cout << "Returning " << readable_size(Response.Size) << " for Read " << std::endl; + f->m_BytesSent += Response.Size; + f->m_OperationCount++; + CMwrite(conn, ev_state->ReadResponseFormat, &Response); + free(tmp); +} + +void REVPServerRegisterHandlers(struct Remote_evpath_state &ev_state) +{ + CMregister_handler(ev_state.OpenFileFormat, OpenHandler, &ev_state); + CMregister_handler(ev_state.OpenSimpleFileFormat, OpenSimpleHandler, &ev_state); + CMregister_handler(ev_state.GetRequestFormat, GetRequestHandler, &ev_state); + CMregister_handler(ev_state.ReadRequestFormat, ReadRequestHandler, &ev_state); +} + +static atom_t CM_IP_PORT = -1; +const int ServerPort = 26200; +int main(int argc, char **argv) +{ + CManager cm; + struct Remote_evpath_state ev_state; + + (void)argc; + (void)argv; + cm = CManager_create(); + CM_IP_PORT = attr_atom_from_string("IP_PORT"); + attr_list listen_list = NULL; + + if (listen_list == NULL) + listen_list = create_attr_list(); + add_attr(listen_list, CM_IP_PORT, Attr_Int4, (attr_value)ServerPort); + CMlisten_specific(cm, listen_list); + + attr_list contact_list = CMget_contact_list(cm); + if (contact_list) + { + char *string_list = attr_list_to_string(contact_list); + std::cout << "Listening at port " << ServerPort << std::endl; + free(string_list); + } + ev_state.cm = cm; + + while (argv[1] && (argv[1][0] == '-')) + { + size_t i = 1; + while (argv[1][i] != 0) + { + if (argv[1][i] == 'v') + { + verbose++; + } + else if (argv[1][i] == 'q') + { + verbose--; + } + i++; + } + argv++; + argc--; + } + + RegisterFormats(ev_state); + + REVPServerRegisterHandlers(ev_state); + + std::cout << "doing Run Network" << std::endl; + CMrun_network(cm); + return 0; +} diff --git a/source/adios2/toolkit/transportman/TransportMan.cpp b/source/adios2/toolkit/transportman/TransportMan.cpp index 59d3033f5d..4757495ea7 100644 --- a/source/adios2/toolkit/transportman/TransportMan.cpp +++ b/source/adios2/toolkit/transportman/TransportMan.cpp @@ -23,6 +23,9 @@ #ifdef ADIOS2_HAVE_DAOS #include "adios2/toolkit/transport/file/FileDaos.h" #endif +#ifdef ADIOS2_HAVE_SST +#include "adios2/toolkit/transport/file/FileRemote.h" +#endif #ifdef ADIOS2_HAVE_IME #include "adios2/toolkit/transport/file/FileIME.h" #endif @@ -574,6 +577,18 @@ std::shared_ptr TransportMan::OpenFileTransport(const std::string &fi } } #endif +#ifdef ADIOS2_HAVE_SST + else if (library == "remote") + { + transport = std::make_shared(m_Comm); + if (lf_GetBuffered("false")) + { + helper::Throw( + "Toolkit", "TransportMan", "OpenFileTransport", + library + " transport does not support buffered I/O."); + } + } +#endif #ifdef ADIOS2_HAVE_IME else if (library == "ime") { @@ -632,7 +647,10 @@ std::shared_ptr TransportMan::OpenFileTransport(const std::string &fi // BODY OF FUNCTION starts here std::shared_ptr transport; const std::string library = helper::LowerCase(lf_GetLibrary(DefaultFileLibrary, parameters)); - lf_SetFileTransport(library, transport); + if (getenv("DoFileRemote") && (openMode == Mode::Read)) + lf_SetFileTransport("remote", transport); + else + lf_SetFileTransport(library, transport); // Default or user ProfileUnits in parameters if (profile) From dec07203f3d7900853c3c2091d712dcd1461ab53 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Fri, 4 Aug 2023 15:54:58 -0400 Subject: [PATCH 073/183] clang-format v16 --- source/adios2/toolkit/format/bp5/BP5Deserializer.cpp | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp index cdc84c8cdc..93f5eb686b 100644 --- a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp +++ b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp @@ -1849,8 +1849,8 @@ int BP5Deserializer::FindOffset(size_t Dims, const size_t *Size, const size_t *I BP5Deserializer::BP5Deserializer(bool WriterIsRowMajor, bool ReaderIsRowMajor, bool RandomAccessMode) -: m_WriterIsRowMajor{WriterIsRowMajor}, m_ReaderIsRowMajor{ReaderIsRowMajor}, m_RandomAccessMode{ - RandomAccessMode} +: m_WriterIsRowMajor{WriterIsRowMajor}, m_ReaderIsRowMajor{ReaderIsRowMajor}, + m_RandomAccessMode{RandomAccessMode} { FMContext Tmp = create_local_FMcontext(); ReaderFFSContext = create_FFSContext_FM(Tmp); From 17efbb6fda582a9500910a32f03a5829d0c0435e Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Fri, 4 Aug 2023 16:11:04 -0400 Subject: [PATCH 074/183] FileRemote --- .../toolkit/transport/file/FileRemote.cpp | 230 ++++++++++++++++++ .../toolkit/transport/file/FileRemote.h | 96 ++++++++ 2 files changed, 326 insertions(+) create mode 100644 source/adios2/toolkit/transport/file/FileRemote.cpp create mode 100644 source/adios2/toolkit/transport/file/FileRemote.h diff --git a/source/adios2/toolkit/transport/file/FileRemote.cpp b/source/adios2/toolkit/transport/file/FileRemote.cpp new file mode 100644 index 0000000000..b65a1e084b --- /dev/null +++ b/source/adios2/toolkit/transport/file/FileRemote.cpp @@ -0,0 +1,230 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + */ +#include "FileRemote.h" +#include "adios2/core/ADIOS.h" +#include "adios2/helper/adiosLog.h" +#include "adios2/helper/adiosString.h" +#include "adios2/helper/adiosSystem.h" + +#include // remove +#include // strerror +#include // errno +#include // open +#include +#include // open, fstat +#include // open +#include // write, close, ftruncate + +namespace adios2 +{ +namespace transport +{ + +FileRemote::FileRemote(helper::Comm const &comm) +: Transport("File", "Remote", comm) /*, m_Impl(&m_ImplSingleton)*/ +{ +} + +FileRemote::~FileRemote() +{ + if (m_IsOpen) + { + Close(); + } +} + +void FileRemote::SetParameters(const Params ¶ms) +{ + // Parameters are set from config parameters if present + // Otherwise, they are set from environment if present + // Otherwise, they remain at their default value + + helper::SetParameterValue("cache", params, m_CachePath); + if (m_CachePath.empty()) + { + if (const char *Env = std::getenv("AWS_CACHE")) + { + m_CachePath = std::string(Env); + } + } +} + +void FileRemote::WaitForOpen() {} + +void FileRemote::SetUpCache() +{ + if (!m_CachePath.empty()) + { + if (helper::EndsWith(m_FileName, "md.idx") || helper::EndsWith(m_FileName, "md.0") || + helper::EndsWith(m_FileName, "mmd.0")) + { + m_CachingThisFile = true; + } + } + + if (m_CachingThisFile) + { + } +} + +void FileRemote::Open(const std::string &name, const Mode openMode, const bool async, + const bool directio) +{ + m_Name = name; + size_t pos = name.find(PathSeparator); + if (pos == std::string::npos) + { + helper::Throw("Toolkit", "transport::file::FileRemote", "Open", + "invalid 'bucket/object' name " + name); + } + m_OpenMode = openMode; + switch (m_OpenMode) + { + + case Mode::Write: + case Mode::Append: + helper::Throw("Toolkit", "transport::file::FileRemote", "Open", + "does not support writing yet " + m_Name); + break; + + case Mode::Read: { + ProfilerStart("open"); + m_Remote.OpenSimpleFile("localhost", 26200, m_Name); + ProfilerStop("open"); + m_Size = m_Remote.m_Size; + break; + } + default: + CheckFile("unknown open mode for file " + m_Name + ", in call to Remote open"); + } +} + +void FileRemote::OpenChain(const std::string &name, Mode openMode, const helper::Comm &chainComm, + const bool async, const bool directio) +{ + int token = 1; + if (chainComm.Rank() > 0) + { + chainComm.Recv(&token, 1, chainComm.Rank() - 1, 0, "Chain token in FileRemote::OpenChain"); + } + + Open(name, openMode, async, directio); + + if (chainComm.Rank() < chainComm.Size() - 1) + { + chainComm.Isend(&token, 1, chainComm.Rank() + 1, 0, + "Sending Chain token in FileRemote::OpenChain"); + } +} + +void FileRemote::Write(const char *buffer, size_t size, size_t start) +{ + helper::Throw("Toolkit", "transport::file::FileRemote", "Write", + "does not support writing yet " + m_Name); +} + +void FileRemote::Read(char *buffer, size_t size, size_t start) +{ + WaitForOpen(); + + if (start != MaxSizeT) + { + if (start >= m_Size) + { + helper::Throw( + "Toolkit", "transport::file::FileRemote", "Read", + "couldn't move to start position " + std::to_string(start) + + " beyond the size of " + m_Name + " which is " + std::to_string(m_Size)); + } + m_SeekPos = start; + errno = 0; + m_Errno = errno; + } + + if (m_SeekPos + size > m_Size) + { + helper::Throw("Toolkit", "transport::file::FileRemote", "Read", + "can't read " + std::to_string(size) + + " bytes from position " + + std::to_string(m_SeekPos) + " from " + m_Name + + " whose size is " + std::to_string(m_Size)); + } + + m_Remote.Read(start, size, buffer); + if (m_IsCached) + { + } +} + +size_t FileRemote::GetSize() +{ + WaitForOpen(); + switch (m_OpenMode) + { + case Mode::Write: + case Mode::Append: + return 0; + case Mode::Read: + return m_Size; + default: + return 0; + } +} + +void FileRemote::Flush() {} + +void FileRemote::Close() +{ + WaitForOpen(); + ProfilerStart("close"); + errno = 0; + m_Errno = errno; + if (m_IsCached) + { + } + + m_IsOpen = false; + ProfilerStop("close"); +} + +void FileRemote::Delete() +{ + WaitForOpen(); + if (m_IsOpen) + { + Close(); + } + std::remove(m_Name.c_str()); +} + +void FileRemote::CheckFile(const std::string hint) const {} + +void FileRemote::SeekToEnd() { m_SeekPos = MaxSizeT; } + +void FileRemote::SeekToBegin() { m_SeekPos = 0; } + +void FileRemote::Seek(const size_t start) +{ + if (start != MaxSizeT) + { + m_SeekPos = start; + } + else + { + SeekToEnd(); + } +} + +void FileRemote::Truncate(const size_t length) +{ + helper::Throw("Toolkit", "transport::file::FileRemote", "Truncate", + "does not support truncating " + m_Name); +} + +void FileRemote::MkDir(const std::string &fileName) {} + +} // end namespace transport +} // end namespace adios2 diff --git a/source/adios2/toolkit/transport/file/FileRemote.h b/source/adios2/toolkit/transport/file/FileRemote.h new file mode 100644 index 0000000000..27c1a73d70 --- /dev/null +++ b/source/adios2/toolkit/transport/file/FileRemote.h @@ -0,0 +1,96 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + */ + +#ifndef ADIOS2_TOOLKIT_TRANSPORT_FILE_Remote_H_ +#define ADIOS2_TOOLKIT_TRANSPORT_FILE_Remote_H_ + +#include //std::async, std::future + +#include "adios2/common/ADIOSConfig.h" +#include "adios2/toolkit/remote/Remote.h" +#include "adios2/toolkit/transport/Transport.h" + +#include +namespace adios2 +{ +namespace helper +{ +class Comm; +} +namespace transport +{ + +/** File descriptor transport using the AWSSDK IO library */ +class FileRemote : public Transport +{ + +public: + FileRemote(helper::Comm const &comm); + + ~FileRemote(); + + void SetParameters(const Params ¶meters); + + void Open(const std::string &name, const Mode openMode, const bool async = false, + const bool directio = false) final; + + void OpenChain(const std::string &name, Mode openMode, const helper::Comm &chainComm, + const bool async = false, const bool directio = false) final; + + void Write(const char *buffer, size_t size, size_t start = MaxSizeT) final; + +#ifdef REALLY_WANT_WRITEV + /* Actual writev() function, inactive for now */ + void WriteV(const core::iovec *iov, const int iovcnt, size_t start = MaxSizeT) final; +#endif + + void Read(char *buffer, size_t size, size_t start = MaxSizeT) final; + + size_t GetSize() final; + + /** Does nothing, each write is supposed to flush */ + void Flush() final; + + void Close() final; + + void Delete() final; + + void SeekToEnd() final; + + void SeekToBegin() final; + + void Seek(const size_t start = MaxSizeT) final; + + void Truncate(const size_t length) final; + + void MkDir(const std::string &fileName) final; + +private: + // class Impl; + // static class Impl m_ImplSingleton; + // Impl *m_Impl; + // std::unique_ptr m_Impl; + Remote m_Remote; + int m_Errno = 0; + bool m_IsOpening = false; + std::future m_OpenFuture; + size_t m_SeekPos = 0; + size_t m_Size = 0; + + void SetUpCache(); + std::string m_FileName; + std::string m_CachePath; // local cache directory + bool m_CachingThisFile = false; // save content to local cache + bool m_IsCached = false; // true if file is already in cache + void CheckFile(const std::string hint) const; + void WaitForOpen(); + std::string SysErrMsg() const; +}; + +} // end namespace transport +} // end namespace adios2 + +#endif /* ADIOS2_TRANSPORT_FILE_Remote_H_ */ From 1f5770f9d2defec588d6e5097d950ce0d6b9df37 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Fri, 4 Aug 2023 16:19:21 -0400 Subject: [PATCH 075/183] unused --- source/adios2/toolkit/remote/Remote.cpp | 2 -- 1 file changed, 2 deletions(-) diff --git a/source/adios2/toolkit/remote/Remote.cpp b/source/adios2/toolkit/remote/Remote.cpp index 559c5d3065..9f8937e1aa 100644 --- a/source/adios2/toolkit/remote/Remote.cpp +++ b/source/adios2/toolkit/remote/Remote.cpp @@ -54,7 +54,6 @@ void Remote::InitCMData() { std::lock_guard lockGuard(m_CMInitMutex); bool first = true; - ; auto &CM = CManagerSingleton::Instance(first); ev_state.cm = CM.m_cm; RegisterFormats(ev_state); @@ -77,7 +76,6 @@ void Remote::Open(const std::string hostname, const int32_t port, const std::str { RemoteCommon::_OpenFileMsg open_msg; - bool first; InitCMData(); attr_list contact_list = create_attr_list(); atom_t CM_IP_PORT = -1; From 8ede257c04144d78b922a920b72cd4cda62955af Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Fri, 4 Aug 2023 16:41:03 -0400 Subject: [PATCH 076/183] size_t --- source/adios2/toolkit/remote/remote_server.cpp | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/source/adios2/toolkit/remote/remote_server.cpp b/source/adios2/toolkit/remote/remote_server.cpp index e3c556cba2..9d640017f4 100644 --- a/source/adios2/toolkit/remote/remote_server.cpp +++ b/source/adios2/toolkit/remote/remote_server.cpp @@ -99,7 +99,7 @@ class AnonSimpleFile int64_t m_ID; int m_FileDescriptor; int m_Errno = 0; - size_t m_Size = -1; + size_t m_Size = (size_t)-1; size_t m_CurrentOffset = 0; std::string m_FileName; size_t m_BytesSent = 0; From 93dbcacc0f55960cd66343f6dee503976881584d Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Mon, 7 Aug 2023 12:58:09 -0400 Subject: [PATCH 077/183] readthedocs: build current ADIOS2 - Solely use Conda to install deps --- docs/environment.yml | 13 ++++++------- docs/requirements.txt | 44 ------------------------------------------- readthedocs.yml | 13 +++++++++---- 3 files changed, 15 insertions(+), 55 deletions(-) delete mode 100644 docs/requirements.txt diff --git a/docs/environment.yml b/docs/environment.yml index 998a6d65b4..20b0939ac2 100644 --- a/docs/environment.yml +++ b/docs/environment.yml @@ -2,17 +2,16 @@ name: adios2-python-docs channels: - conda-forge - - williamfgc dependencies: - - adios2-openmpi - - breathe==4.33.0 + - breathe==4.35.0 + - cmake - docutils==0.17 - - python - - sphinx=4 -# - funcparserlib>=0.3.6 + - libpython-static + - numpy - pip + - sphinx=5.3 - pip: - blockdiag==3.0.0 - sphinxcontrib-blockdiag==3.0.0 - - sphinx_rtd_theme==1.0.0 + - sphinx_rtd_theme==1.1.1 diff --git a/docs/requirements.txt b/docs/requirements.txt deleted file mode 100644 index 846a653114..0000000000 --- a/docs/requirements.txt +++ /dev/null @@ -1,44 +0,0 @@ -alabaster==0.7.12 -Babel==2.11.0 -blockdiag==3.0.0 -breathe==4.33.0 -brotlipy==0.7.0 -certifi==2023.7.22 -cffi==1.15.1 -charset-normalizer==2.1.1 -colorama==0.4.6 -cryptography==41.0.3 -docutils==0.17 -funcparserlib==1.0.1 -idna==3.4 -imagesize==1.4.1 -importlib-metadata==4.11.4 -Jinja2==3.1.2 -MarkupSafe==2.1.1 -mpi4py==3.1.3 -numpy==1.22.0 -packaging==22.0 -Pillow==9.4.0 -pip==22.3.1 -pycparser==2.21 -Pygments==2.15.0 -pyOpenSSL==23.0.0 -PySocks==1.7.1 -pytz==2022.7 -requests==2.31.0 -setuptools==65.6.3 -snowballstemmer==2.2.0 -Sphinx==4.5.0 -sphinx-rtd-theme==1.0.0 -sphinxcontrib-applehelp==1.0.2 -sphinxcontrib-blockdiag==3.0.0 -sphinxcontrib-devhelp==1.0.2 -sphinxcontrib-htmlhelp==2.0.0 -sphinxcontrib-jsmath==1.0.1 -sphinxcontrib-qthelp==1.0.3 -sphinxcontrib-serializinghtml==1.1.5 -typing_extensions==4.4.0 -urllib3==1.26.13 -webcolors==1.12 -wheel==0.38.4 -zipp==3.11.0 diff --git a/readthedocs.yml b/readthedocs.yml index b2faeb48a6..e3981630cc 100644 --- a/readthedocs.yml +++ b/readthedocs.yml @@ -4,10 +4,15 @@ version: 2 conda: environment: docs/environment.yml -python: - version: 3.7 - system_packages: true - +build: + os: "ubuntu-22.04" + tools: + python: "miniconda3-4.7" + jobs: + pre_install: + - cmake -B build -S . -DADIOS2_USE_PYTHON=ON -DBUILD_TESTING=OFF -DADIOS2_BUILD_EXAMPLES=OFF + - cmake --build build + - cmake --install build --prefix "$HOME/.local" formats: - pdf - epub From 8333d5e6ff4665d12cbbd5bae5150bfff5be2daa Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Thu, 10 Aug 2023 18:19:27 -0400 Subject: [PATCH 078/183] cmake: Add Blosc2 2.10.1 compatibility. - Give priority to Blosc2Config.cmake file rather than FindBlosc2.cmake. - Prefer shared Blosc2 library. Co-Authored-By: Axel Huebl --- CMakeLists.txt | 2 ++ cmake/DetectOptions.cmake | 25 ++++++++++++++++++++++--- source/adios2/CMakeLists.txt | 6 ++++-- 3 files changed, 28 insertions(+), 5 deletions(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index ad70e1817b..638cc06fed 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -197,6 +197,8 @@ if(ADIOS2_HAVE_MPI) add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) endif() +cmake_dependent_option(ADIOS2_Blosc2_PREFER_SHARED "Prefer shared Blosc2 libraries" + ON "Blosc2_shlib_available" OFF) #------------------------------------------------------------------------------# # POSIX O_DIRECT is only working for Unix in adios for now diff --git a/cmake/DetectOptions.cmake b/cmake/DetectOptions.cmake index 99d2d45cb1..5b71c1565b 100644 --- a/cmake/DetectOptions.cmake +++ b/cmake/DetectOptions.cmake @@ -69,12 +69,31 @@ endfunction() # Blosc2 if(ADIOS2_USE_Blosc2 STREQUAL AUTO) - find_package(Blosc2 2.4) + # Prefect CONFIG mode + find_package(Blosc2 2.4 CONFIG QUIET) + if(NOT Blosc2_FOUND) + find_package(Blosc2 2.4 MODULE QUIET) + endif() elseif(ADIOS2_USE_Blosc2) - find_package(Blosc2 2.4 REQUIRED) + # Prefect CONFIG mode + find_package(Blosc2 2.4 CONFIG REQUIRED) + if(NOT Blosc2_FOUND) + find_package(Blosc2 2.4 MODULE REQUIRED) + endif() endif() -if(BLOSC2_FOUND) +if(Blosc2_FOUND) set(ADIOS2_HAVE_Blosc2 TRUE) + if(TARGET Blosc2::blosc2_shared) + set(Blosc2_shlib_available ON) + endif() + + set(adios2_blosc2_tgt Blosc2::Blosc2) + if (Blosc2_VERSION VERSION_GREATER_EQUAL 2.10.1) + set(adios2_blosc2_tgt Blosc2::blosc2_$,shared,static>) + endif() + + add_library(adios2_blosc2 INTERFACE) + target_link_libraries(adios2_blosc2 INTERFACE ${adios2_blosc2_tgt}) endif() # BZip2 diff --git a/source/adios2/CMakeLists.txt b/source/adios2/CMakeLists.txt index 659ca94e70..8ce49a6904 100644 --- a/source/adios2/CMakeLists.txt +++ b/source/adios2/CMakeLists.txt @@ -273,9 +273,11 @@ if(ADIOS2_HAVE_DataSpaces) target_link_libraries(adios2_core_mpi PRIVATE DataSpaces::DataSpaces) endif() +set(maybe_adios2_blosc2) if(ADIOS2_HAVE_Blosc2) target_sources(adios2_core PRIVATE operator/compress/CompressBlosc.cpp) - target_link_libraries(adios2_core PRIVATE Blosc2::Blosc2) + target_link_libraries(adios2_core PRIVATE adios2_blosc2) + set(maybe_adios2_blosc2 adios2_blosc2) endif() if(ADIOS2_HAVE_BZip2) @@ -448,7 +450,7 @@ install(DIRECTORY toolkit/ ) # Library installation -install(TARGETS adios2_core ${maybe_adios2_core_mpi} ${maybe_adios2_core_cuda} ${maybe_adios2_core_kokkos} EXPORT adios2Exports +install(TARGETS adios2_core ${maybe_adios2_core_mpi} ${maybe_adios2_core_cuda} ${maybe_adios2_core_kokkos} ${maybe_adios2_blosc2} EXPORT adios2Exports RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} COMPONENT adios2_core-runtime LIBRARY DESTINATION ${CMAKE_INSTALL_LIBDIR} COMPONENT adios2_core-libraries NAMELINK_COMPONENT adios2_core-development ARCHIVE DESTINATION ${CMAKE_INSTALL_LIBDIR} COMPONENT adios2_core-development From 59fd7dc1c7a0343b0a6136d25516f9dec6b47f48 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Thu, 10 Aug 2023 18:24:47 -0400 Subject: [PATCH 079/183] CI: added blosc2 dependency to Spack build --- .../images/Dockerfile.ci-spack-ubuntu20.04-base | 17 +++++++++++++++++ 1 file changed, 17 insertions(+) diff --git a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base index 7d2b8f2222..084e1f7db3 100644 --- a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base +++ b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base @@ -52,4 +52,21 @@ RUN apt-get update && apt-get install -y \ update-alternatives --install /usr/bin/g++ g++ /usr/bin/g++-11 100 && \ update-alternatives --install /usr/bin/gfortran gfortran /usr/bin/gfortran-11 100 +# NONSPACK dependency +WORKDIR /opt/blosc2 +RUN curl -L https://github.com/Blosc/c-blosc2/archive/refs/tags/v2.10.1.tar.gz | tar -xvz && \ + mkdir build && \ + cd build && \ + . /spack/share/spack/setup-env.sh && \ + spack env activate adios2-ci-serial && \ + cmake -DBUILD_SHARED_LIBS=ON -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=/opt/blosc2/2.10.1 ../c-blosc2-2.10.1 && \ + cmake --build . -j$(grep -c '^processor' /proc/cpuinfo) && \ + cmake --install . && \ + cd .. && \ + rm -rf c-blosc2-2.10.1 build + +ENV PATH /opt/cmake/bin:/opt/blosc2/2.10.1/bin:${PATH} +ENV LD_LIBRARY_PATH /opt/blosc2/2.10.1/lib64:${LD_LIBRARY_PATH} +ENV CMAKE_PREFIX_PATH /opt/blosc2/2.10.1:${CMAKE_PREFIX_PATH} + ENTRYPOINT ["/bin/bash", "--login"] From 07fb1879a6ca1717978f0cc35d464e46490b1952 Mon Sep 17 00:00:00 2001 From: Norbert Podhorszki Date: Fri, 11 Aug 2023 06:51:41 -0400 Subject: [PATCH 080/183] Organize the processes into groups so that the two steps of metadata aggregation has more or less the same number or participants. This replaces in-node aggregation in first step. The new strategy balances the size of metadata gathered in the two steps. --- source/adios2/engine/bp5/BP5Writer.cpp | 53 +++++++++++++++----------- source/adios2/engine/bp5/BP5Writer.h | 5 +++ 2 files changed, 35 insertions(+), 23 deletions(-) diff --git a/source/adios2/engine/bp5/BP5Writer.cpp b/source/adios2/engine/bp5/BP5Writer.cpp index 6888573ca2..caa4f09f73 100644 --- a/source/adios2/engine/bp5/BP5Writer.cpp +++ b/source/adios2/engine/bp5/BP5Writer.cpp @@ -574,14 +574,14 @@ void BP5Writer::EndStep() TSInfo.NewMetaMetaBlocks, {m}, {a}, {m_ThisTimestepDataSize}, {m_StartDataPos}); - if (m_Aggregator->m_Comm.Size() > 1) + if (m_AggregatorMetadata.m_Comm.Size() > 1) { // level 1 m_Profiler.Start("meta_gather1"); size_t LocalSize = MetaBuffer.size(); std::vector RecvCounts = - m_Aggregator->m_Comm.GatherValues(LocalSize, 0); + m_AggregatorMetadata.m_Comm.GatherValues(LocalSize, 0); std::vector RecvBuffer; - if (m_Aggregator->m_Comm.Rank() == 0) + if (m_AggregatorMetadata.m_Comm.Rank() == 0) { uint64_t TotalSize = 0; for (auto &n : RecvCounts) @@ -591,11 +591,11 @@ void BP5Writer::EndStep() << TotalSize << " bytes from aggregator group" << std::endl;*/ } - m_Aggregator->m_Comm.GathervArrays(MetaBuffer.data(), LocalSize, - RecvCounts.data(), RecvCounts.size(), - RecvBuffer.data(), 0); + m_AggregatorMetadata.m_Comm.GathervArrays( + MetaBuffer.data(), LocalSize, RecvCounts.data(), RecvCounts.size(), + RecvBuffer.data(), 0); m_Profiler.Stop("meta_gather1"); - if (m_Aggregator->m_Comm.Rank() == 0) + if (m_AggregatorMetadata.m_Comm.Rank() == 0) { std::vector UniqueMetaMetaBlocks; @@ -615,17 +615,17 @@ void BP5Writer::EndStep() m_Profiler.Stop("meta_lvl1"); m_Profiler.Start("meta_lvl2"); // level 2 - if (m_Aggregator->m_Comm.Rank() == 0) + if (m_AggregatorMetadata.m_Comm.Rank() == 0) { std::vector RecvBuffer; std::vector *buf; std::vector RecvCounts; size_t LocalSize = MetaBuffer.size(); - if (m_CommAggregators.Size() > 1) + if (m_CommMetadataAggregators.Size() > 1) { m_Profiler.Start("meta_gather2"); - RecvCounts = m_CommAggregators.GatherValues(LocalSize, 0); - if (m_CommAggregators.Rank() == 0) + RecvCounts = m_CommMetadataAggregators.GatherValues(LocalSize, 0); + if (m_CommMetadataAggregators.Rank() == 0) { uint64_t TotalSize = 0; for (auto &n : RecvCounts) @@ -636,7 +636,7 @@ void BP5Writer::EndStep() << std::endl;*/ } - m_CommAggregators.GathervArrays( + m_CommMetadataAggregators.GathervArrays( MetaBuffer.data(), LocalSize, RecvCounts.data(), RecvCounts.size(), RecvBuffer.data(), 0); buf = &RecvBuffer; @@ -648,7 +648,7 @@ void BP5Writer::EndStep() RecvCounts.push_back(LocalSize); } - if (m_CommAggregators.Rank() == 0) + if (m_CommMetadataAggregators.Rank() == 0) { std::vector UniqueMetaMetaBlocks; @@ -693,12 +693,12 @@ void BP5Writer::EndStep() if (TSInfo.AttributeEncodeBuffer) { - delete TSInfo.AttributeEncodeBuffer; + delete TSInfo.AttributeEncodeBuffer; } if (TSInfo.MetaEncodeBuffer) { - delete TSInfo.MetaEncodeBuffer; + delete TSInfo.MetaEncodeBuffer; } } @@ -860,8 +860,7 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) switch (recordID) { - case IndexRecord::WriterMapRecord: - { + case IndexRecord::WriterMapRecord: { m_AppendWriterCount = helper::ReadValue(buffer, position, IsLittleEndian); m_AppendAggregatorCount = @@ -876,8 +875,7 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) position += m_AppendWriterCount * sizeof(uint64_t); break; } - case IndexRecord::StepRecord: - { + case IndexRecord::StepRecord: { position += 2 * sizeof(uint64_t); // MetadataPos, MetadataSize const uint64_t FlushCount = helper::ReadValue(buffer, position, IsLittleEndian); @@ -947,8 +945,7 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) switch (recordID) { - case IndexRecord::WriterMapRecord: - { + case IndexRecord::WriterMapRecord: { m_AppendWriterCount = helper::ReadValue(buffer, position, IsLittleEndian); m_AppendAggregatorCount = @@ -966,8 +963,7 @@ uint64_t BP5Writer::CountStepsInMetadataIndex(format::BufferSTL &bufferSTL) } break; } - case IndexRecord::StepRecord: - { + case IndexRecord::StepRecord: { m_AppendMetadataIndexPos = position - sizeof(unsigned char) - sizeof(uint64_t); // pos of RecordID const uint64_t MetadataPos = @@ -1061,6 +1057,17 @@ void BP5Writer::InitAggregator() int color = m_Aggregator->m_Comm.Rank(); m_CommAggregators = m_Comm.Split(color, 0, "creating level 2 chain of aggregators at Open"); + + /* Metadata aggregator for two-level metadata aggregation */ + { + size_t n = static_cast(m_Comm.Size()); + size_t a = (int)floor(sqrt((double)n)); + m_AggregatorMetadata.Init(a, a, m_Comm); + /* chain of rank 0s form the second level of aggregation */ + int color = m_AggregatorMetadata.m_Comm.Rank(); + m_CommMetadataAggregators = m_Comm.Split( + color, 0, "creating level 2 chain of aggregators at Open"); + } } void BP5Writer::InitTransports() diff --git a/source/adios2/engine/bp5/BP5Writer.h b/source/adios2/engine/bp5/BP5Writer.h index 829138b292..2517a5e50f 100644 --- a/source/adios2/engine/bp5/BP5Writer.h +++ b/source/adios2/engine/bp5/BP5Writer.h @@ -204,6 +204,11 @@ class BP5Writer : public BP5Engine, public core::Engine helper::Comm *DataWritingComm; // processes that write the same data file // aggregators only (valid if m_Aggregator->m_Comm.Rank() == 0) helper::Comm m_CommAggregators; + + /* two-level metadata aggregation */ + aggregator::MPIChain m_AggregatorMetadata; // first level + helper::Comm m_CommMetadataAggregators; // second level + adios2::profiling::JSONProfiler m_Profiler; protected: From 47082efc7632b6d60c607c2b7824af14c478edcd Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Thu, 10 Aug 2023 18:24:56 -0400 Subject: [PATCH 081/183] CI: use full image tag --- .../Dockerfile.ci-spack-ubuntu20.04-clang | 2 +- .../Dockerfile.ci-spack-ubuntu20.04-gcc | 2 +- .../Dockerfile.ci-spack-ubuntu20.04-intel | 2 +- scripts/ci/images/build-ubuntu.sh | 23 +++++++------------ 4 files changed, 11 insertions(+), 18 deletions(-) diff --git a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang index ff9e0f0dfa..7e3ffa619d 100644 --- a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang +++ b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang @@ -1,4 +1,4 @@ -FROM adios2:ci-spack-ubuntu20.04-base +FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base ARG CLANG_VERSION=10 RUN apt-get update && apt-get install -y \ diff --git a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-gcc b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-gcc index cfd679d5ca..741ac230d4 100644 --- a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-gcc +++ b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-gcc @@ -1,4 +1,4 @@ -FROM adios2:ci-spack-ubuntu20.04-base +FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base ARG GCC_VERSION=8 RUN apt-get update && apt-get install -y \ diff --git a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-intel b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-intel index c66b0a93a9..2fe9ac6a8e 100644 --- a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-intel +++ b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-intel @@ -1,4 +1,4 @@ -FROM adios2:ci-spack-ubuntu20.04-base +FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base RUN wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | tee /usr/share/keyrings/oneapi-archive-keyring.gpg && \ echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | tee /etc/apt/sources.list.d/oneAPI.list && \ diff --git a/scripts/ci/images/build-ubuntu.sh b/scripts/ci/images/build-ubuntu.sh index 2129e79767..1a535c1203 100755 --- a/scripts/ci/images/build-ubuntu.sh +++ b/scripts/ci/images/build-ubuntu.sh @@ -3,29 +3,22 @@ set -ex # Build the base image -docker build --rm -f ./Dockerfile.ci-spack-ubuntu20.04-base -t adios2:ci-spack-ubuntu20.04-base . +docker build --rm -f ./Dockerfile.ci-spack-ubuntu20.04-base -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base . # Which is also the gcc11 image -docker tag adios2:ci-spack-ubuntu20.04-base adios2:ci-spack-ubuntu20.04-gcc11 +docker tag ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc11 # Build the gcc8, gcc9, and gcc10 images -docker build --rm --build-arg GCC_VERSION=8 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t adios2:ci-spack-ubuntu20.04-gcc8 . -docker build --rm --build-arg GCC_VERSION=9 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t adios2:ci-spack-ubuntu20.04-gcc9 . -docker build --rm --build-arg GCC_VERSION=10 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t adios2:ci-spack-ubuntu20.04-gcc10 . +docker build --rm --build-arg GCC_VERSION=8 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc8 . +docker build --rm --build-arg GCC_VERSION=9 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc9 . +docker build --rm --build-arg GCC_VERSION=10 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc10 . # Build the clang6 and clang10 images -docker build --rm --build-arg CLANG_VERSION=6.0 -f ./Dockerfile.ci-spack-ubuntu20.04-clang -t adios2:ci-spack-ubuntu20.04-clang6 . -docker build --rm --build-arg CLANG_VERSION=10 -f ./Dockerfile.ci-spack-ubuntu20.04-clang -t adios2:ci-spack-ubuntu20.04-clang10 . - -# Tag images for pushing -docker tag adios2:ci-spack-ubuntu20.04-gcc8 ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc8 -docker tag adios2:ci-spack-ubuntu20.04-gcc9 ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc9 -docker tag adios2:ci-spack-ubuntu20.04-gcc10 ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc10 -docker tag adios2:ci-spack-ubuntu20.04-gcc11 ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc11 -docker tag adios2:ci-spack-ubuntu20.04-clang6 ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang6 -docker tag adios2:ci-spack-ubuntu20.04-clang10 ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang10 +docker build --rm --build-arg CLANG_VERSION=6.0 -f ./Dockerfile.ci-spack-ubuntu20.04-clang -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang6 . +docker build --rm --build-arg CLANG_VERSION=10 -f ./Dockerfile.ci-spack-ubuntu20.04-clang -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang10 . # Push images to github container registry +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc8 docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc9 docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc10 From 8a333d8e1f5ee8bbe39c8b48f7838f8bee5c2f1f Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Thu, 10 Aug 2023 18:59:23 -0400 Subject: [PATCH 082/183] CI: add two static builds --- .github/workflows/everything.yml | 17 +++++-- .../ci-ubuntu20.04-clang6-static-ompi.cmake | 44 +++++++++++++++++++ .../ci-ubuntu20.04-gcc8-static-ompi.cmake | 44 +++++++++++++++++++ 3 files changed, 102 insertions(+), 3 deletions(-) create mode 100644 scripts/ci/cmake/ci-ubuntu20.04-clang6-static-ompi.cmake create mode 100644 scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-ompi.cmake diff --git a/.github/workflows/everything.yml b/.github/workflows/everything.yml index 46c01cf4f8..680f0c5e8b 100644 --- a/.github/workflows/everything.yml +++ b/.github/workflows/everything.yml @@ -111,7 +111,7 @@ jobs: image: ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-${{ matrix.compiler }} options: --shm-size=1g env: - GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.gpu_backend }}${{ matrix.compiler }}-${{ matrix.parallel }} + GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}${{ matrix.shared == 'static' && '-static' || ''}}-${{ matrix.parallel }} GH_YML_BASE_OS: Linux GH_YML_MATRIX_OS: ${{ matrix.os }} GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} @@ -126,6 +126,7 @@ jobs: matrix: os: [ubuntu20.04] compiler: [gcc8, gcc9, gcc10, gcc11, clang6, clang10] + shared: [shared] parallel: [ompi] include: - os: ubuntu20.04 @@ -137,7 +138,16 @@ jobs: - os: ubuntu20.04 compiler: clang6 parallel: serial - + - os: ubuntu20.04 + compiler: gcc8 + shared: static + parallel: ompi + constrains: build_only + - os: ubuntu20.04 + compiler: clang6 + shared: static + parallel: ompi + constrains: build_only steps: - uses: actions/checkout@v3 with: @@ -174,6 +184,7 @@ jobs: path: .ccache key: ccache-${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }}-${{ github.sha }} - name: Test + if: ${{ matrix.constrains != 'build_only' }} run: gha/scripts/ci/gh-actions/run.sh test linux_el8: @@ -185,7 +196,7 @@ jobs: image: ghcr.io/ornladios/adios2:ci-el8-${{ matrix.compiler }} options: --shm-size=1g env: - GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.gpu_backend }}${{ matrix.compiler }}-${{ matrix.parallel }} + GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}-${{ matrix.parallel }} GH_YML_BASE_OS: Linux GH_YML_MATRIX_OS: ${{ matrix.os }} GH_YML_MATRIX_COMPILER: ${{ matrix.compiler }} diff --git a/scripts/ci/cmake/ci-ubuntu20.04-clang6-static-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-clang6-static-ompi.cmake new file mode 100644 index 0000000000..ce9699c794 --- /dev/null +++ b/scripts/ci/cmake/ci-ubuntu20.04-clang6-static-ompi.cmake @@ -0,0 +1,44 @@ +include(ProcessorCount) +ProcessorCount(NCPUS) +math(EXPR N2CPUS "${NCPUS}*2") + +set(ENV{CC} clang-6.0) +set(ENV{CXX} clang++-6.0) +set(ENV{FC} gfortran-11) + +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + +set(dashboard_cache " +BUILD_SHARED_LIBS=OFF +BUILD_TESTING=OFF +ADIOS2_USE_BZip2:BOOL=ON +ADIOS2_USE_Blosc:BOOL=ON +ADIOS2_USE_DataMan:BOOL=ON +ADIOS2_USE_Fortran:BOOL=ON +ADIOS2_USE_HDF5:BOOL=ON +ADIOS2_USE_MPI:BOOL=ON +ADIOS2_USE_Python:BOOL=ON +ADIOS2_USE_SZ:BOOL=ON +ADIOS2_USE_ZeroMQ:STRING=ON +ADIOS2_USE_ZFP:BOOL=ON + +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache +CMAKE_C_FLAGS:STRING=-Wall +CMAKE_CXX_FLAGS:STRING=-Wall +CMAKE_Fortran_FLAGS:STRING=-Wall + +MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe +MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} +") + +set(CTEST_CMAKE_GENERATOR "Ninja") +list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-ompi.cmake new file mode 100644 index 0000000000..40ba13974d --- /dev/null +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-ompi.cmake @@ -0,0 +1,44 @@ +include(ProcessorCount) +ProcessorCount(NCPUS) +math(EXPR N2CPUS "${NCPUS}*2") + +set(ENV{CC} gcc) +set(ENV{CXX} g++) +set(ENV{FC} gfortran) + +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + +set(dashboard_cache " +BUILD_SHARED_LIBS=OFF +BUILD_TESTING=OFF +ADIOS2_USE_BZip2:BOOL=ON +ADIOS2_USE_Blosc:BOOL=ON +ADIOS2_USE_DataMan:BOOL=ON +ADIOS2_USE_Fortran:BOOL=ON +ADIOS2_USE_HDF5:BOOL=ON +ADIOS2_USE_MPI:BOOL=ON +ADIOS2_USE_Python:BOOL=ON +ADIOS2_USE_SZ:BOOL=ON +ADIOS2_USE_ZeroMQ:STRING=ON +ADIOS2_USE_ZFP:BOOL=ON + +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache +CMAKE_C_FLAGS:STRING=-Wall +CMAKE_CXX_FLAGS:STRING=-Wall +CMAKE_Fortran_FLAGS:STRING=-Wall + +MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe +MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} +") + +set(CTEST_CMAKE_GENERATOR "Ninja") +list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) From 19382d1054a26bf3865b5115e2c921fd58635245 Mon Sep 17 00:00:00 2001 From: ffs Upstream Date: Mon, 14 Aug 2023 15:54:16 -0400 Subject: [PATCH 083/183] ffs 2023-08-14 (2f3fe98d) Code extracted from: https://github.com/GTkorvo/ffs.git at commit 2f3fe98dfc0ad5ff3a979114702b6a676effad88 (master). Upstream Shortlog ----------------- --- CMakeLists.txt | 2 +- cod/cod.l | 63 --- cod/pregen_source/Linux/lex.yy.c | 748 ++++++++++++++----------------- 3 files changed, 344 insertions(+), 469 deletions(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index b426801a7b..7d8589f95e 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required(VERSION 3.0) +cmake_minimum_required(VERSION 3.5) # The directory label is used for CDash to treat FFS as a subproject of GTKorvo set(CMAKE_DIRECTORY_LABELS FFS) diff --git a/cod/cod.l b/cod/cod.l index fd5517b57a..92d92c81af 100644 --- a/cod/cod.l +++ b/cod/cod.l @@ -359,70 +359,9 @@ yywrap YY_PROTO(( void )) } -#ifndef input /* flex, not lex */ void yy_delete_buffer YY_PROTO((YY_BUFFER_STATE b)); -#ifdef WINNT -/* old Windows code for MKS Toolkit version of flex */ - -static void -terminate_string_parse() -{ - yyrestart(NULL); -} - -#ifdef YY_USE_PROTOS -static void *yy_flex_alloc( yy_size_t size ) -#else -static void *yy_flex_alloc( size ) -yy_size_t size; -#endif - { - return (void *) malloc( size ); - } - -static char* current_input_string; - -int my_yy_input(buf,result,max_size) { - - if (current_input_string == NULL) - { - - result = 0; - } - else - if (max_size < strlen(current_input_string)) - { - memcpy((void*)buf, current_input_string, max_size); - current_input_string += max_size; - result = max_size; - } else { - int n = strlen(current_input_string); - memcpy((void*)buf, current_input_string, n+1); - current_input_string = NULL; - result = n; - } - -/* printf("my_yy_input buf[%s],result[%d]\n",buf,result);*/ - return result; -} - -static void -setup_for_string_parse(string, defined_types, enum_constants) -const char *string; -char **defined_types; -char **enum_constants; -{ - type_count = defined_type_count; - types = defined_types; - enums = enum_constants; - - current_input_string = string; - lex_offset = 1; - line_count = 1; -} -#else static YY_BUFFER_STATE bb = NULL; @@ -455,5 +394,3 @@ terminate_string_parse() } } -#endif -#endif diff --git a/cod/pregen_source/Linux/lex.yy.c b/cod/pregen_source/Linux/lex.yy.c index e754ca5f93..87e6fbf9fb 100644 --- a/cod/pregen_source/Linux/lex.yy.c +++ b/cod/pregen_source/Linux/lex.yy.c @@ -1,6 +1,6 @@ -#line 2 "/Users/eisen/prog/ffs/build/lex.yy.c" +#line 1 "/ccs/home/eisen/ffs/build/lex.yy.c" -#line 4 "/Users/eisen/prog/ffs/build/lex.yy.c" +#line 3 "/ccs/home/eisen/ffs/build/lex.yy.c" #define YY_INT_ALIGNED short int @@ -8,8 +8,8 @@ #define FLEX_SCANNER #define YY_FLEX_MAJOR_VERSION 2 -#define YY_FLEX_MINOR_VERSION 5 -#define YY_FLEX_SUBMINOR_VERSION 35 +#define YY_FLEX_MINOR_VERSION 6 +#define YY_FLEX_SUBMINOR_VERSION 4 #if YY_FLEX_SUBMINOR_VERSION > 0 #define FLEX_BETA #endif @@ -47,7 +47,6 @@ typedef int16_t flex_int16_t; typedef uint16_t flex_uint16_t; typedef int32_t flex_int32_t; typedef uint32_t flex_uint32_t; -typedef uint64_t flex_uint64_t; #else typedef signed char flex_int8_t; typedef short int flex_int16_t; @@ -55,7 +54,6 @@ typedef int flex_int32_t; typedef unsigned char flex_uint8_t; typedef unsigned short int flex_uint16_t; typedef unsigned int flex_uint32_t; -#endif /* ! C99 */ /* Limits of integral types. */ #ifndef INT8_MIN @@ -86,63 +84,61 @@ typedef unsigned int flex_uint32_t; #define UINT32_MAX (4294967295U) #endif -#endif /* ! FLEXINT_H */ - -#ifdef __cplusplus - -/* The "const" storage-class-modifier is valid. */ -#define YY_USE_CONST - -#else /* ! __cplusplus */ +#ifndef SIZE_MAX +#define SIZE_MAX (~(size_t)0) +#endif -/* C99 requires __STDC__ to be defined as 1. */ -#if defined (__STDC__) +#endif /* ! C99 */ -#define YY_USE_CONST +#endif /* ! FLEXINT_H */ -#endif /* defined (__STDC__) */ -#endif /* ! __cplusplus */ +/* begin standard C++ headers. */ -#ifdef YY_USE_CONST +/* TODO: this is always defined, so inline it */ #define yyconst const + +#if defined(__GNUC__) && __GNUC__ >= 3 +#define yynoreturn __attribute__((__noreturn__)) #else -#define yyconst +#define yynoreturn #endif /* Returned upon end-of-file. */ #define YY_NULL 0 -/* Promotes a possibly negative, possibly signed char to an unsigned - * integer for use as an array index. If the signed char is negative, - * we want to instead treat it as an 8-bit unsigned char, hence the - * double cast. +/* Promotes a possibly negative, possibly signed char to an + * integer in range [0..255] for use as an array index. */ -#define YY_SC_TO_UI(c) ((unsigned int) (unsigned char) c) +#define YY_SC_TO_UI(c) ((YY_CHAR) (c)) /* Enter a start condition. This macro really ought to take a parameter, * but we do it the disgusting crufty way forced on us by the ()-less * definition of BEGIN. */ #define BEGIN (yy_start) = 1 + 2 * - /* Translate the current start state into a value that can be later handed * to BEGIN to return to the state. The YYSTATE alias is for lex * compatibility. */ #define YY_START (((yy_start) - 1) / 2) #define YYSTATE YY_START - /* Action number for EOF rule of a given start state. */ #define YY_STATE_EOF(state) (YY_END_OF_BUFFER + state + 1) - /* Special action meaning "start processing a new file". */ -#define YY_NEW_FILE yyrestart(yyin ) - +#define YY_NEW_FILE yyrestart( yyin ) #define YY_END_OF_BUFFER_CHAR 0 /* Size of default input buffer. */ #ifndef YY_BUF_SIZE +#ifdef __ia64__ +/* On IA-64, the buffer size is 16k, not 8k. + * Moreover, YY_BUF_SIZE is 2*YY_READ_BUF_SIZE in the general case. + * Ditto for the __ia64__ case accordingly. + */ +#define YY_BUF_SIZE 32768 +#else #define YY_BUF_SIZE 16384 +#endif /* __ia64__ */ #endif /* The state buf must be large enough to hold one state per character in the main buffer. @@ -159,15 +155,16 @@ typedef struct yy_buffer_state *YY_BUFFER_STATE; typedef size_t yy_size_t; #endif -extern yy_size_t yyleng; +extern int yyleng; extern FILE *yyin, *yyout; #define EOB_ACT_CONTINUE_SCAN 0 #define EOB_ACT_END_OF_FILE 1 #define EOB_ACT_LAST_MATCH 2 - + #define YY_LESS_LINENO(n) + #define YY_LINENO_REWIND_TO(ptr) /* Return all but the first "n" matched characters back to the input stream. */ #define yyless(n) \ @@ -182,7 +179,6 @@ extern FILE *yyin, *yyout; YY_DO_BEFORE_ACTION; /* set up yytext again */ \ } \ while ( 0 ) - #define unput(c) yyunput( c, (yytext_ptr) ) #ifndef YY_STRUCT_YY_BUFFER_STATE @@ -197,12 +193,12 @@ struct yy_buffer_state /* Size of input buffer in bytes, not including room for EOB * characters. */ - yy_size_t yy_buf_size; + int yy_buf_size; /* Number of characters read into yy_ch_buf, not including EOB * characters. */ - yy_size_t yy_n_chars; + int yy_n_chars; /* Whether we "own" the buffer - i.e., we know we created it, * and can realloc() it to grow it, and should free() it to @@ -225,7 +221,7 @@ struct yy_buffer_state int yy_bs_lineno; /**< The line count. */ int yy_bs_column; /**< The column count. */ - + /* Whether to try to fill the input buffer when we reach the * end of it. */ @@ -253,7 +249,7 @@ struct yy_buffer_state /* Stack of input buffers. */ static size_t yy_buffer_stack_top = 0; /**< index of top of stack. */ static size_t yy_buffer_stack_max = 0; /**< capacity of stack. */ -static YY_BUFFER_STATE * yy_buffer_stack = 0; /**< Stack as an array. */ +static YY_BUFFER_STATE * yy_buffer_stack = NULL; /**< Stack as an array. */ /* We provide macros for accessing buffer states in case in the * future we want to put the buffer states in a more general @@ -264,7 +260,6 @@ static YY_BUFFER_STATE * yy_buffer_stack = 0; /**< Stack as an array. */ #define YY_CURRENT_BUFFER ( (yy_buffer_stack) \ ? (yy_buffer_stack)[(yy_buffer_stack_top)] \ : NULL) - /* Same as previous macro, but useful when we know that the buffer stack is not * NULL or when we need an lvalue. For internal use only. */ @@ -272,11 +267,11 @@ static YY_BUFFER_STATE * yy_buffer_stack = 0; /**< Stack as an array. */ /* yy_hold_char holds the character lost when yytext is formed. */ static char yy_hold_char; -static yy_size_t yy_n_chars; /* number of characters read into yy_ch_buf */ -yy_size_t yyleng; +static int yy_n_chars; /* number of characters read into yy_ch_buf */ +int yyleng; /* Points to current character in buffer. */ -static char *yy_c_buf_p = (char *) 0; +static char *yy_c_buf_p = NULL; static int yy_init = 0; /* whether we need to initialize */ static int yy_start = 0; /* start state number */ @@ -285,82 +280,78 @@ static int yy_start = 0; /* start state number */ */ static int yy_did_buffer_switch_on_eof; -void yyrestart (FILE *input_file ); -void yy_switch_to_buffer (YY_BUFFER_STATE new_buffer ); -YY_BUFFER_STATE yy_create_buffer (FILE *file,int size ); -void yy_delete_buffer (YY_BUFFER_STATE b ); -void yy_flush_buffer (YY_BUFFER_STATE b ); -void yypush_buffer_state (YY_BUFFER_STATE new_buffer ); -void yypop_buffer_state (void ); - -static void yyensure_buffer_stack (void ); -static void yy_load_buffer_state (void ); -static void yy_init_buffer (YY_BUFFER_STATE b,FILE *file ); +void yyrestart ( FILE *input_file ); +void yy_switch_to_buffer ( YY_BUFFER_STATE new_buffer ); +YY_BUFFER_STATE yy_create_buffer ( FILE *file, int size ); +void yy_delete_buffer ( YY_BUFFER_STATE b ); +void yy_flush_buffer ( YY_BUFFER_STATE b ); +void yypush_buffer_state ( YY_BUFFER_STATE new_buffer ); +void yypop_buffer_state ( void ); -#define YY_FLUSH_BUFFER yy_flush_buffer(YY_CURRENT_BUFFER ) +static void yyensure_buffer_stack ( void ); +static void yy_load_buffer_state ( void ); +static void yy_init_buffer ( YY_BUFFER_STATE b, FILE *file ); +#define YY_FLUSH_BUFFER yy_flush_buffer( YY_CURRENT_BUFFER ) -YY_BUFFER_STATE yy_scan_buffer (char *base,yy_size_t size ); -YY_BUFFER_STATE yy_scan_string (yyconst char *yy_str ); -YY_BUFFER_STATE yy_scan_bytes (yyconst char *bytes,yy_size_t len ); +YY_BUFFER_STATE yy_scan_buffer ( char *base, yy_size_t size ); +YY_BUFFER_STATE yy_scan_string ( const char *yy_str ); +YY_BUFFER_STATE yy_scan_bytes ( const char *bytes, int len ); -void *yyalloc (yy_size_t ); -void *yyrealloc (void *,yy_size_t ); -void yyfree (void * ); +void *yyalloc ( yy_size_t ); +void *yyrealloc ( void *, yy_size_t ); +void yyfree ( void * ); #define yy_new_buffer yy_create_buffer - #define yy_set_interactive(is_interactive) \ { \ if ( ! YY_CURRENT_BUFFER ){ \ yyensure_buffer_stack (); \ YY_CURRENT_BUFFER_LVALUE = \ - yy_create_buffer(yyin,YY_BUF_SIZE ); \ + yy_create_buffer( yyin, YY_BUF_SIZE ); \ } \ YY_CURRENT_BUFFER_LVALUE->yy_is_interactive = is_interactive; \ } - #define yy_set_bol(at_bol) \ { \ if ( ! YY_CURRENT_BUFFER ){\ yyensure_buffer_stack (); \ YY_CURRENT_BUFFER_LVALUE = \ - yy_create_buffer(yyin,YY_BUF_SIZE ); \ + yy_create_buffer( yyin, YY_BUF_SIZE ); \ } \ YY_CURRENT_BUFFER_LVALUE->yy_at_bol = at_bol; \ } - #define YY_AT_BOL() (YY_CURRENT_BUFFER_LVALUE->yy_at_bol) /* Begin user sect3 */ +typedef flex_uint8_t YY_CHAR; -typedef unsigned char YY_CHAR; - -FILE *yyin = (FILE *) 0, *yyout = (FILE *) 0; +FILE *yyin = NULL, *yyout = NULL; typedef int yy_state_type; extern int yylineno; - int yylineno = 1; extern char *yytext; +#ifdef yytext_ptr +#undef yytext_ptr +#endif #define yytext_ptr yytext -static yy_state_type yy_get_previous_state (void ); -static yy_state_type yy_try_NUL_trans (yy_state_type current_state ); -static int yy_get_next_buffer (void ); -static void yy_fatal_error (yyconst char msg[] ); +static yy_state_type yy_get_previous_state ( void ); +static yy_state_type yy_try_NUL_trans ( yy_state_type current_state ); +static int yy_get_next_buffer ( void ); +static void yynoreturn yy_fatal_error ( const char* msg ); /* Done after the current pattern has been matched and before the * corresponding action - sets up yytext. */ #define YY_DO_BEFORE_ACTION \ (yytext_ptr) = yy_bp; \ - yyleng = (yy_size_t) (yy_cp - yy_bp); \ + yyleng = (int) (yy_cp - yy_bp); \ (yy_hold_char) = *yy_cp; \ *yy_cp = '\0'; \ (yy_c_buf_p) = yy_cp; - #define YY_NUM_RULES 107 #define YY_END_OF_BUFFER 108 /* This struct is not used in this scanner, @@ -370,7 +361,7 @@ struct yy_trans_info flex_int32_t yy_verify; flex_int32_t yy_nxt; }; -static yyconst flex_int16_t yy_accept[284] = +static const flex_int16_t yy_accept[284] = { 0, 0, 0, 0, 0, 90, 90, 108, 107, 105, 106, 72, 76, 12, 38, 107, 2, 3, 9, 13, 8, @@ -405,7 +396,7 @@ static yyconst flex_int16_t yy_accept[284] = 61, 48, 0 } ; -static yyconst flex_int32_t yy_ec[256] = +static const YY_CHAR yy_ec[256] = { 0, 1, 1, 1, 1, 1, 1, 1, 1, 2, 3, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, @@ -437,7 +428,7 @@ static yyconst flex_int32_t yy_ec[256] = 1, 1, 1, 1, 1 } ; -static yyconst flex_int32_t yy_meta[68] = +static const YY_CHAR yy_meta[68] = { 0, 1, 1, 2, 1, 3, 1, 1, 4, 1, 1, 5, 1, 1, 1, 6, 1, 7, 7, 7, 8, @@ -448,7 +439,7 @@ static yyconst flex_int32_t yy_meta[68] = 11, 10, 10, 1, 1, 1, 1 } ; -static yyconst flex_int16_t yy_base[299] = +static const flex_int16_t yy_base[299] = { 0, 0, 0, 65, 66, 69, 70, 614, 615, 615, 615, 589, 615, 588, 67, 574, 615, 615, 586, 63, 615, @@ -485,7 +476,7 @@ static yyconst flex_int16_t yy_base[299] = } ; -static yyconst flex_int16_t yy_def[299] = +static const flex_int16_t yy_def[299] = { 0, 283, 1, 284, 284, 285, 285, 283, 283, 283, 283, 283, 283, 283, 283, 286, 283, 283, 283, 283, 283, @@ -522,7 +513,7 @@ static yyconst flex_int16_t yy_def[299] = } ; -static yyconst flex_int16_t yy_nxt[683] = +static const flex_int16_t yy_nxt[683] = { 0, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 25, 25, @@ -601,7 +592,7 @@ static yyconst flex_int16_t yy_nxt[683] = 283, 283 } ; -static yyconst flex_int16_t yy_chk[683] = +static const flex_int16_t yy_chk[683] = { 0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1, @@ -752,8 +743,7 @@ extern int my_yy_input(); #endif static int -is_defined_type(id) -char *id; +is_defined_type(char *id) { int i = 0; while(types && types[i]) { @@ -764,8 +754,7 @@ char *id; } static int -is_enumeration_constant(id) -char *id; +is_enumeration_constant(char *id) { int i = 0; while(enums && enums[i]) { @@ -778,8 +767,9 @@ static void check_strbuf(); static int buffer_len; static char *string_buffer; static char *string_buf_ptr; +#line 770 "/ccs/home/eisen/ffs/build/lex.yy.c" -#line 783 "/Users/eisen/prog/ffs/build/lex.yy.c" +#line 772 "/ccs/home/eisen/ffs/build/lex.yy.c" #define INITIAL 0 #define string_cond 1 @@ -797,36 +787,36 @@ static char *string_buf_ptr; #define YY_EXTRA_TYPE void * #endif -static int yy_init_globals (void ); +static int yy_init_globals ( void ); /* Accessor methods to globals. These are made visible to non-reentrant scanners for convenience. */ -int yylex_destroy (void ); +int yylex_destroy ( void ); -int yyget_debug (void ); +int yyget_debug ( void ); -void yyset_debug (int debug_flag ); +void yyset_debug ( int debug_flag ); -YY_EXTRA_TYPE yyget_extra (void ); +YY_EXTRA_TYPE yyget_extra ( void ); -void yyset_extra (YY_EXTRA_TYPE user_defined ); +void yyset_extra ( YY_EXTRA_TYPE user_defined ); -FILE *yyget_in (void ); +FILE *yyget_in ( void ); -void yyset_in (FILE * in_str ); +void yyset_in ( FILE * _in_str ); -FILE *yyget_out (void ); +FILE *yyget_out ( void ); -void yyset_out (FILE * out_str ); +void yyset_out ( FILE * _out_str ); -yy_size_t yyget_leng (void ); + int yyget_leng ( void ); -char *yyget_text (void ); +char *yyget_text ( void ); -int yyget_lineno (void ); +int yyget_lineno ( void ); -void yyset_lineno (int line_number ); +void yyset_lineno ( int _line_number ); /* Macros after this point can all be overridden by user definitions in * section 1. @@ -834,35 +824,43 @@ void yyset_lineno (int line_number ); #ifndef YY_SKIP_YYWRAP #ifdef __cplusplus -extern "C" int yywrap (void ); +extern "C" int yywrap ( void ); #else -extern int yywrap (void ); +extern int yywrap ( void ); #endif #endif - static void yyunput (int c,char *buf_ptr ); +#ifndef YY_NO_UNPUT + + static void yyunput ( int c, char *buf_ptr ); +#endif + #ifndef yytext_ptr -static void yy_flex_strncpy (char *,yyconst char *,int ); +static void yy_flex_strncpy ( char *, const char *, int ); #endif #ifdef YY_NEED_STRLEN -static int yy_flex_strlen (yyconst char * ); +static int yy_flex_strlen ( const char * ); #endif #ifndef YY_NO_INPUT - #ifdef __cplusplus -static int yyinput (void ); +static int yyinput ( void ); #else -static int input (void ); +static int input ( void ); #endif #endif /* Amount of stuff to slurp up with each read. */ #ifndef YY_READ_BUF_SIZE +#ifdef __ia64__ +/* On IA-64, the buffer size is 16k, not 8k */ +#define YY_READ_BUF_SIZE 16384 +#else #define YY_READ_BUF_SIZE 8192 +#endif /* __ia64__ */ #endif /* Copy whatever the last rule matched to the standard output. */ @@ -870,7 +868,7 @@ static int input (void ); /* This used to be an fputs(), but since the string might contain NUL's, * we now use fwrite(). */ -#define ECHO fwrite( yytext, yyleng, 1, yyout ) +#define ECHO do { if (fwrite( yytext, (size_t) yyleng, 1, yyout )) {} } while (0) #endif /* Gets input and stuffs it into "buf". number of characters read, or YY_NULL, @@ -881,7 +879,7 @@ static int input (void ); if ( YY_CURRENT_BUFFER_LVALUE->yy_is_interactive ) \ { \ int c = '*'; \ - yy_size_t n; \ + int n; \ for ( n = 0; n < max_size && \ (c = getc( yyin )) != EOF && c != '\n'; ++n ) \ buf[n] = (char) c; \ @@ -894,7 +892,7 @@ static int input (void ); else \ { \ errno=0; \ - while ( (result = fread(buf, 1, max_size, yyin))==0 && ferror(yyin)) \ + while ( (result = (int) fread(buf, 1, (yy_size_t) max_size, yyin)) == 0 && ferror(yyin)) \ { \ if( errno != EINTR) \ { \ @@ -949,7 +947,7 @@ extern int yylex (void); /* Code executed at the end of each rule. */ #ifndef YY_BREAK -#define YY_BREAK break; +#define YY_BREAK /*LINTED*/break; #endif #define YY_RULE_SETUP \ @@ -959,16 +957,10 @@ extern int yylex (void); */ YY_DECL { - register yy_state_type yy_current_state; - register char *yy_cp, *yy_bp; - register int yy_act; + yy_state_type yy_current_state; + char *yy_cp, *yy_bp; + int yy_act; -#line 103 "cod/cod.l" - - - -#line 971 "/Users/eisen/prog/ffs/build/lex.yy.c" - if ( !(yy_init) ) { (yy_init) = 1; @@ -989,13 +981,20 @@ YY_DECL if ( ! YY_CURRENT_BUFFER ) { yyensure_buffer_stack (); YY_CURRENT_BUFFER_LVALUE = - yy_create_buffer(yyin,YY_BUF_SIZE ); + yy_create_buffer( yyin, YY_BUF_SIZE ); } - yy_load_buffer_state( ); + yy_load_buffer_state( ); } - while ( 1 ) /* loops until end-of-file is reached */ + { +#line 101 "cod/cod.l" + + + +#line 995 "/ccs/home/eisen/ffs/build/lex.yy.c" + + while ( /*CONSTCOND*/1 ) /* loops until end-of-file is reached */ { yy_cp = (yy_c_buf_p); @@ -1011,7 +1010,7 @@ YY_DECL yy_match: do { - register YY_CHAR yy_c = yy_ec[YY_SC_TO_UI(*yy_cp)]; + YY_CHAR yy_c = yy_ec[YY_SC_TO_UI(*yy_cp)] ; if ( yy_accept[yy_current_state] ) { (yy_last_accepting_state) = yy_current_state; @@ -1021,9 +1020,9 @@ YY_DECL { yy_current_state = (int) yy_def[yy_current_state]; if ( yy_current_state >= 284 ) - yy_c = yy_meta[(unsigned int) yy_c]; + yy_c = yy_meta[yy_c]; } - yy_current_state = yy_nxt[yy_base[yy_current_state] + (unsigned int) yy_c]; + yy_current_state = yy_nxt[yy_base[yy_current_state] + yy_c]; ++yy_cp; } while ( yy_base[yy_current_state] != 615 ); @@ -1052,352 +1051,352 @@ YY_DECL case 1: YY_RULE_SETUP -#line 106 "cod/cod.l" +#line 104 "cod/cod.l" {RETURN(ARROW);} YY_BREAK case 2: YY_RULE_SETUP -#line 107 "cod/cod.l" +#line 105 "cod/cod.l" {RETURN(LPAREN);} YY_BREAK case 3: YY_RULE_SETUP -#line 108 "cod/cod.l" +#line 106 "cod/cod.l" {RETURN(RPAREN);} YY_BREAK case 4: YY_RULE_SETUP -#line 109 "cod/cod.l" +#line 107 "cod/cod.l" {RETURN(LBRACKET);} YY_BREAK case 5: YY_RULE_SETUP -#line 110 "cod/cod.l" +#line 108 "cod/cod.l" {RETURN(RBRACKET);} YY_BREAK case 6: YY_RULE_SETUP -#line 111 "cod/cod.l" +#line 109 "cod/cod.l" {RETURN(DOTDOTDOT);} YY_BREAK case 7: YY_RULE_SETUP -#line 112 "cod/cod.l" +#line 110 "cod/cod.l" {RETURN(DOT);} YY_BREAK case 8: YY_RULE_SETUP -#line 113 "cod/cod.l" +#line 111 "cod/cod.l" {RETURN(COMMA);} YY_BREAK case 9: YY_RULE_SETUP -#line 114 "cod/cod.l" +#line 112 "cod/cod.l" {RETURN(STAR);} YY_BREAK case 10: YY_RULE_SETUP -#line 115 "cod/cod.l" +#line 113 "cod/cod.l" {RETURN(AT);} YY_BREAK case 11: YY_RULE_SETUP -#line 116 "cod/cod.l" +#line 114 "cod/cod.l" {RETURN(SLASH);} YY_BREAK case 12: YY_RULE_SETUP -#line 117 "cod/cod.l" +#line 115 "cod/cod.l" {RETURN(MODULUS);} YY_BREAK case 13: YY_RULE_SETUP -#line 118 "cod/cod.l" +#line 116 "cod/cod.l" {RETURN(PLUS);} YY_BREAK case 14: YY_RULE_SETUP -#line 119 "cod/cod.l" +#line 117 "cod/cod.l" {RETURN(MINUS);} YY_BREAK case 15: YY_RULE_SETUP -#line 120 "cod/cod.l" +#line 118 "cod/cod.l" {RETURN(TILDE);} YY_BREAK case 16: YY_RULE_SETUP -#line 121 "cod/cod.l" +#line 119 "cod/cod.l" {RETURN(LEQ);} YY_BREAK case 17: YY_RULE_SETUP -#line 122 "cod/cod.l" +#line 120 "cod/cod.l" {RETURN(LT);} YY_BREAK case 18: YY_RULE_SETUP -#line 123 "cod/cod.l" +#line 121 "cod/cod.l" {RETURN(GEQ);} YY_BREAK case 19: YY_RULE_SETUP -#line 124 "cod/cod.l" +#line 122 "cod/cod.l" {RETURN(GT);} YY_BREAK case 20: YY_RULE_SETUP -#line 125 "cod/cod.l" +#line 123 "cod/cod.l" {RETURN(LEFT_SHIFT);} YY_BREAK case 21: YY_RULE_SETUP -#line 126 "cod/cod.l" +#line 124 "cod/cod.l" {RETURN(RIGHT_SHIFT);} YY_BREAK case 22: YY_RULE_SETUP -#line 127 "cod/cod.l" +#line 125 "cod/cod.l" {RETURN(EQ);} YY_BREAK case 23: YY_RULE_SETUP -#line 128 "cod/cod.l" +#line 126 "cod/cod.l" {RETURN(NEQ);} YY_BREAK case 24: YY_RULE_SETUP -#line 129 "cod/cod.l" +#line 127 "cod/cod.l" {RETURN(ASSIGN);} YY_BREAK case 25: YY_RULE_SETUP -#line 130 "cod/cod.l" +#line 128 "cod/cod.l" {RETURN(MUL_ASSIGN);} YY_BREAK case 26: YY_RULE_SETUP -#line 131 "cod/cod.l" +#line 129 "cod/cod.l" {RETURN(DIV_ASSIGN);} YY_BREAK case 27: YY_RULE_SETUP -#line 132 "cod/cod.l" +#line 130 "cod/cod.l" {RETURN(MOD_ASSIGN);} YY_BREAK case 28: YY_RULE_SETUP -#line 133 "cod/cod.l" +#line 131 "cod/cod.l" {RETURN(ADD_ASSIGN);} YY_BREAK case 29: YY_RULE_SETUP -#line 134 "cod/cod.l" +#line 132 "cod/cod.l" {RETURN(SUB_ASSIGN);} YY_BREAK case 30: YY_RULE_SETUP -#line 135 "cod/cod.l" +#line 133 "cod/cod.l" {RETURN(LEFT_ASSIGN);} YY_BREAK case 31: YY_RULE_SETUP -#line 136 "cod/cod.l" +#line 134 "cod/cod.l" {RETURN(RIGHT_ASSIGN);} YY_BREAK case 32: YY_RULE_SETUP -#line 137 "cod/cod.l" +#line 135 "cod/cod.l" {RETURN(AND_ASSIGN);} YY_BREAK case 33: YY_RULE_SETUP -#line 138 "cod/cod.l" +#line 136 "cod/cod.l" {RETURN(XOR_ASSIGN);} YY_BREAK case 34: YY_RULE_SETUP -#line 139 "cod/cod.l" +#line 137 "cod/cod.l" {RETURN(OR_ASSIGN);} YY_BREAK case 35: YY_RULE_SETUP -#line 140 "cod/cod.l" +#line 138 "cod/cod.l" {RETURN(LOG_OR);} YY_BREAK case 36: YY_RULE_SETUP -#line 141 "cod/cod.l" +#line 139 "cod/cod.l" {RETURN(LOG_AND);} YY_BREAK case 37: YY_RULE_SETUP -#line 142 "cod/cod.l" +#line 140 "cod/cod.l" {RETURN(ARITH_OR);} YY_BREAK case 38: YY_RULE_SETUP -#line 143 "cod/cod.l" +#line 141 "cod/cod.l" {RETURN(ARITH_AND);} YY_BREAK case 39: YY_RULE_SETUP -#line 144 "cod/cod.l" +#line 142 "cod/cod.l" {RETURN(ARITH_XOR);} YY_BREAK case 40: YY_RULE_SETUP -#line 145 "cod/cod.l" +#line 143 "cod/cod.l" {RETURN(INC_OP);} YY_BREAK case 41: YY_RULE_SETUP -#line 146 "cod/cod.l" +#line 144 "cod/cod.l" {RETURN(DEC_OP);} YY_BREAK case 42: YY_RULE_SETUP -#line 147 "cod/cod.l" +#line 145 "cod/cod.l" {RETURN(SEMI);} YY_BREAK case 43: YY_RULE_SETUP -#line 148 "cod/cod.l" +#line 146 "cod/cod.l" {RETURN(IF);} YY_BREAK case 44: YY_RULE_SETUP -#line 149 "cod/cod.l" +#line 147 "cod/cod.l" {RETURN(ELSE);} YY_BREAK case 45: YY_RULE_SETUP -#line 150 "cod/cod.l" +#line 148 "cod/cod.l" {RETURN(FOR);} YY_BREAK case 46: YY_RULE_SETUP -#line 151 "cod/cod.l" +#line 149 "cod/cod.l" {RETURN(WHILE);} YY_BREAK case 47: YY_RULE_SETUP -#line 152 "cod/cod.l" +#line 150 "cod/cod.l" {RETURN(DO);} YY_BREAK case 48: YY_RULE_SETUP -#line 153 "cod/cod.l" +#line 151 "cod/cod.l" {RETURN(UNSIGNED);} YY_BREAK case 49: YY_RULE_SETUP -#line 154 "cod/cod.l" +#line 152 "cod/cod.l" {RETURN(SIGNED);} YY_BREAK case 50: YY_RULE_SETUP -#line 155 "cod/cod.l" +#line 153 "cod/cod.l" {RETURN(SHORT);} YY_BREAK case 51: YY_RULE_SETUP -#line 156 "cod/cod.l" +#line 154 "cod/cod.l" {RETURN(INT);} YY_BREAK case 52: YY_RULE_SETUP -#line 157 "cod/cod.l" +#line 155 "cod/cod.l" {RETURN(LONG);} YY_BREAK case 53: YY_RULE_SETUP -#line 158 "cod/cod.l" +#line 156 "cod/cod.l" {RETURN(CHAR);} YY_BREAK case 54: YY_RULE_SETUP -#line 159 "cod/cod.l" +#line 157 "cod/cod.l" {RETURN(STRING);} YY_BREAK case 55: YY_RULE_SETUP -#line 160 "cod/cod.l" +#line 158 "cod/cod.l" {RETURN(FLOAT);} YY_BREAK case 56: YY_RULE_SETUP -#line 161 "cod/cod.l" +#line 159 "cod/cod.l" {RETURN(DOUBLE);} YY_BREAK case 57: YY_RULE_SETUP -#line 162 "cod/cod.l" +#line 160 "cod/cod.l" {RETURN(VOID);} YY_BREAK case 58: YY_RULE_SETUP -#line 163 "cod/cod.l" +#line 161 "cod/cod.l" {RETURN(STATIC);} YY_BREAK case 59: YY_RULE_SETUP -#line 164 "cod/cod.l" +#line 162 "cod/cod.l" {RETURN(EXTERN_TOKEN);} YY_BREAK case 60: YY_RULE_SETUP -#line 165 "cod/cod.l" +#line 163 "cod/cod.l" {RETURN(TYPEDEF);} YY_BREAK case 61: YY_RULE_SETUP -#line 166 "cod/cod.l" +#line 164 "cod/cod.l" {RETURN(CONTINUE);} YY_BREAK case 62: YY_RULE_SETUP -#line 167 "cod/cod.l" +#line 165 "cod/cod.l" {RETURN(BREAK);} YY_BREAK case 63: YY_RULE_SETUP -#line 168 "cod/cod.l" +#line 166 "cod/cod.l" {RETURN(GOTO);} YY_BREAK case 64: YY_RULE_SETUP -#line 169 "cod/cod.l" +#line 167 "cod/cod.l" {RETURN(CONST);} YY_BREAK case 65: YY_RULE_SETUP -#line 170 "cod/cod.l" +#line 168 "cod/cod.l" {RETURN(SIZEOF);} YY_BREAK case 66: YY_RULE_SETUP -#line 171 "cod/cod.l" +#line 169 "cod/cod.l" {RETURN(STRUCT);} YY_BREAK case 67: YY_RULE_SETUP -#line 172 "cod/cod.l" +#line 170 "cod/cod.l" {RETURN(ENUM);} YY_BREAK case 68: YY_RULE_SETUP -#line 173 "cod/cod.l" +#line 171 "cod/cod.l" {RETURN(UNION);} YY_BREAK case 69: YY_RULE_SETUP -#line 174 "cod/cod.l" +#line 172 "cod/cod.l" {RETURN(RETURN_TOKEN);} YY_BREAK case 70: YY_RULE_SETUP -#line 175 "cod/cod.l" +#line 173 "cod/cod.l" { int count = 0; while(types && types[count]) count++; @@ -1407,27 +1406,27 @@ YY_RULE_SETUP YY_BREAK case 71: YY_RULE_SETUP -#line 181 "cod/cod.l" +#line 179 "cod/cod.l" {RETURN(RCURLY);} YY_BREAK case 72: YY_RULE_SETUP -#line 182 "cod/cod.l" +#line 180 "cod/cod.l" {RETURN(BANG);} YY_BREAK case 73: YY_RULE_SETUP -#line 183 "cod/cod.l" +#line 181 "cod/cod.l" {RETURN(COLON);} YY_BREAK case 74: YY_RULE_SETUP -#line 184 "cod/cod.l" +#line 182 "cod/cod.l" {RETURN(QUESTION);} YY_BREAK case 75: YY_RULE_SETUP -#line 185 "cod/cod.l" +#line 183 "cod/cod.l" { yylval.info.string = create_string_from_yytext(); if (is_defined_type(yylval.info.string)) { @@ -1441,7 +1440,7 @@ YY_RULE_SETUP YY_BREAK case 76: YY_RULE_SETUP -#line 196 "cod/cod.l" +#line 194 "cod/cod.l" { buffer_len = 20; string_buffer = malloc(20 + 1); @@ -1450,7 +1449,7 @@ YY_RULE_SETUP YY_BREAK case 77: YY_RULE_SETUP -#line 202 "cod/cod.l" +#line 200 "cod/cod.l" { /* saw closing quote - all done */ BEGIN(INITIAL); *string_buf_ptr = '\0'; @@ -1464,14 +1463,14 @@ YY_RULE_SETUP case 78: /* rule 78 can match eol */ YY_RULE_SETUP -#line 212 "cod/cod.l" +#line 210 "cod/cod.l" { yyerror("Unterminated string constant"); } YY_BREAK case 79: YY_RULE_SETUP -#line 216 "cod/cod.l" +#line 214 "cod/cod.l" { /* hex escape sequence */ int result; @@ -1488,7 +1487,7 @@ YY_RULE_SETUP YY_BREAK case 80: YY_RULE_SETUP -#line 230 "cod/cod.l" +#line 228 "cod/cod.l" { /* octal escape sequence */ int result; @@ -1505,45 +1504,45 @@ YY_RULE_SETUP YY_BREAK case 81: YY_RULE_SETUP -#line 244 "cod/cod.l" +#line 242 "cod/cod.l" { yyerror("bad character escape"); } YY_BREAK case 82: YY_RULE_SETUP -#line 248 "cod/cod.l" +#line 246 "cod/cod.l" {check_strbuf();*string_buf_ptr++ = '\n';} YY_BREAK case 83: YY_RULE_SETUP -#line 249 "cod/cod.l" +#line 247 "cod/cod.l" {check_strbuf();*string_buf_ptr++ = '\t';} YY_BREAK case 84: YY_RULE_SETUP -#line 250 "cod/cod.l" +#line 248 "cod/cod.l" {check_strbuf();*string_buf_ptr++ = '\r';} YY_BREAK case 85: YY_RULE_SETUP -#line 251 "cod/cod.l" +#line 249 "cod/cod.l" {check_strbuf();*string_buf_ptr++ = '\b';} YY_BREAK case 86: YY_RULE_SETUP -#line 252 "cod/cod.l" +#line 250 "cod/cod.l" {check_strbuf();*string_buf_ptr++ = '\f';} YY_BREAK case 87: /* rule 87 can match eol */ YY_RULE_SETUP -#line 254 "cod/cod.l" +#line 252 "cod/cod.l" {check_strbuf();*string_buf_ptr++ = yytext[1];} YY_BREAK case 88: YY_RULE_SETUP -#line 256 "cod/cod.l" +#line 254 "cod/cod.l" { char *yptr = yytext; @@ -1555,38 +1554,38 @@ YY_RULE_SETUP YY_BREAK case 89: YY_RULE_SETUP -#line 267 "cod/cod.l" +#line 265 "cod/cod.l" BEGIN(comment); YY_BREAK case 90: YY_RULE_SETUP -#line 269 "cod/cod.l" +#line 267 "cod/cod.l" {lex_offset += yyleng;} /* eat anything that's not a '*' */ YY_BREAK case 91: YY_RULE_SETUP -#line 270 "cod/cod.l" +#line 268 "cod/cod.l" {lex_offset += yyleng;} /* eat up '*'s not followed by '/'s */ YY_BREAK case 92: /* rule 92 can match eol */ YY_RULE_SETUP -#line 271 "cod/cod.l" +#line 269 "cod/cod.l" {++line_count;lex_offset = 1;} YY_BREAK case 93: YY_RULE_SETUP -#line 272 "cod/cod.l" +#line 270 "cod/cod.l" {lex_offset += yyleng;BEGIN(INITIAL);} YY_BREAK case 94: YY_RULE_SETUP -#line 273 "cod/cod.l" +#line 271 "cod/cod.l" { /* consume //-comment */ } YY_BREAK case 95: YY_RULE_SETUP -#line 275 "cod/cod.l" +#line 273 "cod/cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(character_constant); @@ -1594,7 +1593,7 @@ YY_RULE_SETUP YY_BREAK case 96: YY_RULE_SETUP -#line 279 "cod/cod.l" +#line 277 "cod/cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(integer_constant); @@ -1602,7 +1601,7 @@ YY_RULE_SETUP YY_BREAK case 97: YY_RULE_SETUP -#line 283 "cod/cod.l" +#line 281 "cod/cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(integer_constant); @@ -1610,7 +1609,7 @@ YY_RULE_SETUP YY_BREAK case 98: YY_RULE_SETUP -#line 288 "cod/cod.l" +#line 286 "cod/cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(integer_constant); @@ -1618,7 +1617,7 @@ YY_RULE_SETUP YY_BREAK case 99: YY_RULE_SETUP -#line 293 "cod/cod.l" +#line 291 "cod/cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(floating_constant); @@ -1626,7 +1625,7 @@ YY_RULE_SETUP YY_BREAK case 100: YY_RULE_SETUP -#line 297 "cod/cod.l" +#line 295 "cod/cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(floating_constant); @@ -1634,7 +1633,7 @@ YY_RULE_SETUP YY_BREAK case 101: YY_RULE_SETUP -#line 301 "cod/cod.l" +#line 299 "cod/cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(floating_constant); @@ -1642,7 +1641,7 @@ YY_RULE_SETUP YY_BREAK case 102: YY_RULE_SETUP -#line 305 "cod/cod.l" +#line 303 "cod/cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(floating_constant); @@ -1650,7 +1649,7 @@ YY_RULE_SETUP YY_BREAK case 103: YY_RULE_SETUP -#line 310 "cod/cod.l" +#line 308 "cod/cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(floating_constant); @@ -1658,7 +1657,7 @@ YY_RULE_SETUP YY_BREAK case 104: YY_RULE_SETUP -#line 315 "cod/cod.l" +#line 313 "cod/cod.l" { yylval.info.string = create_string_from_yytext(); RETURN(floating_constant); @@ -1666,21 +1665,21 @@ YY_RULE_SETUP YY_BREAK case 105: YY_RULE_SETUP -#line 320 "cod/cod.l" +#line 318 "cod/cod.l" {lex_offset += yyleng;} YY_BREAK case 106: /* rule 106 can match eol */ YY_RULE_SETUP -#line 321 "cod/cod.l" +#line 319 "cod/cod.l" {lex_offset = 1; line_count++;} YY_BREAK case 107: YY_RULE_SETUP -#line 322 "cod/cod.l" +#line 320 "cod/cod.l" ECHO; YY_BREAK -#line 1684 "/Users/eisen/prog/ffs/build/lex.yy.c" +#line 1682 "/ccs/home/eisen/ffs/build/lex.yy.c" case YY_STATE_EOF(INITIAL): case YY_STATE_EOF(string_cond): case YY_STATE_EOF(comment): @@ -1760,7 +1759,7 @@ case YY_STATE_EOF(comment): { (yy_did_buffer_switch_on_eof) = 0; - if ( yywrap( ) ) + if ( yywrap( ) ) { /* Note: because we've taken care in * yy_get_next_buffer() to have set up @@ -1813,6 +1812,7 @@ case YY_STATE_EOF(comment): "fatal flex scanner internal error--no action found" ); } /* end of action switch */ } /* end of scanning one token */ + } /* end of user's declarations */ } /* end of yylex */ /* yy_get_next_buffer - try to read in a new buffer @@ -1824,9 +1824,9 @@ case YY_STATE_EOF(comment): */ static int yy_get_next_buffer (void) { - register char *dest = YY_CURRENT_BUFFER_LVALUE->yy_ch_buf; - register char *source = (yytext_ptr); - register int number_to_move, i; + char *dest = YY_CURRENT_BUFFER_LVALUE->yy_ch_buf; + char *source = (yytext_ptr); + int number_to_move, i; int ret_val; if ( (yy_c_buf_p) > &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[(yy_n_chars) + 1] ) @@ -1855,7 +1855,7 @@ static int yy_get_next_buffer (void) /* Try to read more data. */ /* First move last chars to start of buffer. */ - number_to_move = (int) ((yy_c_buf_p) - (yytext_ptr)) - 1; + number_to_move = (int) ((yy_c_buf_p) - (yytext_ptr) - 1); for ( i = 0; i < number_to_move; ++i ) *(dest++) = *(source++); @@ -1868,21 +1868,21 @@ static int yy_get_next_buffer (void) else { - yy_size_t num_to_read = + int num_to_read = YY_CURRENT_BUFFER_LVALUE->yy_buf_size - number_to_move - 1; while ( num_to_read <= 0 ) { /* Not enough room in the buffer - grow it. */ /* just a shorter name for the current buffer */ - YY_BUFFER_STATE b = YY_CURRENT_BUFFER; + YY_BUFFER_STATE b = YY_CURRENT_BUFFER_LVALUE; int yy_c_buf_p_offset = (int) ((yy_c_buf_p) - b->yy_ch_buf); if ( b->yy_is_our_buffer ) { - yy_size_t new_size = b->yy_buf_size * 2; + int new_size = b->yy_buf_size * 2; if ( new_size <= 0 ) b->yy_buf_size += b->yy_buf_size / 8; @@ -1891,11 +1891,12 @@ static int yy_get_next_buffer (void) b->yy_ch_buf = (char *) /* Include room in for 2 EOB chars. */ - yyrealloc((void *) b->yy_ch_buf,b->yy_buf_size + 2 ); + yyrealloc( (void *) b->yy_ch_buf, + (yy_size_t) (b->yy_buf_size + 2) ); } else /* Can't grow it, we don't own it. */ - b->yy_ch_buf = 0; + b->yy_ch_buf = NULL; if ( ! b->yy_ch_buf ) YY_FATAL_ERROR( @@ -1923,7 +1924,7 @@ static int yy_get_next_buffer (void) if ( number_to_move == YY_MORE_ADJ ) { ret_val = EOB_ACT_END_OF_FILE; - yyrestart(yyin ); + yyrestart( yyin ); } else @@ -1937,12 +1938,15 @@ static int yy_get_next_buffer (void) else ret_val = EOB_ACT_CONTINUE_SCAN; - if ((yy_size_t) ((yy_n_chars) + number_to_move) > YY_CURRENT_BUFFER_LVALUE->yy_buf_size) { + if (((yy_n_chars) + number_to_move) > YY_CURRENT_BUFFER_LVALUE->yy_buf_size) { /* Extend the array by 50%, plus the number we really need. */ - yy_size_t new_size = (yy_n_chars) + number_to_move + ((yy_n_chars) >> 1); - YY_CURRENT_BUFFER_LVALUE->yy_ch_buf = (char *) yyrealloc((void *) YY_CURRENT_BUFFER_LVALUE->yy_ch_buf,new_size ); + int new_size = (yy_n_chars) + number_to_move + ((yy_n_chars) >> 1); + YY_CURRENT_BUFFER_LVALUE->yy_ch_buf = (char *) yyrealloc( + (void *) YY_CURRENT_BUFFER_LVALUE->yy_ch_buf, (yy_size_t) new_size ); if ( ! YY_CURRENT_BUFFER_LVALUE->yy_ch_buf ) YY_FATAL_ERROR( "out of dynamic memory in yy_get_next_buffer()" ); + /* "- 2" to take care of EOB's */ + YY_CURRENT_BUFFER_LVALUE->yy_buf_size = (int) (new_size - 2); } (yy_n_chars) += number_to_move; @@ -1958,14 +1962,14 @@ static int yy_get_next_buffer (void) static yy_state_type yy_get_previous_state (void) { - register yy_state_type yy_current_state; - register char *yy_cp; + yy_state_type yy_current_state; + char *yy_cp; yy_current_state = (yy_start); for ( yy_cp = (yytext_ptr) + YY_MORE_ADJ; yy_cp < (yy_c_buf_p); ++yy_cp ) { - register YY_CHAR yy_c = (*yy_cp ? yy_ec[YY_SC_TO_UI(*yy_cp)] : 1); + YY_CHAR yy_c = (*yy_cp ? yy_ec[YY_SC_TO_UI(*yy_cp)] : 1); if ( yy_accept[yy_current_state] ) { (yy_last_accepting_state) = yy_current_state; @@ -1975,9 +1979,9 @@ static int yy_get_next_buffer (void) { yy_current_state = (int) yy_def[yy_current_state]; if ( yy_current_state >= 284 ) - yy_c = yy_meta[(unsigned int) yy_c]; + yy_c = yy_meta[yy_c]; } - yy_current_state = yy_nxt[yy_base[yy_current_state] + (unsigned int) yy_c]; + yy_current_state = yy_nxt[yy_base[yy_current_state] + yy_c]; } return yy_current_state; @@ -1990,10 +1994,10 @@ static int yy_get_next_buffer (void) */ static yy_state_type yy_try_NUL_trans (yy_state_type yy_current_state ) { - register int yy_is_jam; - register char *yy_cp = (yy_c_buf_p); + int yy_is_jam; + char *yy_cp = (yy_c_buf_p); - register YY_CHAR yy_c = 1; + YY_CHAR yy_c = 1; if ( yy_accept[yy_current_state] ) { (yy_last_accepting_state) = yy_current_state; @@ -2003,17 +2007,19 @@ static int yy_get_next_buffer (void) { yy_current_state = (int) yy_def[yy_current_state]; if ( yy_current_state >= 284 ) - yy_c = yy_meta[(unsigned int) yy_c]; + yy_c = yy_meta[yy_c]; } - yy_current_state = yy_nxt[yy_base[yy_current_state] + (unsigned int) yy_c]; + yy_current_state = yy_nxt[yy_base[yy_current_state] + yy_c]; yy_is_jam = (yy_current_state == 283); - return yy_is_jam ? 0 : yy_current_state; + return yy_is_jam ? 0 : yy_current_state; } - static void yyunput (int c, register char * yy_bp ) +#ifndef YY_NO_UNPUT + + static void yyunput (int c, char * yy_bp ) { - register char *yy_cp; + char *yy_cp; yy_cp = (yy_c_buf_p); @@ -2023,10 +2029,10 @@ static int yy_get_next_buffer (void) if ( yy_cp < YY_CURRENT_BUFFER_LVALUE->yy_ch_buf + 2 ) { /* need to shift things up to make room */ /* +2 for EOB chars. */ - register yy_size_t number_to_move = (yy_n_chars) + 2; - register char *dest = &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[ + int number_to_move = (yy_n_chars) + 2; + char *dest = &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[ YY_CURRENT_BUFFER_LVALUE->yy_buf_size + 2]; - register char *source = + char *source = &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[number_to_move]; while ( source > YY_CURRENT_BUFFER_LVALUE->yy_ch_buf ) @@ -2035,7 +2041,7 @@ static int yy_get_next_buffer (void) yy_cp += (int) (dest - source); yy_bp += (int) (dest - source); YY_CURRENT_BUFFER_LVALUE->yy_n_chars = - (yy_n_chars) = YY_CURRENT_BUFFER_LVALUE->yy_buf_size; + (yy_n_chars) = (int) YY_CURRENT_BUFFER_LVALUE->yy_buf_size; if ( yy_cp < YY_CURRENT_BUFFER_LVALUE->yy_ch_buf + 2 ) YY_FATAL_ERROR( "flex scanner push-back overflow" ); @@ -2048,6 +2054,8 @@ static int yy_get_next_buffer (void) (yy_c_buf_p) = yy_cp; } +#endif + #ifndef YY_NO_INPUT #ifdef __cplusplus static int yyinput (void) @@ -2072,7 +2080,7 @@ static int yy_get_next_buffer (void) else { /* need more input */ - yy_size_t offset = (yy_c_buf_p) - (yytext_ptr); + int offset = (int) ((yy_c_buf_p) - (yytext_ptr)); ++(yy_c_buf_p); switch ( yy_get_next_buffer( ) ) @@ -2089,13 +2097,13 @@ static int yy_get_next_buffer (void) */ /* Reset buffer status. */ - yyrestart(yyin ); + yyrestart( yyin ); /*FALLTHROUGH*/ case EOB_ACT_END_OF_FILE: { - if ( yywrap( ) ) + if ( yywrap( ) ) return 0; if ( ! (yy_did_buffer_switch_on_eof) ) @@ -2133,11 +2141,11 @@ static int yy_get_next_buffer (void) if ( ! YY_CURRENT_BUFFER ){ yyensure_buffer_stack (); YY_CURRENT_BUFFER_LVALUE = - yy_create_buffer(yyin,YY_BUF_SIZE ); + yy_create_buffer( yyin, YY_BUF_SIZE ); } - yy_init_buffer(YY_CURRENT_BUFFER,input_file ); - yy_load_buffer_state( ); + yy_init_buffer( YY_CURRENT_BUFFER, input_file ); + yy_load_buffer_state( ); } /** Switch to a different input buffer. @@ -2165,7 +2173,7 @@ static int yy_get_next_buffer (void) } YY_CURRENT_BUFFER_LVALUE = new_buffer; - yy_load_buffer_state( ); + yy_load_buffer_state( ); /* We don't actually know whether we did this switch during * EOF (yywrap()) processing, but the only time this flag @@ -2193,7 +2201,7 @@ static void yy_load_buffer_state (void) { YY_BUFFER_STATE b; - b = (YY_BUFFER_STATE) yyalloc(sizeof( struct yy_buffer_state ) ); + b = (YY_BUFFER_STATE) yyalloc( sizeof( struct yy_buffer_state ) ); if ( ! b ) YY_FATAL_ERROR( "out of dynamic memory in yy_create_buffer()" ); @@ -2202,13 +2210,13 @@ static void yy_load_buffer_state (void) /* yy_ch_buf has to be 2 characters longer than the size given because * we need to put in 2 end-of-buffer characters. */ - b->yy_ch_buf = (char *) yyalloc(b->yy_buf_size + 2 ); + b->yy_ch_buf = (char *) yyalloc( (yy_size_t) (b->yy_buf_size + 2) ); if ( ! b->yy_ch_buf ) YY_FATAL_ERROR( "out of dynamic memory in yy_create_buffer()" ); b->yy_is_our_buffer = 1; - yy_init_buffer(b,file ); + yy_init_buffer( b, file ); return b; } @@ -2227,15 +2235,11 @@ static void yy_load_buffer_state (void) YY_CURRENT_BUFFER_LVALUE = (YY_BUFFER_STATE) 0; if ( b->yy_is_our_buffer ) - yyfree((void *) b->yy_ch_buf ); + yyfree( (void *) b->yy_ch_buf ); - yyfree((void *) b ); + yyfree( (void *) b ); } -#ifndef __cplusplus -extern int isatty (int ); -#endif /* __cplusplus */ - /* Initializes or reinitializes a buffer. * This function is sometimes called more than once on the same buffer, * such as during a yyrestart() or at EOF. @@ -2245,7 +2249,7 @@ extern int isatty (int ); { int oerrno = errno; - yy_flush_buffer(b ); + yy_flush_buffer( b ); b->yy_input_file = file; b->yy_fill_buffer = 1; @@ -2288,7 +2292,7 @@ extern int isatty (int ); b->yy_buffer_status = YY_BUFFER_NEW; if ( b == YY_CURRENT_BUFFER ) - yy_load_buffer_state( ); + yy_load_buffer_state( ); } /** Pushes the new state onto the stack. The new state becomes @@ -2319,7 +2323,7 @@ void yypush_buffer_state (YY_BUFFER_STATE new_buffer ) YY_CURRENT_BUFFER_LVALUE = new_buffer; /* copied from yy_switch_to_buffer. */ - yy_load_buffer_state( ); + yy_load_buffer_state( ); (yy_did_buffer_switch_on_eof) = 1; } @@ -2338,7 +2342,7 @@ void yypop_buffer_state (void) --(yy_buffer_stack_top); if (YY_CURRENT_BUFFER) { - yy_load_buffer_state( ); + yy_load_buffer_state( ); (yy_did_buffer_switch_on_eof) = 1; } } @@ -2356,15 +2360,15 @@ static void yyensure_buffer_stack (void) * scanner will even need a stack. We use 2 instead of 1 to avoid an * immediate realloc on the next call. */ - num_to_alloc = 1; + num_to_alloc = 1; /* After all that talk, this was set to 1 anyways... */ (yy_buffer_stack) = (struct yy_buffer_state**)yyalloc (num_to_alloc * sizeof(struct yy_buffer_state*) ); if ( ! (yy_buffer_stack) ) YY_FATAL_ERROR( "out of dynamic memory in yyensure_buffer_stack()" ); - + memset((yy_buffer_stack), 0, num_to_alloc * sizeof(struct yy_buffer_state*)); - + (yy_buffer_stack_max) = num_to_alloc; (yy_buffer_stack_top) = 0; return; @@ -2373,7 +2377,7 @@ static void yyensure_buffer_stack (void) if ((yy_buffer_stack_top) >= ((yy_buffer_stack_max)) - 1){ /* Increase the buffer to prepare for a possible push. */ - int grow_size = 8 /* arbitrary grow size */; + yy_size_t grow_size = 8 /* arbitrary grow size */; num_to_alloc = (yy_buffer_stack_max) + grow_size; (yy_buffer_stack) = (struct yy_buffer_state**)yyrealloc @@ -2393,7 +2397,7 @@ static void yyensure_buffer_stack (void) * @param base the character buffer * @param size the size in bytes of the character buffer * - * @return the newly allocated buffer state object. + * @return the newly allocated buffer state object. */ YY_BUFFER_STATE yy_scan_buffer (char * base, yy_size_t size ) { @@ -2403,23 +2407,23 @@ YY_BUFFER_STATE yy_scan_buffer (char * base, yy_size_t size ) base[size-2] != YY_END_OF_BUFFER_CHAR || base[size-1] != YY_END_OF_BUFFER_CHAR ) /* They forgot to leave room for the EOB's. */ - return 0; + return NULL; - b = (YY_BUFFER_STATE) yyalloc(sizeof( struct yy_buffer_state ) ); + b = (YY_BUFFER_STATE) yyalloc( sizeof( struct yy_buffer_state ) ); if ( ! b ) YY_FATAL_ERROR( "out of dynamic memory in yy_scan_buffer()" ); - b->yy_buf_size = size - 2; /* "- 2" to take care of EOB's */ + b->yy_buf_size = (int) (size - 2); /* "- 2" to take care of EOB's */ b->yy_buf_pos = b->yy_ch_buf = base; b->yy_is_our_buffer = 0; - b->yy_input_file = 0; + b->yy_input_file = NULL; b->yy_n_chars = b->yy_buf_size; b->yy_is_interactive = 0; b->yy_at_bol = 1; b->yy_fill_buffer = 0; b->yy_buffer_status = YY_BUFFER_NEW; - yy_switch_to_buffer(b ); + yy_switch_to_buffer( b ); return b; } @@ -2432,28 +2436,29 @@ YY_BUFFER_STATE yy_scan_buffer (char * base, yy_size_t size ) * @note If you want to scan bytes that may contain NUL values, then use * yy_scan_bytes() instead. */ -YY_BUFFER_STATE yy_scan_string (yyconst char * yystr ) +YY_BUFFER_STATE yy_scan_string (const char * yystr ) { - return yy_scan_bytes(yystr,strlen(yystr) ); + return yy_scan_bytes( yystr, (int) strlen(yystr) ); } /** Setup the input buffer state to scan the given bytes. The next call to yylex() will * scan from a @e copy of @a bytes. - * @param bytes the byte buffer to scan - * @param len the number of bytes in the buffer pointed to by @a bytes. + * @param yybytes the byte buffer to scan + * @param _yybytes_len the number of bytes in the buffer pointed to by @a bytes. * * @return the newly allocated buffer state object. */ -YY_BUFFER_STATE yy_scan_bytes (yyconst char * yybytes, yy_size_t _yybytes_len ) +YY_BUFFER_STATE yy_scan_bytes (const char * yybytes, int _yybytes_len ) { YY_BUFFER_STATE b; char *buf; - yy_size_t n, i; + yy_size_t n; + int i; /* Get memory for full buffer, including space for trailing EOB's. */ - n = _yybytes_len + 2; - buf = (char *) yyalloc(n ); + n = (yy_size_t) (_yybytes_len + 2); + buf = (char *) yyalloc( n ); if ( ! buf ) YY_FATAL_ERROR( "out of dynamic memory in yy_scan_bytes()" ); @@ -2462,7 +2467,7 @@ YY_BUFFER_STATE yy_scan_bytes (yyconst char * yybytes, yy_size_t _yybytes_len buf[_yybytes_len] = buf[_yybytes_len+1] = YY_END_OF_BUFFER_CHAR; - b = yy_scan_buffer(buf,n ); + b = yy_scan_buffer( buf, n ); if ( ! b ) YY_FATAL_ERROR( "bad buffer in yy_scan_bytes()" ); @@ -2478,9 +2483,9 @@ YY_BUFFER_STATE yy_scan_bytes (yyconst char * yybytes, yy_size_t _yybytes_len #define YY_EXIT_FAILURE 2 #endif -static void yy_fatal_error (yyconst char* msg ) +static void yynoreturn yy_fatal_error (const char* msg ) { - (void) fprintf( stderr, "%s\n", msg ); + fprintf( stderr, "%s\n", msg ); exit( YY_EXIT_FAILURE ); } @@ -2508,7 +2513,7 @@ static void yy_fatal_error (yyconst char* msg ) */ int yyget_lineno (void) { - + return yylineno; } @@ -2531,7 +2536,7 @@ FILE *yyget_out (void) /** Get the length of the current token. * */ -yy_size_t yyget_leng (void) +int yyget_leng (void) { return yyleng; } @@ -2546,29 +2551,29 @@ char *yyget_text (void) } /** Set the current line number. - * @param line_number + * @param _line_number line number * */ -void yyset_lineno (int line_number ) +void yyset_lineno (int _line_number ) { - yylineno = line_number; + yylineno = _line_number; } /** Set the input stream. This does not discard the current * input buffer. - * @param in_str A readable stream. + * @param _in_str A readable stream. * * @see yy_switch_to_buffer */ -void yyset_in (FILE * in_str ) +void yyset_in (FILE * _in_str ) { - yyin = in_str ; + yyin = _in_str ; } -void yyset_out (FILE * out_str ) +void yyset_out (FILE * _out_str ) { - yyout = out_str ; + yyout = _out_str ; } int yyget_debug (void) @@ -2576,9 +2581,9 @@ int yyget_debug (void) return yy_flex_debug; } -void yyset_debug (int bdebug ) +void yyset_debug (int _bdebug ) { - yy_flex_debug = bdebug ; + yy_flex_debug = _bdebug ; } static int yy_init_globals (void) @@ -2587,10 +2592,10 @@ static int yy_init_globals (void) * This function is called from yylex_destroy(), so don't allocate here. */ - (yy_buffer_stack) = 0; + (yy_buffer_stack) = NULL; (yy_buffer_stack_top) = 0; (yy_buffer_stack_max) = 0; - (yy_c_buf_p) = (char *) 0; + (yy_c_buf_p) = NULL; (yy_init) = 0; (yy_start) = 0; @@ -2599,8 +2604,8 @@ static int yy_init_globals (void) yyin = stdin; yyout = stdout; #else - yyin = (FILE *) 0; - yyout = (FILE *) 0; + yyin = NULL; + yyout = NULL; #endif /* For future reference: Set errno on error, since we are called by @@ -2615,7 +2620,7 @@ int yylex_destroy (void) /* Pop the buffer stack, destroying each element. */ while(YY_CURRENT_BUFFER){ - yy_delete_buffer(YY_CURRENT_BUFFER ); + yy_delete_buffer( YY_CURRENT_BUFFER ); YY_CURRENT_BUFFER_LVALUE = NULL; yypop_buffer_state(); } @@ -2636,18 +2641,19 @@ int yylex_destroy (void) */ #ifndef yytext_ptr -static void yy_flex_strncpy (char* s1, yyconst char * s2, int n ) +static void yy_flex_strncpy (char* s1, const char * s2, int n ) { - register int i; + + int i; for ( i = 0; i < n; ++i ) s1[i] = s2[i]; } #endif #ifdef YY_NEED_STRLEN -static int yy_flex_strlen (yyconst char * s ) +static int yy_flex_strlen (const char * s ) { - register int n; + int n; for ( n = 0; s[n]; ++n ) ; @@ -2657,11 +2663,12 @@ static int yy_flex_strlen (yyconst char * s ) void *yyalloc (yy_size_t size ) { - return (void *) malloc( size ); + return malloc(size); } void *yyrealloc (void * ptr, yy_size_t size ) { + /* The cast to (char *) in the following accommodates both * implementations that use char* generic pointers, and those * that use void* generic pointers. It works with the latter @@ -2669,18 +2676,17 @@ void *yyrealloc (void * ptr, yy_size_t size ) * any pointer type to void*, and deal with argument conversions * as though doing an assignment. */ - return (void *) realloc( (char *) ptr, size ); + return realloc(ptr, size); } void yyfree (void * ptr ) { - free( (char *) ptr ); /* see yyrealloc() for (char *) cast */ + free( (char *) ptr ); /* see yyrealloc() for (char *) cast */ } #define YYTABLES_NAME "yytables" -#line 322 "cod/cod.l" - +#line 320 "cod/cod.l" static char *create_string_from_yytext() { @@ -2691,7 +2697,7 @@ static char *create_string_from_yytext() static void check_strbuf() { - int cur_len = string_buf_ptr - string_buffer; + intptr_t cur_len = string_buf_ptr - string_buffer; if ((cur_len + 1) == buffer_len) { buffer_len += 20; string_buffer = realloc(string_buffer, buffer_len + 1); @@ -2723,87 +2729,21 @@ yywrap YY_PROTO(( void )) } -#ifndef input /* flex, not lex */ void yy_delete_buffer YY_PROTO((YY_BUFFER_STATE b)); -#ifdef WINNT -/* old Windows code for MKS Toolkit version of flex */ - -static void -terminate_string_parse() -{ - yyrestart(NULL); -} - -#ifdef YY_USE_PROTOS -static void *yy_flex_alloc( yy_size_t size ) -#else -static void *yy_flex_alloc( size ) -yy_size_t size; -#endif - { - return (void *) malloc( size ); - } - -static char* current_input_string; - -int my_yy_input(buf,result,max_size) { - - if (current_input_string == NULL) - { - - result = 0; - } - else - if (max_size < strlen(current_input_string)) - { - memcpy((void*)buf, current_input_string, max_size); - current_input_string += max_size; - result = max_size; - } else { - int n = strlen(current_input_string); - memcpy((void*)buf, current_input_string, n+1); - current_input_string = NULL; - result = n; - } - -/* printf("my_yy_input buf[%s],result[%d]\n",buf,result);*/ - return result; -} - -static void -setup_for_string_parse(string, defined_types, enum_constants) -const char *string; -char **defined_types; -char **enum_constants; -{ - type_count = defined_type_count; - types = defined_types; - enums = enum_constants; - - current_input_string = string; - lex_offset = 1; - line_count = 1; -} -#else static YY_BUFFER_STATE bb = NULL; static void -reset_types_table(defined_types, enumerated_constants) -char **defined_types; -char **enumerated_constants; +reset_types_table(char **defined_types, char **enumerated_constants) { types = defined_types; enums = enumerated_constants; } static void -setup_for_string_parse(string, defined_types, enum_constants) -const char *string; -char **defined_types; -char **enum_constants; +setup_for_string_parse(const char *string, char **defined_types, char **enum_constants) { types = defined_types; enums = enum_constants; @@ -2824,6 +2764,4 @@ terminate_string_parse() } } -#endif -#endif From 87ab25ed899b27b80fede3dba66b18b4bd5755c4 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Tue, 15 Aug 2023 14:50:32 -0400 Subject: [PATCH 084/183] cmake: correct info.h installation path --- source/adios2/CMakeLists.txt | 5 ----- 1 file changed, 5 deletions(-) diff --git a/source/adios2/CMakeLists.txt b/source/adios2/CMakeLists.txt index 8ce49a6904..eb55d7b1e4 100644 --- a/source/adios2/CMakeLists.txt +++ b/source/adios2/CMakeLists.txt @@ -416,11 +416,6 @@ install(FILES common/ADIOSMacros.h common/ADIOSTypes.h common/ADIOSTypes.inl install(DIRECTORY core/ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/adios2/core COMPONENT adios2_core-development FILES_MATCHING PATTERN "*.h" - PATTERN "Info.h" EXCLUDE -) - -install(FILES core/Info.h - DESTINATION ${CMAKE_INSTALL_INCLUDEDIR} COMPONENT adios2_core-development ) install(DIRECTORY engine/ From 6225fb9eda1c8ad974cb20c7c9124e2221bd4a51 Mon Sep 17 00:00:00 2001 From: Norbert Podhorszki Date: Sat, 12 Aug 2023 13:48:44 -0400 Subject: [PATCH 085/183] bp5dbg parse records and check sizes during it for mmd.0 and md.0. No decoding FFS records. --- source/utils/bp5dbg/CMakeLists.txt | 1 + source/utils/bp5dbg/adios2/bp5dbg/__init__.py | 1 + source/utils/bp5dbg/adios2/bp5dbg/idxtable.py | 114 +++- source/utils/bp5dbg/adios2/bp5dbg/metadata.py | 610 ++---------------- .../bp5dbg/adios2/bp5dbg/metametadata.py | 52 ++ source/utils/bp5dbg/adios2/bp5dbg/utils.py | 5 +- source/utils/bp5dbg/bp5dbg.py | 87 ++- 7 files changed, 274 insertions(+), 596 deletions(-) create mode 100644 source/utils/bp5dbg/adios2/bp5dbg/metametadata.py diff --git a/source/utils/bp5dbg/CMakeLists.txt b/source/utils/bp5dbg/CMakeLists.txt index 7cd62825dd..83bdcdc0c6 100644 --- a/source/utils/bp5dbg/CMakeLists.txt +++ b/source/utils/bp5dbg/CMakeLists.txt @@ -8,6 +8,7 @@ install( adios2/bp5dbg/data.py adios2/bp5dbg/utils.py adios2/bp5dbg/metadata.py + adios2/bp5dbg/metametadata.py adios2/bp5dbg/idxtable.py DESTINATION ${CMAKE_INSTALL_PYTHONDIR}/adios2/bp5dbg COMPONENT adios2_scripts-runtime ) diff --git a/source/utils/bp5dbg/adios2/bp5dbg/__init__.py b/source/utils/bp5dbg/adios2/bp5dbg/__init__.py index eb13414f08..d9103f9a37 100644 --- a/source/utils/bp5dbg/adios2/bp5dbg/__init__.py +++ b/source/utils/bp5dbg/adios2/bp5dbg/__init__.py @@ -1,3 +1,4 @@ from .data import * from .idxtable import * from .metadata import * +from .metametadata import * diff --git a/source/utils/bp5dbg/adios2/bp5dbg/idxtable.py b/source/utils/bp5dbg/adios2/bp5dbg/idxtable.py index 7d2854e7e8..d6eee886de 100644 --- a/source/utils/bp5dbg/adios2/bp5dbg/idxtable.py +++ b/source/utils/bp5dbg/adios2/bp5dbg/idxtable.py @@ -1,10 +1,25 @@ from ast import Sub -import numpy as np from os import fstat + +import numpy as np + from .utils import * +# metadata index table (list of dictionary) +# step: step (superfluous, since list idx = step) +# mdpos: pos in metadata file for step +# mdsize: size of metadata +# flush_count: flush count +# writermapindex: entry in WriterMap relevant for this step -def ReadWriterMap(bytearray, pos): +# WriterMap table (list of dictionary) +# StartStep: this entry is valid from this step +# WriterCount: number of writers +# AggregatorCount: number of aggregators +# SubfilesCount: number of subfiles + + +def ReadWriterMap(bytearray, pos, verbose): data = np.frombuffer(bytearray, dtype=np.uint64, count=3, offset=pos) WriterCount = int(data[0]) @@ -12,24 +27,25 @@ def ReadWriterMap(bytearray, pos): SubfileCount = int(data[2]) pos = pos + 3 * 8 - print(" WriterMap: Writers = {0} Aggregators = {1} Subfiles = {2}" - .format(WriterCount, AggregatorCount, SubfileCount)) data = np.frombuffer(bytearray, dtype=np.uint64, count=WriterCount, offset=pos) - print(" =====================") - print(" | Rank | Subfile |") - print(" ---------------------") - for r in range(0, WriterCount): - rank = str(r).rjust(7) - sub = str(data[r]).rjust(8) - print(" |" + rank + " | " + sub + " |") - print(" =====================") + if verbose: + print(" WriterMap: Writers = {0} Aggregators = {1} Subfiles = {2}" + .format(WriterCount, AggregatorCount, SubfileCount)) + print(" =====================") + print(" | Rank | Subfile |") + print(" ---------------------") + for r in range(0, WriterCount): + rank = str(r).rjust(7) + sub = str(data[r]).rjust(8) + print(" |" + rank + " | " + sub + " |") + print(" =====================") pos = pos + WriterCount * 8 return pos, WriterCount, AggregatorCount, SubfileCount -def ReadIndex(f, fileSize): +def ReadIndex(f, fileSize, verbose): nBytes = fileSize - f.tell() if nBytes <= 0: return True @@ -37,15 +53,20 @@ def ReadIndex(f, fileSize): WriterCount = 0 pos = 0 step = 0 + MetadataIndexTable = [] + WriterMap = [] + WriterMapIdx = -1 while pos < nBytes: - print("-----------------------------------------------" + - "---------------------------------------------------") + if verbose: + print("-----------------------------------------------" + + "---------------------------------------------------") record = chr(table[pos]) pos = pos + 1 reclen = np.frombuffer(table, dtype=np.uint64, count=1, offset=pos) pos = pos + 8 - print("Record '{0}', length = {1}".format(record, reclen)) + if verbose: + print("Record '{0}', length = {1}".format(record, reclen)) if record == 's': # print("Step record, length = {0}".format(reclen)) data = np.frombuffer(table, dtype=np.uint64, count=3, @@ -56,9 +77,17 @@ def ReadIndex(f, fileSize): flushcount = str(data[2]).ljust(3) FlushCount = data[2] - print("| Step = " + stepstr + "| MetadataPos = " + mdatapos + - " | MetadataSize = " + mdatasize + " | FlushCount = " + - flushcount + "|") + md = {"step": step, + "mdpos": int(data[0]), + "mdsize": int(data[1]), + "flushcount": int(data[2]), + "writermapindex": WriterMapIdx} + MetadataIndexTable.append(md) + + if verbose: + print("| Step = " + stepstr + "| MetadataPos = " + mdatapos + + " | MetadataSize = " + mdatasize + " | FlushCount = " + + flushcount + "|") pos = pos + 3 * 8 @@ -73,44 +102,61 @@ def ReadIndex(f, fileSize): str(thiswriter[i * 2 + 1]) + "; ") start += "loc:" + str(thiswriter[int(FlushCount * 2)]) pos = int(pos + (FlushCount * 2 + 1) * 8) - print(start) + if verbose: + print(start) + step = step + 1 elif record == 'w': # print("WriterMap record") pos, WriterCount, AggregatorCount, SubfileCount = ReadWriterMap( - table, pos) + table, pos, verbose) + wmd = {"StartStep": step, + "WriterCount": WriterCount, + "AggregatorCount": AggregatorCount, + "SubfilesCount": SubfileCount} + WriterMap.append(wmd) + WriterMapIdx = WriterMapIdx + 1 elif record == 'm': - print("MetaMeta record") + if verbose: + print("MetaMeta record") else: - print("Unknown record {0}, lenght = {1}".format(record, reclen)) + if verbose: + print("Unknown record {0}, lenght = {1}".format( + record, reclen)) - print("---------------------------------------------------" + - "-----------------------------------------------") + if verbose: + print("---------------------------------------------------" + + "-----------------------------------------------") if fileSize - f.tell() > 1: print("ERROR: There are {0} bytes at the end of file" " that cannot be interpreted".format(fileSize - f.tell() - 1)) - return False + return False, MetadataIndexTable, WriterMap - return True + return True, MetadataIndexTable, WriterMap -def DumpIndexTable(fileName): - print("========================================================") - print(" Index Table File: " + fileName) - print("========================================================") +def DumpIndexTable(fileName, verbose): + if verbose: + print("========================================================") + print(" Index Table File: " + fileName) + print("========================================================") status = False + MetadataIndexTable = [] + WriterMap = [] with open(fileName, "rb") as f: fileSize = fstat(f.fileno()).st_size - status = ReadHeader(f, fileSize, "Index Table") + status = ReadHeader( + f, fileSize, "Index Table", verbose) if isinstance(status, list): status = status[0] if status: - status = ReadIndex(f, fileSize) - return status + status, MetadataIndexTable, WriterMap = ReadIndex( + f, fileSize, verbose) + return status, MetadataIndexTable, WriterMap if __name__ == "__main__": diff --git a/source/utils/bp5dbg/adios2/bp5dbg/metadata.py b/source/utils/bp5dbg/adios2/bp5dbg/metadata.py index e460e41bd0..ad8be5ced0 100644 --- a/source/utils/bp5dbg/adios2/bp5dbg/metadata.py +++ b/source/utils/bp5dbg/adios2/bp5dbg/metadata.py @@ -1,570 +1,92 @@ -import numpy as np from os import fstat -from .utils import * - - -def ReadEncodedStringFromBuffer(buf, pos, ID, limit, lenbytes=2): - # 'lenbytes' bytes length + string without \0 - if lenbytes == 1: - dt = np.dtype(np.uint8) - else: - dt = np.dtype(np.uint16) - namelen = np.frombuffer(buf, dtype=dt, count=1, offset=pos)[0] - pos = pos + lenbytes - if namelen > limit - lenbytes: - print("ERROR: " + ID + " string length ({0}) is longer than the " - "limit to stay inside the block ({1})".format( - namelen, limit - lenbytes)) - return False, "", namelen, pos - name = buf[pos:pos + namelen].decode('ascii') - pos = pos + namelen - return True, name, namelen, pos - - -def ReadEncodedStringArrayFromBuffer(buf, pos, ID, limit, nStrings): - s = [] - for i in range(nStrings): - # 2 bytes length + string without \0 - namelen = np.frombuffer(buf, dtype=np.uint16, count=1, offset=pos)[0] - pos = pos + 2 - if namelen > limit - 2: - print("ERROR: " + ID + " string length ({0}) is longer than the " - "limit to stay inside the block ({1})".format( - namelen, limit - 2)) - return False, s, pos - name = buf[pos:pos + namelen].decode('ascii') - pos = pos + namelen - limit = limit - namelen - 2 - s.append(name) - return True, s, pos - - -def ReadDimensionCharacteristics(buf, pos): - ndim = np.frombuffer(buf, dtype=np.uint8, count=1, offset=pos)[0] - pos = pos + 1 - lgo = np.zeros(ndim, dtype=np.uint64) - dimLen = np.frombuffer(buf, dtype=np.uint16, count=1, offset=pos)[0] - pos = pos + 2 - if dimLen != 24 * ndim: - print("ERROR: Encoded dimension length expected size = {0} bytes, " - "but found {1} bytes".format(24 * ndim, dimLen)) - return False, pos, ndim, lgo - - lgo = np.frombuffer(buf, dtype=np.uint64, count=3 * ndim, offset=pos) - pos = pos + 24 * ndim - return True, pos, ndim, lgo - - -def bDataToNumpyArray(cData, typeName, nElements, startPos=0): - if typeName == 'byte': - return np.frombuffer(cData, dtype=np.int8, count=nElements, - offset=startPos) - elif typeName == 'char': - return np.frombuffer(cData, dtype=np.uint8, count=nElements, - offset=startPos) - elif typeName == 'short': - return np.frombuffer(cData, dtype=np.int16, count=nElements, - offset=startPos) - elif typeName == 'integer': - return np.frombuffer(cData, dtype=np.int32, count=nElements, - offset=startPos) - elif typeName == 'long': - return np.frombuffer(cData, dtype=np.int64, count=nElements, - offset=startPos) - - elif typeName == 'unsigned_byte': - return np.frombuffer(cData, dtype=np.uint8, count=nElements, - offset=startPos) - elif typeName == 'unsigned_short': - return np.frombuffer(cData, dtype=np.uint16, count=nElements, - offset=startPos) - elif typeName == 'unsigned_integer': - return np.frombuffer(cData, dtype=np.uint32, count=nElements, - offset=startPos) - elif typeName == 'unsigned_long': - return np.frombuffer(cData, dtype=np.uint64, count=nElements, - offset=startPos) - - elif typeName == 'real': - return np.frombuffer(cData, dtype=np.float32, count=nElements, - offset=startPos) - elif typeName == 'double': - return np.frombuffer(cData, dtype=np.float64, count=nElements, - offset=startPos) - elif typeName == 'long_double': - return np.frombuffer(cData, dtype=np.float128, count=nElements, - offset=startPos) - - elif typeName == 'complex': - return np.frombuffer(cData, dtype=np.complex64, count=nElements, - offset=startPos) - elif typeName == 'double_complex': - return np.frombuffer(cData, dtype=np.complex128, count=nElements, - offset=startPos) - - else: - return np.zeros(1, dtype=np.uint32) - - -def ReadCharacteristicsFromMetaData(buf, idx, pos, limit, typeID, - fileOffset, isVarCharacteristics): - cStartPosition = pos - dataTypeName = GetTypeName(typeID) - print(" Block {0}: ".format(idx)) - print(" Starting offset : {0}".format(fileOffset)) - # 1 byte NCharacteristics - nChars = np.frombuffer(buf, dtype=np.uint8, count=1, offset=pos)[0] - pos = pos + 1 - print(" # of Characteristics : {0}".format(nChars)) - # 4 bytes length - charLen = np.frombuffer(buf, dtype=np.uint8, count=32, offset=pos)[0] - pos = pos + 4 - print(" Characteristics Length : {0}".format(charLen)) - # For attributes, we need to remember the dimensions and size - # when reading the value - ndim = 0 - nElems = 1 - - for i in range(nChars): - print(" Characteristics[{0}]".format(i)) - # 1 byte TYPE - cID = np.frombuffer(buf, dtype=np.uint8, count=1, offset=pos)[0] - pos = pos + 1 - cName = GetCharacteristicName(cID) - print(" Type : {0} ({1}) ".format( - cName, cID)) - cLen = GetCharacteristicDataLength(cID, typeID) - - if cName == 'dimensions': - status, pos, ndim, lgo = ReadDimensionCharacteristics(buf, pos) - if not status: - return status, pos - print(" # of Dims : {0}".format(ndim)) - if ndim > 0: - print(" Dims (lgo) : (", end="") - for d in range(ndim): - p = 3 * d - nElems = int(nElems * lgo[p]) # need for value later - print("{0}:{1}:{2}".format(lgo[p], lgo[p + 1], lgo[p + 2]), - end="") - if d < ndim - 1: - print(", ", end="") - else: - print(")") - - elif cName == 'value' or cName == 'min' or cName == 'max': - if dataTypeName == 'string': - namelimit = limit - (pos - cStartPosition) - status, s, sLen, pos = ReadEncodedStringFromBuffer( - buf, pos, "String Value", namelimit) - if not status: - return False, pos - print(" Value : '" + s + - "' ({0} bytes)".format(sLen)) - elif dataTypeName == 'string_array': - namelimit = limit - (pos - cStartPosition) - status, strList, pos = ReadEncodedStringArrayFromBuffer( - buf, pos, "String Array", namelimit, lgo[0]) - if not status: - return False, pos - print(" Value : [", end="") - for j in range(len(strList)): - print("'" + strList[j] + "'", end="") - if j < len(strList) - 1: - print(", ", end="") - print("]") - - else: - if isVarCharacteristics: - cData = buf[pos:pos + cLen] - pos = pos + cLen - data = bDataToNumpyArray(cData, dataTypeName, 1) - print(" Value : {0}" - " ({1} bytes)".format(data[0], cLen)) - else: # attribute value characteristics are different - dataTypeSize = GetTypeSize(typeID) - nBytes = int(nElems * dataTypeSize) - cData = buf[pos:pos + nBytes] - pos = pos + nBytes - data = bDataToNumpyArray(cData, dataTypeName, nElems) - print(" Value : [", end="") - for j in range(nElems): - print("{0}".format(data[j]), end="") - if j < nElems - 1: - print(", ", end="") - print("]") - - elif cName == 'offset' or cName == 'payload_offset': - cData = buf[pos:pos + cLen] - pos = pos + cLen - data = bDataToNumpyArray(cData, 'unsigned_long', 1) - print(" Value : {0} ({1} bytes)".format( - data[0], cLen)) - elif cName == 'time_index' or cName == 'file_index': - cData = buf[pos:pos + cLen] - pos = pos + cLen - data = bDataToNumpyArray(cData, 'unsigned_integer', 1) - print(" Value : {0} ({1} bytes)".format( - data[0], cLen)) - elif cName == 'minmax': - nBlocks = np.frombuffer( - buf, dtype=np.uint16, count=1, offset=pos)[0] - print(" nBlocks : {0}".format(nBlocks)) - pos = pos + 2 - bminmax = bDataToNumpyArray(buf, dataTypeName, 2, pos) - pos = pos + 2 * cLen - print(" Min/max : {0} / {1}".format( - bminmax[0], bminmax[1])) - if nBlocks > 1: - method = np.frombuffer(buf, dtype=np.uint8, - count=1, offset=pos)[0] - pos = pos + 1 - print(" Division method: {0}".format(method)) - blockSize = np.frombuffer(buf, dtype=np.uint64, - count=1, offset=pos)[0] - pos = pos + 8 - print(" Block size : {0}".format(blockSize)) - div = np.frombuffer(buf, dtype=np.uint16, - count=ndim, offset=pos) - pos = pos + 2 * ndim - print(" Division vector: (", end="") - for d in range(ndim): - print("{0}".format(div[d]), end="") - if d < ndim - 1: - print(", ", end="") - else: - print(")") - minmax = bDataToNumpyArray(buf, dataTypeName, 2 * nBlocks, pos) - pos = pos + 2 * nBlocks * cLen - for i in range(nBlocks): - print(" Min/max : {0} / {1}".format( - minmax[2 * i], minmax[2 * i + 1])) - elif cName == "transform_type": - # Operator name (8 bit length) - namelimit = limit - (pos - cStartPosition) - status, s, sLen, pos = ReadEncodedStringFromBuffer( - buf, pos, "Operator Name", namelimit, lenbytes=1) - if not status: - return False, pos - print(" Operator : '" + s + - "' ({0} bytes)".format(sLen)) - - # 1 byte TYPE - typeID = buf[pos] - pos = pos + 1 - print(" Pre-type : {0} ({1}) ".format( - GetTypeName(typeID), typeID)) - - # Pre-transform dimenstions - status, pos, ndim, lgo = ReadDimensionCharacteristics(buf, pos) - if not status: - return status, pos - print(" Pre-# of dims : {0}".format(ndim)) - if ndim > 0: - print(" Pre-Dims (lgo) : (", end="") - for d in range(ndim): - p = 3 * d - nElems = int(nElems * lgo[p]) # need for value later - print("{0}:{1}:{2}".format(lgo[p], lgo[p + 1], lgo[p + 2]), - end="") - if d < ndim - 1: - print(", ", end="") - else: - print(")") - - # Operator specific metadata - omdlen = np.frombuffer(buf, dtype=np.uint16, - count=1, offset=pos)[0] - pos = pos + 2 - print(" Op. data length: {0}".format(omdlen)) - pos = pos + omdlen - else: - print(" ERROR: could not understand this " - "characteristics type '{0}' id {1}".format(cName, cID)) - return True, pos - - -def ReadPGMD(buf, idx, pos, limit, pgStartOffset): - # Read one PG index group - pgStartPosition = pos - print(" PG {0}: ".format(idx)) - print(" Starting offset : {0}".format(pgStartOffset)) - - # 2 bytes PG Length + Name length - pgLength = np.frombuffer(buf, dtype=np.uint16, count=1, offset=pos)[0] - pos = pos + 2 - print( - " PG length : {0} bytes (+2 for length)".format( - pgLength)) - if pgStartPosition + pgLength + 2 > limit: - print("ERROR: There is not enough bytes {0} left in PG index block " - "to read this single PG index ({1} bytes)").format( - limit - pgStartPosition, pgLength) - return False, pos +import numpy as np - pgNameLen = np.frombuffer(buf, dtype=np.uint16, count=1, offset=pos)[0] - pos = pos + 2 - if pgStartPosition + pgNameLen > limit: - print("ERROR: There is not enough bytes {0} left in PG index block " - "to read the name of this single PG index ({1} bytes)").format( - limit - pos + 2, pgNameLen) - return False, pos +from .utils import * - pgName = buf[pos:pos + pgNameLen].decode('ascii') - pos = pos + pgNameLen - print(" PG Name : '" + pgName + - "' ({0} bytes)".format(pgNameLen)) - # ColumnMajor (host language Fortran) 1 byte, 'y' or 'n' - isColumnMajor = buf[pos] # this is an integer value - pos = pos + 1 - if isColumnMajor != ord('y') and isColumnMajor != ord('n'): - print( - "ERROR: Next byte for isColumnMajor must be 'y' or 'n' " - "but it isn't = {0} (={1})".format( - chr(isColumnMajor), isColumnMajor)) +def ReadMetadataStep(f, fileSize, MetadataEntry, WriterMapEntry): + # Read metadata of one step + step = MetadataEntry['step'] + mdpos = MetadataEntry['mdpos'] + mdsize = MetadataEntry['mdsize'] + flushcount = MetadataEntry['flushcount'] + WriterCount = WriterMapEntry['WriterCount'] + + if mdpos + mdsize > fileSize: + print(f"ERROR: step {step} metadata pos {mdpos} + size {mdsize} " + f"is beyond the metadata file size {fileSize}") return False - print(" isColumnMajor : " + chr(isColumnMajor)) - processID = np.frombuffer(buf, dtype=np.uint32, count=1, offset=pos)[0] - pos = pos + 4 - print(" process ID : {0}".format(processID)) + currentpos = f.tell() + if mdpos > currentpos: + print(f"Offset {currentpos}..{mdpos-1} is a gap unaccounted for") - pgTimeNameLen = np.frombuffer(buf, dtype=np.uint16, count=1, offset=pos)[0] - pos = pos + 2 - if pgStartPosition + pgTimeNameLen > limit: - print("ERROR: There is not enough bytes {0} left in PG index block " - "to read the name of this single PG index ({1} bytes)").format( - limit - pos + 2, pgTimeNameLen) - return False, pos - - pgTimeName = buf[pos:pos + pgTimeNameLen].decode('ascii') - pos = pos + pgTimeNameLen - print(" Timestep Name : '" + pgTimeName + - "' ({0} bytes)".format(pgTimeNameLen)) - - step = np.frombuffer(buf, dtype=np.uint32, count=1, offset=pos)[0] - pos = pos + 4 - print(" Step : {0}".format(step)) - - ptr = np.frombuffer(buf, dtype=np.uint64, count=1, offset=pos)[0] - pos = pos + 8 - print(" Offset in data : {0}".format(ptr)) - - return True, pos - - -def ReadVarMD(buf, idx, pos, limit, varStartOffset): - # Read one VAR index group - varStartPosition = pos - print(" Var {0}: ".format(idx)) - print(" Starting offset : {0}".format(varStartOffset)) - - # 4 bytes VAR Index Length - varLength = np.frombuffer(buf, dtype=np.uint32, count=1, offset=pos)[0] - pos = pos + 4 - print(" Var idx length : {0} bytes (+4 for idx length)".format( - varLength)) - if varStartPosition + varLength + 4 > limit: - print("ERROR: There is not enough bytes in Var index block " - "to read this single Var index") - return False, pos - - memberID = np.frombuffer(buf, dtype=np.uint32, count=1, offset=pos)[0] - pos = pos + 4 - print(" MemberID : {0}".format(memberID)) - - namelimit = limit - (pos - varStartPosition) - status, grpName, grpNameLen, pos = ReadEncodedStringFromBuffer( - buf, pos, "Group Name", namelimit) - if not status: - return False, pos - print(" Group Name : '" + grpName + - "' ({0} bytes)".format(grpNameLen)) - - namelimit = limit - (pos - varStartPosition) - status, varName, varNameLen, pos = ReadEncodedStringFromBuffer( - buf, pos, "Var Name", namelimit) - if not status: - return False, pos - print(" Var Name : '" + varName + - "' ({0} bytes)".format(varNameLen)) - - # print(" Current offset : {0}".format(varStartOffset + pos)) - # namelimit = limit - (pos - varStartPosition) - # status, varPath, varPathLen, pos = ReadEncodedStringFromBuffer( - # buf, pos, "Var Path", namelimit) - # if not status: - # return False, pos - # print(" Var Path : '" + varPath + - # "' ({0} bytes)".format(varPathLen)) - - # 1 byte ORDER (K, C, F) - order = buf[pos] # this is an integer value - pos = pos + 1 - if order != ord('K') and order != ord('C') and order != ord('F'): - print( - "ERROR: Next byte for Order must be 'K', 'C', or 'F' " - "but it isn't = {0} (={1})".format( - chr(order), order)) + if mdpos < currentpos: + print(f"ERROR: step {step} metadata pos {mdpos} points before the " + f"expected position in file {currentpos}") return False - print(" Order : " + chr(order)) - - # 1 byte UNUSED - unused = buf[pos] # this is an integer value - pos = pos + 1 - print(" Unused byte : {0}".format(unused)) - - # 1 byte TYPE - typeID = buf[pos] - pos = pos + 1 - print(" Type : {0} ({1}) ".format( - GetTypeName(typeID), typeID)) - - # 8 byte Number of Characteristics Sets - cSets = np.frombuffer(buf, dtype=np.uint64, count=1, offset=pos)[0] - pos = pos + 8 - print(" # of blocks : {0}".format(cSets)) - -# This loop only reads the number of reported blocks -# for i in range(cSets): -# # one characteristics block -# newlimit = limit - (pos - varStartPosition) -# fileOffset = varStartOffset + (pos - varStartPosition) -# status, pos = ReadCharacteristicsFromMetaData( -# buf, i, pos, newlimit, typeID, fileOffset, True) -# if not status: -# return False - -# This loop reads blocks until the reported length of variable index length - i = 0 - while pos < varStartPosition + varLength: - # one characteristics block - newlimit = limit - (pos - varStartPosition) - fileOffset = varStartOffset + (pos - varStartPosition) - status, pos = ReadCharacteristicsFromMetaData( - buf, i, pos, newlimit, typeID, fileOffset, True) - if not status: - return False - i = i + 1 - - if (i != cSets): - print( - "ERROR: reported # of blocks (={0}) != # of encoded blocks " - " (={1})".format( - cSets, i)) - - return True, pos - -def ReadAttrMD(buf, idx, pos, limit, attrStartOffset): - # Read one ATTR index group - attrStartPosition = pos - print(" Attr {0}: ".format(idx)) - print(" Starting offset : {0}".format(attrStartOffset)) + f.seek(mdpos) + buf = f.read(mdsize) + pos = 0 - # 4 bytes ATTR Index Length - attrLength = np.frombuffer(buf, dtype=np.uint32, count=1, offset=pos)[0] - pos = pos + 4 - print(" Attr idx length : {0} bytes (+4 for idx length)".format( - attrLength)) - if attrStartPosition + attrLength + 4 > limit: - print("ERROR: There is not enough bytes in Attr index block " - "to read this single Attr index") - return False, pos - - memberID = np.frombuffer(buf, dtype=np.uint32, count=1, offset=pos)[0] - pos = pos + 4 - print(" MemberID : {0}".format(memberID)) - - namelimit = limit - (pos - attrStartPosition) - status, grpName, grpNameLen, pos = ReadEncodedStringFromBuffer( - buf, pos, "Group Name", namelimit) - if not status: - return False, pos - print(" Group Name : '" + grpName + - "' ({0} bytes)".format(grpNameLen)) - - namelimit = limit - (pos - attrStartPosition) - status, attrName, attrNameLen, pos = ReadEncodedStringFromBuffer( - buf, pos, "Attr Name", namelimit) - if not status: - return False, pos - print(" Attr Name : '" + attrName + - "' ({0} bytes)".format(attrNameLen)) - - # print(" Current offset : {0}".format(attrStartOffset + pos)) - namelimit = limit - (pos - attrStartPosition) - status, attrPath, attrPathLen, pos = ReadEncodedStringFromBuffer( - buf, pos, "Attr Path", namelimit) - if not status: - return False, pos - print(" Attr Path : '" + attrPath + - "' ({0} bytes)".format(attrPathLen)) - - # 1 byte TYPE - typeID = buf[pos] - pos = pos + 1 - print(" Type : {0} ({1}) ".format( - GetTypeName(typeID), typeID)) - - # 8 byte Number of Characteristics Sets - cSets = np.frombuffer(buf, dtype=np.uint64, count=1, offset=pos)[0] - pos = pos + 8 - print(" # of blocks : {0}".format(cSets)) - - for i in range(cSets): - # one characteristics block - newlimit = limit - (pos - attrStartPosition) - fileOffset = attrStartOffset + (pos - attrStartPosition) - status, pos = ReadCharacteristicsFromMetaData( - buf, i, pos, newlimit, typeID, fileOffset, False) - if not status: - return False - - return True, pos - - -def ReadMetadataStep(f, fileSize, step, WriterCount): - # Read metadata of one step - mdStartPosition = f.tell() if step > 0: print("========================================================") - print("Step {0}: ".format(step)) - print(" PG Index offset : {0}".format(mdStartPosition)) - - # Read the PG Index - - # 8 bytes PG Count + Index Length - totalsize = np.fromfile(f, dtype=np.uint64, count=1) - print(" TotalMetadata size : {0}".format(totalsize)) - metadatasizearray = np.fromfile(f, dtype=np.uint64, count=WriterCount) - attrsizearray = np.fromfile(f, dtype=np.uint64, count=WriterCount) + print(f"Step {step}: ") + print(f" Offset = {mdpos}") - for i in range(0, WriterCount): - print(" Writer " + str(i) + ": MDsize=" + str(metadatasizearray[i]) + - ", AttrSize=" + str(attrsizearray)) - f.read(metadatasizearray[i]) - f.read(attrsizearray[i]) + mdsize_in_file = np.frombuffer(buf, dtype=np.uint64, count=1, + offset=pos) + pos = pos + 8 + if (mdsize == mdsize_in_file[0] + 8): + print(f" Size = {mdsize_in_file[0]}") + else: + print(f"ERROR: md record supposed to be {mdsize-8} + 8 bytes " + f"(as recorded in index), but found in file " + f"{mdsize_in_file[0]}") + + MDPosition = mdpos + 2 * 8 * WriterCount + print(" Variable metadata entries: ") + for w in range(0, WriterCount): + a = np.frombuffer(buf, dtype=np.uint64, count=1, offset=pos) + thisMDSize = int(a[0]) + pos = pos + 8 + print(f" Writer {w}: md size {thisMDSize} " + f"offset {MDPosition}") + MDPosition = MDPosition + thisMDSize + + print(" Attribute metadata entries: ") + for w in range(0, WriterCount): + a = np.frombuffer(buf, dtype=np.uint64, count=1, offset=pos) + thisMDSize = int(a[0]) + pos = pos + 8 + print(f" Writer {w}: md size {thisMDSize} " + f"offset {MDPosition}") + MDPosition = MDPosition + thisMDSize + + if (mdsize_in_file != MDPosition - mdpos): + print(f"ERROR: entries supposed to end at start offset+size " + f"{mdpos}+{mdsize_in_file[0]}, but it ends instead on offset " + f"{MDPosition}") return True -def DumpMetaData(fileName): +def DumpMetaData(fileName, MetadataIndexTable, WriterMap): print("========================================================") print(" Metadata File: " + fileName) print("========================================================") + + # print(f"MetadataIndexTable={MetadataIndexTable}") + # print(f"WriterMap={WriterMap}") + with open(fileName, "rb") as f: fileSize = fstat(f.fileno()).st_size - status = ReadHeader(f, fileSize, "Metadata") - if isinstance(status, list): - WriterCount = status[1] - status = status[0] - step = 0 - while (f.tell() < fileSize - 12 and status): - status = ReadMetadataStep(f, fileSize, step, WriterCount) - step = step + 1 + for MetadataEntry in MetadataIndexTable: + WriterMapEntry = WriterMap[MetadataEntry['writermapindex']] + status = ReadMetadataStep( + f, fileSize, MetadataEntry, WriterMapEntry) return status diff --git a/source/utils/bp5dbg/adios2/bp5dbg/metametadata.py b/source/utils/bp5dbg/adios2/bp5dbg/metametadata.py new file mode 100644 index 0000000000..54bbc8c081 --- /dev/null +++ b/source/utils/bp5dbg/adios2/bp5dbg/metametadata.py @@ -0,0 +1,52 @@ +from os import fstat + +import numpy as np + +from .utils import * + + +def ReadMetaMetadataRecord(buf, rec, pos, fileSize): + # Read one metametadata record + startoffset = str(pos).rjust(8) + # 8 bytes MetaMetaIDLen + MetaMetaInfoLen Length + mmIDlen = np.frombuffer(buf, dtype=np.uint64, count=1, offset=pos) + pos = pos + 8 + mmInfolen = np.frombuffer(buf, dtype=np.uint64, count=1, offset=pos) + pos = pos + 8 + # mmid = np.frombuffer(buf, dtype=np.uint8, count=mmIDlen[0], offset=pos) + pos = pos + int(mmIDlen[0]) + # mminfo = np.frombuffer(buf, dtype=np.uint8, count=mmInfolen[0], offset=pos) + pos = pos + int(mmInfolen[0]) + + recs = str(rec).rjust(7) + idlen = str(mmIDlen[0]).rjust(10) + infolen = str(mmInfolen[0]).rjust(12) + + print( + f" | {recs} | {startoffset} | {idlen} | {infolen} |") + + return pos + + +def DumpMetaMetaData(fileName): + print("========================================================") + print(" MetaMetadata File: " + fileName) + print("========================================================") + with open(fileName, "rb") as f: + fileSize = fstat(f.fileno()).st_size + print(f" File size = {fileSize}") + buf = f.read(fileSize) + print(" --------------------------------------------------") + print(" | Record | Offset | ID length | Info length |") + print(" --------------------------------------------------") + pos = 0 + rec = 0 + while (pos < fileSize - 1): + pos = ReadMetaMetadataRecord(buf, rec, pos, fileSize) + rec = rec + 1 + print(" --------------------------------------------------") + return True + + +if __name__ == "__main__": + print("ERROR: Utility main program is bp5dbg.py") diff --git a/source/utils/bp5dbg/adios2/bp5dbg/utils.py b/source/utils/bp5dbg/adios2/bp5dbg/utils.py index 22dbe45e6b..87ca3724cd 100644 --- a/source/utils/bp5dbg/adios2/bp5dbg/utils.py +++ b/source/utils/bp5dbg/adios2/bp5dbg/utils.py @@ -103,7 +103,7 @@ def GetCharacteristicDataLength(cID, typeID): # Read Header info 64 bytes # fileType: Data, Metadata, Index Table -def ReadHeader(f, fileSize, fileType): +def ReadHeader(f, fileSize, fileType, verbose): status = True if fileSize < 64: print("ERROR: Invalid " + fileType + ". File is smaller " @@ -143,6 +143,9 @@ def ReadHeader(f, fileSize, fileType): clmnStr = ' yes' # 45..63 unused + if not verbose: + return status + print("---------------------------------------------------------" "---------------------------------------------------------") print("| Version string |Major|Minor|Patch" diff --git a/source/utils/bp5dbg/bp5dbg.py b/source/utils/bp5dbg/bp5dbg.py index 5b797dbac0..9ec21342ba 100755 --- a/source/utils/bp5dbg/bp5dbg.py +++ b/source/utils/bp5dbg/bp5dbg.py @@ -1,11 +1,14 @@ #!/usr/bin/env python3 import argparse -from os.path import basename, exists, isdir import glob -from adios2.bp5dbg import * +from os.path import basename, exists, isdir + +from adios2.bp5dbg import DumpIndexTable, DumpMetaData, DumpMetaMetaData -WriterCount = -1 +MetadataIndexTable = [] +WriterMap = [] +status = True def SetupArgs(): @@ -21,7 +24,11 @@ def SetupArgs(): help="Do not print index table md.idx", action="store_true") parser.add_argument("--no-metadata", "-m", - help="Do not print metadata md.0", action="store_true") + help="Do not print metadata md.0", + action="store_true") + parser.add_argument("--no-metametadata", "-M", + help="Do not print meta-metadata mmd.0", + action="store_true") parser.add_argument("--no-data", "-d", help="Do not print data data.*", action="store_true") args = parser.parse_args() @@ -29,6 +36,8 @@ def SetupArgs(): # default values args.idxFileName = "" args.dumpIdx = False + args.metametadataFileName = "" + args.dumpMetaMetadata = False args.metadataFileName = "" args.dumpMetadata = False args.dataFileName = "" @@ -49,6 +58,9 @@ def CheckFileName(args): if not args.no_metadata: args.metadataFileName = args.FILE + "/" + "md.[0-9]*" args.dumpMetadata = True + if not args.no_metametadata: + args.metametadataFileName = args.FILE + "/" + "mmd.[0-9]*" + args.dumpMetaMetadata = True if not args.no_data: args.dataFileName = args.FILE + "/" + "data.[0-9]*" args.dumpData = True @@ -67,22 +79,62 @@ def CheckFileName(args): args.metadataFileName = args.FILE args.dumpMetadata = True + elif name.startswith("mmd."): + args.metametadataFileName = args.FILE + args.dumpMetaMetadata = True + def DumpIndexTableFile(args): + global MetadataIndexTable + global WriterMap + global status indexFileList = glob.glob(args.idxFileName) if len(indexFileList) > 0: - DumpIndexTable(indexFileList[0]) + status, MetadataIndexTable, WriterMap = DumpIndexTable( + indexFileList[0], True) else: print("There is no BP% Index Table file as " + args.idxFileName) + status = False + return status -# def DumpMetadataFiles(args): -# mdFileList = glob.glob(args.metadataFileName) -# if len(mdFileList) > 0: -# for fname in mdFileList: -# DumpMetaData(fname) -# else: -# print("There are no BP% Metadata files in " + args.metadataFileName) +def DumpMetaMetadataFiles(args): + global status + mdFileList = glob.glob(args.metametadataFileName) + if len(mdFileList) > 0: + for fname in mdFileList: + status = DumpMetaMetaData(fname) + else: + print("There are no BP% MetaMetadata files in " + + args.metametadataFileName) + status = False + return status + + +# xxx/md.X to xxx/md.idx +def GetIndexFileName(MDFileName): + return MDFileName.rsplit('.', 1)[0] + ".idx" + + +def DumpMetadataFiles(args): + global MetadataIndexTable + global WriterMap + global status + mdFileList = glob.glob(args.metadataFileName) + if len(mdFileList) > 0: + if len(MetadataIndexTable) == 0: + # need to parse index first + IndexFileName = GetIndexFileName(mdFileList[0]) + status, MetadataIndexTable, WriterMap = DumpIndexTable( + IndexFileName, False) + + if status: + for fname in mdFileList: + DumpMetaData(fname, MetadataIndexTable, WriterMap) + else: + print("There are no BP% Metadata files in " + args.metadataFileName) + status = False + return status # def DumpDataFiles(args): # dataFileList = glob.glob(args.dataFileName) @@ -93,8 +145,6 @@ def DumpIndexTableFile(args): # print("There are no BP5 Data files in " + args.dataFileName) -WriterCount = -1 - if __name__ == "__main__": args = SetupArgs() @@ -102,10 +152,13 @@ def DumpIndexTableFile(args): # print(args) if args.dumpIdx: - DumpIndexTableFile(args) + status = DumpIndexTableFile(args) + + if args.dumpMetaMetadata and status: + status = DumpMetaMetadataFiles(args) -# if args.dumpMetadata: -# DumpMetadataFiles(args) + if args.dumpMetadata and status: + status = DumpMetadataFiles(args) # if args.dumpData: # DumpDataFiles(args) From 96376939a2f807125dc9fab8e00986f944977550 Mon Sep 17 00:00:00 2001 From: Norbert Podhorszki Date: Tue, 15 Aug 2023 15:14:45 -0400 Subject: [PATCH 086/183] format --- source/utils/bp5dbg/adios2/bp5dbg/__init__.py | 1 - source/utils/bp5dbg/adios2/bp5dbg/data.py | 635 ------------------ source/utils/bp5dbg/adios2/bp5dbg/idxtable.py | 9 +- source/utils/bp5dbg/adios2/bp5dbg/metadata.py | 4 +- .../bp5dbg/adios2/bp5dbg/metametadata.py | 5 +- 5 files changed, 7 insertions(+), 647 deletions(-) delete mode 100644 source/utils/bp5dbg/adios2/bp5dbg/data.py diff --git a/source/utils/bp5dbg/adios2/bp5dbg/__init__.py b/source/utils/bp5dbg/adios2/bp5dbg/__init__.py index d9103f9a37..e14ae7d29f 100644 --- a/source/utils/bp5dbg/adios2/bp5dbg/__init__.py +++ b/source/utils/bp5dbg/adios2/bp5dbg/__init__.py @@ -1,4 +1,3 @@ -from .data import * from .idxtable import * from .metadata import * from .metametadata import * diff --git a/source/utils/bp5dbg/adios2/bp5dbg/data.py b/source/utils/bp5dbg/adios2/bp5dbg/data.py deleted file mode 100644 index 6b77fbd865..0000000000 --- a/source/utils/bp5dbg/adios2/bp5dbg/data.py +++ /dev/null @@ -1,635 +0,0 @@ -import numpy as np -from os import fstat -from .utils import * - - -def ReadEncodedString(f, ID, limit, lensize=2): - if lensize == 2: - # 2 bytes length + string without \0 - namelen = np.fromfile(f, dtype=np.uint16, count=1)[0] - elif lensize == 4: - # 2 bytes length + string without \0 - namelen = np.fromfile(f, dtype=np.uint32, count=1)[0] - else: - print("CODING ERROR: bp5dbp_data.ReadEncodedString: " - "lensize must be 2 or 4") - return False, "" - if namelen > limit: - print("ERROR: " + ID + " string length ({0}) is longer than the " - "limit to stay inside the block ({1})".format( - namelen, limit)) - return False, "" - name = f.read(namelen).decode('ascii') - return True, name - - -def ReadEncodedStringArray(f, ID, limit, nStrings): - s = [] - for i in range(nStrings): - # 2 bytes length + string - # !!! String here INCLUDES Terminating \0 !!! - namelen = np.fromfile(f, dtype=np.uint32, count=1)[0] - if namelen > limit - 4: - print("ERROR: " + ID + " string length ({0}) is longer than the " - "limit to stay inside the block ({1})".format( - namelen, limit - 4)) - return False, s - name = f.read(namelen).decode('ascii') - limit = limit - namelen - 4 - s.append(name[0:-1]) # omit the terminating \0 - return True, s - - -def readDataToNumpyArray(f, typeName, nElements): - if typeName == 'byte': - return np.fromfile(f, dtype=np.int8, count=nElements) - elif typeName == 'char': - return np.fromfile(f, dtype=np.uint8, count=nElements) - elif typeName == 'short': - return np.fromfile(f, dtype=np.int16, count=nElements) - elif typeName == 'integer': - return np.fromfile(f, dtype=np.int32, count=nElements) - elif typeName == 'long': - return np.fromfile(f, dtype=np.int64, count=nElements) - - elif typeName == 'unsigned_byte': - return np.fromfile(f, dtype=np.uint8, count=nElements) - elif typeName == 'unsigned_short': - return np.fromfile(f, dtype=np.uint16, count=nElements) - elif typeName == 'unsigned_integer': - return np.fromfile(f, dtype=np.uint32, count=nElements) - elif typeName == 'unsigned_long': - return np.fromfile(f, dtype=np.uint64, count=nElements) - - elif typeName == 'real': - return np.fromfile(f, dtype=np.float32, count=nElements) - elif typeName == 'double': - return np.fromfile(f, dtype=np.float64, count=nElements) - elif typeName == 'long_double': - return np.fromfile(f, dtype=np.float128, count=nElements) - - elif typeName == 'complex': - return np.fromfile(f, dtype=np.complex64, count=nElements) - elif typeName == 'double_complex': - return np.fromfile(f, dtype=np.complex128, count=nElements) - - else: - return np.zeros(1, dtype=np.uint32) - - -def ReadCharacteristicsFromData(f, limit, typeID, ndim): - cStartPosition = f.tell() - dataTypeName = GetTypeName(typeID) - # 1 byte NCharacteristics - nCharacteristics = np.fromfile(f, dtype=np.uint8, count=1)[0] - print(" # of Characteristics : {0}".format(nCharacteristics)) - # 4 bytes length - charLen = np.fromfile(f, dtype=np.uint32, count=1)[0] - print(" Characteristics Length : {0}".format(charLen)) - - for i in range(nCharacteristics): - print(" Characteristics[{0}]".format(i)) - # 1 byte TYPE - cID = np.fromfile(f, dtype=np.uint8, count=1)[0] - cName = GetCharacteristicName(cID) - print(" Type : {0} ({1}) ".format(cName, cID)) - if cName == 'value' or cName == 'min' or cName == 'max': - if dataTypeName == 'string': - namelimit = limit - (f.tell() - cStartPosition) - status, s = ReadEncodedString(f, "String Value", namelimit) - if not status: - return False - print(" Value : '" + s + "'") - else: - data = readDataToNumpyArray(f, dataTypeName, 1) - print(" Value : {0}".format(data[0])) - elif cName == 'offset' or cName == 'payload_offset': - data = readDataToNumpyArray(f, 'unsigned_long', 1) - print(" Value : {0}".format(data[0])) - elif cName == 'time_index' or cName == 'file_index': - data = readDataToNumpyArray(f, 'unsigned_integer', 1) - print(" Value : {0}".format(data[0])) - elif cName == 'minmax': - nBlocks = np.fromfile(f, - dtype=np.uint16, count=1)[0] - print(" nBlocks : {0}".format(nBlocks)) - bminmax = readDataToNumpyArray(f, dataTypeName, 2) - print(" Min/max : {0} / {1}".format( - bminmax[0], bminmax[1])) - if nBlocks > 1: - method = np.fromfile(f, dtype=np.uint8, - count=1)[0] - print(" Division method: {0}".format(method)) - blockSize = np.fromfile(f, dtype=np.uint64, - count=1)[0] - print(" Block size : {0}".format(blockSize)) - div = np.fromfile(f, dtype=np.uint16, - count=ndim) - print(" Division vector: (", end="") - for d in range(ndim): - print("{0}".format(div[d]), end="") - if d < ndim - 1: - print(", ", end="") - else: - print(")") - minmax = readDataToNumpyArray( - f, dataTypeName, 2 * nBlocks) - for i in range(nBlocks): - print(" Min/max : {0} / {1}".format( - minmax[2 * i], minmax[2 * i + 1])) - else: - print(" ERROR: could not understand this " - "characteristics type '{0}' id {1}".format(cName, cID)) - return True - -# Read String Variable data - - -def ReadStringVarData(f, expectedSize, - varsStartPosition): - # 2 bytes String Length - len = np.fromfile(f, dtype=np.uint16, count=1)[0] - if len != expectedSize - 2: - print("ERROR: Variable data block size does not equal the size " - "calculated from var block length") - print("Expected size = {0} calculated size " - "from encoded length info {1}". - format(expectedSize, len + 2)) - return False - - str = f.read(len).decode('ascii') - print(" Variable Data : '" + str + "'") - return True - -# Read Variable data - - -def ReadVarData(f, nElements, typeID, ldims, varLen, - varsStartPosition, varsTotalLength): - if typeID == 9: # string type - return ReadStringVarData(f, varLen, varsStartPosition) - typeSize = GetTypeSize(typeID) - if typeSize == 0: - print("ERROR: Cannot process variable data block with " - "unknown type size") - return False - - currentPosition = f.tell() - print(" Payload offset : {0}".format(currentPosition)) - - if currentPosition + varLen > varsStartPosition + varsTotalLength: - print("ERROR: Variable data block of size would reach beyond all " - "variable blocks") - print("VarsStartPosition = {0} varsTotalLength = {1}".format( - varsStartPosition, varsTotalLength)) - print("current Position = {0} var block length = {1}".format( - currentPosition, varLen)) - return False - - nBytes = int(varLen.item()) - - if nElements == 1: - # single value. read and print - value = readDataToNumpyArray(f, GetTypeName(typeID), - nElements) - print(" Payload (value) : {0} ({1} bytes)".format( - value[0], nBytes)) - else: - # seek instead of reading for now - # f.read(nBytes) - f.seek(nBytes, 1) - # data = readDataToNumpyArray(f, GetTypeName(typeID), - # nElements) - print(" Payload (array) : {0} bytes".format(nBytes)) - - return True - -# Read a variable's metadata - - -def ReadVMD(f, varidx, varsStartPosition, varsTotalLength): - startPosition = f.tell() - print(" Var {0:5d}".format(varidx)) - print(" Starting offset : {0}".format(startPosition)) - # 4 bytes TAG - tag = f.read(4) - if tag != b"[VMD": - print(" Tag: " + str(tag)) - print("ERROR: VAR group does not start with [VMD") - return False - print(" Tag : " + tag.decode('ascii')) - - # 8 bytes VMD Length - vmdlen = np.fromfile(f, dtype=np.uint64, count=1)[0] - print(" Var block size : {0} bytes (+4 for Tag)".format(vmdlen)) - expectedVarBlockLength = vmdlen + 4 # [VMD is not included in vmdlen - - if startPosition + expectedVarBlockLength > \ - varsStartPosition + varsTotalLength: - print("ERROR: There is not enough bytes inside this PG to read " - "this Var block") - print("VarsStartPosition = {0} varsTotalLength = {1}".format( - varsStartPosition, varsTotalLength)) - print("current var's start position = {0} var block length = {1}". - format(startPosition, expectedVarBlockLength)) - return False - - # 4 bytes VAR MEMBER ID - memberID = np.fromfile(f, dtype=np.uint32, count=1)[0] - print(" Member ID : {0}".format(memberID)) - - # VAR NAME, 2 bytes length + string without \0 - sizeLimit = expectedVarBlockLength - (f.tell() - startPosition) - status, varname = ReadEncodedString(f, "Var Name", sizeLimit) - if not status: - return False - print(" Var Name : " + varname) - - # VAR PATH, 2 bytes length + string without \0 - # sizeLimit = expectedVarBlockLength - (f.tell() - startPosition) - # status, varpath = ReadEncodedString(f, "Var Path", sizeLimit) - # if not status: - # return False - # print(" Var Path : " + varpath) - - # 1 byte ORDER (K, C, F) - order = f.read(1) - if (order != b'K' and order != b'C' and order != b'F' and order != b'\x00'): - print( - "ERROR: Next byte for Order must be 'K', 'C', or 'F' " - "but it isn't = {0}".format(order)) - return False - if (order == b'\x00'): - order = b'0' - print(" Order : " + order.decode('ascii')) - - # 1 byte UNUSED - unused = f.read(1) - print(" Unused byte : {0}".format(ord(unused))) - - # 1 byte TYPE - typeID = np.fromfile(f, dtype=np.uint8, count=1)[0] - print(" Type : {0} ({1}) ".format( - GetTypeName(typeID), typeID)) - - # ISDIMENSIONS 1 byte, 'y' or 'n' - isDimensionVar = f.read(1) - if (isDimensionVar != b'y' and isDimensionVar != b'n'): - print( - "ERROR: Next byte for isDimensionVar must be 'y' or 'n' " - "but it isn't = {0}".format(isDimensionVar)) - return False - print(" isDimensionVar : " + isDimensionVar.decode('ascii')) - - # 1 byte NDIMENSIONS - ndims = np.fromfile(f, dtype=np.uint8, count=1)[0] - print(" # of Dimensions : {0}".format( - ndims)) - - # DIMLENGTH - dimsLen = np.fromfile(f, dtype=np.uint16, count=1)[0] - print(" Dims Length : {0}".format( - dimsLen)) - - nElements = np.uint64(1) - ldims = np.zeros(ndims, dtype=np.uint64) - isLocalValueArray = False - for i in range(ndims): - print(" Dim[{0}]".format(i)) - # Read Local Dimensions (1 byte flag + 8 byte value) - # Is Dimension a variable ID 1 byte, 'y' or 'n' or '\0' - isDimensionVarID = f.read(1) - if isDimensionVarID != b'y' and isDimensionVarID != b'n' and \ - isDimensionVarID != b'\0': - print( - "ERROR: Next byte for isDimensionVarID must be 'y' or 'n' " - "but it isn't = {0}".format(isDimensionVarID)) - return False - if isDimensionVarID == b'\0': - isDimensionVarID = b'n' - ldims[i] = np.fromfile(f, dtype=np.uint64, count=1)[0] - print(" local dim : {0}".format(ldims[i])) - nElements = nElements * ldims[i] - # Read Global Dimensions (1 byte flag + 8 byte value) - # Is Dimension a variable ID 1 byte, 'y' or 'n' or '\0' - isDimensionVarID = f.read(1) - if isDimensionVarID != b'y' and isDimensionVarID != b'n' \ - and isDimensionVarID != b'\0': - print( - "ERROR: Next byte for isDimensionVarID must be 'y' or 'n' " - "but it isn't = {0}".format(isDimensionVarID)) - return False - if isDimensionVarID == b'\0': - isDimensionVarID = b'n' - gdim = np.fromfile(f, dtype=np.uint64, count=1)[0] - if i == 0 and ldims[i] == 0 and gdim == LocalValueDim: - print(" global dim : LocalValueDim ({0})".format(gdim)) - isLocalValueArray = True - else: - print(" global dim : {0}".format(gdim)) - - # Read Offset Dimensions (1 byte flag + 8 byte value) - # Is Dimension a variable ID 1 byte, 'y' or 'n' or '\0' - isDimensionVarID = f.read(1) - if isDimensionVarID != b'y' and isDimensionVarID != b'n' and \ - isDimensionVarID != b'\0': - print( - "ERROR: Next byte for isDimensionVarID must be 'y' or 'n' " - "but it isn't = {0}".format(isDimensionVarID)) - return False - if isDimensionVarID == b'\0': - isDimensionVarID = b'n' - offset = np.fromfile(f, dtype=np.uint64, count=1)[0] - print(" offset dim : {0}".format(offset)) - - sizeLimit = expectedVarBlockLength - (f.tell() - startPosition) - status = ReadCharacteristicsFromData(f, sizeLimit, typeID, ndims) - if not status: - return False - - # Padded end TAG - # 1 byte length of tag - endTagLen = np.fromfile(f, dtype=np.uint8, count=1)[0] - tag = f.read(endTagLen) - if not tag.endswith(b"VMD]"): - print(" Tag: " + str(tag)) - print("ERROR: VAR group metadata does not end with VMD]") - return False - print(" Tag (pad {0:2d}) : {1}".format( - endTagLen - 4, tag.decode('ascii'))) - - # special case: LocalValueDim: local values turned into 1D global array - # but it seems there is no data block at all for these variables - if isLocalValueArray: - ldims[0] = 1 - nElements = np.uint64(1) - else: - expectedVarDataSize = expectedVarBlockLength - \ - (f.tell() - startPosition) - status = ReadVarData(f, nElements, typeID, ldims, expectedVarDataSize, - varsStartPosition, varsTotalLength) - if not status: - return False - - return True - -# Read an attribute's metadata and value - - -def ReadAMD(f, attridx, attrsStartPosition, attrsTotalLength): - startPosition = f.tell() - print(" attr {0:5d}".format(attridx)) - print(" Starting offset : {0}".format(startPosition)) - # 4 bytes TAG - tag = f.read(4) - if tag != b"[AMD": - print(" Tag: " + str(tag)) - print("ERROR: ATTR group does not start with [AMD") - return False - print(" Tag : " + tag.decode('ascii')) - - # 8 bytes AMD Length - amdlen = np.fromfile(f, dtype=np.uint32, count=1)[0] - print(" Attr block size : {0} bytes (+4 for Tag)".format(amdlen)) - expectedAttrBlockLength = amdlen + 4 # [AMD is not included in amdlen - if startPosition + expectedAttrBlockLength > \ - attrsStartPosition + attrsTotalLength: - print("ERROR: There is not enough bytes inside this PG " - "to read this Attr block") - print("AttrsStartPosition = {0} attrsTotalLength = {1}".format( - attrsStartPosition, attrsTotalLength)) - print("current attr's start position = {0} " - "attr block length = {1}".format( - startPosition, expectedAttrBlockLength)) - return False - - # 4 bytes ATTR MEMBER ID - memberID = np.fromfile(f, dtype=np.uint32, count=1)[0] - print(" Member ID : {0}".format(memberID)) - - # ATTR NAME, 2 bytes length + string without \0 - sizeLimit = expectedAttrBlockLength - (f.tell() - startPosition) - status, attrname = ReadEncodedString(f, "Attr Name", sizeLimit) - if not status: - return False - print(" Attr Name : " + attrname) - - # ATTR PATH, 2 bytes length + string without \0 - sizeLimit = expectedAttrBlockLength - (f.tell() - startPosition) - status, attrpath = ReadEncodedString(f, "Attr Path", sizeLimit) - if not status: - return False - print(" Attr Path : " + attrpath) - - # isAttrAVar 1 byte, 'y' or 'n' - isAttrAVar = f.read(1) - if isAttrAVar != b'y' and isAttrAVar != b'n': - print( - "ERROR: Next byte for isAttrAVar must be 'y' or 'n' " - "but it isn't = {0}".format(isAttrAVar)) - return False - print(" Refers to Var? : " + isAttrAVar.decode('ascii')) - - # 1 byte TYPE - typeID = np.fromfile(f, dtype=np.uint8, count=1)[0] - typeName = GetTypeName(typeID) - print(" Type : {0} ({1}) ".format(typeName, typeID)) - - # Read Attribute data - if typeName == 'string': - sizeLimit = expectedAttrBlockLength - (f.tell() - startPosition) - status, s = ReadEncodedString( - f, "Attribute String Value", sizeLimit, 4) - if not status: - return False - print(" Value : '" + s + "'") - - elif typeName == 'string_array': - nElems = np.fromfile(f, dtype=np.uint32, count=1)[0] - sizeLimit = expectedAttrBlockLength - (f.tell() - startPosition) - status, strList = ReadEncodedStringArray( - f, "Attribute String Array", sizeLimit, nElems) - if not status: - return False - print(" Value : [", end="") - for j in range(len(strList)): - print("'" + strList[j] + "'", end="") - if j < len(strList) - 1: - print(", ", end="") - print("]") - else: - nBytes = np.fromfile(f, dtype=np.uint32, count=1)[0] - typeSize = GetTypeSize(typeID) - nElems = int(nBytes / typeSize) - data = readDataToNumpyArray(f, typeName, nElems) - print(" Value : [", end="") - for j in range(nElems): - print("{0}".format(data[j]), end="") - if j < nElems - 1: - print(", ", end="") - print("]") - - # End TAG AMD] - tag = f.read(4) - if tag != b"AMD]": - print(" Tag: " + str(tag)) - print("ERROR: PG group metadata does not end with AMD]") - return False - print(" Tag : {0}".format(tag.decode('ascii'))) - - return True - -# Read one PG process group (variables and attributes from one process in -# one step) - - -def ReadPG(f, fileSize, pgidx): - pgStartPosition = f.tell() - if pgidx > 0: - print("========================================================") - print("Process Group {0}: ".format(pgidx)) - print(" Starting offset : {0}".format(pgStartPosition)) - tag = f.read(4) - if tag != b"[PGI": - print(" Tag: " + str(tag)) - print("ERROR: PG group does not start with [PGI") - return False - - print(" Tag : " + tag.decode('ascii')) - - # 8 bytes PG Length - pglen = np.fromfile(f, dtype=np.uint64, count=1)[0] - print(" PG length : {0} bytes (+4 for Tag)".format(pglen)) - # pglen does not include the opening tag 4 bytes: - expectedPGLength = pglen + 4 - if pgStartPosition + expectedPGLength > fileSize: - print("ERROR: There is not enough bytes in file to read this PG") - return False - - # ColumnMajor (host language Fortran) 1 byte, 'y' or 'n' - isColumnMajor = f.read(1) - if isColumnMajor != b'y' and isColumnMajor != b'n': - print( - "ERROR: Next byte for isColumnMajor must be 'y' or 'n' " - "but it isn't = {0}".format(isColumnMajor)) - return False - print(" isColumnMajor : " + isColumnMajor.decode('ascii')) - - # PG Name, 2 bytes length + string without \0 - sizeLimit = expectedPGLength - (f.tell() - pgStartPosition) - status, pgname = ReadEncodedString(f, "PG Name", sizeLimit) - if not status: - return False - print(" PG Name : " + pgname) - - # 4 bytes unused (for Coordination variable) - tag = f.read(4) - print(" Unused 4 bytes : " + str(tag)) - - # Timestep name - sizeLimit = expectedPGLength - (f.tell() - pgStartPosition) - status, tsname = ReadEncodedString(f, "Timestep Name", sizeLimit) - if not status: - return False - print(" Step Name : " + tsname) - - # STEP 4 bytes - step = np.fromfile(f, dtype=np.uint32, count=1)[0] - print(" Step Value : {0}".format(step)) - - # Method Count 1 byte1 - nMethods = np.fromfile(f, dtype=np.uint8, count=1)[0] - print(" Methods count : {0}".format(nMethods)) - - # Method Length 2 byte1 - lenMethods = np.fromfile(f, dtype=np.uint16, count=1)[0] - print(" Methods length : {0}".format(lenMethods)) - - print(" Methods info") - for i in range(nMethods): - # Method ID - methodID = np.fromfile(f, dtype=np.uint8, count=1)[0] - print(" Method ID : {0}".format(methodID)) - sizeLimit = expectedPGLength - (f.tell() - pgStartPosition) - status, methodParams = ReadEncodedString( - f, "Method Parameters", sizeLimit) - if not status: - return False - print(' M. params : "' + methodParams + '"') - - # VARIABLES - - # VARS COUNT 4 bytes - nVars = np.fromfile(f, dtype=np.uint32, count=1)[0] - print(" # of Variables : {0}".format(nVars)) - - # VARS SIZE 8 bytes - varlen = np.fromfile(f, dtype=np.uint64, count=1)[0] - print(" Vars length : {0} bytes".format(varlen)) - sizeLimit = expectedPGLength - (f.tell() - pgStartPosition) - expectedVarsLength = varlen # need to read this more - if expectedVarsLength > sizeLimit: - print("ERROR: There is not enough bytes in PG to read the variables") - return False - - varsStartPosition = f.tell() - for i in range(nVars): - # VMD block - status = ReadVMD(f, i, varsStartPosition, expectedVarsLength) - if not status: - return False - - # ATTRIBUTES - - # ATTRS COUNT 4 bytes - nAttrs = np.fromfile(f, dtype=np.uint32, count=1)[0] - print(" # of Attributes : {0}".format(nAttrs)) - - attrsStartPosition = f.tell() - # ATTS SIZE 8 bytes - # attlen includes the 8 bytes of itself, so remember position before this - attlen = np.fromfile(f, dtype=np.uint64, count=1)[0] - print(" Attrs length : {0} bytes".format(attlen)) - sizeLimit = expectedPGLength - (attrsStartPosition - pgStartPosition) - 4 - expectedAttrsLength = attlen # need to read this more before reaching PGI] - - if expectedAttrsLength > sizeLimit: - print("ERROR: There is not enough bytes in PG to read the attributes") - return False - - attrsStartPosition = f.tell() - for i in range(nAttrs): - # AMD block - status = ReadAMD(f, i, attrsStartPosition, expectedAttrsLength) - if not status: - return False - - # End TAG PGI] - tag = f.read(4) - if tag != b"PGI]": - print(" Tag: " + str(tag)) - print("ERROR: PG group metadata does not end with PGI]") - return False - print(" Tag : {0}".format(tag.decode('ascii'))) - - return True - - -def DumpData(fileName): - print("========================================================") - print(" Data File: " + fileName) - print("========================================================") - with open(fileName, "rb") as f: - fileSize = fstat(f.fileno()).st_size - status = ReadHeader(f, fileSize, "Data") - if not status: - return status - pgidx = 0 - while (f.tell() < fileSize - 12 and status): - status = ReadPG(f, fileSize, pgidx) - pgidx = pgidx + 1 - return status - - -if __name__ == "__main__": - print("ERROR: Utility main program is bp5dbg.py") diff --git a/source/utils/bp5dbg/adios2/bp5dbg/idxtable.py b/source/utils/bp5dbg/adios2/bp5dbg/idxtable.py index d6eee886de..d554096428 100644 --- a/source/utils/bp5dbg/adios2/bp5dbg/idxtable.py +++ b/source/utils/bp5dbg/adios2/bp5dbg/idxtable.py @@ -1,9 +1,8 @@ -from ast import Sub from os import fstat import numpy as np -from .utils import * +from .utils import ReadHeader # metadata index table (list of dictionary) # step: step (superfluous, since list idx = step) @@ -85,9 +84,9 @@ def ReadIndex(f, fileSize, verbose): MetadataIndexTable.append(md) if verbose: - print("| Step = " + stepstr + "| MetadataPos = " + mdatapos + - " | MetadataSize = " + mdatasize + " | FlushCount = " + - flushcount + "|") + print("| Step = " + stepstr + "| MetadataPos = " + + mdatapos + " | MetadataSize = " + mdatasize + + " | FlushCount = " + flushcount + "|") pos = pos + 3 * 8 diff --git a/source/utils/bp5dbg/adios2/bp5dbg/metadata.py b/source/utils/bp5dbg/adios2/bp5dbg/metadata.py index ad8be5ced0..6fce9ec786 100644 --- a/source/utils/bp5dbg/adios2/bp5dbg/metadata.py +++ b/source/utils/bp5dbg/adios2/bp5dbg/metadata.py @@ -2,15 +2,13 @@ import numpy as np -from .utils import * - def ReadMetadataStep(f, fileSize, MetadataEntry, WriterMapEntry): # Read metadata of one step step = MetadataEntry['step'] mdpos = MetadataEntry['mdpos'] mdsize = MetadataEntry['mdsize'] - flushcount = MetadataEntry['flushcount'] + # flushcount = MetadataEntry['flushcount'] WriterCount = WriterMapEntry['WriterCount'] if mdpos + mdsize > fileSize: diff --git a/source/utils/bp5dbg/adios2/bp5dbg/metametadata.py b/source/utils/bp5dbg/adios2/bp5dbg/metametadata.py index 54bbc8c081..3b908e29e2 100644 --- a/source/utils/bp5dbg/adios2/bp5dbg/metametadata.py +++ b/source/utils/bp5dbg/adios2/bp5dbg/metametadata.py @@ -2,8 +2,6 @@ import numpy as np -from .utils import * - def ReadMetaMetadataRecord(buf, rec, pos, fileSize): # Read one metametadata record @@ -15,7 +13,8 @@ def ReadMetaMetadataRecord(buf, rec, pos, fileSize): pos = pos + 8 # mmid = np.frombuffer(buf, dtype=np.uint8, count=mmIDlen[0], offset=pos) pos = pos + int(mmIDlen[0]) - # mminfo = np.frombuffer(buf, dtype=np.uint8, count=mmInfolen[0], offset=pos) + # mminfo = np.frombuffer(buf, dtype=np.uint8, + # count=mmInfolen[0], offset=pos) pos = pos + int(mmInfolen[0]) recs = str(rec).rjust(7) From 8092a9f7900d1993cd84d089a0e81499184f9919 Mon Sep 17 00:00:00 2001 From: Norbert Podhorszki Date: Tue, 15 Aug 2023 15:51:01 -0400 Subject: [PATCH 087/183] remove data.py since BP5 data file has no format --- source/utils/bp5dbg/CMakeLists.txt | 1 - 1 file changed, 1 deletion(-) diff --git a/source/utils/bp5dbg/CMakeLists.txt b/source/utils/bp5dbg/CMakeLists.txt index 83bdcdc0c6..df085bb65f 100644 --- a/source/utils/bp5dbg/CMakeLists.txt +++ b/source/utils/bp5dbg/CMakeLists.txt @@ -5,7 +5,6 @@ install(PROGRAMS bp5dbg.py install( FILES adios2/bp5dbg/__init__.py - adios2/bp5dbg/data.py adios2/bp5dbg/utils.py adios2/bp5dbg/metadata.py adios2/bp5dbg/metametadata.py From 64f5cdfbd89a092f35195c0e5ef080edfc092717 Mon Sep 17 00:00:00 2001 From: atl Upstream Date: Tue, 15 Aug 2023 20:43:30 -0400 Subject: [PATCH 088/183] atl 2023-08-15 (7286dd11) Code extracted from: https://github.com/GTkorvo/atl.git at commit 7286dd1124188c8105ebdcbc28b130eadf41dc49 (master). Upstream Shortlog ----------------- --- CMakeLists.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index aebbadb1a1..2741b4d18d 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required(VERSION 3.0) +cmake_minimum_required(VERSION 3.5) # The directory label is used for CDash to treat ATL as a subproject of GTKorvo set(CMAKE_DIRECTORY_LABELS ATL) From 9862544e7e59ea8bad114d62c2eca70c98769ffd Mon Sep 17 00:00:00 2001 From: dill Upstream Date: Tue, 15 Aug 2023 20:43:10 -0400 Subject: [PATCH 089/183] dill 2023-08-15 (235dadf0) Code extracted from: https://github.com/GTkorvo/dill.git at commit 235dadf0acaaed4b47ce3327cb5086cc05914a8d (master). Upstream Shortlog ----------------- --- CMakeLists.txt | 2 +- arm6.c | 66 +++++++++----------------------------------------- arm6_rt.c | 2 +- 3 files changed, 13 insertions(+), 57 deletions(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index bd86a32d99..b90f757087 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required(VERSION 3.0) +cmake_minimum_required(VERSION 3.5) # The directory label is used for CDash to treat DILL as a subproject of GTKorvo set(CMAKE_DIRECTORY_LABELS DILL) diff --git a/arm6.c b/arm6.c index da90507c66..dceff3a5be 100644 --- a/arm6.c +++ b/arm6.c @@ -171,13 +171,7 @@ int arm6_type_size[] = { sizeof(char*), /* EC */ }; -extern void arm6_dproc(s, op, shift_code, dest, src1, src2) -dill_stream s; -int op; -int shift_code; -int dest; -int src1; -int src2; +extern void arm6_dproc(dill_stream s, int op, int shift_code, int dest, int src1, int src2) { int shift = 0; if (shift_code != 0) { @@ -190,12 +184,7 @@ int src2; INSN_OUT(s, COND(AL)|CLASS(0x0)|OPCODE(op)|S(0)|RN(src1)|RD(dest)|RM(src2)|shift); } -extern void arm6_dproc2(s, op, fop, dest, src) -dill_stream s; -int op; -int fop; -int dest; -int src; +extern void arm6_dproc2(dill_stream s, int op, int fop, int dest, int src) { if (op == RSB) { arm6_dproci(s, RSB, 0, dest, src, 0); @@ -208,23 +197,12 @@ int src; } } -extern void arm6_negf(s, op,fd, dest, src) -dill_stream s; -int op; -int fd; -int dest; -int src; +extern void arm6_negf(dill_stream s, int op, int fd, int dest, int src) { arm6_fproc2(s, op, fd, 0, dest, src); } -extern void arm6_fproc2(s, op,fd, n, dest, src) -dill_stream s; -int op; -int fd; -int n; -int dest; -int src; +extern void arm6_fproc2(dill_stream s, int op, int fd, int n, int dest, int src) { INSN_OUT(s, COND(AL)|CLASS(0x7)|p(1)|D(dest&1)|q(1)|r(1)|FN(op)|N(n)|FD(dest>>1)|(0xa+fd)<<8|s(1)|M(src&1)|((src>>1)&0xf)); } @@ -348,24 +326,12 @@ arm6_movi2d(dill_stream s, int dest, int src) arm6_ploadi(s, DILL_D, 0, dest, _fp, ami->conversion_word); } -extern void arm6_fproc(s, arm6_op, fd, dest, src1, src2) -dill_stream s; -int arm6_op; -int fd; -int dest; -int src1; -int src2; +extern void arm6_fproc(dill_stream s, int arm6_op, int fd, int dest, int src1, int src2) { INSN_OUT(s, COND(AL)|CLASS(0x7)|D(dest&0x1)|p(arm6_op>>3)|q(arm6_op>>2)|r(arm6_op>>1)|s(arm6_op)|(arm6_op&0x1)<<15|((src1>>1)&0xf)<<16|((dest>>1)&0xf)<<12|(0xa+(fd))<<8|(src1&1)<<7|(src2>>1)&0xf|(src2&0x1)<<5); } -extern void arm6_dproci(s, op, shift_code, dest, src1, imm) -dill_stream s; -int op; -int shift_code; -int dest; -int src1; -long imm; +extern void arm6_dproci(dill_stream s, int op, int shift_code, int dest, int src1, long imm) { int shift = 0; int setcc = 0; @@ -1608,8 +1574,7 @@ arm6_emit_save(dill_stream s) } extern void -arm6_end(s) -dill_stream s; +arm6_end(dill_stream s) { arm6_nop(s); arm6_simple_ret(s); @@ -1622,8 +1587,7 @@ dill_stream s; } extern void -arm6_package_end(s) -dill_stream s; +arm6_package_end(dill_stream s) { arm6_nop(s); arm6_simple_ret(s); @@ -1633,10 +1597,7 @@ dill_stream s; } extern void * -arm6_clone_code(s, new_base, available_size) -dill_stream s; -void *new_base; -int available_size; +arm6_clone_code(dill_stream s, void *new_base, int available_size) { int size = dill_code_size(s); if (available_size < size) { @@ -1704,10 +1665,7 @@ arm6_setf(dill_stream s, int type, int junk, int dest, double imm) extern void -arm6_set(s, r, val) -dill_stream s; -int r; -long val; +arm6_set(dill_stream s, int r, long val) { #if defined(HOST_ARM7) /* movw */ @@ -1761,9 +1719,7 @@ arm6_reg_init(dill_stream s) } extern void* -gen_arm6_mach_info(s, v9) -dill_stream s; -int v9; +gen_arm6_mach_info(dill_stream s, int v9) { arm6_mach_info ami = malloc(sizeof(*ami)); if (s->p->mach_info != NULL) { diff --git a/arm6_rt.c b/arm6_rt.c index 6b7e908e25..63ad29f260 100644 --- a/arm6_rt.c +++ b/arm6_rt.c @@ -62,7 +62,7 @@ arm6_rt_set_PLT_locs(call_t* t, dill_pkg pkg) int i; int PLT_offset = pkg->code_size - 3 * 4; /* 3 insn per PLT entry */ for (i=t->call_count-1; i>=0; i--) { - t->call_locs[i].mach_info = (void*)PLT_offset; + t->call_locs[i].mach_info = (void*) (intptr_t)PLT_offset; PLT_offset -= 3 * 4; } } From 01972547f0a6b72a0200eba2c7d96a4db78afa01 Mon Sep 17 00:00:00 2001 From: EVPath Upstream Date: Tue, 15 Aug 2023 17:21:17 -0400 Subject: [PATCH 090/183] EVPath 2023-08-15 (657c7fa4) Code extracted from: https://github.com/GTkorvo/EVPath.git at commit 657c7fa4449d5b8378950555977606502f448d77 (master). Upstream Shortlog ----------------- --- CMakeLists.txt | 5 +++-- cm.c | 5 +++++ cm_evol.c | 1 + cm_pbio.c | 1 + cm_perf.c | 1 + cm_schedule.h | 1 + cm_transport.c | 4 ++++ cmenet.c | 1 + cmepoll.c | 1 + cmib.c | 1 + cmmulticast.c | 1 + cmselect.c | 14 +++++++------- cmsockets.c | 7 +++---- cmudp.c | 1 + dlloader.c | 10 +++++++++- ip_config.c | 1 + qual_hostname.c | 1 + tests/auto_test.c | 2 +- tests/block_test.c | 2 +- tests/bulktest.c | 2 +- tests/cmconn.c | 2 +- tests/cmping.c | 2 +- tests/congest_bulktest.c | 2 +- tests/congestion_test.c | 2 +- tests/evtest.c | 2 +- tests/extract_test.c | 2 +- tests/filter2_test.c | 2 +- tests/filter_test.c | 2 +- tests/http_test.c | 2 +- tests/multi_thread.c | 2 +- tests/multiq_test.c | 2 +- tests/no_type_router_test.c | 2 +- tests/rawtest.c | 2 +- tests/rawtest2.c | 2 +- tests/router_test.c | 2 +- tests/router_test2.c | 2 +- tests/split_test.c | 2 +- tests/store_limit_test.c | 2 +- tests/store_send_test.c | 2 +- tests/submit_test.c | 2 +- tests/take_test.c | 2 +- tests/thin_test.c | 2 +- tests/transform_test.c | 2 +- thin_server.c | 1 + 44 files changed, 69 insertions(+), 40 deletions(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index 532494d68e..003f31325f 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required(VERSION 3.2) +cmake_minimum_required(VERSION 3.5) # The directory label is used for CDash to treat EVPath as a subproject of # GTKorvo @@ -303,7 +303,8 @@ if(EVPATH_TRANSPORT_MODULES) foreach(M cmselect cmsockets cmudp cmmulticast) set_target_properties(${M} PROPERTIES OUTPUT_NAME ${EVPATH_LIBRARY_PREFIX}${M} - LIBRARY_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/${EVPATH_INSTALL_MODULE_DIR}) + LIBRARY_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/${EVPATH_INSTALL_MODULE_DIR} + WINDOWS_EXPORT_ALL_SYMBOLS TRUE) install(TARGETS ${M} DESTINATION ${EVPATH_INSTALL_MODULE_DIR} COMPONENT ${EVPATH_MODULE_COMPONENT_PREFIX}${M}) endforeach() diff --git a/cm.c b/cm.c index 9b1d5e45f1..e1bb4fdc9e 100644 --- a/cm.c +++ b/cm.c @@ -17,6 +17,7 @@ #include #include #ifdef HAVE_WINDOWS_H +#define FD_SETSIZE 1024 #include #define __ANSI_CPP__ #else @@ -3773,7 +3774,11 @@ CM_init_select(CMControlList cl, CManager cm) lt_dladdsearchdir(EVPATH_MODULE_BUILD_DIR); lt_dladdsearchdir(EVPATH_MODULE_INSTALL_DIR); libname = malloc(strlen("lib" CM_LIBRARY_PREFIX "cm") + strlen(select_module) + strlen(MODULE_EXT) + 1); +#ifndef HAVE_WINDOWS_H strcpy(libname, "lib" CM_LIBRARY_PREFIX "cm"); +#else + strcpy(libname, CM_LIBRARY_PREFIX "cm"); +#endif strcat(libname, select_module); strcat(libname, MODULE_EXT); handle = CMdlopen(cm->CMTrace_file, libname, 0); diff --git a/cm_evol.c b/cm_evol.c index bd661eac22..dc62cddc39 100644 --- a/cm_evol.c +++ b/cm_evol.c @@ -11,6 +11,7 @@ #endif #include #ifdef HAVE_WINDOWS_H +#define FD_SETSIZE 1024 #include #define __ANSI_CPP__ #else diff --git a/cm_pbio.c b/cm_pbio.c index 9e41a5d42b..84aedbc777 100644 --- a/cm_pbio.c +++ b/cm_pbio.c @@ -8,6 +8,7 @@ #endif #include #ifdef HAVE_WINDOWS_H +#define FD_SETSIZE 1024 #include #else #include diff --git a/cm_perf.c b/cm_perf.c index a1328f0c3c..30bce15e4b 100644 --- a/cm_perf.c +++ b/cm_perf.c @@ -12,6 +12,7 @@ #endif #include #ifdef HAVE_WINDOWS_H +#define FD_SETSIZE 1024 #include #define __ANSI_CPP__ #else diff --git a/cm_schedule.h b/cm_schedule.h index 32ed8bb54b..8b2132b373 100644 --- a/cm_schedule.h +++ b/cm_schedule.h @@ -8,6 +8,7 @@ extern "C" { #endif #ifdef _MSC_VER +#define FD_SETSIZE 1024 #include #endif typedef struct _avail_period { diff --git a/cm_transport.c b/cm_transport.c index 33e7883f2d..8d84cefe42 100644 --- a/cm_transport.c +++ b/cm_transport.c @@ -121,7 +121,11 @@ load_transport(CManager cm, const char *trans_name, int quiet) strlen(MODULE_EXT) + 1); +#ifndef HAVE_WINDOWS_H strcpy(libname, "lib" CM_LIBRARY_PREFIX "cm"); +#else + strcpy(libname, CM_LIBRARY_PREFIX "cm"); +#endif strcat(libname, trans_name); strcat(libname, MODULE_EXT); diff --git a/cmenet.c b/cmenet.c index 3e04e45134..eeac56f3e5 100644 --- a/cmenet.c +++ b/cmenet.c @@ -6,6 +6,7 @@ #undef NDEBUG #ifdef HAVE_WINDOWS_H +#define FD_SETSIZE 1024 #include #include #include diff --git a/cmepoll.c b/cmepoll.c index 57951c177d..b28fca2790 100644 --- a/cmepoll.c +++ b/cmepoll.c @@ -3,6 +3,7 @@ #include #ifdef HAVE_WINDOWS_H +#define FD_SETSIZE 1024 #include #include #include diff --git a/cmib.c b/cmib.c index 0100083b6d..6cfd7c828f 100644 --- a/cmib.c +++ b/cmib.c @@ -3,6 +3,7 @@ #include #ifdef HAVE_WINDOWS_H +#define FD_SETSIZE 1024 #include #include #define getpid() _getpid() diff --git a/cmmulticast.c b/cmmulticast.c index 82fdec1075..03acd641e7 100644 --- a/cmmulticast.c +++ b/cmmulticast.c @@ -3,6 +3,7 @@ #include #ifdef HAVE_WINDOWS_H +#define FD_SETSIZE 1024 #include #include #include diff --git a/cmselect.c b/cmselect.c index 36a6a6265a..baf9409df6 100644 --- a/cmselect.c +++ b/cmselect.c @@ -3,6 +3,7 @@ #include #ifdef HAVE_WINDOWS_H +#define FD_SETSIZE 1024 #include #include #include @@ -121,8 +122,8 @@ typedef struct select_data { int closed; CManager cm; int select_consistency_number; - int wake_read_fd; - int wake_write_fd; + SOCKET wake_read_fd; + SOCKET wake_write_fd; } *select_data_ptr; static void wake_server_thread(select_data_ptr socket_data); @@ -879,8 +880,7 @@ int err; */ int -pipe(filedes) -SOCKET filedes[2]; +pipe(SOCKET *filedes) { int length; @@ -970,7 +970,7 @@ SOCKET filedes[2]; static void setup_wake_mechanism(CMtrans_services svc, select_data_ptr *sdp) { - int filedes[2]; + SOCKET filedes[2]; select_data_ptr sd = *((select_data_ptr *)sdp); if (sd->cm) { @@ -978,7 +978,7 @@ setup_wake_mechanism(CMtrans_services svc, select_data_ptr *sdp) assert(CM_LOCKED(svc, sd->cm)); } if (sd->wake_read_fd != -1) return; - if (pipe(filedes) != 0) { + if (pipe(&filedes[0]) != 0) { perror("Pipe for wake not created. Wake mechanism inoperative."); return; } @@ -986,7 +986,7 @@ setup_wake_mechanism(CMtrans_services svc, select_data_ptr *sdp) sd->wake_write_fd = filedes[1]; svc->verbose(sd->cm, CMSelectVerbose, "CMSelect Adding read_wake_fd as action on fd %d", sd->wake_read_fd); - libcmselect_LTX_add_select(svc, sdp, sd->wake_read_fd, read_wake_fd, + libcmselect_LTX_add_select(svc, sdp, (int)sd->wake_read_fd, read_wake_fd, (void*)(intptr_t)sd->wake_read_fd, NULL); } diff --git a/cmsockets.c b/cmsockets.c index 26d83b88cd..a4bfb79688 100644 --- a/cmsockets.c +++ b/cmsockets.c @@ -3,6 +3,7 @@ #include #ifdef HAVE_WINDOWS_H +#define FD_SETSIZE 1024 #include #include #include @@ -782,7 +783,7 @@ libcmsockets_LTX_non_blocking_listen(CManager cm, CMtrans_services svc, transpor return NULL; } sd->listen_fds = realloc(sd->listen_fds, - sizeof(int)*(sd->listen_count+1)); + sizeof(SOCKET)*(sd->listen_count+1)); sd->listen_ports = realloc(sd->listen_ports, sizeof(int)*(sd->listen_count+1)); sd->listen_fds[sd->listen_count] = conn_sock; @@ -973,12 +974,10 @@ int iovcnt; { ssize_t wrote = 0; int i; - printf("tmp Writev iovcnt %d\n", iovcnt); for (i = 0; i < iovcnt; i++) { size_t left = iov[i].iov_len; ssize_t iget = 0; - printf("Writing block[%d] of len %zu, startig at %p\n", i, left, iov[i].iov_base); while (left > 0) { errno = 0; size_t this_write = left; @@ -1208,7 +1207,7 @@ libcmsockets_LTX_initialize(CManager cm, CMtrans_services svc, transport_entry t socket_data->svc = svc; socket_data->characteristics = create_attr_list(); socket_data->listen_count = 0; - socket_data->listen_fds = malloc(sizeof(int)); + socket_data->listen_fds = malloc(sizeof(SOCKET)); socket_data->listen_ports = malloc(sizeof(int)); add_int_attr(socket_data->characteristics, CM_TRANSPORT_RELIABLE, 1); svc->add_shutdown_task(cm, free_socket_data, (void *) socket_data, FREE_TASK); diff --git a/cmudp.c b/cmudp.c index bcde47ad61..d865034dde 100644 --- a/cmudp.c +++ b/cmudp.c @@ -3,6 +3,7 @@ #include #ifdef HAVE_WINDOWS_H +#define FD_SETSIZE 1024 #include #include #define getpid() _getpid() diff --git a/dlloader.c b/dlloader.c index e4c5ad3791..8cc58134d1 100644 --- a/dlloader.c +++ b/dlloader.c @@ -184,11 +184,19 @@ CMdlsym(void *vdlh, char *sym) return NULL; #else dlhandle dlh = (dlhandle)vdlh; - char *tmp = malloc(strlen(sym) + strlen(dlh->lib_prefix) + 1); + char *tmp = malloc(strlen(sym) + strlen(dlh->lib_prefix) + 3); void *sym_val; strcpy(tmp, dlh->lib_prefix); strcat(tmp, sym); sym_val = dlsym(dlh->dlopen_handle, tmp); + if (!sym_val) { + // try with lib prefix + char *tmp2 = malloc(strlen(tmp) + 4); + strcpy(tmp2, "lib"); + strcat(tmp2, tmp); + sym_val = dlsym(dlh->dlopen_handle, tmp2); + free(tmp2); + } free(tmp); if (!sym_val) sym_val = dlsym(dlh->dlopen_handle, sym); diff --git a/ip_config.c b/ip_config.c index f52f9e881d..e07b4ecd81 100644 --- a/ip_config.c +++ b/ip_config.c @@ -7,6 +7,7 @@ #include #endif #ifdef HAVE_WINDOWS_H +#define FD_SETSIZE 1024 #include #include #include diff --git a/qual_hostname.c b/qual_hostname.c index c917626e8c..eed0e028f1 100644 --- a/qual_hostname.c +++ b/qual_hostname.c @@ -7,6 +7,7 @@ #include #endif #ifdef HAVE_WINDOWS_H +#define FD_SETSIZE 1024 #include #define __ANSI_CPP__ #else diff --git a/tests/auto_test.c b/tests/auto_test.c index 492b9dcd02..aeba229bf0 100644 --- a/tests/auto_test.c +++ b/tests/auto_test.c @@ -273,7 +273,7 @@ do_regression_master_test() int message_count = 0, i; EVstone handle; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/block_test.c b/tests/block_test.c index 9bdf394bce..4e64d7db0f 100644 --- a/tests/block_test.c +++ b/tests/block_test.c @@ -371,7 +371,7 @@ do_regression_master_test() int expected_count = msg_limit; int done = 0; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/bulktest.c b/tests/bulktest.c index af28afa6c4..9068ffd1f7 100644 --- a/tests/bulktest.c +++ b/tests/bulktest.c @@ -513,7 +513,7 @@ do_regression_master_test() EVstone handle; int done = 0; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC)fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC)fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/cmconn.c b/tests/cmconn.c index 3bd777a2d0..189470903e 100644 --- a/tests/cmconn.c +++ b/tests/cmconn.c @@ -271,7 +271,7 @@ do_regression_master_test() CMFormat format; int message_count = 0; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/cmping.c b/tests/cmping.c index 56247e4633..23c7804f81 100644 --- a/tests/cmping.c +++ b/tests/cmping.c @@ -301,7 +301,7 @@ do_regression_master_test() char *string_list, *transport; int message_count = 0; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/congest_bulktest.c b/tests/congest_bulktest.c index a082f8bb1b..6d76a232c1 100644 --- a/tests/congest_bulktest.c +++ b/tests/congest_bulktest.c @@ -337,7 +337,7 @@ do_regression_master_test() int expected_count = msg_limit; int done = 0; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/congestion_test.c b/tests/congestion_test.c index 7fcf469c26..331646896a 100644 --- a/tests/congestion_test.c +++ b/tests/congestion_test.c @@ -355,7 +355,7 @@ do_regression_master_test() int expected_count = msg_limit; int done = 0; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/evtest.c b/tests/evtest.c index 7359753152..b13102dbf8 100644 --- a/tests/evtest.c +++ b/tests/evtest.c @@ -287,7 +287,7 @@ do_regression_master_test() EVstone handle; int i; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/extract_test.c b/tests/extract_test.c index 5e036c6657..5ef1816aed 100644 --- a/tests/extract_test.c +++ b/tests/extract_test.c @@ -360,7 +360,7 @@ do_regression_master_test() EVstone term0, term1, term2; struct _client_rec rec0, rec1, rec2; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/filter2_test.c b/tests/filter2_test.c index 6fb5f6d73a..accbf424f1 100644 --- a/tests/filter2_test.c +++ b/tests/filter2_test.c @@ -453,7 +453,7 @@ do_regression_master_test() EVstone term, fstone; EVaction faction; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/filter_test.c b/tests/filter_test.c index bc680fc189..9f04927e7e 100644 --- a/tests/filter_test.c +++ b/tests/filter_test.c @@ -323,7 +323,7 @@ do_regression_master_test(int do_dll) EVstone term, fstone; EVaction faction; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/http_test.c b/tests/http_test.c index f1ced50ea0..46bb40e661 100644 --- a/tests/http_test.c +++ b/tests/http_test.c @@ -272,7 +272,7 @@ do_regression_master_test() EVstone handle; int i; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/multi_thread.c b/tests/multi_thread.c index db740c3f0e..2397a1e1d1 100644 --- a/tests/multi_thread.c +++ b/tests/multi_thread.c @@ -173,7 +173,7 @@ main(int argc, char **argv) srand48(getpid()); #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/multiq_test.c b/tests/multiq_test.c index 163db5290d..2fe2919c99 100644 --- a/tests/multiq_test.c +++ b/tests/multiq_test.c @@ -370,7 +370,7 @@ do_regression_master_test() EVaction faction; int i; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/no_type_router_test.c b/tests/no_type_router_test.c index 3a49811360..6894d30898 100644 --- a/tests/no_type_router_test.c +++ b/tests/no_type_router_test.c @@ -319,7 +319,7 @@ do_regression_master_test() int i; struct _client_rec rec0, rec1, rec2; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/rawtest.c b/tests/rawtest.c index 0a40e4f819..5869a5b356 100644 --- a/tests/rawtest.c +++ b/tests/rawtest.c @@ -265,7 +265,7 @@ do_regression_master_test() simple_rec data; EVsource source_handle; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/rawtest2.c b/tests/rawtest2.c index 242ee5065c..3cbdd0ff8f 100644 --- a/tests/rawtest2.c +++ b/tests/rawtest2.c @@ -279,7 +279,7 @@ do_regression_master_test() simple_rec data; EVsource source_handle; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/router_test.c b/tests/router_test.c index d99d503971..4a3d946bdb 100644 --- a/tests/router_test.c +++ b/tests/router_test.c @@ -339,7 +339,7 @@ do_regression_master_test() EVaction faction; struct _client_rec rec0, rec1, rec2; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/router_test2.c b/tests/router_test2.c index 43a8919e2a..6f7c52823c 100644 --- a/tests/router_test2.c +++ b/tests/router_test2.c @@ -348,7 +348,7 @@ do_regression_master_test() EVstone term0, term1, term2; struct _client_rec rec0, rec1, rec2; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/split_test.c b/tests/split_test.c index 6aa2d22abd..a40e2afe9a 100644 --- a/tests/split_test.c +++ b/tests/split_test.c @@ -291,7 +291,7 @@ do_regression_master_test() int message_count = 0; EVstone handle; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/store_limit_test.c b/tests/store_limit_test.c index b60a151a24..cf9e45a9be 100644 --- a/tests/store_limit_test.c +++ b/tests/store_limit_test.c @@ -293,7 +293,7 @@ do_regression_master_test() EVstone term, fstone; EVaction faction; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/store_send_test.c b/tests/store_send_test.c index 127684b3a8..c9f8175f60 100644 --- a/tests/store_send_test.c +++ b/tests/store_send_test.c @@ -297,7 +297,7 @@ do_regression_master_test() EVstone term, fstone; EVaction faction; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/submit_test.c b/tests/submit_test.c index 7d7d933038..8d2465006a 100644 --- a/tests/submit_test.c +++ b/tests/submit_test.c @@ -333,7 +333,7 @@ do_regression_master_test() EVstone term, fstone; EVaction faction; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/take_test.c b/tests/take_test.c index c3add025ac..ff97f7f5d6 100644 --- a/tests/take_test.c +++ b/tests/take_test.c @@ -396,7 +396,7 @@ do_regression_master_test() attr_list listen_list = NULL; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/thin_test.c b/tests/thin_test.c index f6a3340d9d..3e13c45722 100644 --- a/tests/thin_test.c +++ b/tests/thin_test.c @@ -160,7 +160,7 @@ do_regression_master_test() char port_str[10]; char stone_str[10]; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/tests/transform_test.c b/tests/transform_test.c index c36a3f014f..48f7197426 100644 --- a/tests/transform_test.c +++ b/tests/transform_test.c @@ -364,7 +364,7 @@ do_regression_master_test(int do_dll) EVstone term, fstone; EVaction faction; #ifdef HAVE_WINDOWS_H - SetTimer(NULL, 5, 1000, (TIMERPROC) fail_and_die); + SetTimer(NULL, 5, 300*1000, (TIMERPROC) fail_and_die); #else struct sigaction sigact; sigact.sa_flags = 0; diff --git a/thin_server.c b/thin_server.c index 7384bffaa4..6e2080bd90 100644 --- a/thin_server.c +++ b/thin_server.c @@ -3,6 +3,7 @@ #include #include #ifdef HAVE_WINSOCK2_H +#define FD_SETSIZE 1024 #include #include #define drand48() (((double)rand())/((double)RAND_MAX)) From 40eeaee891efc947d6983d164a542b709f6af597 Mon Sep 17 00:00:00 2001 From: enet Upstream Date: Tue, 15 Aug 2023 21:30:10 -0400 Subject: [PATCH 091/183] enet 2023-08-15 (7587eb15) Code extracted from: https://github.com/GTkorvo/enet.git at commit 7587eb15e758d4bc30c44f4606af480fbbc2c67e (master). Upstream Shortlog ----------------- --- CMakeLists.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index bd32600586..9adc26da3f 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required(VERSION 3.3) +cmake_minimum_required(VERSION 3.5) project(ENET VERSION 1.3.14 LANGUAGES C) From c523d126d67c67fccb397868a0f4a4d222544c40 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Wed, 16 Aug 2023 12:55:30 -0400 Subject: [PATCH 092/183] cmake: resolve cmake python deprecation --- testing/adios2/engine/staging-common/TestSupp.cmake | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/testing/adios2/engine/staging-common/TestSupp.cmake b/testing/adios2/engine/staging-common/TestSupp.cmake index 24b71902b3..13ce1765a4 100644 --- a/testing/adios2/engine/staging-common/TestSupp.cmake +++ b/testing/adios2/engine/staging-common/TestSupp.cmake @@ -56,7 +56,7 @@ # resulting _CMD strings until add_common_test() which removes it. # -find_package(PythonInterp REQUIRED) +find_package(Python3 REQUIRED) # Change the STAGING_COMMON_TEST_SUPP_VERBOSE value to ON for debugging output # From 9a0c06092ede22f5ca1ef4955415bb3b03f00d89 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Wed, 16 Aug 2023 13:03:53 -0400 Subject: [PATCH 093/183] cmake: Remove enet config warning --- thirdparty/enet/CMakeLists.txt | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/thirdparty/enet/CMakeLists.txt b/thirdparty/enet/CMakeLists.txt index 5034e2e53a..ac82d3fdfd 100644 --- a/thirdparty/enet/CMakeLists.txt +++ b/thirdparty/enet/CMakeLists.txt @@ -9,7 +9,7 @@ set(ENET_LIBRARY_COMPONENT adios2_enet-libraries) set(ENET_ARCHIVE_COMPONENT adios2_enet-development) set(ENET_HEADER_COMPONENT adios2_enet-development) set(ENET_INSTALL_PKGCONFIG OFF) -set(BUILD_DOCS OFF) +set(BUILD_DOCS OFF CACHE BOOL "") add_subdirectory(enet) set(enet_DIR ${CMAKE_CURRENT_BINARY_DIR}/enet CACHE INTERNAL "") From 0f0a9df4ee36ae68828c773bf1cb244823f66565 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Fri, 11 Aug 2023 19:09:44 -0400 Subject: [PATCH 094/183] ci: add mgard dependency to spack builds --- .../cmake/ci-ubuntu20.04-clang10-ompi.cmake | 2 +- .../cmake/ci-ubuntu20.04-clang10-serial.cmake | 2 +- .../ci/cmake/ci-ubuntu20.04-clang6-ompi.cmake | 6 ++- .../cmake/ci-ubuntu20.04-clang6-serial.cmake | 3 +- .../ci/cmake/ci-ubuntu20.04-gcc10-mpich.cmake | 2 +- .../ci/cmake/ci-ubuntu20.04-gcc10-ompi.cmake | 3 ++ scripts/ci/gh-actions/run.sh | 19 +++----- .../Dockerfile.ci-spack-ubuntu20.04-base | 43 +++++++++++++------ .../Dockerfile.ci-spack-ubuntu20.04-clang | 3 +- scripts/ci/images/packages.yaml | 8 ++-- scripts/ci/images/specs.yaml | 7 ++- 11 files changed, 58 insertions(+), 40 deletions(-) diff --git a/scripts/ci/cmake/ci-ubuntu20.04-clang10-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-clang10-ompi.cmake index a5bfaa0c73..00535bb742 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-clang10-ompi.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-clang10-ompi.cmake @@ -12,8 +12,8 @@ execute_process( OUTPUT_STRIP_TRAILING_WHITESPACE) set(dashboard_cache " -ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_Blosc:BOOL=ON +ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_DataMan:BOOL=ON ADIOS2_USE_Fortran:BOOL=ON ADIOS2_USE_HDF5:BOOL=ON diff --git a/scripts/ci/cmake/ci-ubuntu20.04-clang10-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-clang10-serial.cmake index 9b60d90964..4782ca8159 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-clang10-serial.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-clang10-serial.cmake @@ -8,8 +8,8 @@ execute_process( OUTPUT_STRIP_TRAILING_WHITESPACE) set(dashboard_cache " -ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_Blosc:BOOL=ON +ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_DataMan:BOOL=ON ADIOS2_USE_Fortran:BOOL=ON ADIOS2_USE_HDF5:BOOL=ON diff --git a/scripts/ci/cmake/ci-ubuntu20.04-clang6-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-clang6-ompi.cmake index 27015806d8..b81654db20 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-clang6-ompi.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-clang6-ompi.cmake @@ -12,11 +12,12 @@ execute_process( OUTPUT_STRIP_TRAILING_WHITESPACE) set(dashboard_cache " -ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_Blosc:BOOL=ON +ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_DataMan:BOOL=ON ADIOS2_USE_Fortran:BOOL=ON ADIOS2_USE_HDF5:BOOL=ON +ADIOS2_USE_MGARD:BOOL=OFF ADIOS2_USE_MPI:BOOL=ON ADIOS2_USE_Python:BOOL=ON ADIOS2_USE_SZ:BOOL=ON @@ -37,6 +38,9 @@ MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} ") +# We have a dedicated build for this setup without MPI +set(CTEST_TEST_ARGS EXCLUDE ".Serial$") + set(CTEST_CMAKE_GENERATOR "Ninja") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/cmake/ci-ubuntu20.04-clang6-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-clang6-serial.cmake index f298fe20b6..7a50fd4e1b 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-clang6-serial.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-clang6-serial.cmake @@ -8,11 +8,12 @@ execute_process( OUTPUT_STRIP_TRAILING_WHITESPACE) set(dashboard_cache " -ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_Blosc:BOOL=ON +ADIOS2_USE_BZip2:BOOL=ON ADIOS2_USE_DataMan:BOOL=ON ADIOS2_USE_Fortran:BOOL=ON ADIOS2_USE_HDF5:BOOL=ON +ADIOS2_USE_MGARD:BOOL=OFF ADIOS2_USE_MPI:BOOL=OFF ADIOS2_USE_Python:BOOL=ON ADIOS2_USE_SZ:BOOL=ON diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc10-mpich.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc10-mpich.cmake index 1db0a5ee9f..c736627496 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-gcc10-mpich.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc10-mpich.cmake @@ -37,7 +37,7 @@ MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} ") set(CTEST_TEST_ARGS - EXCLUDE "Engine.BPEngineTest.SzComplex.MPI|Engine.BPEngineTest.ZfpComplex.MPI") + EXCLUDE "Engine.BPEngineTest.SzComplex.MPI|Engine.BPEngineTest.ZfpComplex.MPI|.Serial$") set(CTEST_CMAKE_GENERATOR "Ninja") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc10-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc10-ompi.cmake index b56bfc5f62..896041b043 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-gcc10-ompi.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc10-ompi.cmake @@ -37,6 +37,9 @@ MPIEXEC_EXTRA_FLAGS:STRING=--allow-run-as-root --oversubscribe MPIEXEC_MAX_NUMPROCS:STRING=${N2CPUS} ") +# We have a dedicated build for this setup without MPI +set(CTEST_TEST_ARGS EXCLUDE ".Serial$") + set(CTEST_CMAKE_GENERATOR "Ninja") list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/ci/gh-actions/run.sh b/scripts/ci/gh-actions/run.sh index 5020d18ee7..86d12a4b49 100755 --- a/scripts/ci/gh-actions/run.sh +++ b/scripts/ci/gh-actions/run.sh @@ -28,6 +28,7 @@ then else export CI_BUILD_NAME="${GITHUB_REF_NAME}_${GH_YML_JOBNAME}" fi + if [[ "${GH_YML_BASE_OS}" =~ "Windows" ]] then export CI_ROOT_DIR="${GITHUB_WORKSPACE//\\//}" @@ -75,24 +76,14 @@ then export OMPI_MCA_btl_base_warn_component_unused=0 export OMPI_MCA_btl_vader_single_copy_mechanism=none - # Force only shared mem backends - export OMPI_MCA_btl="self,vader" - - # Workaround for open-mpi/ompi#7516 - export OMPI_MCA_gds=hash - - # Workaround for open-mpi/ompi#5798 - export OMPI_MCA_btl_vader_backing_directory="/tmp" - # Enable overscription in OpenMPI export OMPI_MCA_rmaps_base_oversubscribe=1 export OMPI_MCA_hwloc_base_binding_policy=none +fi - # Disable OpenMPI rsh launching - export OMPI_MCA_plm_rsh_agent=false - - # Disable cuda warnings - export OMPI_MCA_opal_warn_on_missing_libcuda=0 +if [[ "${GH_YML_MATRIX_PARALLEL}" =~ ompi ]] +then + export HYDRA_LAUNCHER=fork fi # Make sure staging tests use localhost diff --git a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base index 084e1f7db3..6f55304208 100644 --- a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base +++ b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-base @@ -1,43 +1,60 @@ # vim: ft=dockerfile -FROM ecpe4s/ubuntu20.04:23.02 +FROM ecpe4s/ubuntu20.04:23.05 COPY packages.yaml /etc/spack/packages.yaml -COPY specs.yaml /tmp/specs.yaml +# Install Base specs RUN . /spack/share/spack/setup-env.sh && \ export ADIOS_SPEC_NO_MPI="adios2~mpi" && \ - export ADIOS_SPEC_OPENMPI="adios2+mpi^openmpi@4.1.4" && \ - export ADIOS_SPEC_MPICH="adios2+mpi^mpich device=ch3 netmod=tcp" && \ - spack env create adios2-ci-serial /tmp/specs.yaml && \ + export ADIOS_SPEC_OPENMPI="adios2+mpi^openmpi" && \ + export ADIOS_SPEC_MPICH="adios2+mpi^mpich" && \ + spack config add "config:checksum:false" && \ + spack config add "config:build_jobs:$(nproc)" && \ + spack config add "concretizer:unify:false" && \ + spack env create adios2-ci-serial && \ spack -e adios2-ci-serial add ${ADIOS_SPEC_NO_MPI} && \ spack -e adios2-ci-serial concretize && \ spack -e adios2-ci-serial install \ --include-build-deps \ --no-check-signature \ --fail-fast \ - --only dependencies \ - -j$(grep -c '^processor' /proc/cpuinfo) && \ - spack env create adios2-ci-ompi /tmp/specs.yaml && \ + --only dependencies && \ + spack env create adios2-ci-ompi && \ spack -e adios2-ci-ompi add ${ADIOS_SPEC_OPENMPI} && \ spack -e adios2-ci-ompi concretize && \ spack -e adios2-ci-ompi install \ --include-build-deps \ --no-check-signature \ --fail-fast \ - --only dependencies \ - -j$(grep -c '^processor' /proc/cpuinfo) && \ - spack env create adios2-ci-mpich /tmp/specs.yaml && \ + --only dependencies && \ + spack env create adios2-ci-mpich && \ spack -e adios2-ci-mpich add ${ADIOS_SPEC_MPICH} && \ spack -e adios2-ci-mpich concretize && \ spack -e adios2-ci-mpich install \ --include-build-deps \ --no-check-signature \ --fail-fast \ - --only dependencies \ - -j$(grep -c '^processor' /proc/cpuinfo) && \ + --only dependencies && \ spack clean -a && \ echo "source /spack/share/spack/setup-env.sh" >> /etc/profile.d/zz-spack.sh +# Install deps +RUN pip install shyaml +COPY specs.yaml /tmp/specs.yaml +RUN . /spack/share/spack/setup-env.sh && \ + spack env create adios2-ci-deps /tmp/specs.yaml && \ + spack -e adios2-ci-deps install \ + --no-check-signature \ + --include-build-deps \ + --fail-fast && \ + spack -e adios2-ci-serial add $(shyaml get-values spack.specs < /tmp/specs.yaml) && \ + spack -e adios2-ci-serial concretize && \ + spack -e adios2-ci-ompi add $(shyaml get-values spack.specs < /tmp/specs.yaml) && \ + spack -e adios2-ci-ompi concretize && \ + spack -e adios2-ci-mpich add $(shyaml get-values spack.specs < /tmp/specs.yaml) && \ + spack -e adios2-ci-mpich concretize && \ + spack clean -a + ### Other missing packages (compared to el8 base): RUN apt-get update && apt-get install -y \ ccache \ diff --git a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang index 7e3ffa619d..7e0654719a 100644 --- a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang +++ b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang @@ -2,5 +2,6 @@ FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base ARG CLANG_VERSION=10 RUN apt-get update && apt-get install -y \ - clang-${CLANG_VERSION} && \ + clang-${CLANG_VERSION} \ + libomp-dev && \ rm -rf /var/lib/apt/lists/* diff --git a/scripts/ci/images/packages.yaml b/scripts/ci/images/packages.yaml index 3ee74eaa66..b034552fcb 100644 --- a/scripts/ci/images/packages.yaml +++ b/scripts/ci/images/packages.yaml @@ -2,6 +2,8 @@ packages: all: target: [haswell] adios2: - require: +blosc+bzip2+zfp+sz+png+sst+dataman+ssc+hdf5+python+fortran - cmake: - version: [3.24] + require: '+blosc+bzip2+zfp+sz+png+sst+dataman+ssc+hdf5+python+fortran' + mpich: + require: 'device=ch3 netmod=tcp' + openmpi: + require: '@4.1' diff --git a/scripts/ci/images/specs.yaml b/scripts/ci/images/specs.yaml index e67f9a7f8f..7ec02d9a41 100644 --- a/scripts/ci/images/specs.yaml +++ b/scripts/ci/images/specs.yaml @@ -1,6 +1,5 @@ spack: view: true - config: - checksum: false - concretizer: - unify: false + specs: + # https://github.com/ornladios/ADIOS2/issues/3754 + - mgard@2023-01-10 From dd432c15899040aee549b1c91849b0c18a482127 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Sat, 12 Aug 2023 16:31:47 -0400 Subject: [PATCH 095/183] cmake: remove redundant pugixml dependency --- bindings/CXX11/CMakeLists.txt | 2 +- source/adios2/toolkit/remote/CMakeLists.txt | 16 +++++++++------- source/utils/CMakeLists.txt | 15 +++++++++++++-- 3 files changed, 23 insertions(+), 10 deletions(-) diff --git a/bindings/CXX11/CMakeLists.txt b/bindings/CXX11/CMakeLists.txt index 2be90fb64e..861764313b 100644 --- a/bindings/CXX11/CMakeLists.txt +++ b/bindings/CXX11/CMakeLists.txt @@ -24,7 +24,7 @@ add_library(adios2_cxx11 set_property(TARGET adios2_cxx11 PROPERTY EXPORT_NAME cxx11) set_property(TARGET adios2_cxx11 PROPERTY OUTPUT_NAME adios2${ADIOS2_LIBRARY_SUFFIX}_cxx11) -target_link_libraries(adios2_cxx11 PRIVATE adios2_core adios2::thirdparty::pugixml) +target_link_libraries(adios2_cxx11 PRIVATE adios2_core) target_compile_features(adios2_cxx11 INTERFACE ${ADIOS2_CXX11_FEATURES}) target_include_directories(adios2_cxx11 diff --git a/source/adios2/toolkit/remote/CMakeLists.txt b/source/adios2/toolkit/remote/CMakeLists.txt index 6062f73c5e..b3b49d6159 100644 --- a/source/adios2/toolkit/remote/CMakeLists.txt +++ b/source/adios2/toolkit/remote/CMakeLists.txt @@ -5,15 +5,17 @@ add_executable(remote_server ./remote_server.cpp remote_common.cpp) -target_link_libraries(remote_server - PUBLIC EVPath::EVPath - PUBLIC adios2_core adios2sys - PRIVATE adios2::thirdparty::pugixml $<$:shlwapi>) -target_include_directories(remote_server PRIVATE ${PROJECT_BINARY_DIR}) +target_link_libraries(remote_server PUBLIC EVPath::EVPath adios2_core adios2sys + PRIVATE $<$:shlwapi>) + +get_property(pugixml_headers_path + TARGET pugixml + PROPERTY INTERFACE_INCLUDE_DIRECTORIES +) + +target_include_directories(remote_server PRIVATE ${PROJECT_BINARY_DIR} ${pugixml_headers_path}) set_property(TARGET remote_server PROPERTY OUTPUT_NAME remote_server${ADIOS2_EXECUTABLE_SUFFIX}) install(TARGETS remote_server EXPORT adios2 RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} COMPONENT adios2_tools-runtime ) - - diff --git a/source/utils/CMakeLists.txt b/source/utils/CMakeLists.txt index 37153406c0..5d46d91c23 100644 --- a/source/utils/CMakeLists.txt +++ b/source/utils/CMakeLists.txt @@ -13,8 +13,19 @@ configure_file( add_executable(bpls ./bpls/bpls.cpp) target_link_libraries(bpls PUBLIC adios2_core adios2sys - PRIVATE adios2::thirdparty::pugixml $<$:shlwapi>) -target_include_directories(bpls PRIVATE ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR}/bindings/C) + PRIVATE $<$:shlwapi>) + +get_property(pugixml_headers_path + TARGET pugixml + PROPERTY INTERFACE_INCLUDE_DIRECTORIES +) + +target_include_directories(bpls PRIVATE + ${PROJECT_BINARY_DIR} + ${PROJECT_SOURCE_DIR}/bindings/C + ${pugixml_headers_path} +) + set_property(TARGET bpls PROPERTY OUTPUT_NAME bpls${ADIOS2_EXECUTABLE_SUFFIX}) install(TARGETS bpls EXPORT adios2 RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR} COMPONENT adios2_tools-runtime From fdb1bced6611d42fdbb9b6425e253eb5f8c5fa23 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Tue, 15 Aug 2023 16:13:42 -0400 Subject: [PATCH 096/183] ci: remove unused script part --- .shellcheck_exclude_paths | 1 - scripts/ci/gh-actions/linux-setup.sh | 15 ++------------- 2 files changed, 2 insertions(+), 14 deletions(-) diff --git a/.shellcheck_exclude_paths b/.shellcheck_exclude_paths index 08345abc0e..1ef95d56a2 100644 --- a/.shellcheck_exclude_paths +++ b/.shellcheck_exclude_paths @@ -2,7 +2,6 @@ scripts/ci/circle/postCDashStatus.sh scripts/ci/circle/run.sh scripts/ci/gh-actions/check-branch-name.sh scripts/ci/gh-actions/get-changed-files.sh -scripts/ci/gh-actions/linux-setup.sh scripts/ci/gh-actions/macos-setup.sh scripts/ci/gh-actions/run.sh scripts/ci/scripts/github-prs-to-gitlab.sh diff --git a/scripts/ci/gh-actions/linux-setup.sh b/scripts/ci/gh-actions/linux-setup.sh index d4ef4b632b..4d678ab731 100755 --- a/scripts/ci/gh-actions/linux-setup.sh +++ b/scripts/ci/gh-actions/linux-setup.sh @@ -5,7 +5,8 @@ set -ex export CI_ROOT_DIR="${GITHUB_WORKSPACE}/.." export CI_SOURCE_DIR="${GITHUB_WORKSPACE}/source" -declare -r local_scripts_dir="$(dirname -- $0)/config" +local_scripts_dir="$(dirname -- "$0")/config" +readonly local_scripts_dir echo "**********Install dependencies Begin**********" @@ -18,15 +19,3 @@ find "$local_scripts_dir" -type f -name '*.sh' -perm /a=x -exec ./{} \; find "$local_scripts_dir" -type f -name '*.cmake' -exec cmake --trace -VV -P {} \; echo "**********Install dependencies End**********" - -SETUP_SCRIPT=${CI_SOURCE_DIR}/scripts/ci/setup/ci-${GH_YML_JOBNAME}.sh - -if [ -x "${SETUP_SCRIPT}" ] -then - echo "**********Setup Begin**********" - echo "${SETUP_SCRIPT}" - "${SETUP_SCRIPT}" - echo "**********Setup End**********" -fi - -exit 0 From 41ed05356efc2bbc82c64eec0ba2715eb285da59 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Fri, 11 Aug 2023 19:56:00 -0400 Subject: [PATCH 097/183] fixup! ci: add mgard dependency to spack builds --- .github/workflows/everything.yml | 2 +- .../Dockerfile.ci-spack-ubuntu20.04-clang | 2 +- .../Dockerfile.ci-spack-ubuntu20.04-gcc | 2 +- .../Dockerfile.ci-spack-ubuntu20.04-intel | 2 +- scripts/ci/images/build-ubuntu.sh | 28 +++++++++---------- 5 files changed, 18 insertions(+), 18 deletions(-) diff --git a/.github/workflows/everything.yml b/.github/workflows/everything.yml index 680f0c5e8b..29029bf261 100644 --- a/.github/workflows/everything.yml +++ b/.github/workflows/everything.yml @@ -108,7 +108,7 @@ jobs: runs-on: ubuntu-20.04 container: - image: ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-${{ matrix.compiler }} + image: ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-${{ matrix.compiler }} options: --shm-size=1g env: GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}${{ matrix.shared == 'static' && '-static' || ''}}-${{ matrix.parallel }} diff --git a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang index 7e0654719a..162f47eb89 100644 --- a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang +++ b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang @@ -1,4 +1,4 @@ -FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base +FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-base ARG CLANG_VERSION=10 RUN apt-get update && apt-get install -y \ diff --git a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-gcc b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-gcc index 741ac230d4..9564723ea3 100644 --- a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-gcc +++ b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-gcc @@ -1,4 +1,4 @@ -FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base +FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-base ARG GCC_VERSION=8 RUN apt-get update && apt-get install -y \ diff --git a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-intel b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-intel index 2fe9ac6a8e..fe305c5bfd 100644 --- a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-intel +++ b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-intel @@ -1,4 +1,4 @@ -FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base +FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-base RUN wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | tee /usr/share/keyrings/oneapi-archive-keyring.gpg && \ echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | tee /etc/apt/sources.list.d/oneAPI.list && \ diff --git a/scripts/ci/images/build-ubuntu.sh b/scripts/ci/images/build-ubuntu.sh index 1a535c1203..b4ea53e133 100755 --- a/scripts/ci/images/build-ubuntu.sh +++ b/scripts/ci/images/build-ubuntu.sh @@ -3,25 +3,25 @@ set -ex # Build the base image -docker build --rm -f ./Dockerfile.ci-spack-ubuntu20.04-base -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base . +docker build --rm -f ./Dockerfile.ci-spack-ubuntu20.04-base -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-base . # Which is also the gcc11 image -docker tag ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc11 +docker tag ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-base ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc11 # Build the gcc8, gcc9, and gcc10 images -docker build --rm --build-arg GCC_VERSION=8 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc8 . -docker build --rm --build-arg GCC_VERSION=9 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc9 . -docker build --rm --build-arg GCC_VERSION=10 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc10 . +docker build --rm --build-arg GCC_VERSION=8 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc8 . +docker build --rm --build-arg GCC_VERSION=9 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc9 . +docker build --rm --build-arg GCC_VERSION=10 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc10 . # Build the clang6 and clang10 images -docker build --rm --build-arg CLANG_VERSION=6.0 -f ./Dockerfile.ci-spack-ubuntu20.04-clang -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang6 . -docker build --rm --build-arg CLANG_VERSION=10 -f ./Dockerfile.ci-spack-ubuntu20.04-clang -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang10 . +docker build --rm --build-arg CLANG_VERSION=6.0 -f ./Dockerfile.ci-spack-ubuntu20.04-clang -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-clang6 . +docker build --rm --build-arg CLANG_VERSION=10 -f ./Dockerfile.ci-spack-ubuntu20.04-clang -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-clang10 . # Push images to github container registry -docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base -docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc8 -docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc9 -docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc10 -docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc11 -docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang6 -docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang10 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-base +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc8 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc9 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc10 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc11 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-clang6 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-clang10 From a462b8be3742cf89c1658c46ac6210d09ed66187 Mon Sep 17 00:00:00 2001 From: KWSys Upstream Date: Thu, 25 May 2023 09:42:59 -0400 Subject: [PATCH 098/183] KWSys 2023-05-25 (c9f0da47) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Code extracted from: https://gitlab.kitware.com/utils/kwsys.git at commit c9f0da473ac2c21b25c1819141c4828dd238b4d3 (master). Upstream Shortlog ----------------- Ben Boeckel (2): 4226d5e5 Status: detect and diagnose X11 symbol conflicts 46f47034 SharedForward: Drop this component of KWSys Brad King (16): 591c4efb Activate POSIX APIs even without compiler extensions 45f20b83 Fix XL/XLClang warning suppression under CMP0089 NEW behavior 257b1111 Configure with policies through CMake 3.22 b72169e5 Process: Suppress clang -Wshorten-64-to-32 diagnostic on macOS 30e10c87 SystemTools: Report with copy operation failures which path failed 6c66ba9e clang-format.bash: Use generic clang-format attribute 82ae3f28 clang-format.bash: update to clang-format-15 a61d0ad6 Empty commit at end of history preceding clang-format-15 style transition 3cb35bf3 CONTRIBUTING: Update documented clang-format version to 15 5df8c0a1 RegularExpression: Extend max paren groups from 10 to 32 bfa688b5 SystemTools: Drop optional FindProgramPath arguments 093d6e45 DynamicLoader: Update test to avoid using CMAKE_INTDIR c3201073 String.hxx: Drop this component of KWSys b4492d09 cmake: Drop use of legacy "Dart" module 51272e80 SystemTools: Avoid macOS copyfile semantic differences as root 199aa713 RegularExpression: Tell clang-analyzer that program memory is initialized Clemens Wasser (6): ab7c8f6f SystemTools: Factor out RemoveTrailingSlashes ca9646bd SystemTools: Optimize FileIsExecutable on Windows 1c156fd1 SystemTools: Better GetCasePathName caching 9e48ae84 SystemTools: Readd direct GetCasePathName caching 0cac8ee5 Directory: Use Win32 find file functions 550b5734 SystemTools: Use unordered_map for path caches Kitware Robot (1): f685d817 Revise C++ coding style using clang-format-15 Michael Hirsch (1): f0223ad1 SystemInformation: correct function name spelling Saleem Abdulrasool (1): 0969597d SystemTools: add a clonefile optimization on macOS Sean McBride (1): d6c6fd82 testDirectory: Rename functions to fix -Wreserved-identifier warnings Timo Röhling (1): 9119f1a1 SystemInformation: Tolerate empty /proc/cpuinfo scivision (1): e76a8438 Remove try_compile logging in favor of CMake>=3.26 configure log --- .gitattributes | 2 +- CMakeLists.txt | 38 +- CONTRIBUTING.rst | 2 +- CommandLineArguments.cxx | 15 +- Directory.cxx | 39 +- Glob.cxx | 4 +- ProcessUNIX.c | 17 + ProcessWin32.c | 5 +- RegularExpression.cxx | 60 ++- RegularExpression.hxx.in | 10 +- SharedForward.h.in | 873 -------------------------------------- Status.hxx.in | 10 + String.hxx.in | 57 --- SystemInformation.cxx | 10 +- SystemTools.cxx | 255 +++++++---- SystemTools.hxx.in | 49 ++- Terminal.c | 4 + kwsysPlatformTests.cmake | 63 +-- kwsysPrivate.h | 2 +- testConfigure.cxx | 2 +- testConsoleBuf.cxx | 2 +- testDirectory.cxx | 11 +- testDynamicLoader.cxx | 4 +- testEncoding.cxx | 2 +- testFStream.cxx | 2 +- testProcess.c | 4 + testSharedForward.c.in | 27 -- testStatus.cxx | 2 +- testSystemInformation.cxx | 2 +- testSystemTools.cxx | 2 +- 30 files changed, 395 insertions(+), 1180 deletions(-) delete mode 100644 SharedForward.h.in delete mode 100644 String.hxx.in delete mode 100644 testSharedForward.c.in diff --git a/.gitattributes b/.gitattributes index b4e6160fda..1ae02445f1 100644 --- a/.gitattributes +++ b/.gitattributes @@ -4,7 +4,7 @@ .hooks* export-ignore # Custom attribute to mark sources as using the kwsys C code style. -[attr]kwsys-c-style whitespace=tab-in-indent format.clang-format +[attr]kwsys-c-style whitespace=tab-in-indent format.clang-format=15 /GitSetup export-ignore /*.sh export-ignore eol=lf diff --git a/CMakeLists.txt b/CMakeLists.txt index 2253a83a9e..2b8eedd4e9 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -88,17 +88,7 @@ # any outside mailing list and no documentation of the change will be # written. -cmake_minimum_required(VERSION 3.1 FATAL_ERROR) -foreach(p - CMP0056 # CMake 3.2, Honor link flags in try_compile() source-file signature. - CMP0063 # CMake 3.3, Honor visibility properties for all target types. - CMP0067 # CMake 3.8, Honor language standard in try_compile source-file signature. - CMP0069 # CMake 3.9, INTERPROCEDURAL_OPTIMIZATION is enforced when enabled. - ) - if(POLICY ${p}) - cmake_policy(SET ${p} NEW) - endif() -endforeach() +cmake_minimum_required(VERSION 3.9...3.22 FATAL_ERROR) # Some configure checks depend upon the deployment target. Clear checks when # the deployment target changes. @@ -211,11 +201,7 @@ endif() # Enable testing if building standalone. if(KWSYS_STANDALONE) - include(Dart) - mark_as_advanced(BUILD_TESTING DART_ROOT TCL_TCLSH) - if(BUILD_TESTING) - enable_testing() - endif() + include(CTest) endif() # Choose default shared/static build if not specified. @@ -640,8 +626,8 @@ endif() # Build a list of classes and headers we need to implement the # selected components. Initialize with required components. set(KWSYS_CLASSES) -set(KWSYS_H_FILES Configure SharedForward) -set(KWSYS_HXX_FILES Configure String) +set(KWSYS_H_FILES Configure) +set(KWSYS_HXX_FILES Configure) # Add selected C++ classes. set(cppclasses @@ -1048,6 +1034,10 @@ if(KWSYS_STANDALONE OR CMake_SOURCE_DIR) set_property(TARGET ${KWSYS_NAMESPACE}TestsCxx PROPERTY CXX_INCLUDE_WHAT_YOU_USE "") set_property(TARGET ${KWSYS_NAMESPACE}TestsCxx PROPERTY LABELS ${KWSYS_LABELS_EXE}) target_link_libraries(${KWSYS_NAMESPACE}TestsCxx ${KWSYS_TARGET_LINK}) + get_property(_isMultiConfig GLOBAL PROPERTY GENERATOR_IS_MULTI_CONFIG) + if(_isMultiConfig) + set_property(TARGET ${KWSYS_NAMESPACE}TestsCxx APPEND PROPERTY COMPILE_DEFINITIONS BUILD_CONFIG="$") + endif() set(TEST_SYSTEMTOOLS_SOURCE_DIR "${CMAKE_CURRENT_SOURCE_DIR}") set(TEST_SYSTEMTOOLS_BINARY_DIR "${CMAKE_CURRENT_BINARY_DIR}") @@ -1111,7 +1101,7 @@ if(KWSYS_STANDALONE OR CMake_SOURCE_DIR) # Some Apple compilers produce bad optimizations in this source. if(APPLE AND CMAKE_C_COMPILER_ID MATCHES "^(GNU|LLVM)$") set(testProcess_COMPILE_FLAGS "${testProcess_COMPILE_FLAGS} -O0") - elseif(CMAKE_C_COMPILER_ID STREQUAL "XL") + elseif(CMAKE_C_COMPILER_ID MATCHES "^(XL|XLClang)$") # Tell IBM XL not to warn about our test infinite loop if(CMAKE_SYSTEM MATCHES "Linux.*ppc64le" AND CMAKE_C_COMPILER_VERSION VERSION_LESS "16.1.0" @@ -1128,16 +1118,6 @@ if(KWSYS_STANDALONE OR CMake_SOURCE_DIR) endif() set_property(SOURCE testProcess.c PROPERTY COMPILE_FLAGS "${testProcess_COMPILE_FLAGS}") - # Test SharedForward - configure_file(${PROJECT_SOURCE_DIR}/testSharedForward.c.in - ${PROJECT_BINARY_DIR}/testSharedForward.c @ONLY IMMEDIATE) - add_executable(${KWSYS_NAMESPACE}TestSharedForward - ${PROJECT_BINARY_DIR}/testSharedForward.c) - set_property(TARGET ${KWSYS_NAMESPACE}TestSharedForward PROPERTY LABELS ${KWSYS_LABELS_EXE}) - add_dependencies(${KWSYS_NAMESPACE}TestSharedForward ${KWSYS_TARGET_C_LINK}) - add_test(kwsys.testSharedForward ${EXEC_DIR}/${KWSYS_NAMESPACE}TestSharedForward 1) - set_property(TEST kwsys.testSharedForward PROPERTY LABELS ${KWSYS_LABELS_TEST}) - # Configure some test properties. if(KWSYS_STANDALONE) # We expect test to fail diff --git a/CONTRIBUTING.rst b/CONTRIBUTING.rst index 32e7b83c5b..ebd3ed355a 100644 --- a/CONTRIBUTING.rst +++ b/CONTRIBUTING.rst @@ -27,7 +27,7 @@ copies of KWSys within dependent projects can be updated to get the changes. Code Style ========== -We use `clang-format`_ version **6.0** to define our style for C++ code in +We use `clang-format`_ version **15** to define our style for C++ code in the KWSys source tree. See the `.clang-format`_ configuration file for our style settings. Use the `clang-format.bash`_ script to format source code. It automatically runs ``clang-format`` on the set of source files diff --git a/CommandLineArguments.cxx b/CommandLineArguments.cxx index e45db36ac2..50171dd3c6 100644 --- a/CommandLineArguments.cxx +++ b/CommandLineArguments.cxx @@ -4,20 +4,19 @@ #include KWSYS_HEADER(CommandLineArguments.hxx) #include KWSYS_HEADER(Configure.hxx) -#include KWSYS_HEADER(String.hxx) // Work-around CMake dependency scanning limitation. This must // duplicate the above list of headers. #if 0 # include "CommandLineArguments.hxx.in" # include "Configure.hxx.in" -# include "String.hxx.in" #endif #include #include #include #include +#include #include #include @@ -52,14 +51,14 @@ struct CommandLineArgumentsCallbackStructure const char* Help; }; -class CommandLineArgumentsVectorOfStrings : public std::vector +class CommandLineArgumentsVectorOfStrings : public std::vector { }; -class CommandLineArgumentsSetOfStrings : public std::set +class CommandLineArgumentsSetOfStrings : public std::set { }; class CommandLineArgumentsMapOfStrucs - : public std::map + : public std::map { }; @@ -70,7 +69,7 @@ class CommandLineArgumentsInternal using VectorOfStrings = CommandLineArgumentsVectorOfStrings; using CallbacksMap = CommandLineArgumentsMapOfStrucs; - using String = kwsys::String; + using String = std::string; using SetOfStrings = CommandLineArgumentsSetOfStrings; VectorOfStrings Argv; @@ -306,7 +305,7 @@ void CommandLineArguments::GetUnusedArguments(int* argc, char*** argv) // Copy everything after the LastArgument, since that was not parsed. for (cc = 0; cc < this->Internals->UnusedArguments.size(); cc++) { - kwsys::String& str = this->Internals->UnusedArguments[cc]; + std::string& str = this->Internals->UnusedArguments[cc]; args[cnt] = new char[str.size() + 1]; strcpy(args[cnt], str.c_str()); cnt++; @@ -319,7 +318,7 @@ void CommandLineArguments::DeleteRemainingArguments(int argc, char*** argv) { int cc; for (cc = 0; cc < argc; ++cc) { - delete[](*argv)[cc]; + delete[] (*argv)[cc]; } delete[] * argv; } diff --git a/Directory.cxx b/Directory.cxx index d520c14404..f239576efe 100644 --- a/Directory.cxx +++ b/Directory.cxx @@ -43,12 +43,12 @@ class DirectoryInternals { std::string Name; #if defined(_WIN32) && !defined(__CYGWIN__) - _wfinddata_t FindData; + WIN32_FIND_DATAW FindData; #endif FileData(std::string name #if defined(_WIN32) && !defined(__CYGWIN__) , - _wfinddata_t data + WIN32_FIND_DATAW data #endif ) : Name(std::move(name)) @@ -115,8 +115,8 @@ std::string Directory::GetFilePath(std::size_t i) const bool Directory::FileIsDirectory(std::size_t i) const { #if defined(_WIN32) && !defined(__CYGWIN__) - _wfinddata_t const& data = this->Internal->Files[i].FindData; - return (data.attrib & FILE_ATTRIBUTE_DIRECTORY) != 0; + auto const& data = this->Internal->Files[i].FindData; + return (data.dwFileAttributes & FILE_ATTRIBUTE_DIRECTORY) != 0; #else std::string const& path = this->GetFilePath(i); return kwsys::SystemTools::FileIsDirectory(path); @@ -127,9 +127,9 @@ bool Directory::FileIsSymlink(std::size_t i) const { std::string const& path = this->GetFilePath(i); #if defined(_WIN32) && !defined(__CYGWIN__) - _wfinddata_t const& data = this->Internal->Files[i].FindData; + auto const& data = this->Internal->Files[i].FindData; return kwsys::SystemTools::FileIsSymlinkWithAttr( - Encoding::ToWindowsExtendedPath(path), data.attrib); + Encoding::ToWindowsExtendedPath(path), data.dwFileAttributes); #else return kwsys::SystemTools::FileIsSymlink(path); #endif @@ -157,7 +157,7 @@ namespace KWSYS_NAMESPACE { Status Directory::Load(std::string const& name, std::string* errorMessage) { this->Clear(); - intptr_t srchHandle; + HANDLE srchHandle; char* buf; size_t bufLength; size_t n = name.size(); @@ -176,14 +176,14 @@ Status Directory::Load(std::string const& name, std::string* errorMessage) snprintf(buf, bufLength, "%s/*", name.c_str()); } } - struct _wfinddata_t data; // data of current file + WIN32_FIND_DATAW data; // data of current file // Now put them into the file array srchHandle = - _wfindfirst((wchar_t*)Encoding::ToWindowsExtendedPath(buf).c_str(), &data); + FindFirstFileW(Encoding::ToWindowsExtendedPath(buf).c_str(), &data); delete[] buf; - if (srchHandle == -1) { + if (srchHandle == INVALID_HANDLE_VALUE) { Status status = Status::POSIX_errno(); if (errorMessage) { *errorMessage = status.GetString(); @@ -193,10 +193,11 @@ Status Directory::Load(std::string const& name, std::string* errorMessage) // Loop through names do { - this->Internal->Files.emplace_back(Encoding::ToNarrow(data.name), data); - } while (_wfindnext(srchHandle, &data) != -1); + this->Internal->Files.emplace_back(Encoding::ToNarrow(data.cFileName), + data); + } while (FindNextFileW(srchHandle, &data)); this->Internal->Path = name; - if (_findclose(srchHandle) == -1) { + if (!FindClose(srchHandle)) { Status status = Status::POSIX_errno(); if (errorMessage) { *errorMessage = status.GetString(); @@ -209,7 +210,7 @@ Status Directory::Load(std::string const& name, std::string* errorMessage) unsigned long Directory::GetNumberOfFilesInDirectory(const std::string& name, std::string* errorMessage) { - intptr_t srchHandle; + HANDLE srchHandle; char* buf; size_t bufLength; size_t n = name.size(); @@ -222,13 +223,13 @@ unsigned long Directory::GetNumberOfFilesInDirectory(const std::string& name, buf = new char[n + 2 + 1]; snprintf(buf, bufLength, "%s/*", name.c_str()); } - struct _wfinddata_t data; // data of current file + WIN32_FIND_DATAW data; // data of current file // Now put them into the file array - srchHandle = _wfindfirst((wchar_t*)Encoding::ToWide(buf).c_str(), &data); + srchHandle = FindFirstFileW(Encoding::ToWide(buf).c_str(), &data); delete[] buf; - if (srchHandle == -1) { + if (srchHandle == INVALID_HANDLE_VALUE) { if (errorMessage) { if (unsigned int errorId = GetLastError()) { LPSTR message = nullptr; @@ -250,8 +251,8 @@ unsigned long Directory::GetNumberOfFilesInDirectory(const std::string& name, unsigned long count = 0; do { count++; - } while (_wfindnext(srchHandle, &data) != -1); - _findclose(srchHandle); + } while (FindNextFileW(srchHandle, &data)); + FindClose(srchHandle); return count; } diff --git a/Glob.cxx b/Glob.cxx index fa2c295e33..92eae4121e 100644 --- a/Glob.cxx +++ b/Glob.cxx @@ -390,8 +390,8 @@ bool Glob::FindFiles(const std::string& inexpr, GlobMessages* messages) #endif // Handle drive letters on Windows if (expr[1] == ':' && expr[0] != '/') { - skip = 2; - } + skip = 2; + } } if (skip > 0) { diff --git a/ProcessUNIX.c b/ProcessUNIX.c index 22cbf06427..b25b2580d2 100644 --- a/ProcessUNIX.c +++ b/ProcessUNIX.c @@ -1,5 +1,9 @@ /* Distributed under the OSI-approved BSD 3-Clause License. See accompanying file Copyright.txt or https://cmake.org/licensing#kwsys for details. */ +#if !defined(_WIN32) && !defined(__APPLE__) && !defined(__OpenBSD__) +/* NOLINTNEXTLINE(bugprone-reserved-identifier) */ +# define _XOPEN_SOURCE 600 +#endif #include "kwsysPrivate.h" #include KWSYS_HEADER(Process.h) #include KWSYS_HEADER(System.h) @@ -2007,6 +2011,14 @@ static int kwsysProcessGetTimeoutTime(kwsysProcess* cp, return 0; } +#if defined(__clang__) && defined(__has_warning) +# if __has_warning("-Wshorten-64-to-32") +# pragma clang diagnostic push +# pragma clang diagnostic ignored "-Wshorten-64-to-32" +# define KWSYSPE_CLANG_DIAG_WSHORTEN +# endif +#endif + /* Get the length of time before the given timeout time arrives. Returns 1 if the time has already arrived, and 0 otherwise. */ static int kwsysProcessGetTimeoutLeft(kwsysProcessTime* timeoutTime, @@ -2057,6 +2069,11 @@ static kwsysProcessTime kwsysProcessTimeGetCurrent(void) return current; } +#if defined(KWSYSPE_CLANG_DIAG_WSHORTEN) +# undef KWSYSPE_CLANG_DIAG_WSHORTEN +# pragma clang diagnostic pop +#endif + static double kwsysProcessTimeToDouble(kwsysProcessTime t) { return (double)t.tv_sec + (double)(t.tv_usec) * 0.000001; diff --git a/ProcessWin32.c b/ProcessWin32.c index 17e15075bf..0b43b4a2af 100644 --- a/ProcessWin32.c +++ b/ProcessWin32.c @@ -2406,8 +2406,9 @@ static int kwsysProcess_List__Next_NT4(kwsysProcess_List* self) { if (self->CurrentInfo) { if (self->CurrentInfo->NextEntryDelta > 0) { - self->CurrentInfo = ((PSYSTEM_PROCESS_INFORMATION)( - (char*)self->CurrentInfo + self->CurrentInfo->NextEntryDelta)); + self->CurrentInfo = + ((PSYSTEM_PROCESS_INFORMATION)((char*)self->CurrentInfo + + self->CurrentInfo->NextEntryDelta)); return 1; } self->CurrentInfo = 0; diff --git a/RegularExpression.cxx b/RegularExpression.cxx index fb4e38029a..b51e16d8ae 100644 --- a/RegularExpression.cxx +++ b/RegularExpression.cxx @@ -218,7 +218,7 @@ bool RegularExpression::deep_equal(const RegularExpression& rxp) const 20 // no Mark this point in input as start of // #n. // OPEN+1 is number 1, etc. -#define CLOSE 30 // no Analogous to OPEN. +#define CLOSE 52 // no Analogous to OPEN. /* * Opcode notes: @@ -366,9 +366,9 @@ bool RegularExpression::compile(const char* exp) } // Allocate space. - //#ifndef _WIN32 + // #ifndef _WIN32 delete[] this->program; - //#endif + // #endif this->program = new char[comp.regsize]; this->progsize = static_cast(comp.regsize); @@ -378,6 +378,10 @@ bool RegularExpression::compile(const char* exp) return false; } +#ifdef __clang_analyzer__ /* Convince it that the program is initialized. */ + memset(this->program, 0, comp.regsize); +#endif + // Second pass: emit code. comp.regparse = exp; comp.regnpar = 1; @@ -1018,7 +1022,30 @@ int RegExpFind::regmatch(const char* prog) case OPEN + 6: case OPEN + 7: case OPEN + 8: - case OPEN + 9: { + case OPEN + 9: + case OPEN + 10: + case OPEN + 11: + case OPEN + 12: + case OPEN + 13: + case OPEN + 14: + case OPEN + 15: + case OPEN + 16: + case OPEN + 17: + case OPEN + 18: + case OPEN + 19: + case OPEN + 20: + case OPEN + 21: + case OPEN + 22: + case OPEN + 23: + case OPEN + 24: + case OPEN + 25: + case OPEN + 26: + case OPEN + 27: + case OPEN + 28: + case OPEN + 29: + case OPEN + 30: + case OPEN + 31: + case OPEN + 32: { int no; const char* save; @@ -1046,7 +1073,30 @@ int RegExpFind::regmatch(const char* prog) case CLOSE + 6: case CLOSE + 7: case CLOSE + 8: - case CLOSE + 9: { + case CLOSE + 9: + case CLOSE + 10: + case CLOSE + 11: + case CLOSE + 12: + case CLOSE + 13: + case CLOSE + 14: + case CLOSE + 15: + case CLOSE + 16: + case CLOSE + 17: + case CLOSE + 18: + case CLOSE + 19: + case CLOSE + 20: + case CLOSE + 21: + case CLOSE + 22: + case CLOSE + 23: + case CLOSE + 24: + case CLOSE + 25: + case CLOSE + 26: + case CLOSE + 27: + case CLOSE + 28: + case CLOSE + 29: + case CLOSE + 30: + case CLOSE + 31: + case CLOSE + 32: { int no; const char* save; diff --git a/RegularExpression.hxx.in b/RegularExpression.hxx.in index 2709cde5f4..1dc1dfa208 100644 --- a/RegularExpression.hxx.in +++ b/RegularExpression.hxx.in @@ -50,7 +50,7 @@ public: enum { - NSUBEXP = 10 + NSUBEXP = 32 }; private: @@ -456,9 +456,9 @@ inline RegularExpression::RegularExpression(const std::string& s) */ inline RegularExpression::~RegularExpression() { - //#ifndef _WIN32 + // #ifndef _WIN32 delete[] this->program; - //#endif + // #endif } /** @@ -556,9 +556,9 @@ inline bool RegularExpression::is_valid() const inline void RegularExpression::set_invalid() { - //#ifndef _WIN32 + // #ifndef _WIN32 delete[] this->program; - //#endif + // #endif this->program = nullptr; } diff --git a/SharedForward.h.in b/SharedForward.h.in deleted file mode 100644 index d6ae75c47b..0000000000 --- a/SharedForward.h.in +++ /dev/null @@ -1,873 +0,0 @@ -/* Distributed under the OSI-approved BSD 3-Clause License. See accompanying - file Copyright.txt or https://cmake.org/licensing#kwsys for details. */ -#ifndef @KWSYS_NAMESPACE@_SharedForward_h -# define @KWSYS_NAMESPACE@_SharedForward_h - -/* - This header is used to create a forwarding executable sets up the - shared library search path and replaces itself with a real - executable. This is useful when creating installations on UNIX with - shared libraries that will run from any install directory. Typical - usage: - - #if defined(CMAKE_INTDIR) - # define CONFIG_DIR_PRE CMAKE_INTDIR "/" - # define CONFIG_DIR_POST "/" CMAKE_INTDIR - #else - # define CONFIG_DIR_PRE "" - # define CONFIG_DIR_POST "" - #endif - #define @KWSYS_NAMESPACE@_SHARED_FORWARD_DIR_BUILD "/path/to/foo-build/bin" - #define @KWSYS_NAMESPACE@_SHARED_FORWARD_PATH_BUILD "." CONFIG_DIR_POST - #define @KWSYS_NAMESPACE@_SHARED_FORWARD_PATH_INSTALL "../lib/foo-1.2" - #define @KWSYS_NAMESPACE@_SHARED_FORWARD_EXE_BUILD CONFIG_DIR_PRE "foo-real" - #define @KWSYS_NAMESPACE@_SHARED_FORWARD_EXE_INSTALL - "../lib/foo-1.2/foo-real" - #define @KWSYS_NAMESPACE@_SHARED_FORWARD_OPTION_COMMAND "--command" - #define @KWSYS_NAMESPACE@_SHARED_FORWARD_OPTION_PRINT "--print" - #define @KWSYS_NAMESPACE@_SHARED_FORWARD_OPTION_LDD "--ldd" - #if defined(CMAKE_INTDIR) - # define @KWSYS_NAMESPACE@_SHARED_FORWARD_CONFIG_NAME CMAKE_INTDIR - #endif - #include <@KWSYS_NAMESPACE@/SharedForward.h> - int main(int argc, char** argv) - { - return @KWSYS_NAMESPACE@_shared_forward_to_real(argc, argv); - } - - Specify search and executable paths relative to the forwarding - executable location or as full paths. Include no trailing slash. - In the case of a multi-configuration build, when CMAKE_INTDIR is - defined, the DIR_BUILD setting should point at the directory above - the executable (the one containing the per-configuration - subdirectory specified by CMAKE_INTDIR). Then PATH_BUILD entries - and EXE_BUILD should be specified relative to this location and use - CMAKE_INTDIR as necessary. In the above example imagine appending - the PATH_BUILD or EXE_BUILD setting to the DIR_BUILD setting. The - result should form a valid path with per-configuration subdirectory. - - Additional paths may be specified in the PATH_BUILD and PATH_INSTALL - variables by using comma-separated strings. For example: - - #define @KWSYS_NAMESPACE@_SHARED_FORWARD_PATH_BUILD \ - "." CONFIG_DIR_POST, "/path/to/bar-build" CONFIG_DIR_POST - #define @KWSYS_NAMESPACE@_SHARED_FORWARD_PATH_INSTALL \ - "../lib/foo-1.2", "../lib/bar-4.5" - - See the comments below for specific explanations of each macro. -*/ - -/* Disable -Wcast-qual warnings since they are too hard to fix in a - cross-platform way. */ -# if defined(__clang__) && defined(__has_warning) -# if __has_warning("-Wcast-qual") -# pragma clang diagnostic push -# pragma clang diagnostic ignored "-Wcast-qual" -# endif -# endif - -/* Full path to the directory in which this executable is built. Do - not include a trailing slash. */ -# if !defined(@KWSYS_NAMESPACE@_SHARED_FORWARD_DIR_BUILD) -# error "Must define @KWSYS_NAMESPACE@_SHARED_FORWARD_DIR_BUILD" -# endif -# if !defined(KWSYS_SHARED_FORWARD_DIR_BUILD) -# define KWSYS_SHARED_FORWARD_DIR_BUILD \ - @KWSYS_NAMESPACE@_SHARED_FORWARD_DIR_BUILD -# endif - -/* Library search path for build tree. */ -# if !defined(@KWSYS_NAMESPACE@_SHARED_FORWARD_PATH_BUILD) -# error "Must define @KWSYS_NAMESPACE@_SHARED_FORWARD_PATH_BUILD" -# endif -# if !defined(KWSYS_SHARED_FORWARD_PATH_BUILD) -# define KWSYS_SHARED_FORWARD_PATH_BUILD \ - @KWSYS_NAMESPACE@_SHARED_FORWARD_PATH_BUILD -# endif - -/* Library search path for install tree. */ -# if !defined(@KWSYS_NAMESPACE@_SHARED_FORWARD_PATH_INSTALL) -# error "Must define @KWSYS_NAMESPACE@_SHARED_FORWARD_PATH_INSTALL" -# endif -# if !defined(KWSYS_SHARED_FORWARD_PATH_INSTALL) -# define KWSYS_SHARED_FORWARD_PATH_INSTALL \ - @KWSYS_NAMESPACE@_SHARED_FORWARD_PATH_INSTALL -# endif - -/* The real executable to which to forward in the build tree. */ -# if !defined(@KWSYS_NAMESPACE@_SHARED_FORWARD_EXE_BUILD) -# error "Must define @KWSYS_NAMESPACE@_SHARED_FORWARD_EXE_BUILD" -# endif -# if !defined(KWSYS_SHARED_FORWARD_EXE_BUILD) -# define KWSYS_SHARED_FORWARD_EXE_BUILD \ - @KWSYS_NAMESPACE@_SHARED_FORWARD_EXE_BUILD -# endif - -/* The real executable to which to forward in the install tree. */ -# if !defined(@KWSYS_NAMESPACE@_SHARED_FORWARD_EXE_INSTALL) -# error "Must define @KWSYS_NAMESPACE@_SHARED_FORWARD_EXE_INSTALL" -# endif -# if !defined(KWSYS_SHARED_FORWARD_EXE_INSTALL) -# define KWSYS_SHARED_FORWARD_EXE_INSTALL \ - @KWSYS_NAMESPACE@_SHARED_FORWARD_EXE_INSTALL -# endif - -/* The configuration name with which this executable was built (Debug/Release). - */ -# if defined(@KWSYS_NAMESPACE@_SHARED_FORWARD_CONFIG_NAME) -# define KWSYS_SHARED_FORWARD_CONFIG_NAME \ - @KWSYS_NAMESPACE@_SHARED_FORWARD_CONFIG_NAME -# else -# undef KWSYS_SHARED_FORWARD_CONFIG_NAME -# endif - -/* Create command line option to replace executable. */ -# if defined(@KWSYS_NAMESPACE@_SHARED_FORWARD_OPTION_COMMAND) -# if !defined(KWSYS_SHARED_FORWARD_OPTION_COMMAND) -# define KWSYS_SHARED_FORWARD_OPTION_COMMAND \ - @KWSYS_NAMESPACE@_SHARED_FORWARD_OPTION_COMMAND -# endif -# else -# undef KWSYS_SHARED_FORWARD_OPTION_COMMAND -# endif - -/* Create command line option to print environment setting and exit. */ -# if defined(@KWSYS_NAMESPACE@_SHARED_FORWARD_OPTION_PRINT) -# if !defined(KWSYS_SHARED_FORWARD_OPTION_PRINT) -# define KWSYS_SHARED_FORWARD_OPTION_PRINT \ - @KWSYS_NAMESPACE@_SHARED_FORWARD_OPTION_PRINT -# endif -# else -# undef KWSYS_SHARED_FORWARD_OPTION_PRINT -# endif - -/* Create command line option to run ldd or equivalent. */ -# if defined(@KWSYS_NAMESPACE@_SHARED_FORWARD_OPTION_LDD) -# if !defined(KWSYS_SHARED_FORWARD_OPTION_LDD) -# define KWSYS_SHARED_FORWARD_OPTION_LDD \ - @KWSYS_NAMESPACE@_SHARED_FORWARD_OPTION_LDD -# endif -# else -# undef KWSYS_SHARED_FORWARD_OPTION_LDD -# endif - -/* Include needed system headers. */ - -# include -# include -# include /* size_t */ -# include -# include -# include - -# if defined(_WIN32) && !defined(__CYGWIN__) -# include - -# include -# include -# define KWSYS_SHARED_FORWARD_ESCAPE_ARGV /* re-escape argv for execvp */ -# else -# include -# include -# endif - -/* Configuration for this platform. */ - -/* The path separator for this platform. */ -# if defined(_WIN32) && !defined(__CYGWIN__) -# define KWSYS_SHARED_FORWARD_PATH_SEP ';' -# define KWSYS_SHARED_FORWARD_PATH_SLASH '\\' -# else -# define KWSYS_SHARED_FORWARD_PATH_SEP ':' -# define KWSYS_SHARED_FORWARD_PATH_SLASH '/' -# endif -static const char kwsys_shared_forward_path_sep[2] = { - KWSYS_SHARED_FORWARD_PATH_SEP, 0 -}; -static const char kwsys_shared_forward_path_slash[2] = { - KWSYS_SHARED_FORWARD_PATH_SLASH, 0 -}; - -/* The maximum length of a file name. */ -# if defined(PATH_MAX) -# define KWSYS_SHARED_FORWARD_MAXPATH PATH_MAX -# elif defined(MAXPATHLEN) -# define KWSYS_SHARED_FORWARD_MAXPATH MAXPATHLEN -# else -# define KWSYS_SHARED_FORWARD_MAXPATH 16384 -# endif - -/* Select the environment variable holding the shared library runtime - search path for this platform and build configuration. Also select - ldd command equivalent. */ - -/* Linux */ -# if defined(__linux) -# define KWSYS_SHARED_FORWARD_LDD "ldd" -# define KWSYS_SHARED_FORWARD_LDD_N 1 -# define KWSYS_SHARED_FORWARD_LDPATH "LD_LIBRARY_PATH" - -/* FreeBSD */ -# elif defined(__FreeBSD__) -# define KWSYS_SHARED_FORWARD_LDD "ldd" -# define KWSYS_SHARED_FORWARD_LDD_N 1 -# define KWSYS_SHARED_FORWARD_LDPATH "LD_LIBRARY_PATH" - -/* OpenBSD */ -# elif defined(__OpenBSD__) -# define KWSYS_SHARED_FORWARD_LDD "ldd" -# define KWSYS_SHARED_FORWARD_LDD_N 1 -# define KWSYS_SHARED_FORWARD_LDPATH "LD_LIBRARY_PATH" - -/* OS X */ -# elif defined(__APPLE__) -# define KWSYS_SHARED_FORWARD_LDD "otool", "-L" -# define KWSYS_SHARED_FORWARD_LDD_N 2 -# define KWSYS_SHARED_FORWARD_LDPATH "DYLD_LIBRARY_PATH" - -/* AIX */ -# elif defined(_AIX) -# define KWSYS_SHARED_FORWARD_LDD "dump", "-H" -# define KWSYS_SHARED_FORWARD_LDD_N 2 -# define KWSYS_SHARED_FORWARD_LDPATH "LIBPATH" - -/* SUN */ -# elif defined(__sun) -# define KWSYS_SHARED_FORWARD_LDD "ldd" -# define KWSYS_SHARED_FORWARD_LDD_N 1 -# include -# if defined(_ILP32) -# define KWSYS_SHARED_FORWARD_LDPATH "LD_LIBRARY_PATH" -# elif defined(_LP64) -# define KWSYS_SHARED_FORWARD_LDPATH "LD_LIBRARY_PATH_64" -# endif - -/* HP-UX */ -# elif defined(__hpux) -# define KWSYS_SHARED_FORWARD_LDD "chatr" -# define KWSYS_SHARED_FORWARD_LDD_N 1 -# if defined(__LP64__) -# define KWSYS_SHARED_FORWARD_LDPATH "LD_LIBRARY_PATH" -# else -# define KWSYS_SHARED_FORWARD_LDPATH "SHLIB_PATH" -# endif - -/* SGI MIPS */ -# elif defined(__sgi) && defined(_MIPS_SIM) -# define KWSYS_SHARED_FORWARD_LDD "ldd" -# define KWSYS_SHARED_FORWARD_LDD_N 1 -# if _MIPS_SIM == _ABIO32 -# define KWSYS_SHARED_FORWARD_LDPATH "LD_LIBRARY_PATH" -# elif _MIPS_SIM == _ABIN32 -# define KWSYS_SHARED_FORWARD_LDPATH "LD_LIBRARYN32_PATH" -# elif _MIPS_SIM == _ABI64 -# define KWSYS_SHARED_FORWARD_LDPATH "LD_LIBRARY64_PATH" -# endif - -/* Cygwin */ -# elif defined(__CYGWIN__) -# define KWSYS_SHARED_FORWARD_LDD \ - "cygcheck" /* TODO: cygwin 1.7 has ldd \ - */ -# define KWSYS_SHARED_FORWARD_LDD_N 1 -# define KWSYS_SHARED_FORWARD_LDPATH "PATH" - -/* Windows */ -# elif defined(_WIN32) -# define KWSYS_SHARED_FORWARD_LDPATH "PATH" - -/* Guess on this unknown system. */ -# else -# define KWSYS_SHARED_FORWARD_LDD "ldd" -# define KWSYS_SHARED_FORWARD_LDD_N 1 -# define KWSYS_SHARED_FORWARD_LDPATH "LD_LIBRARY_PATH" -# endif - -# ifdef KWSYS_SHARED_FORWARD_ESCAPE_ARGV -typedef struct kwsys_sf_arg_info_s -{ - const char* arg; - int size; - int quote; -} kwsys_sf_arg_info; - -static kwsys_sf_arg_info kwsys_sf_get_arg_info(const char* in) -{ - /* Initialize information. */ - kwsys_sf_arg_info info; - - /* String iterator. */ - const char* c; - - /* Keep track of how many backslashes have been encountered in a row. */ - int windows_backslashes = 0; - - /* Start with the length of the original argument, plus one for - either a terminating null or a separating space. */ - info.arg = in; - info.size = (int)strlen(in) + 1; - info.quote = 0; - - /* Scan the string for characters that require escaping or quoting. */ - for (c = in; *c; ++c) { - /* Check whether this character needs quotes. */ - if (strchr(" \t?'#&<>|^", *c)) { - info.quote = 1; - } - - /* On Windows only backslashes and double-quotes need escaping. */ - if (*c == '\\') { - /* Found a backslash. It may need to be escaped later. */ - ++windows_backslashes; - } else if (*c == '"') { - /* Found a double-quote. We need to escape it and all - immediately preceding backslashes. */ - info.size += windows_backslashes + 1; - windows_backslashes = 0; - } else { - /* Found another character. This eliminates the possibility - that any immediately preceding backslashes will be - escaped. */ - windows_backslashes = 0; - } - } - - /* Check whether the argument needs surrounding quotes. */ - if (info.quote) { - /* Surrounding quotes are needed. Allocate space for them. */ - info.size += 2; - - /* We must escape all ending backslashes when quoting on windows. */ - info.size += windows_backslashes; - } - - return info; -} - -static char* kwsys_sf_get_arg(kwsys_sf_arg_info info, char* out) -{ - /* String iterator. */ - const char* c; - - /* Keep track of how many backslashes have been encountered in a row. */ - int windows_backslashes = 0; - - /* Whether the argument must be quoted. */ - if (info.quote) { - /* Add the opening quote for this argument. */ - *out++ = '"'; - } - - /* Scan the string for characters that require escaping or quoting. */ - for (c = info.arg; *c; ++c) { - /* On Windows only backslashes and double-quotes need escaping. */ - if (*c == '\\') { - /* Found a backslash. It may need to be escaped later. */ - ++windows_backslashes; - } else if (*c == '"') { - /* Found a double-quote. Escape all immediately preceding - backslashes. */ - while (windows_backslashes > 0) { - --windows_backslashes; - *out++ = '\\'; - } - - /* Add the backslash to escape the double-quote. */ - *out++ = '\\'; - } else { - /* We encountered a normal character. This eliminates any - escaping needed for preceding backslashes. */ - windows_backslashes = 0; - } - - /* Store this character. */ - *out++ = *c; - } - - if (info.quote) { - /* Add enough backslashes to escape any trailing ones. */ - while (windows_backslashes > 0) { - --windows_backslashes; - *out++ = '\\'; - } - - /* Add the closing quote for this argument. */ - *out++ = '"'; - } - - /* Store a terminating null without incrementing. */ - *out = 0; - - return out; -} -# endif - -/* Function to convert a logical or relative path to a physical full path. */ -static int kwsys_shared_forward_realpath(const char* in_path, char* out_path) -{ -# if defined(_WIN32) && !defined(__CYGWIN__) - /* Implementation for Windows. */ - DWORD n = - GetFullPathNameA(in_path, KWSYS_SHARED_FORWARD_MAXPATH, out_path, 0); - return n > 0 && n <= KWSYS_SHARED_FORWARD_MAXPATH; -# else - /* Implementation for UNIX. */ - return realpath(in_path, out_path) != 0; -# endif -} - -static int kwsys_shared_forward_samepath(const char* file1, const char* file2) -{ -# if defined(_WIN32) - int result = 0; - HANDLE h1 = CreateFileA(file1, GENERIC_READ, FILE_SHARE_READ, NULL, - OPEN_EXISTING, FILE_FLAG_BACKUP_SEMANTICS, NULL); - HANDLE h2 = CreateFileA(file2, GENERIC_READ, FILE_SHARE_READ, NULL, - OPEN_EXISTING, FILE_FLAG_BACKUP_SEMANTICS, NULL); - if (h1 != INVALID_HANDLE_VALUE && h2 != INVALID_HANDLE_VALUE) { - BY_HANDLE_FILE_INFORMATION fi1; - BY_HANDLE_FILE_INFORMATION fi2; - GetFileInformationByHandle(h1, &fi1); - GetFileInformationByHandle(h2, &fi2); - result = (fi1.dwVolumeSerialNumber == fi2.dwVolumeSerialNumber && - fi1.nFileIndexHigh == fi2.nFileIndexHigh && - fi1.nFileIndexLow == fi2.nFileIndexLow); - } - CloseHandle(h1); - CloseHandle(h2); - return result; -# else - struct stat fs1, fs2; - return (stat(file1, &fs1) == 0 && stat(file2, &fs2) == 0 && - memcmp(&fs2.st_dev, &fs1.st_dev, sizeof(fs1.st_dev)) == 0 && - memcmp(&fs2.st_ino, &fs1.st_ino, sizeof(fs1.st_ino)) == 0 && - fs2.st_size == fs1.st_size); -# endif -} - -/* Function to report a system error message. */ -static void kwsys_shared_forward_strerror(char* message) -{ -# if defined(_WIN32) && !defined(__CYGWIN__) - /* Implementation for Windows. */ - DWORD original = GetLastError(); - DWORD length = - FormatMessageA(FORMAT_MESSAGE_FROM_SYSTEM | FORMAT_MESSAGE_IGNORE_INSERTS, - 0, original, MAKELANGID(LANG_NEUTRAL, SUBLANG_DEFAULT), - message, KWSYS_SHARED_FORWARD_MAXPATH, 0); - if (length < 1 || length > KWSYS_SHARED_FORWARD_MAXPATH) { - /* FormatMessage failed. Use a default message. */ - snprintf(message, KWSYS_SHARED_FORWARD_MAXPATH, - "Error 0x%lX (FormatMessage failed with error 0x%lX)", original, - GetLastError()); - } -# else - /* Implementation for UNIX. */ - strcpy(message, strerror(errno)); -# endif -} - -/* Functions to execute a child process. */ -static void kwsys_shared_forward_execvp(const char* cmd, - char const* const* argv) -{ -# ifdef KWSYS_SHARED_FORWARD_ESCAPE_ARGV - /* Count the number of arguments. */ - int argc = 0; - { - char const* const* argvc; - for (argvc = argv; *argvc; ++argvc, ++argc) { - } - } - - /* Create the escaped arguments. */ - { - char** nargv = (char**)malloc((argc + 1) * sizeof(char*)); - int i; - for (i = 0; i < argc; ++i) { - kwsys_sf_arg_info info = kwsys_sf_get_arg_info(argv[i]); - nargv[i] = (char*)malloc(info.size); - kwsys_sf_get_arg(info, nargv[i]); - } - nargv[argc] = 0; - - /* Replace the command line to be used. */ - argv = (char const* const*)nargv; - } -# endif - -/* Invoke the child process. */ -# if defined(_MSC_VER) - _execvp(cmd, argv); -# elif defined(__MINGW32__) && !defined(__MINGW64__) - execvp(cmd, argv); -# else - execvp(cmd, (char* const*)argv); -# endif -} - -/* Function to get the directory containing the given file or directory. */ -static void kwsys_shared_forward_dirname(const char* begin, char* result) -{ - /* Find the location of the last slash. */ - int last_slash_index = -1; - const char* end = begin + strlen(begin); - for (; begin <= end && last_slash_index < 0; --end) { - if (*end == '/' || *end == '\\') { - last_slash_index = (int)(end - begin); - } - } - - /* Handle each case of the index of the last slash. */ - if (last_slash_index < 0) { - /* No slashes. */ - strcpy(result, "."); - } else if (last_slash_index == 0) { - /* Only one leading slash. */ - strcpy(result, kwsys_shared_forward_path_slash); - } -# if defined(_WIN32) - else if (last_slash_index == 2 && begin[1] == ':') { - /* Only one leading drive letter and slash. */ - strncpy(result, begin, (size_t)last_slash_index); - result[last_slash_index] = KWSYS_SHARED_FORWARD_PATH_SLASH; - result[last_slash_index + 1] = 0; - } -# endif - else { - /* A non-leading slash. */ - strncpy(result, begin, (size_t)last_slash_index); - result[last_slash_index] = 0; - } -} - -/* Function to check if a file exists and is executable. */ -static int kwsys_shared_forward_is_executable(const char* f) -{ -# if defined(_MSC_VER) -# define KWSYS_SHARED_FORWARD_ACCESS _access -# else -# define KWSYS_SHARED_FORWARD_ACCESS access -# endif -# if defined(X_OK) -# define KWSYS_SHARED_FORWARD_ACCESS_OK X_OK -# else -# define KWSYS_SHARED_FORWARD_ACCESS_OK 04 -# endif - if (KWSYS_SHARED_FORWARD_ACCESS(f, KWSYS_SHARED_FORWARD_ACCESS_OK) == 0) { - return 1; - } else { - return 0; - } -} - -/* Function to locate the executable currently running. */ -static int kwsys_shared_forward_self_path(const char* argv0, char* result) -{ - /* Check whether argv0 has a slash. */ - int has_slash = 0; - const char* p = argv0; - for (; *p && !has_slash; ++p) { - if (*p == '/' || *p == '\\') { - has_slash = 1; - } - } - - if (has_slash) { - /* There is a slash. Use the dirname of the given location. */ - kwsys_shared_forward_dirname(argv0, result); - return 1; - } else { - /* There is no slash. Search the PATH for the executable. */ - const char* path = getenv("PATH"); - const char* begin = path; - const char* end = begin + (begin ? strlen(begin) : 0); - const char* first = begin; - while (first != end) { - /* Store the end of this path entry. */ - const char* last; - - /* Skip all path separators. */ - for (; *first && *first == KWSYS_SHARED_FORWARD_PATH_SEP; ++first) - ; - - /* Find the next separator. */ - for (last = first; *last && *last != KWSYS_SHARED_FORWARD_PATH_SEP; - ++last) - ; - - /* If we got a non-empty directory, look for the executable there. */ - if (first < last) { - /* Determine the length without trailing slash. */ - size_t length = (size_t)(last - first); - if (*(last - 1) == '/' || *(last - 1) == '\\') { - --length; - } - - /* Construct the name of the executable in this location. */ - strncpy(result, first, length); - result[length] = KWSYS_SHARED_FORWARD_PATH_SLASH; - strcpy(result + (length) + 1, argv0); - - /* Check if it exists and is executable. */ - if (kwsys_shared_forward_is_executable(result)) { - /* Found it. */ - result[length] = 0; - return 1; - } - } - - /* Move to the next directory in the path. */ - first = last; - } - } - - /* We could not find the executable. */ - return 0; -} - -/* Function to convert a specified path to a full path. If it is not - already full, it is taken relative to the self path. */ -static int kwsys_shared_forward_fullpath(const char* self_path, - const char* in_path, char* result, - const char* desc) -{ - /* Check the specified path type. */ - if (in_path[0] == '/') { - /* Already a full path. */ - strcpy(result, in_path); - } -# if defined(_WIN32) - else if (in_path[0] && in_path[1] == ':') { - /* Already a full path. */ - strcpy(result, in_path); - } -# endif - else { - /* Relative to self path. */ - char temp_path[KWSYS_SHARED_FORWARD_MAXPATH]; - strcpy(temp_path, self_path); - strcat(temp_path, kwsys_shared_forward_path_slash); - strcat(temp_path, in_path); - if (!kwsys_shared_forward_realpath(temp_path, result)) { - if (desc) { - char msgbuf[KWSYS_SHARED_FORWARD_MAXPATH]; - kwsys_shared_forward_strerror(msgbuf); - fprintf(stderr, "Error converting %s \"%s\" to real path: %s\n", desc, - temp_path, msgbuf); - } - return 0; - } - } - return 1; -} - -/* Function to compute the library search path and executable name - based on the self path. */ -static int kwsys_shared_forward_get_settings(const char* self_path, - char* ldpath, char* exe) -{ - /* Possible search paths. */ - static const char* search_path_build[] = { KWSYS_SHARED_FORWARD_PATH_BUILD, - 0 }; - static const char* search_path_install[] = { - KWSYS_SHARED_FORWARD_PATH_INSTALL, 0 - }; - - /* Chosen paths. */ - const char** search_path; - const char* exe_path; - -/* Get the real name of the build and self paths. */ -# if defined(KWSYS_SHARED_FORWARD_CONFIG_NAME) - char build_path[] = - KWSYS_SHARED_FORWARD_DIR_BUILD "/" KWSYS_SHARED_FORWARD_CONFIG_NAME; - char self_path_logical[KWSYS_SHARED_FORWARD_MAXPATH]; -# else - char build_path[] = KWSYS_SHARED_FORWARD_DIR_BUILD; - const char* self_path_logical = self_path; -# endif - char build_path_real[KWSYS_SHARED_FORWARD_MAXPATH]; - char self_path_real[KWSYS_SHARED_FORWARD_MAXPATH]; - if (!kwsys_shared_forward_realpath(self_path, self_path_real)) { - char msgbuf[KWSYS_SHARED_FORWARD_MAXPATH]; - kwsys_shared_forward_strerror(msgbuf); - fprintf(stderr, "Error converting self path \"%s\" to real path: %s\n", - self_path, msgbuf); - return 0; - } - - /* Check whether we are running in the build tree or an install tree. */ - if (kwsys_shared_forward_realpath(build_path, build_path_real) && - kwsys_shared_forward_samepath(self_path_real, build_path_real)) { - /* Running in build tree. Use the build path and exe. */ - search_path = search_path_build; -# if defined(_WIN32) - exe_path = KWSYS_SHARED_FORWARD_EXE_BUILD ".exe"; -# else - exe_path = KWSYS_SHARED_FORWARD_EXE_BUILD; -# endif - -# if defined(KWSYS_SHARED_FORWARD_CONFIG_NAME) - /* Remove the configuration directory from self_path. */ - kwsys_shared_forward_dirname(self_path, self_path_logical); -# endif - } else { - /* Running in install tree. Use the install path and exe. */ - search_path = search_path_install; -# if defined(_WIN32) - exe_path = KWSYS_SHARED_FORWARD_EXE_INSTALL ".exe"; -# else - exe_path = KWSYS_SHARED_FORWARD_EXE_INSTALL; -# endif - -# if defined(KWSYS_SHARED_FORWARD_CONFIG_NAME) - /* Use the original self path directory. */ - strcpy(self_path_logical, self_path); -# endif - } - - /* Construct the runtime search path. */ - { - const char** dir; - for (dir = search_path; *dir; ++dir) { - /* Add separator between path components. */ - if (dir != search_path) { - strcat(ldpath, kwsys_shared_forward_path_sep); - } - - /* Add this path component. */ - if (!kwsys_shared_forward_fullpath(self_path_logical, *dir, - ldpath + strlen(ldpath), - "runtime path entry")) { - return 0; - } - } - } - - /* Construct the executable location. */ - if (!kwsys_shared_forward_fullpath(self_path_logical, exe_path, exe, - "executable file")) { - return 0; - } - return 1; -} - -/* Function to print why execution of a command line failed. */ -static void kwsys_shared_forward_print_failure(char const* const* argv) -{ - char msg[KWSYS_SHARED_FORWARD_MAXPATH]; - char const* const* arg = argv; - kwsys_shared_forward_strerror(msg); - fprintf(stderr, "Error running"); - for (; *arg; ++arg) { - fprintf(stderr, " \"%s\"", *arg); - } - fprintf(stderr, ": %s\n", msg); -} - -/* Static storage space to store the updated environment variable. */ -static char kwsys_shared_forward_ldpath[65535] = - KWSYS_SHARED_FORWARD_LDPATH "="; - -/* Main driver function to be called from main. */ -static int @KWSYS_NAMESPACE@_shared_forward_to_real(int argc, char** argv_in) -{ - char const** argv = (char const**)argv_in; - /* Get the directory containing this executable. */ - char self_path[KWSYS_SHARED_FORWARD_MAXPATH]; - if (kwsys_shared_forward_self_path(argv[0], self_path)) { - /* Found this executable. Use it to get the library directory. */ - char exe[KWSYS_SHARED_FORWARD_MAXPATH]; - if (kwsys_shared_forward_get_settings(self_path, - kwsys_shared_forward_ldpath, exe)) { - /* Append the old runtime search path. */ - const char* old_ldpath = getenv(KWSYS_SHARED_FORWARD_LDPATH); - if (old_ldpath) { - strcat(kwsys_shared_forward_ldpath, kwsys_shared_forward_path_sep); - strcat(kwsys_shared_forward_ldpath, old_ldpath); - } - - /* Store the environment variable. */ - putenv(kwsys_shared_forward_ldpath); - -# if defined(KWSYS_SHARED_FORWARD_OPTION_COMMAND) - /* Look for the command line replacement option. */ - if (argc > 1 && - strcmp(argv[1], KWSYS_SHARED_FORWARD_OPTION_COMMAND) == 0) { - if (argc > 2) { - /* Use the command line given. */ - strcpy(exe, argv[2]); - argv += 2; - argc -= 2; - } else { - /* The option was not given an executable. */ - fprintf(stderr, - "Option " KWSYS_SHARED_FORWARD_OPTION_COMMAND - " must be followed by a command line.\n"); - return 1; - } - } -# endif - -# if defined(KWSYS_SHARED_FORWARD_OPTION_PRINT) - /* Look for the print command line option. */ - if (argc > 1 && - strcmp(argv[1], KWSYS_SHARED_FORWARD_OPTION_PRINT) == 0) { - fprintf(stdout, "%s\n", kwsys_shared_forward_ldpath); - fprintf(stdout, "%s\n", exe); - return 0; - } -# endif - -# if defined(KWSYS_SHARED_FORWARD_OPTION_LDD) - /* Look for the ldd command line option. */ - if (argc > 1 && strcmp(argv[1], KWSYS_SHARED_FORWARD_OPTION_LDD) == 0) { -# if defined(KWSYS_SHARED_FORWARD_LDD) - /* Use the named ldd-like executable and arguments. */ - char const* ldd_argv[] = { KWSYS_SHARED_FORWARD_LDD, 0, 0 }; - ldd_argv[KWSYS_SHARED_FORWARD_LDD_N] = exe; - kwsys_shared_forward_execvp(ldd_argv[0], ldd_argv); - - /* Report why execution failed. */ - kwsys_shared_forward_print_failure(ldd_argv); - return 1; -# else - /* We have no ldd-like executable available on this platform. */ - fprintf(stderr, "No ldd-like tool is known to this executable.\n"); - return 1; -# endif - } -# endif - - /* Replace this process with the real executable. */ - argv[0] = exe; - kwsys_shared_forward_execvp(argv[0], argv); - - /* Report why execution failed. */ - kwsys_shared_forward_print_failure(argv); - } else { - /* Could not convert self path to the library directory. */ - } - } else { - /* Could not find this executable. */ - fprintf(stderr, "Error locating executable \"%s\".\n", argv[0]); - } - - /* Avoid unused argument warning. */ - (void)argc; - - /* Exit with failure. */ - return 1; -} - -/* Restore warning stack. */ -# if defined(__clang__) && defined(__has_warning) -# if __has_warning("-Wcast-qual") -# pragma clang diagnostic pop -# endif -# endif - -#else -# error "@KWSYS_NAMESPACE@/SharedForward.h should be included only once." -#endif diff --git a/Status.hxx.in b/Status.hxx.in index 16efaefdf3..7cef029bbb 100644 --- a/Status.hxx.in +++ b/Status.hxx.in @@ -7,6 +7,16 @@ #include +/* + * Detect a symbol collision with the name of this class. X11 headers use + * `#define Status int` instead of using `typedef` which poisons any other + * usage of this name. + */ +#if defined(Status) && defined(_X11_XLIB_H_) +# error \ + "Status.hxx must be included *before* any X11 headers to avoid a collision with the `Status` define that is made in its API." +#endif + namespace @KWSYS_NAMESPACE@ { /** \class Status diff --git a/String.hxx.in b/String.hxx.in deleted file mode 100644 index c36f4ce4a9..0000000000 --- a/String.hxx.in +++ /dev/null @@ -1,57 +0,0 @@ -/* Distributed under the OSI-approved BSD 3-Clause License. See accompanying - file Copyright.txt or https://cmake.org/licensing#kwsys for details. */ -#ifndef @KWSYS_NAMESPACE@_String_hxx -#define @KWSYS_NAMESPACE@_String_hxx - -#include - -namespace @KWSYS_NAMESPACE@ { - -/** \class String - * \brief Short-name version of the STL basic_string class template. - * - * The standard library "string" type is actually a typedef for - * "basic_string<..long argument list..>". This string class is - * simply a subclass of this type with the same interface so that the - * name is shorter in debugging symbols and error messages. - */ -class String : public std::string -{ - /** The original string type. */ - typedef std::string stl_string; - -public: - /** String member types. */ - typedef stl_string::value_type value_type; - typedef stl_string::pointer pointer; - typedef stl_string::reference reference; - typedef stl_string::const_reference const_reference; - typedef stl_string::size_type size_type; - typedef stl_string::difference_type difference_type; - typedef stl_string::iterator iterator; - typedef stl_string::const_iterator const_iterator; - typedef stl_string::reverse_iterator reverse_iterator; - typedef stl_string::const_reverse_iterator const_reverse_iterator; - - /** String constructors. */ - String() - : stl_string() - { - } - String(const value_type* s) - : stl_string(s) - { - } - String(const value_type* s, size_type n) - : stl_string(s, n) - { - } - String(const stl_string& s, size_type pos = 0, size_type n = npos) - : stl_string(s, pos, n) - { - } -}; // End Class: String - -} // namespace @KWSYS_NAMESPACE@ - -#endif diff --git a/SystemInformation.cxx b/SystemInformation.cxx index e6cc48f280..7f8485e752 100644 --- a/SystemInformation.cxx +++ b/SystemInformation.cxx @@ -482,7 +482,7 @@ class SystemInformationImplementation unsigned int); // For windows // For Linux and Cygwin, /proc/cpuinfo formats are slightly different - bool RetreiveInformationFromCpuInfoFile(); + bool RetrieveInformationFromCpuInfoFile(); std::string ExtractValueFromCpuInfoFile(std::string buffer, const char* word, size_t init = 0); @@ -1520,7 +1520,7 @@ void SystemInformationImplementation::RunCPUCheck() #elif defined(__hpux) this->QueryHPUXProcessor(); #elif defined(__linux) || defined(__CYGWIN__) - this->RetreiveInformationFromCpuInfoFile(); + this->RetrieveInformationFromCpuInfoFile(); #else this->QueryProcessor(); #endif @@ -3435,7 +3435,7 @@ std::string SystemInformationImplementation::ExtractValueFromCpuInfoFile( } /** Query for the cpu status */ -bool SystemInformationImplementation::RetreiveInformationFromCpuInfoFile() +bool SystemInformationImplementation::RetrieveInformationFromCpuInfoFile() { this->NumberOfLogicalCPU = 0; this->NumberOfPhysicalCPU = 0; @@ -3453,6 +3453,10 @@ bool SystemInformationImplementation::RetreiveInformationFromCpuInfoFile() fileSize++; } fclose(fd); + if (fileSize < 2) { + std::cout << "No data in /proc/cpuinfo" << std::endl; + return false; + } buffer.resize(fileSize - 2); // Number of logical CPUs (combination of multiple processors, multi-core // and SMT) diff --git a/SystemTools.cxx b/SystemTools.cxx index c38b456441..3bb78696c2 100644 --- a/SystemTools.cxx +++ b/SystemTools.cxx @@ -36,6 +36,7 @@ #ifdef _WIN32 # include +# include #endif // Work-around CMake dependency scanning limitation. This must @@ -94,6 +95,13 @@ # include #endif +#if defined(__APPLE__) && \ + (__ENVIRONMENT_MAC_OS_X_VERSION_MIN_REQUIRED__ - 0 >= 101200) +# define KWSYS_SYSTEMTOOLS_HAVE_MACOS_COPYFILE_CLONE +# include +# include +#endif + // Windows API. #if defined(_WIN32) # include @@ -499,16 +507,39 @@ class kwsysEnvSet : public std::set }; #ifdef _WIN32 -struct SystemToolsPathCaseCmp +# if defined(_WIN64) +static constexpr size_t FNV_OFFSET_BASIS = 14695981039346656037ULL; +static constexpr size_t FNV_PRIME = 1099511628211ULL; +# else +static constexpr size_t FNV_OFFSET_BASIS = 2166136261U; +static constexpr size_t FNV_PRIME = 16777619U; +# endif + +// Case insensitive Fnv1a hash +struct SystemToolsPathCaseHash +{ + size_t operator()(std::string const& path) const + { + size_t hash = FNV_OFFSET_BASIS; + for (auto c : path) { + hash ^= static_cast(std::tolower(c)); + hash *= FNV_PRIME; + } + + return hash; + } +}; + +struct SystemToolsPathCaseEqual { bool operator()(std::string const& l, std::string const& r) const { # ifdef _MSC_VER - return _stricmp(l.c_str(), r.c_str()) < 0; + return _stricmp(l.c_str(), r.c_str()) == 0; # elif defined(__GNUC__) - return strcasecmp(l.c_str(), r.c_str()) < 0; + return strcasecmp(l.c_str(), r.c_str()) == 0; # else - return SystemTools::Strucmp(l.c_str(), r.c_str()) < 0; + return SystemTools::Strucmp(l.c_str(), r.c_str()) == 0; # endif } }; @@ -529,10 +560,16 @@ class SystemToolsStatic StringMap TranslationMap; #endif #ifdef _WIN32 - static std::string GetCasePathName(std::string const& pathIn); + static std::string GetCasePathName(std::string const& pathIn, + bool const cache); static std::string GetActualCaseForPathCached(std::string const& path); static const char* GetEnvBuffered(const char* key); - std::map PathCaseMap; + std::unordered_map + FindFileMap; + std::unordered_map + PathCaseMap; std::map EnvMap; #endif #ifdef __CYGWIN__ @@ -564,7 +601,8 @@ class SystemToolsStatic static SystemToolsStatic* SystemToolsStatics; #ifdef _WIN32 -std::string SystemToolsStatic::GetCasePathName(std::string const& pathIn) +std::string SystemToolsStatic::GetCasePathName(std::string const& pathIn, + bool const cache) { std::string casePath; @@ -616,14 +654,31 @@ std::string SystemToolsStatic::GetCasePathName(std::string const& pathIn) } else { std::string test_str = casePath; test_str += path_components[idx]; - WIN32_FIND_DATAW findData; - HANDLE hFind = - ::FindFirstFileW(Encoding::ToWide(test_str).c_str(), &findData); - if (INVALID_HANDLE_VALUE != hFind) { - path_components[idx] = Encoding::ToNarrow(findData.cFileName); - ::FindClose(hFind); - } else { - converting = false; + + bool found_in_cache = false; + if (cache) { + auto const it = SystemToolsStatics->FindFileMap.find(test_str); + if (it != SystemToolsStatics->FindFileMap.end()) { + path_components[idx] = it->second; + found_in_cache = true; + } + } + + if (!found_in_cache) { + WIN32_FIND_DATAW findData; + HANDLE hFind = + ::FindFirstFileW(Encoding::ToWide(test_str).c_str(), &findData); + if (INVALID_HANDLE_VALUE != hFind) { + auto case_file_name = Encoding::ToNarrow(findData.cFileName); + if (cache) { + SystemToolsStatics->FindFileMap.emplace(test_str, + case_file_name); + } + path_components[idx] = std::move(case_file_name); + ::FindClose(hFind); + } else { + converting = false; + } } } } @@ -635,19 +690,16 @@ std::string SystemToolsStatic::GetCasePathName(std::string const& pathIn) std::string SystemToolsStatic::GetActualCaseForPathCached(std::string const& p) { - // Check to see if actual case has already been called - // for this path, and the result is stored in the PathCaseMap - auto& pcm = SystemToolsStatics->PathCaseMap; - { - auto itr = pcm.find(p); - if (itr != pcm.end()) { - return itr->second; - } - } - std::string casePath = SystemToolsStatic::GetCasePathName(p); - if (casePath.size() <= MAX_PATH) { - pcm[p] = casePath; + std::string casePath; + + auto it = SystemToolsStatics->PathCaseMap.find(p); + if (it != SystemToolsStatics->PathCaseMap.end()) { + casePath = it->second; + } else { + casePath = SystemToolsStatic::GetCasePathName(p, true); + SystemToolsStatics->PathCaseMap.emplace(p, casePath); } + return casePath; } #endif @@ -2238,8 +2290,8 @@ static std::string FileInDir(const std::string& source, const std::string& dir) return new_destination + '/' + SystemTools::GetFilenameName(source); } -Status SystemTools::CopyFileIfDifferent(std::string const& source, - std::string const& destination) +SystemTools::CopyStatus SystemTools::CopyFileIfDifferent( + std::string const& source, std::string const& destination) { // special check for a destination that is a directory // FilesDiffer does not handle file to directory compare @@ -2256,7 +2308,7 @@ Status SystemTools::CopyFileIfDifferent(std::string const& source, } } // at this point the files must be the same so return true - return Status::Success(); + return CopyStatus{ Status::Success(), CopyStatus::NoPath }; } #define KWSYS_ST_BUFFER 4096 @@ -2382,13 +2434,13 @@ bool SystemTools::TextFilesDiffer(const std::string& path1, return false; } -Status SystemTools::CopyFileContentBlockwise(std::string const& source, - std::string const& destination) +SystemTools::CopyStatus SystemTools::CopyFileContentBlockwise( + std::string const& source, std::string const& destination) { // Open files kwsys::ifstream fin(source.c_str(), std::ios::in | std::ios::binary); if (!fin) { - return Status::POSIX_errno(); + return CopyStatus{ Status::POSIX_errno(), CopyStatus::SourcePath }; } // try and remove the destination file so that read only destination files @@ -2400,7 +2452,7 @@ Status SystemTools::CopyFileContentBlockwise(std::string const& source, kwsys::ofstream fout(destination.c_str(), std::ios::out | std::ios::trunc | std::ios::binary); if (!fout) { - return Status::POSIX_errno(); + return CopyStatus{ Status::POSIX_errno(), CopyStatus::DestPath }; } // This copy loop is very sensitive on certain platforms with @@ -2429,10 +2481,10 @@ Status SystemTools::CopyFileContentBlockwise(std::string const& source, fout.close(); if (!fout) { - return Status::POSIX_errno(); + return CopyStatus{ Status::POSIX_errno(), CopyStatus::DestPath }; } - return Status::Success(); + return CopyStatus{ Status::Success(), CopyStatus::NoPath }; } /** @@ -2447,13 +2499,13 @@ Status SystemTools::CopyFileContentBlockwise(std::string const& source, * - The underlying filesystem does not support file cloning * - An unspecified error occurred */ -Status SystemTools::CloneFileContent(std::string const& source, - std::string const& destination) +SystemTools::CopyStatus SystemTools::CloneFileContent( + std::string const& source, std::string const& destination) { #if defined(__linux) && defined(FICLONE) int in = open(source.c_str(), O_RDONLY); if (in < 0) { - return Status::POSIX_errno(); + return CopyStatus{ Status::POSIX_errno(), CopyStatus::SourcePath }; } SystemTools::RemoveFile(destination); @@ -2461,39 +2513,66 @@ Status SystemTools::CloneFileContent(std::string const& source, int out = open(destination.c_str(), O_WRONLY | O_CREAT | O_TRUNC, S_IRUSR | S_IWUSR); if (out < 0) { - Status status = Status::POSIX_errno(); + CopyStatus status{ Status::POSIX_errno(), CopyStatus::DestPath }; close(in); return status; } - Status status = Status::Success(); + CopyStatus status{ Status::Success(), CopyStatus::NoPath }; if (ioctl(out, FICLONE, in) < 0) { - status = Status::POSIX_errno(); + status = CopyStatus{ Status::POSIX_errno(), CopyStatus::NoPath }; } close(in); close(out); return status; +#elif defined(__APPLE__) && \ + defined(KWSYS_SYSTEMTOOLS_HAVE_MACOS_COPYFILE_CLONE) + // When running as root, copyfile() copies more metadata than we + // want, such as ownership. Pretend it is not available. + if (getuid() == 0) { + return CopyStatus{ Status::POSIX(ENOSYS), CopyStatus::NoPath }; + } + + // NOTE: we cannot use `clonefile` as the {a,c,m}time for the file needs to + // be updated by `copy_file_if_different` and `copy_file`. + if (copyfile(source.c_str(), destination.c_str(), nullptr, + COPYFILE_METADATA | COPYFILE_CLONE) < 0) { + return CopyStatus{ Status::POSIX_errno(), CopyStatus::NoPath }; + } +# if KWSYS_CXX_HAS_UTIMENSAT + // utimensat is only available on newer Unixes and macOS 10.13+ + if (utimensat(AT_FDCWD, destination.c_str(), nullptr, 0) < 0) { + return CopyStatus{ Status::POSIX_errno(), CopyStatus::DestPath }; + } +# else + // fall back to utimes + if (utimes(destination.c_str(), nullptr) < 0) { + return CopyStatus{ Status::POSIX_errno(), CopyStatus::DestPath }; + } +# endif + return CopyStatus{ Status::Success(), CopyStatus::NoPath }; #else (void)source; (void)destination; - return Status::POSIX(ENOSYS); + return CopyStatus{ Status::POSIX(ENOSYS), CopyStatus::NoPath }; #endif } /** * Copy a file named by "source" to the file named by "destination". */ -Status SystemTools::CopyFileAlways(std::string const& source, - std::string const& destination) +SystemTools::CopyStatus SystemTools::CopyFileAlways( + std::string const& source, std::string const& destination) { - Status status; + CopyStatus status; mode_t perm = 0; Status perms = SystemTools::GetPermissions(source, perm); std::string real_destination = destination; if (SystemTools::FileIsDirectory(source)) { - status = SystemTools::MakeDirectory(destination); + status = CopyStatus{ SystemTools::MakeDirectory(destination), + CopyStatus::DestPath }; if (!status.IsSuccess()) { return status; } @@ -2518,7 +2597,8 @@ Status SystemTools::CopyFileAlways(std::string const& source, // Create destination directory if (!destination_dir.empty()) { - status = SystemTools::MakeDirectory(destination_dir); + status = CopyStatus{ SystemTools::MakeDirectory(destination_dir), + CopyStatus::DestPath }; if (!status.IsSuccess()) { return status; } @@ -2534,13 +2614,15 @@ Status SystemTools::CopyFileAlways(std::string const& source, } } if (perms) { - status = SystemTools::SetPermissions(real_destination, perm); + status = CopyStatus{ SystemTools::SetPermissions(real_destination, perm), + CopyStatus::DestPath }; } return status; } -Status SystemTools::CopyAFile(std::string const& source, - std::string const& destination, bool always) +SystemTools::CopyStatus SystemTools::CopyAFile(std::string const& source, + std::string const& destination, + bool always) { if (always) { return SystemTools::CopyFileAlways(source, destination); @@ -3040,17 +3122,14 @@ std::string SystemTools::GetRealPath(const std::string& path, return ret; } -bool SystemTools::FileIsDirectory(const std::string& inName) +// Remove any trailing slash from the name except in a root component. +static const char* RemoveTrailingSlashes( + const std::string& inName, char (&local_buffer)[KWSYS_SYSTEMTOOLS_MAXPATH], + std::string& string_buffer) { - if (inName.empty()) { - return false; - } size_t length = inName.size(); const char* name = inName.c_str(); - // Remove any trailing slash from the name except in a root component. - char local_buffer[KWSYS_SYSTEMTOOLS_MAXPATH]; - std::string string_buffer; size_t last = length - 1; if (last > 0 && (name[last] == '/' || name[last] == '\\') && strcmp(name, "/") != 0 && name[last - 1] != ':') { @@ -3064,6 +3143,19 @@ bool SystemTools::FileIsDirectory(const std::string& inName) } } + return name; +} + +bool SystemTools::FileIsDirectory(const std::string& inName) +{ + if (inName.empty()) { + return false; + } + + char local_buffer[KWSYS_SYSTEMTOOLS_MAXPATH]; + std::string string_buffer; + const auto name = RemoveTrailingSlashes(inName, local_buffer, string_buffer); + // Now check the file node type. #if defined(_WIN32) DWORD attr = @@ -3080,9 +3172,21 @@ bool SystemTools::FileIsDirectory(const std::string& inName) } } -bool SystemTools::FileIsExecutable(const std::string& name) +bool SystemTools::FileIsExecutable(const std::string& inName) { - return !FileIsDirectory(name) && TestFileAccess(name, TEST_FILE_EXECUTE); +#ifdef _WIN32 + char local_buffer[KWSYS_SYSTEMTOOLS_MAXPATH]; + std::string string_buffer; + const auto name = RemoveTrailingSlashes(inName, local_buffer, string_buffer); + const auto attr = + GetFileAttributesW(Encoding::ToWindowsExtendedPath(name).c_str()); + + // On Windows any file that exists and is not a directory is considered + // readable and therefore also executable: + return attr != INVALID_FILE_ATTRIBUTES && !(attr & FILE_ATTRIBUTE_DIRECTORY); +#else + return !FileIsDirectory(inName) && TestFileAccess(inName, TEST_FILE_EXECUTE); +#endif } #if defined(_WIN32) @@ -3320,44 +3424,17 @@ bool SystemTools::SplitProgramPath(const std::string& in_name, } bool SystemTools::FindProgramPath(const char* argv0, std::string& pathOut, - std::string& errorMsg, const char* exeName, - const char* buildDir, - const char* installPrefix) + std::string& errorMsg) { std::vector failures; std::string self = argv0 ? argv0 : ""; failures.push_back(self); SystemTools::ConvertToUnixSlashes(self); self = SystemTools::FindProgram(self); - if (!SystemTools::FileIsExecutable(self)) { - if (buildDir) { - std::string intdir = "."; -#ifdef CMAKE_INTDIR - intdir = CMAKE_INTDIR; -#endif - self = buildDir; - self += "/bin/"; - self += intdir; - self += "/"; - self += exeName; - self += SystemTools::GetExecutableExtension(); - } - } - if (installPrefix) { - if (!SystemTools::FileIsExecutable(self)) { - failures.push_back(self); - self = installPrefix; - self += "/bin/"; - self += exeName; - } - } if (!SystemTools::FileIsExecutable(self)) { failures.push_back(self); std::ostringstream msg; msg << "Can not find the command line program "; - if (exeName) { - msg << exeName; - } msg << "\n"; if (argv0) { msg << " argv[0] = \"" << argv0 << "\"\n"; @@ -3628,7 +3705,7 @@ std::string SystemTools::RelativePath(const std::string& local, std::string SystemTools::GetActualCaseForPath(const std::string& p) { #ifdef _WIN32 - return SystemToolsStatic::GetCasePathName(p); + return SystemToolsStatic::GetCasePathName(p, false); #else return p; #endif diff --git a/SystemTools.hxx.in b/SystemTools.hxx.in index acce01570d..729928e6f3 100644 --- a/SystemTools.hxx.in +++ b/SystemTools.hxx.in @@ -395,10 +395,7 @@ public: * installPrefix is a possibly null pointer to the install directory. */ static bool FindProgramPath(const char* argv0, std::string& pathOut, - std::string& errorMsg, - const char* exeName = nullptr, - const char* buildDir = nullptr, - const char* installPrefix = nullptr); + std::string& errorMsg); /** * Given a path to a file or directory, convert it to a full path. @@ -565,12 +562,35 @@ public: static Status MakeDirectory(std::string const& path, const mode_t* mode = nullptr); + /** + * Represent the result of a file copy operation. + * This is the result 'Status' and, if the operation failed, + * an indication of whether the error occurred on the source + * or destination path. + */ + struct CopyStatus : public Status + { + enum WhichPath + { + NoPath, + SourcePath, + DestPath, + }; + CopyStatus() = default; + CopyStatus(Status s, WhichPath p) + : Status(s) + , Path(p) + { + } + WhichPath Path = NoPath; + }; + /** * Copy the source file to the destination file only * if the two files differ. */ - static Status CopyFileIfDifferent(std::string const& source, - std::string const& destination); + static CopyStatus CopyFileIfDifferent(std::string const& source, + std::string const& destination); /** * Compare the contents of two files. Return true if different @@ -588,13 +608,13 @@ public: /** * Blockwise copy source to destination file */ - static Status CopyFileContentBlockwise(std::string const& source, - std::string const& destination); + static CopyStatus CopyFileContentBlockwise(std::string const& source, + std::string const& destination); /** * Clone the source file to the destination file */ - static Status CloneFileContent(std::string const& source, - std::string const& destination); + static CopyStatus CloneFileContent(std::string const& source, + std::string const& destination); /** * Return true if the two files are the same file @@ -604,16 +624,17 @@ public: /** * Copy a file. */ - static Status CopyFileAlways(std::string const& source, - std::string const& destination); + static CopyStatus CopyFileAlways(std::string const& source, + std::string const& destination); /** * Copy a file. If the "always" argument is true the file is always * copied. If it is false, the file is copied only if it is new or * has changed. */ - static Status CopyAFile(std::string const& source, - std::string const& destination, bool always = true); + static CopyStatus CopyAFile(std::string const& source, + std::string const& destination, + bool always = true); /** * Copy content directory to another directory with all files and diff --git a/Terminal.c b/Terminal.c index 20bb5fe6d0..39081a7527 100644 --- a/Terminal.c +++ b/Terminal.c @@ -1,5 +1,9 @@ /* Distributed under the OSI-approved BSD 3-Clause License. See accompanying file Copyright.txt or https://cmake.org/licensing#kwsys for details. */ +#if !defined(_WIN32) && !defined(__APPLE__) && !defined(__OpenBSD__) +/* NOLINTNEXTLINE(bugprone-reserved-identifier) */ +# define _XOPEN_SOURCE 600 +#endif #include "kwsysPrivate.h" #include KWSYS_HEADER(Terminal.h) diff --git a/kwsysPlatformTests.cmake b/kwsysPlatformTests.cmake index 89be4b8853..6c006bcd1a 100644 --- a/kwsysPlatformTests.cmake +++ b/kwsysPlatformTests.cmake @@ -8,9 +8,6 @@ macro(KWSYS_PLATFORM_TEST lang var description invert) if(NOT DEFINED ${var}_COMPILED) message(STATUS "${description}") set(maybe_cxx_standard "") - if(CMAKE_VERSION VERSION_LESS 3.8 AND CMAKE_CXX_STANDARD) - set(maybe_cxx_standard "-DCMAKE_CXX_STANDARD=${CMAKE_CXX_STANDARD}") - endif() try_compile(${var}_COMPILED ${CMAKE_CURRENT_BINARY_DIR} ${CMAKE_CURRENT_SOURCE_DIR}/${KWSYS_PLATFORM_TEST_FILE_${lang}} @@ -18,14 +15,16 @@ macro(KWSYS_PLATFORM_TEST lang var description invert) CMAKE_FLAGS "-DLINK_LIBRARIES:STRING=${KWSYS_PLATFORM_TEST_LINK_LIBRARIES}" ${maybe_cxx_standard} OUTPUT_VARIABLE OUTPUT) - if(${var}_COMPILED) - file(APPEND - ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log - "${description} compiled with the following output:\n${OUTPUT}\n\n") - else() - file(APPEND - ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log - "${description} failed to compile with the following output:\n${OUTPUT}\n\n") + if(CMAKE_VERSION VERSION_LESS 3.26) + if(${var}_COMPILED) + file(APPEND + ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log + "${description} compiled with the following output:\n${OUTPUT}\n\n") + else() + file(APPEND + ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log + "${description} failed to compile with the following output:\n${OUTPUT}\n\n") + endif() endif() if(${invert} MATCHES INVERT) if(${var}_COMPILED) @@ -67,19 +66,23 @@ macro(KWSYS_PLATFORM_TEST_RUN lang var description invert) # Note that ${var} will be a 0 return value on success. if(${var}_COMPILED) - if(${var}) + if(CMAKE_VERSION VERSION_LESS 3.26) + if(${var}) + file(APPEND + ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log + "${description} compiled but failed to run with the following output:\n${OUTPUT}\n\n") + else() + file(APPEND + ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log + "${description} compiled and ran with the following output:\n${OUTPUT}\n\n") + endif() + endif() + else() + if(CMAKE_VERSION VERSION_LESS 3.26) file(APPEND ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log - "${description} compiled but failed to run with the following output:\n${OUTPUT}\n\n") - else() - file(APPEND - ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log - "${description} compiled and ran with the following output:\n${OUTPUT}\n\n") + "${description} failed to compile with the following output:\n${OUTPUT}\n\n") endif() - else() - file(APPEND - ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log - "${description} failed to compile with the following output:\n${OUTPUT}\n\n") set(${var} -1 CACHE INTERNAL "${description} failed to compile.") endif() @@ -188,14 +191,16 @@ macro(KWSYS_PLATFORM_INFO_TEST lang var description) OUTPUT_VARIABLE OUTPUT COPY_FILE ${KWSYS_PLATFORM_INFO_FILE} ) - if(${var}_COMPILED) - file(APPEND - ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log - "${description} compiled with the following output:\n${OUTPUT}\n\n") - else() - file(APPEND - ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log - "${description} failed to compile with the following output:\n${OUTPUT}\n\n") + if(CMAKE_VERSION VERSION_LESS 3.26) + if(${var}_COMPILED) + file(APPEND + ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeOutput.log + "${description} compiled with the following output:\n${OUTPUT}\n\n") + else() + file(APPEND + ${CMAKE_BINARY_DIR}${CMAKE_FILES_DIRECTORY}/CMakeError.log + "${description} failed to compile with the following output:\n${OUTPUT}\n\n") + endif() endif() if(${var}_COMPILED) message(STATUS "${description} - compiled") diff --git a/kwsysPrivate.h b/kwsysPrivate.h index dd9c1277fb..2f5c2faea9 100644 --- a/kwsysPrivate.h +++ b/kwsysPrivate.h @@ -27,7 +27,7 @@ */ # define KWSYS_NAMESPACE_STRING KWSYS_NAMESPACE_STRING0(KWSYS_NAMESPACE) # define KWSYS_NAMESPACE_STRING0(x) KWSYS_NAMESPACE_STRING1(x) -# define KWSYS_NAMESPACE_STRING1(x) # x +# define KWSYS_NAMESPACE_STRING1(x) #x #else # error "kwsysPrivate.h included multiple times." diff --git a/testConfigure.cxx b/testConfigure.cxx index a3c2ed3aed..4a34e1cbc7 100644 --- a/testConfigure.cxx +++ b/testConfigure.cxx @@ -22,7 +22,7 @@ static bool testFallthrough(int n) return r == 2; } -int testConfigure(int, char* []) +int testConfigure(int, char*[]) { bool res = true; res = testFallthrough(1) && res; diff --git a/testConsoleBuf.cxx b/testConsoleBuf.cxx index 4b7ddf053f..f9b826d215 100644 --- a/testConsoleBuf.cxx +++ b/testConsoleBuf.cxx @@ -743,7 +743,7 @@ static int testConsole() #endif -int testConsoleBuf(int, char* []) +int testConsoleBuf(int, char*[]) { int ret = 0; diff --git a/testDirectory.cxx b/testDirectory.cxx index 79bdc986b0..8c73af2ae0 100644 --- a/testDirectory.cxx +++ b/testDirectory.cxx @@ -19,7 +19,7 @@ file Copyright.txt or https://cmake.org/licensing#kwsys for details. */ #include -static int _doLongPathTest() +static int doLongPathTest() { using namespace kwsys; static const int LONG_PATH_THRESHOLD = 512; @@ -77,7 +77,7 @@ static int _doLongPathTest() return res; } -static int _nonExistentDirectoryTest() +static int nonExistentDirectoryTest() { using namespace kwsys; int res = 0; @@ -105,7 +105,7 @@ static int _nonExistentDirectoryTest() return res; } -static int _copyDirectoryTest() +static int copyDirectoryTest() { using namespace kwsys; const std::string source(TEST_SYSTEMTOOLS_BINARY_DIR @@ -136,8 +136,7 @@ static int _copyDirectoryTest() return 0; } -int testDirectory(int, char* []) +int testDirectory(int, char*[]) { - return _doLongPathTest() + _nonExistentDirectoryTest() + - _copyDirectoryTest(); + return doLongPathTest() + nonExistentDirectoryTest() + copyDirectoryTest(); } diff --git a/testDynamicLoader.cxx b/testDynamicLoader.cxx index 806c01a0cf..a5095a5fc7 100644 --- a/testDynamicLoader.cxx +++ b/testDynamicLoader.cxx @@ -53,9 +53,9 @@ static std::string GetLibName(const char* lname, const char* subdir = nullptr) slname += "/"; slname += subdir; } -#ifdef CMAKE_INTDIR +#ifdef BUILD_CONFIG slname += "/"; - slname += CMAKE_INTDIR; + slname += BUILD_CONFIG; #endif slname += "/"; slname += kwsys::DynamicLoader::LibPrefix(); diff --git a/testEncoding.cxx b/testEncoding.cxx index 1d605cb694..3acb6c8957 100644 --- a/testEncoding.cxx +++ b/testEncoding.cxx @@ -266,7 +266,7 @@ static int testToWindowsExtendedPath() #endif } -int testEncoding(int, char* []) +int testEncoding(int, char*[]) { const char* loc = setlocale(LC_ALL, ""); if (loc) { diff --git a/testFStream.cxx b/testFStream.cxx index 3325e2046e..9897a5870e 100644 --- a/testFStream.cxx +++ b/testFStream.cxx @@ -136,7 +136,7 @@ static int testBOMIO() return 0; } -int testFStream(int, char* []) +int testFStream(int, char*[]) { int ret = 0; diff --git a/testProcess.c b/testProcess.c index eed770cd85..fcc31daf20 100644 --- a/testProcess.c +++ b/testProcess.c @@ -1,5 +1,9 @@ /* Distributed under the OSI-approved BSD 3-Clause License. See accompanying file Copyright.txt or https://cmake.org/licensing#kwsys for details. */ +#if !defined(_WIN32) && !defined(__APPLE__) && !defined(__OpenBSD__) +/* NOLINTNEXTLINE(bugprone-reserved-identifier) */ +# define _XOPEN_SOURCE 600 +#endif #include "kwsysPrivate.h" #include KWSYS_HEADER(Process.h) #include KWSYS_HEADER(Encoding.h) diff --git a/testSharedForward.c.in b/testSharedForward.c.in deleted file mode 100644 index b3eb413828..0000000000 --- a/testSharedForward.c.in +++ /dev/null @@ -1,27 +0,0 @@ -/* Distributed under the OSI-approved BSD 3-Clause License. See accompanying - file Copyright.txt or https://cmake.org/licensing#kwsys for details. */ -#if defined(CMAKE_INTDIR) -# define CONFIG_DIR_PRE CMAKE_INTDIR "/" -# define CONFIG_DIR_POST "/" CMAKE_INTDIR -#else -# define CONFIG_DIR_PRE "" -# define CONFIG_DIR_POST "" -#endif -#define @KWSYS_NAMESPACE@_SHARED_FORWARD_DIR_BUILD "@EXEC_DIR@" -#define @KWSYS_NAMESPACE@_SHARED_FORWARD_PATH_BUILD "." CONFIG_DIR_POST -#define @KWSYS_NAMESPACE@_SHARED_FORWARD_PATH_INSTALL 0 -#define @KWSYS_NAMESPACE@_SHARED_FORWARD_EXE_BUILD \ - CONFIG_DIR_PRE "@KWSYS_NAMESPACE@TestProcess" -#define @KWSYS_NAMESPACE@_SHARED_FORWARD_EXE_INSTALL \ - "@KWSYS_NAMESPACE@TestProcess" -#define @KWSYS_NAMESPACE@_SHARED_FORWARD_OPTION_COMMAND "--command" -#define @KWSYS_NAMESPACE@_SHARED_FORWARD_OPTION_PRINT "--print" -#define @KWSYS_NAMESPACE@_SHARED_FORWARD_OPTION_LDD "--ldd" -#if defined(CMAKE_INTDIR) -# define @KWSYS_NAMESPACE@_SHARED_FORWARD_CONFIG_NAME CMAKE_INTDIR -#endif -#include <@KWSYS_NAMESPACE@/SharedForward.h> -int main(int argc, char** argv) -{ - return @KWSYS_NAMESPACE@_shared_forward_to_real(argc, argv); -} diff --git a/testStatus.cxx b/testStatus.cxx index 0a767a8547..9cadada33f 100644 --- a/testStatus.cxx +++ b/testStatus.cxx @@ -16,7 +16,7 @@ file Copyright.txt or https://cmake.org/licensing#kwsys for details. */ # include #endif -int testStatus(int, char* []) +int testStatus(int, char*[]) { bool res = true; { diff --git a/testSystemInformation.cxx b/testSystemInformation.cxx index 4f0c522e4f..7ae94ff699 100644 --- a/testSystemInformation.cxx +++ b/testSystemInformation.cxx @@ -19,7 +19,7 @@ #define printMethod3(info, m, unit) \ std::cout << #m << ": " << info.m << " " << unit << "\n" -int testSystemInformation(int, char* []) +int testSystemInformation(int, char*[]) { std::cout << "CTEST_FULL_OUTPUT\n"; // avoid truncation diff --git a/testSystemTools.cxx b/testSystemTools.cxx index 487da8d674..8afcb68273 100644 --- a/testSystemTools.cxx +++ b/testSystemTools.cxx @@ -1209,7 +1209,7 @@ static bool CheckSplitString() return ret; } -int testSystemTools(int, char* []) +int testSystemTools(int, char*[]) { bool res = true; From c8e69164101cd57a4a0cb39519eb48be14adf2ca Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Wed, 16 Aug 2023 20:21:04 -0400 Subject: [PATCH 099/183] removed kwsys gitattributes --- thirdparty/KWSys/adios2sys/.gitattributes | 25 ----------------------- 1 file changed, 25 deletions(-) delete mode 100644 thirdparty/KWSys/adios2sys/.gitattributes diff --git a/thirdparty/KWSys/adios2sys/.gitattributes b/thirdparty/KWSys/adios2sys/.gitattributes deleted file mode 100644 index 1ae02445f1..0000000000 --- a/thirdparty/KWSys/adios2sys/.gitattributes +++ /dev/null @@ -1,25 +0,0 @@ -.git* export-ignore -# import off -.gitattributes -export-ignore -.hooks* export-ignore - -# Custom attribute to mark sources as using the kwsys C code style. -[attr]kwsys-c-style whitespace=tab-in-indent format.clang-format=15 - -/GitSetup export-ignore -/*.sh export-ignore eol=lf -/*.bash export-ignore eol=lf -/.clang-format export-ignore -# import on - -*.c kwsys-c-style -*.c.in kwsys-c-style -*.cxx kwsys-c-style -*.h kwsys-c-style -*.h.in kwsys-c-style -*.hxx kwsys-c-style -*.hxx.in kwsys-c-style - -*.cmake whitespace=tab-in-indent -*.rst whitespace=tab-in-indent conflict-marker-size=79 -*.txt whitespace=tab-in-indent From 91a33c65bbc40b3c5f272c4074b30d1ca4a307ff Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Wed, 16 Aug 2023 20:22:17 -0400 Subject: [PATCH 100/183] ci: fix docker images names --- .github/workflows/everything.yml | 2 +- .../Dockerfile.ci-spack-ubuntu20.04-clang | 2 +- .../Dockerfile.ci-spack-ubuntu20.04-gcc | 2 +- .../Dockerfile.ci-spack-ubuntu20.04-intel | 2 +- scripts/ci/images/build-ubuntu.sh | 28 +++++++++---------- 5 files changed, 18 insertions(+), 18 deletions(-) diff --git a/.github/workflows/everything.yml b/.github/workflows/everything.yml index 29029bf261..680f0c5e8b 100644 --- a/.github/workflows/everything.yml +++ b/.github/workflows/everything.yml @@ -108,7 +108,7 @@ jobs: runs-on: ubuntu-20.04 container: - image: ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-${{ matrix.compiler }} + image: ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-${{ matrix.compiler }} options: --shm-size=1g env: GH_YML_JOBNAME: ${{ matrix.os }}-${{ matrix.compiler }}${{ matrix.shared == 'static' && '-static' || ''}}-${{ matrix.parallel }} diff --git a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang index 162f47eb89..7e0654719a 100644 --- a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang +++ b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-clang @@ -1,4 +1,4 @@ -FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-base +FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base ARG CLANG_VERSION=10 RUN apt-get update && apt-get install -y \ diff --git a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-gcc b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-gcc index 9564723ea3..741ac230d4 100644 --- a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-gcc +++ b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-gcc @@ -1,4 +1,4 @@ -FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-base +FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base ARG GCC_VERSION=8 RUN apt-get update && apt-get install -y \ diff --git a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-intel b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-intel index fe305c5bfd..2fe9ac6a8e 100644 --- a/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-intel +++ b/scripts/ci/images/Dockerfile.ci-spack-ubuntu20.04-intel @@ -1,4 +1,4 @@ -FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-base +FROM ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base RUN wget -O- https://apt.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB | gpg --dearmor | tee /usr/share/keyrings/oneapi-archive-keyring.gpg && \ echo "deb [signed-by=/usr/share/keyrings/oneapi-archive-keyring.gpg] https://apt.repos.intel.com/oneapi all main" | tee /etc/apt/sources.list.d/oneAPI.list && \ diff --git a/scripts/ci/images/build-ubuntu.sh b/scripts/ci/images/build-ubuntu.sh index b4ea53e133..1a535c1203 100755 --- a/scripts/ci/images/build-ubuntu.sh +++ b/scripts/ci/images/build-ubuntu.sh @@ -3,25 +3,25 @@ set -ex # Build the base image -docker build --rm -f ./Dockerfile.ci-spack-ubuntu20.04-base -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-base . +docker build --rm -f ./Dockerfile.ci-spack-ubuntu20.04-base -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base . # Which is also the gcc11 image -docker tag ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-base ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc11 +docker tag ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc11 # Build the gcc8, gcc9, and gcc10 images -docker build --rm --build-arg GCC_VERSION=8 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc8 . -docker build --rm --build-arg GCC_VERSION=9 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc9 . -docker build --rm --build-arg GCC_VERSION=10 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc10 . +docker build --rm --build-arg GCC_VERSION=8 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc8 . +docker build --rm --build-arg GCC_VERSION=9 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc9 . +docker build --rm --build-arg GCC_VERSION=10 -f ./Dockerfile.ci-spack-ubuntu20.04-gcc -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc10 . # Build the clang6 and clang10 images -docker build --rm --build-arg CLANG_VERSION=6.0 -f ./Dockerfile.ci-spack-ubuntu20.04-clang -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-clang6 . -docker build --rm --build-arg CLANG_VERSION=10 -f ./Dockerfile.ci-spack-ubuntu20.04-clang -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-clang10 . +docker build --rm --build-arg CLANG_VERSION=6.0 -f ./Dockerfile.ci-spack-ubuntu20.04-clang -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang6 . +docker build --rm --build-arg CLANG_VERSION=10 -f ./Dockerfile.ci-spack-ubuntu20.04-clang -t ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang10 . # Push images to github container registry -docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-base -docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc8 -docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc9 -docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc10 -docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-gcc11 -docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-clang6 -docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-tmp-clang10 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-base +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc8 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc9 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc10 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc11 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang6 +docker push ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-clang10 From 5397b295009523f9f55130753b49470bb53e6d77 Mon Sep 17 00:00:00 2001 From: Norbert Podhorszki Date: Thu, 17 Aug 2023 16:08:43 -0400 Subject: [PATCH 101/183] Fix ChunkV maintaining CurOffset when downsizing current chunk in Allocate() and creating the next chunk. --- .../toolkit/format/buffer/chunk/ChunkV.cpp | 1 + testing/adios2/CMakeLists.txt | 1 + testing/adios2/unit/CMakeLists.txt | 7 + testing/adios2/unit/TestChunkV.cpp | 146 ++++++++++++++++++ 4 files changed, 155 insertions(+) create mode 100644 testing/adios2/unit/CMakeLists.txt create mode 100644 testing/adios2/unit/TestChunkV.cpp diff --git a/source/adios2/toolkit/format/buffer/chunk/ChunkV.cpp b/source/adios2/toolkit/format/buffer/chunk/ChunkV.cpp index 27cb11e334..42df160434 100644 --- a/source/adios2/toolkit/format/buffer/chunk/ChunkV.cpp +++ b/source/adios2/toolkit/format/buffer/chunk/ChunkV.cpp @@ -193,6 +193,7 @@ BufferV::BufferPos ChunkV::Allocate(const size_t size, size_t align) { auto p = m_Chunks.back().Ptr + m_TailChunkPos; std::fill(p, p + alignment, 0); + CurOffset += alignment; } DataV.back().Size = actualsize; m_TailChunkPos = 0; diff --git a/testing/adios2/CMakeLists.txt b/testing/adios2/CMakeLists.txt index bddb8485f4..cccd09eb00 100644 --- a/testing/adios2/CMakeLists.txt +++ b/testing/adios2/CMakeLists.txt @@ -4,6 +4,7 @@ #------------------------------------------------------------------------------# add_subdirectory(interface) +add_subdirectory(unit) add_subdirectory(engine) add_subdirectory(transports) add_subdirectory(bindings) diff --git a/testing/adios2/unit/CMakeLists.txt b/testing/adios2/unit/CMakeLists.txt new file mode 100644 index 0000000000..7e3ec04207 --- /dev/null +++ b/testing/adios2/unit/CMakeLists.txt @@ -0,0 +1,7 @@ +#------------------------------------------------------------------------------# +#Distributed under the OSI - approved Apache License, Version 2.0. See +#accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +gtest_add_tests_helper(ChunkV MPI_NONE "" Toolkit.Format.Buffer. "") + diff --git a/testing/adios2/unit/TestChunkV.cpp b/testing/adios2/unit/TestChunkV.cpp new file mode 100644 index 0000000000..81b1ae5cbb --- /dev/null +++ b/testing/adios2/unit/TestChunkV.cpp @@ -0,0 +1,146 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + */ +#include +#include +#include + +#include +#include +#include + +#include +#include +#include + +#include + +namespace adios2 +{ +namespace format +{ + +static void print_array(const std::string name, const uint8_t *ptr, const uint8_t size) +{ + std::cout << name << " ptr = " << (void *)ptr << "= [ "; + for (uint8_t n = 0; n < size; ++n) + { + std::cout << (unsigned int)ptr[n] << " "; + } + std::cout << "]\n"; +} + +TEST(ADIOS2ChunkV, ADIOS2ChunkVAlignment) +{ + /* Align chunks to a certain byte size, here 32 */ + size_t MemBlockSize = 32; + size_t ChunkSize = 137; + ChunkV b = ChunkV("test", false, 1, MemBlockSize, ChunkSize); + + /* Align "allocation" to a certain byte size, like type size, here 8 */ + size_t AlignnmentSize = 8; + /* Make allocation not aligned to either AlignmentSize nor the MemBlockSize*/ + size_t AllocSize = 51; + + { + adios2::format::BufferV::BufferPos pos = b.Allocate(AllocSize, AlignnmentSize); + ASSERT_EQ(pos.bufferIdx, 0); + ASSERT_EQ(pos.globalPos, 0); + ASSERT_EQ(pos.posInBuffer, 0); + uint8_t *ptr = reinterpret_cast(b.GetPtr(pos.bufferIdx, pos.posInBuffer)); + for (uint8_t n = 0; n < AllocSize; ++n) + { + ptr[n] = n; + } + print_array("array 1", ptr, AllocSize); + + std::vector vec = b.DataVec(); + ASSERT_EQ(vec.size(), 1); + /* First block is alone in first chunk, so only real length (51) should be here */ + ASSERT_EQ(vec[0].iov_len, 51); + } + { + /* second block should fit in existing chunk but aligned to 56 bytes + (first AllocSize aligned to AlignmentSize is 56) */ + adios2::format::BufferV::BufferPos pos = b.Allocate(AllocSize, AlignnmentSize); + ASSERT_EQ(pos.bufferIdx, 0); + ASSERT_EQ(pos.globalPos, 56); + ASSERT_EQ(pos.posInBuffer, 56); + uint8_t *ptr = reinterpret_cast(b.GetPtr(pos.bufferIdx, pos.posInBuffer)); + for (uint8_t n = 0; n < AllocSize; ++n) + { + ptr[n] = n; + } + print_array("array 2", ptr, AllocSize); + + std::vector vec = b.DataVec(); + ASSERT_EQ(vec.size(), 1); + /* Seconf block is aligned to 56, so real length should be 56+51 */ + ASSERT_EQ(vec[0].iov_len, 56 + 51); + } + { + /* - third block should NOT fit in existing chunk + - first chunk should be 128 bytes long (aligned to 32) + - globalPos should be 128 (0 in this second chunk) + */ + adios2::format::BufferV::BufferPos pos = b.Allocate(AllocSize, AlignnmentSize); + ASSERT_EQ(pos.bufferIdx, 1); + ASSERT_EQ(pos.globalPos, 128); + ASSERT_EQ(pos.posInBuffer, 0); + uint8_t *ptr = reinterpret_cast(b.GetPtr(pos.bufferIdx, pos.posInBuffer)); + for (uint8_t n = 0; n < AllocSize; ++n) + { + ptr[n] = n; + } + print_array("array 3", ptr, AllocSize); + + std::vector vec = b.DataVec(); + ASSERT_EQ(vec.size(), 2); + /* First chunk must be finalized and aligned to MemBlockSize, so should be 128 now */ + ASSERT_EQ(vec[0].iov_len, 128); + /* Third block is alone in second chunk, so only real length (51) should be here */ + ASSERT_EQ(vec[1].iov_len, 51); + + const uint8_t *chunk0 = reinterpret_cast(vec[0].iov_base); + const uint8_t *chunk1 = reinterpret_cast(vec[1].iov_base); + /* first array in chunk0[0..AllocSize-1]*/ + ASSERT_EQ(chunk0[0], 0); + ASSERT_EQ(chunk0[AllocSize - 1], AllocSize - 1); + /* alignment fill for 5 bytes*/ + ASSERT_EQ(chunk0[51], 0); + ASSERT_EQ(chunk0[52], 0); + ASSERT_EQ(chunk0[53], 0); + ASSERT_EQ(chunk0[54], 0); + ASSERT_EQ(chunk0[55], 0); + + /* second array in chunk0[56..107]*/ + ASSERT_EQ(chunk0[56], 0); + ASSERT_EQ(chunk0[56 + AllocSize - 1], AllocSize - 1); + /* alignment fill for 5 bytes*/ + ASSERT_EQ(chunk0[107], 0); + ASSERT_EQ(chunk0[108], 0); + ASSERT_EQ(chunk0[109], 0); + ASSERT_EQ(chunk0[110], 0); + ASSERT_EQ(chunk0[111], 0); + /* aligment fill to MemBlockSize for 16 bytes */ + ASSERT_EQ(chunk0[112], 0); + ASSERT_EQ(chunk0[127], 0); + + /* third array in chunk1[0..AllocSize-1]*/ + ASSERT_EQ(chunk1[1], 1); + ASSERT_EQ(chunk1[AllocSize - 1], AllocSize - 1); + } +} +} +} + +int main(int argc, char **argv) +{ + + int result; + ::testing::InitGoogleTest(&argc, argv); + result = RUN_ALL_TESTS(); + + return result; +} From e7f4ef0de22fd4bba2078d14b2a64f2a4d068ba0 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Wed, 3 May 2023 13:05:00 -0400 Subject: [PATCH 102/183] add codeql workflow --- .github/workflows/everything.yml | 54 +++++++++++++++++++ .../ci-ubuntu20.04-gcc8-serial-codeql.cmake | 35 ++++++++++++ 2 files changed, 89 insertions(+) create mode 100644 scripts/ci/cmake/ci-ubuntu20.04-gcc8-serial-codeql.cmake diff --git a/.github/workflows/everything.yml b/.github/workflows/everything.yml index 680f0c5e8b..a34d758595 100644 --- a/.github/workflows/everything.yml +++ b/.github/workflows/everything.yml @@ -492,6 +492,60 @@ jobs: - name: Test run: /opt/adios2/source/testing/contract/${{ matrix.code }}/test.sh +####################################### +# Code analysis builds +####################################### + + analyze: + needs: [format, git_checks] + name: CodeQL + runs-on: ubuntu-latest + container: + image: 'ghcr.io/ornladios/adios2:ci-spack-ubuntu20.04-gcc8' + env: + GH_YML_JOBNAME: ubuntu20.04-gcc8-serial-codeql + GH_YML_BASE_OS: Linux + GH_YML_MATRIX_OS: ubuntu20.04 + GH_YML_MATRIX_COMPILER: gcc8 + GH_YML_MATRIX_PARALLEL: serial + permissions: + actions: read + contents: read + security-events: write + + strategy: + fail-fast: false + matrix: + language: [ 'cpp' ] + + steps: + - uses: actions/checkout@v3 + with: + path: gha + - uses: actions/checkout@v3 + with: + ref: ${{ github.event.pull_request.head.sha }} + path: source + - name: Initialize CodeQL + uses: github/codeql-action/init@v2 + with: + languages: ${{ matrix.language }} + config: | + paths-ignore: + - source/thirdparty/ + - name: Setup + run: gha/scripts/ci/gh-actions/linux-setup.sh + - name: Update + run: gha/scripts/ci/gh-actions/run.sh update + - name: Configure + run: gha/scripts/ci/gh-actions/run.sh configure + - name: Build + run: gha/scripts/ci/gh-actions/run.sh build + - name: Perform CodeQL Analysis + uses: github/codeql-action/analyze@v2 + with: + category: "/language:${{matrix.language}}" + ####################################### # Workaround for skipping matrix jobs ####################################### diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc8-serial-codeql.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-serial-codeql.cmake new file mode 100644 index 0000000000..2e2855cb92 --- /dev/null +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-serial-codeql.cmake @@ -0,0 +1,35 @@ +set(ENV{CC} gcc) +set(ENV{CXX} g++) +set(ENV{FC} gfortran) + +execute_process( + COMMAND "python3-config" "--prefix" + OUTPUT_VARIABLE PY_ROOT + OUTPUT_STRIP_TRAILING_WHITESPACE) + +set(dashboard_cache " +ADIOS2_USE_BZip2:BOOL=ON +ADIOS2_USE_Blosc:BOOL=ON +ADIOS2_USE_DataMan:BOOL=ON +ADIOS2_USE_Fortran:BOOL=ON +ADIOS2_USE_HDF5:BOOL=ON +ADIOS2_USE_MPI:BOOL=OFF +ADIOS2_USE_Python:BOOL=ON +ADIOS2_USE_SZ:BOOL=ON +ADIOS2_USE_ZeroMQ:STRING=ON +ADIOS2_USE_ZFP:BOOL=ON + +Python_ROOT_DIR:PATH=${PY_ROOT} +Python_FIND_STRATEGY:STRING=LOCATION +Python_FIND_FRAMEWORK:STRING=FIRST + +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache +CMAKE_C_FLAGS:STRING=-Wall +CMAKE_CXX_FLAGS:STRING=-Wall +CMAKE_Fortran_FLAGS:STRING=-Wall +") + +set(CTEST_CMAKE_GENERATOR "Ninja") +list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) From c54c37953bc76d01cead0e1bc4c4a8388a28546d Mon Sep 17 00:00:00 2001 From: Norbert Podhorszki Date: Fri, 18 Aug 2023 07:13:09 -0400 Subject: [PATCH 103/183] Rename test. fix windows compile errors. --- testing/adios2/unit/CMakeLists.txt | 2 +- testing/adios2/unit/TestChunkV.cpp | 43 +++++++++++++++++++----------- 2 files changed, 29 insertions(+), 16 deletions(-) diff --git a/testing/adios2/unit/CMakeLists.txt b/testing/adios2/unit/CMakeLists.txt index 7e3ec04207..de65ea8510 100644 --- a/testing/adios2/unit/CMakeLists.txt +++ b/testing/adios2/unit/CMakeLists.txt @@ -3,5 +3,5 @@ #accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -gtest_add_tests_helper(ChunkV MPI_NONE "" Toolkit.Format.Buffer. "") +gtest_add_tests_helper(ChunkV MPI_NONE "" Unit. "") diff --git a/testing/adios2/unit/TestChunkV.cpp b/testing/adios2/unit/TestChunkV.cpp index 81b1ae5cbb..a56e6f033a 100644 --- a/testing/adios2/unit/TestChunkV.cpp +++ b/testing/adios2/unit/TestChunkV.cpp @@ -21,17 +21,18 @@ namespace adios2 namespace format { -static void print_array(const std::string name, const uint8_t *ptr, const uint8_t size) +static void print_array(const std::string name, const uint8_t *ptr, + const size_t size) { std::cout << name << " ptr = " << (void *)ptr << "= [ "; - for (uint8_t n = 0; n < size; ++n) + for (size_t n = 0; n < size; ++n) { std::cout << (unsigned int)ptr[n] << " "; } std::cout << "]\n"; } -TEST(ADIOS2ChunkV, ADIOS2ChunkVAlignment) +TEST(ChunkV, AlignmentToMemBlockSize) { /* Align chunks to a certain byte size, here 32 */ size_t MemBlockSize = 32; @@ -40,15 +41,18 @@ TEST(ADIOS2ChunkV, ADIOS2ChunkVAlignment) /* Align "allocation" to a certain byte size, like type size, here 8 */ size_t AlignnmentSize = 8; - /* Make allocation not aligned to either AlignmentSize nor the MemBlockSize*/ + /* Make allocation not aligned to either AlignmentSize nor the + * MemBlockSize*/ size_t AllocSize = 51; { - adios2::format::BufferV::BufferPos pos = b.Allocate(AllocSize, AlignnmentSize); + adios2::format::BufferV::BufferPos pos = + b.Allocate(AllocSize, AlignnmentSize); ASSERT_EQ(pos.bufferIdx, 0); ASSERT_EQ(pos.globalPos, 0); ASSERT_EQ(pos.posInBuffer, 0); - uint8_t *ptr = reinterpret_cast(b.GetPtr(pos.bufferIdx, pos.posInBuffer)); + uint8_t *ptr = reinterpret_cast( + b.GetPtr(pos.bufferIdx, pos.posInBuffer)); for (uint8_t n = 0; n < AllocSize; ++n) { ptr[n] = n; @@ -57,17 +61,20 @@ TEST(ADIOS2ChunkV, ADIOS2ChunkVAlignment) std::vector vec = b.DataVec(); ASSERT_EQ(vec.size(), 1); - /* First block is alone in first chunk, so only real length (51) should be here */ + /* First block is alone in first chunk, so only real length (51) should + * be here */ ASSERT_EQ(vec[0].iov_len, 51); } { /* second block should fit in existing chunk but aligned to 56 bytes (first AllocSize aligned to AlignmentSize is 56) */ - adios2::format::BufferV::BufferPos pos = b.Allocate(AllocSize, AlignnmentSize); + adios2::format::BufferV::BufferPos pos = + b.Allocate(AllocSize, AlignnmentSize); ASSERT_EQ(pos.bufferIdx, 0); ASSERT_EQ(pos.globalPos, 56); ASSERT_EQ(pos.posInBuffer, 56); - uint8_t *ptr = reinterpret_cast(b.GetPtr(pos.bufferIdx, pos.posInBuffer)); + uint8_t *ptr = reinterpret_cast( + b.GetPtr(pos.bufferIdx, pos.posInBuffer)); for (uint8_t n = 0; n < AllocSize; ++n) { ptr[n] = n; @@ -84,11 +91,13 @@ TEST(ADIOS2ChunkV, ADIOS2ChunkVAlignment) - first chunk should be 128 bytes long (aligned to 32) - globalPos should be 128 (0 in this second chunk) */ - adios2::format::BufferV::BufferPos pos = b.Allocate(AllocSize, AlignnmentSize); + adios2::format::BufferV::BufferPos pos = + b.Allocate(AllocSize, AlignnmentSize); ASSERT_EQ(pos.bufferIdx, 1); ASSERT_EQ(pos.globalPos, 128); ASSERT_EQ(pos.posInBuffer, 0); - uint8_t *ptr = reinterpret_cast(b.GetPtr(pos.bufferIdx, pos.posInBuffer)); + uint8_t *ptr = reinterpret_cast( + b.GetPtr(pos.bufferIdx, pos.posInBuffer)); for (uint8_t n = 0; n < AllocSize; ++n) { ptr[n] = n; @@ -97,13 +106,17 @@ TEST(ADIOS2ChunkV, ADIOS2ChunkVAlignment) std::vector vec = b.DataVec(); ASSERT_EQ(vec.size(), 2); - /* First chunk must be finalized and aligned to MemBlockSize, so should be 128 now */ + /* First chunk must be finalized and aligned to MemBlockSize, so should + * be 128 now */ ASSERT_EQ(vec[0].iov_len, 128); - /* Third block is alone in second chunk, so only real length (51) should be here */ + /* Third block is alone in second chunk, so only real length (51) should + * be here */ ASSERT_EQ(vec[1].iov_len, 51); - const uint8_t *chunk0 = reinterpret_cast(vec[0].iov_base); - const uint8_t *chunk1 = reinterpret_cast(vec[1].iov_base); + const uint8_t *chunk0 = + reinterpret_cast(vec[0].iov_base); + const uint8_t *chunk1 = + reinterpret_cast(vec[1].iov_base); /* first array in chunk0[0..AllocSize-1]*/ ASSERT_EQ(chunk0[0], 0); ASSERT_EQ(chunk0[AllocSize - 1], AllocSize - 1); From 984e568305783ed921c7f6efd32b294f6833842f Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Fri, 18 Aug 2023 12:38:27 -0400 Subject: [PATCH 104/183] BP5Deserialize: modify changes to keep abi compt --- .../toolkit/format/bp5/BP5Deserializer.cpp | 18 ++++++++++++++---- .../toolkit/format/bp5/BP5Deserializer.h | 1 - 2 files changed, 14 insertions(+), 5 deletions(-) diff --git a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp index 863d619685..7dc7ade910 100644 --- a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp +++ b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp @@ -47,6 +47,13 @@ namespace adios2 { namespace format { + +namespace +{ +// To keep ABI compatibility with ADIOS 2.9.0 +static std::map *> m_FreeableJDOA; +} + static void ApplyElementMinMax(MinMaxStruct &MinMax, DataType Type, void *Element); @@ -707,7 +714,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, m_JoinedDimenOffsetArrays = new std::vector(); m_JoinedDimenOffsetArrays->resize(writerCohortSize); JoinedDimArray[Step] = m_JoinedDimenOffsetArrays; - m_FreeableJDOA = nullptr; + m_FreeableJDOA[this] = nullptr; } } else @@ -725,7 +732,7 @@ void BP5Deserializer::InstallMetaData(void *MetadataBlock, size_t BlockLen, if (!m_JoinedDimenOffsetArrays) { m_JoinedDimenOffsetArrays = new std::vector(); - m_FreeableJDOA = m_JoinedDimenOffsetArrays; + m_FreeableJDOA[this] = m_JoinedDimenOffsetArrays; } if (writerCohortSize > m_JoinedDimenOffsetArrays->size()) { @@ -1974,6 +1981,7 @@ BP5Deserializer::BP5Deserializer(bool WriterIsRowMajor, bool ReaderIsRowMajor, { FMContext Tmp = create_local_FMcontext(); ReaderFFSContext = create_FFSContext_FM(Tmp); + m_FreeableJDOA[this] = nullptr; free_FMcontext(Tmp); } @@ -2004,14 +2012,16 @@ BP5Deserializer::~BP5Deserializer() { delete m_FreeableMBA; } - if (m_FreeableJDOA) + if (m_FreeableJDOA[this]) { - delete m_FreeableJDOA; + delete m_FreeableJDOA[this]; } for (auto &step : MetadataBaseArray) { delete step; } + + m_FreeableJDOA.erase(this); } void *BP5Deserializer::GetMetadataBase(BP5VarRec *VarRec, size_t Step, diff --git a/source/adios2/toolkit/format/bp5/BP5Deserializer.h b/source/adios2/toolkit/format/bp5/BP5Deserializer.h index 798108678b..b7f6e2e082 100644 --- a/source/adios2/toolkit/format/bp5/BP5Deserializer.h +++ b/source/adios2/toolkit/format/bp5/BP5Deserializer.h @@ -250,7 +250,6 @@ class BP5Deserializer : virtual public BP5Base /* We assume operators are not thread-safe, call Decompress() one at a time */ std::mutex mutexDecompress; - std::vector *m_FreeableJDOA = nullptr; }; } // end namespace format From 29bf70feea5dc6b53ed5d511ac3fd65b1da43104 Mon Sep 17 00:00:00 2001 From: Junmin Gu Date: Mon, 21 Aug 2023 19:05:45 -0700 Subject: [PATCH 105/183] match type of timestep for h5 engine to size_t (same as adios VariableBase class) when storing to hdf5, check the limit of size_t and match to the right type (uint, ulong, default ulonglong) --- source/adios2/engine/hdf5/HDF5ReaderP.cpp | 49 ++---------------- source/adios2/engine/hdf5/HDF5ReaderP.h | 3 +- .../toolkit/interop/hdf5/HDF5Common.cpp | 50 ++++++++++++------- .../adios2/toolkit/interop/hdf5/HDF5Common.h | 16 +++--- 4 files changed, 47 insertions(+), 71 deletions(-) diff --git a/source/adios2/engine/hdf5/HDF5ReaderP.cpp b/source/adios2/engine/hdf5/HDF5ReaderP.cpp index cd39481fdf..dc096f0f86 100644 --- a/source/adios2/engine/hdf5/HDF5ReaderP.cpp +++ b/source/adios2/engine/hdf5/HDF5ReaderP.cpp @@ -77,13 +77,6 @@ void HDF5ReaderP::Init() m_H5File.ParseParameters(m_IO); /* - int ts = m_H5File.GetNumAdiosSteps(); - - if (ts == 0) - { - helper::Throw( "Engine", "HDF5ReaderP", "Init", - "This h5 file is NOT written by ADIOS2"); - } */ m_H5File.ReadAttrToIO(m_IO); if (!m_InStreamMode) @@ -103,37 +96,6 @@ void HDF5ReaderP::Init() template size_t HDF5ReaderP::ReadDataset(hid_t dataSetId, hid_t h5Type, Variable &variable, T *values) { - /* - size_t variableStart = variable.m_StepsStart; - - if ((m_H5File.m_IsGeneratedByAdios) && (ts >= 0)) - { - try - { - m_H5File.SetAdiosStep(variableStart + ts); - } - catch (std::exception &e) - { - printf("[Not fatal] %s\n", e.what()); - return 0; - //break; - } - } - - std::vector chain; - if (!m_H5File.OpenDataset(variable.m_Name, chain)) { - return -1; - } - - hid_t dataSetId = chain.back(); - interop::HDF5DatasetGuard g(chain); - //hid_t dataSetId = - // H5Dopen(m_H5File.m_GroupId, variable.m_Name.c_str(), H5P_DEFAULT); - if (dataSetId < 0) - { - return 0; - } - */ hid_t fileSpace = H5Dget_space(dataSetId); interop::HDF5TypeGuard g_fs(fileSpace, interop::E_H5_SPACE); @@ -248,8 +210,8 @@ void HDF5ReaderP::UseHDFRead(Variable &variable, T *data, hid_t h5Type) } T *values = data; - unsigned int ts = 0; - // T *values = data; + //unsigned int ts = 0; + size_t ts = 0; size_t variableStart = variable.m_StepsStart; /* // looks like m_StepsStart is defaulted to be 0 now. @@ -278,8 +240,7 @@ void HDF5ReaderP::UseHDFRead(Variable &variable, T *data, hid_t h5Type) } hid_t dataSetId = chain.back(); interop::HDF5DatasetGuard g(chain); - // hid_t dataSetId = - // H5Dopen(m_H5File.m_GroupId, variable.m_Name.c_str(), H5P_DEFAULT); + if (dataSetId < 0) { return; @@ -291,8 +252,6 @@ void HDF5ReaderP::UseHDFRead(Variable &variable, T *data, hid_t h5Type) { break; } - // H5Sclose(fileSpace); - // H5Dclose(dataSetId); ts++; values += slabsize; @@ -304,7 +263,7 @@ void HDF5ReaderP::UseHDFRead(Variable &variable, T *data, hid_t h5Type) StepStatus HDF5ReaderP::BeginStep(StepMode mode, const float timeoutSeconds) { - const unsigned int ts = m_H5File.GetNumAdiosSteps(); + const size_t ts = m_H5File.GetNumAdiosSteps(); if (m_StreamAt >= ts) { diff --git a/source/adios2/engine/hdf5/HDF5ReaderP.h b/source/adios2/engine/hdf5/HDF5ReaderP.h index 67941c72f6..72a3024deb 100644 --- a/source/adios2/engine/hdf5/HDF5ReaderP.h +++ b/source/adios2/engine/hdf5/HDF5ReaderP.h @@ -54,7 +54,8 @@ class HDF5ReaderP : public Engine void Init() final; bool m_InStreamMode = false; // default is not streaming, i.e. set var timestep range - unsigned int m_StreamAt = 0; // stream step counter + //unsigned int m_StreamAt = 0; // stream step counter + size_t m_StreamAt = 0 ; #define declare_type(T) \ void DoGetSync(Variable &, T *) final; \ void DoGetDeferred(Variable &, T *) final; \ diff --git a/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp b/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp index 682ea45cf0..a5a88705e5 100644 --- a/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp +++ b/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp @@ -17,6 +17,7 @@ #include #include #include +#include #include "adios2/helper/adiosFunctions.h" // IsRowMajor #include // strlen @@ -85,6 +86,14 @@ HDF5Common::HDF5Common() H5T_NATIVE_LDOUBLE); m_PropertyTxfID = H5Pcreate(H5P_DATASET_XFER); + + size_t size_t_max = (size_t)-1; + if (size_t_max <= std::numeric_limits::max()) + m_TimeStepH5T = H5T_NATIVE_UINT; + else if (size_t_max <= std::numeric_limits::max()) + m_TimeStepH5T = H5T_NATIVE_ULONG; + + // default is m_TimeStepH5T = H5T_NATIVE_ULLONG; } HDF5Common::~HDF5Common() { Close(); } @@ -279,32 +288,36 @@ void HDF5Common::WriteAdiosSteps() hid_t s = H5Screate(H5S_SCALAR); hid_t attr = H5Aexists(m_FileId, ATTRNAME_NUM_STEPS.c_str()); + if (0 == attr) - attr = H5Acreate(m_FileId, ATTRNAME_NUM_STEPS.c_str(), H5T_NATIVE_UINT, s, H5P_DEFAULT, + attr = H5Acreate(m_FileId, ATTRNAME_NUM_STEPS.c_str(), m_TimeStepH5T, s, H5P_DEFAULT, H5P_DEFAULT); else attr = H5Aopen(m_FileId, ATTRNAME_NUM_STEPS.c_str(), H5P_DEFAULT); - unsigned int totalAdiosSteps = m_CurrentAdiosStep + 1; + //unsigned int totalAdiosSteps = m_CurrentAdiosStep + 1; + size_t totalAdiosSteps = m_CurrentAdiosStep + 1; if (m_GroupId < 0) { totalAdiosSteps = m_CurrentAdiosStep; } - H5Awrite(attr, H5T_NATIVE_UINT, &totalAdiosSteps); + H5Awrite(attr, m_TimeStepH5T, &totalAdiosSteps); H5Sclose(s); H5Aclose(attr); } -unsigned int HDF5Common::GetAdiosStep() const { return m_NumAdiosSteps; } +size_t HDF5Common::GetAdiosStep() const { return m_NumAdiosSteps; } -unsigned int HDF5Common::GetNumAdiosSteps() +// A valid file should have at least 1 step. +size_t HDF5Common::GetNumAdiosSteps() { if (m_WriteMode) { - return static_cast(-1); + //return static_cast(-1); + return 0; } if (m_FileId < 0) @@ -329,7 +342,7 @@ unsigned int HDF5Common::GetNumAdiosSteps() { hid_t attr = H5Aopen(m_FileId, ATTRNAME_NUM_STEPS.c_str(), H5P_DEFAULT); - H5Aread(attr, H5T_NATIVE_UINT, &m_NumAdiosSteps); + H5Aread(attr, m_TimeStepH5T, &m_NumAdiosSteps); H5Aclose(attr); } } @@ -347,9 +360,9 @@ void HDF5Common::ReadAllVariables(core::IO &io) } GetNumAdiosSteps(); - unsigned int i = 0; + //unsigned int i = 0; - for (i = 0; i < m_NumAdiosSteps; i++) + for (auto i = 0; i < m_NumAdiosSteps; i++) { ReadVariables(i, io); } @@ -362,7 +375,6 @@ void HDF5Common::FindVarsFromH5(core::IO &io, hid_t top_id, const char *gname, c // std::string stepStr; hsize_t numObj; - // StaticGetAdiosStepString(stepStr, ts); hid_t gid = H5Gopen2(top_id, gname, H5P_DEFAULT); HDF5TypeGuard g(gid, E_H5_GROUP); /// if (gid > 0) { @@ -798,7 +810,7 @@ void HDF5Common::Close() m_GroupId = -1; } -void HDF5Common::SetAdiosStep(int step) +void HDF5Common::SetAdiosStep(size_t step) { if (m_WriteMode) helper::Throw("Toolkit", "interop::hdf5::HDF5Common", @@ -811,13 +823,13 @@ void HDF5Common::SetAdiosStep(int step) GetNumAdiosSteps(); - unsigned int ustep = static_cast(step); - if (ustep >= m_NumAdiosSteps) + //unsigned int ustep = static_cast(step); + if (step >= m_NumAdiosSteps) helper::Throw("Toolkit", "interop::hdf5::HDF5Common", "SetAdiosStep", "given time step is more than actual known steps"); - if (m_CurrentAdiosStep == ustep) + if (m_CurrentAdiosStep == step) { return; } @@ -835,7 +847,7 @@ void HDF5Common::SetAdiosStep(int step) "ERROR: unable to open HDF5 group " + stepName + ", in call to Open"); } - m_CurrentAdiosStep = ustep; + m_CurrentAdiosStep = step; } // @@ -896,11 +908,11 @@ void HDF5Common::Advance() } else { - if (m_NumAdiosSteps == 0) + if (0 == m_NumAdiosSteps) { GetNumAdiosSteps(); } - if (m_CurrentAdiosStep + 1 >= m_NumAdiosSteps) + if ((m_CurrentAdiosStep + 1) >= m_NumAdiosSteps) { return; } @@ -1467,7 +1479,7 @@ void HDF5Common::LocateAttrParent(const std::string &attrName, std::vector= 1) { std::string ts; - for (unsigned int i = 0; i < m_CurrentAdiosStep; i++) + for (auto i = 0; i < m_CurrentAdiosStep; i++) { StaticGetAdiosStepString(ts, i); for (size_t j = 0; j < list.size() - 1; j++) @@ -1725,7 +1737,7 @@ void HDF5Common::ReadNativeAttrToIO(core::IO &io, hid_t datasetId, std::string c } } -void HDF5Common::StaticGetAdiosStepString(std::string &stepName, int ts) +void HDF5Common::StaticGetAdiosStepString(std::string &stepName, size_t ts) { stepName = "/Step" + std::to_string(ts); } diff --git a/source/adios2/toolkit/interop/hdf5/HDF5Common.h b/source/adios2/toolkit/interop/hdf5/HDF5Common.h index b07a9b31d2..d8d9118dc8 100644 --- a/source/adios2/toolkit/interop/hdf5/HDF5Common.h +++ b/source/adios2/toolkit/interop/hdf5/HDF5Common.h @@ -172,10 +172,11 @@ class HDF5Common void ReadNativeAttrToIO(core::IO &io, hid_t datasetId, std::string const &pathFromRoot); - void SetAdiosStep(int ts); + //void SetAdiosStep(int ts); + void SetAdiosStep(size_t ts); - unsigned int GetNumAdiosSteps(); - unsigned int GetAdiosStep() const; + size_t GetNumAdiosSteps(); + size_t GetAdiosStep() const; void WriteAdiosSteps(); void ReadVariables(unsigned int ts, core::IO &io); @@ -200,7 +201,7 @@ class HDF5Common void AddNonStringAttribute(core::IO &io, std::string const &attrName, hid_t attrId, hid_t h5Type, hsize_t arraySize); - static void StaticGetAdiosStepString(std::string &adiosStepName, int ts); + static void StaticGetAdiosStepString(std::string &adiosStepName, size_t ts); hid_t m_PropertyListId = -1; hid_t m_PropertyTxfID = -1; @@ -212,7 +213,8 @@ class HDF5Common hid_t m_DefH5TypeComplexFloat; hid_t m_DefH5TypeBlockStat; - unsigned int m_CurrentAdiosStep = 0; + //unsigned int m_CurrentAdiosStep = 0; + size_t m_CurrentAdiosStep = 0; void CheckWriteGroup(); @@ -247,7 +249,8 @@ class HDF5Common std::vector &, std::vector &); bool m_WriteMode = false; - unsigned int m_NumAdiosSteps = 0; + //unsigned int m_NumAdiosSteps = 0; + size_t m_NumAdiosSteps = 0; MPI_API const *m_MPI = nullptr; int m_CommRank = 0; @@ -258,6 +261,7 @@ class HDF5Common template void AddStats(const core::Variable &variable, hid_t parentId, std::vector &stats); + hid_t m_TimeStepH5T = H5T_NATIVE_ULLONG;; hid_t m_ChunkPID; int m_ChunkDim; std::set m_ChunkVarNames; From 702e298523ffb47bbdcf44b8dead746a788db164 Mon Sep 17 00:00:00 2001 From: Junmin Gu Date: Mon, 21 Aug 2023 19:10:19 -0700 Subject: [PATCH 106/183] clang-format --- source/adios2/engine/hdf5/HDF5ReaderP.cpp | 4 ++-- source/adios2/engine/hdf5/HDF5ReaderP.h | 4 ++-- .../toolkit/interop/hdf5/HDF5Common.cpp | 24 +++++++++---------- .../adios2/toolkit/interop/hdf5/HDF5Common.h | 9 +++---- 4 files changed, 21 insertions(+), 20 deletions(-) diff --git a/source/adios2/engine/hdf5/HDF5ReaderP.cpp b/source/adios2/engine/hdf5/HDF5ReaderP.cpp index dc096f0f86..ffd5d1ab61 100644 --- a/source/adios2/engine/hdf5/HDF5ReaderP.cpp +++ b/source/adios2/engine/hdf5/HDF5ReaderP.cpp @@ -77,7 +77,7 @@ void HDF5ReaderP::Init() m_H5File.ParseParameters(m_IO); /* - */ + */ m_H5File.ReadAttrToIO(m_IO); if (!m_InStreamMode) { @@ -210,7 +210,7 @@ void HDF5ReaderP::UseHDFRead(Variable &variable, T *data, hid_t h5Type) } T *values = data; - //unsigned int ts = 0; + // unsigned int ts = 0; size_t ts = 0; size_t variableStart = variable.m_StepsStart; /* diff --git a/source/adios2/engine/hdf5/HDF5ReaderP.h b/source/adios2/engine/hdf5/HDF5ReaderP.h index 72a3024deb..5d89b7d866 100644 --- a/source/adios2/engine/hdf5/HDF5ReaderP.h +++ b/source/adios2/engine/hdf5/HDF5ReaderP.h @@ -54,8 +54,8 @@ class HDF5ReaderP : public Engine void Init() final; bool m_InStreamMode = false; // default is not streaming, i.e. set var timestep range - //unsigned int m_StreamAt = 0; // stream step counter - size_t m_StreamAt = 0 ; + // unsigned int m_StreamAt = 0; // stream step counter + size_t m_StreamAt = 0; #define declare_type(T) \ void DoGetSync(Variable &, T *) final; \ void DoGetDeferred(Variable &, T *) final; \ diff --git a/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp b/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp index a5a88705e5..fb3b2a4f86 100644 --- a/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp +++ b/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp @@ -14,10 +14,10 @@ #include #include #include +#include #include #include #include -#include #include "adios2/helper/adiosFunctions.h" // IsRowMajor #include // strlen @@ -88,12 +88,12 @@ HDF5Common::HDF5Common() m_PropertyTxfID = H5Pcreate(H5P_DATASET_XFER); size_t size_t_max = (size_t)-1; - if (size_t_max <= std::numeric_limits::max()) - m_TimeStepH5T = H5T_NATIVE_UINT; - else if (size_t_max <= std::numeric_limits::max()) - m_TimeStepH5T = H5T_NATIVE_ULONG; - - // default is m_TimeStepH5T = H5T_NATIVE_ULLONG; + if (size_t_max <= std::numeric_limits::max()) + m_TimeStepH5T = H5T_NATIVE_UINT; + else if (size_t_max <= std::numeric_limits::max()) + m_TimeStepH5T = H5T_NATIVE_ULONG; + + // default is m_TimeStepH5T = H5T_NATIVE_ULLONG; } HDF5Common::~HDF5Common() { Close(); } @@ -295,7 +295,7 @@ void HDF5Common::WriteAdiosSteps() else attr = H5Aopen(m_FileId, ATTRNAME_NUM_STEPS.c_str(), H5P_DEFAULT); - //unsigned int totalAdiosSteps = m_CurrentAdiosStep + 1; + // unsigned int totalAdiosSteps = m_CurrentAdiosStep + 1; size_t totalAdiosSteps = m_CurrentAdiosStep + 1; if (m_GroupId < 0) @@ -316,8 +316,8 @@ size_t HDF5Common::GetNumAdiosSteps() { if (m_WriteMode) { - //return static_cast(-1); - return 0; + // return static_cast(-1); + return 0; } if (m_FileId < 0) @@ -360,7 +360,7 @@ void HDF5Common::ReadAllVariables(core::IO &io) } GetNumAdiosSteps(); - //unsigned int i = 0; + // unsigned int i = 0; for (auto i = 0; i < m_NumAdiosSteps; i++) { @@ -823,7 +823,7 @@ void HDF5Common::SetAdiosStep(size_t step) GetNumAdiosSteps(); - //unsigned int ustep = static_cast(step); + // unsigned int ustep = static_cast(step); if (step >= m_NumAdiosSteps) helper::Throw("Toolkit", "interop::hdf5::HDF5Common", "SetAdiosStep", diff --git a/source/adios2/toolkit/interop/hdf5/HDF5Common.h b/source/adios2/toolkit/interop/hdf5/HDF5Common.h index d8d9118dc8..836d3ed27e 100644 --- a/source/adios2/toolkit/interop/hdf5/HDF5Common.h +++ b/source/adios2/toolkit/interop/hdf5/HDF5Common.h @@ -172,7 +172,7 @@ class HDF5Common void ReadNativeAttrToIO(core::IO &io, hid_t datasetId, std::string const &pathFromRoot); - //void SetAdiosStep(int ts); + // void SetAdiosStep(int ts); void SetAdiosStep(size_t ts); size_t GetNumAdiosSteps(); @@ -213,7 +213,7 @@ class HDF5Common hid_t m_DefH5TypeComplexFloat; hid_t m_DefH5TypeBlockStat; - //unsigned int m_CurrentAdiosStep = 0; + // unsigned int m_CurrentAdiosStep = 0; size_t m_CurrentAdiosStep = 0; void CheckWriteGroup(); @@ -249,7 +249,7 @@ class HDF5Common std::vector &, std::vector &); bool m_WriteMode = false; - //unsigned int m_NumAdiosSteps = 0; + // unsigned int m_NumAdiosSteps = 0; size_t m_NumAdiosSteps = 0; MPI_API const *m_MPI = nullptr; @@ -261,7 +261,8 @@ class HDF5Common template void AddStats(const core::Variable &variable, hid_t parentId, std::vector &stats); - hid_t m_TimeStepH5T = H5T_NATIVE_ULLONG;; + hid_t m_TimeStepH5T = H5T_NATIVE_ULLONG; + ; hid_t m_ChunkPID; int m_ChunkDim; std::set m_ChunkVarNames; From 39075681bacbfa9b816fa80d72728820553d1136 Mon Sep 17 00:00:00 2001 From: Junmin Gu Date: Mon, 21 Aug 2023 21:08:48 -0700 Subject: [PATCH 107/183] removing warning from auto --- source/adios2/toolkit/interop/hdf5/HDF5Common.cpp | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp b/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp index fb3b2a4f86..5dc188bffb 100644 --- a/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp +++ b/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp @@ -362,7 +362,7 @@ void HDF5Common::ReadAllVariables(core::IO &io) GetNumAdiosSteps(); // unsigned int i = 0; - for (auto i = 0; i < m_NumAdiosSteps; i++) + for (size_t i = 0; i < m_NumAdiosSteps; i++) { ReadVariables(i, io); } @@ -1479,7 +1479,7 @@ void HDF5Common::LocateAttrParent(const std::string &attrName, std::vector= 1) { std::string ts; - for (auto i = 0; i < m_CurrentAdiosStep; i++) + for (size_t i = 0; i < m_CurrentAdiosStep; i++) { StaticGetAdiosStepString(ts, i); for (size_t j = 0; j < list.size() - 1; j++) From 3ffc8e4985e4c9b7ed6fb941de334198d7ee9e98 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Wed, 16 Aug 2023 18:12:50 -0400 Subject: [PATCH 108/183] cmake: correct prefer_shared_blosc behavior --- cmake/DetectOptions.cmake | 6 +++++- 1 file changed, 5 insertions(+), 1 deletion(-) diff --git a/cmake/DetectOptions.cmake b/cmake/DetectOptions.cmake index 5b71c1565b..c74706d0c5 100644 --- a/cmake/DetectOptions.cmake +++ b/cmake/DetectOptions.cmake @@ -89,7 +89,11 @@ if(Blosc2_FOUND) set(adios2_blosc2_tgt Blosc2::Blosc2) if (Blosc2_VERSION VERSION_GREATER_EQUAL 2.10.1) - set(adios2_blosc2_tgt Blosc2::blosc2_$,shared,static>) + if (Blosc2_shlib_available) + set(adios2_blosc2_tgt Blosc2::blosc2_$,shared,static>) + else() + set(adios2_blosc2_tgt Blosc2::blosc2_static) + endif() endif() add_library(adios2_blosc2 INTERFACE) From 7283f5e06987ea397440277b6340f261a2291897 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Tue, 15 Aug 2023 19:28:37 -0400 Subject: [PATCH 109/183] ci: Create static minimal build --- .github/workflows/everything.yml | 4 ++ .../ci-ubuntu20.04-gcc8-static-serial.cmake | 45 +++++++++++++++++++ scripts/dashboard/common.cmake | 4 +- 3 files changed, 51 insertions(+), 2 deletions(-) create mode 100644 scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-serial.cmake diff --git a/.github/workflows/everything.yml b/.github/workflows/everything.yml index a34d758595..ea3e35d732 100644 --- a/.github/workflows/everything.yml +++ b/.github/workflows/everything.yml @@ -148,6 +148,10 @@ jobs: shared: static parallel: ompi constrains: build_only + - os: ubuntu20.04 + compiler: gcc8 + shared: static + parallel: serial steps: - uses: actions/checkout@v3 with: diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-serial.cmake new file mode 100644 index 0000000000..2660945304 --- /dev/null +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-serial.cmake @@ -0,0 +1,45 @@ +set(ENV{CC} gcc) +set(ENV{CXX} g++) + +set(dashboard_cache " +BUILD_SHARED_LIBS=OFF +CMAKE_BUILD_TYPE:STRING=Release + +ADIOS2_BUILD_EXAMPLES:BOOL=OFF +ADIOS2_USE_AWSSDK:STRING=OFF +ADIOS2_USE_Blosc2:STRING=OFF +ADIOS2_USE_Blosc:BOOL=OFF +ADIOS2_USE_BP5:STRING=OFF +ADIOS2_USE_BZip2:BOOL=OFF +ADIOS2_USE_Catalyst:STRING=OFF +ADIOS2_USE_CUDA:STRING=OFF +ADIOS2_USE_DAOS:STRING=OFF +ADIOS2_USE_DataMan:BOOL=OFF +ADIOS2_USE_DataSpaces:STRING=OFF +ADIOS2_USE_Fortran:BOOL=OFF +ADIOS2_USE_HDF5:BOOL=OFF +ADIOS2_USE_HDF5_VOL:STRING=OFF +ADIOS2_USE_IME:STRING=OFF +ADIOS2_USE_Kokkos:STRING=OFF +ADIOS2_USE_LIBPRESSIO:STRING=OFF +ADIOS2_USE_MGARD:STRING=OFF +ADIOS2_USE_MHS:STRING=OFF +ADIOS2_USE_MPI:BOOL=OFF +ADIOS2_USE_PNG:BOOL=OFF +ADIOS2_USE_Python:BOOL=OFF +ADIOS2_USE_SSC:BOOL=OFF +ADIOS2_USE_SST:BOOL=OFF +ADIOS2_USE_SZ:BOOL=OFF +ADIOS2_USE_ZeroMQ:STRING=OFF +ADIOS2_USE_ZFP:BOOL=OFF + +CMAKE_C_COMPILER_LAUNCHER=ccache +CMAKE_CXX_COMPILER_LAUNCHER=ccache +CMAKE_C_FLAGS:STRING=-Wall +CMAKE_CXX_FLAGS:STRING=-Wall +CMAKE_Fortran_FLAGS:STRING=-Wall +") + +set(CTEST_CMAKE_GENERATOR "Ninja") +list(APPEND CTEST_UPDATE_NOTES_FILES "${CMAKE_CURRENT_LIST_FILE}") +include(${CMAKE_CURRENT_LIST_DIR}/ci-common.cmake) diff --git a/scripts/dashboard/common.cmake b/scripts/dashboard/common.cmake index 012d2cf11e..cbdeb4f101 100644 --- a/scripts/dashboard/common.cmake +++ b/scripts/dashboard/common.cmake @@ -443,7 +443,7 @@ if(dashboard_do_build) if(COMMAND dashboard_hook_build) dashboard_hook_build() endif() - message("Calling ctest_build") + message("Calling ctest_build with CTEST_BUILD_FLAGS: " ${CTEST_BUILD_FLAGS}) ctest_build( NUMBER_WARNINGS ctest_build_num_warnings ) @@ -458,7 +458,7 @@ if(dashboard_do_test) if(COMMAND dashboard_hook_test) dashboard_hook_test() endif() - message("Calling ctest_test") + message("Calling ctest_test with CTEST_TEST_ARGS: " ${CTEST_TEST_ARGS}) ctest_test(${CTEST_TEST_ARGS} RETURN_VALUE TEST_RESULTS) if(${TEST_RESULTS} EQUAL 0) message("ctest test results return value: ${TEST_RESULTS}") From 26b01718e74cf84c6ff67a902d0b02f93efc775e Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Tue, 15 Aug 2023 21:23:07 -0400 Subject: [PATCH 110/183] operators: fix module library --- CTestCustom.cmake.in | 1 + plugins/engines/CMakeLists.txt | 2 +- plugins/operators/CMakeLists.txt | 2 +- 3 files changed, 3 insertions(+), 2 deletions(-) diff --git a/CTestCustom.cmake.in b/CTestCustom.cmake.in index e118eb3e31..8356e4f57f 100644 --- a/CTestCustom.cmake.in +++ b/CTestCustom.cmake.in @@ -24,6 +24,7 @@ list(APPEND CTEST_CUSTOM_WARNING_EXCEPTION "Warning #20208-D: '.*' is treated as '.*' in device code" "Warning: '.*' is treated as '.*' in device code" ".*was specified as both a system and non-system include directory.*" + "Wunused-command-line-argument" ) list(APPEND CTEST_CUSTOM_COVERAGE_EXCLUDE ".*/thirdparty/.*" diff --git a/plugins/engines/CMakeLists.txt b/plugins/engines/CMakeLists.txt index 2a207abbad..794a57ee95 100644 --- a/plugins/engines/CMakeLists.txt +++ b/plugins/engines/CMakeLists.txt @@ -4,7 +4,7 @@ #------------------------------------------------------------------------------# if(ADIOS2_HAVE_Catalyst) - add_library(ParaViewADIOSInSituEngine + add_library(ParaViewADIOSInSituEngine MODULE ParaViewFidesEngine.cpp) target_link_libraries(ParaViewADIOSInSituEngine PUBLIC diff --git a/plugins/operators/CMakeLists.txt b/plugins/operators/CMakeLists.txt index b115218c0f..44f9a0f2a2 100644 --- a/plugins/operators/CMakeLists.txt +++ b/plugins/operators/CMakeLists.txt @@ -4,7 +4,7 @@ #------------------------------------------------------------------------------# if(ADIOS2_HAVE_Sodium) - add_library(EncryptionOperator + add_library(EncryptionOperator MODULE EncryptionOperator.cpp ) target_link_libraries(EncryptionOperator adios2_core sodium) From e79c75f365c596a52836996796b93498584e7d7e Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Tue, 22 Aug 2023 16:20:02 -0400 Subject: [PATCH 111/183] bp5: remove ADIOS2_USE_BP5 option --- CMakeLists.txt | 8 +- cmake/DetectOptions.cmake | 5 - .../ci-ubuntu20.04-gcc8-static-serial.cmake | 1 - source/adios2/CMakeLists.txt | 51 +++++---- source/adios2/core/IO.cpp | 16 +-- source/adios2/core/Info.cpp | 2 - testing/adios2/engine/bp/CMakeLists.txt | 106 ++++++++---------- testing/adios2/engine/common/CMakeLists.txt | 10 +- .../engine/staging-common/CMakeLists.txt | 34 +++--- thirdparty/CMakeLists.txt | 40 ++++--- 10 files changed, 116 insertions(+), 157 deletions(-) diff --git a/CMakeLists.txt b/CMakeLists.txt index 638cc06fed..8836679e75 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -154,7 +154,6 @@ adios_option(DataMan "Enable support for DataMan" AUTO) adios_option(DataSpaces "Enable support for DATASPACES" AUTO) adios_option(MHS "Enable support for MHS" AUTO) adios_option(SST "Enable support for SST" AUTO) -adios_option(BP5 "Enable support for BP5" AUTO) adios_option(ZeroMQ "Enable support for ZeroMQ" AUTO) adios_option(HDF5 "Enable support for the HDF5 engine" AUTO) adios_option(HDF5_VOL "Enable support for HDF5 ADIOS2 VOL" AUTO) @@ -238,9 +237,10 @@ endif() set(ADIOS2_CONFIG_OPTS - BP5 DataMan DataSpaces HDF5 HDF5_VOL MHS SST Fortran MPI Python Blosc2 - BZip2 LIBPRESSIO MGARD PNG SZ ZFP DAOS IME O_DIRECT Sodium Catalyst SysVShMem UCX ZeroMQ - Profiling Endian_Reverse AWSSDK GPU_Support CUDA Kokkos Kokkos_CUDA Kokkos_HIP Kokkos_SYCL + DataMan DataSpaces HDF5 HDF5_VOL MHS SST Fortran MPI Python Blosc2 BZip2 + LIBPRESSIO MGARD PNG SZ ZFP DAOS IME O_DIRECT Sodium Catalyst SysVShMem UCX + ZeroMQ Profiling Endian_Reverse AWSSDK GPU_Support CUDA Kokkos Kokkos_CUDA + Kokkos_HIP Kokkos_SYCL ) GenerateADIOSHeaderConfig(${ADIOS2_CONFIG_OPTS}) diff --git a/cmake/DetectOptions.cmake b/cmake/DetectOptions.cmake index c74706d0c5..4044cb822f 100644 --- a/cmake/DetectOptions.cmake +++ b/cmake/DetectOptions.cmake @@ -485,11 +485,6 @@ if(DAOS_FOUND) set(ADIOS2_HAVE_DAOS TRUE) endif() -# BP5 -if(ADIOS2_USE_BP5) - set(ADIOS2_HAVE_BP5 TRUE) -endif() - #SysV IPC if(UNIX) include(CheckSymbolExists) diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-serial.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-serial.cmake index 2660945304..4de978d424 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-serial.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-serial.cmake @@ -9,7 +9,6 @@ ADIOS2_BUILD_EXAMPLES:BOOL=OFF ADIOS2_USE_AWSSDK:STRING=OFF ADIOS2_USE_Blosc2:STRING=OFF ADIOS2_USE_Blosc:BOOL=OFF -ADIOS2_USE_BP5:STRING=OFF ADIOS2_USE_BZip2:BOOL=OFF ADIOS2_USE_Catalyst:STRING=OFF ADIOS2_USE_CUDA:STRING=OFF diff --git a/source/adios2/CMakeLists.txt b/source/adios2/CMakeLists.txt index eb55d7b1e4..225afb3962 100644 --- a/source/adios2/CMakeLists.txt +++ b/source/adios2/CMakeLists.txt @@ -50,6 +50,15 @@ add_library(adios2_core engine/bp4/BP4Reader.cpp engine/bp4/BP4Reader.tcc engine/bp4/BP4Writer.cpp engine/bp4/BP4Writer.tcc + engine/bp5/BP5Engine.cpp + engine/bp5/BP5Reader.cpp + engine/bp5/BP5Reader.tcc + engine/bp5/BP5Writer.cpp + engine/bp5/BP5Writer_EveryoneWrites_Async.cpp + engine/bp5/BP5Writer.tcc + engine/bp5/BP5Writer_TwoLevelShm_Async.cpp + engine/bp5/BP5Writer_TwoLevelShm.cpp + engine/skeleton/SkeletonReader.cpp engine/skeleton/SkeletonReader.tcc engine/skeleton/SkeletonWriter.cpp engine/skeleton/SkeletonWriter.tcc @@ -61,12 +70,17 @@ add_library(adios2_core engine/plugin/PluginEngine.cpp engine/plugin/PluginEngineInterface.cpp operator/plugin/PluginOperator.cpp operator/plugin/PluginOperatorInterface.cpp + #toolkit + toolkit/burstbuffer/FileDrainer.cpp + toolkit/burstbuffer/FileDrainerSingleThread.cpp + toolkit/format/buffer/Buffer.cpp toolkit/format/buffer/BufferV.cpp - toolkit/format/buffer/malloc/MallocV.cpp toolkit/format/buffer/chunk/ChunkV.cpp + toolkit/format/buffer/ffs/BufferFFS.cpp toolkit/format/buffer/heap/BufferSTL.cpp + toolkit/format/buffer/malloc/MallocV.cpp toolkit/format/bp/BPBase.cpp toolkit/format/bp/BPBase.tcc toolkit/format/bp/BPSerializer.cpp toolkit/format/bp/BPSerializer.tcc @@ -80,6 +94,11 @@ add_library(adios2_core toolkit/format/bp/bp4/BP4Deserializer.cpp toolkit/format/bp/bp4/BP4Deserializer.tcc toolkit/format/bp/bpBackCompatOperation/compress/BPBackCompatBlosc.cpp + toolkit/format/bp5/BP5Base.cpp + toolkit/format/bp5/BP5Deserializer.cpp + toolkit/format/bp5/BP5Deserializer.tcc + toolkit/format/bp5/BP5Serializer.cpp + toolkit/profiling/iochrono/Timer.cpp toolkit/profiling/iochrono/IOChrono.cpp @@ -104,9 +123,6 @@ add_library(adios2_core toolkit/aggregator/mpi/MPIAggregator.cpp toolkit/aggregator/mpi/MPIChain.cpp toolkit/aggregator/mpi/MPIShmChain.cpp - - toolkit/burstbuffer/FileDrainer.cpp - toolkit/burstbuffer/FileDrainerSingleThread.cpp ) set_property(TARGET adios2_core PROPERTY EXPORT_NAME core) set_property(TARGET adios2_core PROPERTY OUTPUT_NAME adios2${ADIOS2_LIBRARY_SUFFIX}_core) @@ -145,8 +161,14 @@ target_include_directories(adios2_core $ $ ) -target_link_libraries(adios2_core PRIVATE adios2sys_interface adios2::thirdparty::pugixml - adios2::thirdparty::yaml-cpp adios2::thirdparty::nlohmann_json adios2::thirdparty::perfstubs-interface) +target_link_libraries(adios2_core PRIVATE + adios2sys_interface + adios2::thirdparty::pugixml + adios2::thirdparty::yaml-cpp + adios2::thirdparty::nlohmann_json + adios2::thirdparty::perfstubs-interface + ffs::ffs +) target_link_libraries(adios2_core PUBLIC ${CMAKE_THREAD_LIBS_INIT}) target_compile_features(adios2_core PUBLIC "$") @@ -165,24 +187,7 @@ if (ADIOS2_HAVE_SST) target_link_libraries(adios2_core PRIVATE EVPath::EVPath) add_subdirectory(toolkit/remote) endif() - -if (ADIOS2_HAVE_BP5) - target_sources(adios2_core PRIVATE - engine/bp5/BP5Engine.cpp - engine/bp5/BP5Reader.cpp engine/bp5/BP5Reader.tcc - engine/bp5/BP5Writer.cpp engine/bp5/BP5Writer.tcc engine/bp5/BP5Writer_TwoLevelShm.cpp engine/bp5/BP5Writer_TwoLevelShm_Async.cpp engine/bp5/BP5Writer_EveryoneWrites_Async.cpp - ) -endif() -if (ADIOS2_HAVE_BP5 OR ADIOS2_HAVE_SST) - target_sources(adios2_core PRIVATE - toolkit/format/buffer/ffs/BufferFFS.cpp - toolkit/format/bp5/BP5Base.cpp - toolkit/format/bp5/BP5Serializer.cpp - toolkit/format/bp5/BP5Deserializer.cpp toolkit/format/bp5/BP5Deserializer.tcc - ) - target_link_libraries(adios2_core PRIVATE ffs::ffs) -endif() if(ADIOS2_HAVE_DAOS) target_sources(adios2_core PRIVATE toolkit/transport/file/FileDaos.cpp diff --git a/source/adios2/core/IO.cpp b/source/adios2/core/IO.cpp index 89764aa71b..1b99463b54 100644 --- a/source/adios2/core/IO.cpp +++ b/source/adios2/core/IO.cpp @@ -22,10 +22,8 @@ #include "adios2/engine/bp3/BP3Writer.h" #include "adios2/engine/bp4/BP4Reader.h" #include "adios2/engine/bp4/BP4Writer.h" -#ifdef ADIOS2_HAVE_BP5 #include "adios2/engine/bp5/BP5Reader.h" #include "adios2/engine/bp5/BP5Writer.h" -#endif #include "adios2/engine/inline/InlineReader.h" #include "adios2/engine/inline/InlineWriter.h" #include "adios2/engine/mhs/MhsReader.h" @@ -68,14 +66,7 @@ namespace std::unordered_map Factory = { {"bp3", {IO::MakeEngine, IO::MakeEngine}}, {"bp4", {IO::MakeEngine, IO::MakeEngine}}, - {"bp5", -#ifdef ADIOS2_HAVE_BP5 - {IO::MakeEngine, IO::MakeEngine} -#else - IO::NoEngineEntry("ERROR: this version didn't compile with " - "BP5 library, can't use BP5 engine\n") -#endif - }, + {"bp5", {IO::MakeEngine, IO::MakeEngine}}, {"dataman", #ifdef ADIOS2_HAVE_DATAMAN {IO::MakeEngine, IO::MakeEngine} @@ -576,13 +567,8 @@ Engine &IO::Open(const std::string &name, const Mode mode, helper::Comm comm) } else { -#ifdef ADIOS2_HAVE_BP5 // File default for writing: BP5 engineTypeLC = "bp5"; -#else - // File default for writing: BP4 - engineTypeLC = "bp4"; -#endif } } diff --git a/source/adios2/core/Info.cpp b/source/adios2/core/Info.cpp index f6fab45756..39686b8e0f 100644 --- a/source/adios2/core/Info.cpp +++ b/source/adios2/core/Info.cpp @@ -25,9 +25,7 @@ const char adios2_version_str[] = ADIOS2_VERSION_STR; static const char *const engines[] = {"BP3", "BP4", -#ifdef ADIOS2_HAVE_BP5 "BP5", -#endif #ifdef ADIOS2_HAVE_HDF5 "HDF5", #endif diff --git a/testing/adios2/engine/bp/CMakeLists.txt b/testing/adios2/engine/bp/CMakeLists.txt index 196126d30a..a57f950a23 100644 --- a/testing/adios2/engine/bp/CMakeLists.txt +++ b/testing/adios2/engine/bp/CMakeLists.txt @@ -32,12 +32,9 @@ macro(bp4_bp5_gtest_add_tests_helper testname mpi) gtest_add_tests_helper(${testname} ${mpi} BP Engine.BP. .BP4 WORKING_DIRECTORY ${BP4_DIR} EXTRA_ARGS "BP4" ) - - if(ADIOS2_HAVE_BP5) - gtest_add_tests_helper(${testname} ${mpi} BP Engine.BP. .BP5 - WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" - ) - endif() + gtest_add_tests_helper(${testname} ${mpi} BP Engine.BP. .BP5 + WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" + ) endmacro() macro(bp_gtest_add_tests_helper testname mpi) @@ -47,29 +44,24 @@ macro(bp_gtest_add_tests_helper testname mpi) gtest_add_tests_helper(${testname} ${mpi} BP Engine.BP. .BP4 WORKING_DIRECTORY ${BP4_DIR} EXTRA_ARGS "BP4" ) - - if(ADIOS2_HAVE_BP5) - gtest_add_tests_helper(${testname} ${mpi} BP Engine.BP. .BP5 - WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" - ) - endif() + gtest_add_tests_helper(${testname} ${mpi} BP Engine.BP. .BP5 + WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" + ) endmacro() macro(async_gtest_add_tests_helper testname mpi) - if(ADIOS2_HAVE_BP5) - gtest_add_tests_helper(${testname} ${mpi} BP Engine.BP. .Async.BP5.TLS.Guided - WORKING_DIRECTORY ${BP5_ASYNC_DIR}/tls-guided EXTRA_ARGS "BP5" "AggregationType=TwoLevelShm,AsyncWrite=Guided" - ) - gtest_add_tests_helper(${testname} ${mpi} BP Engine.BP. .Async.BP5.TLS.Naive - WORKING_DIRECTORY ${BP5_ASYNC_DIR}/tls-naive EXTRA_ARGS "BP5" "AggregationType=TwoLevelShm,AsyncWrite=Naive" - ) - gtest_add_tests_helper(${testname} ${mpi} BP Engine.BP. .Async.BP5.EWS.Guided - WORKING_DIRECTORY ${BP5_ASYNC_DIR}/ews-guided EXTRA_ARGS "BP5" "AggregationType=EveryoneWritesSerial,AsyncWrite=Guided" - ) - gtest_add_tests_helper(${testname} ${mpi} BP Engine.BP. .Async.BP5.EWS.Naive - WORKING_DIRECTORY ${BP5_ASYNC_DIR}/ews-naive EXTRA_ARGS "BP5" "AggregationType=EveryoneWritesSerial,AsyncWrite=Naive" - ) - endif() + gtest_add_tests_helper(${testname} ${mpi} BP Engine.BP. .Async.BP5.TLS.Guided + WORKING_DIRECTORY ${BP5_ASYNC_DIR}/tls-guided EXTRA_ARGS "BP5" "AggregationType=TwoLevelShm,AsyncWrite=Guided" + ) + gtest_add_tests_helper(${testname} ${mpi} BP Engine.BP. .Async.BP5.TLS.Naive + WORKING_DIRECTORY ${BP5_ASYNC_DIR}/tls-naive EXTRA_ARGS "BP5" "AggregationType=TwoLevelShm,AsyncWrite=Naive" + ) + gtest_add_tests_helper(${testname} ${mpi} BP Engine.BP. .Async.BP5.EWS.Guided + WORKING_DIRECTORY ${BP5_ASYNC_DIR}/ews-guided EXTRA_ARGS "BP5" "AggregationType=EveryoneWritesSerial,AsyncWrite=Guided" + ) + gtest_add_tests_helper(${testname} ${mpi} BP Engine.BP. .Async.BP5.EWS.Naive + WORKING_DIRECTORY ${BP5_ASYNC_DIR}/ews-naive EXTRA_ARGS "BP5" "AggregationType=EveryoneWritesSerial,AsyncWrite=Naive" + ) endmacro() if(ADIOS2_HAVE_Fortran) @@ -81,12 +73,9 @@ if(ADIOS2_HAVE_Fortran) gtest_add_tests_helper_Fortran(${testname} ${mpi} BP Engine.BP. .BP4 ${BP4_DIR} "BP4" ) - - if(ADIOS2_HAVE_BP5) - gtest_add_tests_helper_Fortran(${testname} ${mpi} BP Engine.BP. .BP5 - ${BP5_DIR} "BP5" - ) - endif() + gtest_add_tests_helper_Fortran(${testname} ${mpi} BP Engine.BP. .BP5 + ${BP5_DIR} "BP5" + ) endmacro() else() macro(bp_gtest_add_tests_helper_Fortran testname mpi) @@ -115,16 +104,14 @@ bp_gtest_add_tests_helper(WriteReadVector MPI_ALLOW) bp_gtest_add_tests_helper(WriteReadAttributesMultirank MPI_ALLOW) bp_gtest_add_tests_helper(LargeMetadata MPI_ALLOW) -if(ADIOS2_HAVE_BP5) - set(BP5LargeMeta "Engine.BP.BPLargeMetadata.BPWrite1D_LargeMetadata.BP5.Serial") - - if(ADIOS2_HAVE_MPI) - list(APPEND BP5LargeMeta "Engine.BP.BPLargeMetadata.BPWrite1D_LargeMetadata.BP5.MPI" "Engine.BP.BPLargeMetadata.ManyLongStrings.BP5.MPI") - endif() +set(BP5LargeMeta "Engine.BP.BPLargeMetadata.BPWrite1D_LargeMetadata.BP5.Serial") - set_tests_properties(${BP5LargeMeta} PROPERTIES RUN_SERIAL TRUE) +if(ADIOS2_HAVE_MPI) + list(APPEND BP5LargeMeta "Engine.BP.BPLargeMetadata.BPWrite1D_LargeMetadata.BP5.MPI" "Engine.BP.BPLargeMetadata.ManyLongStrings.BP5.MPI") endif() +set_tests_properties(${BP5LargeMeta} PROPERTIES RUN_SERIAL TRUE) + bp_gtest_add_tests_helper(WriteMemorySelectionRead MPI_ALLOW) bp_gtest_add_tests_helper(WriteReadLocalVariables MPI_ALLOW) bp_gtest_add_tests_helper(WriteReadLocalVariablesSel MPI_ALLOW) @@ -158,20 +145,18 @@ if(ADIOS2_HAVE_MPI) endif() # BP5 only for now -if(ADIOS2_HAVE_BP5) - gtest_add_tests_helper(ParameterSelectSteps MPI_ALLOW BP Engine.BP. .BP5 - WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" - ) - gtest_add_tests_helper(AppendAfterSteps MPI_ALLOW BP Engine.BP. .BP5 - WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" - ) - gtest_add_tests_helper(DirectIO MPI_NONE BP Engine.BP. .BP5 - WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" - ) - gtest_add_tests_helper(ReadMultithreaded MPI_NONE BP Engine.BP. .BP5 - WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" - ) -endif(ADIOS2_HAVE_BP5) +gtest_add_tests_helper(ParameterSelectSteps MPI_ALLOW BP Engine.BP. .BP5 + WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" +) +gtest_add_tests_helper(AppendAfterSteps MPI_ALLOW BP Engine.BP. .BP5 + WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" +) +gtest_add_tests_helper(DirectIO MPI_NONE BP Engine.BP. .BP5 + WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" +) +gtest_add_tests_helper(ReadMultithreaded MPI_NONE BP Engine.BP. .BP5 + WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" +) # BP3 only for now gtest_add_tests_helper(WriteNull MPI_ALLOW BP Engine.BP. .BP3 @@ -223,15 +208,12 @@ if(ADIOS2_HAVE_CUDA OR ADIOS2_HAVE_Kokkos_CUDA) gtest_add_tests_helper(SelectionsCuda MPI_ALLOW BP Engine.BP. .BP4 WORKING_DIRECTORY ${BP4_DIR} EXTRA_ARGS "BP4" ) - - if(ADIOS2_HAVE_BP5) - gtest_add_tests_helper(WriteReadCuda MPI_ALLOW BP Engine.BP. .BP5 - WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" - ) - gtest_add_tests_helper(SelectionsCuda MPI_ALLOW BP Engine.BP. .BP5 - WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" - ) - endif() + gtest_add_tests_helper(WriteReadCuda MPI_ALLOW BP Engine.BP. .BP5 + WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" + ) + gtest_add_tests_helper(SelectionsCuda MPI_ALLOW BP Engine.BP. .BP5 + WORKING_DIRECTORY ${BP5_DIR} EXTRA_ARGS "BP5" + ) foreach(tgt ${Test.Engine.BP.WriteReadCuda-TARGETS}) target_sources(${tgt} PRIVATE operations/CudaRoutines.cu) diff --git a/testing/adios2/engine/common/CMakeLists.txt b/testing/adios2/engine/common/CMakeLists.txt index 72db89c08d..e19392d424 100644 --- a/testing/adios2/engine/common/CMakeLists.txt +++ b/testing/adios2/engine/common/CMakeLists.txt @@ -43,13 +43,11 @@ if(NOT MSVC) ) endif() -if (ADIOS2_HAVE_BP5) - gtest_add_tests_helper(Common MPI_ONLY "" Engine. .BP5 - EXTRA_ARGS "BP5" "1") -endif() +gtest_add_tests_helper(Common MPI_ONLY "" Engine. .BP5 + EXTRA_ARGS "BP5" "1") - gtest_add_tests_helper(Common MPI_ONLY "" Engine. .BP3 - EXTRA_ARGS "BP3" "1") +gtest_add_tests_helper(Common MPI_ONLY "" Engine. .BP3 + EXTRA_ARGS "BP3" "1") #if(ADIOS2_HAVE_DataMan) # gtest_add_tests_helper(Common MPI_ONLY "" Engine. .DataMan diff --git a/testing/adios2/engine/staging-common/CMakeLists.txt b/testing/adios2/engine/staging-common/CMakeLists.txt index 9fdcea85c7..a5a3f09056 100644 --- a/testing/adios2/engine/staging-common/CMakeLists.txt +++ b/testing/adios2/engine/staging-common/CMakeLists.txt @@ -233,24 +233,22 @@ if(NOT WIN32) # not on windows endif() # BP5 tests -if(ADIOS2_HAVE_BP5) - set (BP5_TESTS ${ALL_SIMPLE_TESTS} ${SPECIAL_TESTS} ${BP5File_ONLY_TESTS}) - # Delayed reader not worth testing on file engines - list (FILTER BP5_TESTS EXCLUDE REGEX "DelayedReader") - # Discard not a feature of BP5 - list (FILTER BP5_TESTS EXCLUDE REGEX ".*DiscardWriter.1x1") - # PreciousTimestep not a feature of BP5 - list (FILTER BP5_TESTS EXCLUDE REGEX ".*PreciousTimestep") - # LatestTimestep not a feature of BP5 - list (FILTER BP5_TESTS EXCLUDE REGEX ".*LatestReader") - # KillWriter fails with BP5 - list (FILTER BP5_TESTS EXCLUDE REGEX ".*KillWriter") - # KillReaders We swear this isn't necessary for BP5 streaming - list (FILTER BP5_TESTS EXCLUDE REGEX ".*KillReaders") - foreach(test ${BP5_TESTS}) - add_common_test(${test} BP5) - endforeach() -endif() +set (BP5_TESTS ${ALL_SIMPLE_TESTS} ${SPECIAL_TESTS} ${BP5File_ONLY_TESTS}) +# Delayed reader not worth testing on file engines +list (FILTER BP5_TESTS EXCLUDE REGEX "DelayedReader") +# Discard not a feature of BP5 +list (FILTER BP5_TESTS EXCLUDE REGEX ".*DiscardWriter.1x1") +# PreciousTimestep not a feature of BP5 +list (FILTER BP5_TESTS EXCLUDE REGEX ".*PreciousTimestep") +# LatestTimestep not a feature of BP5 +list (FILTER BP5_TESTS EXCLUDE REGEX ".*LatestReader") +# KillWriter fails with BP5 +list (FILTER BP5_TESTS EXCLUDE REGEX ".*KillWriter") +# KillReaders We swear this isn't necessary for BP5 streaming +list (FILTER BP5_TESTS EXCLUDE REGEX ".*KillReaders") +foreach(test ${BP5_TESTS}) + add_common_test(${test} BP5) +endforeach() # diff --git a/thirdparty/CMakeLists.txt b/thirdparty/CMakeLists.txt index 750abed0b8..6f47abea1f 100644 --- a/thirdparty/CMakeLists.txt +++ b/thirdparty/CMakeLists.txt @@ -105,33 +105,31 @@ cmake_dependent_option(ADIOS2_USE_EXTERNAL_ENET "NOT ADIOS2_USE_EXTERNAL_EVPATH" OFF ) -if(ADIOS2_HAVE_SST OR ADIOS2_HAVE_BP5) - if(NOT ADIOS2_USE_EXTERNAL_EVPATH) - if(NOT ADIOS2_USE_EXTERNAL_ATL) - add_subdirectory(atl) - endif() - find_package(atl REQUIRED) - - if(NOT ADIOS2_USE_EXTERNAL_FFS) - if(NOT ADIOS2_USE_EXTERNAL_DILL) - add_subdirectory(dill) - endif() - find_package(dill REQUIRED) +if(NOT ADIOS2_USE_EXTERNAL_EVPATH) + if(NOT ADIOS2_USE_EXTERNAL_ATL) + add_subdirectory(atl) + endif() + find_package(atl REQUIRED) - add_subdirectory(ffs) + if(NOT ADIOS2_USE_EXTERNAL_FFS) + if(NOT ADIOS2_USE_EXTERNAL_DILL) + add_subdirectory(dill) endif() - find_package(ffs REQUIRED) + find_package(dill REQUIRED) - if(NOT ADIOS2_USE_EXTERNAL_ENET) - add_subdirectory(enet) - endif() - find_package(enet REQUIRED) + add_subdirectory(ffs) + endif() + find_package(ffs REQUIRED) - add_subdirectory(EVPath) + if(NOT ADIOS2_USE_EXTERNAL_ENET) + add_subdirectory(enet) endif() - find_package(EVPath REQUIRED) - adios2_add_thirdparty_target(EVPath EVPath::EVPath) + find_package(enet REQUIRED) + + add_subdirectory(EVPath) endif() +find_package(EVPath REQUIRED) +adios2_add_thirdparty_target(EVPath EVPath::EVPath) # Keep this at the end so we see the verbose messages at least once set(ADIOS2_THIRDPARTY_VERBOSE_DISABLE TRUE CACHE INTERNAL "" FORCE) From 56f06b15567c00d867551b0d42b84e2df431e46c Mon Sep 17 00:00:00 2001 From: Junmin Gu Date: Wed, 23 Aug 2023 11:30:59 -0400 Subject: [PATCH 112/183] removed comments and cleaned up more code --- .../toolkit/interop/hdf5/HDF5Common.cpp | 57 +++---------------- .../adios2/toolkit/interop/hdf5/HDF5Common.h | 17 +++--- 2 files changed, 14 insertions(+), 60 deletions(-) diff --git a/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp b/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp index 5dc188bffb..d19b78e92b 100644 --- a/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp +++ b/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp @@ -295,7 +295,6 @@ void HDF5Common::WriteAdiosSteps() else attr = H5Aopen(m_FileId, ATTRNAME_NUM_STEPS.c_str(), H5P_DEFAULT); - // unsigned int totalAdiosSteps = m_CurrentAdiosStep + 1; size_t totalAdiosSteps = m_CurrentAdiosStep + 1; if (m_GroupId < 0) @@ -360,7 +359,6 @@ void HDF5Common::ReadAllVariables(core::IO &io) } GetNumAdiosSteps(); - // unsigned int i = 0; for (size_t i = 0; i < m_NumAdiosSteps; i++) { @@ -369,7 +367,7 @@ void HDF5Common::ReadAllVariables(core::IO &io) } void HDF5Common::FindVarsFromH5(core::IO &io, hid_t top_id, const char *gname, const char *heritage, - unsigned int ts) + size_t ts) { // int i = 0; // std::string stepStr; @@ -431,44 +429,9 @@ void HDF5Common::FindVarsFromH5(core::IO &io, hid_t top_id, const char *gname, c } } } -/* -void HDF5Common::ReadNativeGroup(hid_t hid, IO& io) -{ -H5G_info_t group_info; -herr_t result = H5Gget_info(hid, &group_info); - -if (result < 0) { - // error - helper::Throw( "Toolkit", "interop::hdf5::HDF5Common", -"ReadNativeGroup", "Unable to get group info"); -} - -if (group_info.nlinks == 0) { - return; -} - -char tmpstr[1024]; - -hsize_t idx; -for (idx=0; idx( "Toolkit", "interop::hdf5::HDF5Common", -"ReadNativeGroup", "unable to get type info of idx"+idx); - } - - - ssize_t curr= H5Gget_objname_by_idx(hid, idx, tmpstr, sizeof(tmpstr)); - if (curr > 0) { // got a name - std::cout<<" ... printing a name: "< 0) { + herr_t ret = H5Gget_num_objs(gid, &numObj); if (ret >= 0) { @@ -512,12 +475,9 @@ void HDF5Common::ReadVariables(unsigned int ts, core::IO &io) } } } - /// H5Gclose(gid); - ///} } -void HDF5Common::AddSingleString(core::IO &io, std::string const &name, hid_t datasetId, - unsigned int ts) +void HDF5Common::AddSingleString(core::IO &io, std::string const &name, hid_t datasetId, size_t ts) { try { @@ -542,8 +502,7 @@ void HDF5Common::AddSingleString(core::IO &io, std::string const &name, hid_t da } } -void HDF5Common::AddVarString(core::IO &io, std::string const &name, hid_t datasetId, - unsigned int ts) +void HDF5Common::AddVarString(core::IO &io, std::string const &name, hid_t datasetId, size_t ts) { core::Variable *v = io.InquireVariable(name); if (v != NULL) @@ -560,7 +519,6 @@ void HDF5Common::AddVarString(core::IO &io, std::string const &name, hid_t datas H5Sget_simple_extent_dims(dspace, dims.data(), NULL); H5Sclose(dspace); - // if ( (ndims > 1) || ( (ndims == 1) && (dims[0] > 1) ) ) { if ((ndims > 0)) { bool isSingleElement = true; @@ -625,7 +583,7 @@ void HDF5Common::AddVarString(core::IO &io, std::string const &name, hid_t datas } template -void HDF5Common::AddVar(core::IO &io, std::string const &name, hid_t datasetId, unsigned int ts) +void HDF5Common::AddVar(core::IO &io, std::string const &name, hid_t datasetId, size_t ts) { core::Variable *v = io.InquireVariable(name); if (NULL == v) @@ -690,7 +648,7 @@ void HDF5Common::AddVar(core::IO &io, std::string const &name, hid_t datasetId, } void HDF5Common::CreateVar(core::IO &io, hid_t datasetId, std::string const &nameSuggested, - unsigned int ts) + size_t ts) { std::string name; ReadADIOSName(datasetId, name); @@ -823,7 +781,6 @@ void HDF5Common::SetAdiosStep(size_t step) GetNumAdiosSteps(); - // unsigned int ustep = static_cast(step); if (step >= m_NumAdiosSteps) helper::Throw("Toolkit", "interop::hdf5::HDF5Common", "SetAdiosStep", diff --git a/source/adios2/toolkit/interop/hdf5/HDF5Common.h b/source/adios2/toolkit/interop/hdf5/HDF5Common.h index 836d3ed27e..91cfac34b8 100644 --- a/source/adios2/toolkit/interop/hdf5/HDF5Common.h +++ b/source/adios2/toolkit/interop/hdf5/HDF5Common.h @@ -172,30 +172,28 @@ class HDF5Common void ReadNativeAttrToIO(core::IO &io, hid_t datasetId, std::string const &pathFromRoot); - // void SetAdiosStep(int ts); void SetAdiosStep(size_t ts); size_t GetNumAdiosSteps(); size_t GetAdiosStep() const; void WriteAdiosSteps(); - void ReadVariables(unsigned int ts, core::IO &io); - void FindVarsFromH5(core::IO &io, hid_t gid, const char *name, const char *heritage, - unsigned int ts); + void ReadVariables(size_t ts, core::IO &io); + void FindVarsFromH5(core::IO &io, hid_t gid, const char *name, const char *heritage, size_t ts); void ReadAllVariables(core::IO &io); void ReadStringScalarDataset(hid_t dataSetId, std::string &result); hid_t GetTypeStringScalar(const std::string &input); - void CreateVar(core::IO &io, hid_t h5Type, std::string const &name, unsigned int ts); + void CreateVar(core::IO &io, hid_t h5Type, std::string const &name, size_t ts); template - void AddVar(core::IO &io, std::string const &name, hid_t datasetId, unsigned int ts); + void AddVar(core::IO &io, std::string const &name, hid_t datasetId, size_t ts); // adios only allows a scalar string var - void AddSingleString(core::IO &io, std::string const &name, hid_t datasetId, unsigned int ts); + void AddSingleString(core::IO &io, std::string const &name, hid_t datasetId, size_t ts); // decompose array string vars - void AddVarString(core::IO &io, std::string const &name, hid_t datasetId, unsigned int ts); + void AddVarString(core::IO &io, std::string const &name, hid_t datasetId, size_t ts); template void AddNonStringAttribute(core::IO &io, std::string const &attrName, hid_t attrId, @@ -213,7 +211,6 @@ class HDF5Common hid_t m_DefH5TypeComplexFloat; hid_t m_DefH5TypeBlockStat; - // unsigned int m_CurrentAdiosStep = 0; size_t m_CurrentAdiosStep = 0; void CheckWriteGroup(); @@ -249,7 +246,7 @@ class HDF5Common std::vector &, std::vector &); bool m_WriteMode = false; - // unsigned int m_NumAdiosSteps = 0; + size_t m_NumAdiosSteps = 0; MPI_API const *m_MPI = nullptr; From 52600da3d6e78e74882b82816911c7c0d6016a22 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Tue, 22 Aug 2023 19:12:12 -0400 Subject: [PATCH 113/183] cmake: fix ffs dependency --- cmake/adios2-config-common.cmake.in | 6 ++++++ cmake/adios2-config.cmake.in | 9 ++++++--- source/adios2/CMakeLists.txt | 4 ++-- thirdparty/CMakeLists.txt | 19 ++++++++++--------- 4 files changed, 24 insertions(+), 14 deletions(-) diff --git a/cmake/adios2-config-common.cmake.in b/cmake/adios2-config-common.cmake.in index 97e98e54b4..0d536e8904 100644 --- a/cmake/adios2-config-common.cmake.in +++ b/cmake/adios2-config-common.cmake.in @@ -162,6 +162,12 @@ if(NOT @BUILD_SHARED_LIBS@) adios2_add_thirdparty_target(perfstubs-interface) + find_dependency(ffs) + adios2_add_thirdparty_target(ffs) + set_target_properties(adios2::thirdparty::ffs PROPERTIES + INTERFACE_LINK_LIBRARIES ffs::ffs + ) + set(ADIOS2_HAVE_SST @ADIOS2_HAVE_SST@) if(ADIOS2_HAVE_SST) set(ADIOS2_SST_HAVE_LIBFABRIC @ADIOS2_SST_HAVE_LIBFABRIC@) diff --git a/cmake/adios2-config.cmake.in b/cmake/adios2-config.cmake.in index 4bb68c27da..21946d6fd2 100644 --- a/cmake/adios2-config.cmake.in +++ b/cmake/adios2-config.cmake.in @@ -1,12 +1,15 @@ set(_ADIOS2_CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH}) list(INSERT CMAKE_MODULE_PATH 0 "@ADIOS2_SOURCE_DIR@/cmake") +if(NOT @BUILD_SHARED_LIBS@) + set(atl_DIR @atl_DIR@) + set(dill_DIR @dill_DIR@) + set(ffs_DIR @ffs_DIR@) +endif() + if(@ADIOS2_HAVE_SST@) set(EVPath_DIR @EVPath_DIR@) if(NOT @BUILD_SHARED_LIBS@) - set(atl_DIR @atl_DIR@) - set(dill_DIR @dill_DIR@) - set(ffs_DIR @ffs_DIR@) set(enet_DIR @enet_DIR@) endif() endif() diff --git a/source/adios2/CMakeLists.txt b/source/adios2/CMakeLists.txt index 225afb3962..343c70d421 100644 --- a/source/adios2/CMakeLists.txt +++ b/source/adios2/CMakeLists.txt @@ -167,7 +167,7 @@ target_link_libraries(adios2_core PRIVATE adios2::thirdparty::yaml-cpp adios2::thirdparty::nlohmann_json adios2::thirdparty::perfstubs-interface - ffs::ffs + adios2::thirdparty::ffs ) target_link_libraries(adios2_core PUBLIC ${CMAKE_THREAD_LIBS_INIT}) target_compile_features(adios2_core PUBLIC "$") @@ -184,7 +184,7 @@ endif() if (ADIOS2_HAVE_SST) # EVPath-enabled remote file transport target_sources(adios2_core PRIVATE toolkit/remote/remote_common.cpp toolkit/transport/file/FileRemote.cpp) - target_link_libraries(adios2_core PRIVATE EVPath::EVPath) + target_link_libraries(adios2_core PRIVATE adios2::thirdparty::EVPath) add_subdirectory(toolkit/remote) endif() diff --git a/thirdparty/CMakeLists.txt b/thirdparty/CMakeLists.txt index 6f47abea1f..72646b85e9 100644 --- a/thirdparty/CMakeLists.txt +++ b/thirdparty/CMakeLists.txt @@ -105,22 +105,23 @@ cmake_dependent_option(ADIOS2_USE_EXTERNAL_ENET "NOT ADIOS2_USE_EXTERNAL_EVPATH" OFF ) -if(NOT ADIOS2_USE_EXTERNAL_EVPATH) +if(NOT ADIOS2_USE_EXTERNAL_FFS) if(NOT ADIOS2_USE_EXTERNAL_ATL) add_subdirectory(atl) endif() find_package(atl REQUIRED) - if(NOT ADIOS2_USE_EXTERNAL_FFS) - if(NOT ADIOS2_USE_EXTERNAL_DILL) - add_subdirectory(dill) - endif() - find_package(dill REQUIRED) - - add_subdirectory(ffs) + if(NOT ADIOS2_USE_EXTERNAL_DILL) + add_subdirectory(dill) endif() - find_package(ffs REQUIRED) + find_package(dill REQUIRED) + add_subdirectory(ffs) +endif() +find_package(ffs REQUIRED) +adios2_add_thirdparty_target(ffs ffs::ffs) + +if(NOT ADIOS2_USE_EXTERNAL_EVPATH) if(NOT ADIOS2_USE_EXTERNAL_ENET) add_subdirectory(enet) endif() From 1291865cb901fc91d0449d3da23e83cd0eabc7ad Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Wed, 23 Aug 2023 11:42:33 -0400 Subject: [PATCH 114/183] ci: disable MGARD static build --- scripts/ci/cmake/ci-ubuntu20.04-clang6-static-ompi.cmake | 1 + scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-ompi.cmake | 1 + 2 files changed, 2 insertions(+) diff --git a/scripts/ci/cmake/ci-ubuntu20.04-clang6-static-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-clang6-static-ompi.cmake index ce9699c794..b09c2fd203 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-clang6-static-ompi.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-clang6-static-ompi.cmake @@ -19,6 +19,7 @@ ADIOS2_USE_Blosc:BOOL=ON ADIOS2_USE_DataMan:BOOL=ON ADIOS2_USE_Fortran:BOOL=ON ADIOS2_USE_HDF5:BOOL=ON +ADIOS2_USE_MGARD:BOOL=OFF ADIOS2_USE_MPI:BOOL=ON ADIOS2_USE_Python:BOOL=ON ADIOS2_USE_SZ:BOOL=ON diff --git a/scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-ompi.cmake b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-ompi.cmake index 40ba13974d..e3767519f0 100644 --- a/scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-ompi.cmake +++ b/scripts/ci/cmake/ci-ubuntu20.04-gcc8-static-ompi.cmake @@ -19,6 +19,7 @@ ADIOS2_USE_Blosc:BOOL=ON ADIOS2_USE_DataMan:BOOL=ON ADIOS2_USE_Fortran:BOOL=ON ADIOS2_USE_HDF5:BOOL=ON +ADIOS2_USE_MGARD:BOOL=OFF ADIOS2_USE_MPI:BOOL=ON ADIOS2_USE_Python:BOOL=ON ADIOS2_USE_SZ:BOOL=ON From 3502c550084e5d4e2b36855a4d957654e1b7dd07 Mon Sep 17 00:00:00 2001 From: Junmin Gu Date: Wed, 23 Aug 2023 12:31:07 -0400 Subject: [PATCH 115/183] removed a comment --- source/adios2/engine/hdf5/HDF5ReaderP.cpp | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/source/adios2/engine/hdf5/HDF5ReaderP.cpp b/source/adios2/engine/hdf5/HDF5ReaderP.cpp index ffd5d1ab61..0d2a88fc02 100644 --- a/source/adios2/engine/hdf5/HDF5ReaderP.cpp +++ b/source/adios2/engine/hdf5/HDF5ReaderP.cpp @@ -210,7 +210,7 @@ void HDF5ReaderP::UseHDFRead(Variable &variable, T *data, hid_t h5Type) } T *values = data; - // unsigned int ts = 0; + size_t ts = 0; size_t variableStart = variable.m_StepsStart; /* From 031beadad7fdabe15e1e6fb598fea81006184c7e Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Wed, 23 Aug 2023 07:08:00 -0400 Subject: [PATCH 116/183] Reader-side Profiling --- source/adios2/engine/bp5/BP5Reader.cpp | 50 ++++++++++++++++++- source/adios2/engine/bp5/BP5Reader.h | 3 ++ .../toolkit/profiling/iochrono/IOChrono.cpp | 21 ++++++-- .../toolkit/profiling/iochrono/IOChrono.h | 1 + 4 files changed, 71 insertions(+), 4 deletions(-) diff --git a/source/adios2/engine/bp5/BP5Reader.cpp b/source/adios2/engine/bp5/BP5Reader.cpp index 687570fa87..679a0af97a 100644 --- a/source/adios2/engine/bp5/BP5Reader.cpp +++ b/source/adios2/engine/bp5/BP5Reader.cpp @@ -10,6 +10,7 @@ #include "BP5Reader.tcc" #include "adios2/helper/adiosMath.h" // SetWithinLimit +#include "adios2/toolkit/transport/file/FileFStream.h" #include #include @@ -31,7 +32,7 @@ namespace engine BP5Reader::BP5Reader(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("BP5Reader", io, name, mode, std::move(comm)), m_MDFileManager(io, m_Comm), m_DataFileManager(io, m_Comm), m_MDIndexFileManager(io, m_Comm), - m_FileMetaMetadataManager(io, m_Comm), m_ActiveFlagFileManager(io, m_Comm), m_Remote() + m_FileMetaMetadataManager(io, m_Comm), m_ActiveFlagFileManager(io, m_Comm), m_Remote(), m_JSONProfiler(m_Comm) { PERFSTUBS_SCOPED_TIMER("BP5Reader::Open"); Init(); @@ -298,6 +299,7 @@ void BP5Reader::PerformLocalGets() // TP start = NOW(); PERFSTUBS_SCOPED_TIMER("BP5Reader::PerformGets"); + m_JSONProfiler.Start("DataRead"); size_t maxReadSize; // TP startGenerate = NOW(); @@ -317,6 +319,9 @@ void BP5Reader::PerformLocalGets() reqidx = nextRequest; ++nextRequest; } + if (reqidx <= nRequest) { + m_JSONProfiler.AddBytes("dataread", ReadRequests[reqidx].ReadLength); + } return reqidx; }; @@ -406,11 +411,13 @@ void BP5Reader::PerformLocalGets() { Req.DestinationAddr = buf.data(); } + m_JSONProfiler.AddBytes("dataread", Req.ReadLength); ReadData(m_DataFileManager, maxOpenFiles, Req.WriterRank, Req.Timestep, Req.StartOffset, Req.ReadLength, Req.DestinationAddr); m_BP5Deserializer->FinalizeGet(Req, false); } } + m_JSONProfiler.Stop("DataRead"); /*TP end = NOW(); double t1 = DURATION(start, end); double t2 = DURATION(startRead, end); @@ -789,16 +796,19 @@ void BP5Reader::UpdateBuffer(const TimePoint &timeoutInstant, const Seconds &pol if (actualFileSize >= expectedMinFileSize) { + m_JSONProfiler.Start("MetaDataRead"); m_Metadata.Resize(fileFilteredSize, "allocating metadata buffer, " "in call to BP5Reader Open"); size_t mempos = 0; for (auto p : m_FilteredMetadataInfo) { + m_JSONProfiler.AddBytes("metadataread", p.second); m_MDFileManager.ReadFile(m_Metadata.m_Buffer.data() + mempos, p.second, p.first); mempos += p.second; } m_MDFileAlreadyReadSize = expectedMinFileSize; + m_JSONProfiler.Stop("MetaDataRead"); } else { @@ -824,12 +834,15 @@ void BP5Reader::UpdateBuffer(const TimePoint &timeoutInstant, const Seconds &pol if (metametadataFileSize > m_MetaMetaDataFileAlreadyReadSize) { const size_t newMMDSize = metametadataFileSize - m_MetaMetaDataFileAlreadyReadSize; + m_JSONProfiler.Start("MetaMetaDataRead"); + m_JSONProfiler.AddBytes("metametadataread", newMMDSize); m_MetaMetadata.Resize(metametadataFileSize, "(re)allocating meta-meta-data buffer, " "in call to BP5Reader Open"); m_FileMetaMetadataManager.ReadFile(m_MetaMetadata.m_Buffer.data() + m_MetaMetaDataFileAlreadyReadSize, newMMDSize, m_MetaMetaDataFileAlreadyReadSize); m_MetaMetaDataFileAlreadyReadSize += newMMDSize; + m_JSONProfiler.Stop("MetaMetaDataRead"); } } @@ -1194,6 +1207,7 @@ void BP5Reader::DoClose(const int transportIndex) { EndStep(); } + FlushProfiler(); m_DataFileManager.CloseFiles(); m_MDFileManager.CloseFiles(); m_MDIndexFileManager.CloseFiles(); @@ -1204,6 +1218,40 @@ void BP5Reader::DoClose(const int transportIndex) } } +#if defined(_WIN32) +# include +# define getpid() GetCurrentProcessId(); +#elif defined(__linux) || defined(__APPLE__) || defined(__OpenBSD__) || \ + defined(__FreeBSD__) || defined(__NetBSD__) || defined(__DragonFly__) || \ + defined(__CYGWIN__) +#else +# define getpid() (long long) -1; +#endif + +void BP5Reader::FlushProfiler() +{ + + auto LineJSON = m_JSONProfiler.GetRankProfilingJSON({}, {}); + const std::vector profilingJSON(m_JSONProfiler.AggregateProfilingJSON(LineJSON)); + + if (m_RankMPI == 0) + { + std::string profileFileName; + transport::FileFStream profilingJSONStream(m_Comm); + std::string bpBaseName = m_Name; + + auto PID = getpid(); + std::stringstream PIDstr; + PIDstr << std::hex << PID; + // write profile json in /tmp + profileFileName = "/tmp/" + bpBaseName + "_" + PIDstr.str() + "_profiling.json"; + + profilingJSONStream.Open(profileFileName, Mode::Write); + profilingJSONStream.Write(profilingJSON.data(), profilingJSON.size()); + profilingJSONStream.Close(); + } +} + size_t BP5Reader::DoSteps() const { return m_StepsCount; } void BP5Reader::NotifyEngineNoVarsQuery() diff --git a/source/adios2/engine/bp5/BP5Reader.h b/source/adios2/engine/bp5/BP5Reader.h index 7d837184ac..117a05f3c2 100644 --- a/source/adios2/engine/bp5/BP5Reader.h +++ b/source/adios2/engine/bp5/BP5Reader.h @@ -58,6 +58,7 @@ class BP5Reader : public BP5Engine, public Engine MinVarInfo *MinBlocksInfo(const VariableBase &, const size_t Step) const; bool VarShape(const VariableBase &Var, const size_t Step, Dims &Shape) const; bool VariableMinMax(const VariableBase &, const size_t Step, MinMaxStruct &MinMax); + adios2::profiling::JSONProfiler m_JSONProfiler; private: format::BP5Deserializer *m_BP5Deserializer = nullptr; @@ -200,6 +201,8 @@ class BP5Reader : public BP5Engine, public Engine void DoClose(const int transportIndex = -1) final; + void FlushProfiler(); + void GetSyncCommon(VariableBase &variable, void *data); void GetDeferredCommon(VariableBase &variable, void *data); diff --git a/source/adios2/toolkit/profiling/iochrono/IOChrono.cpp b/source/adios2/toolkit/profiling/iochrono/IOChrono.cpp index 40fb740aa2..5c3761f7dc 100644 --- a/source/adios2/toolkit/profiling/iochrono/IOChrono.cpp +++ b/source/adios2/toolkit/profiling/iochrono/IOChrono.cpp @@ -57,6 +57,12 @@ JSONProfiler::JSONProfiler(helper::Comm const &comm) : m_Comm(comm) AddTimerWatch("PDW"); m_Profiler.m_Bytes.emplace("buffering", 0); + AddTimerWatch("DataRead"); + m_Profiler.m_Bytes.emplace("dataread", 0); + AddTimerWatch("MetaDataRead"); + m_Profiler.m_Bytes.emplace("metadataread", 0); + AddTimerWatch("MetaMetaDataRead"); + m_Profiler.m_Bytes.emplace("metadmetaataread", 0); m_RankMPI = m_Comm.Rank(); } @@ -92,11 +98,20 @@ std::string JSONProfiler::GetRankProfilingJSON( for (const auto &timerPair : profiler.m_Timers) { const profiling::Timer &timer = timerPair.second; - // rankLog += "\"" + timer.m_Process + "_" + timer.GetShortUnits() + - // "\": " + std::to_string(timer.m_ProcessTime) + ", "; - timer.AddToJsonStr(rankLog); + if (timer.m_nCalls > 0) { + rankLog += "\"" + timer.m_Process + "_" + timer.GetShortUnits() + + "\": " + std::to_string(timer.m_ProcessTime) + ", "; + timer.AddToJsonStr(rankLog); + } } + size_t DataBytes = m_Profiler.m_Bytes["dataread"]; + size_t MetaDataBytes = m_Profiler.m_Bytes["metadataread"]; + size_t MetaMetaDataBytes = m_Profiler.m_Bytes["metametadataread"]; + rankLog += ", \"databytes\":" + std::to_string(DataBytes); + rankLog += ", \"metadatabytes\":" + std::to_string(MetaDataBytes); + rankLog += ", \"metametadatabytes\":" + std::to_string(MetaMetaDataBytes); + const size_t transportsSize = transportsTypes.size(); for (unsigned int t = 0; t < transportsSize; ++t) diff --git a/source/adios2/toolkit/profiling/iochrono/IOChrono.h b/source/adios2/toolkit/profiling/iochrono/IOChrono.h index 735d4fea1c..a2d410fccd 100644 --- a/source/adios2/toolkit/profiling/iochrono/IOChrono.h +++ b/source/adios2/toolkit/profiling/iochrono/IOChrono.h @@ -68,6 +68,7 @@ class JSONProfiler void Start(const std::string process) { m_Profiler.Start(process); }; void Stop(const std::string process) { m_Profiler.Stop(process); }; + void AddBytes(const std::string process, size_t bytes) { m_Profiler.m_Bytes[process] += bytes ;}; std::string GetRankProfilingJSON( const std::vector &transportsTypes, From cb28597135f12bd8d37082aec7109b5b947a1c50 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Wed, 23 Aug 2023 07:12:41 -0400 Subject: [PATCH 117/183] format --- source/adios2/engine/bp5/BP5Reader.cpp | 61 ++++++++++--------- .../toolkit/profiling/iochrono/IOChrono.cpp | 11 ++-- .../toolkit/profiling/iochrono/IOChrono.h | 5 +- 3 files changed, 41 insertions(+), 36 deletions(-) diff --git a/source/adios2/engine/bp5/BP5Reader.cpp b/source/adios2/engine/bp5/BP5Reader.cpp index 679a0af97a..2ce49fd991 100644 --- a/source/adios2/engine/bp5/BP5Reader.cpp +++ b/source/adios2/engine/bp5/BP5Reader.cpp @@ -32,7 +32,8 @@ namespace engine BP5Reader::BP5Reader(IO &io, const std::string &name, const Mode mode, helper::Comm comm) : Engine("BP5Reader", io, name, mode, std::move(comm)), m_MDFileManager(io, m_Comm), m_DataFileManager(io, m_Comm), m_MDIndexFileManager(io, m_Comm), - m_FileMetaMetadataManager(io, m_Comm), m_ActiveFlagFileManager(io, m_Comm), m_Remote(), m_JSONProfiler(m_Comm) + m_FileMetaMetadataManager(io, m_Comm), m_ActiveFlagFileManager(io, m_Comm), m_Remote(), + m_JSONProfiler(m_Comm) { PERFSTUBS_SCOPED_TIMER("BP5Reader::Open"); Init(); @@ -319,9 +320,10 @@ void BP5Reader::PerformLocalGets() reqidx = nextRequest; ++nextRequest; } - if (reqidx <= nRequest) { - m_JSONProfiler.AddBytes("dataread", ReadRequests[reqidx].ReadLength); - } + if (reqidx <= nRequest) + { + m_JSONProfiler.AddBytes("dataread", ReadRequests[reqidx].ReadLength); + } return reqidx; }; @@ -411,7 +413,7 @@ void BP5Reader::PerformLocalGets() { Req.DestinationAddr = buf.data(); } - m_JSONProfiler.AddBytes("dataread", Req.ReadLength); + m_JSONProfiler.AddBytes("dataread", Req.ReadLength); ReadData(m_DataFileManager, maxOpenFiles, Req.WriterRank, Req.Timestep, Req.StartOffset, Req.ReadLength, Req.DestinationAddr); m_BP5Deserializer->FinalizeGet(Req, false); @@ -796,19 +798,19 @@ void BP5Reader::UpdateBuffer(const TimePoint &timeoutInstant, const Seconds &pol if (actualFileSize >= expectedMinFileSize) { - m_JSONProfiler.Start("MetaDataRead"); + m_JSONProfiler.Start("MetaDataRead"); m_Metadata.Resize(fileFilteredSize, "allocating metadata buffer, " "in call to BP5Reader Open"); size_t mempos = 0; for (auto p : m_FilteredMetadataInfo) { - m_JSONProfiler.AddBytes("metadataread", p.second); + m_JSONProfiler.AddBytes("metadataread", p.second); m_MDFileManager.ReadFile(m_Metadata.m_Buffer.data() + mempos, p.second, p.first); mempos += p.second; } m_MDFileAlreadyReadSize = expectedMinFileSize; - m_JSONProfiler.Stop("MetaDataRead"); + m_JSONProfiler.Stop("MetaDataRead"); } else { @@ -834,15 +836,15 @@ void BP5Reader::UpdateBuffer(const TimePoint &timeoutInstant, const Seconds &pol if (metametadataFileSize > m_MetaMetaDataFileAlreadyReadSize) { const size_t newMMDSize = metametadataFileSize - m_MetaMetaDataFileAlreadyReadSize; - m_JSONProfiler.Start("MetaMetaDataRead"); - m_JSONProfiler.AddBytes("metametadataread", newMMDSize); + m_JSONProfiler.Start("MetaMetaDataRead"); + m_JSONProfiler.AddBytes("metametadataread", newMMDSize); m_MetaMetadata.Resize(metametadataFileSize, "(re)allocating meta-meta-data buffer, " "in call to BP5Reader Open"); m_FileMetaMetadataManager.ReadFile(m_MetaMetadata.m_Buffer.data() + m_MetaMetaDataFileAlreadyReadSize, newMMDSize, m_MetaMetaDataFileAlreadyReadSize); m_MetaMetaDataFileAlreadyReadSize += newMMDSize; - m_JSONProfiler.Stop("MetaMetaDataRead"); + m_JSONProfiler.Stop("MetaMetaDataRead"); } } @@ -1219,36 +1221,35 @@ void BP5Reader::DoClose(const int transportIndex) } #if defined(_WIN32) -# include -# define getpid() GetCurrentProcessId(); -#elif defined(__linux) || defined(__APPLE__) || defined(__OpenBSD__) || \ - defined(__FreeBSD__) || defined(__NetBSD__) || defined(__DragonFly__) || \ - defined(__CYGWIN__) +#include +#define getpid() GetCurrentProcessId(); +#elif defined(__linux) || defined(__APPLE__) || defined(__OpenBSD__) || defined(__FreeBSD__) || \ + defined(__NetBSD__) || defined(__DragonFly__) || defined(__CYGWIN__) #else -# define getpid() (long long) -1; +#define getpid() (long long)-1; #endif void BP5Reader::FlushProfiler() { - auto LineJSON = m_JSONProfiler.GetRankProfilingJSON({}, {}); + auto LineJSON = m_JSONProfiler.GetRankProfilingJSON({}, {}); const std::vector profilingJSON(m_JSONProfiler.AggregateProfilingJSON(LineJSON)); if (m_RankMPI == 0) { std::string profileFileName; - transport::FileFStream profilingJSONStream(m_Comm); - std::string bpBaseName = m_Name; - - auto PID = getpid(); - std::stringstream PIDstr; - PIDstr << std::hex << PID; - // write profile json in /tmp - profileFileName = "/tmp/" + bpBaseName + "_" + PIDstr.str() + "_profiling.json"; - - profilingJSONStream.Open(profileFileName, Mode::Write); - profilingJSONStream.Write(profilingJSON.data(), profilingJSON.size()); - profilingJSONStream.Close(); + transport::FileFStream profilingJSONStream(m_Comm); + std::string bpBaseName = m_Name; + + auto PID = getpid(); + std::stringstream PIDstr; + PIDstr << std::hex << PID; + // write profile json in /tmp + profileFileName = "/tmp/" + bpBaseName + "_" + PIDstr.str() + "_profiling.json"; + + profilingJSONStream.Open(profileFileName, Mode::Write); + profilingJSONStream.Write(profilingJSON.data(), profilingJSON.size()); + profilingJSONStream.Close(); } } diff --git a/source/adios2/toolkit/profiling/iochrono/IOChrono.cpp b/source/adios2/toolkit/profiling/iochrono/IOChrono.cpp index 5c3761f7dc..a8713339ed 100644 --- a/source/adios2/toolkit/profiling/iochrono/IOChrono.cpp +++ b/source/adios2/toolkit/profiling/iochrono/IOChrono.cpp @@ -98,11 +98,12 @@ std::string JSONProfiler::GetRankProfilingJSON( for (const auto &timerPair : profiler.m_Timers) { const profiling::Timer &timer = timerPair.second; - if (timer.m_nCalls > 0) { - rankLog += "\"" + timer.m_Process + "_" + timer.GetShortUnits() + - "\": " + std::to_string(timer.m_ProcessTime) + ", "; - timer.AddToJsonStr(rankLog); - } + if (timer.m_nCalls > 0) + { + rankLog += "\"" + timer.m_Process + "_" + timer.GetShortUnits() + + "\": " + std::to_string(timer.m_ProcessTime) + ", "; + timer.AddToJsonStr(rankLog); + } } size_t DataBytes = m_Profiler.m_Bytes["dataread"]; diff --git a/source/adios2/toolkit/profiling/iochrono/IOChrono.h b/source/adios2/toolkit/profiling/iochrono/IOChrono.h index a2d410fccd..9abe786144 100644 --- a/source/adios2/toolkit/profiling/iochrono/IOChrono.h +++ b/source/adios2/toolkit/profiling/iochrono/IOChrono.h @@ -68,7 +68,10 @@ class JSONProfiler void Start(const std::string process) { m_Profiler.Start(process); }; void Stop(const std::string process) { m_Profiler.Stop(process); }; - void AddBytes(const std::string process, size_t bytes) { m_Profiler.m_Bytes[process] += bytes ;}; + void AddBytes(const std::string process, size_t bytes) + { + m_Profiler.m_Bytes[process] += bytes; + }; std::string GetRankProfilingJSON( const std::vector &transportsTypes, From 7f3cecfa40ab25a5b57542067e520c525f4c9134 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Wed, 23 Aug 2023 12:51:16 -0400 Subject: [PATCH 118/183] Remove file before writing, catch exceptions --- source/adios2/engine/bp5/BP5Reader.cpp | 15 ++++++++++++--- 1 file changed, 12 insertions(+), 3 deletions(-) diff --git a/source/adios2/engine/bp5/BP5Reader.cpp b/source/adios2/engine/bp5/BP5Reader.cpp index 2ce49fd991..8062f9184a 100644 --- a/source/adios2/engine/bp5/BP5Reader.cpp +++ b/source/adios2/engine/bp5/BP5Reader.cpp @@ -14,7 +14,9 @@ #include #include +#include #include +#include #include #include @@ -1247,9 +1249,16 @@ void BP5Reader::FlushProfiler() // write profile json in /tmp profileFileName = "/tmp/" + bpBaseName + "_" + PIDstr.str() + "_profiling.json"; - profilingJSONStream.Open(profileFileName, Mode::Write); - profilingJSONStream.Write(profilingJSON.data(), profilingJSON.size()); - profilingJSONStream.Close(); + try + { + (void)remove(profileFileName.c_str()); + profilingJSONStream.Open(profileFileName, Mode::Write); + profilingJSONStream.Write(profilingJSON.data(), profilingJSON.size()); + profilingJSONStream.Close(); + } + catch (...) + { // do nothing + } } } From 5ae2babca2d84f5a848fa38eed77a86f48244f24 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Wed, 23 Aug 2023 18:24:37 -0400 Subject: [PATCH 119/183] reorder --- source/adios2/engine/bp5/BP5Reader.h | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/source/adios2/engine/bp5/BP5Reader.h b/source/adios2/engine/bp5/BP5Reader.h index 117a05f3c2..3c45b1db2c 100644 --- a/source/adios2/engine/bp5/BP5Reader.h +++ b/source/adios2/engine/bp5/BP5Reader.h @@ -58,7 +58,6 @@ class BP5Reader : public BP5Engine, public Engine MinVarInfo *MinBlocksInfo(const VariableBase &, const size_t Step) const; bool VarShape(const VariableBase &Var, const size_t Step, Dims &Shape) const; bool VariableMinMax(const VariableBase &, const size_t Step, MinMaxStruct &MinMax); - adios2::profiling::JSONProfiler m_JSONProfiler; private: format::BP5Deserializer *m_BP5Deserializer = nullptr; @@ -96,6 +95,7 @@ class BP5Reader : public BP5Engine, public Engine transportman::TransportMan m_ActiveFlagFileManager; Remote m_Remote; bool m_WriterIsActive = true; + adios2::profiling::JSONProfiler m_JSONProfiler; /** used for per-step reads, TODO: to be moved to BP5Deserializer */ size_t m_CurrentStep = 0; From 66f24a3f396732c669db569a73dcdd5dbc98f998 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Thu, 24 Aug 2023 11:11:07 -0400 Subject: [PATCH 120/183] defines --- source/adios2/engine/bp5/BP5Reader.cpp | 2 ++ 1 file changed, 2 insertions(+) diff --git a/source/adios2/engine/bp5/BP5Reader.cpp b/source/adios2/engine/bp5/BP5Reader.cpp index 8062f9184a..fd2f4c33db 100644 --- a/source/adios2/engine/bp5/BP5Reader.cpp +++ b/source/adios2/engine/bp5/BP5Reader.cpp @@ -1227,6 +1227,8 @@ void BP5Reader::DoClose(const int transportIndex) #define getpid() GetCurrentProcessId(); #elif defined(__linux) || defined(__APPLE__) || defined(__OpenBSD__) || defined(__FreeBSD__) || \ defined(__NetBSD__) || defined(__DragonFly__) || defined(__CYGWIN__) +#include +#include #else #define getpid() (long long)-1; #endif From 90bafd408901e4f3b86103d99a0460c2a6a6ae9c Mon Sep 17 00:00:00 2001 From: Jordan Henderson Date: Wed, 24 May 2023 11:51:09 -0500 Subject: [PATCH 121/183] Update ADIOS2 HDF5 VOL with basic set of capability flags --- source/h5vol/H5VolReadWrite.h | 22 +++++++++++++++------- source/h5vol/H5Vol_def.h | 3 +++ 2 files changed, 18 insertions(+), 7 deletions(-) diff --git a/source/h5vol/H5VolReadWrite.h b/source/h5vol/H5VolReadWrite.h index 92047b751f..e6b4780968 100644 --- a/source/h5vol/H5VolReadWrite.h +++ b/source/h5vol/H5VolReadWrite.h @@ -32,6 +32,8 @@ extern herr_t H5VL_adios2_beginstep(const char *engine_name, adios2_step_mode m) extern herr_t H5VL_adios2_endstep(const char *engine_nane); +static herr_t H5VL_adios2_introspect_get_cap_flags(const void *info, uint64_t *cap_flags); + static herr_t H5VL_adios2_introspect_opt_query(void *obj, H5VL_subclass_t cls, int opt_type, uint64_t *supported) { @@ -51,11 +53,11 @@ static herr_t H5VL_adios2_datatype_close(void *dt, hid_t H5_ATTR_UNUSED dxpl_id, static const H5VL_class_t H5VL_adios2_def = { H5VL_VERSION, /* Version # of connector, needed for v1.13 */ (H5VL_class_value_t)H5VL_ADIOS2_VALUE, - H5VL_ADIOS2_NAME, /* name */ - H5VL_ADIOS2_VERSION, /* version of this vol, not as important */ - H5VL_CAP_FLAG_NONE, /* Capability flags for connector */ - H5VL_adios2_init, /* initialize */ - H5VL_adios2_term, /* terminate */ + H5VL_ADIOS2_NAME, /* name */ + H5VL_ADIOS2_VERSION, /* version of this vol, not as important */ + H5VL_ADIOS2_CAP_FLAGS, /* Capability flags for connector */ + H5VL_adios2_init, /* initialize */ + H5VL_adios2_term, /* terminate */ { /* info_cls */ (size_t)0, /* info size */ @@ -117,8 +119,8 @@ static const H5VL_class_t H5VL_adios2_def = { { /* introspect_cls */ NULL, // H5VL_pass_through_introspect_get_conn_cls, /* get_conn_cls */ - NULL, /* get_cap_flags */ - H5VL_adios2_introspect_opt_query, /* opt_query */ + H5VL_adios2_introspect_get_cap_flags, /* get_cap_flags */ + H5VL_adios2_introspect_opt_query, /* opt_query */ }, { /* request_cls */ @@ -145,4 +147,10 @@ static const H5VL_class_t H5VL_adios2_def = { NULL /*/optional*/ }; +static herr_t H5VL_adios2_introspect_get_cap_flags(const void *info, uint64_t *cap_flags) +{ + *cap_flags = H5VL_adios2_def.cap_flags; + return 0; +} + #endif // ADIOS_VOL_WRITER_H diff --git a/source/h5vol/H5Vol_def.h b/source/h5vol/H5Vol_def.h index 21b1c226ed..61a8541613 100644 --- a/source/h5vol/H5Vol_def.h +++ b/source/h5vol/H5Vol_def.h @@ -19,6 +19,9 @@ #define H5VL_ADIOS2_NAME "ADIOS2_VOL" #define H5VL_ADIOS2_VALUE 511 /* VOL connector ID */ #define H5VL_ADIOS2_VERSION 0 +#define H5VL_ADIOS2_CAP_FLAGS \ + (H5VL_CAP_FLAG_FILE_BASIC | H5VL_CAP_FLAG_GROUP_BASIC | H5VL_CAP_FLAG_DATASET_BASIC | \ + H5VL_CAP_FLAG_ATTR_BASIC | H5VL_CAP_FLAG_OBJECT_BASIC) typedef struct H5VL_ADIOS2_t { From 9b49a360a33133341069d2b5c44035686f52dce8 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Mon, 28 Aug 2023 15:29:26 -0400 Subject: [PATCH 122/183] Remove unused SelectionType values --- source/adios2/common/ADIOSTypes.cpp | 4 ---- source/adios2/common/ADIOSTypes.h | 2 -- testing/adios2/interface/TestADIOSInterface.cpp | 2 -- 3 files changed, 8 deletions(-) diff --git a/source/adios2/common/ADIOSTypes.cpp b/source/adios2/common/ADIOSTypes.cpp index 824fcfa083..dd8f1460af 100644 --- a/source/adios2/common/ADIOSTypes.cpp +++ b/source/adios2/common/ADIOSTypes.cpp @@ -173,12 +173,8 @@ std::string ToString(SelectionType value) { case SelectionType::BoundingBox: return "SelectionType::BoundingBox"; - case SelectionType::Points: - return "SelectionType::Points"; case SelectionType::WriteBlock: return "SelectionType::WriteBlock"; - case SelectionType::Auto: - return "SelectionType::Auto"; default: return "ToString: Unknown SelectionType"; } diff --git a/source/adios2/common/ADIOSTypes.h b/source/adios2/common/ADIOSTypes.h index acc64ee917..63a33d1a5c 100644 --- a/source/adios2/common/ADIOSTypes.h +++ b/source/adios2/common/ADIOSTypes.h @@ -126,10 +126,8 @@ enum class SelectionType { BoundingBox, ///< Contiguous block of data defined by offsets and counts /// per dimension - Points, ///< List of individual points WriteBlock, ///< Selection of an individual block written by a writer /// process - Auto ///< Let the engine decide what to return }; // Data types. diff --git a/testing/adios2/interface/TestADIOSInterface.cpp b/testing/adios2/interface/TestADIOSInterface.cpp index a7f628c76f..18d8d3c779 100644 --- a/testing/adios2/interface/TestADIOSInterface.cpp +++ b/testing/adios2/interface/TestADIOSInterface.cpp @@ -104,9 +104,7 @@ TEST_F(ADIOS2_CXX11_API, ToString) EXPECT_EQ(ToString(adios2::TimeUnit::Hours), "TimeUnit::Hours"); EXPECT_EQ(ToString(adios2::SelectionType::BoundingBox), "SelectionType::BoundingBox"); - EXPECT_EQ(ToString(adios2::SelectionType::Points), "SelectionType::Points"); EXPECT_EQ(ToString(adios2::SelectionType::WriteBlock), "SelectionType::WriteBlock"); - EXPECT_EQ(ToString(adios2::SelectionType::Auto), "SelectionType::Auto"); } TEST_F(ADIOS2_CXX11_API, APIToString) From 6f026ffca479c83631eb53fba56782b98a479df8 Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Tue, 1 Aug 2023 17:12:01 -0600 Subject: [PATCH 123/183] ci: Add HDF5 to a windows build --- scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake | 3 +++ .../ci/cmake/ci-win2022-vs2022-serial.cmake | 3 +++ scripts/ci/gh-actions/windows-setup.ps1 | 24 +++++++++++++++++++ 3 files changed, 30 insertions(+) diff --git a/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake b/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake index f51d9c438a..321d1d6cae 100644 --- a/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake +++ b/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake @@ -6,6 +6,9 @@ set(ENV{CXXFLAGS} /WX) set(dashboard_cache " ADIOS2_USE_Fortran:BOOL=OFF ADIOS2_USE_MPI:BOOL=ON +ADIOS2_USE_HDF5:STRING=ON +ADIOS2_USE_HDF5_VOL:STRING=OFF +HDF5_DIR:PATH=C:/hdf5/HDF5-1.14.2.1-win64/cmake ") set(CTEST_CMAKE_GENERATOR "Visual Studio 17 2022") diff --git a/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake b/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake index f3b7347e7c..a078f1ee58 100644 --- a/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake +++ b/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake @@ -6,6 +6,9 @@ set(ENV{CXXFLAGS} /WX) set(dashboard_cache " ADIOS2_USE_Fortran:BOOL=OFF ADIOS2_USE_MPI:BOOL=OFF +ADIOS2_USE_HDF5:STRING=ON +ADIOS2_USE_HDF5_VOL:STRING=OFF +HDF5_DIR:PATH=C:/hdf5/HDF5-1.14.2.1-win64/cmake ") set(CTEST_CMAKE_GENERATOR "Visual Studio 17 2022") diff --git a/scripts/ci/gh-actions/windows-setup.ps1 b/scripts/ci/gh-actions/windows-setup.ps1 index 4334327a2b..4bcae1d35a 100644 --- a/scripts/ci/gh-actions/windows-setup.ps1 +++ b/scripts/ci/gh-actions/windows-setup.ps1 @@ -56,3 +56,27 @@ if($Env:GH_YML_MATRIX_PARALLEL -eq "ompi") Write-Host "::endgroup::" } +if ($Env:GH_YML_MATRIX_COMPILER -eq "vs2022") +{ + $url = "https://github.com/HDFGroup/hdf5/releases/download/hdf5-1_14_1-2/hdf5-1_14_1-2-win_vs2022.zip" + + $tempdir = $Env:RUNNER_TEMP + $hdf5Zip = Join-Path $tempdir hdf5-1_14_1-2-win_vs2022.zip + $installDir = "C:\hdf5" + $extractDir = Join-Path $tempdir hdf5 + $innerZip = Join-Path $extractDir HDF5-1.14.2.1-win64.zip + + Write-Host "::group::Downloading windows HDF5 release $url" + Invoke-WebRequest $url -OutFile $hdf5Zip + Write-Host "::endgroup::" + + Write-Host "::group::Extracting outer windows HDF5 release $hdf5Zip" + Expand-Archive $hdf5Zip -DestinationPath $tempDir -Force + Write-Host "::endgroup::" + + Write-Host "::group::Extracting inner windows HDF5 release $innerZip" + Expand-Archive $innerZip -DestinationPath $installDir -Force + Write-Host "::endgroup::" + + # Now the HDF5_DIR can be set to: C:\hdf5\HDF5-1.14.2.1-win64\cmake +} From 89555418ecd1484c9241b76457de43f06586d00a Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Wed, 2 Aug 2023 11:05:56 -0600 Subject: [PATCH 124/183] use documented initial cache variable to find hdf5 on windows --- scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake | 2 +- scripts/ci/cmake/ci-win2022-vs2022-serial.cmake | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake b/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake index 321d1d6cae..66ce4ea851 100644 --- a/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake +++ b/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake @@ -8,7 +8,7 @@ ADIOS2_USE_Fortran:BOOL=OFF ADIOS2_USE_MPI:BOOL=ON ADIOS2_USE_HDF5:STRING=ON ADIOS2_USE_HDF5_VOL:STRING=OFF -HDF5_DIR:PATH=C:/hdf5/HDF5-1.14.2.1-win64/cmake +HDF5_ROOT:PATH=C:/hdf5/HDF5-1.14.2.1-win64 ") set(CTEST_CMAKE_GENERATOR "Visual Studio 17 2022") diff --git a/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake b/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake index a078f1ee58..96fb1339b3 100644 --- a/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake +++ b/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake @@ -8,7 +8,7 @@ ADIOS2_USE_Fortran:BOOL=OFF ADIOS2_USE_MPI:BOOL=OFF ADIOS2_USE_HDF5:STRING=ON ADIOS2_USE_HDF5_VOL:STRING=OFF -HDF5_DIR:PATH=C:/hdf5/HDF5-1.14.2.1-win64/cmake +HDF5_ROOT:PATH=C:/hdf5/HDF5-1.14.2.1-win64 ") set(CTEST_CMAKE_GENERATOR "Visual Studio 17 2022") From 6864cc2c881ed778eb4234d88952538915e9f55d Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Tue, 29 Aug 2023 19:50:48 -0400 Subject: [PATCH 125/183] Fixup local var reading by block with test, master branch --- source/adios2/core/Variable.tcc | 22 ++++++++++------ .../toolkit/format/bp5/BP5Deserializer.cpp | 25 ++++++++++++++----- .../bp/TestBPWriteReadLocalVariables.cpp | 21 +++++++++++++--- 3 files changed, 51 insertions(+), 17 deletions(-) diff --git a/source/adios2/core/Variable.tcc b/source/adios2/core/Variable.tcc index 849390e4bc..85875a8073 100644 --- a/source/adios2/core/Variable.tcc +++ b/source/adios2/core/Variable.tcc @@ -56,15 +56,23 @@ Dims Variable::DoCount() const ", in call to Variable::Count()"); } - size_t *DimsPtr = (MVI->BlocksInfo)[m_BlockID].Count; - Dims D; - D.resize(MVI->Dims); - for (int i = 0; i < MVI->Dims; i++) + if (!MVI->WasLocalValue) { - D[i] = DimsPtr[i]; + size_t *DimsPtr = (MVI->BlocksInfo)[m_BlockID].Count; + Dims D; + D.resize(MVI->Dims); + for (int i = 0; i < MVI->Dims; i++) + { + D[i] = DimsPtr[i]; + } + delete MVI; + return D; + } + else + { + delete MVI; + return {1}; } - delete MVI; - return D; } const size_t step = !m_FirstStreamingStep ? m_Engine->CurrentStep() : lf_Step(); diff --git a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp index 93f5eb686b..c78fa38ae1 100644 --- a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp +++ b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp @@ -1312,14 +1312,27 @@ bool BP5Deserializer::QueueGetSingle(core::VariableBase &variable, void *DestDat if (VarRec->OrigShapeID == ShapeID::LocalValue) { // Shows up as global array with one element per writer rank - for (size_t WriterRank = variable.m_Start[0]; - WriterRank < variable.m_Count[0] + variable.m_Start[0]; WriterRank++) + if (variable.m_SelectionType == adios2::SelectionType::BoundingBox) + { + for (size_t WriterRank = variable.m_Start[0]; + WriterRank < variable.m_Count[0] + variable.m_Start[0]; WriterRank++) + { + (void)GetSingleValueFromMetadata(variable, VarRec, DestData, AbsStep, WriterRank); + DestData = (char *)DestData + variable.m_ElementSize; // use variable.m_ElementSize + // because it's the size in local + // memory, VarRec->ElementSize is + // the size in metadata + } + } + else if (variable.m_SelectionType == adios2::SelectionType::WriteBlock) { + size_t WriterRank = variable.m_BlockID; (void)GetSingleValueFromMetadata(variable, VarRec, DestData, AbsStep, WriterRank); - DestData = (char *)DestData + variable.m_ElementSize; // use variable.m_ElementSize - // because it's the size in local - // memory, VarRec->ElementSize is - // the size in metadata + } + else + { + helper::Throw("Toolkit", "format::bp::BP5Deserializer", + "QueueGetSingle", "Unexpected selection type"); } return false; } diff --git a/testing/adios2/engine/bp/TestBPWriteReadLocalVariables.cpp b/testing/adios2/engine/bp/TestBPWriteReadLocalVariables.cpp index 0b8093e115..225334a307 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadLocalVariables.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadLocalVariables.cpp @@ -210,14 +210,27 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) EXPECT_EQ(rankLocalValueData[r], static_cast(r)); } + if (mpiSize > 1) + { + for (size_t r = 0; r < rankLocalValueData.size(); ++r) + { + int32_t val; + var_RanksLocalValue.SetBlockSelection(r); + bpReader.Get(var_RanksLocalValue, &val); + EXPECT_EQ(val, static_cast(r)); + } + } + + bpReader.Get(var_RanksLocalValue, rankLocalValueData); + EXPECT_TRUE(var_RanksLocalValueString); EXPECT_EQ(var_RanksLocalValueString.ShapeID(), adios2::ShapeID::GlobalArray); - EXPECT_EQ(var_RanksLocalValue.Shape().size(), 1); - EXPECT_EQ(var_RanksLocalValue.Shape()[0], mpiSize); + EXPECT_EQ(var_RanksLocalValueString.Shape().size(), 1); + EXPECT_EQ(var_RanksLocalValueString.Shape()[0], mpiSize); std::vector rankLocalValueDataString; bpReader.Get(var_RanksLocalValueString, rankLocalValueDataString, adios2::Mode::Sync); - EXPECT_EQ(rankLocalValueData.size(), mpiSize); - for (size_t r = 0; r < rankLocalValueData.size(); ++r) + EXPECT_EQ(rankLocalValueDataString.size(), mpiSize); + for (size_t r = 0; r < rankLocalValueDataString.size(); ++r) { EXPECT_EQ(rankLocalValueDataString[r], std::to_string(r)); } From ea587280ca7c7f3aa68ca8fcada5339f742d656d Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Tue, 29 Aug 2023 18:12:20 -0600 Subject: [PATCH 126/183] Allow building with Visual Studio and HDF5 shared libs --- CMakeLists.txt | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/CMakeLists.txt b/CMakeLists.txt index 8836679e75..f0f6941024 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -287,6 +287,11 @@ if(BUILD_SHARED_LIBS AND ADIOS2_RUN_INSTALL_TEST) endif() endif() +if(MSVC AND BUILD_SHARED_LIBS AND ADIOS2_HAVE_HDF5) + # See note about building with visual studio and shared libs, here: + # https://github.com/HDFGroup/hdf5/blob/develop/release_docs/USING_HDF5_VS.txt + add_definitions(-DH5_BUILT_AS_DYNAMIC_LIB=1) +endif() #------------------------------------------------------------------------------# # Third party libraries From 15626a3fa080825a16685c22545faf1c87119789 Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Tue, 29 Aug 2023 18:12:40 -0600 Subject: [PATCH 127/183] Fix size_t -> int conversion warnings --- .../hdf5Reader/helloHDF5Reader_nompi.cpp | 2 +- source/adios2/engine/hdf5/HDF5ReaderP.cpp | 14 +++++++-- .../toolkit/interop/hdf5/HDF5Common.cpp | 31 ++++++++++++------- .../adios2/toolkit/interop/hdf5/HDF5Common.h | 2 +- .../toolkit/interop/hdf5/HDF5Common.tcc | 26 +++++++++++++--- testing/adios2/engine/SmallTestData.h | 24 +++++++------- 6 files changed, 67 insertions(+), 32 deletions(-) diff --git a/examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp b/examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp index 120c12ebc5..a7645f5298 100644 --- a/examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp +++ b/examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp @@ -22,7 +22,7 @@ void ReadData(adios2::IO h5IO, adios2::Engine h5Reader, const std::string &name) if (var) { - int nDims = var.Shape().size(); + size_t nDims = var.Shape().size(); size_t totalSize = 1; for (int i = 0; i < nDims; i++) { diff --git a/source/adios2/engine/hdf5/HDF5ReaderP.cpp b/source/adios2/engine/hdf5/HDF5ReaderP.cpp index 0d2a88fc02..1344208d8e 100644 --- a/source/adios2/engine/hdf5/HDF5ReaderP.cpp +++ b/source/adios2/engine/hdf5/HDF5ReaderP.cpp @@ -13,6 +13,8 @@ #include "adios2/helper/adiosFunctions.h" //CSVToVector #include "adios2/helper/adiosFunctions.h" //IsHDF5 +#include +#include #include namespace adios2 @@ -145,10 +147,18 @@ size_t HDF5ReaderP::ReadDataset(hid_t dataSetId, hid_t h5Type, Variable &vari if (ret < 0) return 0; - hid_t memDataSpace = H5Screate_simple(ndims, count.data(), NULL); + size_t max_int = static_cast(std::numeric_limits::max()); + if (ndims > max_int) + { + helper::Throw("Engine", "HDF5ReaderP", "ReadDataset", + "Number of dimensions is too large to be " + "represented by an int"); + } + + hid_t memDataSpace = H5Screate_simple(static_cast(ndims), count.data(), NULL); interop::HDF5TypeGuard g_mds(memDataSpace, interop::E_H5_SPACE); - int elementsRead = 1; + size_t elementsRead = 1; for (size_t i = 0u; i < ndims; i++) { elementsRead *= count[i]; diff --git a/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp b/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp index d19b78e92b..c07360ce2b 100644 --- a/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp +++ b/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp @@ -135,8 +135,17 @@ void HDF5Common::ParseParameters(core::IO &io) m_ChunkPID = H5Pcreate(H5P_DATASET_CREATE); m_ChunkDim = chunkDim.size(); + + size_t max_int = static_cast(std::numeric_limits::max()); + if (m_ChunkDim > max_int) + { + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", + "ParseParameters", "chunkDim.size() is " + "too large to be represented by an int"); + } + if (m_ChunkDim > 0) - H5Pset_chunk(m_ChunkPID, chunkDim.size(), chunkDim.data()); + H5Pset_chunk(m_ChunkPID, static_cast(m_ChunkDim), chunkDim.data()); } } @@ -383,8 +392,8 @@ void HDF5Common::FindVarsFromH5(core::IO &io, hid_t top_id, const char *gname, c char name[100]; for (k = 0; k < numObj; k++) { - ret = H5Gget_objname_by_idx(gid, (hsize_t)k, name, sizeof(name)); - if (ret >= 0) + ssize_t result = H5Gget_objname_by_idx(gid, (hsize_t)k, name, sizeof(name)); + if (result >= 0) { int currType = H5Gget_objtype_by_idx(gid, k); if ((currType == H5G_DATASET) || (currType == H5G_TYPE)) @@ -447,8 +456,8 @@ void HDF5Common::ReadVariables(size_t ts, core::IO &io) char name[50]; for (k = 0; k < numObj; k++) { - ret = H5Gget_objname_by_idx(gid, (hsize_t)k, name, sizeof(name)); - if (ret >= 0) + ssize_t result = H5Gget_objname_by_idx(gid, (hsize_t)k, name, sizeof(name)); + if (result >= 0) { int currType = H5Gget_objtype_by_idx(gid, k); if (currType == H5G_GROUP) @@ -497,8 +506,8 @@ void HDF5Common::AddSingleString(core::IO &io, std::string const &name, hid_t da { // invalid variable, do not define printf("WARNING: IO is not accepting definition of variable: %s. " - "Skipping. \n", - name.c_str()); + "\nException: %s. \nSkipping. \n", + name.c_str(), e.what()); } } @@ -568,9 +577,9 @@ void HDF5Common::AddVarString(core::IO &io, std::string const &name, hid_t datas { // invalid variable, do not define printf("WARNING: IO is not accepting definition of " - "variable: %s. " + "variable: %s. \nException: %s. \n" "Skipping. \n", - name.c_str()); + name.c_str(), e.what()); } } return; @@ -632,8 +641,8 @@ void HDF5Common::AddVar(core::IO &io, std::string const &name, hid_t datasetId, { // invalid variable, do not define printf("WARNING: IO is not accepting definition of variable: %s. " - "Skipping. \n", - name.c_str()); + "\nException: %s. \nSkipping. \n", + name.c_str(), e.what()); } } else diff --git a/source/adios2/toolkit/interop/hdf5/HDF5Common.h b/source/adios2/toolkit/interop/hdf5/HDF5Common.h index 91cfac34b8..1fe2ffa5ca 100644 --- a/source/adios2/toolkit/interop/hdf5/HDF5Common.h +++ b/source/adios2/toolkit/interop/hdf5/HDF5Common.h @@ -261,7 +261,7 @@ class HDF5Common hid_t m_TimeStepH5T = H5T_NATIVE_ULLONG; ; hid_t m_ChunkPID; - int m_ChunkDim; + size_t m_ChunkDim; std::set m_ChunkVarNames; bool m_OrderByC = true; // C or fortran diff --git a/source/adios2/toolkit/interop/hdf5/HDF5Common.tcc b/source/adios2/toolkit/interop/hdf5/HDF5Common.tcc index ed1328e792..f19205f112 100644 --- a/source/adios2/toolkit/interop/hdf5/HDF5Common.tcc +++ b/source/adios2/toolkit/interop/hdf5/HDF5Common.tcc @@ -25,7 +25,7 @@ namespace interop template void HDF5Common::DefineDataset(core::Variable &variable) { - int dimSize = std::max(variable.m_Shape.size(), variable.m_Count.size()); + size_t dimSize = std::max(variable.m_Shape.size(), variable.m_Count.size()); hid_t h5Type = GetHDF5Type(); if (dimSize == 0) @@ -43,7 +43,15 @@ void HDF5Common::DefineDataset(core::Variable &variable) std::vector dimsf, count, offset; GetHDF5SpaceSpec(variable, dimsf, count, offset); - hid_t fileSpace = H5Screate_simple(dimSize, dimsf.data(), NULL); + size_t max_int = static_cast(std::numeric_limits::max()); + if (dimSize > max_int) + { + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", + "DefineDataset", "dimSize is too large " + "to be represented by an int"); + } + + hid_t fileSpace = H5Screate_simple(static_cast(dimSize), dimsf.data(), NULL); HDF5TypeGuard fs(fileSpace, E_H5_SPACE); std::vector chain; @@ -110,7 +118,7 @@ template void HDF5Common::Write(core::Variable &variable, const T *values) { CheckWriteGroup(); - int dimSize = std::max(variable.m_Shape.size(), variable.m_Count.size()); + size_t dimSize = std::max(variable.m_Shape.size(), variable.m_Count.size()); hid_t h5Type = GetHDF5Type(); if (std::is_same::value) @@ -173,7 +181,15 @@ void HDF5Common::Write(core::Variable &variable, const T *values) std::vector dimsf, count, offset; GetHDF5SpaceSpec(variable, dimsf, count, offset); - hid_t fileSpace = H5Screate_simple(dimSize, dimsf.data(), NULL); + size_t max_int = static_cast(std::numeric_limits::max()); + if (dimSize > max_int) + { + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", + "Write", "dimSize is too large " + "to be represented by an int"); + } + + hid_t fileSpace = H5Screate_simple(static_cast(dimSize), dimsf.data(), NULL); #ifndef RELAY_DEFINE_TO_HDF5 // RELAY_DEFINE_TO_HDF5 = variables in io are // created at begin_step std::vector chain; @@ -187,7 +203,7 @@ void HDF5Common::Write(core::Variable &variable, const T *values) { } #endif - hid_t memSpace = H5Screate_simple(dimSize, count.data(), NULL); + hid_t memSpace = H5Screate_simple(static_cast(dimSize), count.data(), NULL); // Select hyperslab fileSpace = H5Dget_space(dsetID); diff --git a/testing/adios2/engine/SmallTestData.h b/testing/adios2/engine/SmallTestData.h index 41a119eb2c..2bbb126aef 100644 --- a/testing/adios2/engine/SmallTestData.h +++ b/testing/adios2/engine/SmallTestData.h @@ -68,19 +68,19 @@ struct SmallTestData std::array TF = {{true, false, true, true, false, false, true, false, false, true}}; }; -SmallTestData generateNewSmallTestData(SmallTestData in, int step, int rank, int size) +SmallTestData generateNewSmallTestData(SmallTestData in, size_t step, size_t rank, size_t size) { - int j = rank + 1 + step * size; - std::for_each(in.I8.begin(), in.I8.end(), [&](int8_t &v) { v += j; }); - std::for_each(in.I16.begin(), in.I16.end(), [&](int16_t &v) { v += j; }); - std::for_each(in.I32.begin(), in.I32.end(), [&](int32_t &v) { v += j; }); - std::for_each(in.I64.begin(), in.I64.end(), [&](int64_t &v) { v += j; }); - std::for_each(in.U8.begin(), in.U8.end(), [&](uint8_t &v) { v += j; }); - std::for_each(in.U16.begin(), in.U16.end(), [&](uint16_t &v) { v += j; }); - std::for_each(in.U32.begin(), in.U32.end(), [&](uint32_t &v) { v += j; }); - std::for_each(in.U64.begin(), in.U64.end(), [&](uint64_t &v) { v += j; }); - std::for_each(in.R32.begin(), in.R32.end(), [&](float &v) { v += j; }); - std::for_each(in.R64.begin(), in.R64.end(), [&](double &v) { v += j; }); + size_t j = rank + 1 + step * size; + std::for_each(in.I8.begin(), in.I8.end(), [&](int8_t &v) { v += static_cast(j); }); + std::for_each(in.I16.begin(), in.I16.end(), [&](int16_t &v) { v += static_cast(j); }); + std::for_each(in.I32.begin(), in.I32.end(), [&](int32_t &v) { v += static_cast(j); }); + std::for_each(in.I64.begin(), in.I64.end(), [&](int64_t &v) { v += static_cast(j); }); + std::for_each(in.U8.begin(), in.U8.end(), [&](uint8_t &v) { v += static_cast(j); }); + std::for_each(in.U16.begin(), in.U16.end(), [&](uint16_t &v) { v += static_cast(j); }); + std::for_each(in.U32.begin(), in.U32.end(), [&](uint32_t &v) { v += static_cast(j); }); + std::for_each(in.U64.begin(), in.U64.end(), [&](uint64_t &v) { v += static_cast(j); }); + std::for_each(in.R32.begin(), in.R32.end(), [&](float &v) { v += static_cast(j); }); + std::for_each(in.R64.begin(), in.R64.end(), [&](double &v) { v += static_cast(j); }); std::for_each(in.R128.begin(), in.R128.end(), [&](long double &v) { v += j; }); std::for_each(in.CR32.begin(), in.CR32.end(), [&](std::complex &v) { From cc807f5768c7dfaed7456c9d8f8e2e48ed6b5667 Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Wed, 30 Aug 2023 09:56:33 -0600 Subject: [PATCH 128/183] clang format --- source/adios2/toolkit/interop/hdf5/HDF5Common.cpp | 5 +++-- source/adios2/toolkit/interop/hdf5/HDF5Common.tcc | 8 ++++---- testing/adios2/engine/SmallTestData.h | 9 ++++++--- 3 files changed, 13 insertions(+), 9 deletions(-) diff --git a/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp b/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp index c07360ce2b..e96fc2bdc0 100644 --- a/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp +++ b/source/adios2/toolkit/interop/hdf5/HDF5Common.cpp @@ -139,8 +139,9 @@ void HDF5Common::ParseParameters(core::IO &io) size_t max_int = static_cast(std::numeric_limits::max()); if (m_ChunkDim > max_int) { - helper::Throw("Toolkit", "interop::hdf5::HDF5Common", - "ParseParameters", "chunkDim.size() is " + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", + "ParseParameters", + "chunkDim.size() is " "too large to be represented by an int"); } diff --git a/source/adios2/toolkit/interop/hdf5/HDF5Common.tcc b/source/adios2/toolkit/interop/hdf5/HDF5Common.tcc index f19205f112..77f946f799 100644 --- a/source/adios2/toolkit/interop/hdf5/HDF5Common.tcc +++ b/source/adios2/toolkit/interop/hdf5/HDF5Common.tcc @@ -46,8 +46,8 @@ void HDF5Common::DefineDataset(core::Variable &variable) size_t max_int = static_cast(std::numeric_limits::max()); if (dimSize > max_int) { - helper::Throw("Toolkit", "interop::hdf5::HDF5Common", - "DefineDataset", "dimSize is too large " + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", "DefineDataset", + "dimSize is too large " "to be represented by an int"); } @@ -184,8 +184,8 @@ void HDF5Common::Write(core::Variable &variable, const T *values) size_t max_int = static_cast(std::numeric_limits::max()); if (dimSize > max_int) { - helper::Throw("Toolkit", "interop::hdf5::HDF5Common", - "Write", "dimSize is too large " + helper::Throw("Toolkit", "interop::hdf5::HDF5Common", "Write", + "dimSize is too large " "to be represented by an int"); } diff --git a/testing/adios2/engine/SmallTestData.h b/testing/adios2/engine/SmallTestData.h index 2bbb126aef..c090dd8f89 100644 --- a/testing/adios2/engine/SmallTestData.h +++ b/testing/adios2/engine/SmallTestData.h @@ -76,9 +76,12 @@ SmallTestData generateNewSmallTestData(SmallTestData in, size_t step, size_t ran std::for_each(in.I32.begin(), in.I32.end(), [&](int32_t &v) { v += static_cast(j); }); std::for_each(in.I64.begin(), in.I64.end(), [&](int64_t &v) { v += static_cast(j); }); std::for_each(in.U8.begin(), in.U8.end(), [&](uint8_t &v) { v += static_cast(j); }); - std::for_each(in.U16.begin(), in.U16.end(), [&](uint16_t &v) { v += static_cast(j); }); - std::for_each(in.U32.begin(), in.U32.end(), [&](uint32_t &v) { v += static_cast(j); }); - std::for_each(in.U64.begin(), in.U64.end(), [&](uint64_t &v) { v += static_cast(j); }); + std::for_each(in.U16.begin(), in.U16.end(), + [&](uint16_t &v) { v += static_cast(j); }); + std::for_each(in.U32.begin(), in.U32.end(), + [&](uint32_t &v) { v += static_cast(j); }); + std::for_each(in.U64.begin(), in.U64.end(), + [&](uint64_t &v) { v += static_cast(j); }); std::for_each(in.R32.begin(), in.R32.end(), [&](float &v) { v += static_cast(j); }); std::for_each(in.R64.begin(), in.R64.end(), [&](double &v) { v += static_cast(j); }); std::for_each(in.R128.begin(), in.R128.end(), [&](long double &v) { v += j; }); From 716e52cc8a369ab33fb89f07d0cd3c4e2f0d987a Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Wed, 30 Aug 2023 12:55:51 -0600 Subject: [PATCH 129/183] Fix more compiler warnings from ompi build --- examples/heatTransfer/write/IO_hdf5_a.cpp | 2 +- examples/hello/hdf5Reader/helloHDF5Reader.cpp | 4 ++-- examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/examples/heatTransfer/write/IO_hdf5_a.cpp b/examples/heatTransfer/write/IO_hdf5_a.cpp index 0ebedb1ef0..2546e03e23 100644 --- a/examples/heatTransfer/write/IO_hdf5_a.cpp +++ b/examples/heatTransfer/write/IO_hdf5_a.cpp @@ -49,7 +49,7 @@ void IO::write(int step, const HeatTransfer &ht, const Settings &s, MPI_Comm com double total_time = MPI_Wtime() - time_start; uint64_t adios_totalsize = 2 * sizeof(int) + 2 * s.ndx * s.ndy * sizeof(double); uint64_t sizeMB = adios_totalsize * s.nproc / 1024 / 1024 / 1024; // size in MB - uint64_t mbs = sizeMB / total_time; + double mbs = sizeMB / total_time; if (s.rank == 0) std::cout << "Step " << step << ": " << m_outputfilename << " " << sizeMB << " " << total_time << "" << mbs << std::endl; diff --git a/examples/hello/hdf5Reader/helloHDF5Reader.cpp b/examples/hello/hdf5Reader/helloHDF5Reader.cpp index d5ade54e72..33a2b7fb01 100644 --- a/examples/hello/hdf5Reader/helloHDF5Reader.cpp +++ b/examples/hello/hdf5Reader/helloHDF5Reader.cpp @@ -23,9 +23,9 @@ void ReadData(adios2::IO h5IO, adios2::Engine &h5Reader, const std::string &name if (var) { - int nDims = var.Shape().size(); + size_t nDims = var.Shape().size(); size_t totalSize = 1; - for (int i = 0; i < nDims; i++) + for (size_t i = 0; i < nDims; i++) { totalSize *= var.Shape()[i]; } diff --git a/examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp b/examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp index a7645f5298..c52d7515e0 100644 --- a/examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp +++ b/examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp @@ -24,7 +24,7 @@ void ReadData(adios2::IO h5IO, adios2::Engine h5Reader, const std::string &name) { size_t nDims = var.Shape().size(); size_t totalSize = 1; - for (int i = 0; i < nDims; i++) + for (size_t i = 0; i < nDims; i++) { totalSize *= var.Shape()[i]; } From b21d7bdc8c3f462ed2547f833f1531086bdf54ca Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Wed, 30 Aug 2023 14:14:37 -0600 Subject: [PATCH 130/183] Add location of hdf5.dll to PATH for windows tests --- scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake | 3 +++ scripts/ci/cmake/ci-win2022-vs2022-serial.cmake | 3 +++ 2 files changed, 6 insertions(+) diff --git a/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake b/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake index 66ce4ea851..8f161ea2cd 100644 --- a/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake +++ b/scripts/ci/cmake/ci-win2022-vs2022-ompi.cmake @@ -3,6 +3,9 @@ set(ENV{CXX} cl) set(ENV{CFLAGS} /WX) set(ENV{CXXFLAGS} /WX) +# Tests need to find hdf5.dll +set(ENV{PATH} "$ENV{PATH};C:/hdf5/HDF5-1.14.2.1-win64/bin") + set(dashboard_cache " ADIOS2_USE_Fortran:BOOL=OFF ADIOS2_USE_MPI:BOOL=ON diff --git a/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake b/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake index 96fb1339b3..a6d06fc702 100644 --- a/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake +++ b/scripts/ci/cmake/ci-win2022-vs2022-serial.cmake @@ -3,6 +3,9 @@ set(ENV{CXX} cl) set(ENV{CFLAGS} /WX) set(ENV{CXXFLAGS} /WX) +# Tests need to find hdf5.dll +set(ENV{PATH} "$ENV{PATH};C:/hdf5/HDF5-1.14.2.1-win64/bin") + set(dashboard_cache " ADIOS2_USE_Fortran:BOOL=OFF ADIOS2_USE_MPI:BOOL=OFF From 2e37421e23e3211a5dcffa1672b870b82fa54fe6 Mon Sep 17 00:00:00 2001 From: Scott Wittenburg Date: Thu, 31 Aug 2023 12:13:40 -0600 Subject: [PATCH 131/183] tests: fix windows 64bit type issues --- .../engine/hdf5/TestNativeHDF5WriteRead.cpp | 54 +++++++++++++++++++ 1 file changed, 54 insertions(+) diff --git a/testing/adios2/engine/hdf5/TestNativeHDF5WriteRead.cpp b/testing/adios2/engine/hdf5/TestNativeHDF5WriteRead.cpp index e75ef25c20..0e2bf580a5 100644 --- a/testing/adios2/engine/hdf5/TestNativeHDF5WriteRead.cpp +++ b/testing/adios2/engine/hdf5/TestNativeHDF5WriteRead.cpp @@ -626,7 +626,11 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read1D8) hdf5Reader.ReadVar("i32", I32.data(), offset, count, arraySize); hdf5Reader.GetVarInfo("i64", gDims, h5Type); +#ifdef _WIN32 + ASSERT_EQ(H5Tequal(h5Type, H5T_NATIVE_LLONG), 1); +#else ASSERT_EQ(H5Tequal(h5Type, H5T_NATIVE_LONG), 1); +#endif ASSERT_EQ(gDims.size(), 1); ASSERT_EQ(gDims[0], globalArraySize); hdf5Reader.ReadVar("i64", I64.data(), offset, count, arraySize); @@ -650,7 +654,11 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read1D8) hdf5Reader.ReadVar("u32", U32.data(), offset, count, arraySize); hdf5Reader.GetVarInfo("u64", gDims, h5Type); +#ifdef _WIN32 + ASSERT_EQ(H5Tequal(h5Type, H5T_NATIVE_ULLONG), 1); +#else ASSERT_EQ(H5Tequal(h5Type, H5T_NATIVE_ULONG), 1); +#endif ASSERT_EQ(gDims.size(), 1); ASSERT_EQ(gDims[0], globalArraySize); hdf5Reader.ReadVar("u64", U64.data(), offset, count, arraySize); @@ -1018,16 +1026,26 @@ TEST_F(HDF5WriteReadTest, HDF5WriteADIOS2HDF5Read1D8) currentTestData.I16.data()); h5writer.CreateAndStoreVar("i32", dimSize, H5T_NATIVE_INT, global_dims, offset, count, currentTestData.I32.data()); +#ifdef _WIN32 + h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LLONG, global_dims, offset, count, + currentTestData.I64.data()); +#else h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LONG, global_dims, offset, count, currentTestData.I64.data()); +#endif h5writer.CreateAndStoreVar("u8", dimSize, H5T_NATIVE_UCHAR, global_dims, offset, count, currentTestData.U8.data()); h5writer.CreateAndStoreVar("u16", dimSize, H5T_NATIVE_USHORT, global_dims, offset, count, currentTestData.U16.data()); h5writer.CreateAndStoreVar("u32", dimSize, H5T_NATIVE_UINT, global_dims, offset, count, currentTestData.U32.data()); +#ifdef _WIN32 + h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULLONG, global_dims, offset, + count, currentTestData.U64.data()); +#else h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULONG, global_dims, offset, count, currentTestData.U64.data()); +#endif h5writer.CreateAndStoreVar("r32", dimSize, H5T_NATIVE_FLOAT, global_dims, offset, count, currentTestData.R32.data()); h5writer.CreateAndStoreVar("r64", dimSize, H5T_NATIVE_DOUBLE, global_dims, offset, @@ -1419,7 +1437,11 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read2D2x4) hdf5Reader.ReadVar("i32", I32.data(), offset, count, arraySize); hdf5Reader.GetVarInfo("i64", gDims, h5Type); +#ifdef _WIN32 + ASSERT_EQ(H5Tequal(h5Type, H5T_NATIVE_LLONG), 1); +#else ASSERT_EQ(H5Tequal(h5Type, H5T_NATIVE_LONG), 1); +#endif ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 2); ASSERT_EQ(gDims[1], globalArraySize); @@ -1447,7 +1469,11 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read2D2x4) hdf5Reader.ReadVar("u32", U32.data(), offset, count, arraySize); hdf5Reader.GetVarInfo("u64", gDims, h5Type); +#ifdef _WIN32 + ASSERT_EQ(H5Tequal(h5Type, H5T_NATIVE_ULLONG), 1); +#else ASSERT_EQ(H5Tequal(h5Type, H5T_NATIVE_ULONG), 1); +#endif ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 2); ASSERT_EQ(gDims[1], globalArraySize); @@ -1833,16 +1859,26 @@ TEST_F(HDF5WriteReadTest, HDF5WriteADIOS2HDF5Read2D2x4) currentTestData.I16.data()); h5writer.CreateAndStoreVar("i32", dimSize, H5T_NATIVE_INT, global_dims, offset, count, currentTestData.I32.data()); +#ifdef _WIN32 + h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LLONG, global_dims, offset, count, + currentTestData.I64.data()); +#else h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LONG, global_dims, offset, count, currentTestData.I64.data()); +#endif h5writer.CreateAndStoreVar("u8", dimSize, H5T_NATIVE_UCHAR, global_dims, offset, count, currentTestData.U8.data()); h5writer.CreateAndStoreVar("u16", dimSize, H5T_NATIVE_USHORT, global_dims, offset, count, currentTestData.U16.data()); h5writer.CreateAndStoreVar("u32", dimSize, H5T_NATIVE_UINT, global_dims, offset, count, currentTestData.U32.data()); +#ifdef _WIN32 + h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULLONG, global_dims, offset, + count, currentTestData.U64.data()); +#else h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULONG, global_dims, offset, count, currentTestData.U64.data()); +#endif h5writer.CreateAndStoreVar("r32", dimSize, H5T_NATIVE_FLOAT, global_dims, offset, count, currentTestData.R32.data()); h5writer.CreateAndStoreVar("r64", dimSize, H5T_NATIVE_DOUBLE, global_dims, offset, @@ -2229,7 +2265,11 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read2D4x2) hdf5Reader.ReadVar("i32", I32.data(), offset, count, arraySize); hdf5Reader.GetVarInfo("i64", gDims, h5Type); +#ifdef _WIN32 + ASSERT_EQ(H5Tequal(h5Type, H5T_NATIVE_LLONG), 1); +#else ASSERT_EQ(H5Tequal(h5Type, H5T_NATIVE_LONG), 1); +#endif ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 4); ASSERT_EQ(gDims[1], globalArraySize); @@ -2257,7 +2297,11 @@ TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read2D4x2) hdf5Reader.ReadVar("u32", U32.data(), offset, count, arraySize); hdf5Reader.GetVarInfo("u64", gDims, h5Type); +#ifdef _WIN32 + ASSERT_EQ(H5Tequal(h5Type, H5T_NATIVE_ULLONG), 1); +#else ASSERT_EQ(H5Tequal(h5Type, H5T_NATIVE_ULONG), 1); +#endif ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 4); ASSERT_EQ(gDims[1], globalArraySize); @@ -2639,16 +2683,26 @@ TEST_F(HDF5WriteReadTest, HDF5WriteADIOS2HDF5Read2D4x2) currentTestData.I16.data()); h5writer.CreateAndStoreVar("i32", dimSize, H5T_NATIVE_INT, global_dims, offset, count, currentTestData.I32.data()); +#ifdef _WIN32 + h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LLONG, global_dims, offset, count, + currentTestData.I64.data()); +#else h5writer.CreateAndStoreVar("i64", dimSize, H5T_NATIVE_LONG, global_dims, offset, count, currentTestData.I64.data()); +#endif h5writer.CreateAndStoreVar("u8", dimSize, H5T_NATIVE_UCHAR, global_dims, offset, count, currentTestData.U8.data()); h5writer.CreateAndStoreVar("u16", dimSize, H5T_NATIVE_USHORT, global_dims, offset, count, currentTestData.U16.data()); h5writer.CreateAndStoreVar("u32", dimSize, H5T_NATIVE_UINT, global_dims, offset, count, currentTestData.U32.data()); +#ifdef _WIN32 + h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULLONG, global_dims, offset, + count, currentTestData.U64.data()); +#else h5writer.CreateAndStoreVar("u64", dimSize, H5T_NATIVE_ULONG, global_dims, offset, count, currentTestData.U64.data()); +#endif h5writer.CreateAndStoreVar("r32", dimSize, H5T_NATIVE_FLOAT, global_dims, offset, count, currentTestData.R32.data()); h5writer.CreateAndStoreVar("r64", dimSize, H5T_NATIVE_DOUBLE, global_dims, offset, From 458fea1615afb8c3660e3afc6b5e9e7187fb9eff Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Fri, 1 Sep 2023 10:28:10 -0400 Subject: [PATCH 132/183] Limit testing changes to BP5 --- .../adios2/engine/bp/TestBPWriteReadLocalVariables.cpp | 9 ++++++++- 1 file changed, 8 insertions(+), 1 deletion(-) diff --git a/testing/adios2/engine/bp/TestBPWriteReadLocalVariables.cpp b/testing/adios2/engine/bp/TestBPWriteReadLocalVariables.cpp index 225334a307..9fd6c2d71a 100644 --- a/testing/adios2/engine/bp/TestBPWriteReadLocalVariables.cpp +++ b/testing/adios2/engine/bp/TestBPWriteReadLocalVariables.cpp @@ -210,8 +210,15 @@ TEST_F(BPWriteReadLocalVariables, ADIOS2BPWriteReadLocal1D) EXPECT_EQ(rankLocalValueData[r], static_cast(r)); } - if (mpiSize > 1) + if ((engineName != "BP3") && (engineName != "BP4") && (mpiSize > 1)) { + // This test exposes a difference in behaviour between + // BP3/4 and BP5. BP5 resets the variables to their + // default state at each BeginStep where prior engines + // do not. Therefore setting the block selection in + // this portion causes failures in future timesteps in + // prior engines, but not in BP5. So we'll just test + // BP5 for the moment. for (size_t r = 0; r < rankLocalValueData.size(); ++r) { int32_t val; From cadc550937fd5e8224d6f7b3713d4f98cbac68b0 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Mon, 4 Sep 2023 17:20:08 -0400 Subject: [PATCH 133/183] gha,ci: update checkout to v4 --- .github/workflows/everything.yml | 30 +++++++++++++++--------------- 1 file changed, 15 insertions(+), 15 deletions(-) diff --git a/.github/workflows/everything.yml b/.github/workflows/everything.yml index ea3e35d732..9590a845cb 100644 --- a/.github/workflows/everything.yml +++ b/.github/workflows/everything.yml @@ -51,7 +51,7 @@ jobs: outputs: num_code_changes: ${{ steps.get_code_changes.outputs.num_code_changes }} steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: fetch-depth: 0 - name: Check for appropriately named topic branch @@ -80,10 +80,10 @@ jobs: image: ghcr.io/ornladios/adios2:ci-formatting steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: path: gha - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: ref: ${{ github.event.pull_request.head.sha }} path: source @@ -153,10 +153,10 @@ jobs: shared: static parallel: serial steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: path: gha - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: ref: ${{ github.event.pull_request.head.sha }} path: source @@ -218,10 +218,10 @@ jobs: parallel: [ompi] steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: path: gha - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: ref: ${{ github.event.pull_request.head.sha }} path: source @@ -285,10 +285,10 @@ jobs: compiler: xcode13_4_1 steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: path: gha - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: ref: ${{ github.event.pull_request.head.sha }} path: source @@ -352,10 +352,10 @@ jobs: shell: bash steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: path: gha - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: ref: ${{ github.event.pull_request.head.sha }} path: source @@ -386,7 +386,7 @@ jobs: baseos: [ubuntu-bionic] steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: ref: ${{ github.event.pull_request.head.sha }} path: ci-source @@ -465,7 +465,7 @@ jobs: shell: bash -c "docker exec adios2-ci bash --login -e $(echo {0} | sed 's|/home/runner/work|/__w|g')" steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: repository: ${{ matrix.repo }} ref: ${{ matrix.ref }} @@ -523,10 +523,10 @@ jobs: language: [ 'cpp' ] steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: path: gha - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: ref: ${{ github.event.pull_request.head.sha }} path: source From 911a97c3c363e8c38b698498ee11704331e0b7e2 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Sat, 9 Sep 2023 07:30:21 -0400 Subject: [PATCH 134/183] Mod to keep MinBlocksInfo private to BP5Writer, not reuse Engine.h API. --- source/adios2/common/ADIOSTypes.cpp | 50 ++++++++++++++ source/adios2/common/ADIOSTypes.h | 3 + source/adios2/engine/bp5/BP5Writer.cpp | 27 +++++++- source/adios2/engine/bp5/BP5Writer.h | 2 + .../toolkit/format/bp5/BP5Serializer.cpp | 69 ++++++++++++++++++- .../adios2/toolkit/format/bp5/BP5Serializer.h | 4 +- source/adios2/toolkit/format/buffer/BufferV.h | 2 + .../toolkit/format/buffer/chunk/ChunkV.cpp | 24 +++++++ .../toolkit/format/buffer/chunk/ChunkV.h | 1 + .../toolkit/format/buffer/malloc/MallocV.cpp | 2 + .../toolkit/format/buffer/malloc/MallocV.h | 1 + 11 files changed, 181 insertions(+), 4 deletions(-) diff --git a/source/adios2/common/ADIOSTypes.cpp b/source/adios2/common/ADIOSTypes.cpp index dd8f1460af..bc507590fa 100644 --- a/source/adios2/common/ADIOSTypes.cpp +++ b/source/adios2/common/ADIOSTypes.cpp @@ -390,4 +390,54 @@ int TypeElementSize(DataType adiosvartype) } } +static void PrintMBI(std::ostream &os, const MinBlockInfo &blk, int Dims) +{ + os << "Writer: " << blk.WriterID << ", Blk: " << blk.BlockID << ", Start: {"; + if ((Dims == 0) || (blk.Start == NULL)) + os << "NULL"; + else + { + for (int i = 0; i < Dims; i++) + { + os << blk.Start[i]; + if (i < Dims - 1) + os << ", "; + } + } + os << "}, Count: {"; + + if ((Dims == 0) || (blk.Count == NULL)) + os << "NULL"; + else + { + for (int i = 0; i < Dims; i++) + { + os << blk.Count[i]; + if (i < Dims - 1) + os << ", "; + } + } + os << "}, Data: " << (void *)blk.BufferP << std::endl; +} + +void PrintMVI(std::ostream &os, const MinVarInfo &mvi) +{ + os << "Step: " << mvi.Step << " Dims: " << mvi.Dims << " Shape: {"; + if ((mvi.Dims == 0) || (mvi.Shape == NULL)) + os << "NULL"; + else + { + for (int i = 0; i < mvi.Dims; i++) + { + os << mvi.Shape[i]; + if (i < mvi.Dims - 1) + os << ", "; + } + } + os << "}, BlockCount: " << mvi.BlocksInfo.size() << " "; + for (const auto &blk : mvi.BlocksInfo) + PrintMBI(os, blk, mvi.Dims); + os << std::endl; +} + } // end namespace adios2 diff --git a/source/adios2/common/ADIOSTypes.h b/source/adios2/common/ADIOSTypes.h index 63a33d1a5c..7697c34624 100644 --- a/source/adios2/common/ADIOSTypes.h +++ b/source/adios2/common/ADIOSTypes.h @@ -214,6 +214,7 @@ struct MinBlockInfo MinMaxStruct MinMax; void *BufferP = NULL; }; + struct MinVarInfo { size_t Step; @@ -229,6 +230,8 @@ struct MinVarInfo } }; +void PrintMVI(std::ostream &os, const MinVarInfo &mvi); + // adios defaults #ifdef _WIN32 const std::string DefaultFileLibrary("fstream"); diff --git a/source/adios2/engine/bp5/BP5Writer.cpp b/source/adios2/engine/bp5/BP5Writer.cpp index c0b6462f7a..6ee1bac5be 100644 --- a/source/adios2/engine/bp5/BP5Writer.cpp +++ b/source/adios2/engine/bp5/BP5Writer.cpp @@ -497,8 +497,6 @@ void BP5Writer::MarshalAttributes() void BP5Writer::EndStep() { - /* Seconds ts = Now() - m_EngineStart; - std::cout << "END STEP starts at: " << ts.count() << std::endl; */ m_BetweenStepPairs = false; PERFSTUBS_SCOPED_TIMER("BP5Writer::EndStep"); m_Profiler.Start("ES"); @@ -506,6 +504,26 @@ void BP5Writer::EndStep() m_Profiler.Start("ES_close"); MarshalAttributes(); +#ifdef NOT_DEF + const auto &vars = m_IO.GetVariables(); + for (const auto &varPair : vars) + { + auto baseVar = varPair.second.get(); + auto mvi = MinBlocksInfo(*baseVar); + if (mvi) + { + std::cout << "Info for Variable " << varPair.first << std::endl; + PrintMVI(std::cout, *mvi); + if (baseVar->m_Type == DataType::Double) + std::cout << "Double value is " << *((double *)mvi->BlocksInfo[0].BufferP) + << std::endl; + delete mvi; + } + else + std::cout << "Variable " << varPair.first << " not written on this step" << std::endl; + } +#endif + // true: advances step auto TSInfo = m_BP5Serializer.CloseTimestep((int)m_WriterStep, m_Parameters.AsyncWrite || m_Parameters.DirectIO); @@ -668,6 +686,11 @@ void BP5Writer::Init() InitBPBuffer(); } +MinVarInfo *BP5Writer::MinBlocksInfo(const core::VariableBase &Var) +{ + return m_BP5Serializer.MinBlocksInfo(Var); +} + void BP5Writer::InitParameters() { ParseParams(m_IO, m_Parameters); diff --git a/source/adios2/engine/bp5/BP5Writer.h b/source/adios2/engine/bp5/BP5Writer.h index 7d6ad47a04..454454c5cf 100644 --- a/source/adios2/engine/bp5/BP5Writer.h +++ b/source/adios2/engine/bp5/BP5Writer.h @@ -115,6 +115,8 @@ class BP5Writer : public BP5Engine, public core::Engine */ void NotifyEngineAttribute(std::string name, AttributeBase *Attr, void *data) noexcept; + MinVarInfo *MinBlocksInfo(const VariableBase &); + void EnterComputationBlock() noexcept; /** Inform about computation block through User->ADIOS->IO */ void ExitComputationBlock() noexcept; diff --git a/source/adios2/toolkit/format/bp5/BP5Serializer.cpp b/source/adios2/toolkit/format/bp5/BP5Serializer.cpp index aad15ae794..8b10c30b46 100644 --- a/source/adios2/toolkit/format/bp5/BP5Serializer.cpp +++ b/source/adios2/toolkit/format/bp5/BP5Serializer.cpp @@ -80,7 +80,7 @@ void BP5Serializer::Init() ((BP5MetadataInfoStruct *)MetadataBuf)->BitField = (std::size_t *)malloc(sizeof(size_t)); ((BP5MetadataInfoStruct *)MetadataBuf)->DataBlockSize = 0; } -BP5Serializer::BP5WriterRec BP5Serializer::LookupWriterRec(void *Key) +BP5Serializer::BP5WriterRec BP5Serializer::LookupWriterRec(void *Key) const { for (int i = 0; i < Info.RecCount; i++) { @@ -858,6 +858,73 @@ void BP5Serializer::Marshal(void *Variable, const char *Name, const DataType Typ } } +MinVarInfo *BP5Serializer::MinBlocksInfo(const core::VariableBase &Var) +{ + BP5WriterRec VarRec = LookupWriterRec((void *)&Var); + + if (!VarRec) + return NULL; + + MinVarInfo *MV = new MinVarInfo((int)VarRec->DimCount, (size_t *)Var.m_Shape.data()); + + BP5MetadataInfoStruct *MBase = (struct BP5MetadataInfoStruct *)MetadataBuf; + + int AlreadyWritten = BP5BitfieldTest(MBase, VarRec->FieldID); + + if (!AlreadyWritten) + return MV; + + if (Var.m_SingleValue) + { + // single value case + MinBlockInfo Blk; + Blk.MinMax.Init(Var.m_Type); + Blk.WriterID = (int)-1; + Blk.BlockID = 0; + Blk.Start = NULL; + Blk.Count = NULL; + if (Var.m_Type != DataType::String) + { + Blk.BufferP = (char *)(MetadataBuf) + VarRec->MetaOffset; + } + else + { + char **StrPtr = (char **)((char *)(MetadataBuf) + VarRec->MetaOffset); + Blk.BufferP = *StrPtr; + } + MV->BlocksInfo.push_back(Blk); + } + else + { + // everything else + MetaArrayRec *MetaEntry = (MetaArrayRec *)((char *)(MetadataBuf) + VarRec->MetaOffset); + for (size_t b = 0; b < MetaEntry->BlockCount; b++) + { + MinBlockInfo Blk; + Blk.MinMax.Init(Var.m_Type); + Blk.WriterID = (int)-1; + Blk.BlockID = 0; + Blk.Start = NULL; + if (MetaEntry->Offsets) + { + Blk.Start = &(MetaEntry->Offsets[b * MetaEntry->Dims]); + } + Blk.Count = &(MetaEntry->Count[b * MetaEntry->Dims]); + if (MetaEntry->DataBlockLocation[b] < m_PriorDataBufferSizeTotal) + { + Blk.BufferP = (void *)(intptr_t)(-1); // data is out of memory + } + else + { + Blk.BufferP = CurDataBuffer->GetPtr(MetaEntry->DataBlockLocation[b] - + m_PriorDataBufferSizeTotal); + } + MV->BlocksInfo.push_back(Blk); + } + } + return MV; +} + void BP5Serializer::MarshalAttribute(const char *Name, const DataType Type, size_t ElemSize, size_t ElemCount, const void *Data) { diff --git a/source/adios2/toolkit/format/bp5/BP5Serializer.h b/source/adios2/toolkit/format/bp5/BP5Serializer.h index 14c5d3f6e1..1974972ad2 100644 --- a/source/adios2/toolkit/format/bp5/BP5Serializer.h +++ b/source/adios2/toolkit/format/bp5/BP5Serializer.h @@ -127,6 +127,8 @@ class BP5Serializer : virtual public BP5Base size_t DebugGetDataBufferSize() const; + MinVarInfo *MinBlocksInfo(const core::VariableBase &Var); + int m_StatsLevel = 1; /* Variables to help appending to existing file */ @@ -204,7 +206,7 @@ class BP5Serializer : virtual public BP5Base size_t m_PriorDataBufferSizeTotal = 0; - BP5WriterRec LookupWriterRec(void *Key); + BP5WriterRec LookupWriterRec(void *Key) const; BP5WriterRec CreateWriterRec(void *Variable, const char *Name, DataType Type, size_t ElemSize, size_t DimCount); void ValidateWriterRec(BP5WriterRec Rec, void *Variable); diff --git a/source/adios2/toolkit/format/buffer/BufferV.h b/source/adios2/toolkit/format/buffer/BufferV.h index 0436ae363d..0ca1e3eac0 100644 --- a/source/adios2/toolkit/format/buffer/BufferV.h +++ b/source/adios2/toolkit/format/buffer/BufferV.h @@ -63,6 +63,8 @@ class BufferV virtual void *GetPtr(int bufferIdx, size_t posInBuffer) = 0; + virtual void *GetPtr(size_t overallPosInVector) = 0; + protected: std::vector zero; const bool m_AlwaysCopy = false; diff --git a/source/adios2/toolkit/format/buffer/chunk/ChunkV.cpp b/source/adios2/toolkit/format/buffer/chunk/ChunkV.cpp index 30fb427fe0..4f4f04fc05 100644 --- a/source/adios2/toolkit/format/buffer/chunk/ChunkV.cpp +++ b/source/adios2/toolkit/format/buffer/chunk/ChunkV.cpp @@ -255,6 +255,30 @@ void *ChunkV::GetPtr(int bufferIdx, size_t posInBuffer) } } +void *ChunkV::GetPtr(size_t OverallPosInBuffer) +{ + int bufferIdx = 0; + if (DataV.size() == 0) + return nullptr; + while (DataV[bufferIdx].Size <= OverallPosInBuffer) + { + OverallPosInBuffer -= DataV[bufferIdx].Size; + bufferIdx++; + if (static_cast(bufferIdx) > DataV.size()) + { + helper::Throw( + "Toolkit", "format::ChunkV", "GetPtr", + "ChunkV::GetPtr(" + std::to_string(OverallPosInBuffer) + + ") refers to a non-existing or deferred memory chunk."); + return nullptr; + } + } + if (DataV[bufferIdx].External) + return ((char *)DataV[bufferIdx].External) + OverallPosInBuffer; + + return (void *)((char *)DataV[bufferIdx].Base + OverallPosInBuffer); +} + std::vector ChunkV::DataVec() noexcept { std::vector iov(DataV.size()); diff --git a/source/adios2/toolkit/format/buffer/chunk/ChunkV.h b/source/adios2/toolkit/format/buffer/chunk/ChunkV.h index ef65c08665..fc129243fe 100644 --- a/source/adios2/toolkit/format/buffer/chunk/ChunkV.h +++ b/source/adios2/toolkit/format/buffer/chunk/ChunkV.h @@ -38,6 +38,7 @@ class ChunkV : public BufferV virtual void DownsizeLastAlloc(const size_t oldSize, const size_t newSize); virtual void *GetPtr(int bufferIdx, size_t posInBuffer); + virtual void *GetPtr(size_t OverallPosInBuffer); void CopyDataToBuffer(const size_t size, const void *buf, size_t pos, MemorySpace MemSpace); diff --git a/source/adios2/toolkit/format/buffer/malloc/MallocV.cpp b/source/adios2/toolkit/format/buffer/malloc/MallocV.cpp index 2ba21dca80..90359071fb 100644 --- a/source/adios2/toolkit/format/buffer/malloc/MallocV.cpp +++ b/source/adios2/toolkit/format/buffer/malloc/MallocV.cpp @@ -157,6 +157,8 @@ void *MallocV::GetPtr(int bufferIdx, size_t posInBuffer) } } +void *MallocV::GetPtr(size_t posInBuffer) { return m_InternalBlock + posInBuffer; } + std::vector MallocV::DataVec() noexcept { std::vector iov(DataV.size()); diff --git a/source/adios2/toolkit/format/buffer/malloc/MallocV.h b/source/adios2/toolkit/format/buffer/malloc/MallocV.h index 6553271099..eba6ba9d09 100644 --- a/source/adios2/toolkit/format/buffer/malloc/MallocV.h +++ b/source/adios2/toolkit/format/buffer/malloc/MallocV.h @@ -42,6 +42,7 @@ class MallocV : public BufferV void DownsizeLastAlloc(const size_t oldSize, const size_t newSize); virtual void *GetPtr(int bufferIdx, size_t posInBuffer); + virtual void *GetPtr(size_t posInBuffer); private: char *m_InternalBlock = NULL; From 69ac221eefec73239c51d289da78dd4b44fd0b58 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Sat, 9 Sep 2023 07:53:58 -0400 Subject: [PATCH 135/183] Mod not to overload to make some compilers happy --- source/adios2/engine/bp5/BP5Writer.cpp | 4 ++-- source/adios2/engine/bp5/BP5Writer.h | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/source/adios2/engine/bp5/BP5Writer.cpp b/source/adios2/engine/bp5/BP5Writer.cpp index 6ee1bac5be..465a44d959 100644 --- a/source/adios2/engine/bp5/BP5Writer.cpp +++ b/source/adios2/engine/bp5/BP5Writer.cpp @@ -509,7 +509,7 @@ void BP5Writer::EndStep() for (const auto &varPair : vars) { auto baseVar = varPair.second.get(); - auto mvi = MinBlocksInfo(*baseVar); + auto mvi = WriterMinBlocksInfo(*baseVar); if (mvi) { std::cout << "Info for Variable " << varPair.first << std::endl; @@ -686,7 +686,7 @@ void BP5Writer::Init() InitBPBuffer(); } -MinVarInfo *BP5Writer::MinBlocksInfo(const core::VariableBase &Var) +MinVarInfo *BP5Writer::WriterMinBlocksInfo(const core::VariableBase &Var) { return m_BP5Serializer.MinBlocksInfo(Var); } diff --git a/source/adios2/engine/bp5/BP5Writer.h b/source/adios2/engine/bp5/BP5Writer.h index 454454c5cf..72d0602217 100644 --- a/source/adios2/engine/bp5/BP5Writer.h +++ b/source/adios2/engine/bp5/BP5Writer.h @@ -115,7 +115,7 @@ class BP5Writer : public BP5Engine, public core::Engine */ void NotifyEngineAttribute(std::string name, AttributeBase *Attr, void *data) noexcept; - MinVarInfo *MinBlocksInfo(const VariableBase &); + MinVarInfo *WriterMinBlocksInfo(const VariableBase &); void EnterComputationBlock() noexcept; /** Inform about computation block through User->ADIOS->IO */ From 9cd8e625ced55eec456404094e90a89214a56a44 Mon Sep 17 00:00:00 2001 From: Vicente Adolfo Bolea Sanchez Date: Mon, 11 Sep 2023 18:50:39 -0400 Subject: [PATCH 136/183] yaml-cpp: support 0.8.0 version --- thirdparty/CMakeLists.txt | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/thirdparty/CMakeLists.txt b/thirdparty/CMakeLists.txt index 72646b85e9..c184d74d24 100644 --- a/thirdparty/CMakeLists.txt +++ b/thirdparty/CMakeLists.txt @@ -71,12 +71,20 @@ add_subdirectory(nlohmann_json) adios2_add_thirdparty_target(nlohmann_json nlohmann_json_wrapper) if(ADIOS2_USE_EXTERNAL_YAMLCPP) - find_package(yaml-cpp REQUIRED) + find_package(yaml-cpp 0.7.0 REQUIRED) else() add_subdirectory(yaml-cpp) endif() + adios2_add_thirdparty_target(yaml-cpp yaml-cpp) +# YAML-cpp does not add the incdir/libdir to its target rather it exposes it +# through the cmake variables YAML_CPP_INCLUDE_DIR and YAML_CPP_LIBRARY_DIR +if(yaml-cpp_VERSION VERSION_GREATER_EQUAL 0.8) + target_include_directories(adios2::thirdparty::yaml-cpp INTERFACE ${YAML_CPP_INCLUDE_DIR}) + target_link_directories(adios2::thirdparty::yaml-cpp INTERFACE ${YAML_CPP_LIBRARY_DIR}) +endif() + if(WIN32) add_subdirectory(mingw-w64) endif() From a8b69d8172095d61f86ee013562347a1f5267d4c Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Tue, 12 Sep 2023 14:55:11 -0400 Subject: [PATCH 137/183] Delete experimental examples They are no longer compiling, and nobody has ever used them over the past 5 years. --- CMakeLists.txt | 1 - bindings/Matlab/README.txt | 2 +- examples/CMakeLists.txt | 3 - examples/experimental/CMakeLists.txt | 6 - .../experimental/runtimeconfig/CMakeLists.txt | 1 - .../runtimeconfig/configs/grandSchema.xml | 76 ------------ .../configs/multipleIOResolutions.xml | 24 ---- .../configs/multipleTransformedVariables.xml | 26 ---- .../runtimeconfig/hello/CMakeLists.txt | 13 -- .../runtimeconfig/hello/helloBPWriter.xml | 26 ---- .../runtimeconfig/hello/helloBPWriterXML.cpp | 112 ------------------ .../runtimeconfig/hello/helloBPWriterXML.py | 36 ------ .../hello/helloBPWriterXML_nompi.cpp | 93 --------------- .../hello/helloBPWriterXML_nompi.py | 30 ----- scripts/runconf/runconf_olcf.sh | 3 - 15 files changed, 1 insertion(+), 451 deletions(-) delete mode 100644 examples/experimental/CMakeLists.txt delete mode 100644 examples/experimental/runtimeconfig/CMakeLists.txt delete mode 100644 examples/experimental/runtimeconfig/configs/grandSchema.xml delete mode 100644 examples/experimental/runtimeconfig/configs/multipleIOResolutions.xml delete mode 100644 examples/experimental/runtimeconfig/configs/multipleTransformedVariables.xml delete mode 100644 examples/experimental/runtimeconfig/hello/CMakeLists.txt delete mode 100644 examples/experimental/runtimeconfig/hello/helloBPWriter.xml delete mode 100644 examples/experimental/runtimeconfig/hello/helloBPWriterXML.cpp delete mode 100644 examples/experimental/runtimeconfig/hello/helloBPWriterXML.py delete mode 100644 examples/experimental/runtimeconfig/hello/helloBPWriterXML_nompi.cpp delete mode 100644 examples/experimental/runtimeconfig/hello/helloBPWriterXML_nompi.py diff --git a/CMakeLists.txt b/CMakeLists.txt index f0f6941024..d3f223ed14 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -319,7 +319,6 @@ add_subdirectory(plugins) # Examples #------------------------------------------------------------------------------# option(ADIOS2_BUILD_EXAMPLES "Build examples" ON) -option(ADIOS2_BUILD_EXAMPLES_EXPERIMENTAL "Build experimental examples" OFF) if(ADIOS2_BUILD_EXAMPLES) add_subdirectory(examples) endif() diff --git a/bindings/Matlab/README.txt b/bindings/Matlab/README.txt index 4c43c89ffe..7f19136624 100644 --- a/bindings/Matlab/README.txt +++ b/bindings/Matlab/README.txt @@ -43,5 +43,5 @@ $ cd $ git pull $ mkdir build.lean $ cd build.lean -$ cmake -DCMAKE_INSTALL_PREFIX=/opt/adios/lean -DADIOS2_USE_MPI=OFF -DADIOS2_USE_Fortran=OFF -DADIOS2_USE_Python=OFF -DADIOS2_BUILD_EXAMPLES_EXPERIMENTAL=OFF -DCMAKE_BUILD_TYPE=RelWithDebInfo -DADIOS2_ENABLE_PIC=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DBUILD_TESTING=OFF -DADIOS2_USE_SST=OFF -DADIOS2_USE_BZip2=OFF -DADIOS2_USE_DataMan=OFF .. +$ cmake -DCMAKE_INSTALL_PREFIX=/opt/adios/lean -DADIOS2_USE_MPI=OFF -DADIOS2_USE_Fortran=OFF -DADIOS2_USE_Python=OFF -DCMAKE_BUILD_TYPE=RelWithDebInfo -DADIOS2_ENABLE_PIC=ON -DCMAKE_POSITION_INDEPENDENT_CODE=ON -DBUILD_TESTING=OFF -DADIOS2_USE_SST=OFF -DADIOS2_USE_BZip2=OFF -DADIOS2_USE_DataMan=OFF .. diff --git a/examples/CMakeLists.txt b/examples/CMakeLists.txt index e14d76bb05..3187dc3f49 100644 --- a/examples/CMakeLists.txt +++ b/examples/CMakeLists.txt @@ -15,9 +15,6 @@ if(ADIOS2_HAVE_MPI) add_subdirectory(heatTransfer) endif() -if(ADIOS2_BUILD_EXAMPLES_EXPERIMENTAL) - add_subdirectory(experimental) -endif() if(ADIOS2_HAVE_CUDA OR ADIOS2_HAVE_Kokkos_CUDA) add_subdirectory(cuda) diff --git a/examples/experimental/CMakeLists.txt b/examples/experimental/CMakeLists.txt deleted file mode 100644 index 23240d2bae..0000000000 --- a/examples/experimental/CMakeLists.txt +++ /dev/null @@ -1,6 +0,0 @@ -#------------------------------------------------------------------------------# -# Distributed under the OSI-approved Apache License, Version 2.0. See -# accompanying file Copyright.txt for details. -#------------------------------------------------------------------------------# - -add_subdirectory(runtimeconfig) diff --git a/examples/experimental/runtimeconfig/CMakeLists.txt b/examples/experimental/runtimeconfig/CMakeLists.txt deleted file mode 100644 index 33bde8ad15..0000000000 --- a/examples/experimental/runtimeconfig/CMakeLists.txt +++ /dev/null @@ -1 +0,0 @@ -add_subdirectory(hello) diff --git a/examples/experimental/runtimeconfig/configs/grandSchema.xml b/examples/experimental/runtimeconfig/configs/grandSchema.xml deleted file mode 100644 index 71d80bd30b..0000000000 --- a/examples/experimental/runtimeconfig/configs/grandSchema.xml +++ /dev/null @@ -1,76 +0,0 @@ - - - - - - - - BlockSize100K=3; - - - Tolerance=1e-3; - - - - - - - Threads=4; - Verbose=4; - ProfileUnits=Microseconds; - MaxBufferSize=20Mb; - InitialBufferSize=1Mb; - BufferGrowthFactor=2; - - - - ProfileUnits=Microseconds; - Library=stdio; - CacheSize=8192; - CollectiveMetadata=Yes; - - - - ProfileUnits=Microseconds; - Library=hdf5; - Name=data.h5; - - - - ProfileUnits=Microseconds; - Library=SystemV; - Name=data.shmem; - SetSize=10Mb; - - - - ProfileUnits=Microseconds; - Library=POSIX; - Name=/bb_location/data.bb; - SetSize=10Mb; - - - - ProfileUnits=Microseconds; - IPAddress=128.219.4.85; - Port=500; - Library=zmq; - CacheSize=8192; - - - - ProfileUnits=Microseconds; - Library=ibverbs; - Port=18515; - IBPort=1; - SetSize=1Mb; - TXDepth=100; - SocketFD=-1; - ServerName=NULL; - RemoteConnection=NULL; - IBDev=NULL; - - - - - \ No newline at end of file diff --git a/examples/experimental/runtimeconfig/configs/multipleIOResolutions.xml b/examples/experimental/runtimeconfig/configs/multipleIOResolutions.xml deleted file mode 100644 index 28fe854084..0000000000 --- a/examples/experimental/runtimeconfig/configs/multipleIOResolutions.xml +++ /dev/null @@ -1,24 +0,0 @@ - - - - - - - Tolerance=1e-2; - - - - - - - - - - Tolerance=1e-5; - - - - - - - \ No newline at end of file diff --git a/examples/experimental/runtimeconfig/configs/multipleTransformedVariables.xml b/examples/experimental/runtimeconfig/configs/multipleTransformedVariables.xml deleted file mode 100644 index 8338320d5c..0000000000 --- a/examples/experimental/runtimeconfig/configs/multipleTransformedVariables.xml +++ /dev/null @@ -1,26 +0,0 @@ - - - - - - Tolerance=1e-2; - - - - - - - - - - - Tolerance=1e-5; - - - - - - - - - diff --git a/examples/experimental/runtimeconfig/hello/CMakeLists.txt b/examples/experimental/runtimeconfig/hello/CMakeLists.txt deleted file mode 100644 index dac3c8499f..0000000000 --- a/examples/experimental/runtimeconfig/hello/CMakeLists.txt +++ /dev/null @@ -1,13 +0,0 @@ -add_executable(helloBPWriterXML helloBPWriterXML_nompi.cpp) -target_link_libraries(helloBPWriterXML adios2::cxx11) -target_compile_definitions(helloBPWriterXML PRIVATE - -DDEFAULT_CONFIG=${CMAKE_CURRENT_SOURCE_DIR}/helloBPWriter.xml -) - -if(ADIOS2_HAVE_MPI) - add_executable(helloBPWriterXML_mpi helloBPWriterXML.cpp) - target_link_libraries(helloBPWriterXML_mpi adios2::cxx11_mpi MPI::MPI_C) - target_compile_definitions(helloBPWriterXML_mpi PRIVATE - -DDEFAULT_CONFIG=${CMAKE_CURRENT_SOURCE_DIR}/helloBPWriter.xml - ) -endif() diff --git a/examples/experimental/runtimeconfig/hello/helloBPWriter.xml b/examples/experimental/runtimeconfig/hello/helloBPWriter.xml deleted file mode 100644 index 27a01d5db8..0000000000 --- a/examples/experimental/runtimeconfig/hello/helloBPWriter.xml +++ /dev/null @@ -1,26 +0,0 @@ - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/examples/experimental/runtimeconfig/hello/helloBPWriterXML.cpp b/examples/experimental/runtimeconfig/hello/helloBPWriterXML.cpp deleted file mode 100644 index f6634b8ac4..0000000000 --- a/examples/experimental/runtimeconfig/hello/helloBPWriterXML.cpp +++ /dev/null @@ -1,112 +0,0 @@ -/* - * Distributed under the OSI-approved Apache License, Version 2.0. See - * accompanying file Copyright.txt for details. - * - * helloBPWriter.cpp: Simple self-descriptive example of how to write a variable - * to a BP File that lives in several MPI processes. - * - * Created on: Feb 16, 2017 - * Author: William F Godoy godoywf@ornl.gov - */ - -#include //std::ios_base::failure -#include //std::cout -#include -#include //std::invalid_argument std::exception -#include - -#include - -#define str_helper(X) #X -#define str(X) str_helper(X) - -#ifndef DEFAULT_CONFIG -#define DEFAULT_CONFIG helloBPWriter.xml -#endif -#define DEFAULT_CONFIG_STR str(DEFAULT_CONFIG) - -int main(int argc, char *argv[]) -{ - int provided; - - // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP - MPI_Init_thread(&argc, &argv, MPI_THREAD_MULTIPLE, &provided); - int rank, size; - MPI_Comm_rank(MPI_COMM_WORLD, &rank); - MPI_Comm_size(MPI_COMM_WORLD, &size); - - std::string configFile; - if (argc == 1) - { - configFile = DEFAULT_CONFIG_STR; - } - else if (argc == 2) - { - configFile = argv[1]; - } - else - { - if (rank == 0) - { - std::cerr << "Usage: " << argv[0] << " [/path/to/config.xml]" << std::endl; - } - return 1; - } - if (rank == 0) - { - std::cout << "Using config file: " << configFile << std::endl; - } - - /** Application variable */ - std::vector myFloats = {0, 1, 2, 3, 4, 5, 6, 7, 8, 9}; - const std::size_t Nx = myFloats.size(); - - try - { - /** ADIOS class factory of IO class objects */ - adios2::ADIOS adios(configFile, MPI_COMM_WORLD); - - /*** IO class object: settings and factory of Settings: Variables, - * Parameters, Transports, and Execution: Engines */ - adios2::IO bpIO = adios.DeclareIO("BPFile_N2N"); - - /** global array : name, { shape (total) }, { start (local) }, { count - * (local) }, all are constant dimensions */ - adios2::Variable &bpFloats = bpIO.DefineVariable( - "bpFloats", {size * Nx}, {rank * Nx}, {Nx}, adios2::ConstantDims); - - /** Engine derived class, spawned to start IO operations */ - auto bpWriter = bpIO.Open("myVector.bp", adios2::Mode::Write); - - if (!bpWriter) - { - throw std::ios_base::failure("ERROR: bpWriter not created at Open\n"); - } - - /** Write variable for buffering */ - bpWriter->Write(bpFloats, myFloats.data()); - - /** Create bp file, engine becomes unreachable after this*/ - bpWriter->Close(); - } - catch (std::invalid_argument &e) - { - std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; - std::cout << e.what() << "\n"; - } - catch (std::ios_base::failure &e) - { - std::cout << "IO System base failure exception, STOPPING PROGRAM from rank " << rank - << "\n"; - std::cout << e.what() << "\n"; - } - catch (std::exception &e) - { - std::cout << "Exception, STOPPING PROGRAM from rank " << rank << "\n"; - std::cout << e.what() << "\n"; - } - - MPI_Finalize(); - - return 0; -} diff --git a/examples/experimental/runtimeconfig/hello/helloBPWriterXML.py b/examples/experimental/runtimeconfig/hello/helloBPWriterXML.py deleted file mode 100644 index a4c2c4b6b0..0000000000 --- a/examples/experimental/runtimeconfig/hello/helloBPWriterXML.py +++ /dev/null @@ -1,36 +0,0 @@ -# -# Distributed under the OSI-approved Apache License, Version 2.0. See -# accompanying file Copyright.txt for details. -# -# helloBPWriterXML.py -# Created on: Feb 2, 2017 -# Author: William F Godoy godoywf@ornl.gov - -from mpi4py import MPI -import adios2 -import numpy - -# MPI -comm = MPI.COMM_WORLD -rank = comm.Get_rank() -size = comm.Get_size() - -# User data -myArray = numpy.array([0., 1., 2., 3., 4., 5., 6., 7., 8., 9.]) -Nx = myArray.size - -# ADIOS config file, MPI communicator -adios = adios2.ADIOS("helloBPWriter.xml", comm) - -# ADIOS IO, name must be the same as in helloBPWriter.xml for runtime settings -bpIO = adios.DeclareIO("BPFile_N2N") - -# Variable name, shape, start, count, ConstantDims = True -ioArray = bpIO.DefineVariable( - "bpArray", [size * Nx], [rank * Nx], [Nx], adios2.ConstantDims) - -# Engine name, open mode -bpFileWriter = bpIO.Open("npArray.bp", adios2.OpenModeWrite) -# Write variable, numpy object -bpFileWriter.Write(ioArray, myArray) -bpFileWriter.Close() diff --git a/examples/experimental/runtimeconfig/hello/helloBPWriterXML_nompi.cpp b/examples/experimental/runtimeconfig/hello/helloBPWriterXML_nompi.cpp deleted file mode 100644 index 07f5bedc19..0000000000 --- a/examples/experimental/runtimeconfig/hello/helloBPWriterXML_nompi.cpp +++ /dev/null @@ -1,93 +0,0 @@ -/* - * Distributed under the OSI-approved Apache License, Version 2.0. See - * accompanying file Copyright.txt for details. - * - * helloBPWriterXML_nompi.cpp: sequential non-mpi version of helloBPWriterXML - * - * Created on: Feb 16, 2017 - * Author: William F Godoy godoywf@ornl.gov - */ - -#include //std::ios_base::failure -#include //std::cout -#include //std::invalid_argument std::exception -#include - -#include - -#define str_helper(X) #X -#define str(X) str_helper(X) - -#ifndef DEFAULT_CONFIG -#define DEFAULT_CONFIG helloBPWriter.xml -#endif -#define DEFAULT_CONFIG_STR str(DEFAULT_CONFIG) - -int main(int argc, char *argv[]) -{ - std::string configFile; - if (argc == 1) - { - configFile = DEFAULT_CONFIG_STR; - } - else if (argc == 2) - { - configFile = argv[1]; - } - else - { - std::cerr << "Usage: " << argv[0] << " [/path/to/config.xml]" << std::endl; - return 1; - } - std::cout << "Using config file: " << configFile << std::endl; - - /** Application variable */ - std::vector myFloats = {0, 1, 2, 3, 4, 5, 6, 7, 8, 9}; - const std::size_t Nx = myFloats.size(); - - try - { - /** ADIOS class factory of IO class objects */ - adios2::ADIOS adios(configFile); - - /*** IO class object: settings and factory of Settings: Variables, - * Parameters, Transports, and Execution: Engines */ - adios2::IO bpIO = adios.DeclareIO("BPFile_N2N"); - - /** global array : name, { shape (total) }, { start (local) }, { count - * (local) }, all are constant dimensions */ - adios2::Variable &bpFloats = - bpIO.DefineVariable("bpFloats", {}, {}, {Nx}, adios2::ConstantDims); - - /** Engine derived class, spawned to start IO operations */ - auto bpWriter = bpIO.Open("myVector.bp", adios2::Mode::Write); - - if (!bpWriter) - { - throw std::ios_base::failure("ERROR: bpWriter not created at Open\n"); - } - - /** Write variable for buffering */ - bpWriter->Write(bpFloats, myFloats.data()); - - /** Create bp file, engine becomes unreachable after this*/ - bpWriter->Close(); - } - catch (std::invalid_argument &e) - { - std::cout << "Invalid argument exception, STOPPING PROGRAM\n"; - std::cout << e.what() << "\n"; - } - catch (std::ios_base::failure &e) - { - std::cout << "IO System base failure exception, STOPPING PROGRAM\n"; - std::cout << e.what() << "\n"; - } - catch (std::exception &e) - { - std::cout << "Exception, STOPPING PROGRAM from rank\n"; - std::cout << e.what() << "\n"; - } - - return 0; -} diff --git a/examples/experimental/runtimeconfig/hello/helloBPWriterXML_nompi.py b/examples/experimental/runtimeconfig/hello/helloBPWriterXML_nompi.py deleted file mode 100644 index 2ef26916ea..0000000000 --- a/examples/experimental/runtimeconfig/hello/helloBPWriterXML_nompi.py +++ /dev/null @@ -1,30 +0,0 @@ -# -# Distributed under the OSI-approved Apache License, Version 2.0. See -# accompanying file Copyright.txt for details. -# -# helloBPWriterXML_nompi.py serial non-MPI version of helloBPWriter.py -# Created on: Feb 2, 2017 -# Author: William F Godoy godoywf@ornl.gov - -import numpy -import adios2 - - -# User data -myArray = numpy.array([0., 1., 2., 3., 4., 5., 6., 7., 8., 9.]) -Nx = myArray.size - -# ADIOS config file -adios = adios2.ADIOS("helloBPWriter.xml") - -# ADIOS IO, name must be the same as in helloBPWriter.xml for runtime settings -bpIO = adios.DeclareIO("BPFile_N2N") - -# ADIOS local array: Variable name, shape, start, offset -ioArray = bpIO.DefineVariable( - "bpArray", [], [], [Nx], adios2.ConstantDims) - -# ADIOS Engine -bpFileWriter = bpIO.Open("npArray.bp", adios2.OpenModeWrite) -bpFileWriter.Write(ioArray, myArray) -bpFileWriter.Close() diff --git a/scripts/runconf/runconf_olcf.sh b/scripts/runconf/runconf_olcf.sh index 3d1ea83bc9..a9fc163f5d 100644 --- a/scripts/runconf/runconf_olcf.sh +++ b/scripts/runconf/runconf_olcf.sh @@ -66,7 +66,6 @@ if [ `hostname | cut -c 1-5` == "titan" ]; then -DADIOS2_USE_MPI=${USE_MPI} \ -DADIOS2_USE_Fortran=ON \ -DADIOS2_USE_Python=OFF \ - -DADIOS2_BUILD_EXAMPLES_EXPERIMENTAL=OFF \ -DCMAKE_BUILD_TYPE=RelWithDebInfo \ -DBUILD_TESTING=OFF \ ${EXTERNAL_OPTS} \ @@ -116,7 +115,6 @@ elif [ `hostname -f | cut -c 1-9` == "summitdev" ]; then -DADIOS2_USE_MPI=${USE_MPI} \ -DADIOS2_USE_Fortran=ON \ -DADIOS2_USE_Python=OFF \ - -DADIOS2_BUILD_EXAMPLES_EXPERIMENTAL=OFF \ -DCMAKE_BUILD_TYPE=Debug \ -DBUILD_TESTING=ON \ -DADIOS2_USE_DataMan=OFF \ @@ -154,7 +152,6 @@ elif [ `hostname -f | cut -c 1-4` == "rhea" ]; then -DADIOS2_USE_Fortran=ON \ -DADIOS2_USE_Python=OFF \ -DADIOS2_USE_SST=OFF \ - -DADIOS2_BUILD_EXAMPLES_EXPERIMENTAL=OFF \ -DCMAKE_BUILD_TYPE=Debug \ -DBUILD_TESTING=ON \ -DADIOS2_USE_DataMan=OFF \ From a4ae05730ef9c5a58b85dafeb18b1fc6352094c3 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Tue, 12 Sep 2023 22:18:40 -0400 Subject: [PATCH 138/183] Remove BP5 BetweenStepPairs variable that hides Engine.h counterpart --- source/adios2/engine/bp5/BP5Writer.h | 2 -- 1 file changed, 2 deletions(-) diff --git a/source/adios2/engine/bp5/BP5Writer.h b/source/adios2/engine/bp5/BP5Writer.h index 72d0602217..eaddf93b9d 100644 --- a/source/adios2/engine/bp5/BP5Writer.h +++ b/source/adios2/engine/bp5/BP5Writer.h @@ -97,8 +97,6 @@ class BP5Writer : public BP5Engine, public core::Engine std::vector m_DrainMetadataIndexFileNames; std::vector m_ActiveFlagFileNames; - bool m_BetweenStepPairs = false; - void Init() final; /** Parses parameters from IO SetParameters */ From 7b0c8764e3e3453eb1f6413fc47ae76f601ed901 Mon Sep 17 00:00:00 2001 From: anagainaru Date: Wed, 13 Sep 2023 13:54:32 -0400 Subject: [PATCH 139/183] Fix the ADIOS_USE_{_} variable names to use ADIOS2 Co-authored-by: Vicente Adolfo Bolea Sanchez --- cmake/ADIOSFunctions.cmake | 2 +- cmake/DetectOptions.cmake | 6 +++--- examples/hello/README.md | 4 ++-- 3 files changed, 6 insertions(+), 6 deletions(-) diff --git a/cmake/ADIOSFunctions.cmake b/cmake/ADIOSFunctions.cmake index 7d26bcc355..71d6ab994c 100644 --- a/cmake/ADIOSFunctions.cmake +++ b/cmake/ADIOSFunctions.cmake @@ -97,7 +97,7 @@ function(GenerateADIOSHeaderConfig) foreach(OPT IN LISTS ARGN) string(TOUPPER ${OPT} OPT_UPPER) string(APPEND ADIOS2_CONFIG_DEFINES " -/* CMake Option: ADIOS_USE_${OPT}=OFF */ +/* CMake Option: ADIOS2_USE_${OPT}=OFF */ #cmakedefine ADIOS2_HAVE_${OPT_UPPER} ") if(ADIOS2_HAVE_${OPT}) diff --git a/cmake/DetectOptions.cmake b/cmake/DetectOptions.cmake index 4044cb822f..c8f277567c 100644 --- a/cmake/DetectOptions.cmake +++ b/cmake/DetectOptions.cmake @@ -193,8 +193,8 @@ endif() set(mpi_find_components C) -if(ADIOS_USE_Kokkos AND ADIOS_USE_CUDA) - message(FATAL_ERROR "ADIOS2_USE_Kokkos is incompatible with ADIOS_USE_CUDA") +if(ADIOS2_USE_Kokkos AND ADIOS2_USE_CUDA) + message(FATAL_ERROR "ADIOS2_USE_Kokkos is incompatible with ADIOS2_USE_CUDA") endif() # Kokkos @@ -239,7 +239,7 @@ if(ADIOS2_USE_CUDA) endif() endif() -if(ADIOS_HAVE_Kokkos AND ADIOS_HAVE_CUDA) +if(ADIOS2_HAVE_Kokkos AND ADIOS2_HAVE_CUDA) message(FATAL_ERROR "The Kokkos and CUDA backends cannot be active concurrently") endif() diff --git a/examples/hello/README.md b/examples/hello/README.md index 01b109ccc7..e02c03c051 100644 --- a/examples/hello/README.md +++ b/examples/hello/README.md @@ -8,11 +8,11 @@ Provides tests and illustrates how to use very basic functionality in adios2 1. bpTimeWriter * Write BP format files for two Variables (one is timestep) using time aggregation -1. datamanReader (to be deprecated, ADIOS_USE_DataMan=ON) +1. datamanReader (to be deprecated, ADIOS2_USE_DataMan=ON) * Read real-time WAN streams using dataman 1. datamanWriter * Write real-time WAN streams using dataman -1. hdf5Writer (-DADIOS_USE_HDF5=ON) +1. hdf5Writer (-DADIOS2_USE_HDF5=ON) * Write HDF5 files using interoperability through the adios2 interface From 17d662a62997dc6d7a21f341d94b3051a524e55a Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Fri, 15 Sep 2023 14:05:42 -0400 Subject: [PATCH 140/183] Pass Array Order of reader to remote server for proper Get() operation --- source/adios2/engine/bp5/BP5Reader.cpp | 6 ++++-- source/adios2/toolkit/remote/Remote.cpp | 3 ++- source/adios2/toolkit/remote/Remote.h | 2 +- source/adios2/toolkit/remote/remote_common.cpp | 12 +++++++----- source/adios2/toolkit/remote/remote_common.h | 1 + source/adios2/toolkit/remote/remote_server.cpp | 9 ++++++--- 6 files changed, 21 insertions(+), 12 deletions(-) diff --git a/source/adios2/engine/bp5/BP5Reader.cpp b/source/adios2/engine/bp5/BP5Reader.cpp index fd2f4c33db..79c32fd0c2 100644 --- a/source/adios2/engine/bp5/BP5Reader.cpp +++ b/source/adios2/engine/bp5/BP5Reader.cpp @@ -467,13 +467,15 @@ void BP5Reader::Init() // This isn't how we'll trigger remote ops in the end, but a temporary // solution + bool RowMajorOrdering = (m_IO.m_ArrayOrder == ArrayOrdering::RowMajor); if (!m_Parameters.RemoteDataPath.empty()) { - m_Remote.Open("localhost", 26200, m_Parameters.RemoteDataPath, m_OpenMode); + m_Remote.Open("localhost", 26200, m_Parameters.RemoteDataPath, m_OpenMode, + RowMajorOrdering); } else if (getenv("DoRemote")) { - m_Remote.Open("localhost", 26200, m_Name, m_OpenMode); + m_Remote.Open("localhost", 26200, m_Name, m_OpenMode, RowMajorOrdering); } } diff --git a/source/adios2/toolkit/remote/Remote.cpp b/source/adios2/toolkit/remote/Remote.cpp index 9f8937e1aa..bc4823b355 100644 --- a/source/adios2/toolkit/remote/Remote.cpp +++ b/source/adios2/toolkit/remote/Remote.cpp @@ -72,7 +72,7 @@ void Remote::InitCMData() } void Remote::Open(const std::string hostname, const int32_t port, const std::string filename, - const Mode mode) + const Mode mode, bool RowMajorOrdering) { RemoteCommon::_OpenFileMsg open_msg; @@ -102,6 +102,7 @@ void Remote::Open(const std::string hostname, const int32_t port, const std::str break; } open_msg.OpenResponseCondition = CMCondition_get(ev_state.cm, m_conn); + open_msg.RowMajorOrder = RowMajorOrdering; CMCondition_set_client_data(ev_state.cm, open_msg.OpenResponseCondition, (void *)this); CMwrite(m_conn, ev_state.OpenFileFormat, &open_msg); CMCondition_wait(ev_state.cm, open_msg.OpenResponseCondition); diff --git a/source/adios2/toolkit/remote/Remote.h b/source/adios2/toolkit/remote/Remote.h index 0858f0654d..f6b16bd304 100644 --- a/source/adios2/toolkit/remote/Remote.h +++ b/source/adios2/toolkit/remote/Remote.h @@ -38,7 +38,7 @@ class Remote explicit operator bool() const { return m_Active; } void Open(const std::string hostname, const int32_t port, const std::string filename, - const Mode mode); + const Mode mode, bool RowMajorOrdering); void OpenSimpleFile(const std::string hostname, const int32_t port, const std::string filename); diff --git a/source/adios2/toolkit/remote/remote_common.cpp b/source/adios2/toolkit/remote/remote_common.cpp index 9bb15a55c7..8e69f4df69 100644 --- a/source/adios2/toolkit/remote/remote_common.cpp +++ b/source/adios2/toolkit/remote/remote_common.cpp @@ -6,11 +6,13 @@ namespace adios2 namespace RemoteCommon { -FMField OpenFileList[] = {{"OpenResponseCondition", "integer", sizeof(long), - FMOffset(OpenFileMsg, OpenResponseCondition)}, - {"FileName", "string", sizeof(char *), FMOffset(OpenFileMsg, FileName)}, - {"Mode", "integer", sizeof(RemoteFileMode), FMOffset(OpenFileMsg, Mode)}, - {NULL, NULL, 0, 0}}; +FMField OpenFileList[] = { + {"OpenResponseCondition", "integer", sizeof(long), + FMOffset(OpenFileMsg, OpenResponseCondition)}, + {"FileName", "string", sizeof(char *), FMOffset(OpenFileMsg, FileName)}, + {"Mode", "integer", sizeof(RemoteFileMode), FMOffset(OpenFileMsg, Mode)}, + {"RowMajorOrder", "integer", sizeof(RemoteFileMode), FMOffset(OpenFileMsg, RowMajorOrder)}, + {NULL, NULL, 0, 0}}; FMStructDescRec OpenFileStructs[] = {{"OpenFile", OpenFileList, sizeof(struct _OpenFileMsg), NULL}, {NULL, NULL, 0, NULL}}; diff --git a/source/adios2/toolkit/remote/remote_common.h b/source/adios2/toolkit/remote/remote_common.h index 81d303f490..48102e7b2d 100644 --- a/source/adios2/toolkit/remote/remote_common.h +++ b/source/adios2/toolkit/remote/remote_common.h @@ -18,6 +18,7 @@ typedef struct _OpenFileMsg int OpenResponseCondition; char *FileName; RemoteFileMode Mode; + int RowMajorOrder; } *OpenFileMsg; typedef struct _OpenResponseMsg diff --git a/source/adios2/toolkit/remote/remote_server.cpp b/source/adios2/toolkit/remote/remote_server.cpp index 9d640017f4..27a070a43a 100644 --- a/source/adios2/toolkit/remote/remote_server.cpp +++ b/source/adios2/toolkit/remote/remote_server.cpp @@ -74,12 +74,14 @@ class AnonADIOSFile size_t m_BytesSent = 0; size_t m_OperationCount = 0; RemoteFileMode m_mode = RemoteCommon::RemoteFileMode::RemoteOpen; - AnonADIOSFile(std::string FileName, RemoteCommon::RemoteFileMode mode) + AnonADIOSFile(std::string FileName, RemoteCommon::RemoteFileMode mode, bool RowMajorArrays) { Mode adios_read_mode = adios2::Mode::Read; m_FileName = FileName; m_IOname = lf_random_string(); - m_io = &adios.DeclareIO(m_IOname); + ArrayOrdering ArrayOrder = + RowMajorArrays ? ArrayOrdering::RowMajor : ArrayOrdering::ColumnMajor; + m_io = &adios.DeclareIO(m_IOname, ArrayOrder); m_mode = mode; if (m_mode == RemoteOpenRandomAccess) adios_read_mode = adios2::Mode::ReadRandomAccess; @@ -163,7 +165,8 @@ static void OpenHandler(CManager cm, CMConnection conn, void *vevent, void *clie struct Remote_evpath_state *ev_state = static_cast(client_data); _OpenResponseMsg open_response_msg; std::cout << "Got an open request for file " << open_msg->FileName << std::endl; - AnonADIOSFile *f = new AnonADIOSFile(open_msg->FileName, open_msg->Mode); + AnonADIOSFile *f = + new AnonADIOSFile(open_msg->FileName, open_msg->Mode, open_msg->RowMajorOrder); memset(&open_response_msg, 0, sizeof(open_response_msg)); open_response_msg.FileHandle = f->m_ID; open_response_msg.OpenResponseCondition = open_msg->OpenResponseCondition; From 810f7944e6529bc7f3cecfb396dca70049b47a3c Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Fri, 15 Sep 2023 14:35:53 -0400 Subject: [PATCH 141/183] fix dummy Win build --- source/adios2/toolkit/remote/Remote.cpp | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/source/adios2/toolkit/remote/Remote.cpp b/source/adios2/toolkit/remote/Remote.cpp index bc4823b355..13f46dbdc7 100644 --- a/source/adios2/toolkit/remote/Remote.cpp +++ b/source/adios2/toolkit/remote/Remote.cpp @@ -172,7 +172,7 @@ bool Remote::WaitForGet(GetHandle handle) { return CMCondition_wait(ev_state.cm, #else void Remote::Open(const std::string hostname, const int32_t port, const std::string filename, - const Mode mode){}; + const Mode mode, bool RowMajorOrdering){}; void Remote::OpenSimpleFile(const std::string hostname, const int32_t port, const std::string filename){}; From 7c44ccfa6d4e0f794536053fc6ca21702e69a511 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Mon, 18 Sep 2023 19:55:18 -0400 Subject: [PATCH 142/183] Fix abs/rel step in BP5 DoCount --- .../toolkit/format/bp5/BP5Deserializer.cpp | 20 ++++++++++++------ .../adios2/toolkit/remote/remote_common.cpp | 2 +- .../adios2/toolkit/remote/remote_server.cpp | 21 +++++++++++++++---- 3 files changed, 32 insertions(+), 11 deletions(-) diff --git a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp index c78fa38ae1..cf9fbefc14 100644 --- a/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp +++ b/source/adios2/toolkit/format/bp5/BP5Deserializer.cpp @@ -1948,15 +1948,21 @@ void *BP5Deserializer::GetMetadataBase(BP5VarRec *VarRec, size_t Step, size_t Wr return writer_meta_base; } -MinVarInfo *BP5Deserializer::MinBlocksInfo(const VariableBase &Var, size_t Step) +MinVarInfo *BP5Deserializer::MinBlocksInfo(const VariableBase &Var, size_t RelStep) { BP5VarRec *VarRec = LookupVarByKey((void *)&Var); MinVarInfo *MV = new MinVarInfo((int)VarRec->DimCount, VarRec->GlobalDims); - const size_t writerCohortSize = WriterCohortSize(Step); + size_t AbsStep = RelStep; + + if (m_RandomAccessMode) + { + AbsStep = VarRec->AbsStepFromRel[RelStep]; + } + const size_t writerCohortSize = WriterCohortSize(AbsStep); size_t Id = 0; - MV->Step = Step; + MV->Step = RelStep; MV->Dims = (int)VarRec->DimCount; MV->Shape = NULL; MV->IsReverseDims = ((MV->Dims > 1) && (m_WriterIsRowMajor != m_ReaderIsRowMajor)); @@ -1981,7 +1987,7 @@ MinVarInfo *BP5Deserializer::MinBlocksInfo(const VariableBase &Var, size_t Step) for (size_t WriterRank = 0; WriterRank < writerCohortSize; WriterRank++) { MetaArrayRec *writer_meta_base = - (MetaArrayRec *)GetMetadataBase(VarRec, Step, WriterRank); + (MetaArrayRec *)GetMetadataBase(VarRec, AbsStep, WriterRank); if (writer_meta_base) { MinBlockInfo Blk; @@ -2007,7 +2013,8 @@ MinVarInfo *BP5Deserializer::MinBlocksInfo(const VariableBase &Var, size_t Step) } for (size_t WriterRank = 0; WriterRank < writerCohortSize; WriterRank++) { - MetaArrayRec *writer_meta_base = (MetaArrayRec *)GetMetadataBase(VarRec, Step, WriterRank); + MetaArrayRec *writer_meta_base = + (MetaArrayRec *)GetMetadataBase(VarRec, AbsStep, WriterRank); if (writer_meta_base) { if (MV->Shape == NULL) @@ -2024,7 +2031,8 @@ MinVarInfo *BP5Deserializer::MinBlocksInfo(const VariableBase &Var, size_t Step) Id = 0; for (size_t WriterRank = 0; WriterRank < writerCohortSize; WriterRank++) { - MetaArrayRec *writer_meta_base = (MetaArrayRec *)GetMetadataBase(VarRec, Step, WriterRank); + MetaArrayRec *writer_meta_base = + (MetaArrayRec *)GetMetadataBase(VarRec, AbsStep, WriterRank); if (!writer_meta_base) continue; diff --git a/source/adios2/toolkit/remote/remote_common.cpp b/source/adios2/toolkit/remote/remote_common.cpp index 8e69f4df69..20870815d5 100644 --- a/source/adios2/toolkit/remote/remote_common.cpp +++ b/source/adios2/toolkit/remote/remote_common.cpp @@ -11,7 +11,7 @@ FMField OpenFileList[] = { FMOffset(OpenFileMsg, OpenResponseCondition)}, {"FileName", "string", sizeof(char *), FMOffset(OpenFileMsg, FileName)}, {"Mode", "integer", sizeof(RemoteFileMode), FMOffset(OpenFileMsg, Mode)}, - {"RowMajorOrder", "integer", sizeof(RemoteFileMode), FMOffset(OpenFileMsg, RowMajorOrder)}, + {"RowMajorOrder", "integer", sizeof(int), FMOffset(OpenFileMsg, RowMajorOrder)}, {NULL, NULL, 0, 0}}; FMStructDescRec OpenFileStructs[] = {{"OpenFile", OpenFileList, sizeof(struct _OpenFileMsg), NULL}, diff --git a/source/adios2/toolkit/remote/remote_server.cpp b/source/adios2/toolkit/remote/remote_server.cpp index 27a070a43a..523ab70c55 100644 --- a/source/adios2/toolkit/remote/remote_server.cpp +++ b/source/adios2/toolkit/remote/remote_server.cpp @@ -164,7 +164,11 @@ static void OpenHandler(CManager cm, CMConnection conn, void *vevent, void *clie OpenFileMsg open_msg = static_cast(vevent); struct Remote_evpath_state *ev_state = static_cast(client_data); _OpenResponseMsg open_response_msg; - std::cout << "Got an open request for file " << open_msg->FileName << std::endl; + std::string strMode = "Streaming"; + if (open_msg->Mode == RemoteOpenRandomAccess) + strMode = "RandomAccess"; + std::cout << "Got an open request (mode " << strMode << ") for file " << open_msg->FileName + << std::endl; AnonADIOSFile *f = new AnonADIOSFile(open_msg->FileName, open_msg->Mode, open_msg->RowMajorOrder); memset(&open_response_msg, 0, sizeof(open_response_msg)); @@ -231,9 +235,11 @@ static void GetRequestHandler(CManager cm, CMConnection conn, void *vevent, void } } - if (TypeOfVar == adios2::DataType::None) + try { - } + if (TypeOfVar == adios2::DataType::None) + { + } #define GET(T) \ else if (TypeOfVar == helper::GetDataType()) \ { \ @@ -259,8 +265,15 @@ static void GetRequestHandler(CManager cm, CMConnection conn, void *vevent, void f->m_OperationCount++; \ CMwrite(conn, ev_state->ReadResponseFormat, &Response); \ } - ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(GET) + ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(GET) #undef GET + } + catch (const std::exception &exc) + { + if (verbose) + std::cout << "Returning exception " << exc.what() << " for Get<" << TypeOfVar << ">(" + << VarName << ")" << std::endl; + } } static void ReadRequestHandler(CManager cm, CMConnection conn, void *vevent, void *client_data, From 44a19784e39048c049d9fdc8854ab14dbc904195 Mon Sep 17 00:00:00 2001 From: ffs Upstream Date: Tue, 19 Sep 2023 14:54:33 -0400 Subject: [PATCH 143/183] ffs 2023-09-19 (67e411c0) Code extracted from: https://github.com/GTkorvo/ffs.git at commit 67e411c0d7ee176a550feb3a9fb9f4e48a8d15bd (master). Upstream Shortlog ----------------- --- cod/cod.l | 2 +- cod/cod.y | 4 +- cod/pregen_source/Linux/cod.l | 82 +++-------------------------- cod/pregen_source/Linux/cod.tab.c | 6 +-- cod/pregen_source/Linux/cod.tab.h | 6 +-- cod/pregen_source/Linux/cod.y | 4 +- cod/pregen_source/Linux/lex.yy.c | 49 ++++++++--------- cod/pregen_source/Windows/cod.l | 2 +- cod/pregen_source/Windows/cod.tab.c | 8 +-- cod/pregen_source/Windows/cod.tab.h | 4 +- cod/pregen_source/Windows/cod.y | 4 +- cod/pregen_source/Windows/lex.yy.c | 2 +- 12 files changed, 52 insertions(+), 121 deletions(-) diff --git a/cod/cod.l b/cod/cod.l index 92d92c81af..6b816a740f 100644 --- a/cod/cod.l +++ b/cod/cod.l @@ -183,7 +183,7 @@ return {RETURN(RETURN_TOKEN);} [A-Za-z_][A-Za-z0-9_]* { yylval.info.string = create_string_from_yytext(); if (is_defined_type(yylval.info.string)) { - RETURN(type_id); + RETURN(type_identifier); } else if (is_enumeration_constant(yylval.info.string)) { RETURN(enumeration_constant); } else { diff --git a/cod/cod.y b/cod/cod.y index 5d21652bd8..a4d0d17515 100644 --- a/cod/cod.y +++ b/cod/cod.y @@ -286,7 +286,7 @@ cod_dup_list(sm_list list) %token string_constant %token floating_constant %token identifier_ref -%token type_id +%token type_identifier %token enumeration_constant %type struct_or_union; @@ -1039,7 +1039,7 @@ type_specifier: $$->node.type_specifier.lx_srcpos = $1.lx_srcpos; $$->node.type_specifier.token = STRING; } - | type_id { + | type_identifier { $$ = cod_new_identifier(); $$->node.identifier.lx_srcpos = $1.lx_srcpos; $$->node.identifier.id = $1.string; diff --git a/cod/pregen_source/Linux/cod.l b/cod/pregen_source/Linux/cod.l index 1aeba7fb0f..6b816a740f 100644 --- a/cod/pregen_source/Linux/cod.l +++ b/cod/pregen_source/Linux/cod.l @@ -71,8 +71,7 @@ extern int my_yy_input(); #endif static int -is_defined_type(id) -char *id; +is_defined_type(char *id) { int i = 0; while(types && types[i]) { @@ -83,8 +82,7 @@ char *id; } static int -is_enumeration_constant(id) -char *id; +is_enumeration_constant(char *id) { int i = 0; while(enums && enums[i]) { @@ -185,7 +183,7 @@ return {RETURN(RETURN_TOKEN);} [A-Za-z_][A-Za-z0-9_]* { yylval.info.string = create_string_from_yytext(); if (is_defined_type(yylval.info.string)) { - RETURN(type_id); + RETURN(type_identifier); } else if (is_enumeration_constant(yylval.info.string)) { RETURN(enumeration_constant); } else { @@ -329,7 +327,7 @@ static char *create_string_from_yytext() static void check_strbuf() { - int cur_len = string_buf_ptr - string_buffer; + intptr_t cur_len = string_buf_ptr - string_buffer; if ((cur_len + 1) == buffer_len) { buffer_len += 20; string_buffer = realloc(string_buffer, buffer_len + 1); @@ -361,87 +359,21 @@ yywrap YY_PROTO(( void )) } -#ifndef input /* flex, not lex */ void yy_delete_buffer YY_PROTO((YY_BUFFER_STATE b)); -#ifdef WINNT -/* old Windows code for MKS Toolkit version of flex */ - -static void -terminate_string_parse() -{ - yyrestart(NULL); -} - -#ifdef YY_USE_PROTOS -static void *yy_flex_alloc( yy_size_t size ) -#else -static void *yy_flex_alloc( size ) -yy_size_t size; -#endif - { - return (void *) malloc( size ); - } - -static char* current_input_string; - -int my_yy_input(buf,result,max_size) { - - if (current_input_string == NULL) - { - - result = 0; - } - else - if (max_size < strlen(current_input_string)) - { - memcpy((void*)buf, current_input_string, max_size); - current_input_string += max_size; - result = max_size; - } else { - int n = strlen(current_input_string); - memcpy((void*)buf, current_input_string, n+1); - current_input_string = NULL; - result = n; - } - -/* printf("my_yy_input buf[%s],result[%d]\n",buf,result);*/ - return result; -} - -static void -setup_for_string_parse(string, defined_types, enum_constants) -const char *string; -char **defined_types; -char **enum_constants; -{ - type_count = defined_type_count; - types = defined_types; - enums = enum_constants; - - current_input_string = string; - lex_offset = 1; - line_count = 1; -} -#else static YY_BUFFER_STATE bb = NULL; static void -reset_types_table(defined_types, enumerated_constants) -char **defined_types; -char **enumerated_constants; +reset_types_table(char **defined_types, char **enumerated_constants) { types = defined_types; enums = enumerated_constants; } static void -setup_for_string_parse(string, defined_types, enum_constants) -const char *string; -char **defined_types; -char **enum_constants; +setup_for_string_parse(const char *string, char **defined_types, char **enum_constants) { types = defined_types; enums = enum_constants; @@ -462,5 +394,3 @@ terminate_string_parse() } } -#endif -#endif diff --git a/cod/pregen_source/Linux/cod.tab.c b/cod/pregen_source/Linux/cod.tab.c index 3e09ac5b37..46bcb484ef 100644 --- a/cod/pregen_source/Linux/cod.tab.c +++ b/cod/pregen_source/Linux/cod.tab.c @@ -146,7 +146,7 @@ string_constant = 335, floating_constant = 336, identifier_ref = 337, - type_id = 338, + type_identifier = 338, enumeration_constant = 339 }; #endif @@ -231,7 +231,7 @@ #define string_constant 335 #define floating_constant 336 #define identifier_ref 337 -#define type_id 338 +#define type_identifier 338 #define enumeration_constant 339 @@ -891,7 +891,7 @@ static const char *const yytname[] = "STATIC", "EXTERN_TOKEN", "STRUCT", "ENUM", "UNION", "CONST", "SIZEOF", "TYPEDEF", "RETURN_TOKEN", "CONTINUE", "BREAK", "GOTO", "PRINT", "COMMA", "DOTDOTDOT", "integer_constant", "character_constant", "string_constant", - "floating_constant", "identifier_ref", "type_id", "enumeration_constant", + "floating_constant", "identifier_ref", "type_identifier", "enumeration_constant", "$accept", "start", "primary_expression", "postfix_expression", "argument_expression_list", "unary_expression", "unary_operator", "cast_expression", "multiplicative_expression", "additive_expression", diff --git a/cod/pregen_source/Linux/cod.tab.h b/cod/pregen_source/Linux/cod.tab.h index b431ca0b3e..30d3bb0194 100644 --- a/cod/pregen_source/Linux/cod.tab.h +++ b/cod/pregen_source/Linux/cod.tab.h @@ -119,7 +119,7 @@ string_constant = 335, floating_constant = 336, identifier_ref = 337, - type_id = 338, + type_identifier = 338, enumeration_constant = 339 }; #endif @@ -204,7 +204,7 @@ #define string_constant 335 #define floating_constant 336 #define identifier_ref 337 -#define type_id 338 +#define type_identifier 338 #define enumeration_constant 339 @@ -212,7 +212,7 @@ #if ! defined YYSTYPE && ! defined YYSTYPE_IS_DECLARED typedef union YYSTYPE -#line 187 "cod/cod.y" +#line 201 "cod/cod.y" { lx_info info; sm_ref reference; diff --git a/cod/pregen_source/Linux/cod.y b/cod/pregen_source/Linux/cod.y index 5d21652bd8..a4d0d17515 100644 --- a/cod/pregen_source/Linux/cod.y +++ b/cod/pregen_source/Linux/cod.y @@ -286,7 +286,7 @@ cod_dup_list(sm_list list) %token string_constant %token floating_constant %token identifier_ref -%token type_id +%token type_identifier %token enumeration_constant %type struct_or_union; @@ -1039,7 +1039,7 @@ type_specifier: $$->node.type_specifier.lx_srcpos = $1.lx_srcpos; $$->node.type_specifier.token = STRING; } - | type_id { + | type_identifier { $$ = cod_new_identifier(); $$->node.identifier.lx_srcpos = $1.lx_srcpos; $$->node.identifier.id = $1.string; diff --git a/cod/pregen_source/Linux/lex.yy.c b/cod/pregen_source/Linux/lex.yy.c index 87e6fbf9fb..2d4b639dcb 100644 --- a/cod/pregen_source/Linux/lex.yy.c +++ b/cod/pregen_source/Linux/lex.yy.c @@ -1,6 +1,6 @@ -#line 1 "/ccs/home/eisen/ffs/build/lex.yy.c" +#line 1 "/Users/eisen/prog/ffs/build/lex.yy.c" -#line 3 "/ccs/home/eisen/ffs/build/lex.yy.c" +#line 3 "/Users/eisen/prog/ffs/build/lex.yy.c" #define YY_INT_ALIGNED short int @@ -47,6 +47,7 @@ typedef int16_t flex_int16_t; typedef uint16_t flex_uint16_t; typedef int32_t flex_int32_t; typedef uint32_t flex_uint32_t; +typedef uint64_t flex_uint64_t; #else typedef signed char flex_int8_t; typedef short int flex_int16_t; @@ -155,7 +156,7 @@ typedef struct yy_buffer_state *YY_BUFFER_STATE; typedef size_t yy_size_t; #endif -extern int yyleng; +extern yy_size_t yyleng; extern FILE *yyin, *yyout; @@ -198,7 +199,7 @@ struct yy_buffer_state /* Number of characters read into yy_ch_buf, not including EOB * characters. */ - int yy_n_chars; + yy_size_t yy_n_chars; /* Whether we "own" the buffer - i.e., we know we created it, * and can realloc() it to grow it, and should free() it to @@ -267,8 +268,8 @@ static YY_BUFFER_STATE * yy_buffer_stack = NULL; /**< Stack as an array. */ /* yy_hold_char holds the character lost when yytext is formed. */ static char yy_hold_char; -static int yy_n_chars; /* number of characters read into yy_ch_buf */ -int yyleng; +static yy_size_t yy_n_chars; /* number of characters read into yy_ch_buf */ +yy_size_t yyleng; /* Points to current character in buffer. */ static char *yy_c_buf_p = NULL; @@ -295,7 +296,7 @@ static void yy_init_buffer ( YY_BUFFER_STATE b, FILE *file ); YY_BUFFER_STATE yy_scan_buffer ( char *base, yy_size_t size ); YY_BUFFER_STATE yy_scan_string ( const char *yy_str ); -YY_BUFFER_STATE yy_scan_bytes ( const char *bytes, int len ); +YY_BUFFER_STATE yy_scan_bytes ( const char *bytes, yy_size_t len ); void *yyalloc ( yy_size_t ); void *yyrealloc ( void *, yy_size_t ); @@ -348,7 +349,7 @@ static void yynoreturn yy_fatal_error ( const char* msg ); */ #define YY_DO_BEFORE_ACTION \ (yytext_ptr) = yy_bp; \ - yyleng = (int) (yy_cp - yy_bp); \ + yyleng = (yy_size_t) (yy_cp - yy_bp); \ (yy_hold_char) = *yy_cp; \ *yy_cp = '\0'; \ (yy_c_buf_p) = yy_cp; @@ -767,9 +768,9 @@ static void check_strbuf(); static int buffer_len; static char *string_buffer; static char *string_buf_ptr; -#line 770 "/ccs/home/eisen/ffs/build/lex.yy.c" +#line 771 "/Users/eisen/prog/ffs/build/lex.yy.c" -#line 772 "/ccs/home/eisen/ffs/build/lex.yy.c" +#line 773 "/Users/eisen/prog/ffs/build/lex.yy.c" #define INITIAL 0 #define string_cond 1 @@ -810,7 +811,7 @@ FILE *yyget_out ( void ); void yyset_out ( FILE * _out_str ); - int yyget_leng ( void ); + yy_size_t yyget_leng ( void ); char *yyget_text ( void ); @@ -879,7 +880,7 @@ static int input ( void ); if ( YY_CURRENT_BUFFER_LVALUE->yy_is_interactive ) \ { \ int c = '*'; \ - int n; \ + yy_size_t n; \ for ( n = 0; n < max_size && \ (c = getc( yyin )) != EOF && c != '\n'; ++n ) \ buf[n] = (char) c; \ @@ -992,7 +993,7 @@ YY_DECL -#line 995 "/ccs/home/eisen/ffs/build/lex.yy.c" +#line 996 "/Users/eisen/prog/ffs/build/lex.yy.c" while ( /*CONSTCOND*/1 ) /* loops until end-of-file is reached */ { @@ -1430,7 +1431,7 @@ YY_RULE_SETUP { yylval.info.string = create_string_from_yytext(); if (is_defined_type(yylval.info.string)) { - RETURN(type_id); + RETURN(type_identifier); } else if (is_enumeration_constant(yylval.info.string)) { RETURN(enumeration_constant); } else { @@ -1679,7 +1680,7 @@ YY_RULE_SETUP #line 320 "cod/cod.l" ECHO; YY_BREAK -#line 1682 "/ccs/home/eisen/ffs/build/lex.yy.c" +#line 1683 "/Users/eisen/prog/ffs/build/lex.yy.c" case YY_STATE_EOF(INITIAL): case YY_STATE_EOF(string_cond): case YY_STATE_EOF(comment): @@ -1868,7 +1869,7 @@ static int yy_get_next_buffer (void) else { - int num_to_read = + yy_size_t num_to_read = YY_CURRENT_BUFFER_LVALUE->yy_buf_size - number_to_move - 1; while ( num_to_read <= 0 ) @@ -1882,7 +1883,7 @@ static int yy_get_next_buffer (void) if ( b->yy_is_our_buffer ) { - int new_size = b->yy_buf_size * 2; + yy_size_t new_size = b->yy_buf_size * 2; if ( new_size <= 0 ) b->yy_buf_size += b->yy_buf_size / 8; @@ -1940,7 +1941,7 @@ static int yy_get_next_buffer (void) if (((yy_n_chars) + number_to_move) > YY_CURRENT_BUFFER_LVALUE->yy_buf_size) { /* Extend the array by 50%, plus the number we really need. */ - int new_size = (yy_n_chars) + number_to_move + ((yy_n_chars) >> 1); + yy_size_t new_size = (yy_n_chars) + number_to_move + ((yy_n_chars) >> 1); YY_CURRENT_BUFFER_LVALUE->yy_ch_buf = (char *) yyrealloc( (void *) YY_CURRENT_BUFFER_LVALUE->yy_ch_buf, (yy_size_t) new_size ); if ( ! YY_CURRENT_BUFFER_LVALUE->yy_ch_buf ) @@ -2029,7 +2030,7 @@ static int yy_get_next_buffer (void) if ( yy_cp < YY_CURRENT_BUFFER_LVALUE->yy_ch_buf + 2 ) { /* need to shift things up to make room */ /* +2 for EOB chars. */ - int number_to_move = (yy_n_chars) + 2; + yy_size_t number_to_move = (yy_n_chars) + 2; char *dest = &YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[ YY_CURRENT_BUFFER_LVALUE->yy_buf_size + 2]; char *source = @@ -2080,7 +2081,7 @@ static int yy_get_next_buffer (void) else { /* need more input */ - int offset = (int) ((yy_c_buf_p) - (yytext_ptr)); + yy_size_t offset = (yy_c_buf_p) - (yytext_ptr); ++(yy_c_buf_p); switch ( yy_get_next_buffer( ) ) @@ -2449,12 +2450,12 @@ YY_BUFFER_STATE yy_scan_string (const char * yystr ) * * @return the newly allocated buffer state object. */ -YY_BUFFER_STATE yy_scan_bytes (const char * yybytes, int _yybytes_len ) +YY_BUFFER_STATE yy_scan_bytes (const char * yybytes, yy_size_t _yybytes_len ) { YY_BUFFER_STATE b; char *buf; yy_size_t n; - int i; + yy_size_t i; /* Get memory for full buffer, including space for trailing EOB's. */ n = (yy_size_t) (_yybytes_len + 2); @@ -2496,7 +2497,7 @@ static void yynoreturn yy_fatal_error (const char* msg ) do \ { \ /* Undo effects of setting up yytext. */ \ - int yyless_macro_arg = (n); \ + yy_size_t yyless_macro_arg = (n); \ YY_LESS_LINENO(yyless_macro_arg);\ yytext[yyleng] = (yy_hold_char); \ (yy_c_buf_p) = yytext + yyless_macro_arg; \ @@ -2536,7 +2537,7 @@ FILE *yyget_out (void) /** Get the length of the current token. * */ -int yyget_leng (void) +yy_size_t yyget_leng (void) { return yyleng; } diff --git a/cod/pregen_source/Windows/cod.l b/cod/pregen_source/Windows/cod.l index fd5517b57a..724916d39c 100644 --- a/cod/pregen_source/Windows/cod.l +++ b/cod/pregen_source/Windows/cod.l @@ -183,7 +183,7 @@ return {RETURN(RETURN_TOKEN);} [A-Za-z_][A-Za-z0-9_]* { yylval.info.string = create_string_from_yytext(); if (is_defined_type(yylval.info.string)) { - RETURN(type_id); + RETURN(type_identifier); } else if (is_enumeration_constant(yylval.info.string)) { RETURN(enumeration_constant); } else { diff --git a/cod/pregen_source/Windows/cod.tab.c b/cod/pregen_source/Windows/cod.tab.c index 55f7fbfbdb..531a170505 100644 --- a/cod/pregen_source/Windows/cod.tab.c +++ b/cod/pregen_source/Windows/cod.tab.c @@ -387,7 +387,7 @@ extern int yydebug; string_constant = 335, /* string_constant */ floating_constant = 336, /* floating_constant */ identifier_ref = 337, /* identifier_ref */ - type_id = 338, /* type_id */ + type_identifier = 338, /* type_id */ enumeration_constant = 339 /* enumeration_constant */ }; typedef enum yytokentype yytoken_kind_t; @@ -508,7 +508,7 @@ enum yysymbol_kind_t YYSYMBOL_string_constant = 80, /* string_constant */ YYSYMBOL_floating_constant = 81, /* floating_constant */ YYSYMBOL_identifier_ref = 82, /* identifier_ref */ - YYSYMBOL_type_id = 83, /* type_id */ + YYSYMBOL_type_identifier = 83, /* type_id */ YYSYMBOL_enumeration_constant = 84, /* enumeration_constant */ YYSYMBOL_YYACCEPT = 85, /* $accept */ YYSYMBOL_start = 86, /* start */ @@ -1019,7 +1019,7 @@ static const char *const yytname[] = "ENUM", "UNION", "CONST", "SIZEOF", "TYPEDEF", "RETURN_TOKEN", "CONTINUE", "BREAK", "GOTO", "PRINT", "COMMA", "DOTDOTDOT", "integer_constant", "character_constant", "string_constant", - "floating_constant", "identifier_ref", "type_id", "enumeration_constant", + "floating_constant", "identifier_ref", "type_identifier", "enumeration_constant", "$accept", "start", "primary_expression", "postfix_expression", "argument_expression_list", "unary_expression", "unary_operator", "cast_expression", "multiplicative_expression", "additive_expression", @@ -2860,7 +2860,7 @@ yyparse (void) #line 2861 "cod.tab.c" break; - case 104: /* type_specifier: type_id */ + case 104: /* type_specifier: type_identifier */ #line 1042 "cod.y" { (yyval.reference) = cod_new_identifier(); diff --git a/cod/pregen_source/Windows/cod.tab.h b/cod/pregen_source/Windows/cod.tab.h index b431ca0b3e..9dfb351295 100644 --- a/cod/pregen_source/Windows/cod.tab.h +++ b/cod/pregen_source/Windows/cod.tab.h @@ -119,7 +119,7 @@ string_constant = 335, floating_constant = 336, identifier_ref = 337, - type_id = 338, + type_identifier = 338, enumeration_constant = 339 }; #endif @@ -204,7 +204,7 @@ #define string_constant 335 #define floating_constant 336 #define identifier_ref 337 -#define type_id 338 +#define type_identifier 338 #define enumeration_constant 339 diff --git a/cod/pregen_source/Windows/cod.y b/cod/pregen_source/Windows/cod.y index d71e908d4d..264b112904 100644 --- a/cod/pregen_source/Windows/cod.y +++ b/cod/pregen_source/Windows/cod.y @@ -286,7 +286,7 @@ cod_dup_list(sm_list list) %token string_constant %token floating_constant %token identifier_ref -%token type_id +%token type_identifier %token enumeration_constant %type struct_or_union; @@ -1039,7 +1039,7 @@ type_specifier: $$->node.type_specifier.lx_srcpos = $1.lx_srcpos; $$->node.type_specifier.token = STRING; } - | type_id { + | type_identifier { $$ = cod_new_identifier(); $$->node.identifier.lx_srcpos = $1.lx_srcpos; $$->node.identifier.id = $1.string; diff --git a/cod/pregen_source/Windows/lex.yy.c b/cod/pregen_source/Windows/lex.yy.c index b2a48531fa..100cc2fc18 100644 --- a/cod/pregen_source/Windows/lex.yy.c +++ b/cod/pregen_source/Windows/lex.yy.c @@ -1429,7 +1429,7 @@ YY_RULE_SETUP { yylval.info.string = create_string_from_yytext(); if (is_defined_type(yylval.info.string)) { - RETURN(type_id); + RETURN(type_identifier); } else if (is_enumeration_constant(yylval.info.string)) { RETURN(enumeration_constant); } else { From d5dcb9876b88b75545445df23b539b1e50250bc3 Mon Sep 17 00:00:00 2001 From: Junmin Gu Date: Wed, 20 Sep 2023 05:57:28 -0700 Subject: [PATCH 144/183] added support to query BP5 files (#3809) * added support to query BP5 files * size_type fix * updated python test and added to ctest * moved QueryWorker to the beginstep/endstep loop because bp5 metadata loading pattern deprecate bp3 engine test and replaced with bp5 engine test * clang-format * clang-format * removed some comments * flake8 * correct previous commit. Wrong files changed * furthur formatting * removed comments * added new doc file * Polished query.rst * more touch ups * more clean ups * subblock calculated by the helper function is relative to block so added block start before return to user * clang-format fix * clang-format fix --- bindings/CXX11/adios2/cxx11/Query.cpp | 8 +- bindings/CXX11/adios2/cxx11/Query.h | 8 +- bindings/Python/py11Query.cpp | 3 +- bindings/Python/py11Query.h | 2 - docs/user_guide/source/advanced/query.rst | 93 +++++++++++ examples/query/test.cpp | 63 +++---- source/adios2/toolkit/query/BlockIndex.h | 91 +++++----- source/adios2/toolkit/query/Query.cpp | 2 +- testing/adios2/bindings/python/CMakeLists.txt | 1 + testing/adios2/bindings/python/TestQuery.py | 155 +++++++++++------- .../adios2/performance/query/TestBPQuery.cpp | 18 +- 11 files changed, 299 insertions(+), 145 deletions(-) create mode 100644 docs/user_guide/source/advanced/query.rst diff --git a/bindings/CXX11/adios2/cxx11/Query.cpp b/bindings/CXX11/adios2/cxx11/Query.cpp index 23bbd8c6c6..140d1485c6 100644 --- a/bindings/CXX11/adios2/cxx11/Query.cpp +++ b/bindings/CXX11/adios2/cxx11/Query.cpp @@ -14,7 +14,13 @@ QueryWorker::QueryWorker(const std::string &configFile, adios2::Engine &reader) delete m; } -void QueryWorker::GetResultCoverage(adios2::Box &outputSelection, +void QueryWorker::GetResultCoverage(std::vector> &touched_blocks) +{ + adios2::Box empty; + GetResultCoverage(empty, touched_blocks); +} + +void QueryWorker::GetResultCoverage(const adios2::Box &outputSelection, std::vector> &touched_blocks) { if (m_Worker) diff --git a/bindings/CXX11/adios2/cxx11/Query.h b/bindings/CXX11/adios2/cxx11/Query.h index a4dd046d38..1b26ab62d6 100644 --- a/bindings/CXX11/adios2/cxx11/Query.h +++ b/bindings/CXX11/adios2/cxx11/Query.h @@ -26,9 +26,15 @@ class Worker; class QueryWorker { public: + // configFile has query, can be either xml or json QueryWorker(const std::string &configFile, adios2::Engine &engine); - void GetResultCoverage(adios2::Box &, + // touched_blocks is a list of regions specified by (start, count), + // that contains data that satisfies the query file + void GetResultCoverage(std::vector> &touched_blocks); + + // supply output bound for the results + void GetResultCoverage(const adios2::Box &, std::vector> &touched_blocks); private: diff --git a/bindings/Python/py11Query.cpp b/bindings/Python/py11Query.cpp index 87c2014967..0e82cae6bb 100644 --- a/bindings/Python/py11Query.cpp +++ b/bindings/Python/py11Query.cpp @@ -30,9 +30,8 @@ Query::operator bool() const noexcept { return (m_QueryWorker == nullptr) ? fals std::vector> Query::GetResult() { - // std::cout<<"Do something"< empty; // look into all data std::vector> touched_blocks; + adios2::Box empty; m_QueryWorker->GetResultCoverage(empty, touched_blocks); return touched_blocks; } diff --git a/bindings/Python/py11Query.h b/bindings/Python/py11Query.h index df04fd3e59..b8cd29018b 100644 --- a/bindings/Python/py11Query.h +++ b/bindings/Python/py11Query.h @@ -34,8 +34,6 @@ class Query explicit operator bool() const noexcept; std::vector> GetResult(); - // const Box< Dims > & refinedSelectionIfAny, - // std::vector< Box< Dims > > &touched_blocks private: Query(adios2::query::Worker *qw); diff --git a/docs/user_guide/source/advanced/query.rst b/docs/user_guide/source/advanced/query.rst new file mode 100644 index 0000000000..852e0e52dc --- /dev/null +++ b/docs/user_guide/source/advanced/query.rst @@ -0,0 +1,93 @@ +################# +ADIOS2 query API +################# + +The query API in ADIOS2 allows a client to pass a query in XML or json format, +and get back a list of blocks or subblocks that contains hits. +Both BP4 and BP5 engines are supported. + + +The interface +============= +User is expected to pass a query file (configFile), and init a read engine (engine) +to construct a query and evaluate using the engine. +(note that the engine and query should be using the same ADIOS IO) + +.. code-block:: c++ + + class QueryWorker + { + public: + // configFile has query, can be either xml or json + QueryWorker(const std::string &configFile, adios2::Engine &engine); + + // touched_blocks is a list of regions specified by (start, count), + // that contains data that satisfies the query file + void GetResultCoverage(std::vector> &touched_blocks); + ... + } + +A Sample Compound Query +---------------------- + +This query targets a 1D variable "doubleV", data of interest is (x > 6.6) or (x < -0.17) or (2.8 < x < 2.9) +In addition, this query also specied an output region [start=5,count=80]. + + +.. code-block:: xml + + + + + + + + + + + + + + + + + + +Code EXAMPLES: +============== +C++: +---- +.. code-block:: c++ + + while (reader.BeginStep() == adios2::StepStatus::OK) + { + adios2::QueryWorker w = adios2::QueryWorker(queryFile, reader); + w.GetResultCoverage(touched_blocks); + + std::cout << " ... now can read out touched blocks ... size=" << touched_blocks.size() + << std::endl; + } + + +The Full C++ example is here: + https://github.com/ornladios/ADIOS2/blob/master/examples/query/test.cpp + + +Python: +------- + +.. code-block:: python + + while (reader.BeginStep() == adios2.StepStatus.OK): + # say only rank 0 wants to process result + var = [queryIO.InquireVariable("T")] + + if (rank == 0): + touched_blocks = w.GetResult() + doAnalysis(reader, touched_blocks, var) + +Full python example is here: + https://github.com/ornladios/ADIOS2/blob/master/testing/adios2/bindings/python/TestQuery.py + + This example generates data, the query file (in xml) and runs the query, all in python. + diff --git a/examples/query/test.cpp b/examples/query/test.cpp index 94da39a0dc..b97a2d7714 100644 --- a/examples/query/test.cpp +++ b/examples/query/test.cpp @@ -12,6 +12,36 @@ // #include "adios2/toolkit/query/Worker.h" +void queryWithStreaming(adios2::IO &queryIO, std::string &dataFileName, std::string &queryFile) +{ + adios2::Engine reader = queryIO.Open(dataFileName, adios2::Mode::Read, MPI_COMM_WORLD); + // adios2::QueryWorker* worker = NULL; + queryIO.SetParameter("StreamReader", "true"); + std::vector> touched_blocks; + + while (reader.BeginStep() == adios2::StepStatus::OK) + { + adios2::QueryWorker w = adios2::QueryWorker(queryFile, reader); + w.GetResultCoverage(touched_blocks); + + std::cout << " ... now can read out touched blocks ... size=" << touched_blocks.size() + << std::endl; + for (auto n : touched_blocks) + { + std::ostringstream startStr; + std::ostringstream countStr; + for (size_t k = 0; k < n.first.size(); k++) + { + startStr << n.first[k] << " "; + countStr << n.second[k] << " "; + } + std::cout << "\t[" << startStr.str() << "] [" << countStr.str() << "]" << std::endl; + } + reader.EndStep(); + } + reader.Close(); +} + int main(int argc, char *argv[]) { int provided; @@ -47,43 +77,16 @@ int main(int argc, char *argv[]) adios2::ADIOS ad = adios2::ADIOS(configFileName, MPI_COMM_WORLD); adios2::IO queryIO = ad.DeclareIO("query"); - adios2::Engine reader = queryIO.Open(dataFileName, adios2::Mode::Read, MPI_COMM_WORLD); -#ifdef NEVER - adios2::QueryWorker w = adios2::QueryWorker(configFileName, reader); -#else + std::string queryFile = configFileName; if (argc > 3) { queryFile = argv[3]; } std::cout << "Testing query file ..." << queryFile << std::endl; - adios2::QueryWorker w = adios2::QueryWorker(queryFile, reader); -#endif - std::vector> touched_blocks; - while (reader.BeginStep() == adios2::StepStatus::OK) - { - adios2::Box empty; - w.GetResultCoverage(empty, touched_blocks); - // adios2::Box tt({10,10}, {12,12}); - // w.GetResultCoverage(tt, touched_blocks); - std::cout << " ... now can read out touched blocks ... size=" << touched_blocks.size() - << std::endl; - for (auto n : touched_blocks) - { - std::ostringstream startStr; - std::ostringstream countStr; - for (size_t k = 0; k < n.first.size(); k++) - { - startStr << n.first[k] << " "; - countStr << n.second[k] << " "; - } - std::cout << "\t[" << startStr.str() << "] [" << countStr.str() << "]" - << std::endl; - } - reader.EndStep(); - } - reader.Close(); + queryWithStreaming(queryIO, dataFileName, queryFile); + return 0; } catch (std::exception &e) diff --git a/source/adios2/toolkit/query/BlockIndex.h b/source/adios2/toolkit/query/BlockIndex.h index dc6bb8ee7a..94890de269 100644 --- a/source/adios2/toolkit/query/BlockIndex.h +++ b/source/adios2/toolkit/query/BlockIndex.h @@ -22,9 +22,9 @@ class BlockIndex }; public: - BlockIndex(adios2::core::Variable &var, adios2::core::IO &io, + BlockIndex(adios2::core::Variable *var, adios2::core::IO &io, adios2::core::Engine &reader) - : m_Var(var), m_IdxIO(io), m_IdxReader(reader) + : m_VarPtr(var), m_IdxIO(io), m_IdxReader(reader) { } @@ -32,18 +32,57 @@ class BlockIndex void Evaluate(const QueryVar &query, std::vector> &resultSubBlocks) { - RunBP4Stat(query, resultSubBlocks); + if (m_IdxReader.m_EngineType.find("5") != std::string::npos) // a bp5 reader + RunBP5Stat(query, resultSubBlocks); + else + RunBP4Stat(query, resultSubBlocks); + } + + void RunBP5Stat(const QueryVar &query, std::vector> &hitBlocks) + { + size_t currStep = m_IdxReader.CurrentStep(); + adios2::Dims currShape = m_VarPtr->Shape(); + if (!query.IsSelectionValid(currShape)) + return; + + auto MinBlocksInfo = m_IdxReader.MinBlocksInfo(*m_VarPtr, currStep); + if (!MinBlocksInfo) + { // no info, can't do anything + return; + } + for (auto &blockInfo : MinBlocksInfo->BlocksInfo) + { + Dims ss(MinBlocksInfo->Dims); + Dims cc(MinBlocksInfo->Dims); + for (std::vector::size_type i = 0; i < ss.size(); i++) + { + ss[i] = blockInfo.Start[i]; + cc[i] = blockInfo.Count[i]; + } + if (!query.TouchSelection(ss, cc)) + continue; + + T bmin = *(T *)&blockInfo.MinMax.MinUnion; + T bmax = *(T *)&blockInfo.MinMax.MaxUnion; + bool isHit = query.m_RangeTree.CheckInterval(bmin, bmax); + if (isHit) + { + adios2::Box box = {ss, cc}; + hitBlocks.push_back(box); + } + } + delete MinBlocksInfo; } void RunBP4Stat(const QueryVar &query, std::vector> &hitBlocks) { size_t currStep = m_IdxReader.CurrentStep(); - adios2::Dims currShape = m_Var.Shape(); + adios2::Dims currShape = m_VarPtr->Shape(); if (!query.IsSelectionValid(currShape)) return; std::vector::BPInfo> varBlocksInfo = - m_IdxReader.BlocksInfo(m_Var, currStep); + m_IdxReader.BlocksInfo(*m_VarPtr, currStep); for (auto &blockInfo : varBlocksInfo) { @@ -62,6 +101,10 @@ class BlockIndex { adios2::Box currSubBlock = adios2::helper::GetSubBlock(blockInfo.Count, blockInfo.SubBlockInfo, i); + for (size_t d = 0; d < blockInfo.Count.size(); ++d) + { + currSubBlock.first[d] += blockInfo.Start[d]; + } if (!query.TouchSelection(currSubBlock.first, currSubBlock.second)) continue; hitBlocks.push_back(currSubBlock); @@ -80,40 +123,12 @@ class BlockIndex } } - /* - void RunDefaultBPStat(const QueryVar &query, - std::vector> &hitBlocks) - { - size_t currStep = m_IdxReader.CurrentStep(); - adios2::Dims currShape = m_Var.Shape(); - if (!query.IsSelectionValid(currShape)) - return; - - std::vector::BPInfo> varBlocksInfo = - m_IdxReader.BlocksInfo(m_Var, currStep); - - for (auto &blockInfo : varBlocksInfo) - { - if (!query.TouchSelection(blockInfo.Start, blockInfo.Count)) - continue; - - T min = blockInfo.Min; - T max = blockInfo.Max; - - // std::cout<<" min: "< box = {blockInfo.Start, - blockInfo.Count}; - hitBlocks.push_back(box); - } - } - } - */ - Tree m_Content; - adios2::core::Variable m_Var; + + // can not be unique_ptr as it changes with bp5 through steps + // as BP5Deserializer::SetupForStep calls io.RemoveVariables() + // must use ptr as bp5 associates ptrs with blockinfo, see MinBlocksInfo() in bp5 + adios2::core::Variable *m_VarPtr; private: // diff --git a/source/adios2/toolkit/query/Query.cpp b/source/adios2/toolkit/query/Query.cpp index 97dc3517e6..6dc85b94c5 100644 --- a/source/adios2/toolkit/query/Query.cpp +++ b/source/adios2/toolkit/query/Query.cpp @@ -310,7 +310,7 @@ void QueryVar::BlockIndexEvaluate(adios2::core::IO &io, adios2::core::Engine &re if (varType == adios2::helper::GetDataType()) \ { \ core::Variable *var = io.InquireVariable(m_VarName); \ - BlockIndex idx(*var, io, reader); \ + BlockIndex idx(var, io, reader); \ idx.Evaluate(*this, touchedBlocks); \ } // ADIOS2_FOREACH_ATTRIBUTE_TYPE_1ARG(declare_type) //skip complex types diff --git a/testing/adios2/bindings/python/CMakeLists.txt b/testing/adios2/bindings/python/CMakeLists.txt index b90d79a346..dd3c292a75 100644 --- a/testing/adios2/bindings/python/CMakeLists.txt +++ b/testing/adios2/bindings/python/CMakeLists.txt @@ -25,6 +25,7 @@ if(ADIOS2_HAVE_MPI) add_python_mpi_test(BPBlocksInfo) add_python_mpi_test(BPChangingShapeHighLevelAPI) add_python_mpi_test(NullEngine) + add_python_mpi_test(Query) # Currently hangs in H5Fclose for unknown reasons #if(ADIOS2_HAVE_HDF5) # add_python_mpi_test(BPWriteTypesHighLevelAPI_HDF5) diff --git a/testing/adios2/bindings/python/TestQuery.py b/testing/adios2/bindings/python/TestQuery.py index f53df651f4..e406ce3cf5 100644 --- a/testing/adios2/bindings/python/TestQuery.py +++ b/testing/adios2/bindings/python/TestQuery.py @@ -1,21 +1,88 @@ +# from mpi4py import MPI import numpy as np import adios2 -import os +import sys # MPI comm = MPI.COMM_WORLD rank = comm.Get_rank() size = comm.Get_size() -configFile = './defaultConfig.xml' -queryFile = './sampleQuery.xml' -dataPath = './heat.bp' +# ####################################### +# # usage: [bp4 | bp5=default] ## +# ####################################### +numSteps = 5 +queryFile = 'query.xml' +targetVarName = 'var0' + +# User data +myArray = np.array([0, 1., 2., 3., 4., 5., 6., 7., 8., 9.]) +Nx = myArray.size + +# ADIOS MPI Communicator +adios = adios2.ADIOS(comm) + +supportedEngines = ['bp5', 'bp4'] +engineType = 'bp5' +if (len(sys.argv) > 1): + engineType = sys.argv[1].lower() + +if (engineType in supportedEngines): + if (rank == 0): + print('Using engine type:', engineType) +else: + sys.exit('specified engine does not exist') + + +dataFileName = 'test_' + engineType + '.bp' + + +def writeDataFile(): + bpIO = adios.DeclareIO("Writer") + bpIO.SetEngine(engineType) + + ioArray = bpIO.DefineVariable( + targetVarName, myArray, [size * Nx], [rank * Nx], + [Nx], adios2.ConstantDims) + + bpFileWriter = bpIO.Open(dataFileName, adios2.Mode.Write) + + for i in range(numSteps): + bpFileWriter.BeginStep() + bpFileWriter.Put(ioArray, i * 10.0 + myArray / (rank + 1), adios2.Mode.Sync) + bpFileWriter.EndStep() + + bpFileWriter.Close() + + +def createQueryFile(): + print(".. Writing query file to: ", queryFile) + + file1 = open(queryFile, 'w') + queryContent = [ + "\n", "\n", + " \n" + " \n", + " \n", + " \n", + " \n", " \n", + " \n", " \n", "\n" + ] + file1.writelines(queryContent) + file1.close() def doAnalysis(reader, touched_blocks, varList): print(" Step: ", reader.CurrentStep(), " num touched blocks: ", len(touched_blocks)) + if (0 == reader.CurrentStep()): + assert (len(touched_blocks) == min(size, 2)) + if (1 == reader.CurrentStep()): + assert (len(touched_blocks) == size) + if (1 < reader.CurrentStep()): + assert (len(touched_blocks) == 0) + values = [] data = {} @@ -29,79 +96,49 @@ def doAnalysis(reader, touched_blocks, varList): var.SetSelection(n) reader.Get(var, values, adios2.Mode.Sync) data[var].extend(values) - # do analysis with data here -def runQuery(): - adios = adios2.ADIOS(configFile, comm, True) - queryIO = adios.DeclareIO("query") - reader = queryIO.Open(dataPath, adios2.Mode.Read, comm) - w = adios2.Query(queryFile, reader) +def queryDataFile(): + # # use no mpi + adios_nompi = adios2.ADIOS() + queryIO = adios_nompi.DeclareIO("query") + reader = queryIO.Open(dataFileName, adios2.Mode.Read) + print("dataFile=", dataFileName, "queryFile=", queryFile) touched_blocks = [] print("Num steps: ", reader.Steps()) while (reader.BeginStep() == adios2.StepStatus.OK): - # say only rank 0 wants to process result - var = [queryIO.InquireVariable("T")] + # bp5 loads metadata after beginstep(), + # therefore query has to be called per step + w = adios2.Query(queryFile, reader) + # assume only rank 0 wants to process result + var = [queryIO.InquireVariable(targetVarName)] if (rank == 0): touched_blocks = w.GetResult() doAnalysis(reader, touched_blocks, var) - reader.EndStep() + reader.EndStep() reader.Close() -def createConfigFile(): - print(".. Writing config file to: ", configFile) - file1 = open(configFile, 'w') - - xmlContent = ["\n", - "\n", - "\n", - " \n", - " \n", - " \n", - " \n", - " \n", - "\n", "\n"] - - file1.writelines(xmlContent) - file1.close() - - -def createQueryFile(): - print(".. Writing query file to: ", queryFile) +def cleanUp(): + import os + import shutil + os.remove(queryFile) + shutil.rmtree(dataFileName) + print(" Cleanup generated files: ", queryFile, dataFileName) - file1 = open(queryFile, 'w') - queryContent = [ - "\n", "\n", - " \n" - " \n", - " \n", - " \n", - " \n", " \n", - " \n", " \n", "\n" - ] - file1.writelines(queryContent) - file1.close() +# +# actual setup: +# -if (os.path.exists(dataPath) is False): - print("Please generate data file:", dataPath, - " from heat transfer example first.") -else: - # configFile created - createConfigFile() +writeDataFile() - # queryFile Generated +if (0 == rank): createQueryFile() - - print(".. Running query against: ", dataPath) - runQuery() - - print("Now clean up.") - os.remove(queryFile) - os.remove(configFile) + queryDataFile() + cleanUp() diff --git a/testing/adios2/performance/query/TestBPQuery.cpp b/testing/adios2/performance/query/TestBPQuery.cpp index 1ae23c8e87..a3ff5ae4a2 100644 --- a/testing/adios2/performance/query/TestBPQuery.cpp +++ b/testing/adios2/performance/query/TestBPQuery.cpp @@ -14,8 +14,6 @@ #include -// #include "../engine/SmallTestData.h" - // std::string engineName; // comes from command line struct QueryTestData @@ -98,7 +96,6 @@ void BPQueryTest::QueryIntVar(const std::string &fname, adios2::ADIOS &adios, std::string queryFile = "./" + ioName + "test.xml"; //"./test.xml"; std::cout << ioName << std::endl; WriteXmlQuery1D(queryFile, ioName, "intV"); - adios2::QueryWorker w = adios2::QueryWorker(queryFile, bpReader); std::vector rr; if (engineName.compare("BP4") == 0) @@ -108,9 +105,9 @@ void BPQueryTest::QueryIntVar(const std::string &fname, adios2::ADIOS &adios, while (bpReader.BeginStep() == adios2::StepStatus::OK) { + adios2::QueryWorker w = adios2::QueryWorker(queryFile, bpReader); std::vector> touched_blocks; - adios2::Box empty; - w.GetResultCoverage(empty, touched_blocks); + w.GetResultCoverage(touched_blocks); ASSERT_EQ(touched_blocks.size(), rr[bpReader.CurrentStep()]); bpReader.EndStep(); } @@ -135,7 +132,6 @@ void BPQueryTest::QueryDoubleVar(const std::string &fname, adios2::ADIOS &adios, // std::string queryFile = "./.test.xml"; std::string queryFile = "./" + ioName + "test.xml"; WriteXmlQuery1D(queryFile, ioName, "doubleV"); - adios2::QueryWorker w = adios2::QueryWorker(queryFile, bpReader); std::vector rr; //= {0,9,9}; if (engineName.compare("BP4") == 0) @@ -144,9 +140,9 @@ void BPQueryTest::QueryDoubleVar(const std::string &fname, adios2::ADIOS &adios, rr = {0, 1, 1}; while (bpReader.BeginStep() == adios2::StepStatus::OK) { + adios2::QueryWorker w = adios2::QueryWorker(queryFile, bpReader); std::vector> touched_blocks; - adios2::Box empty; - w.GetResultCoverage(empty, touched_blocks); + w.GetResultCoverage(touched_blocks); ASSERT_EQ(touched_blocks.size(), rr[bpReader.CurrentStep()]); bpReader.EndStep(); } @@ -234,9 +230,9 @@ void BPQueryTest::WriteFile(const std::string &fname, adios2::ADIOS &adios, // 1D test data //****************************************************************************** -TEST_F(BPQueryTest, BP3) +TEST_F(BPQueryTest, BP5) { - std::string engineName = "BP3"; + std::string engineName = "BP5"; // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array const std::string fname(engineName + "Query1D.bp"); @@ -265,7 +261,7 @@ TEST_F(BPQueryTest, BP4) std::string engineName = "BP4"; // Each process would write a 1x8 array and all processes would // form a mpiSize * Nx 1D array - const std::string fname(engineName + "4Query1D.bp"); + const std::string fname(engineName + "Query1D.bp"); #if ADIOS2_USE_MPI adios2::ADIOS adios(MPI_COMM_WORLD); From 49b0eadd5e04f9d0f0d5933751e18c8ba4092016 Mon Sep 17 00:00:00 2001 From: Vicente Bolea Date: Wed, 20 Sep 2023 16:59:47 -0400 Subject: [PATCH 145/183] install: export adios2 device variables (#3819) --- cmake/adios2-config-common.cmake.in | 5 +++++ 1 file changed, 5 insertions(+) diff --git a/cmake/adios2-config-common.cmake.in b/cmake/adios2-config-common.cmake.in index 0d536e8904..04a41531f1 100644 --- a/cmake/adios2-config-common.cmake.in +++ b/cmake/adios2-config-common.cmake.in @@ -12,6 +12,11 @@ endif() set(ADIOS2_HAVE_Fortran @ADIOS2_HAVE_Fortran@) set(ADIOS2_HAVE_MPI @ADIOS2_HAVE_MPI@) +set(ADIOS2_HAVE_CUDA @ADIOS2_HAVE_CUDA@) +set(ADIOS2_HAVE_Kokkos @ADIOS2_HAVE_Kokkos@) +set(ADIOS2_HAVE_Kokkos_CUDA @ADIOS2_HAVE_Kokkos_CUDA@) +set(ADIOS2_HAVE_Kokkos_HIP @ADIOS2_HAVE_Kokkos_HIP@) +set(ADIOS2_HAVE_Kokkos_SYCL @ADIOS2_HAVE_Kokkos_SYCL@) function(adios2_add_thirdparty_target PackageName) add_library(adios2::thirdparty::${PackageName} INTERFACE IMPORTED) From 26391d959ca9d5141ee8692009249e98d6ffcff6 Mon Sep 17 00:00:00 2001 From: Vicente Bolea Date: Thu, 21 Sep 2023 18:24:18 -0400 Subject: [PATCH 146/183] ci: fix codeql ignore path (#3772) * ci: fix codeql ignore path --- .github/workflows/everything.yml | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/.github/workflows/everything.yml b/.github/workflows/everything.yml index 9590a845cb..b9ee1d0d32 100644 --- a/.github/workflows/everything.yml +++ b/.github/workflows/everything.yml @@ -535,8 +535,10 @@ jobs: with: languages: ${{ matrix.language }} config: | + paths: + - source paths-ignore: - - source/thirdparty/ + - source/thirdparty - name: Setup run: gha/scripts/ci/gh-actions/linux-setup.sh - name: Update From 2884f713d1376f6b1ee65584c8edb730c6229776 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Fri, 22 Sep 2023 14:52:26 -0400 Subject: [PATCH 147/183] Import tests from bp to staging common, implement memory selection in SST --- source/adios2/engine/sst/SstWriter.tcc | 56 +++++++-- .../bp/TestBPWriteMemorySelectionRead.cpp | 114 ++++++++++++++---- .../engine/staging-common/CMakeLists.txt | 5 + .../engine/staging-common/TestSupp.cmake | 12 ++ 4 files changed, 157 insertions(+), 30 deletions(-) diff --git a/source/adios2/engine/sst/SstWriter.tcc b/source/adios2/engine/sst/SstWriter.tcc index b2e850500f..237c902d8e 100644 --- a/source/adios2/engine/sst/SstWriter.tcc +++ b/source/adios2/engine/sst/SstWriter.tcc @@ -70,19 +70,61 @@ void SstWriter::PutSyncCommon(Variable &variable, const T *values) } else { - if (variable.m_Type == DataType::String) + if (!variable.m_MemoryCount.empty()) { - std::string &source = *(std::string *)values; - void *p = &(source[0]); + size_t ObjSize; + if (variable.m_Type == DataType::Struct) + { + ObjSize = variable.m_ElementSize; + } + else + { + ObjSize = helper::GetDataTypeSize(variable.m_Type); + } + + const bool sourceRowMajor = helper::IsRowMajor(m_IO.m_HostLanguage); + helper::DimsArray MemoryStart(variable.m_MemoryStart); + helper::DimsArray MemoryCount(variable.m_MemoryCount); + helper::DimsArray varCount(variable.m_Count); + + int DimCount = (int)variable.m_Count.size(); + helper::DimsArray ZeroDims(DimCount, (size_t)0); + // get a temporary span then fill with memselection now + format::BufferV::BufferPos bp5span(0, 0, 0); + m_BP5Serializer->Marshal((void *)&variable, variable.m_Name.c_str(), variable.m_Type, variable.m_ElementSize, DimCount, Shape, - Count, Start, &p, true, nullptr); + Count, Start, nullptr, false, &bp5span); + void *ptr = m_BP5Serializer->GetPtr(bp5span.bufferIdx, bp5span.posInBuffer); + + if (!sourceRowMajor) + { + std::reverse(MemoryStart.begin(), MemoryStart.end()); + std::reverse(MemoryCount.begin(), MemoryCount.end()); + std::reverse(varCount.begin(), varCount.end()); + } + helper::NdCopy((const char *)values, helper::CoreDims(ZeroDims), MemoryCount, + sourceRowMajor, false, (char *)ptr, MemoryStart, varCount, + sourceRowMajor, false, (int)ObjSize, helper::CoreDims(), + helper::CoreDims(), helper::CoreDims(), helper::CoreDims(), + false /* safemode */, variable.m_MemSpace); } else { - m_BP5Serializer->Marshal((void *)&variable, variable.m_Name.c_str(), - variable.m_Type, variable.m_ElementSize, DimCount, Shape, - Count, Start, values, true, nullptr); + if (variable.m_Type == DataType::String) + { + std::string &source = *(std::string *)values; + void *p = &(source[0]); + m_BP5Serializer->Marshal((void *)&variable, variable.m_Name.c_str(), + variable.m_Type, variable.m_ElementSize, DimCount, + Shape, Count, Start, &p, true, nullptr); + } + else + { + m_BP5Serializer->Marshal((void *)&variable, variable.m_Name.c_str(), + variable.m_Type, variable.m_ElementSize, DimCount, + Shape, Count, Start, values, true, nullptr); + } } } } diff --git a/testing/adios2/engine/bp/TestBPWriteMemorySelectionRead.cpp b/testing/adios2/engine/bp/TestBPWriteMemorySelectionRead.cpp index ea52b5753d..aa8d516b21 100644 --- a/testing/adios2/engine/bp/TestBPWriteMemorySelectionRead.cpp +++ b/testing/adios2/engine/bp/TestBPWriteMemorySelectionRead.cpp @@ -15,6 +15,8 @@ #include "../SmallTestData.h" std::string engineName; // comes from command line +bool DoWrite = true; +bool DoRead = true; namespace { @@ -166,9 +168,13 @@ void AssignStep3D(const size_t step, std::vector> &vector, } // end anonymous namespace +#if ADIOS2_USE_MPI +MPI_Comm testComm; +#endif + void BPSteps1D(const size_t ghostCells) { - const std::string fname("BPSteps1D_" + std::to_string(ghostCells) + ".bp"); + const std::string fname("BPSteps1D_" + std::to_string(ghostCells)); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -178,15 +184,16 @@ void BPSteps1D(const size_t ghostCells) const size_t NSteps = 3; #if ADIOS2_USE_MPI - MPI_Comm_rank(MPI_COMM_WORLD, &mpiRank); - MPI_Comm_size(MPI_COMM_WORLD, &mpiSize); + MPI_Comm_rank(testComm, &mpiRank); + MPI_Comm_size(testComm, &mpiSize); #endif #if ADIOS2_USE_MPI - adios2::ADIOS adios(MPI_COMM_WORLD); + adios2::ADIOS adios(testComm); #else adios2::ADIOS adios; #endif + if (DoWrite) { adios2::IO io = adios.DeclareIO("WriteIO"); @@ -195,6 +202,7 @@ void BPSteps1D(const size_t ghostCells) io.SetEngine(engineName); } + io.SetParameters("StatsLevel=1"); const adios2::Dims shape{static_cast(Nx * mpiSize)}; const adios2::Dims start{static_cast(Nx * mpiRank)}; const adios2::Dims count{Nx}; @@ -256,9 +264,10 @@ void BPSteps1D(const size_t ghostCells) bpWriter.Close(); } #if ADIOS2_USE_MPI - MPI_Barrier(MPI_COMM_WORLD); + MPI_Barrier(testComm); #endif // Reader + if (DoRead) { adios2::IO io = adios.DeclareIO("ReadIO"); @@ -377,7 +386,7 @@ void BPSteps1D(const size_t ghostCells) void BPSteps2D4x2(const size_t ghostCells) { - const std::string fname("BPSteps2D4x2_" + std::to_string(ghostCells) + ".bp"); + const std::string fname("BPSteps2D4x2_" + std::to_string(ghostCells)); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -391,15 +400,16 @@ void BPSteps2D4x2(const size_t ghostCells) const size_t NSteps = 3; #if ADIOS2_USE_MPI - MPI_Comm_rank(MPI_COMM_WORLD, &mpiRank); - MPI_Comm_size(MPI_COMM_WORLD, &mpiSize); + MPI_Comm_rank(testComm, &mpiRank); + MPI_Comm_size(testComm, &mpiSize); #endif #if ADIOS2_USE_MPI - adios2::ADIOS adios(MPI_COMM_WORLD); + adios2::ADIOS adios(testComm); #else adios2::ADIOS adios; #endif + if (DoWrite) { adios2::IO io = adios.DeclareIO("WriteIO"); @@ -470,9 +480,10 @@ void BPSteps2D4x2(const size_t ghostCells) bpWriter.Close(); } #if ADIOS2_USE_MPI - MPI_Barrier(MPI_COMM_WORLD); + MPI_Barrier(testComm); #endif // Reader + if (DoRead) { adios2::IO io = adios.DeclareIO("ReadIO"); @@ -601,7 +612,7 @@ void BPSteps2D4x2(const size_t ghostCells) void BPSteps3D8x2x4(const size_t ghostCells) { - const std::string fname("BPSteps3D8x2x4_" + std::to_string(ghostCells) + ".bp"); + const std::string fname("BPSteps3D8x2x4_" + std::to_string(ghostCells)); int mpiRank = 0, mpiSize = 1; // Number of rows @@ -617,15 +628,16 @@ void BPSteps3D8x2x4(const size_t ghostCells) const size_t NSteps = 3; #if ADIOS2_USE_MPI - MPI_Comm_rank(MPI_COMM_WORLD, &mpiRank); - MPI_Comm_size(MPI_COMM_WORLD, &mpiSize); + MPI_Comm_rank(testComm, &mpiRank); + MPI_Comm_size(testComm, &mpiSize); #endif #if ADIOS2_USE_MPI - adios2::ADIOS adios(MPI_COMM_WORLD); + adios2::ADIOS adios(testComm); #else adios2::ADIOS adios; #endif + if (DoWrite) { adios2::IO io = adios.DeclareIO("WriteIO"); @@ -698,9 +710,10 @@ void BPSteps3D8x2x4(const size_t ghostCells) bpWriter.Close(); } #if ADIOS2_USE_MPI - MPI_Barrier(MPI_COMM_WORLD); + MPI_Barrier(testComm); #endif // Reader + if (DoRead) { adios2::IO io = adios.DeclareIO("ReadIO"); @@ -878,25 +891,80 @@ INSTANTIATE_TEST_SUITE_P(ghostCells, BPWriteMemSelReadVector, ::testing::Values( int main(int argc, char **argv) { + int result; + ::testing::InitGoogleTest(&argc, argv); + int bare_arg = 0; + + for (int i = 1; i < argc; i++) + { + if (strcmp(argv[i], "-do_write") == 0) + { + DoWrite = true; + DoRead = false; + } + else if (strcmp(argv[i], "-do_read") == 0) + { + DoWrite = false; + DoRead = true; + } + else if (argv[i][0] == '-') + { + std::cerr << "Unknown argument: " << argv[i] << std::endl; + exit(1); + } + else + { + std::string fname; + std::string engineParams; + if (bare_arg == 0) + { + /* first arg without -- is engine */ + engineName = std::string(argv[1]); + bare_arg++; + } + else if (bare_arg == 1) + { + /* second arg without -- is filename */ + // fname = std::string(argv[1]); + bare_arg++; + } + else if (bare_arg == 2) + { + // engineParams = ParseEngineParams(argv[1]); + bare_arg++; + } + else + { + + throw std::invalid_argument("Unknown argument \"" + std::string(argv[1]) + "\""); + } + } + } + #if ADIOS2_USE_MPI int provided; + int thread_support_level = + (engineName == "SST" || engineName == "sst") ? MPI_THREAD_MULTIPLE : MPI_THREAD_SINGLE; // MPI_THREAD_MULTIPLE is only required if you enable the SST MPI_DP - MPI_Init_thread(nullptr, nullptr, MPI_THREAD_MULTIPLE, &provided); -#endif + MPI_Init_thread(nullptr, nullptr, thread_support_level, &provided); - int result; - ::testing::InitGoogleTest(&argc, argv); + int key; + MPI_Comm_rank(MPI_COMM_WORLD, &key); - if (argc > 1) - { - engineName = std::string(argv[1]); - } + const unsigned int color = (DoRead & !DoWrite) ? 1 : 0; + + MPI_Comm_split(MPI_COMM_WORLD, color, key, &testComm); +#endif result = RUN_ALL_TESTS(); #if ADIOS2_USE_MPI +#ifdef CRAY_MPICH_VERSION + MPI_Barrier(MPI_COMM_WORLD); +#else MPI_Finalize(); +#endif #endif return result; diff --git a/testing/adios2/engine/staging-common/CMakeLists.txt b/testing/adios2/engine/staging-common/CMakeLists.txt index a5a3f09056..ee20d68b8c 100644 --- a/testing/adios2/engine/staging-common/CMakeLists.txt +++ b/testing/adios2/engine/staging-common/CMakeLists.txt @@ -149,8 +149,13 @@ set (ALL_SIMPLE_TESTS "") list (APPEND ALL_SIMPLE_TESTS ${SIMPLE_TESTS} ${SIMPLE_FORTRAN_TESTS} ${SIMPLE_MPI_TESTS} ${SIMPLE_ZFP_TESTS}) set (SST_SPECIFIC_TESTS "") +import_bp_test(WriteMemorySelectionRead 1 1) +list (APPEND SST_SPECIFIC_TESTS "WriteMemorySelectionRead.1x1") list (APPEND SST_SPECIFIC_TESTS "1x1.SstRUDP;1x1.LocalMultiblock;RoundRobinDistribution.1x1x3;AllToAllDistribution.1x1x3;OnDemandSingle.1x1") + if (ADIOS2_HAVE_MPI) + import_bp_test(WriteMemorySelectionRead 3 3) + list (APPEND SST_SPECIFIC_TESTS "WriteMemorySelectionRead.3x3") list (APPEND SST_SPECIFIC_TESTS "2x3.SstRUDP;2x1.LocalMultiblock;5x3.LocalMultiblock;") endif() diff --git a/testing/adios2/engine/staging-common/TestSupp.cmake b/testing/adios2/engine/staging-common/TestSupp.cmake index 13ce1765a4..ca63109a77 100644 --- a/testing/adios2/engine/staging-common/TestSupp.cmake +++ b/testing/adios2/engine/staging-common/TestSupp.cmake @@ -323,3 +323,15 @@ function(from_hex HEX DEC) set(${DEC} ${_res} PARENT_SCOPE) endfunction() +function(import_bp_test BASENAME WRITE_SCALE READ_SCALE) + set (WRITER_POSTFIX "Serial") + set (READER_POSTFIX "Serial") + if (${WRITE_SCALE} GREATER 1) + set (WRITER_POSTFIX "MPI") + endif() + if (${READ_SCALE} GREATER 1) + set (READER_POSTFIX "MPI") + endif() + set (${BASENAME}.${WRITE_SCALE}x${READ_SCALE}_CMD "run_test.py.$ -nw ${WRITE_SCALE} -nr ${READ_SCALE} --warg=-do_write --rarg=-do_read -w $ -r $" PARENT_SCOPE) + +endfunction() From 51f7b6f2f390d8044b8d4383344198e313fd1f53 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Tue, 26 Sep 2023 16:22:32 -0400 Subject: [PATCH 148/183] Try always using the MPI version --- testing/adios2/engine/staging-common/TestSupp.cmake | 8 +------- 1 file changed, 1 insertion(+), 7 deletions(-) diff --git a/testing/adios2/engine/staging-common/TestSupp.cmake b/testing/adios2/engine/staging-common/TestSupp.cmake index ca63109a77..7106ae5184 100644 --- a/testing/adios2/engine/staging-common/TestSupp.cmake +++ b/testing/adios2/engine/staging-common/TestSupp.cmake @@ -326,12 +326,6 @@ endfunction() function(import_bp_test BASENAME WRITE_SCALE READ_SCALE) set (WRITER_POSTFIX "Serial") set (READER_POSTFIX "Serial") - if (${WRITE_SCALE} GREATER 1) - set (WRITER_POSTFIX "MPI") - endif() - if (${READ_SCALE} GREATER 1) - set (READER_POSTFIX "MPI") - endif() - set (${BASENAME}.${WRITE_SCALE}x${READ_SCALE}_CMD "run_test.py.$ -nw ${WRITE_SCALE} -nr ${READ_SCALE} --warg=-do_write --rarg=-do_read -w $ -r $" PARENT_SCOPE) + set (${BASENAME}.${WRITE_SCALE}x${READ_SCALE}_CMD "run_test.py.$ -nw ${WRITE_SCALE} -nr ${READ_SCALE} --warg=-do_write --rarg=-do_read -w $ -r $" PARENT_SCOPE) endfunction() From 5bde4908ff3009b02bfe54a404c5f88aed2b24d0 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Tue, 26 Sep 2023 20:25:32 -0400 Subject: [PATCH 149/183] Try always using the MPI version --- testing/adios2/engine/staging-common/TestSupp.cmake | 8 +++++++- 1 file changed, 7 insertions(+), 1 deletion(-) diff --git a/testing/adios2/engine/staging-common/TestSupp.cmake b/testing/adios2/engine/staging-common/TestSupp.cmake index 7106ae5184..dcc9305093 100644 --- a/testing/adios2/engine/staging-common/TestSupp.cmake +++ b/testing/adios2/engine/staging-common/TestSupp.cmake @@ -326,6 +326,12 @@ endfunction() function(import_bp_test BASENAME WRITE_SCALE READ_SCALE) set (WRITER_POSTFIX "Serial") set (READER_POSTFIX "Serial") - set (${BASENAME}.${WRITE_SCALE}x${READ_SCALE}_CMD "run_test.py.$ -nw ${WRITE_SCALE} -nr ${READ_SCALE} --warg=-do_write --rarg=-do_read -w $ -r $" PARENT_SCOPE) + if(ADIOS2_HAVE_MPI) + set (WRITER_POSTFIX "MPI") + endif() + if(ADIOS2_HAVE_MPI) + set (READER_POSTFIX "MPI") + endif() + set (${BASENAME}.${WRITE_SCALE}x${READ_SCALE}_CMD "run_test.py.$ -nw ${WRITE_SCALE} -nr ${READ_SCALE} --warg=-do_write --rarg=-do_read -w $ -r $" PARENT_SCOPE) endfunction() From 700839ddea71270ce05408110872cc340d3606d9 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Sat, 30 Sep 2023 15:22:35 -0400 Subject: [PATCH 150/183] Add prototype testing of remote functionality (#3830) --- source/adios2/toolkit/remote/Remote.cpp | 4 +- source/adios2/toolkit/remote/Remote.h | 20 +-- .../adios2/toolkit/remote/remote_common.cpp | 19 +++ source/adios2/toolkit/remote/remote_common.h | 13 ++ .../adios2/toolkit/remote/remote_server.cpp | 158 +++++++++++++++--- testing/adios2/engine/bp/CMakeLists.txt | 19 +++ 6 files changed, 191 insertions(+), 42 deletions(-) diff --git a/source/adios2/toolkit/remote/Remote.cpp b/source/adios2/toolkit/remote/Remote.cpp index 13f46dbdc7..0fe3199420 100644 --- a/source/adios2/toolkit/remote/Remote.cpp +++ b/source/adios2/toolkit/remote/Remote.cpp @@ -54,8 +54,8 @@ void Remote::InitCMData() { std::lock_guard lockGuard(m_CMInitMutex); bool first = true; - auto &CM = CManagerSingleton::Instance(first); - ev_state.cm = CM.m_cm; + auto CM = CManagerSingleton::Instance(first); + ev_state.cm = CM->m_cm; RegisterFormats(ev_state); if (first) { diff --git a/source/adios2/toolkit/remote/Remote.h b/source/adios2/toolkit/remote/Remote.h index f6b16bd304..75824cdc31 100644 --- a/source/adios2/toolkit/remote/Remote.h +++ b/source/adios2/toolkit/remote/Remote.h @@ -69,28 +69,15 @@ class CManagerSingleton #ifdef ADIOS2_HAVE_SST CManager m_cm = NULL; #endif - static CManagerSingleton &Instance(bool &first) + static CManagerSingleton *Instance(bool &first) { - // Since it's a static variable, if the class has already been created, - // it won't be created again. - // And it **is** thread-safe in C++11. - static CManagerSingleton myInstance; + static CManagerSingleton *ptr = new CManagerSingleton(); static bool internal_first = true; - // Return a reference to our instance. - first = internal_first; internal_first = false; - return myInstance; + return ptr; } - // delete copy and move constructors and assign operators - CManagerSingleton(CManagerSingleton const &) = delete; // Copy construct - CManagerSingleton(CManagerSingleton &&) = delete; // Move construct - CManagerSingleton &operator=(CManagerSingleton const &) = delete; // Copy assign - CManagerSingleton &operator=(CManagerSingleton &&) = delete; // Move assign - - // Any other public methods. - protected: #ifdef ADIOS2_HAVE_SST CManagerSingleton() { m_cm = CManager_create(); } @@ -101,7 +88,6 @@ class CManagerSingleton ~CManagerSingleton() {} #endif - // And any other protected methods. }; } // end namespace adios2 diff --git a/source/adios2/toolkit/remote/remote_common.cpp b/source/adios2/toolkit/remote/remote_common.cpp index 20870815d5..28be359240 100644 --- a/source/adios2/toolkit/remote/remote_common.cpp +++ b/source/adios2/toolkit/remote/remote_common.cpp @@ -96,6 +96,23 @@ FMField CloseFileList[] = { FMStructDescRec CloseFileStructs[] = {{"Close", CloseFileList, sizeof(struct _CloseFileMsg), NULL}, {NULL, NULL, 0, NULL}}; +FMField KillServerList[] = {{"KillResponseCondition", "integer", sizeof(long), + FMOffset(KillServerMsg, KillResponseCondition)}, + {NULL, NULL, 0, 0}}; + +FMStructDescRec KillServerStructs[] = { + {"KillServer", KillServerList, sizeof(struct _KillServerMsg), NULL}, {NULL, NULL, 0, NULL}}; + +FMField KillResponseList[] = { + {"KillResponseCondition", "integer", sizeof(long), + FMOffset(KillResponseMsg, KillResponseCondition)}, + {"Status", "string", sizeof(char *), FMOffset(KillResponseMsg, Status)}, + {NULL, NULL, 0, 0}}; + +FMStructDescRec KillResponseStructs[] = { + {"KillResponse", KillResponseList, sizeof(struct _KillResponseMsg), NULL}, + {NULL, NULL, 0, NULL}}; + void RegisterFormats(RemoteCommon::Remote_evpath_state &ev_state) { ev_state.OpenFileFormat = CMregister_format(ev_state.cm, RemoteCommon::OpenFileStructs); @@ -108,6 +125,8 @@ void RegisterFormats(RemoteCommon::Remote_evpath_state &ev_state) ev_state.ReadRequestFormat = CMregister_format(ev_state.cm, RemoteCommon::ReadRequestStructs); ev_state.ReadResponseFormat = CMregister_format(ev_state.cm, RemoteCommon::ReadResponseStructs); ev_state.CloseFileFormat = CMregister_format(ev_state.cm, RemoteCommon::CloseFileStructs); + ev_state.KillServerFormat = CMregister_format(ev_state.cm, RemoteCommon::KillServerStructs); + ev_state.KillResponseFormat = CMregister_format(ev_state.cm, RemoteCommon::KillResponseStructs); } } } diff --git a/source/adios2/toolkit/remote/remote_common.h b/source/adios2/toolkit/remote/remote_common.h index 48102e7b2d..a8c5aee5db 100644 --- a/source/adios2/toolkit/remote/remote_common.h +++ b/source/adios2/toolkit/remote/remote_common.h @@ -87,6 +87,17 @@ typedef struct _CloseFileMsg void *FileHandle; } *CloseFileMsg; +typedef struct _KillServerMsg +{ + int KillResponseCondition; +} *KillServerMsg; + +typedef struct _KillResponseMsg +{ + int KillResponseCondition; + char *Status; +} *KillResponseMsg; + enum VerbosityLevel { NoVerbose = 0, // Generally no output (but not absolutely quiet?) @@ -111,6 +122,8 @@ struct Remote_evpath_state CMFormat ReadRequestFormat; CMFormat ReadResponseFormat; CMFormat CloseFileFormat; + CMFormat KillServerFormat; + CMFormat KillResponseFormat; }; void RegisterFormats(struct Remote_evpath_state &ev_state); diff --git a/source/adios2/toolkit/remote/remote_server.cpp b/source/adios2/toolkit/remote/remote_server.cpp index 523ab70c55..9ae911322d 100644 --- a/source/adios2/toolkit/remote/remote_server.cpp +++ b/source/adios2/toolkit/remote/remote_server.cpp @@ -30,6 +30,13 @@ using namespace adios2; int verbose = 1; ADIOS adios("C++"); +size_t TotalSimpleBytesSent = 0; +size_t TotalGetBytesSent = 0; +size_t TotalSimpleReads = 0; +size_t TotalGets = 0; +size_t SimpleFilesOpened = 0; +size_t ADIOSFilesOpened = 0; + std::string readable_size(uint64_t size) { constexpr const char FILE_SIZE_UNITS[8][3]{"B ", "KB", "MB", "GB", "TB", "PB", "EB", "ZB"}; @@ -178,6 +185,7 @@ static void OpenHandler(CManager cm, CMConnection conn, void *vevent, void *clie CMconn_register_close_handler(conn, ConnCloseHandler, NULL); ADIOSFileMap[f->m_ID] = f; ConnToFileMap.emplace(conn, f->m_ID); + ADIOSFilesOpened++; } static void OpenSimpleHandler(CManager cm, CMConnection conn, void *vevent, void *client_data, @@ -198,6 +206,7 @@ static void OpenSimpleHandler(CManager cm, CMConnection conn, void *vevent, void CMconn_register_close_handler(conn, ConnCloseHandler, NULL); SimpleFileMap[f->m_ID] = f; ConnToFileMap.emplace(conn, f->m_ID); + SimpleFilesOpened++; } static void GetRequestHandler(CManager cm, CMConnection conn, void *vevent, void *client_data, @@ -263,6 +272,8 @@ static void GetRequestHandler(CManager cm, CMConnection conn, void *vevent, void << " for Get<" << TypeOfVar << ">(" << VarName << ")" << b << std::endl; \ f->m_BytesSent += Response.Size; \ f->m_OperationCount++; \ + TotalGetBytesSent += Response.Size; \ + TotalGets++; \ CMwrite(conn, ev_state->ReadResponseFormat, &Response); \ } ADIOS2_FOREACH_PRIMITIVE_STDTYPE_1ARG(GET) @@ -300,16 +311,78 @@ static void ReadRequestHandler(CManager cm, CMConnection conn, void *vevent, voi std::cout << "Returning " << readable_size(Response.Size) << " for Read " << std::endl; f->m_BytesSent += Response.Size; f->m_OperationCount++; + TotalSimpleBytesSent += Response.Size; + TotalSimpleReads++; CMwrite(conn, ev_state->ReadResponseFormat, &Response); free(tmp); } -void REVPServerRegisterHandlers(struct Remote_evpath_state &ev_state) +static void KillServerHandler(CManager cm, CMConnection conn, void *vevent, void *client_data, + attr_list attrs) +{ + KillServerMsg kill_msg = static_cast(vevent); + struct Remote_evpath_state *ev_state = static_cast(client_data); + _KillResponseMsg kill_response_msg; + memset(&kill_response_msg, 0, sizeof(kill_response_msg)); + kill_response_msg.KillResponseCondition = kill_msg->KillResponseCondition; + std::stringstream Status; + Status << "ADIOS files Opened: " << ADIOSFilesOpened << " (" << TotalGets << " gets for " + << readable_size(TotalGetBytesSent) << ") Simple files opened: " << SimpleFilesOpened + << " (" << TotalSimpleReads << " reads for " << readable_size(TotalSimpleBytesSent) + << ")"; + kill_response_msg.Status = strdup(Status.str().c_str()); + CMwrite(conn, ev_state->KillResponseFormat, &kill_response_msg); + free(kill_response_msg.Status); + exit(0); +} + +static void KillResponseHandler(CManager cm, CMConnection conn, void *vevent, void *client_data, + attr_list attrs) +{ + KillResponseMsg kill_response_msg = static_cast(vevent); + std::cout << "Server final status: " << kill_response_msg->Status << std::endl; + exit(0); +} + +void ServerRegisterHandlers(struct Remote_evpath_state &ev_state) { CMregister_handler(ev_state.OpenFileFormat, OpenHandler, &ev_state); CMregister_handler(ev_state.OpenSimpleFileFormat, OpenSimpleHandler, &ev_state); CMregister_handler(ev_state.GetRequestFormat, GetRequestHandler, &ev_state); CMregister_handler(ev_state.ReadRequestFormat, ReadRequestHandler, &ev_state); + CMregister_handler(ev_state.KillServerFormat, KillServerHandler, &ev_state); + CMregister_handler(ev_state.KillResponseFormat, KillResponseHandler, &ev_state); +} + +static const char *hostname = "localhost"; + +void connect_and_kill(int ServerPort) +{ + CManager cm = CManager_create(); + _KillServerMsg kill_msg; + struct Remote_evpath_state ev_state; + attr_list contact_list = create_attr_list(); + atom_t CM_IP_PORT = -1; + atom_t CM_IP_HOSTNAME = -1; + CM_IP_HOSTNAME = attr_atom_from_string("IP_HOST"); + CM_IP_PORT = attr_atom_from_string("IP_PORT"); + add_attr(contact_list, CM_IP_HOSTNAME, Attr_String, (attr_value)hostname); + add_attr(contact_list, CM_IP_PORT, Attr_Int4, (attr_value)ServerPort); + CMConnection conn = CMinitiate_conn(cm, contact_list); + if (!conn) + return; + + ev_state.cm = cm; + + RegisterFormats(ev_state); + + ServerRegisterHandlers(ev_state); + + memset(&kill_msg, 0, sizeof(kill_msg)); + kill_msg.KillResponseCondition = CMCondition_get(ev_state.cm, conn); + CMwrite(conn, ev_state.KillServerFormat, &kill_msg); + CMCondition_wait(ev_state.cm, kill_msg.KillResponseCondition); + exit(0); } static atom_t CM_IP_PORT = -1; @@ -318,9 +391,67 @@ int main(int argc, char **argv) { CManager cm; struct Remote_evpath_state ev_state; + int background = 0; + int kill_server = 0; + + for (int i = 1; i < argc; i++) + { + if (strcmp(argv[i], "-background") == 0) + { + background++; + } + else if (strcmp(argv[i], "-kill_server") == 0) + { + kill_server++; + } + if (argv[i][0] == '-') + { + size_t j = 1; + while (argv[i][j] != 0) + { + if (argv[i][j] == 'v') + { + verbose++; + } + else if (argv[i][j] == 'q') + { + verbose--; + } + j++; + } + } + else + { + fprintf(stderr, "Unknown argument \"%s\"\n", argv[i]); + fprintf(stderr, "Usage: remote_server [-background] [-kill_server] [-v] [-q]\n"); + exit(1); + } + } + + if (kill_server) + { + connect_and_kill(ServerPort); + exit(0); + } + if (background) + { + if (verbose) + { + printf("Forking server to background\n"); + } + if (fork() != 0) + { + /* I'm the parent, wait a sec to let the child start, then exit */ + sleep(1); + exit(0); + } + /* I'm the child, close IO FDs so that ctest continues. No verbosity here */ + verbose = 0; + close(0); + close(1); + close(2); + } - (void)argc; - (void)argv; cm = CManager_create(); CM_IP_PORT = attr_atom_from_string("IP_PORT"); attr_list listen_list = NULL; @@ -339,28 +470,9 @@ int main(int argc, char **argv) } ev_state.cm = cm; - while (argv[1] && (argv[1][0] == '-')) - { - size_t i = 1; - while (argv[1][i] != 0) - { - if (argv[1][i] == 'v') - { - verbose++; - } - else if (argv[1][i] == 'q') - { - verbose--; - } - i++; - } - argv++; - argc--; - } - RegisterFormats(ev_state); - REVPServerRegisterHandlers(ev_state); + ServerRegisterHandlers(ev_state); std::cout << "doing Run Network" << std::endl; CMrun_network(cm); diff --git a/testing/adios2/engine/bp/CMakeLists.txt b/testing/adios2/engine/bp/CMakeLists.txt index a57f950a23..10f724cc1b 100644 --- a/testing/adios2/engine/bp/CMakeLists.txt +++ b/testing/adios2/engine/bp/CMakeLists.txt @@ -106,6 +106,25 @@ bp_gtest_add_tests_helper(LargeMetadata MPI_ALLOW) set(BP5LargeMeta "Engine.BP.BPLargeMetadata.BPWrite1D_LargeMetadata.BP5.Serial") +if ((NOT WIN32) AND ADIOS2_HAVE_SST) +# prototype for remote server testing +# (we don't really use SST here, just EVPath, but ADIOS2_HAVE_SST is the most relevant conditional) + macro(add_remote_tests_helper testname) + add_test(NAME "Remote.BP${testname}.GetRemote" COMMAND Test.Engine.BP.${testname}.Serial bp5) + set_tests_properties(Remote.BP${testname}.GetRemote PROPERTIES FIXTURES_REQUIRED Server ENVIRONMENT "DoRemote=1") + endmacro() + + add_test(NAME remoteServerSetup COMMAND remote_server -background) + set_tests_properties(remoteServerSetup PROPERTIES FIXTURES_SETUP Server) + + add_test(NAME remoteServerCleanup COMMAND remote_server -kill_server) + set_tests_properties(remoteServerCleanup PROPERTIES FIXTURES_CLEANUP Server) + + #add remote tests below this line + add_remote_tests_helper(WriteReadADIOS2stdio) + add_remote_tests_helper(WriteMemorySelectionRead) +endif() + if(ADIOS2_HAVE_MPI) list(APPEND BP5LargeMeta "Engine.BP.BPLargeMetadata.BPWrite1D_LargeMetadata.BP5.MPI" "Engine.BP.BPLargeMetadata.ManyLongStrings.BP5.MPI") endif() From 107164d6fba5db462e739247380d6154448ca295 Mon Sep 17 00:00:00 2001 From: Greg Eisenhauer Date: Fri, 13 Oct 2023 23:13:05 -0400 Subject: [PATCH 151/183] Tweak Remote class and test multi-threaded file remote access (#3834) * Tweak Remote class and test multi-threaded file remote access * rework * Bad clang-format * New formulation --- source/adios2/toolkit/remote/Remote.cpp | 22 +++++++++++-------- source/adios2/toolkit/remote/Remote.h | 28 ++++++++++--------------- testing/adios2/engine/bp/CMakeLists.txt | 19 +++++++++++------ 3 files changed, 37 insertions(+), 32 deletions(-) diff --git a/source/adios2/toolkit/remote/Remote.cpp b/source/adios2/toolkit/remote/Remote.cpp index 0fe3199420..3a397b05a9 100644 --- a/source/adios2/toolkit/remote/Remote.cpp +++ b/source/adios2/toolkit/remote/Remote.cpp @@ -50,16 +50,20 @@ void ReadResponseHandler(CManager cm, CMConnection conn, void *vevent, void *cli return; }; +CManagerSingleton &CManagerSingleton::Instance(RemoteCommon::Remote_evpath_state &ev_state) +{ + std::mutex mtx; + const std::lock_guard lock(mtx); + static CManagerSingleton instance; + ev_state = instance.internalEvState; + return instance; +} + void Remote::InitCMData() { - std::lock_guard lockGuard(m_CMInitMutex); - bool first = true; - auto CM = CManagerSingleton::Instance(first); - ev_state.cm = CM->m_cm; - RegisterFormats(ev_state); - if (first) - { - CMfork_comm_thread(ev_state.cm); + (void)CManagerSingleton::Instance(ev_state); + static std::once_flag flag; + std::call_once(flag, [&]() { CMregister_handler(ev_state.OpenResponseFormat, (CMHandlerFunc)OpenResponseHandler, &ev_state); CMregister_handler(ev_state.ReadResponseFormat, (CMHandlerFunc)ReadResponseHandler, @@ -68,7 +72,7 @@ void Remote::InitCMData() (CMHandlerFunc)OpenSimpleResponseHandler, &ev_state); CMregister_handler(ev_state.ReadResponseFormat, (CMHandlerFunc)ReadResponseHandler, &ev_state); - } + }); } void Remote::Open(const std::string hostname, const int32_t port, const std::string filename, diff --git a/source/adios2/toolkit/remote/Remote.h b/source/adios2/toolkit/remote/Remote.h index 75824cdc31..608d35f637 100644 --- a/source/adios2/toolkit/remote/Remote.h +++ b/source/adios2/toolkit/remote/Remote.h @@ -63,32 +63,26 @@ class Remote bool m_Active = false; }; +#ifdef ADIOS2_HAVE_SST class CManagerSingleton { public: -#ifdef ADIOS2_HAVE_SST + static CManagerSingleton &Instance(RemoteCommon::Remote_evpath_state &ev_state); + +private: CManager m_cm = NULL; -#endif - static CManagerSingleton *Instance(bool &first) + RemoteCommon::Remote_evpath_state internalEvState; + CManagerSingleton() { - static CManagerSingleton *ptr = new CManagerSingleton(); - static bool internal_first = true; - first = internal_first; - internal_first = false; - return ptr; + m_cm = CManager_create(); + internalEvState.cm = m_cm; + RegisterFormats(internalEvState); + CMfork_comm_thread(internalEvState.cm); } -protected: -#ifdef ADIOS2_HAVE_SST - CManagerSingleton() { m_cm = CManager_create(); } - ~CManagerSingleton() { CManager_close(m_cm); } -#else - CManagerSingleton() {} - - ~CManagerSingleton() {} -#endif }; +#endif } // end namespace adios2 diff --git a/testing/adios2/engine/bp/CMakeLists.txt b/testing/adios2/engine/bp/CMakeLists.txt index 10f724cc1b..03479c7edc 100644 --- a/testing/adios2/engine/bp/CMakeLists.txt +++ b/testing/adios2/engine/bp/CMakeLists.txt @@ -107,22 +107,29 @@ bp_gtest_add_tests_helper(LargeMetadata MPI_ALLOW) set(BP5LargeMeta "Engine.BP.BPLargeMetadata.BPWrite1D_LargeMetadata.BP5.Serial") if ((NOT WIN32) AND ADIOS2_HAVE_SST) -# prototype for remote server testing -# (we don't really use SST here, just EVPath, but ADIOS2_HAVE_SST is the most relevant conditional) - macro(add_remote_tests_helper testname) + # prototype for remote server testing + # (we don't really use SST here, just EVPath, but ADIOS2_HAVE_SST is the most relevant conditional) + + macro(add_get_remote_tests_helper testname) add_test(NAME "Remote.BP${testname}.GetRemote" COMMAND Test.Engine.BP.${testname}.Serial bp5) set_tests_properties(Remote.BP${testname}.GetRemote PROPERTIES FIXTURES_REQUIRED Server ENVIRONMENT "DoRemote=1") endmacro() + macro(add_file_remote_tests_helper testname) + add_test(NAME "Remote.BP${testname}.FileRemote" COMMAND Test.Engine.BP.${testname}.Serial bp5) + set_tests_properties(Remote.BP${testname}.FileRemote PROPERTIES FIXTURES_REQUIRED Server ENVIRONMENT "DoFileRemote=1") + endmacro() + add_test(NAME remoteServerSetup COMMAND remote_server -background) set_tests_properties(remoteServerSetup PROPERTIES FIXTURES_SETUP Server) add_test(NAME remoteServerCleanup COMMAND remote_server -kill_server) set_tests_properties(remoteServerCleanup PROPERTIES FIXTURES_CLEANUP Server) - #add remote tests below this line - add_remote_tests_helper(WriteReadADIOS2stdio) - add_remote_tests_helper(WriteMemorySelectionRead) + ##### add remote tests below this line + add_get_remote_tests_helper(WriteReadADIOS2stdio) + add_get_remote_tests_helper(WriteMemorySelectionRead) + add_file_remote_tests_helper(WriteMemorySelectionRead) endif() if(ADIOS2_HAVE_MPI) From ac071858422b1e848dab6c8dc5f3cd4e1fa1fab8 Mon Sep 17 00:00:00 2001 From: Vicente Bolea Date: Tue, 17 Oct 2023 13:56:40 -0400 Subject: [PATCH 152/183] MPI: add timeout for conf test for MPI_DP (#3848) --- cmake/DetectOptions.cmake | 19 +++++++++++++++---- 1 file changed, 15 insertions(+), 4 deletions(-) diff --git a/cmake/DetectOptions.cmake b/cmake/DetectOptions.cmake index c8f277567c..409db1b552 100644 --- a/cmake/DetectOptions.cmake +++ b/cmake/DetectOptions.cmake @@ -445,9 +445,11 @@ if(ADIOS2_USE_SST AND NOT WIN32) endif() endif() if(ADIOS2_HAVE_MPI) - set(CMAKE_REQUIRED_LIBRARIES MPI::MPI_C) - include(CheckCSourceRuns) - check_c_source_runs([=[ + set(CMAKE_REQUIRED_LIBRARIES "MPI::MPI_C;Threads::Threads") + include(CheckCXXSourceRuns) + check_cxx_source_runs([=[ + #include + #include #include #include @@ -457,9 +459,18 @@ if(ADIOS2_USE_SST AND NOT WIN32) int main() { + // Timeout after 5 second + auto task = std::async(std::launch::async, []() { + std::this_thread::sleep_for(std::chrono::seconds(5)); + exit(EXIT_FAILURE); + }); + + char* port_name = new char[MPI_MAX_PORT_NAME]; MPI_Init_thread(NULL, NULL, MPI_THREAD_MULTIPLE, NULL); - MPI_Open_port(MPI_INFO_NULL, malloc(sizeof(char) * MPI_MAX_PORT_NAME)); + MPI_Open_port(MPI_INFO_NULL, port_name); + MPI_Close_port(port_name); MPI_Finalize(); + exit(EXIT_SUCCESS); }]=] ADIOS2_HAVE_MPI_CLIENT_SERVER) unset(CMAKE_REQUIRED_LIBRARIES) From d0fcf101823c9693dcfc3c5b665693b8acf1013e Mon Sep 17 00:00:00 2001 From: Vicente Bolea Date: Tue, 17 Oct 2023 15:38:56 -0400 Subject: [PATCH 153/183] cmake: update minimum cmake to 3.12 (#3849) --- cmake/adios2-config-install.cmake.in | 2 +- cmake/install/post/adios2-config-dummy/CMakeLists.txt | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/cmake/adios2-config-install.cmake.in b/cmake/adios2-config-install.cmake.in index 86d3ef64ef..a0d6cf1def 100644 --- a/cmake/adios2-config-install.cmake.in +++ b/cmake/adios2-config-install.cmake.in @@ -1,4 +1,4 @@ -cmake_minimum_required(VERSION 3.1) +cmake_minimum_required(VERSION 3.12) set(_ADIOS2_CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH}) list(INSERT CMAKE_MODULE_PATH 0 "${CMAKE_CURRENT_LIST_DIR}") diff --git a/cmake/install/post/adios2-config-dummy/CMakeLists.txt b/cmake/install/post/adios2-config-dummy/CMakeLists.txt index 7b31c5c911..83db648edd 100644 --- a/cmake/install/post/adios2-config-dummy/CMakeLists.txt +++ b/cmake/install/post/adios2-config-dummy/CMakeLists.txt @@ -1,4 +1,4 @@ -cmake_minimum_required(VERSION 3.0) +cmake_minimum_required(VERSION 3.12) project(adios2-config-dummy C CXX) From 975e8deba0f5b53f0dc6d8e37d0d1aa36bd1a858 Mon Sep 17 00:00:00 2001 From: Vicente Bolea Date: Tue, 17 Oct 2023 15:53:52 -0400 Subject: [PATCH 154/183] MPI_DP: do not call MPI_Init (#3847) --- source/adios2/toolkit/sst/dp/mpi_dp.c | 66 ++++++++------------------- 1 file changed, 20 insertions(+), 46 deletions(-) diff --git a/source/adios2/toolkit/sst/dp/mpi_dp.c b/source/adios2/toolkit/sst/dp/mpi_dp.c index 612985c146..d82fc189b4 100644 --- a/source/adios2/toolkit/sst/dp/mpi_dp.c +++ b/source/adios2/toolkit/sst/dp/mpi_dp.c @@ -42,8 +42,6 @@ #define QUOTE(name) #name #define MACRO_TO_STR(name) QUOTE(name) -static pthread_once_t OnceMpiInitializer = PTHREAD_ONCE_INIT; - /*****Stream Basic Structures ***********************************************/ typedef struct _MpiReaderContactInfo @@ -235,40 +233,6 @@ static void MpiReadReplyHandler(CManager cm, CMConnection conn, void *msg_v, voi static void MpiReadRequestHandler(CManager cm, CMConnection conn, void *msg_v, void *client_Data, attr_list attrs); -/** - * Initialize MPI in the mode that it is required for MPI_DP to work. - * - * It can be called multiple times. - */ -static void MpiInitialize() -{ - int IsInitialized = 0; - int provided; - - MPI_Initialized(&IsInitialized); - if (!IsInitialized) - { - MPI_Init_thread(NULL, NULL, MPI_THREAD_MULTIPLE, &provided); - } - else - { - MPI_Query_thread(&provided); - } - - if (provided != MPI_THREAD_MULTIPLE) - { - int rank; - MPI_Comm_rank(MPI_COMM_WORLD, &rank); - if (!rank) - { - fprintf(stderr, - "MPI init without MPI_THREAD_MULTIPLE (Externally " - "initialized:%s)\n", - IsInitialized ? "true" : "false"); - } - } -} - /*****Public accessible functions********************************************/ /** @@ -286,8 +250,6 @@ static DP_RS_Stream MpiInitReader(CP_Services Svcs, void *CP_Stream, void **Read struct _SstParams *Params, attr_list WriterContact, SstStats Stats) { - pthread_once(&OnceMpiInitializer, MpiInitialize); - MpiStreamRD Stream = calloc(sizeof(struct _MpiStreamRD), 1); CManager cm = Svcs->getCManager(CP_Stream); SMPI_Comm comm = Svcs->getMPIComm(CP_Stream); @@ -327,8 +289,6 @@ static DP_RS_Stream MpiInitReader(CP_Services Svcs, void *CP_Stream, void **Read static DP_WS_Stream MpiInitWriter(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params, attr_list DPAttrs, SstStats Stats) { - pthread_once(&OnceMpiInitializer, MpiInitialize); - MpiStreamWR Stream = calloc(sizeof(struct _MpiStreamWR), 1); CManager cm = Svcs->getCManager(CP_Stream); SMPI_Comm comm = Svcs->getMPIComm(CP_Stream); @@ -798,16 +758,30 @@ static void MpiReleaseTimeStep(CP_Services Svcs, DP_WS_Stream Stream_v, long Tim */ static int MpiGetPriority(CP_Services Svcs, void *CP_Stream, struct _SstParams *Params) { -#if defined(MPICH) - // Only enabled when MPI_THREAD_MULTIPLE and using MPICH + int IsInitialized = 0; int provided = 0; - pthread_once(&OnceMpiInitializer, MpiInitialize); - MPI_Query_thread(&provided); - if (provided == MPI_THREAD_MULTIPLE) + int IsMPICH = 0; +#if defined(MPICH) + IsMPICH = 1; + + MPI_Initialized(&IsInitialized); + if (IsInitialized) { - return 100; + MPI_Query_thread(&provided); + // Only enabled when MPI_THREAD_MULTIPLE and using MPICH + if (provided == MPI_THREAD_MULTIPLE) + { + return 100; + } } #endif + + Svcs->verbose(CP_Stream, DPTraceVerbose, + "MPI DP disabled since the following predicate is false: " + "(MPICH=%s AND MPI_initialized=%s AND MPI_THREAD_MULTIPLE=%s)", + IsMPICH ? "true" : "false", IsInitialized ? "true" : "false", + provided == MPI_THREAD_MULTIPLE ? "true" : "false"); + return -100; } From 897ca42ccbe0cd21718b5f9f046d21326d4d7ed5 Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Thu, 14 Sep 2023 14:52:33 -0400 Subject: [PATCH 155/183] Improve existing examples 1) Make all examples individually compilable 2) Make examples' executable names be consistent 3) Move certain examples in the right folders 4) Rename certain examples for clarity 5) Make all examples installable 6) Fix Python formatting using black 7) Add licence documentation wherever it's missing --- CMakeLists.txt | 2 +- examples/CMakeLists.txt | 22 +--- examples/basics/CMakeLists.txt | 5 +- examples/basics/globalArray/CMakeLists.txt | 12 --- examples/basics/globalArrayND/CMakeLists.txt | 31 ++++++ .../globalArrayNDWrite.cpp} | 0 examples/basics/joinedArray/CMakeLists.txt | 27 ++++- ...edArray_write.cpp => joinedArrayWrite.cpp} | 0 examples/basics/localArray/CMakeLists.txt | 32 ++++-- ...localArray_read.cpp => localArrayRead.cpp} | 0 ...calArray_write.cpp => localArrayWrite.cpp} | 0 examples/basics/queryWorker/CMakeLists.txt | 30 ++++++ .../READ.ME => basics/queryWorker/README.md} | 0 .../queryWorker}/configs/bp4io.xml | 2 +- .../queryWorker}/configs/bp4io_composite.xml | 4 +- .../queryWorker}/configs/q1.json | 0 .../queryWorker}/configs/q2.json | 0 .../queryWorker/queryWorker.cpp} | 38 ------- examples/basics/values/CMakeLists.txt | 28 ++++- .../{values_write.cpp => valuesWrite.cpp} | 0 examples/cuda/CMakeLists.txt | 8 -- examples/fides/01_onecell/CMakeLists.txt | 7 -- examples/fides/01_onecell/README.md | 28 ----- examples/fides/CMakeLists.txt | 6 -- examples/h5subfile/CMakeLists.txt | 10 -- examples/heatTransfer/inline/CMakeLists.txt | 14 --- examples/heatTransfer/read/CMakeLists.txt | 11 -- .../heatTransfer/read_fileonly/CMakeLists.txt | 12 --- .../read_fileonly/heatRead_adios1.cpp | 101 ------------------ examples/heatTransfer/write/CMakeLists.txt | 66 ------------ examples/hello/CMakeLists.txt | 34 +++--- .../hello/bpAttributeWriter/CMakeLists.txt | 28 ++++- ...ributeWriter.cpp => bpAttributeWriter.cpp} | 2 +- ..._nompi.cpp => bpAttributeWriter_nompi.cpp} | 2 +- examples/hello/bpFWriteCRead/CMakeLists.txt | 59 +++++++--- examples/hello/bpFlushWriter/CMakeLists.txt | 27 ++++- ...lloBPFlushWriter.cpp => bpFlushWriter.cpp} | 2 +- ...iter_nompi.cpp => bpFlushWriter_nompi.cpp} | 2 +- examples/hello/bpReader/CMakeLists.txt | 69 ++++++++---- .../{helloBPReader.cpp => bpReader.cpp} | 4 +- ...derHeatMap2D.cpp => bpReaderHeatMap2D.cpp} | 2 +- ...eaderHeatMap2D.py => bpReaderHeatMap2D.py} | 17 +-- ...derHeatMap3D.F90 => bpReaderHeatMap3D.F90} | 4 +- ...derHeatMap3D.cpp => bpReaderHeatMap3D.cpp} | 0 ...oBPReader_nompi.cpp => bpReader_nompi.cpp} | 2 +- examples/hello/bpTimeWriter/CMakeLists.txt | 27 ++++- ...helloBPTimeWriter.cpp => bpTimeWriter.cpp} | 2 +- .../{helloBPTimeWriter.py => bpTimeWriter.py} | 7 +- ...riter_nompi.cpp => bpTimeWriter_nompi.cpp} | 2 +- examples/hello/bpWriteReadCuda/CMakeLists.txt | 25 +++++ .../bpWriteReadCuda/bpWriteReadCuda.cu} | 3 + examples/hello/bpWriter/CMakeLists.txt | 91 +++++++++++----- ...lloBPPutDeferred.cpp => bpPutDeferred.cpp} | 12 +-- .../bpWriter/{helloBPSZ.cpp => bpSZ.cpp} | 2 +- ...helloBPSubStreams.cpp => bpSubStreams.cpp} | 2 +- .../{helloBPWriter.F90 => bpWriter.F90} | 4 +- .../bpWriter/{helloBPWriter.c => bpWriter.c} | 2 +- .../{helloBPWriter.cpp => bpWriter.cpp} | 2 +- .../{helloBPWriter.py => bpWriter.py} | 17 +-- ...lloBPWriter_nompi.py => bpWriter_nompi.py} | 7 +- examples/hello/datamanReader/CMakeLists.txt | 26 ++++- ...lloDataManReader.cpp => dataManReader.cpp} | 2 +- ...helloDataManReader.py => dataManReader.py} | 4 +- examples/hello/datamanWriter/CMakeLists.txt | 26 ++++- ...lloDataManWriter.cpp => dataManWriter.cpp} | 2 +- ...helloDataManWriter.py => dataManWriter.py} | 7 +- .../hello/dataspacesReader/CMakeLists.txt | 33 +++++- ...aSpacesReader.cpp => dataSpacesReader.cpp} | 2 +- .../hello/dataspacesWriter/CMakeLists.txt | 33 +++++- ...aSpacesWriter.cpp => dataSpacesWriter.cpp} | 2 +- examples/hello/hdf5Reader/CMakeLists.txt | 33 +++++- .../{helloHDF5Reader.cpp => hdf5Reader.cpp} | 2 +- ...5Reader_nompi.cpp => hdf5Reader_nompi.cpp} | 2 +- examples/hello/hdf5SubFile/CMakeLists.txt | 30 ++++++ .../hdf5SubFile/hdf5SubFile.cpp} | 2 +- examples/hello/hdf5Writer/CMakeLists.txt | 33 +++++- .../{helloHDF5Writer.cpp => hdf5Writer.cpp} | 2 +- ...5Writer_nompi.cpp => hdf5Writer_nompi.cpp} | 2 +- .../hello/inlineFWriteCppRead/CMakeLists.txt | 43 +++++--- examples/hello/inlineMWE/CMakeLists.txt | 17 +++ examples/{ => hello}/inlineMWE/inlineMWE.cpp | 5 + .../hello/inlineReaderWriter/CMakeLists.txt | 27 ++++- ...eaderWriter.cpp => inlineReaderWriter.cpp} | 2 +- examples/hello/skeleton/CMakeLists.txt | 37 +++++-- ...HelloSkeletonArgs.cpp => SkeletonArgs.cpp} | 9 +- .../{HelloSkeletonArgs.h => SkeletonArgs.h} | 4 +- .../{HelloSkeletonPrint.h => SkeletonPrint.h} | 0 .../skeleton/{hello_bpfile.xml => bpfile.xml} | 2 +- .../{hello_skeleton.xml => skeleton.xml} | 2 +- ...oSkeletonReader.cpp => skeletonReader.cpp} | 11 +- ...oSkeletonWriter.cpp => skeletonWriter.cpp} | 6 +- examples/hello/sstReader/CMakeLists.txt | 35 +++++- .../{helloSstReader.cpp => sstReader.cpp} | 4 +- examples/hello/sstWriter/CMakeLists.txt | 35 +++++- .../{helloSstWriter.cpp => sstWriter.cpp} | 13 +-- .../{helloSstWriter.py => sstWriter.py} | 10 +- examples/inlineMWE/CMakeLists.txt | 7 -- examples/plugins/CMakeLists.txt | 4 +- examples/plugins/engine/CMakeLists.txt | 46 ++++---- ...e_read.cpp => examplePluginEngineRead.cpp} | 2 +- ...write.cpp => examplePluginEngineWrite.cpp} | 2 +- examples/plugins/engine/example_engine.xml | 4 +- examples/plugins/operator/CMakeLists.txt | 30 ++++-- ...read.cpp => examplePluginOperatorRead.cpp} | 2 +- ...ite.cpp => examplePluginOperatorWrite.cpp} | 0 examples/query/CMakeLists.txt | 10 -- examples/simulations/CMakeLists.txt | 3 + .../heatTransfer/CMakeLists.txt | 9 +- .../{ => simulations}/heatTransfer/ReadMe.md | 14 +-- .../heatTransfer/heat_bp3.xml | 4 +- .../heatTransfer/heat_bp3_zfp.xml | 4 +- .../heatTransfer/heat_bp4.xml | 4 +- .../heatTransfer/heat_bp4_zfp.xml | 4 +- .../heatTransfer/heat_dataman.xml | 4 +- .../heatTransfer/heat_dataspaces.xml | 4 +- .../heatTransfer/heat_file.xml | 4 +- .../heatTransfer/heat_hdf5.xml | 4 +- .../heatTransfer/heat_inline.xml | 2 +- .../heatTransfer/heat_nullcore.xml | 4 +- .../heatTransfer/heat_ssc.xml | 4 +- .../heatTransfer/heat_sst_bp.xml | 4 +- .../heatTransfer/heat_sst_bp_rdma.xml | 4 +- .../heatTransfer/heat_sst_ffs.xml | 4 +- .../heatTransfer/heat_sst_ffs_rdma.xml | 4 +- .../heatTransfer/inline/CMakeLists.txt | 34 ++++++ .../heatTransfer/inline/InlineIO.cpp | 0 .../heatTransfer/inline/InlineIO.h | 0 .../heatTransfer/inline/main.cpp | 0 .../heatTransfer/read/CMakeLists.txt | 31 ++++++ .../heatTransfer/read/PrintDataStep.h | 0 .../heatTransfer/read/ReadSettings.cpp | 0 .../heatTransfer/read/ReadSettings.h | 0 .../heatTransfer/read/heatRead.cpp | 0 .../heatTransfer/readFileOnly/CMakeLists.txt | 27 +++++ .../heatTransfer/readFileOnly}/PrintData.h | 0 .../readFileOnly/heatReadFileOnly.cpp} | 9 +- .../heatTransfer/write/CMakeLists.txt | 81 ++++++++++++++ .../heatTransfer/write/HeatTransfer.cpp | 0 .../heatTransfer/write/HeatTransfer.h | 0 .../{ => simulations}/heatTransfer/write/IO.h | 0 .../heatTransfer/write/IO_adios2.cpp | 2 +- .../heatTransfer/write/IO_ascii.cpp | 0 .../heatTransfer/write/IO_h5mixer.cpp | 0 .../heatTransfer/write/IO_hdf5_a.cpp | 2 +- .../heatTransfer/write/IO_ph5.cpp | 0 .../heatTransfer/write/Settings.cpp | 0 .../heatTransfer/write/Settings.h | 0 .../heatTransfer/write/main.cpp | 0 examples/useCases/CMakeLists.txt | 2 +- examples/useCases/fidesOneCell/CMakeLists.txt | 17 +++ examples/useCases/fidesOneCell/ReadMe.md | 37 +++++++ .../fidesOneCell/fidesOneCell.cpp} | 2 +- .../fidesOneCell/fidesOneCell.json} | 0 .../fidesOneCell}/paraview-onecell-step0.png | Bin .../fidesOneCell}/paraview-onecell-step9.png | Bin .../insituGlobalArrays/CMakeLists.txt | 38 +++++-- .../examples/heatTransfer/TestBPFileMx1.cmake | 16 +-- .../heatTransfer/TestBPFileMx1_zfp.cmake | 16 +-- .../examples/heatTransfer/TestBPFileMxM.cmake | 16 +-- .../examples/heatTransfer/TestBPFileMxN.cmake | 16 +-- .../examples/heatTransfer/TestInlineMxM.cmake | 4 +- .../examples/heatTransfer/TestSSCMx1.cmake | 8 +- .../examples/heatTransfer/TestSSCMxM.cmake | 8 +- .../examples/heatTransfer/TestSSCMxN.cmake | 8 +- .../examples/heatTransfer/TestSSTBPMx1.cmake | 8 +- .../examples/heatTransfer/TestSSTBPMxM.cmake | 8 +- .../examples/heatTransfer/TestSSTBPMxN.cmake | 8 +- .../heatTransfer/TestSSTBPRDMAMxN.cmake | 8 +- .../examples/heatTransfer/TestSSTFFSMx1.cmake | 8 +- .../examples/heatTransfer/TestSSTFFSMxM.cmake | 8 +- .../examples/heatTransfer/TestSSTFFSMxN.cmake | 8 +- .../heatTransfer/TestSSTFFSRDMAMxN.cmake | 8 +- .../install/EncryptionOperator/CMakeLists.txt | 4 +- testing/install/EnginePlugin/CMakeLists.txt | 4 +- 174 files changed, 1314 insertions(+), 783 deletions(-) delete mode 100644 examples/basics/globalArray/CMakeLists.txt create mode 100644 examples/basics/globalArrayND/CMakeLists.txt rename examples/basics/{globalArray/globalArray_write.cpp => globalArrayND/globalArrayNDWrite.cpp} (100%) rename examples/basics/joinedArray/{joinedArray_write.cpp => joinedArrayWrite.cpp} (100%) rename examples/basics/localArray/{localArray_read.cpp => localArrayRead.cpp} (100%) rename examples/basics/localArray/{localArray_write.cpp => localArrayWrite.cpp} (100%) create mode 100644 examples/basics/queryWorker/CMakeLists.txt rename examples/{query/READ.ME => basics/queryWorker/README.md} (100%) rename examples/{query => basics/queryWorker}/configs/bp4io.xml (99%) rename examples/{query => basics/queryWorker}/configs/bp4io_composite.xml (98%) rename examples/{query => basics/queryWorker}/configs/q1.json (100%) rename examples/{query => basics/queryWorker}/configs/q2.json (100%) rename examples/{query/test.cpp => basics/queryWorker/queryWorker.cpp} (75%) rename examples/basics/values/{values_write.cpp => valuesWrite.cpp} (100%) delete mode 100644 examples/cuda/CMakeLists.txt delete mode 100644 examples/fides/01_onecell/CMakeLists.txt delete mode 100644 examples/fides/01_onecell/README.md delete mode 100644 examples/fides/CMakeLists.txt delete mode 100644 examples/h5subfile/CMakeLists.txt delete mode 100644 examples/heatTransfer/inline/CMakeLists.txt delete mode 100644 examples/heatTransfer/read/CMakeLists.txt delete mode 100644 examples/heatTransfer/read_fileonly/CMakeLists.txt delete mode 100644 examples/heatTransfer/read_fileonly/heatRead_adios1.cpp delete mode 100644 examples/heatTransfer/write/CMakeLists.txt rename examples/hello/bpAttributeWriter/{helloBPAttributeWriter.cpp => bpAttributeWriter.cpp} (97%) rename examples/hello/bpAttributeWriter/{helloBPAttributeWriter_nompi.cpp => bpAttributeWriter_nompi.cpp} (96%) rename examples/hello/bpFlushWriter/{helloBPFlushWriter.cpp => bpFlushWriter.cpp} (97%) rename examples/hello/bpFlushWriter/{helloBPFlushWriter_nompi.cpp => bpFlushWriter_nompi.cpp} (96%) rename examples/hello/bpReader/{helloBPReader.cpp => bpReader.cpp} (97%) rename examples/hello/bpReader/{helloBPReaderHeatMap2D.cpp => bpReaderHeatMap2D.cpp} (98%) rename examples/hello/bpReader/{helloBPReaderHeatMap2D.py => bpReaderHeatMap2D.py} (75%) rename examples/hello/bpReader/{helloBPReaderHeatMap3D.F90 => bpReaderHeatMap3D.F90} (98%) rename examples/hello/bpReader/{helloBPReaderHeatMap3D.cpp => bpReaderHeatMap3D.cpp} (100%) rename examples/hello/bpReader/{helloBPReader_nompi.cpp => bpReader_nompi.cpp} (97%) rename examples/hello/bpTimeWriter/{helloBPTimeWriter.cpp => bpTimeWriter.cpp} (98%) rename examples/hello/bpTimeWriter/{helloBPTimeWriter.py => bpTimeWriter.py} (87%) rename examples/hello/bpTimeWriter/{helloBPTimeWriter_nompi.cpp => bpTimeWriter_nompi.cpp} (96%) create mode 100644 examples/hello/bpWriteReadCuda/CMakeLists.txt rename examples/{cuda/cudaBPWriteRead.cu => hello/bpWriteReadCuda/bpWriteReadCuda.cu} (96%) rename examples/hello/bpWriter/{helloBPPutDeferred.cpp => bpPutDeferred.cpp} (91%) rename examples/hello/bpWriter/{helloBPSZ.cpp => bpSZ.cpp} (98%) rename examples/hello/bpWriter/{helloBPSubStreams.cpp => bpSubStreams.cpp} (99%) rename examples/hello/bpWriter/{helloBPWriter.F90 => bpWriter.F90} (97%) rename examples/hello/bpWriter/{helloBPWriter.c => bpWriter.c} (97%) rename examples/hello/bpWriter/{helloBPWriter.cpp => bpWriter.cpp} (97%) rename examples/hello/bpWriter/{helloBPWriter.py => bpWriter.py} (73%) rename examples/hello/bpWriter/{helloBPWriter_nompi.py => bpWriter_nompi.py} (72%) rename examples/hello/datamanReader/{helloDataManReader.cpp => dataManReader.cpp} (98%) rename examples/hello/datamanReader/{helloDataManReader.py => dataManReader.py} (92%) rename examples/hello/datamanWriter/{helloDataManWriter.cpp => dataManWriter.cpp} (98%) rename examples/hello/datamanWriter/{helloDataManWriter.py => dataManWriter.py} (92%) rename examples/hello/dataspacesReader/{helloDataSpacesReader.cpp => dataSpacesReader.cpp} (98%) rename examples/hello/dataspacesWriter/{helloDataSpacesWriter.cpp => dataSpacesWriter.cpp} (98%) rename examples/hello/hdf5Reader/{helloHDF5Reader.cpp => hdf5Reader.cpp} (99%) rename examples/hello/hdf5Reader/{helloHDF5Reader_nompi.cpp => hdf5Reader_nompi.cpp} (99%) create mode 100644 examples/hello/hdf5SubFile/CMakeLists.txt rename examples/{h5subfile/h5_subfile.cpp => hello/hdf5SubFile/hdf5SubFile.cpp} (99%) rename examples/hello/hdf5Writer/{helloHDF5Writer.cpp => hdf5Writer.cpp} (98%) rename examples/hello/hdf5Writer/{helloHDF5Writer_nompi.cpp => hdf5Writer_nompi.cpp} (96%) create mode 100644 examples/hello/inlineMWE/CMakeLists.txt rename examples/{ => hello}/inlineMWE/inlineMWE.cpp (88%) rename examples/hello/inlineReaderWriter/{helloInlineReaderWriter.cpp => inlineReaderWriter.cpp} (98%) rename examples/hello/skeleton/{HelloSkeletonArgs.cpp => SkeletonArgs.cpp} (92%) rename examples/hello/skeleton/{HelloSkeletonArgs.h => SkeletonArgs.h} (93%) rename examples/hello/skeleton/{HelloSkeletonPrint.h => SkeletonPrint.h} (100%) rename examples/hello/skeleton/{hello_bpfile.xml => bpfile.xml} (97%) rename examples/hello/skeleton/{hello_skeleton.xml => skeleton.xml} (96%) rename examples/hello/skeleton/{helloSkeletonReader.cpp => skeletonReader.cpp} (93%) rename examples/hello/skeleton/{helloSkeletonWriter.cpp => skeletonWriter.cpp} (93%) rename examples/hello/sstReader/{helloSstReader.cpp => sstReader.cpp} (97%) rename examples/hello/sstWriter/{helloSstWriter.cpp => sstWriter.cpp} (81%) rename examples/hello/sstWriter/{helloSstWriter.py => sstWriter.py} (72%) delete mode 100644 examples/inlineMWE/CMakeLists.txt rename examples/plugins/engine/{examplePluginEngine_read.cpp => examplePluginEngineRead.cpp} (97%) rename examples/plugins/engine/{examplePluginEngine_write.cpp => examplePluginEngineWrite.cpp} (97%) rename examples/plugins/operator/{examplePluginOperator_read.cpp => examplePluginOperatorRead.cpp} (97%) rename examples/plugins/operator/{examplePluginOperator_write.cpp => examplePluginOperatorWrite.cpp} (100%) delete mode 100644 examples/query/CMakeLists.txt create mode 100644 examples/simulations/CMakeLists.txt rename examples/{ => simulations}/heatTransfer/CMakeLists.txt (75%) rename examples/{ => simulations}/heatTransfer/ReadMe.md (75%) rename examples/{ => simulations}/heatTransfer/heat_bp3.xml (97%) rename examples/{ => simulations}/heatTransfer/heat_bp3_zfp.xml (98%) rename examples/{ => simulations}/heatTransfer/heat_bp4.xml (97%) rename examples/{ => simulations}/heatTransfer/heat_bp4_zfp.xml (98%) rename examples/{ => simulations}/heatTransfer/heat_dataman.xml (97%) rename examples/{ => simulations}/heatTransfer/heat_dataspaces.xml (91%) rename examples/{ => simulations}/heatTransfer/heat_file.xml (97%) rename examples/{ => simulations}/heatTransfer/heat_hdf5.xml (97%) rename examples/{ => simulations}/heatTransfer/heat_inline.xml (96%) rename examples/{ => simulations}/heatTransfer/heat_nullcore.xml (78%) rename examples/{ => simulations}/heatTransfer/heat_ssc.xml (94%) rename examples/{ => simulations}/heatTransfer/heat_sst_bp.xml (91%) rename examples/{ => simulations}/heatTransfer/heat_sst_bp_rdma.xml (92%) rename examples/{ => simulations}/heatTransfer/heat_sst_ffs.xml (91%) rename examples/{ => simulations}/heatTransfer/heat_sst_ffs_rdma.xml (92%) create mode 100644 examples/simulations/heatTransfer/inline/CMakeLists.txt rename examples/{ => simulations}/heatTransfer/inline/InlineIO.cpp (100%) rename examples/{ => simulations}/heatTransfer/inline/InlineIO.h (100%) rename examples/{ => simulations}/heatTransfer/inline/main.cpp (100%) create mode 100644 examples/simulations/heatTransfer/read/CMakeLists.txt rename examples/{ => simulations}/heatTransfer/read/PrintDataStep.h (100%) rename examples/{ => simulations}/heatTransfer/read/ReadSettings.cpp (100%) rename examples/{ => simulations}/heatTransfer/read/ReadSettings.h (100%) rename examples/{ => simulations}/heatTransfer/read/heatRead.cpp (100%) create mode 100644 examples/simulations/heatTransfer/readFileOnly/CMakeLists.txt rename examples/{heatTransfer/read_fileonly => simulations/heatTransfer/readFileOnly}/PrintData.h (100%) rename examples/{heatTransfer/read_fileonly/heatRead_adios2.cpp => simulations/heatTransfer/readFileOnly/heatReadFileOnly.cpp} (96%) create mode 100644 examples/simulations/heatTransfer/write/CMakeLists.txt rename examples/{ => simulations}/heatTransfer/write/HeatTransfer.cpp (100%) rename examples/{ => simulations}/heatTransfer/write/HeatTransfer.h (100%) rename examples/{ => simulations}/heatTransfer/write/IO.h (100%) rename examples/{ => simulations}/heatTransfer/write/IO_adios2.cpp (99%) rename examples/{ => simulations}/heatTransfer/write/IO_ascii.cpp (100%) rename examples/{ => simulations}/heatTransfer/write/IO_h5mixer.cpp (100%) rename examples/{ => simulations}/heatTransfer/write/IO_hdf5_a.cpp (96%) rename examples/{ => simulations}/heatTransfer/write/IO_ph5.cpp (100%) rename examples/{ => simulations}/heatTransfer/write/Settings.cpp (100%) rename examples/{ => simulations}/heatTransfer/write/Settings.h (100%) rename examples/{ => simulations}/heatTransfer/write/main.cpp (100%) create mode 100644 examples/useCases/fidesOneCell/CMakeLists.txt create mode 100644 examples/useCases/fidesOneCell/ReadMe.md rename examples/{fides/01_onecell/fides_onecell.cpp => useCases/fidesOneCell/fidesOneCell.cpp} (97%) rename examples/{fides/01_onecell/fides_onecell.json => useCases/fidesOneCell/fidesOneCell.json} (100%) rename examples/{fides/01_onecell => useCases/fidesOneCell}/paraview-onecell-step0.png (100%) rename examples/{fides/01_onecell => useCases/fidesOneCell}/paraview-onecell-step9.png (100%) diff --git a/CMakeLists.txt b/CMakeLists.txt index d3f223ed14..90122c6507 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -176,7 +176,7 @@ if(ADIOS2_HAVE_CUDA OR ADIOS2_HAVE_Kokkos_CUDA) if(DEFINED Kokkos_CUDA_ARCHITECTURES) set(CMAKE_CUDA_ARCHITECTURES ${Kokkos_CUDA_ARCHITECTURES}) else() - # Mininum common non-deprecated architecture + # Minimum common non-deprecated architecture set(CMAKE_CUDA_ARCHITECTURES 52) endif() endif() diff --git a/examples/CMakeLists.txt b/examples/CMakeLists.txt index 3187dc3f49..316e77723e 100644 --- a/examples/CMakeLists.txt +++ b/examples/CMakeLists.txt @@ -5,24 +5,6 @@ add_subdirectory(basics) add_subdirectory(hello) -add_subdirectory(query) -add_subdirectory(useCases) -add_subdirectory(inlineMWE) add_subdirectory(plugins) -add_subdirectory(fides) - -if(ADIOS2_HAVE_MPI) - add_subdirectory(heatTransfer) -endif() - - -if(ADIOS2_HAVE_CUDA OR ADIOS2_HAVE_Kokkos_CUDA) - add_subdirectory(cuda) -endif() - - -if(ADIOS2_HAVE_MPI AND ADIOS2_HAVE_HDF5) - if(HDF5_VERSION VERSION_GREATER_EQUAL 1.14) - add_subdirectory(h5subfile) - endif() -endif() +add_subdirectory(simulations) +add_subdirectory(useCases) diff --git a/examples/basics/CMakeLists.txt b/examples/basics/CMakeLists.txt index 94fa54cd4c..7e470c02d1 100644 --- a/examples/basics/CMakeLists.txt +++ b/examples/basics/CMakeLists.txt @@ -3,7 +3,10 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_subdirectory(globalArray) +add_subdirectory(globalArrayND) add_subdirectory(joinedArray) add_subdirectory(localArray) +if(ADIOS2_HAVE_DATAMAN) + add_subdirectory(queryWorker) +endif() add_subdirectory(values) diff --git a/examples/basics/globalArray/CMakeLists.txt b/examples/basics/globalArray/CMakeLists.txt deleted file mode 100644 index a145a8939b..0000000000 --- a/examples/basics/globalArray/CMakeLists.txt +++ /dev/null @@ -1,12 +0,0 @@ -#------------------------------------------------------------------------------# -# Distributed under the OSI-approved Apache License, Version 2.0. See -# accompanying file Copyright.txt for details. -#------------------------------------------------------------------------------# - -add_executable(globalArray_write globalArray_write.cpp) -target_link_libraries(globalArray_write adios2::cxx11) - -if(ADIOS2_HAVE_MPI) - add_executable(globalArray_write_mpi globalArray_write.cpp) - target_link_libraries(globalArray_write_mpi adios2::cxx11_mpi MPI::MPI_C) -endif() diff --git a/examples/basics/globalArrayND/CMakeLists.txt b/examples/basics/globalArrayND/CMakeLists.txt new file mode 100644 index 0000000000..f1d131c5fa --- /dev/null +++ b/examples/basics/globalArrayND/CMakeLists.txt @@ -0,0 +1,31 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2BasicsGlobalArrayNDExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +add_executable(adios2_basics_globalArrayNDWrite globalArrayNDWrite.cpp) +target_link_libraries(adios2_basics_globalArrayNDWrite adios2::cxx11) +install(TARGETS adios2_basics_globalArrayNDWrite RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + +if(ADIOS2_HAVE_MPI) + add_executable(adios2_basics_globalArrayNDWrite_mpi globalArrayNDWrite.cpp) + target_link_libraries(adios2_basics_globalArrayNDWrite_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_basics_globalArrayNDWrite_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif() diff --git a/examples/basics/globalArray/globalArray_write.cpp b/examples/basics/globalArrayND/globalArrayNDWrite.cpp similarity index 100% rename from examples/basics/globalArray/globalArray_write.cpp rename to examples/basics/globalArrayND/globalArrayNDWrite.cpp diff --git a/examples/basics/joinedArray/CMakeLists.txt b/examples/basics/joinedArray/CMakeLists.txt index 0ac015c3a1..a342d75293 100644 --- a/examples/basics/joinedArray/CMakeLists.txt +++ b/examples/basics/joinedArray/CMakeLists.txt @@ -3,10 +3,29 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(joinedArray_write joinedArray_write.cpp) -target_link_libraries(joinedArray_write adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2BasicsJoinedArrayExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +add_executable(adios2_basics_joinedArrayWrite joinedArrayWrite.cpp) +target_link_libraries(adios2_basics_joinedArrayWrite adios2::cxx11) +install(TARGETS adios2_basics_joinedArrayWrite RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) if(ADIOS2_HAVE_MPI) - add_executable(joinedArray_write_mpi joinedArray_write.cpp) - target_link_libraries(joinedArray_write_mpi adios2::cxx11_mpi MPI::MPI_C) + add_executable(adios2_basics_joinedArrayWrite_mpi joinedArrayWrite.cpp) + target_link_libraries(adios2_basics_joinedArrayWrite_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_basics_joinedArrayWrite_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() diff --git a/examples/basics/joinedArray/joinedArray_write.cpp b/examples/basics/joinedArray/joinedArrayWrite.cpp similarity index 100% rename from examples/basics/joinedArray/joinedArray_write.cpp rename to examples/basics/joinedArray/joinedArrayWrite.cpp diff --git a/examples/basics/localArray/CMakeLists.txt b/examples/basics/localArray/CMakeLists.txt index 1d304a647e..a43a61550f 100644 --- a/examples/basics/localArray/CMakeLists.txt +++ b/examples/basics/localArray/CMakeLists.txt @@ -3,13 +3,33 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(localArray_write localArray_write.cpp) -target_link_libraries(localArray_write adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2BasicsLocalArrayExample) -add_executable(localArray_read localArray_read.cpp) -target_link_libraries(localArray_read adios2::cxx11) +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +add_executable(adios2_basics_localArrayWrite localArrayWrite.cpp) +target_link_libraries(adios2_basics_localArrayWrite adios2::cxx11) +install(TARGETS adios2_basics_localArrayWrite RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + +add_executable(adios2_basics_localArrayRead localArrayRead.cpp) +target_link_libraries(adios2_basics_localArrayRead adios2::cxx11) +install(TARGETS adios2_basics_localArrayRead RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) if(ADIOS2_HAVE_MPI) - add_executable(localArray_write_mpi localArray_write.cpp) - target_link_libraries(localArray_write_mpi adios2::cxx11_mpi MPI::MPI_C) + add_executable(adios2_basics_localArrayWrite_mpi localArrayWrite.cpp) + target_link_libraries(adios2_basics_localArrayWrite_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_basics_localArrayWrite_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() diff --git a/examples/basics/localArray/localArray_read.cpp b/examples/basics/localArray/localArrayRead.cpp similarity index 100% rename from examples/basics/localArray/localArray_read.cpp rename to examples/basics/localArray/localArrayRead.cpp diff --git a/examples/basics/localArray/localArray_write.cpp b/examples/basics/localArray/localArrayWrite.cpp similarity index 100% rename from examples/basics/localArray/localArray_write.cpp rename to examples/basics/localArray/localArrayWrite.cpp diff --git a/examples/basics/queryWorker/CMakeLists.txt b/examples/basics/queryWorker/CMakeLists.txt new file mode 100644 index 0000000000..839dd19bf2 --- /dev/null +++ b/examples/basics/queryWorker/CMakeLists.txt @@ -0,0 +1,30 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2BasicsQueryWorkerExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ZeroMQ 4.1 QUIET) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_MPI AND ADIOS2_HAVE_DataMan) + add_executable(adios2_basics_queryWorker queryWorker.cpp) + target_link_libraries(adios2_basics_queryWorker adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_basics_queryWorker RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif() + diff --git a/examples/query/READ.ME b/examples/basics/queryWorker/README.md similarity index 100% rename from examples/query/READ.ME rename to examples/basics/queryWorker/README.md diff --git a/examples/query/configs/bp4io.xml b/examples/basics/queryWorker/configs/bp4io.xml similarity index 99% rename from examples/query/configs/bp4io.xml rename to examples/basics/queryWorker/configs/bp4io.xml index 65245c97e6..d921181b65 100644 --- a/examples/query/configs/bp4io.xml +++ b/examples/basics/queryWorker/configs/bp4io.xml @@ -1,6 +1,6 @@ diff --git a/examples/query/configs/bp4io_composite.xml b/examples/basics/queryWorker/configs/bp4io_composite.xml similarity index 98% rename from examples/query/configs/bp4io_composite.xml rename to examples/basics/queryWorker/configs/bp4io_composite.xml index 4e6136b4e4..412f883bcd 100644 --- a/examples/query/configs/bp4io_composite.xml +++ b/examples/basics/queryWorker/configs/bp4io_composite.xml @@ -1,7 +1,7 @@ diff --git a/examples/query/configs/q1.json b/examples/basics/queryWorker/configs/q1.json similarity index 100% rename from examples/query/configs/q1.json rename to examples/basics/queryWorker/configs/q1.json diff --git a/examples/query/configs/q2.json b/examples/basics/queryWorker/configs/q2.json similarity index 100% rename from examples/query/configs/q2.json rename to examples/basics/queryWorker/configs/q2.json diff --git a/examples/query/test.cpp b/examples/basics/queryWorker/queryWorker.cpp similarity index 75% rename from examples/query/test.cpp rename to examples/basics/queryWorker/queryWorker.cpp index b97a2d7714..2f172a18f0 100644 --- a/examples/query/test.cpp +++ b/examples/basics/queryWorker/queryWorker.cpp @@ -99,41 +99,3 @@ int main(int argc, char *argv[]) return 0; } - -bool testMe(std::string &queryConfigFile, std::string const &doubleVarName, MPI_Comm comm) -{ - adios2::ADIOS ad(queryConfigFile, comm); - std::string dataFileName = "test.file"; - - // adios2::query::Worker w(queryConfigFile, comm); - - // w.SetSource(inIO, reader); - - { - // the config file should have info on idx method to use - - /* - // if wanting to build customized minmax idx - // instead of using the existing block stats or bp4 minmax arrays - bool overwrite = false; - size_t recommendedSize = 20000; - - if (!w.PrepareIdx(overwrite, recommendedSize, doubleVarName)) - return false; - */ - } - - adios2::IO inIO = ad.DeclareIO("query"); - adios2::Engine reader = inIO.Open(dataFileName, adios2::Mode::Read, comm); - - // to be continued - if (!reader) - return false; - // std::vector dataOutput; - // std::vector coordinateOutput; - - return true; -} - -/* - */ diff --git a/examples/basics/values/CMakeLists.txt b/examples/basics/values/CMakeLists.txt index f36b4c745a..799c72cc54 100644 --- a/examples/basics/values/CMakeLists.txt +++ b/examples/basics/values/CMakeLists.txt @@ -3,10 +3,30 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(values_write values_write.cpp) -target_link_libraries(values_write adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2BasicsValuesExample) + +if(NOT TARGET adios2_core) + set(_components C) + + find_package(MPI COMPONENTS ${_components}) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + list(APPEND _components CXX) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +add_executable(adios2_basics_valuesWrite valuesWrite.cpp) +target_link_libraries(adios2_basics_valuesWrite adios2::cxx11) +install(TARGETS adios2_basics_valuesWrite RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) if(ADIOS2_HAVE_MPI) - add_executable(values_write_mpi values_write.cpp) - target_link_libraries(values_write_mpi adios2::cxx11_mpi MPI::MPI_C) + add_executable(adios2_basics_valuesWrite_mpi valuesWrite.cpp) + target_link_libraries(adios2_basics_valuesWrite_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_basics_valuesWrite_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() diff --git a/examples/basics/values/values_write.cpp b/examples/basics/values/valuesWrite.cpp similarity index 100% rename from examples/basics/values/values_write.cpp rename to examples/basics/values/valuesWrite.cpp diff --git a/examples/cuda/CMakeLists.txt b/examples/cuda/CMakeLists.txt deleted file mode 100644 index 6a613392f4..0000000000 --- a/examples/cuda/CMakeLists.txt +++ /dev/null @@ -1,8 +0,0 @@ -#------------------------------------------------------------------------------# -# Distributed under the OSI-approved Apache License, Version 2.0. See -# accompanying file Copyright.txt for details. -#------------------------------------------------------------------------------# - -add_executable(CudaBPWriteRead_cuda cudaBPWriteRead.cu) -target_link_libraries(CudaBPWriteRead_cuda PUBLIC adios2::cxx11 CUDA::cudart) -set_target_properties(CudaBPWriteRead_cuda PROPERTIES CUDA_SEPARABLE_COMPILATION ON) diff --git a/examples/fides/01_onecell/CMakeLists.txt b/examples/fides/01_onecell/CMakeLists.txt deleted file mode 100644 index e553b37ccc..0000000000 --- a/examples/fides/01_onecell/CMakeLists.txt +++ /dev/null @@ -1,7 +0,0 @@ -#------------------------------------------------------------------------------# -# Distributed under the OSI-approved Apache License, Version 2.0. See -# accompanying file Copyright.txt for details. -#------------------------------------------------------------------------------# - -add_executable(fides_onecell fides_onecell.cpp) -target_link_libraries(fides_onecell adios2::cxx11) diff --git a/examples/fides/01_onecell/README.md b/examples/fides/01_onecell/README.md deleted file mode 100644 index d55174b571..0000000000 --- a/examples/fides/01_onecell/README.md +++ /dev/null @@ -1,28 +0,0 @@ -Single cell example for visualization with Fides schema in ParaView -------------------------------------------------------------------- - -This example writes 8 points in 3D space, the corners of a box, and then defines a single hexagon cell of those eight points. -The coordinates of the points are stored in three 1D arrays, separating the X-Y-Z coordinates. - -The cell is the enumeration of the points connected in the order of a hexagon prescribed by VTK, see -Figure 19-20 in the VTK User Guide, type VTK_HEXAHEDRON in page 480 (page 494 in the PDF). -https://vtk.org/wp-content/uploads/2021/08/VTKUsersGuide.pdf - -The visualization schema is described in the fides-onecell.json file, according to https://fides.readthedocs.io/en/latest/schema/schema.html - -We compose the coordinate system as a composite of the three 1D arrays for X, Y and Z coordinates. This is just an enumeration of the N points in space (N = size of X = size of Y = size of Z) , in contrast to other examples where X, Y, Z is combined to specify a structured grid (number of points = size of X * size of Y * size of Z). - -In ParaView, one opens the fides-onecell.json file and adds an property "source" with the value of the full path of the onecell.bp. See left-middle Properties box in the ParaView window in the image paraview-onecell-step0.png. Then hit Apply button and a gray box should appear (the single cell visualized). which can be rotated on screen. Then one must color the box with the data ("pointdata") to get the pictures shown in the included images. - -Note that the dataset over the points is called "DataOnPoints" in the onecell.bp file, but it is called "pointdata" in the Fides schema to demonstrate which name is which (ParaView presents pointdata to the user while reading the DataOnPoints array from the file). - -First step of onecell.bp in ParaView: - -paraview-onecell-step0.png - -Last step of onecell.bp in ParaView: - -paraview-onecell-step9.png - diff --git a/examples/fides/CMakeLists.txt b/examples/fides/CMakeLists.txt deleted file mode 100644 index 98d3e0e647..0000000000 --- a/examples/fides/CMakeLists.txt +++ /dev/null @@ -1,6 +0,0 @@ -#------------------------------------------------------------------------------# -# Distributed under the OSI-approved Apache License, Version 2.0. See -# accompanying file Copyright.txt for details. -#------------------------------------------------------------------------------# - -add_subdirectory(01_onecell) diff --git a/examples/h5subfile/CMakeLists.txt b/examples/h5subfile/CMakeLists.txt deleted file mode 100644 index 0d94ae241b..0000000000 --- a/examples/h5subfile/CMakeLists.txt +++ /dev/null @@ -1,10 +0,0 @@ -#------------------------------------------------------------------------------# -# Distributed under the OSI-approved Apache License, Version 2.0. See -# accompanying file Copyright.txt for details. -#------------------------------------------------------------------------------# - -if(ADIOS2_HAVE_MPI) - add_executable(H5EngineSubfileTest h5_subfile.cpp) - target_link_libraries(H5EngineSubfileTest adios2::cxx11_mpi MPI::MPI_C) -endif() - diff --git a/examples/heatTransfer/inline/CMakeLists.txt b/examples/heatTransfer/inline/CMakeLists.txt deleted file mode 100644 index 54fd8de038..0000000000 --- a/examples/heatTransfer/inline/CMakeLists.txt +++ /dev/null @@ -1,14 +0,0 @@ -#------------------------------------------------------------------------------# -# Distributed under the OSI-approved Apache License, Version 2.0. See -# accompanying file Copyright.txt for details. -#------------------------------------------------------------------------------# - -add_executable(heatTransfer_inline_adios2 - main.cpp - InlineIO.cpp - ../write/HeatTransfer.cpp - ../write/Settings.cpp -) -target_link_libraries(heatTransfer_inline_adios2 - adios2::cxx11_mpi MPI::MPI_C ${CMAKE_THREAD_LIBS_INIT} -) diff --git a/examples/heatTransfer/read/CMakeLists.txt b/examples/heatTransfer/read/CMakeLists.txt deleted file mode 100644 index dd1adbe0cb..0000000000 --- a/examples/heatTransfer/read/CMakeLists.txt +++ /dev/null @@ -1,11 +0,0 @@ -#------------------------------------------------------------------------------# -# Distributed under the OSI-approved Apache License, Version 2.0. See -# accompanying file Copyright.txt for details. -#------------------------------------------------------------------------------# - -add_executable(heatTransfer_read - heatRead.cpp - PrintDataStep.h - ReadSettings.cpp -) -target_link_libraries(heatTransfer_read adios2::cxx11_mpi MPI::MPI_C) diff --git a/examples/heatTransfer/read_fileonly/CMakeLists.txt b/examples/heatTransfer/read_fileonly/CMakeLists.txt deleted file mode 100644 index d0ab4b830b..0000000000 --- a/examples/heatTransfer/read_fileonly/CMakeLists.txt +++ /dev/null @@ -1,12 +0,0 @@ -#------------------------------------------------------------------------------# -# Distributed under the OSI-approved Apache License, Version 2.0. See -# accompanying file Copyright.txt for details. -#------------------------------------------------------------------------------# - -add_executable(heatTransfer_read_fileonly_adios2 heatRead_adios2.cpp PrintData.h) -target_link_libraries(heatTransfer_read_fileonly_adios2 adios2::cxx11_mpi MPI::MPI_C) - -#if(ADIOS2_HAVE_HDF5) - #add_executable(heatTransfer_read_fileonly_h5_mpi heatRead_h5.cpp PrintData.h) - #target_link_libraries(heatTransfer_read_fileonly_h5_mpi adios2::cxx11_mpi MPI::MPI_C) -#endif() diff --git a/examples/heatTransfer/read_fileonly/heatRead_adios1.cpp b/examples/heatTransfer/read_fileonly/heatRead_adios1.cpp deleted file mode 100644 index c727a9e825..0000000000 --- a/examples/heatTransfer/read_fileonly/heatRead_adios1.cpp +++ /dev/null @@ -1,101 +0,0 @@ -#include - -#include -#include -#include -#include -#include -#include - -#include -#include - -#include "PrintData.h" - -int main(int argc, char *argv[]) -{ - MPI_Init(&argc, &argv); - - if (argc < 2) - { - std::cout << "Not enough arguments: need an input file\n"; - return 1; - } - const char *inputfile = argv[1]; - - /* World comm spans all applications started with the same aprun command - on a Cray XK6. So we have to split and create the local - 'world' communicator for the reader only. - In normal start-up, the communicator will just equal the MPI_COMM_WORLD. - */ - - int wrank, wnproc; - MPI_Comm_rank(MPI_COMM_WORLD, &wrank); - MPI_Comm_size(MPI_COMM_WORLD, &wnproc); - - const unsigned int color = 2; - MPI_Comm mpiReaderComm; - MPI_Comm_split(MPI_COMM_WORLD, color, wrank, &mpiReaderComm); - - int rank, nproc; - MPI_Comm_rank(mpiReaderComm, &rank); - MPI_Comm_size(mpiReaderComm, &nproc); - - adios_read_init_method(ADIOS_READ_METHOD_BP, mpiReaderComm, "verbose=3"); - - ADIOS_FILE *f; - f = adios_read_open_file(inputfile, ADIOS_READ_METHOD_BP, mpiReaderComm); - if (f == NULL) - { - std::cout << adios_errmsg() << std::endl; - return -1; - } - - ADIOS_VARINFO *vgndx = adios_inq_var(f, "gndx"); - ADIOS_VARINFO *vgndy = adios_inq_var(f, "gndy"); - - unsigned int gndx = *(unsigned int *)vgndx->value; - unsigned int gndy = *(unsigned int *)vgndy->value; - - if (rank == 0) - { - std::cout << "gndx = " << gndx << std::endl; - std::cout << "gndy = " << gndy << std::endl; - } - adios_free_varinfo(vgndx); - adios_free_varinfo(vgndy); - - // 1D decomposition of the columns, which is inefficient for reading! - uint64_t readsize[2] = {gndx, gndy / nproc}; - uint64_t offset[2] = {0LL, rank * readsize[1]}; - if (rank == nproc - 1) - { - // last process should read all the rest of columns - readsize[1] = gndy - readsize[1] * (nproc - 1); - } - - std::cout << "rank " << rank << " reads " << readsize[1] << " columns from offset " << offset[1] - << std::endl; - - ADIOS_VARINFO *vT = adios_inq_var(f, "T"); - - double *T = new double[vT->nsteps * readsize[0] * readsize[1]]; - - // Create a 2D selection for the subset - ADIOS_SELECTION *sel = adios_selection_boundingbox(2, offset, readsize); - - // Arrays are read by scheduling one or more of them - // and performing the reads at once - adios_schedule_read(f, sel, "T", 0, vT->nsteps, T); - adios_perform_reads(f, 1); - - printData(T, readsize, offset, rank, vT->nsteps); - adios_read_close(f); - adios_free_varinfo(vT); - delete[] T; - // Terminate - adios_selection_delete(sel); - adios_read_finalize_method(ADIOS_READ_METHOD_BP); - MPI_Finalize(); - return 0; -} diff --git a/examples/heatTransfer/write/CMakeLists.txt b/examples/heatTransfer/write/CMakeLists.txt deleted file mode 100644 index 268b05fe28..0000000000 --- a/examples/heatTransfer/write/CMakeLists.txt +++ /dev/null @@ -1,66 +0,0 @@ -#------------------------------------------------------------------------------# -# Distributed under the OSI-approved Apache License, Version 2.0. See -# accompanying file Copyright.txt for details. -#------------------------------------------------------------------------------# - -add_executable(heatTransfer_write_adios2 - main.cpp - HeatTransfer.cpp - Settings.cpp - IO_adios2.cpp -) -target_link_libraries(heatTransfer_write_adios2 - adios2::cxx11_mpi MPI::MPI_C ${CMAKE_THREAD_LIBS_INIT} -) - -add_executable(heatTransfer_write_ascii - main.cpp - HeatTransfer.cpp - Settings.cpp - IO_ascii.cpp -) -target_link_libraries(heatTransfer_write_ascii - MPI::MPI_C ${CMAKE_THREAD_LIBS_INIT} -) - -if(ADIOS2_HAVE_HDF5) - add_executable(heatTransfer_write_hdf5 - main.cpp - HeatTransfer.cpp - Settings.cpp - IO_hdf5_a.cpp - ) - target_include_directories(heatTransfer_write_hdf5 - PRIVATE ${HDF5_C_INCLUDE_DIRS} - ) - target_link_libraries(heatTransfer_write_hdf5 - ${HDF5_C_LIBRARIES} MPI::MPI_C ${CMAKE_THREAD_LIBS_INIT} - ) - - if(HDF5_IS_PARALLEL) - add_executable(heatTransfer_write_ph5 - main.cpp - HeatTransfer.cpp - Settings.cpp - IO_ph5.cpp - ) - target_include_directories(heatTransfer_write_ph5 - PRIVATE ${HDF5_C_INCLUDE_DIRS} - ) - target_link_libraries(heatTransfer_write_ph5 - ${HDF5_C_LIBRARIES} MPI::MPI_C ${CMAKE_THREAD_LIBS_INIT} - ) - endif() - - if(NOT (HDF5_VERSION VERSION_LESS 1.11)) - add_executable(heatTransfer_write_h5mixer - main.cpp - HeatTransfer.cpp - Settings.cpp - IO_h5mixer.cpp - ) - target_link_libraries(heatTransfer_write_h5mixer - adios2::cxx11_mpi MPI::MPI_C ${CMAKE_THREAD_LIBS_INIT} - ) - endif() -endif() diff --git a/examples/hello/CMakeLists.txt b/examples/hello/CMakeLists.txt index 1de325635a..dd90609718 100644 --- a/examples/hello/CMakeLists.txt +++ b/examples/hello/CMakeLists.txt @@ -3,13 +3,16 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_subdirectory(bpWriter) +add_subdirectory(bpAttributeWriter) +add_subdirectory(bpFlushWriter) + +if(ADIOS2_HAVE_MPI) + add_subdirectory(bpFWriteCRead) +endif() + add_subdirectory(bpReader) add_subdirectory(bpTimeWriter) -add_subdirectory(bpFlushWriter) -add_subdirectory(bpAttributeWriter) -add_subdirectory(inlineReaderWriter) -add_subdirectory(skeleton) +add_subdirectory(bpWriter) if(ADIOS2_HAVE_DataMan) add_subdirectory(datamanReader) @@ -21,20 +24,23 @@ if(ADIOS2_HAVE_DataSpaces) add_subdirectory(dataspacesWriter) endif() -if(ADIOS2_HAVE_SST) - add_subdirectory(sstReader) - add_subdirectory(sstWriter) -endif() - if(ADIOS2_HAVE_HDF5) add_subdirectory(hdf5Writer) add_subdirectory(hdf5Reader) + if(HDF5_VERSION VERSION_GREATER_EQUAL 1.14) + add_subdirectory(hdf5SubFile) + endif() endif() -if(ADIOS2_HAVE_MPI) - add_subdirectory(bpFWriteCRead) +if(ADIOS2_HAVE_Fortran) + add_subdirectory(inlineFWriteCppRead) endif() -if(ADIOS2_HAVE_Fortran) - add_subdirectory(inlineFWriteCppRead) +add_subdirectory(inlineMWE) +add_subdirectory(inlineReaderWriter) +add_subdirectory(skeleton) + +if(ADIOS2_HAVE_SST) + add_subdirectory(sstReader) + add_subdirectory(sstWriter) endif() diff --git a/examples/hello/bpAttributeWriter/CMakeLists.txt b/examples/hello/bpAttributeWriter/CMakeLists.txt index 6222de2122..c5eaf598e3 100644 --- a/examples/hello/bpAttributeWriter/CMakeLists.txt +++ b/examples/hello/bpAttributeWriter/CMakeLists.txt @@ -3,12 +3,30 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(hello_bpAttributeWriter helloBPAttributeWriter_nompi.cpp) -target_link_libraries(hello_bpAttributeWriter adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloBPAttributeWriterExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +add_executable(adios2_hello_bpAttributeWriter bpAttributeWriter_nompi.cpp) +target_link_libraries(adios2_hello_bpAttributeWriter adios2::cxx11) +install(TARGETS adios2_hello_bpAttributeWriter RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) if(ADIOS2_HAVE_MPI) - find_package(MPI COMPONENTS C REQUIRED) - add_executable(hello_bpAttributeWriter_mpi helloBPAttributeWriter.cpp) - target_link_libraries(hello_bpAttributeWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + add_executable(adios2_hello_bpAttributeWriter_mpi bpAttributeWriter.cpp) + target_link_libraries(adios2_hello_bpAttributeWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_bpAttributeWriter_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() diff --git a/examples/hello/bpAttributeWriter/helloBPAttributeWriter.cpp b/examples/hello/bpAttributeWriter/bpAttributeWriter.cpp similarity index 97% rename from examples/hello/bpAttributeWriter/helloBPAttributeWriter.cpp rename to examples/hello/bpAttributeWriter/bpAttributeWriter.cpp index dce3946fa1..beb376d434 100644 --- a/examples/hello/bpAttributeWriter/helloBPAttributeWriter.cpp +++ b/examples/hello/bpAttributeWriter/bpAttributeWriter.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloBPWriter.cpp: Simple self-descriptive example of how to write a variable + * bpAttributeWriter.cpp: Simple self-descriptive example of how to write a variable * to a BP File that lives in several MPI processes. * * Created on: Feb 16, 2017 diff --git a/examples/hello/bpAttributeWriter/helloBPAttributeWriter_nompi.cpp b/examples/hello/bpAttributeWriter/bpAttributeWriter_nompi.cpp similarity index 96% rename from examples/hello/bpAttributeWriter/helloBPAttributeWriter_nompi.cpp rename to examples/hello/bpAttributeWriter/bpAttributeWriter_nompi.cpp index 9b9fedd9ab..0a01f808fc 100644 --- a/examples/hello/bpAttributeWriter/helloBPAttributeWriter_nompi.cpp +++ b/examples/hello/bpAttributeWriter/bpAttributeWriter_nompi.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloBPWriter_nompi.cpp sequential non-mpi version of helloBPWriter + * bpAttributeWriter_nompi.cpp sequential non-mpi version of bpAttributeWriter * * Created on: Jan 9, 2017 * Author: William F Godoy godoywf@ornl.gov diff --git a/examples/hello/bpFWriteCRead/CMakeLists.txt b/examples/hello/bpFWriteCRead/CMakeLists.txt index ff5dcc1b2b..759d6919c6 100644 --- a/examples/hello/bpFWriteCRead/CMakeLists.txt +++ b/examples/hello/bpFWriteCRead/CMakeLists.txt @@ -3,18 +3,49 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(CppWriter CppWriter.cpp) -target_link_libraries(CppWriter adios2::cxx11_mpi MPI::MPI_C) - -add_executable(CppReader CppReader.cpp) -target_link_libraries(CppReader adios2::cxx11_mpi MPI::MPI_C) - -if(ADIOS2_HAVE_Fortran) - add_executable(FWriter FWriter.f90) - add_executable(FReader FReader.f90) - target_link_libraries(FWriter adios2::fortran_mpi MPI::MPI_Fortran) - target_link_libraries(FReader adios2::fortran_mpi MPI::MPI_Fortran) - set_target_properties(FWriter FReader PROPERTIES - LINKER_LANGUAGE Fortran - ) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloBPFWriteCReadExample) + +if(NOT TARGET adios2_core) + set(_components C) + + include(CheckLanguage) + check_language(Fortran) + if(CMAKE_Fortran_COMPILER) + enable_language(Fortran) + endif() + if(CMAKE_Fortran_COMPILER_LOADED) + list(APPEND _components Fortran) + endif() + + find_package(MPI COMPONENTS ${_components}) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + list(APPEND _components CXX) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if (ADIOS2_HAVE_MPI) + add_executable(adios2_hello_CppWriter CppWriter.cpp) + target_link_libraries(adios2_hello_CppWriter adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_CppWriter RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_executable(adios2_hello_CppReader CppReader.cpp) + target_link_libraries(adios2_hello_CppReader adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_CppReader RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + if(ADIOS2_HAVE_Fortran) + add_executable(adios2_hello_FWriter FWriter.f90) + target_link_libraries(adios2_hello_FWriter adios2::fortran_mpi MPI::MPI_Fortran) + install(TARGETS adios2_hello_FWriter RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_executable(adios2_hello_FReader FReader.f90) + target_link_libraries(adios2_hello_FReader adios2::fortran_mpi MPI::MPI_Fortran) + install(TARGETS adios2_hello_FReader RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + endif() endif() diff --git a/examples/hello/bpFlushWriter/CMakeLists.txt b/examples/hello/bpFlushWriter/CMakeLists.txt index 351282fa3c..61c78ebc7b 100644 --- a/examples/hello/bpFlushWriter/CMakeLists.txt +++ b/examples/hello/bpFlushWriter/CMakeLists.txt @@ -3,10 +3,29 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(hello_bpFlushWriter helloBPFlushWriter_nompi.cpp) -target_link_libraries(hello_bpFlushWriter adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloBPFlushWriterExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +add_executable(adios2_hello_bpFlushWriter bpFlushWriter_nompi.cpp) +target_link_libraries(adios2_hello_bpFlushWriter adios2::cxx11) +install(TARGETS adios2_hello_bpFlushWriter RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) if(ADIOS2_HAVE_MPI) - add_executable(hello_bpFlushWriter_mpi helloBPFlushWriter.cpp) - target_link_libraries(hello_bpFlushWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + add_executable(adios2_hello_bpFlushWriter_mpi bpFlushWriter.cpp) + target_link_libraries(adios2_hello_bpFlushWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_bpFlushWriter_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() diff --git a/examples/hello/bpFlushWriter/helloBPFlushWriter.cpp b/examples/hello/bpFlushWriter/bpFlushWriter.cpp similarity index 97% rename from examples/hello/bpFlushWriter/helloBPFlushWriter.cpp rename to examples/hello/bpFlushWriter/bpFlushWriter.cpp index bcdfc441f9..785ec43369 100644 --- a/examples/hello/bpFlushWriter/helloBPFlushWriter.cpp +++ b/examples/hello/bpFlushWriter/bpFlushWriter.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloBPFlushWriter.cpp: Example that tests buffer overflow forcing a flush to + * bpFlushWriter.cpp: Example that tests buffer overflow forcing a flush to * transports when writing a large variable in independent N-to-N mode. This * will have performance penalties, but it's safer. * diff --git a/examples/hello/bpFlushWriter/helloBPFlushWriter_nompi.cpp b/examples/hello/bpFlushWriter/bpFlushWriter_nompi.cpp similarity index 96% rename from examples/hello/bpFlushWriter/helloBPFlushWriter_nompi.cpp rename to examples/hello/bpFlushWriter/bpFlushWriter_nompi.cpp index edd92663ac..f8480c4464 100644 --- a/examples/hello/bpFlushWriter/helloBPFlushWriter_nompi.cpp +++ b/examples/hello/bpFlushWriter/bpFlushWriter_nompi.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloBPWriter_nompi.cpp sequential non-mpi version of helloBPWriter + * bpFlushWriter_nompi.cpp sequential non-mpi version of bpFlushWriter * * Created on: Jan 9, 2017 * Author: William F Godoy godoywf@ornl.gov diff --git a/examples/hello/bpReader/CMakeLists.txt b/examples/hello/bpReader/CMakeLists.txt index 462227301f..95be573537 100644 --- a/examples/hello/bpReader/CMakeLists.txt +++ b/examples/hello/bpReader/CMakeLists.txt @@ -3,28 +3,59 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(hello_bpReader helloBPReader_nompi.cpp) -target_link_libraries(hello_bpReader adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloBPReaderExample) -if(ADIOS2_HAVE_Fortran) - add_executable(hello_bpReaderHeatMap3D_f helloBPReaderHeatMap3D.F90) - set_property(TARGET hello_bpReaderHeatMap3D_f PROPERTY LINKER_LANGUAGE Fortran) - target_link_libraries(hello_bpReaderHeatMap3D_f adios2::fortran) +if(NOT TARGET adios2::cxx11) + set(_components C) + + include(CheckLanguage) + check_language(Fortran) + if(CMAKE_Fortran_COMPILER) + enable_language(Fortran) + endif() + if(CMAKE_Fortran_COMPILER_LOADED) + list(APPEND _components Fortran) + endif() + + find_package(MPI COMPONENTS ${_components}) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + list(APPEND _components CXX) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) endif() +add_executable(adios2_hello_bpReader bpReader_nompi.cpp) +target_link_libraries(adios2_hello_bpReader adios2::cxx11) +install(TARGETS adios2_hello_bpReader RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + if(ADIOS2_HAVE_MPI) - add_executable(hello_bpReader_mpi helloBPReader.cpp) - target_link_libraries(hello_bpReader_mpi adios2::cxx11_mpi MPI::MPI_C) - - add_executable(hello_bpReaderHeatMap2D helloBPReaderHeatMap2D.cpp) - target_link_libraries(hello_bpReaderHeatMap2D adios2::cxx11_mpi MPI::MPI_C) - - add_executable(hello_bpReaderHeatMap3D helloBPReaderHeatMap3D.cpp) - target_link_libraries(hello_bpReaderHeatMap3D adios2::cxx11_mpi MPI::MPI_C) - - if(ADIOS2_HAVE_Fortran) - add_executable(hello_bpReaderHeatMap3D_f_mpi helloBPReaderHeatMap3D.F90) - target_link_libraries(hello_bpReaderHeatMap3D_f_mpi adios2::fortran_mpi MPI::MPI_Fortran) - set_property(TARGET hello_bpReaderHeatMap3D_f_mpi PROPERTY LINKER_LANGUAGE Fortran) + add_executable(adios2_hello_bpReader_mpi bpReader.cpp) + target_link_libraries(adios2_hello_bpReader_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_bpReader_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_executable(adios2_hello_bpReaderHeatMap2D bpReaderHeatMap2D.cpp) + target_link_libraries(adios2_hello_bpReaderHeatMap2D adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_bpReaderHeatMap2D RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_executable(adios2_hello_bpReaderHeatMap3D bpReaderHeatMap3D.cpp) + target_link_libraries(adios2_hello_bpReaderHeatMap3D adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_bpReaderHeatMap3D RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif() + +if(ADIOS2_HAVE_Fortran) + add_executable(adios2_hello_bpReaderHeatMap3D_f bpReaderHeatMap3D.F90) + target_link_libraries(adios2_hello_bpReaderHeatMap3D_f adios2::fortran) + install(TARGETS adios2_hello_bpReaderHeatMap3D_f RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + if(ADIOS2_HAVE_MPI) + add_executable(adios2_hello_bpReaderHeatMap3D_f_mpi bpReaderHeatMap3D.F90) + target_link_libraries(adios2_hello_bpReaderHeatMap3D_f_mpi adios2::fortran_mpi MPI::MPI_Fortran) + install(TARGETS adios2_hello_bpReaderHeatMap3D_f_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() endif() diff --git a/examples/hello/bpReader/helloBPReader.cpp b/examples/hello/bpReader/bpReader.cpp similarity index 97% rename from examples/hello/bpReader/helloBPReader.cpp rename to examples/hello/bpReader/bpReader.cpp index 9da7f3c83e..d873b76c3a 100644 --- a/examples/hello/bpReader/helloBPReader.cpp +++ b/examples/hello/bpReader/bpReader.cpp @@ -2,8 +2,8 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloBPReader.cpp: Simple self-descriptive example of how to read a variable - * to a BP File. + * bpReader.cpp: Simple self-descriptive example of how to read a variable + * from a BP File. * * Try running like this from the build directory: * mpirun -np 3 ./bin/hello_bpReader diff --git a/examples/hello/bpReader/helloBPReaderHeatMap2D.cpp b/examples/hello/bpReader/bpReaderHeatMap2D.cpp similarity index 98% rename from examples/hello/bpReader/helloBPReaderHeatMap2D.cpp rename to examples/hello/bpReader/bpReaderHeatMap2D.cpp index 184d5730c2..46df44ce90 100644 --- a/examples/hello/bpReader/helloBPReaderHeatMap2D.cpp +++ b/examples/hello/bpReader/bpReaderHeatMap2D.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloBPReaderHeatMap.cpp : Writes a heat map in a regular 2D mesh, + * bpReaderHeatMap2D.cpp : Writes a heat map in a regular 2D mesh, * values grow from 0 in increments of 1 * * temperature[gNx, Ny] diff --git a/examples/hello/bpReader/helloBPReaderHeatMap2D.py b/examples/hello/bpReader/bpReaderHeatMap2D.py similarity index 75% rename from examples/hello/bpReader/helloBPReaderHeatMap2D.py rename to examples/hello/bpReader/bpReaderHeatMap2D.py index 9aa8925a39..ea63fee022 100644 --- a/examples/hello/bpReader/helloBPReaderHeatMap2D.py +++ b/examples/hello/bpReader/bpReaderHeatMap2D.py @@ -2,7 +2,7 @@ # Distributed under the OSI-approved Apache License, Version 2.0. See # accompanying file Copyright.txt for details. # -# helloBPReaderHeatMap2D.py +# bpReaderHeatMap2D.py # # # Created on: Dec 5th, 2017 @@ -41,10 +41,11 @@ adios = adios2.ADIOS(comm) ioWrite = adios.DeclareIO("ioWriter") -varTemperature = ioWrite.DefineVariable("temperature2D", temperatures, shape, - start, count, adios2.ConstantDims) +varTemperature = ioWrite.DefineVariable( + "temperature2D", temperatures, shape, start, count, adios2.ConstantDims +) -obpStream = ioWrite.Open('HeatMap2D_py.bp', adios2.Mode.Write) +obpStream = ioWrite.Open("HeatMap2D_py.bp", adios2.Mode.Write) obpStream.Put(varTemperature, temperatures) obpStream.Close() @@ -52,7 +53,7 @@ if rank == 0: ioRead = adios.DeclareIO("ioReader") - ibpStream = ioRead.Open('HeatMap2D_py.bp', adios2.Mode.Read, MPI.COMM_SELF) + ibpStream = ioRead.Open("HeatMap2D_py.bp", adios2.Mode.Read, MPI.COMM_SELF) var_inTemperature = ioRead.InquireVariable("temperature2D") @@ -60,15 +61,15 @@ var_inTemperature.SetSelection([[2, 2], [4, 4]]) inSize = var_inTemperature.SelectionSize() - print('Incoming size ' + str(inSize)) + print("Incoming size " + str(inSize)) inTemperatures = numpy.zeros(inSize, dtype=numpy.int) ibpStream.Get(var_inTemperature, inTemperatures, adios2.Mode.Sync) - print('Incoming temperature map') + print("Incoming temperature map") for i in range(0, inTemperatures.size): - print(str(inTemperatures[i]) + ' ') + print(str(inTemperatures[i]) + " ") if (i + 1) % 4 == 0: print() diff --git a/examples/hello/bpReader/helloBPReaderHeatMap3D.F90 b/examples/hello/bpReader/bpReaderHeatMap3D.F90 similarity index 98% rename from examples/hello/bpReader/helloBPReaderHeatMap3D.F90 rename to examples/hello/bpReader/bpReaderHeatMap3D.F90 index e44d9c53bf..3bd7251e89 100644 --- a/examples/hello/bpReader/helloBPReaderHeatMap3D.F90 +++ b/examples/hello/bpReader/bpReaderHeatMap3D.F90 @@ -1,4 +1,4 @@ -program helloBPReaderHeatMap3D +program bpReaderHeatMap3D #if ADIOS2_USE_MPI use mpi #endif @@ -130,4 +130,4 @@ program helloBPReaderHeatMap3D call MPI_Finalize(ierr) #endif -end program helloBPReaderHeatMap3D +end program bpReaderHeatMap3D diff --git a/examples/hello/bpReader/helloBPReaderHeatMap3D.cpp b/examples/hello/bpReader/bpReaderHeatMap3D.cpp similarity index 100% rename from examples/hello/bpReader/helloBPReaderHeatMap3D.cpp rename to examples/hello/bpReader/bpReaderHeatMap3D.cpp diff --git a/examples/hello/bpReader/helloBPReader_nompi.cpp b/examples/hello/bpReader/bpReader_nompi.cpp similarity index 97% rename from examples/hello/bpReader/helloBPReader_nompi.cpp rename to examples/hello/bpReader/bpReader_nompi.cpp index 629fa2e1f9..b2651d17fa 100644 --- a/examples/hello/bpReader/helloBPReader_nompi.cpp +++ b/examples/hello/bpReader/bpReader_nompi.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloBPReader.cpp: Simple self-descriptive example of how to read a variable + * bpReader_nompi.cpp: Simple self-descriptive example of how to read a variable * from a BP File. * * Created on: Feb 16, 2017 diff --git a/examples/hello/bpTimeWriter/CMakeLists.txt b/examples/hello/bpTimeWriter/CMakeLists.txt index 5306bbd375..30a9f1d361 100644 --- a/examples/hello/bpTimeWriter/CMakeLists.txt +++ b/examples/hello/bpTimeWriter/CMakeLists.txt @@ -3,10 +3,29 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(hello_bpTimeWriter helloBPTimeWriter_nompi.cpp) -target_link_libraries(hello_bpTimeWriter adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloBPTimeWriterExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +add_executable(adios2_hello_bpTimeWriter bpTimeWriter_nompi.cpp) +target_link_libraries(adios2_hello_bpTimeWriter adios2::cxx11) +install(TARGETS adios2_hello_bpTimeWriter RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) if(ADIOS2_HAVE_MPI) - add_executable(hello_bpTimeWriter_mpi helloBPTimeWriter.cpp) - target_link_libraries(hello_bpTimeWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + add_executable(adios2_hello_bpTimeWriter_mpi bpTimeWriter.cpp) + target_link_libraries(adios2_hello_bpTimeWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_bpTimeWriter_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() diff --git a/examples/hello/bpTimeWriter/helloBPTimeWriter.cpp b/examples/hello/bpTimeWriter/bpTimeWriter.cpp similarity index 98% rename from examples/hello/bpTimeWriter/helloBPTimeWriter.cpp rename to examples/hello/bpTimeWriter/bpTimeWriter.cpp index eab24b40e9..77e37389cc 100644 --- a/examples/hello/bpTimeWriter/helloBPTimeWriter.cpp +++ b/examples/hello/bpTimeWriter/bpTimeWriter.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloBPTimeWriter.cpp example for writing a variable using the Advance + * bpTimeWriter.cpp example for writing a variable using the Advance * function for time aggregation. Time step is saved as an additional (global) * single value variable, just for tracking purposes. * diff --git a/examples/hello/bpTimeWriter/helloBPTimeWriter.py b/examples/hello/bpTimeWriter/bpTimeWriter.py similarity index 87% rename from examples/hello/bpTimeWriter/helloBPTimeWriter.py rename to examples/hello/bpTimeWriter/bpTimeWriter.py index 4ddff5a1aa..87afc7f1c1 100644 --- a/examples/hello/bpTimeWriter/helloBPTimeWriter.py +++ b/examples/hello/bpTimeWriter/bpTimeWriter.py @@ -2,7 +2,7 @@ # Distributed under the OSI-approved Apache License, Version 2.0. See # accompanying file Copyright.txt for details. # -# test_hello.py +# bpTimeWriter.py # Created on: Feb 2, 2017 # Author: William F Godoy godoywf@ornl.gov @@ -28,8 +28,9 @@ bpIO = adios.DeclareIO("BPN2N") # Variables -bpArray = bpIO.DefineVariable("bpArray", myArray, [size * nx], [rank * nx], - [nx], adios2.ConstantDims) +bpArray = bpIO.DefineVariable( + "bpArray", myArray, [size * nx], [rank * nx], [nx], adios2.ConstantDims +) bpTimeStep = bpIO.DefineVariable("bpTimeStep", time) # Engine diff --git a/examples/hello/bpTimeWriter/helloBPTimeWriter_nompi.cpp b/examples/hello/bpTimeWriter/bpTimeWriter_nompi.cpp similarity index 96% rename from examples/hello/bpTimeWriter/helloBPTimeWriter_nompi.cpp rename to examples/hello/bpTimeWriter/bpTimeWriter_nompi.cpp index 9165189504..ddfd113fa4 100644 --- a/examples/hello/bpTimeWriter/helloBPTimeWriter_nompi.cpp +++ b/examples/hello/bpTimeWriter/bpTimeWriter_nompi.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloBPTimeWriter_nompi.cpp no mpi version of helloBPTimeWriter.cpp + * bpTimeWriter_nompi.cpp no mpi version of bpTimeWriter.cpp * * Created on: Feb 16, 2017 * Author: William F Godoy godoywf@ornl.gov diff --git a/examples/hello/bpWriteReadCuda/CMakeLists.txt b/examples/hello/bpWriteReadCuda/CMakeLists.txt new file mode 100644 index 0000000000..453867f0b4 --- /dev/null +++ b/examples/hello/bpWriteReadCuda/CMakeLists.txt @@ -0,0 +1,25 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloBPWriteReadCudaExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(CUDAToolkit REQUIRED) + if(CUDAToolkit_FOUND) + enable_language(CUDA) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_CUDA OR ADIOS2_HAVE_Kokkos_CUDA) + add_executable(adios2_hello_bpWriteReadCuda bpWriteReadCuda.cu) + target_link_libraries(adios2_hello_bpWriteReadCuda PUBLIC adios2::cxx11 CUDA::cudart) + set_target_properties(adios2_hello_bpWriteReadCuda PROPERTIES CUDA_SEPARABLE_COMPILATION ON) + install(TARGETS adios2_hello_bpWriteReadCuda RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif() diff --git a/examples/cuda/cudaBPWriteRead.cu b/examples/hello/bpWriteReadCuda/bpWriteReadCuda.cu similarity index 96% rename from examples/cuda/cudaBPWriteRead.cu rename to examples/hello/bpWriteReadCuda/bpWriteReadCuda.cu index 1d2dcd4eda..953ae92924 100644 --- a/examples/cuda/cudaBPWriteRead.cu +++ b/examples/hello/bpWriteReadCuda/bpWriteReadCuda.cu @@ -1,4 +1,7 @@ /* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * * Simple example of writing and reading data * through ADIOS2 BP engine with multiple simulations steps * for every IO step. diff --git a/examples/hello/bpWriter/CMakeLists.txt b/examples/hello/bpWriter/CMakeLists.txt index aad594f556..0e48312f8c 100644 --- a/examples/hello/bpWriter/CMakeLists.txt +++ b/examples/hello/bpWriter/CMakeLists.txt @@ -3,50 +3,89 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(hello_bpWriter helloBPWriter.cpp) -target_link_libraries(hello_bpWriter adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloBPWriterExample) -add_executable(hello_bpWriter_c helloBPWriter.c) -target_link_libraries(hello_bpWriter_c adios2::c) +if(NOT TARGET adios2_core) + set(_components C) -add_executable(hello_bpPutDeferred helloBPPutDeferred.cpp) -target_link_libraries(hello_bpPutDeferred adios2::cxx11) + include(CheckLanguage) + check_language(Fortran) + if(CMAKE_Fortran_COMPILER) + enable_language(Fortran) + endif() + if(CMAKE_Fortran_COMPILER_LOADED) + list(APPEND _components Fortran) + endif() + + find_package(MPI COMPONENTS ${_components}) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + list(APPEND _components CXX) + + find_package(SZ QUIET) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +add_executable(adios2_hello_bpWriter bpWriter.cpp) +target_link_libraries(adios2_hello_bpWriter adios2::cxx11) +install(TARGETS adios2_hello_bpWriter RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + +add_executable(adios2_hello_bpWriter_c bpWriter.c) +target_link_libraries(adios2_hello_bpWriter_c adios2::c) +install(TARGETS adios2_hello_bpWriter_c RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + +add_executable(adios2_hello_bpPutDeferred bpPutDeferred.cpp) +target_link_libraries(adios2_hello_bpPutDeferred adios2::cxx11) +install(TARGETS adios2_hello_bpPutDeferred RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) -add_executable(hello_bpSubStreams helloBPSubStreams.cpp) -target_link_libraries(hello_bpSubStreams adios2::cxx11) +add_executable(adios2_hello_bpSubStreams bpSubStreams.cpp) +target_link_libraries(adios2_hello_bpSubStreams adios2::cxx11) +install(TARGETS adios2_hello_bpSubStreams RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) if(ADIOS2_HAVE_SZ) - add_executable(hello_bpSZ helloBPSZ.cpp) - target_link_libraries(hello_bpSZ adios2::cxx11) + add_executable(adios2_hello_bpSZ bpSZ.cpp) + target_link_libraries(adios2_hello_bpSZ adios2::cxx11) + install(TARGETS adios2_hello_bpSZ RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() if(ADIOS2_HAVE_Fortran) - add_executable(hello_bpWriter_f helloBPWriter.F90) - set_property(TARGET hello_bpWriter_f PROPERTY LINKER_LANGUAGE Fortran) - target_link_libraries(hello_bpWriter_f adios2::fortran) + add_executable(adios2_hello_bpWriter_f bpWriter.F90) + target_link_libraries(adios2_hello_bpWriter_f adios2::fortran) + install(TARGETS adios2_hello_bpWriter_f RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() if(ADIOS2_HAVE_MPI) - add_executable(hello_bpWriter_mpi helloBPWriter.cpp) - target_link_libraries(hello_bpWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + add_executable(adios2_hello_bpWriter_mpi bpWriter.cpp) + target_link_libraries(adios2_hello_bpWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_bpWriter_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) - add_executable(hello_bpWriter_c_mpi helloBPWriter.c) - target_link_libraries(hello_bpWriter_c_mpi adios2::c_mpi MPI::MPI_C) + add_executable(adios2_hello_bpWriter_c_mpi bpWriter.c) + target_link_libraries(adios2_hello_bpWriter_c_mpi adios2::c_mpi MPI::MPI_C) + install(TARGETS adios2_hello_bpWriter_c_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) - add_executable(hello_bpPutDeferred_mpi helloBPPutDeferred.cpp) - target_link_libraries(hello_bpPutDeferred_mpi adios2::cxx11_mpi MPI::MPI_C) + add_executable(adios2_hello_bpPutDeferred_mpi bpPutDeferred.cpp) + target_link_libraries(adios2_hello_bpPutDeferred_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_bpPutDeferred_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) - add_executable(hello_bpSubStreams_mpi helloBPSubStreams.cpp) - target_link_libraries(hello_bpSubStreams_mpi adios2::cxx11_mpi MPI::MPI_C) + add_executable(adios2_hello_bpSubStreams_mpi bpSubStreams.cpp) + target_link_libraries(adios2_hello_bpSubStreams_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_bpSubStreams_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) if(ADIOS2_HAVE_SZ) - add_executable(hello_bpSZ_mpi helloBPSZ.cpp) - target_link_libraries(hello_bpSZ_mpi adios2::cxx11_mpi MPI::MPI_C) + add_executable(adios2_hello_bpSZ_mpi bpSZ.cpp) + target_link_libraries(adios2_hello_bpSZ_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_bpSZ_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() if(ADIOS2_HAVE_Fortran) - add_executable(hello_bpWriter_f_mpi helloBPWriter.F90) - set_property(TARGET hello_bpWriter_f_mpi PROPERTY LINKER_LANGUAGE Fortran) - target_link_libraries(hello_bpWriter_f_mpi adios2::fortran_mpi MPI::MPI_Fortran) + add_executable(adios2_hello_bpWriter_f_mpi bpWriter.F90) + target_link_libraries(adios2_hello_bpWriter_f_mpi adios2::fortran_mpi MPI::MPI_Fortran) + install(TARGETS adios2_hello_bpWriter_f_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() endif() diff --git a/examples/hello/bpWriter/helloBPPutDeferred.cpp b/examples/hello/bpWriter/bpPutDeferred.cpp similarity index 91% rename from examples/hello/bpWriter/helloBPPutDeferred.cpp rename to examples/hello/bpWriter/bpPutDeferred.cpp index 209486496d..bec6d3e289 100644 --- a/examples/hello/bpWriter/helloBPPutDeferred.cpp +++ b/examples/hello/bpWriter/bpPutDeferred.cpp @@ -2,17 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloBPPutDeferred.cpp - * - * Created on: Oct 23, 2017 - * Author: William F Godoy godoywf@ornl.gov - */ - -/* - * Distributed under the OSI-approved Apache License, Version 2.0. See - * accompanying file Copyright.txt for details. - * - * helloBPPutDeferred.cpp: Simple self-descriptive example of how to write a + * bpPutDeferred.cpp: Simple self-descriptive example of how to write a * variable * to a BP File that lives in several MPI processes. * diff --git a/examples/hello/bpWriter/helloBPSZ.cpp b/examples/hello/bpWriter/bpSZ.cpp similarity index 98% rename from examples/hello/bpWriter/helloBPSZ.cpp rename to examples/hello/bpWriter/bpSZ.cpp index 5678ecb12c..357f42f829 100644 --- a/examples/hello/bpWriter/helloBPSZ.cpp +++ b/examples/hello/bpWriter/bpSZ.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloBPSZ.cpp : example passing runtime compression arguments + * bpSZ.cpp : example passing runtime compression arguments * * Created on: Aug 3, 2018 * Author: William F Godoy godoywf@ornl.gov diff --git a/examples/hello/bpWriter/helloBPSubStreams.cpp b/examples/hello/bpWriter/bpSubStreams.cpp similarity index 99% rename from examples/hello/bpWriter/helloBPSubStreams.cpp rename to examples/hello/bpWriter/bpSubStreams.cpp index 54db43007d..dad04e82b7 100644 --- a/examples/hello/bpWriter/helloBPSubStreams.cpp +++ b/examples/hello/bpWriter/bpSubStreams.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloBPSubStreams.cpp + * bpSubStreams.cpp * * Created on: Feb 21, 2018 * Author: William F Godoy godoywf@ornl.gov diff --git a/examples/hello/bpWriter/helloBPWriter.F90 b/examples/hello/bpWriter/bpWriter.F90 similarity index 97% rename from examples/hello/bpWriter/helloBPWriter.F90 rename to examples/hello/bpWriter/bpWriter.F90 index d1cea302ae..296cb290a1 100644 --- a/examples/hello/bpWriter/helloBPWriter.F90 +++ b/examples/hello/bpWriter/bpWriter.F90 @@ -1,4 +1,4 @@ -program helloBPWriter +program bpWriter #if ADIOS2_USE_MPI use mpi #endif @@ -72,4 +72,4 @@ program helloBPWriter call MPI_Finalize(ierr) #endif -end program helloBPWriter +end program bpWriter diff --git a/examples/hello/bpWriter/helloBPWriter.c b/examples/hello/bpWriter/bpWriter.c similarity index 97% rename from examples/hello/bpWriter/helloBPWriter.c rename to examples/hello/bpWriter/bpWriter.c index b88271347b..a4e17ce3ae 100644 --- a/examples/hello/bpWriter/helloBPWriter.c +++ b/examples/hello/bpWriter/bpWriter.c @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloBPWriter.c : C bindings version of helloBPWriter.cpp + * bpWriter.c : C bindings version of bpWriter.cpp * * Created on: Aug 8, 2017 * Author: William F Godoy godoywf@ornl.gov diff --git a/examples/hello/bpWriter/helloBPWriter.cpp b/examples/hello/bpWriter/bpWriter.cpp similarity index 97% rename from examples/hello/bpWriter/helloBPWriter.cpp rename to examples/hello/bpWriter/bpWriter.cpp index 5a80cdbeb4..878a02a60a 100644 --- a/examples/hello/bpWriter/helloBPWriter.cpp +++ b/examples/hello/bpWriter/bpWriter.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloBPWriter.cpp: Simple self-descriptive example of how to write a variable + * bpWriter.cpp: Simple self-descriptive example of how to write a variable * to a BP File that lives in several MPI processes. * * Created on: Feb 16, 2017 diff --git a/examples/hello/bpWriter/helloBPWriter.py b/examples/hello/bpWriter/bpWriter.py similarity index 73% rename from examples/hello/bpWriter/helloBPWriter.py rename to examples/hello/bpWriter/bpWriter.py index ce29de2f0e..5218e79933 100644 --- a/examples/hello/bpWriter/helloBPWriter.py +++ b/examples/hello/bpWriter/bpWriter.py @@ -2,7 +2,7 @@ # Distributed under the OSI-approved Apache License, Version 2.0. See # accompanying file Copyright.txt for details. # -# helloBPWriter_nompi.py : only works with non MPI version +# bpWriter.py : only works with MPI version # Created on: Feb 2, 2017 # Author: William F Godoy godoywf@ornl.gov from mpi4py import MPI @@ -15,7 +15,7 @@ size = comm.Get_size() # User data -myArray = numpy.array([0, 1., 2., 3., 4., 5., 6., 7., 8., 9.]) +myArray = numpy.array([0, 1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0]) Nx = myArray.size # ADIOS MPI Communicator @@ -23,20 +23,21 @@ # ADIOS IO bpIO = adios.DeclareIO("BPFile_N2N") -bpIO.SetEngine('bp3') +bpIO.SetEngine("bp3") # bpIO.SetParameters( {"Threads" : "2", "ProfileUnits" : "Microseconds", # "InitialBufferSize" : "17Kb"} ) bpIOParams = {} -bpIOParams['Threads'] = '2' -bpIOParams['ProfileUnits'] = 'Microseconds' -bpIOParams['InitialBufferSize'] = '17Kb' +bpIOParams["Threads"] = "2" +bpIOParams["ProfileUnits"] = "Microseconds" +bpIOParams["InitialBufferSize"] = "17Kb" bpIO.SetParameters(bpIOParams) -fileID = bpIO.AddTransport('File', {'Library': 'fstream'}) +fileID = bpIO.AddTransport("File", {"Library": "fstream"}) # ADIOS Variable name, shape, start, offset, constant dims ioArray = bpIO.DefineVariable( - "bpArray", myArray, [size * Nx], [rank * Nx], [Nx], adios2.ConstantDims) + "bpArray", myArray, [size * Nx], [rank * Nx], [Nx], adios2.ConstantDims +) # ADIOS Engine bpFileWriter = bpIO.Open("npArray.bp", adios2.Mode.Write) diff --git a/examples/hello/bpWriter/helloBPWriter_nompi.py b/examples/hello/bpWriter/bpWriter_nompi.py similarity index 72% rename from examples/hello/bpWriter/helloBPWriter_nompi.py rename to examples/hello/bpWriter/bpWriter_nompi.py index 9428808fa0..5155104df1 100644 --- a/examples/hello/bpWriter/helloBPWriter_nompi.py +++ b/examples/hello/bpWriter/bpWriter_nompi.py @@ -2,7 +2,7 @@ # Distributed under the OSI-approved Apache License, Version 2.0. See # accompanying file Copyright.txt for details. # -# helloBPWriter.py : only works with MPI version +# bpWriter_nonmpi.py : only works with non MPI version # Created on: Feb 2, 2017 # Author: William F Godoy godoywf@ornl.gov @@ -10,7 +10,7 @@ import adios2 # User data -myArray = numpy.array([0, 1., 2., 3., 4., 5., 6., 7., 8., 9.]) +myArray = numpy.array([0, 1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0]) Nx = myArray.size # adios @@ -20,8 +20,7 @@ bpIO = adios.DeclareIO("BPFile_N2N") # ADIOS Variable name, shape, start, offset, constant dims -ioArray = bpIO.DefineVariable( - "bpArray", myArray, [], [], [Nx], adios2.ConstantDims) +ioArray = bpIO.DefineVariable("bpArray", myArray, [], [], [Nx], adios2.ConstantDims) # ADIOS Engine bpFileWriter = bpIO.Open("npArray.bp", adios2.Mode.Write) diff --git a/examples/hello/datamanReader/CMakeLists.txt b/examples/hello/datamanReader/CMakeLists.txt index 56a6139009..656bacefac 100644 --- a/examples/hello/datamanReader/CMakeLists.txt +++ b/examples/hello/datamanReader/CMakeLists.txt @@ -3,8 +3,28 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -if(ADIOS2_HAVE_MPI) - add_executable(hello_datamanReader helloDataManReader.cpp) - target_link_libraries(hello_datamanReader adios2::cxx11_mpi MPI::MPI_C) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloDataManReaderExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ZeroMQ 4.1 QUIET) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_MPI AND ADIOS2_HAVE_DataMan) + add_executable(adios2_hello_datamanReader dataManReader.cpp) + target_link_libraries(adios2_hello_datamanReader adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_datamanReader RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() diff --git a/examples/hello/datamanReader/helloDataManReader.cpp b/examples/hello/datamanReader/dataManReader.cpp similarity index 98% rename from examples/hello/datamanReader/helloDataManReader.cpp rename to examples/hello/datamanReader/dataManReader.cpp index 8313a9a56d..2bc58495b2 100644 --- a/examples/hello/datamanReader/helloDataManReader.cpp +++ b/examples/hello/datamanReader/dataManReader.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloDataManReader.cpp + * dataManReader.cpp * * Created on: Jan 9, 2017 * Author: Jason Wang diff --git a/examples/hello/datamanReader/helloDataManReader.py b/examples/hello/datamanReader/dataManReader.py similarity index 92% rename from examples/hello/datamanReader/helloDataManReader.py rename to examples/hello/datamanReader/dataManReader.py index 87248b6a64..c773e84fb8 100644 --- a/examples/hello/datamanReader/helloDataManReader.py +++ b/examples/hello/datamanReader/dataManReader.py @@ -2,7 +2,7 @@ # Distributed under the OSI-approved Apache License, Version 2.0. See # accompanying file Copyright.txt for details. # -# helloDataManReader.py +# dataManReader.py # # Created on: Sept 5, 2019 # Author: Jason Wang @@ -21,7 +21,7 @@ io.SetEngine("DataMan") io.SetParameters({"IPAddress": "127.0.0.1", "Port": "12306", "Timeout": "5"}) -engine = io.Open('HelloDataMan', adios2.Mode.Read, comm) +engine = io.Open("HelloDataMan", adios2.Mode.Read, comm) while True: stepStatus = engine.BeginStep() diff --git a/examples/hello/datamanWriter/CMakeLists.txt b/examples/hello/datamanWriter/CMakeLists.txt index 7c500d6e12..0bc0789ac6 100644 --- a/examples/hello/datamanWriter/CMakeLists.txt +++ b/examples/hello/datamanWriter/CMakeLists.txt @@ -3,7 +3,27 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -if(ADIOS2_HAVE_MPI) - add_executable(hello_datamanWriter helloDataManWriter.cpp) - target_link_libraries(hello_datamanWriter adios2::cxx11_mpi MPI::MPI_C) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloDataManWriterExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ZeroMQ 4.1 QUIET) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_MPI AND ADIOS2_HAVE_DataMan) + add_executable(adios2_hello_datamanWriter dataManWriter.cpp) + target_link_libraries(adios2_hello_datamanWriter adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_datamanWriter RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() diff --git a/examples/hello/datamanWriter/helloDataManWriter.cpp b/examples/hello/datamanWriter/dataManWriter.cpp similarity index 98% rename from examples/hello/datamanWriter/helloDataManWriter.cpp rename to examples/hello/datamanWriter/dataManWriter.cpp index bd29cb9c2b..fc106c2bb3 100644 --- a/examples/hello/datamanWriter/helloDataManWriter.cpp +++ b/examples/hello/datamanWriter/dataManWriter.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloDataManWriter.cpp + * dataManWriter.cpp * * Created on: Feb 16, 2017 * Author: Jason Wang diff --git a/examples/hello/datamanWriter/helloDataManWriter.py b/examples/hello/datamanWriter/dataManWriter.py similarity index 92% rename from examples/hello/datamanWriter/helloDataManWriter.py rename to examples/hello/datamanWriter/dataManWriter.py index e23774cb38..9035d0f42a 100644 --- a/examples/hello/datamanWriter/helloDataManWriter.py +++ b/examples/hello/datamanWriter/dataManWriter.py @@ -2,7 +2,7 @@ # Distributed under the OSI-approved Apache License, Version 2.0. See # accompanying file Copyright.txt for details. # -# helloDataManWriter.py +# dataManWriter.py # # Created on: Sept 5, 2019 # Author: Jason Wang @@ -36,9 +36,10 @@ io.SetParameters({"IPAddress": "127.0.0.1", "Port": "12306", "Timeout": "5"}) var = io.DefineVariable( - "FloatArray", floatArray, shape, start, count, adios2.ConstantDims) + "FloatArray", floatArray, shape, start, count, adios2.ConstantDims +) -engine = io.Open('HelloDataMan', adios2.Mode.Write) +engine = io.Open("HelloDataMan", adios2.Mode.Write) for i in range(steps): floatArray = floatArray + 1 diff --git a/examples/hello/dataspacesReader/CMakeLists.txt b/examples/hello/dataspacesReader/CMakeLists.txt index 7136868362..11e8e3ff13 100644 --- a/examples/hello/dataspacesReader/CMakeLists.txt +++ b/examples/hello/dataspacesReader/CMakeLists.txt @@ -3,10 +3,33 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(hello_dataSpacesReader helloDataSpacesReader.cpp) -target_link_libraries(hello_dataSpacesReader adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloDataSpacesReaderExample) -if(ADIOS2_HAVE_MPI) - add_executable(hello_dataSpacesReader_mpi helloDataSpacesReader.cpp) - target_link_libraries(hello_dataSpacesReader_mpi adios2::cxx11_mpi MPI::MPI_C) +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(DataSpaces 2.1.1 QUIET) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_DataSpaces) + add_executable(adios2_hello_dataSpacesReader dataSpacesReader.cpp) + target_link_libraries(adios2_hello_dataSpacesReader adios2::cxx11) + install(TARGETS adios2_hello_dataSpacesReader RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + if(ADIOS2_HAVE_MPI) + add_executable(adios2_hello_dataSpacesReader_mpi dataSpacesReader.cpp) + target_link_libraries(adios2_hello_dataSpacesReader_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_dataSpacesReader_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + endif() endif() diff --git a/examples/hello/dataspacesReader/helloDataSpacesReader.cpp b/examples/hello/dataspacesReader/dataSpacesReader.cpp similarity index 98% rename from examples/hello/dataspacesReader/helloDataSpacesReader.cpp rename to examples/hello/dataspacesReader/dataSpacesReader.cpp index c2efd7ee1b..c6f6731432 100644 --- a/examples/hello/dataspacesReader/helloDataSpacesReader.cpp +++ b/examples/hello/dataspacesReader/dataSpacesReader.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloDataSpacesReader.cpp + * dataSpacesReader.cpp * * Created on: Feb 06, 2019 * Author: Pradeep Subedi diff --git a/examples/hello/dataspacesWriter/CMakeLists.txt b/examples/hello/dataspacesWriter/CMakeLists.txt index 6518c8c24b..32a1bb4673 100644 --- a/examples/hello/dataspacesWriter/CMakeLists.txt +++ b/examples/hello/dataspacesWriter/CMakeLists.txt @@ -3,10 +3,33 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(hello_dataSpacesWriter helloDataSpacesWriter.cpp) -target_link_libraries(hello_dataSpacesWriter adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloDataSpacesWriterExample) -if(ADIOS2_HAVE_MPI) - add_executable(hello_dataSpacesWriter_mpi helloDataSpacesWriter.cpp) - target_link_libraries(hello_dataSpacesWriter_mpi adios2::cxx11_mpi MPI::MPI_C) +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(DataSpaces 2.1.1 QUIET) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_DataSpaces) + add_executable(adios2_hello_dataSpacesWriter dataSpacesWriter.cpp) + target_link_libraries(adios2_hello_dataSpacesWriter adios2::cxx11) + install(TARGETS adios2_hello_dataSpacesWriter RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + if(ADIOS2_HAVE_MPI) + add_executable(adios2_hello_dataSpacesWriter_mpi dataSpacesWriter.cpp) + target_link_libraries(adios2_hello_dataSpacesWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_dataSpacesWriter_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + endif() endif() diff --git a/examples/hello/dataspacesWriter/helloDataSpacesWriter.cpp b/examples/hello/dataspacesWriter/dataSpacesWriter.cpp similarity index 98% rename from examples/hello/dataspacesWriter/helloDataSpacesWriter.cpp rename to examples/hello/dataspacesWriter/dataSpacesWriter.cpp index 103578c716..9c9e23b466 100644 --- a/examples/hello/dataspacesWriter/helloDataSpacesWriter.cpp +++ b/examples/hello/dataspacesWriter/dataSpacesWriter.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloDataSpacesWriter.cpp + * dataSpacesWriter.cpp * * Created on: Feb 06, 2019 * Author: Pradeep Subedi diff --git a/examples/hello/hdf5Reader/CMakeLists.txt b/examples/hello/hdf5Reader/CMakeLists.txt index 2dd4227cf9..ebfcb9ad7b 100644 --- a/examples/hello/hdf5Reader/CMakeLists.txt +++ b/examples/hello/hdf5Reader/CMakeLists.txt @@ -3,10 +3,33 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(hello_hdf5Reader helloHDF5Reader_nompi.cpp) -target_link_libraries(hello_hdf5Reader adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloHDF5ReaderExample) -if(ADIOS2_HAVE_MPI) - add_executable(hello_hdf5Reader_mpi helloHDF5Reader.cpp) - target_link_libraries(hello_hdf5Reader_mpi adios2::cxx11_mpi MPI::MPI_C) +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(HDF5 QUIET COMPONENTS C) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_HDF5) + add_executable(adios2_hello_hdf5Reader hdf5Reader_nompi.cpp) + target_link_libraries(adios2_hello_hdf5Reader adios2::cxx11) + install(TARGETS adios2_hello_hdf5Reader RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + if(ADIOS2_HAVE_MPI) + add_executable(adios2_hello_hdf5Reader_mpi hdf5Reader.cpp) + target_link_libraries(adios2_hello_hdf5Reader_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_hdf5Reader_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + endif() endif() diff --git a/examples/hello/hdf5Reader/helloHDF5Reader.cpp b/examples/hello/hdf5Reader/hdf5Reader.cpp similarity index 99% rename from examples/hello/hdf5Reader/helloHDF5Reader.cpp rename to examples/hello/hdf5Reader/hdf5Reader.cpp index 33a2b7fb01..c1db98dde9 100644 --- a/examples/hello/hdf5Reader/helloHDF5Reader.cpp +++ b/examples/hello/hdf5Reader/hdf5Reader.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloHDF5Reader.cpp + * hdf5Reader.cpp * * Created on: Jan 24, 2018 * Author: Junmin Gu diff --git a/examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp b/examples/hello/hdf5Reader/hdf5Reader_nompi.cpp similarity index 99% rename from examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp rename to examples/hello/hdf5Reader/hdf5Reader_nompi.cpp index c52d7515e0..45826a8979 100644 --- a/examples/hello/hdf5Reader/helloHDF5Reader_nompi.cpp +++ b/examples/hello/hdf5Reader/hdf5Reader_nompi.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloHDF5Reader.cpp + * hdf5Reader.cpp * * Created on: Jan 24, 2018 * Author: Junmin Gu diff --git a/examples/hello/hdf5SubFile/CMakeLists.txt b/examples/hello/hdf5SubFile/CMakeLists.txt new file mode 100644 index 0000000000..81e494fa1b --- /dev/null +++ b/examples/hello/hdf5SubFile/CMakeLists.txt @@ -0,0 +1,30 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(HelloHDF5SubFileExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(HDF5 QUIET COMPONENTS C) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_MPI AND ADIOS2_HAVE_HDF5 AND HDF5_VERSION VERSION_GREATER_EQUAL 1.14) + add_executable(adios2_hello_hdf5Subfile hdf5SubFile.cpp) + target_link_libraries(adios2_hello_hdf5Subfile adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_hdf5Subfile RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif() + diff --git a/examples/h5subfile/h5_subfile.cpp b/examples/hello/hdf5SubFile/hdf5SubFile.cpp similarity index 99% rename from examples/h5subfile/h5_subfile.cpp rename to examples/hello/hdf5SubFile/hdf5SubFile.cpp index 09e3111ecf..a018267b1a 100644 --- a/examples/h5subfile/h5_subfile.cpp +++ b/examples/hello/hdf5SubFile/hdf5SubFile.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloHDF5Writer.cpp: Simple self-descriptive example of how to write a + * hdf5SubFile.cpp: Simple self-descriptive example of how to write a * variable to a parallel HDF5 File using MPI processes. * * Created on: March 6, 2023 diff --git a/examples/hello/hdf5Writer/CMakeLists.txt b/examples/hello/hdf5Writer/CMakeLists.txt index 934fbb4cfb..b1fd2bcdcf 100644 --- a/examples/hello/hdf5Writer/CMakeLists.txt +++ b/examples/hello/hdf5Writer/CMakeLists.txt @@ -3,10 +3,33 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(hello_hdf5Writer helloHDF5Writer_nompi.cpp) -target_link_libraries(hello_hdf5Writer adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloHDF5WriterExample) -if(ADIOS2_HAVE_MPI) - add_executable(hello_hdf5Writer_mpi helloHDF5Writer.cpp) - target_link_libraries(hello_hdf5Writer_mpi adios2::cxx11_mpi MPI::MPI_C) +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(HDF5 QUIET COMPONENTS C) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_HDF5) + add_executable(adios2_hello_hdf5Writer hdf5Writer_nompi.cpp) + target_link_libraries(adios2_hello_hdf5Writer adios2::cxx11) + install(TARGETS adios2_hello_hdf5Writer RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + if(ADIOS2_HAVE_MPI) + add_executable(adios2_hello_hdf5Writer_mpi hdf5Writer.cpp) + target_link_libraries(adios2_hello_hdf5Writer_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_hdf5Writer_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + endif() endif() diff --git a/examples/hello/hdf5Writer/helloHDF5Writer.cpp b/examples/hello/hdf5Writer/hdf5Writer.cpp similarity index 98% rename from examples/hello/hdf5Writer/helloHDF5Writer.cpp rename to examples/hello/hdf5Writer/hdf5Writer.cpp index 7b5e001533..3e09334593 100644 --- a/examples/hello/hdf5Writer/helloHDF5Writer.cpp +++ b/examples/hello/hdf5Writer/hdf5Writer.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloHDF5Writer.cpp: Simple self-descriptive example of how to write a + * hdf5Writer.cpp: Simple self-descriptive example of how to write a * variable to a parallel HDF5 File using MPI processes. * * Created on: March 20, 2017 diff --git a/examples/hello/hdf5Writer/helloHDF5Writer_nompi.cpp b/examples/hello/hdf5Writer/hdf5Writer_nompi.cpp similarity index 96% rename from examples/hello/hdf5Writer/helloHDF5Writer_nompi.cpp rename to examples/hello/hdf5Writer/hdf5Writer_nompi.cpp index 436cde2194..c781519f82 100644 --- a/examples/hello/hdf5Writer/helloHDF5Writer_nompi.cpp +++ b/examples/hello/hdf5Writer/hdf5Writer_nompi.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloHDF5Writer_nompi.cpp no mpi version of helloHDF5Writer.cpp + * hdf5Writer_nompi.cpp no mpi version of helloHDF5Writer.cpp * * Created on: March 20, 2017 * Author: Junmin diff --git a/examples/hello/inlineFWriteCppRead/CMakeLists.txt b/examples/hello/inlineFWriteCppRead/CMakeLists.txt index 64b99b539d..ad5cfbd537 100644 --- a/examples/hello/inlineFWriteCppRead/CMakeLists.txt +++ b/examples/hello/inlineFWriteCppRead/CMakeLists.txt @@ -3,17 +3,36 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -include(FortranCInterface) -FortranCInterface_HEADER(InlineExampleFC.h MACRO_NAMESPACE "FC_") -FortranCInterface_VERIFY(CXX QUIET) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloFWriteCppReadExample) -add_library(InlineMixedLangCPP inlineMixedLang.cpp) -target_link_libraries(InlineMixedLangCPP adios2::cxx11) -target_include_directories(InlineMixedLangCPP - PRIVATE - ${CMAKE_CURRENT_BINARY_DIR} - ) +if(NOT TARGET adios2_core) + set(_components CXX) -add_executable(InlineMixedLangF inlineMixedLang.f90) -target_link_libraries(InlineMixedLangF adios2::fortran InlineMixedLangCPP) -set_target_properties(InlineMixedLangF PROPERTIES LINKER_LANGUAGE Fortran) + include(CheckLanguage) + check_language(Fortran) + if(CMAKE_Fortran_COMPILER) + enable_language(Fortran) + endif() + if(CMAKE_Fortran_COMPILER_LOADED) + list(APPEND _components Fortran) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_Fortran) + include(FortranCInterface) + FortranCInterface_HEADER(InlineExampleFC.h MACRO_NAMESPACE "FC_") + FortranCInterface_VERIFY(CXX QUIET) + + add_library(adios2_hello_inlineMixedLang inlineMixedLang.cpp) + target_link_libraries(adios2_hello_inlineMixedLang adios2::cxx11) + target_include_directories(adios2_hello_inlineMixedLang PRIVATE ${CMAKE_CURRENT_BINARY_DIR}) + install(TARGETS adios2_hello_inlineMixedLang RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_executable(adios2_hello_inlineMixedLang_f inlineMixedLang.f90) + target_link_libraries(adios2_hello_inlineMixedLang_f adios2_hello_inlineMixedLang adios2::fortran) + set_target_properties(adios2_hello_inlineMixedLang_f PROPERTIES LINKER_LANGUAGE Fortran) + install(TARGETS adios2_hello_inlineMixedLang_f RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif() diff --git a/examples/hello/inlineMWE/CMakeLists.txt b/examples/hello/inlineMWE/CMakeLists.txt new file mode 100644 index 0000000000..98ac7fcc70 --- /dev/null +++ b/examples/hello/inlineMWE/CMakeLists.txt @@ -0,0 +1,17 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloInlineMWEExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +add_executable(adios2_hello_inlineMWE inlineMWE.cpp) +target_link_libraries(adios2_hello_inlineMWE adios2::cxx11) +install(TARGETS adios2_hello_inlineMWE RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) diff --git a/examples/inlineMWE/inlineMWE.cpp b/examples/hello/inlineMWE/inlineMWE.cpp similarity index 88% rename from examples/inlineMWE/inlineMWE.cpp rename to examples/hello/inlineMWE/inlineMWE.cpp index 41d4ba37a6..5dc5ed6f04 100644 --- a/examples/inlineMWE/inlineMWE.cpp +++ b/examples/hello/inlineMWE/inlineMWE.cpp @@ -1,3 +1,8 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + */ + #include #include diff --git a/examples/hello/inlineReaderWriter/CMakeLists.txt b/examples/hello/inlineReaderWriter/CMakeLists.txt index 25a8334140..cf76d4d0e6 100644 --- a/examples/hello/inlineReaderWriter/CMakeLists.txt +++ b/examples/hello/inlineReaderWriter/CMakeLists.txt @@ -3,10 +3,29 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(hello_inlineReaderWriter helloInlineReaderWriter.cpp) -target_link_libraries(hello_inlineReaderWriter adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloInlineReaderWriterExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +add_executable(adios2_hello_inlineReaderWriter inlineReaderWriter.cpp) +target_link_libraries(adios2_hello_inlineReaderWriter adios2::cxx11) +install(TARGETS adios2_hello_inlineReaderWriter RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) if(ADIOS2_HAVE_MPI) - add_executable(hello_inlineReaderWriter_mpi helloInlineReaderWriter.cpp) - target_link_libraries(hello_inlineReaderWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + add_executable(adios2_hello_inlineReaderWriter_mpi inlineReaderWriter.cpp) + target_link_libraries(adios2_hello_inlineReaderWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_inlineReaderWriter_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() diff --git a/examples/hello/inlineReaderWriter/helloInlineReaderWriter.cpp b/examples/hello/inlineReaderWriter/inlineReaderWriter.cpp similarity index 98% rename from examples/hello/inlineReaderWriter/helloInlineReaderWriter.cpp rename to examples/hello/inlineReaderWriter/inlineReaderWriter.cpp index 3fe9674924..f7ca536bfc 100644 --- a/examples/hello/inlineReaderWriter/helloInlineReaderWriter.cpp +++ b/examples/hello/inlineReaderWriter/inlineReaderWriter.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloInlineReaderWriter.cpp example borrowed from helloBPTimeWriter, using + * inlineReaderWriter.cpp example borrowed from bpTimeWriter, using * the inline engine. Writes a variable using the Advance function for time * aggregation. Time step is saved as an additional (global) single value * variable, just for tracking purposes. diff --git a/examples/hello/skeleton/CMakeLists.txt b/examples/hello/skeleton/CMakeLists.txt index 5e5a35007c..4c6ead50ab 100644 --- a/examples/hello/skeleton/CMakeLists.txt +++ b/examples/hello/skeleton/CMakeLists.txt @@ -3,16 +3,37 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(hello_skeletonWriter helloSkeletonWriter.cpp HelloSkeletonArgs.cpp) -target_link_libraries(hello_skeletonWriter adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloSkeletonExample) -add_executable(hello_skeletonReader helloSkeletonReader.cpp HelloSkeletonArgs.cpp) -target_link_libraries(hello_skeletonReader adios2::cxx11) +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +add_executable(adios2_hello_skeletonWriter skeletonWriter.cpp SkeletonArgs.cpp) +target_link_libraries(adios2_hello_skeletonWriter adios2::cxx11) +install(TARGETS adios2_hello_skeletonWriter RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + +add_executable(adios2_hello_skeletonReader skeletonReader.cpp SkeletonArgs.cpp) +target_link_libraries(adios2_hello_skeletonReader adios2::cxx11) +install(TARGETS adios2_hello_skeletonReader RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) if(ADIOS2_HAVE_MPI) - add_executable(hello_skeletonWriter_mpi helloSkeletonWriter.cpp HelloSkeletonArgs.cpp) - target_link_libraries(hello_skeletonWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + add_executable(adios2_hello_skeletonWriter_mpi skeletonWriter.cpp SkeletonArgs.cpp) + target_link_libraries(adios2_hello_skeletonWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_skeletonWriter_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) - add_executable(hello_skeletonReader_mpi helloSkeletonReader.cpp HelloSkeletonArgs.cpp) - target_link_libraries(hello_skeletonReader_mpi adios2::cxx11_mpi MPI::MPI_C) + add_executable(adios2_hello_skeletonReader_mpi skeletonReader.cpp SkeletonArgs.cpp) + target_link_libraries(adios2_hello_skeletonReader_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_skeletonReader_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() diff --git a/examples/hello/skeleton/HelloSkeletonArgs.cpp b/examples/hello/skeleton/SkeletonArgs.cpp similarity index 92% rename from examples/hello/skeleton/HelloSkeletonArgs.cpp rename to examples/hello/skeleton/SkeletonArgs.cpp index 2ee3b8ff64..109ca5388d 100644 --- a/examples/hello/skeleton/HelloSkeletonArgs.cpp +++ b/examples/hello/skeleton/SkeletonArgs.cpp @@ -6,7 +6,7 @@ * Author: Norbert Podhorszki */ -#include "HelloSkeletonArgs.h" +#include "SkeletonArgs.h" #include @@ -42,7 +42,7 @@ static void printUsage(bool isWriter) static unsigned int convertToUint(std::string varName, char *arg) { char *end; - unsigned int retval = std::strtoul(arg, &end, 10); + const auto retval = static_cast(std::strtoul(arg, &end, 10)); if (end[0] || errno == ERANGE) { throw std::invalid_argument("Invalid value given for " + varName + ": " + std::string(arg)); @@ -50,8 +50,7 @@ static unsigned int convertToUint(std::string varName, char *arg) return retval; } -HelloSkeletonArgs::HelloSkeletonArgs(bool isWriter, int argc, char *argv[], int rank, int nproc) -: rank{rank} +SkeletonArgs::SkeletonArgs(bool isWriter, int argc, char *argv[], int rank, int nproc) : rank{rank} { npx = npy = ndx = ndy = steps = sleeptime = 0; gndx = gndy = posx = posy = offsx = offsy = 0; @@ -98,7 +97,7 @@ HelloSkeletonArgs::HelloSkeletonArgs(bool isWriter, int argc, char *argv[], int } } -void HelloSkeletonArgs::DecomposeArray(size_t NX, size_t NY) +void SkeletonArgs::DecomposeArray(size_t NX, size_t NY) { gndx = static_cast(NX); gndy = static_cast(NY); diff --git a/examples/hello/skeleton/HelloSkeletonArgs.h b/examples/hello/skeleton/SkeletonArgs.h similarity index 93% rename from examples/hello/skeleton/HelloSkeletonArgs.h rename to examples/hello/skeleton/SkeletonArgs.h index 7ae34366f0..0433e83950 100644 --- a/examples/hello/skeleton/HelloSkeletonArgs.h +++ b/examples/hello/skeleton/SkeletonArgs.h @@ -11,7 +11,7 @@ #include -class HelloSkeletonArgs +class SkeletonArgs { public: @@ -41,7 +41,7 @@ class HelloSkeletonArgs int rank; // MPI rank unsigned int nproc; // number of processors - HelloSkeletonArgs(bool isWriter, int argc, char *argv[], int rank, int nproc); + SkeletonArgs(bool isWriter, int argc, char *argv[], int rank, int nproc); void DecomposeArray(size_t NX, size_t NY); }; diff --git a/examples/hello/skeleton/HelloSkeletonPrint.h b/examples/hello/skeleton/SkeletonPrint.h similarity index 100% rename from examples/hello/skeleton/HelloSkeletonPrint.h rename to examples/hello/skeleton/SkeletonPrint.h diff --git a/examples/hello/skeleton/hello_bpfile.xml b/examples/hello/skeleton/bpfile.xml similarity index 97% rename from examples/hello/skeleton/hello_bpfile.xml rename to examples/hello/skeleton/bpfile.xml index aeb255fd93..f46b17d38b 100644 --- a/examples/hello/skeleton/hello_bpfile.xml +++ b/examples/hello/skeleton/bpfile.xml @@ -1,6 +1,6 @@ diff --git a/examples/hello/skeleton/hello_skeleton.xml b/examples/hello/skeleton/skeleton.xml similarity index 96% rename from examples/hello/skeleton/hello_skeleton.xml rename to examples/hello/skeleton/skeleton.xml index bbca561454..ed9ad58b9c 100644 --- a/examples/hello/skeleton/hello_skeleton.xml +++ b/examples/hello/skeleton/skeleton.xml @@ -1,6 +1,6 @@ diff --git a/examples/hello/skeleton/helloSkeletonReader.cpp b/examples/hello/skeleton/skeletonReader.cpp similarity index 93% rename from examples/hello/skeleton/helloSkeletonReader.cpp rename to examples/hello/skeleton/skeletonReader.cpp index 5744647b2a..87a070f004 100644 --- a/examples/hello/skeleton/helloSkeletonReader.cpp +++ b/examples/hello/skeleton/skeletonReader.cpp @@ -1,3 +1,8 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + */ + #include #include //std::ios_base::failure #include //std::cout @@ -6,8 +11,8 @@ #include -#include "HelloSkeletonArgs.h" -#include "HelloSkeletonPrint.h" +#include "SkeletonArgs.h" +#include "SkeletonPrint.h" int main(int argc, char *argv[]) { @@ -32,7 +37,7 @@ int main(int argc, char *argv[]) try { - HelloSkeletonArgs settings(false, argc, argv, rank, nproc); + SkeletonArgs settings(false, argc, argv, rank, nproc); /** ADIOS class factory of IO class objects, Debug is ON by default */ #if ADIOS2_USE_MPI diff --git a/examples/hello/skeleton/helloSkeletonWriter.cpp b/examples/hello/skeleton/skeletonWriter.cpp similarity index 93% rename from examples/hello/skeleton/helloSkeletonWriter.cpp rename to examples/hello/skeleton/skeletonWriter.cpp index 407fe967dc..0eb1d43638 100644 --- a/examples/hello/skeleton/helloSkeletonWriter.cpp +++ b/examples/hello/skeleton/skeletonWriter.cpp @@ -13,7 +13,7 @@ #include #include -#include "HelloSkeletonArgs.h" +#include "SkeletonArgs.h" #include @@ -40,7 +40,7 @@ int main(int argc, char *argv[]) try { - HelloSkeletonArgs settings(true, argc, argv, rank, nproc); + SkeletonArgs settings(true, argc, argv, rank, nproc); std::vector myArray(settings.ndx * settings.ndy); @@ -65,7 +65,7 @@ int main(int argc, char *argv[]) { for (size_t i = 0; i < settings.ndx; ++i) { - myArray[idx] = rank + (step / 100.0f); + myArray[idx] = static_cast(rank) + (static_cast(step) / 100.0f); ++idx; } } diff --git a/examples/hello/sstReader/CMakeLists.txt b/examples/hello/sstReader/CMakeLists.txt index eff30267d5..39a0b615c0 100644 --- a/examples/hello/sstReader/CMakeLists.txt +++ b/examples/hello/sstReader/CMakeLists.txt @@ -3,10 +3,35 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(hello_sstReader helloSstReader.cpp) -target_link_libraries(hello_sstReader adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloSstReaderExample) -if(ADIOS2_HAVE_MPI) - add_executable(hello_sstReader_mpi helloSstReader.cpp) - target_link_libraries(hello_sstReader_mpi adios2::cxx11_mpi MPI::MPI_C) +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + if(NOT WIN32) + find_package(LIBFABRIC 1.6 QUIET) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_SST) + add_executable(adios2_hello_sstReader sstReader.cpp) + target_link_libraries(adios2_hello_sstReader adios2::cxx11) + install(TARGETS adios2_hello_sstReader RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + if(ADIOS2_HAVE_MPI) + add_executable(adios2_hello_sstReader_mpi sstReader.cpp) + target_link_libraries(adios2_hello_sstReader_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_sstReader_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + endif() endif() diff --git a/examples/hello/sstReader/helloSstReader.cpp b/examples/hello/sstReader/sstReader.cpp similarity index 97% rename from examples/hello/sstReader/helloSstReader.cpp rename to examples/hello/sstReader/sstReader.cpp index 8dfcb1ba0c..56630b3eea 100644 --- a/examples/hello/sstReader/helloSstReader.cpp +++ b/examples/hello/sstReader/sstReader.cpp @@ -2,10 +2,10 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloSstReader.cpp + * sstReader.cpp * * Created on: Aug 17, 2017 -v * Author: Greg Eisenhauer + * Author: Greg Eisenhauer */ #include diff --git a/examples/hello/sstWriter/CMakeLists.txt b/examples/hello/sstWriter/CMakeLists.txt index 637e00bfd4..f5adca3e58 100644 --- a/examples/hello/sstWriter/CMakeLists.txt +++ b/examples/hello/sstWriter/CMakeLists.txt @@ -3,10 +3,35 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(hello_sstWriter helloSstWriter.cpp) -target_link_libraries(hello_sstWriter adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloSstWriterExample) -if(ADIOS2_HAVE_MPI) - add_executable(hello_sstWriter_mpi helloSstWriter.cpp) - target_link_libraries(hello_sstWriter_mpi adios2::cxx11_mpi MPI::MPI_C) +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + if (NOT WIN32) + find_package(LIBFABRIC 1.6 QUIET) + endif () + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_SST) + add_executable(adios2_hello_sstWriter sstWriter.cpp) + target_link_libraries(adios2_hello_sstWriter adios2::cxx11) + install(TARGETS adios2_hello_sstWriter RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + if(ADIOS2_HAVE_MPI) + add_executable(adios2_hello_sstWriter_mpi sstWriter.cpp) + target_link_libraries(adios2_hello_sstWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_sstWriter_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + endif() endif() diff --git a/examples/hello/sstWriter/helloSstWriter.cpp b/examples/hello/sstWriter/sstWriter.cpp similarity index 81% rename from examples/hello/sstWriter/helloSstWriter.cpp rename to examples/hello/sstWriter/sstWriter.cpp index e4c58b1b17..02d4981171 100644 --- a/examples/hello/sstWriter/helloSstWriter.cpp +++ b/examples/hello/sstWriter/sstWriter.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * helloSstWriter.cpp + * sstWriter.cpp * * Created on: Aug 17, 2017 * Author: Greg Eisenhauer @@ -35,11 +35,12 @@ int main(int argc, char *argv[]) size = 1; #endif - std::vector myFloats = {(float)10.0 * rank + 0, (float)10.0 * rank + 1, - (float)10.0 * rank + 2, (float)10.0 * rank + 3, - (float)10.0 * rank + 4, (float)10.0 * rank + 5, - (float)10.0 * rank + 6, (float)10.0 * rank + 7, - (float)10.0 * rank + 8, (float)10.0 * rank + 9}; + std::vector myFloats = { + static_cast(10.0 * rank + 0), static_cast(10.0 * rank + 1), + static_cast(10.0 * rank + 2), static_cast(10.0 * rank + 3), + static_cast(10.0 * rank + 4), static_cast(10.0 * rank + 5), + static_cast(10.0 * rank + 6), static_cast(10.0 * rank + 7), + static_cast(10.0 * rank + 8), static_cast(10.0 * rank + 9)}; const std::size_t Nx = myFloats.size(); try diff --git a/examples/hello/sstWriter/helloSstWriter.py b/examples/hello/sstWriter/sstWriter.py similarity index 72% rename from examples/hello/sstWriter/helloSstWriter.py rename to examples/hello/sstWriter/sstWriter.py index 99508627ad..08a7a8270a 100644 --- a/examples/hello/sstWriter/helloSstWriter.py +++ b/examples/hello/sstWriter/sstWriter.py @@ -12,13 +12,13 @@ # ADIOS IO sstIO = adios.DeclareIO("myIO") -sstIO.SetEngine('Sst') -myArray = np.array([0.0, 1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0], - dtype='f') +sstIO.SetEngine("Sst") +myArray = np.array([0.0, 1.0, 2.0, 3.0, 4.0, 5.0, 6.0, 7.0, 8.0, 9.0], dtype="f") myArray = 10.0 * rank + myArray nx = len(myArray) -ioArray = sstIO.DefineVariable("bpFloats", myArray, [size * nx], - [rank * nx], [nx], adios2.ConstantDims) +ioArray = sstIO.DefineVariable( + "bpFloats", myArray, [size * nx], [rank * nx], [nx], adios2.ConstantDims +) sstFileWriter = sstIO.Open("helloSst", adios2.Mode.Write) sstFileWriter.BeginStep() sstFileWriter.Put(ioArray, myArray, adios2.Mode.Sync) diff --git a/examples/inlineMWE/CMakeLists.txt b/examples/inlineMWE/CMakeLists.txt deleted file mode 100644 index 3773d2d3f7..0000000000 --- a/examples/inlineMWE/CMakeLists.txt +++ /dev/null @@ -1,7 +0,0 @@ -#------------------------------------------------------------------------------# -# Distributed under the OSI-approved Apache License, Version 2.0. See -# accompanying file Copyright.txt for details. -#------------------------------------------------------------------------------# - -add_executable(inlineMWE inlineMWE.cpp) -target_link_libraries(inlineMWE adios2::cxx11) diff --git a/examples/plugins/CMakeLists.txt b/examples/plugins/CMakeLists.txt index 5fed9662d6..013d696b17 100644 --- a/examples/plugins/CMakeLists.txt +++ b/examples/plugins/CMakeLists.txt @@ -4,4 +4,6 @@ #------------------------------------------------------------------------------# add_subdirectory(engine) -add_subdirectory(operator) +if(ADIOS2_HAVE_Sodium) + add_subdirectory(operator) +endif() diff --git a/examples/plugins/engine/CMakeLists.txt b/examples/plugins/engine/CMakeLists.txt index a611c0b8b7..d902043a83 100644 --- a/examples/plugins/engine/CMakeLists.txt +++ b/examples/plugins/engine/CMakeLists.txt @@ -3,33 +3,39 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# +cmake_minimum_required(VERSION 3.12) +project(ADIOS2PluginsEngineExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + include(GenerateExportHeader) -add_library(PluginEngineWrite - ExampleWritePlugin.cpp -) -target_link_libraries(PluginEngineWrite adios2::cxx11 adios2_core) -generate_export_header(PluginEngineWrite BASE_NAME plugin_engine_write) -target_include_directories(PluginEngineWrite PUBLIC + +add_library(adios2_plugins_exampleWritePlugin ExampleWritePlugin.cpp) +target_link_libraries(adios2_plugins_exampleWritePlugin adios2::cxx11 adios2_core) +generate_export_header(adios2_plugins_exampleWritePlugin BASE_NAME plugin_engine_write) +target_include_directories(adios2_plugins_exampleWritePlugin PUBLIC $ $ ) +install(TARGETS adios2_plugins_exampleWritePlugin RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) -add_library(PluginEngineRead - ExampleReadPlugin.cpp -) -target_link_libraries(PluginEngineRead adios2::cxx11 adios2_core) -generate_export_header(PluginEngineRead BASE_NAME plugin_engine_read) -target_include_directories(PluginEngineRead PUBLIC +add_library(adios2_plugins_exampleReadPlugin ExampleReadPlugin.cpp) +target_link_libraries(adios2_plugins_exampleReadPlugin adios2::cxx11 adios2_core) +generate_export_header(adios2_plugins_exampleReadPlugin BASE_NAME plugin_engine_read) +target_include_directories(adios2_plugins_exampleReadPlugin PUBLIC $ $ ) +install(TARGETS adios2_plugins_exampleReadPlugin RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) -add_executable(examplePluginEngine_write - examplePluginEngine_write.cpp -) -target_link_libraries(examplePluginEngine_write adios2::cxx11) +add_executable(adios2_plugins_examplePluginEngineWrite examplePluginEngineWrite.cpp) +target_link_libraries(adios2_plugins_examplePluginEngineWrite adios2::cxx11) +install(TARGETS adios2_plugins_examplePluginEngineWrite RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) -add_executable(examplePluginEngine_read - examplePluginEngine_read.cpp -) -target_link_libraries(examplePluginEngine_read adios2::cxx11) +add_executable(adios2_plugins_examplePluginEngineRead examplePluginEngineRead.cpp) +target_link_libraries(adios2_plugins_examplePluginEngineRead adios2::cxx11) +install(TARGETS adios2_plugins_examplePluginEngineRead RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) diff --git a/examples/plugins/engine/examplePluginEngine_read.cpp b/examples/plugins/engine/examplePluginEngineRead.cpp similarity index 97% rename from examples/plugins/engine/examplePluginEngine_read.cpp rename to examples/plugins/engine/examplePluginEngineRead.cpp index 17042868dc..684ea561c1 100644 --- a/examples/plugins/engine/examplePluginEngine_read.cpp +++ b/examples/plugins/engine/examplePluginEngineRead.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * examplePluginEngine_read.cpp example showing how to use ExampleReadPlugin + * examplePluginEngineRead.cpp example showing how to use ExampleReadPlugin * engine * * Created on: July 5, 2021 diff --git a/examples/plugins/engine/examplePluginEngine_write.cpp b/examples/plugins/engine/examplePluginEngineWrite.cpp similarity index 97% rename from examples/plugins/engine/examplePluginEngine_write.cpp rename to examples/plugins/engine/examplePluginEngineWrite.cpp index bb6f6f51b9..3d142d36c6 100644 --- a/examples/plugins/engine/examplePluginEngine_write.cpp +++ b/examples/plugins/engine/examplePluginEngineWrite.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * examplePluginEngine_write.cpp example showing how to use ExampleWritePlugin + * examplePluginEngineWrite.cpp example showing how to use ExampleWritePlugin * engine * * Created on: July 5, 2021 diff --git a/examples/plugins/engine/example_engine.xml b/examples/plugins/engine/example_engine.xml index 412c1a9684..46393a70d7 100644 --- a/examples/plugins/engine/example_engine.xml +++ b/examples/plugins/engine/example_engine.xml @@ -10,7 +10,7 @@ - + @@ -22,7 +22,7 @@ - + diff --git a/examples/plugins/operator/CMakeLists.txt b/examples/plugins/operator/CMakeLists.txt index 8881bb8f16..f71e6dca20 100644 --- a/examples/plugins/operator/CMakeLists.txt +++ b/examples/plugins/operator/CMakeLists.txt @@ -2,12 +2,24 @@ # Distributed under the OSI-approved Apache License, Version 2.0. See # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(exampleOperatorPlugin_write - examplePluginOperator_write.cpp -) -target_link_libraries(exampleOperatorPlugin_write adios2::cxx11) - -add_executable(exampleOperatorPlugin_read - examplePluginOperator_read.cpp -) -target_link_libraries(exampleOperatorPlugin_read adios2::cxx11) + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2PluginsOperatorExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(Sodium QUIET) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_Sodium) + add_executable(adios2_plugins_exampleOperatorPluginWrite examplePluginOperatorWrite.cpp) + target_link_libraries(adios2_plugins_exampleOperatorPluginWrite adios2::cxx11) + install(TARGETS adios2_plugins_exampleOperatorPluginWrite RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_executable(adios2_plugins_exampleOperatorPluginRead examplePluginOperatorRead.cpp) + target_link_libraries(adios2_plugins_exampleOperatorPluginRead adios2::cxx11) + install(TARGETS adios2_plugins_exampleOperatorPluginRead RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif() \ No newline at end of file diff --git a/examples/plugins/operator/examplePluginOperator_read.cpp b/examples/plugins/operator/examplePluginOperatorRead.cpp similarity index 97% rename from examples/plugins/operator/examplePluginOperator_read.cpp rename to examples/plugins/operator/examplePluginOperatorRead.cpp index 01e47e92a5..e48fff3b74 100644 --- a/examples/plugins/operator/examplePluginOperator_read.cpp +++ b/examples/plugins/operator/examplePluginOperatorRead.cpp @@ -2,7 +2,7 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * examplePluginOperator_read.cpp example showing how to use EncryptionOperator + * examplePluginOperatorRead.cpp example showing how to use EncryptionOperator * plugin * * Created on: July 5, 2021 diff --git a/examples/plugins/operator/examplePluginOperator_write.cpp b/examples/plugins/operator/examplePluginOperatorWrite.cpp similarity index 100% rename from examples/plugins/operator/examplePluginOperator_write.cpp rename to examples/plugins/operator/examplePluginOperatorWrite.cpp diff --git a/examples/query/CMakeLists.txt b/examples/query/CMakeLists.txt deleted file mode 100644 index 444dda6fef..0000000000 --- a/examples/query/CMakeLists.txt +++ /dev/null @@ -1,10 +0,0 @@ -#------------------------------------------------------------------------------# -# Distributed under the OSI-approved Apache License, Version 2.0. See -# accompanying file Copyright.txt for details. -#------------------------------------------------------------------------------# - -if(ADIOS2_HAVE_MPI) - add_executable(queryTest test.cpp) - target_link_libraries(queryTest adios2::cxx11_mpi MPI::MPI_C) -endif() - diff --git a/examples/simulations/CMakeLists.txt b/examples/simulations/CMakeLists.txt new file mode 100644 index 0000000000..93f7e8c70c --- /dev/null +++ b/examples/simulations/CMakeLists.txt @@ -0,0 +1,3 @@ +if(ADIOS2_HAVE_MPI) + add_subdirectory(heatTransfer) +endif() diff --git a/examples/heatTransfer/CMakeLists.txt b/examples/simulations/heatTransfer/CMakeLists.txt similarity index 75% rename from examples/heatTransfer/CMakeLists.txt rename to examples/simulations/heatTransfer/CMakeLists.txt index 48a07f6fd2..7b00974587 100644 --- a/examples/heatTransfer/CMakeLists.txt +++ b/examples/simulations/heatTransfer/CMakeLists.txt @@ -3,7 +3,10 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_subdirectory(write) -add_subdirectory(read) -add_subdirectory(read_fileonly) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2SimulationsHeatTransferExample) + add_subdirectory(inline) +add_subdirectory(read) +add_subdirectory(readFileOnly) +add_subdirectory(write) diff --git a/examples/heatTransfer/ReadMe.md b/examples/simulations/heatTransfer/ReadMe.md similarity index 75% rename from examples/heatTransfer/ReadMe.md rename to examples/simulations/heatTransfer/ReadMe.md index 9ad00c1681..a378c72f96 100644 --- a/examples/heatTransfer/ReadMe.md +++ b/examples/simulations/heatTransfer/ReadMe.md @@ -1,4 +1,4 @@ -examples/heatTransfer +### heatTransfer example This example solves a 2D Poisson equation for temperature in homogeneous media using finite differences. This examples shows a straight-forward way to hook @@ -7,7 +7,7 @@ an application to the ADIOS2 library for its IO. 1. write: illustrates the Write API as well as has implementations of other IO libraries - * adios 1.x + * adios 2 * hdf5 sequential, separate file per process per step * phdf5 parallel, steps appended to the same one file @@ -17,7 +17,7 @@ an application to the ADIOS2 library for its IO. * in situ to read step by step as the writer outputs them (need to run with a suitable engine) -3. read_fileonly: illustrates reading all output steps at once (a single read +3. readFileOnly: illustrates reading all output steps at once (a single read statement) into a single contiguous memory block. This approach only works for post-mortem processing. @@ -38,12 +38,12 @@ Writer usage: heatTransfer config output N M nx ny steps iterations steps: the total number of steps to output iterations: one step consist of this many iterations -The ADIOS2 executable needs an XML config file to select the Engine used for the output. The engines are: File, BP4 and HDF5, the corresponding XML config files are in the examples/heatTransfer/ directory. The "File" engine will be BP4 or HDF5 depending on the extension of the file name. +The ADIOS2 executable needs an XML config file to select the Engine used for the output. The engines are: File, BP4 and HDF5, the corresponding XML config files are in the examples/simulations/heatTransfer/ directory. The "File" engine will be BP4 or HDF5 depending on the extension of the file name. The adios1, ph5 and hdf5 versions of the example do not use XML config files, so just type "none" for the config argument. -$ mpirun -np 12 ./bin/heatTransfer_write_adios2 ../examples/heatTransfer/heat_file.xml heat.bp 4 3 5 10 10 10 -$ mpirun -np 12 ./bin/heatTransfer_write_adios2 ../examples/heatTransfer/heat_file.xml heat.h5 4 3 5 10 10 10 +$ mpirun -np 12 ./bin/adios2_simulations_heatTransferWrite ../examples/simulations/heatTransfer/heat_file.xml heat.bp 4 3 5 10 10 10 +$ mpirun -np 12 ./bin/adios2_simulations_heatTransferWrite ../examples/simulations/heatTransfer/heat_file.xml heat.h5 4 3 5 10 10 10 2. Read the output step-by-step and print data into text files (data. per reader process) @@ -55,7 +55,7 @@ Reader Usage: heatRead config input N M M: number of processes in Y dimension -$ mpirun -np 2 ./bin/heatTransfer_read ../examples/heatTransfer/heat_file.xml heat 2 1 +$ mpirun -np 2 ./bin/heatTransfer_read ../examples/simulations/heatTransfer/heat_file.xml heat 2 1 Notes: diff --git a/examples/heatTransfer/heat_bp3.xml b/examples/simulations/heatTransfer/heat_bp3.xml similarity index 97% rename from examples/heatTransfer/heat_bp3.xml rename to examples/simulations/heatTransfer/heat_bp3.xml index 6b004a3c6d..bc5e91fc53 100644 --- a/examples/heatTransfer/heat_bp3.xml +++ b/examples/simulations/heatTransfer/heat_bp3.xml @@ -1,7 +1,7 @@ diff --git a/examples/heatTransfer/heat_bp3_zfp.xml b/examples/simulations/heatTransfer/heat_bp3_zfp.xml similarity index 98% rename from examples/heatTransfer/heat_bp3_zfp.xml rename to examples/simulations/heatTransfer/heat_bp3_zfp.xml index b2220e480a..ab7fc71756 100644 --- a/examples/heatTransfer/heat_bp3_zfp.xml +++ b/examples/simulations/heatTransfer/heat_bp3_zfp.xml @@ -1,7 +1,7 @@ diff --git a/examples/heatTransfer/heat_bp4.xml b/examples/simulations/heatTransfer/heat_bp4.xml similarity index 97% rename from examples/heatTransfer/heat_bp4.xml rename to examples/simulations/heatTransfer/heat_bp4.xml index 5373aa9fca..dd7ba50541 100644 --- a/examples/heatTransfer/heat_bp4.xml +++ b/examples/simulations/heatTransfer/heat_bp4.xml @@ -1,7 +1,7 @@ diff --git a/examples/heatTransfer/heat_bp4_zfp.xml b/examples/simulations/heatTransfer/heat_bp4_zfp.xml similarity index 98% rename from examples/heatTransfer/heat_bp4_zfp.xml rename to examples/simulations/heatTransfer/heat_bp4_zfp.xml index f7401bc5de..b6af72c1ce 100644 --- a/examples/heatTransfer/heat_bp4_zfp.xml +++ b/examples/simulations/heatTransfer/heat_bp4_zfp.xml @@ -1,7 +1,7 @@ diff --git a/examples/heatTransfer/heat_dataman.xml b/examples/simulations/heatTransfer/heat_dataman.xml similarity index 97% rename from examples/heatTransfer/heat_dataman.xml rename to examples/simulations/heatTransfer/heat_dataman.xml index e7cbddb66a..dc5164e8d5 100644 --- a/examples/heatTransfer/heat_dataman.xml +++ b/examples/simulations/heatTransfer/heat_dataman.xml @@ -1,7 +1,7 @@ diff --git a/examples/heatTransfer/heat_dataspaces.xml b/examples/simulations/heatTransfer/heat_dataspaces.xml similarity index 91% rename from examples/heatTransfer/heat_dataspaces.xml rename to examples/simulations/heatTransfer/heat_dataspaces.xml index 3d8fabe929..690436b548 100644 --- a/examples/heatTransfer/heat_dataspaces.xml +++ b/examples/simulations/heatTransfer/heat_dataspaces.xml @@ -1,7 +1,7 @@ diff --git a/examples/heatTransfer/heat_file.xml b/examples/simulations/heatTransfer/heat_file.xml similarity index 97% rename from examples/heatTransfer/heat_file.xml rename to examples/simulations/heatTransfer/heat_file.xml index b5bd9a970e..1a2392301e 100644 --- a/examples/heatTransfer/heat_file.xml +++ b/examples/simulations/heatTransfer/heat_file.xml @@ -1,7 +1,7 @@ diff --git a/examples/heatTransfer/heat_hdf5.xml b/examples/simulations/heatTransfer/heat_hdf5.xml similarity index 97% rename from examples/heatTransfer/heat_hdf5.xml rename to examples/simulations/heatTransfer/heat_hdf5.xml index a4abcf1290..334b9841f4 100644 --- a/examples/heatTransfer/heat_hdf5.xml +++ b/examples/simulations/heatTransfer/heat_hdf5.xml @@ -1,7 +1,7 @@ diff --git a/examples/heatTransfer/heat_inline.xml b/examples/simulations/heatTransfer/heat_inline.xml similarity index 96% rename from examples/heatTransfer/heat_inline.xml rename to examples/simulations/heatTransfer/heat_inline.xml index 7de2cb351b..e01923f265 100644 --- a/examples/heatTransfer/heat_inline.xml +++ b/examples/simulations/heatTransfer/heat_inline.xml @@ -1,6 +1,6 @@ diff --git a/examples/heatTransfer/heat_ssc.xml b/examples/simulations/heatTransfer/heat_ssc.xml similarity index 94% rename from examples/heatTransfer/heat_ssc.xml rename to examples/simulations/heatTransfer/heat_ssc.xml index 5f37add34b..435b12df9f 100644 --- a/examples/heatTransfer/heat_ssc.xml +++ b/examples/simulations/heatTransfer/heat_ssc.xml @@ -1,7 +1,7 @@ diff --git a/examples/heatTransfer/heat_sst_bp_rdma.xml b/examples/simulations/heatTransfer/heat_sst_bp_rdma.xml similarity index 92% rename from examples/heatTransfer/heat_sst_bp_rdma.xml rename to examples/simulations/heatTransfer/heat_sst_bp_rdma.xml index a324215006..9c321e76b5 100644 --- a/examples/heatTransfer/heat_sst_bp_rdma.xml +++ b/examples/simulations/heatTransfer/heat_sst_bp_rdma.xml @@ -1,7 +1,7 @@ diff --git a/examples/heatTransfer/heat_sst_ffs.xml b/examples/simulations/heatTransfer/heat_sst_ffs.xml similarity index 91% rename from examples/heatTransfer/heat_sst_ffs.xml rename to examples/simulations/heatTransfer/heat_sst_ffs.xml index 1e8712cf93..6332d8e46e 100644 --- a/examples/heatTransfer/heat_sst_ffs.xml +++ b/examples/simulations/heatTransfer/heat_sst_ffs.xml @@ -1,7 +1,7 @@ diff --git a/examples/heatTransfer/heat_sst_ffs_rdma.xml b/examples/simulations/heatTransfer/heat_sst_ffs_rdma.xml similarity index 92% rename from examples/heatTransfer/heat_sst_ffs_rdma.xml rename to examples/simulations/heatTransfer/heat_sst_ffs_rdma.xml index ed2b0be094..08a0844b54 100644 --- a/examples/heatTransfer/heat_sst_ffs_rdma.xml +++ b/examples/simulations/heatTransfer/heat_sst_ffs_rdma.xml @@ -1,7 +1,7 @@ diff --git a/examples/simulations/heatTransfer/inline/CMakeLists.txt b/examples/simulations/heatTransfer/inline/CMakeLists.txt new file mode 100644 index 0000000000..4e41311ce9 --- /dev/null +++ b/examples/simulations/heatTransfer/inline/CMakeLists.txt @@ -0,0 +1,34 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2SimulationsHeatTransferInlineExample) + +if(NOT TARGET adios2_core) + set(_components C CXX) + + find_package(MPI COMPONENTS ${_components}) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(Threads QUIET) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_MPI AND Threads_FOUND) + add_executable(adios2_simulations_heatTransferInline + main.cpp + InlineIO.cpp + ../write/HeatTransfer.cpp + ../write/Settings.cpp + ) + target_link_libraries(adios2_simulations_heatTransferInline adios2::cxx11_mpi MPI::MPI_C ${CMAKE_THREAD_LIBS_INIT}) + install(TARGETS adios2_simulations_heatTransferInline RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif() diff --git a/examples/heatTransfer/inline/InlineIO.cpp b/examples/simulations/heatTransfer/inline/InlineIO.cpp similarity index 100% rename from examples/heatTransfer/inline/InlineIO.cpp rename to examples/simulations/heatTransfer/inline/InlineIO.cpp diff --git a/examples/heatTransfer/inline/InlineIO.h b/examples/simulations/heatTransfer/inline/InlineIO.h similarity index 100% rename from examples/heatTransfer/inline/InlineIO.h rename to examples/simulations/heatTransfer/inline/InlineIO.h diff --git a/examples/heatTransfer/inline/main.cpp b/examples/simulations/heatTransfer/inline/main.cpp similarity index 100% rename from examples/heatTransfer/inline/main.cpp rename to examples/simulations/heatTransfer/inline/main.cpp diff --git a/examples/simulations/heatTransfer/read/CMakeLists.txt b/examples/simulations/heatTransfer/read/CMakeLists.txt new file mode 100644 index 0000000000..fcc241a2fe --- /dev/null +++ b/examples/simulations/heatTransfer/read/CMakeLists.txt @@ -0,0 +1,31 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2SimulationsHeatTransferReadExample) + +if(NOT TARGET adios2_core) + set(_components C CXX) + + find_package(MPI COMPONENTS ${_components}) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_MPI) + add_executable(adios2_simulations_heatTransferRead + heatRead.cpp + PrintDataStep.h + ReadSettings.cpp + ) + target_link_libraries(adios2_simulations_heatTransferRead adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_simulations_heatTransferRead RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif() diff --git a/examples/heatTransfer/read/PrintDataStep.h b/examples/simulations/heatTransfer/read/PrintDataStep.h similarity index 100% rename from examples/heatTransfer/read/PrintDataStep.h rename to examples/simulations/heatTransfer/read/PrintDataStep.h diff --git a/examples/heatTransfer/read/ReadSettings.cpp b/examples/simulations/heatTransfer/read/ReadSettings.cpp similarity index 100% rename from examples/heatTransfer/read/ReadSettings.cpp rename to examples/simulations/heatTransfer/read/ReadSettings.cpp diff --git a/examples/heatTransfer/read/ReadSettings.h b/examples/simulations/heatTransfer/read/ReadSettings.h similarity index 100% rename from examples/heatTransfer/read/ReadSettings.h rename to examples/simulations/heatTransfer/read/ReadSettings.h diff --git a/examples/heatTransfer/read/heatRead.cpp b/examples/simulations/heatTransfer/read/heatRead.cpp similarity index 100% rename from examples/heatTransfer/read/heatRead.cpp rename to examples/simulations/heatTransfer/read/heatRead.cpp diff --git a/examples/simulations/heatTransfer/readFileOnly/CMakeLists.txt b/examples/simulations/heatTransfer/readFileOnly/CMakeLists.txt new file mode 100644 index 0000000000..5cb5dd3c4d --- /dev/null +++ b/examples/simulations/heatTransfer/readFileOnly/CMakeLists.txt @@ -0,0 +1,27 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2SimulationsHeatTransferReadFileOnlyExample) + +if(NOT TARGET adios2_core) + set(_components C CXX) + + find_package(MPI COMPONENTS ${_components}) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_MPI) + add_executable(adios2_simulations_heatTransferReadFileOnly heatReadFileOnly.cpp PrintData.h) + target_link_libraries(adios2_simulations_heatTransferReadFileOnly adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_simulations_heatTransferReadFileOnly RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif () diff --git a/examples/heatTransfer/read_fileonly/PrintData.h b/examples/simulations/heatTransfer/readFileOnly/PrintData.h similarity index 100% rename from examples/heatTransfer/read_fileonly/PrintData.h rename to examples/simulations/heatTransfer/readFileOnly/PrintData.h diff --git a/examples/heatTransfer/read_fileonly/heatRead_adios2.cpp b/examples/simulations/heatTransfer/readFileOnly/heatReadFileOnly.cpp similarity index 96% rename from examples/heatTransfer/read_fileonly/heatRead_adios2.cpp rename to examples/simulations/heatTransfer/readFileOnly/heatReadFileOnly.cpp index af7d6dfb5e..28ba45d18e 100644 --- a/examples/heatTransfer/read_fileonly/heatRead_adios2.cpp +++ b/examples/simulations/heatTransfer/readFileOnly/heatReadFileOnly.cpp @@ -1,15 +1,14 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + */ #include #include "adios2.h" #include -#include #include -#include -#include -#include -#include #include #include "PrintData.h" diff --git a/examples/simulations/heatTransfer/write/CMakeLists.txt b/examples/simulations/heatTransfer/write/CMakeLists.txt new file mode 100644 index 0000000000..7f1378c982 --- /dev/null +++ b/examples/simulations/heatTransfer/write/CMakeLists.txt @@ -0,0 +1,81 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2SimulationsHeatTransferWriteExample) + +if(NOT TARGET adios2_core) + set(_components C CXX) + + find_package(MPI COMPONENTS ${_components}) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(Threads QUIET) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if (ADIOS2_HAVE_MPI AND Threads_FOUND) + add_executable(adios2_simulations_heatTransferWrite + main.cpp + HeatTransfer.cpp + Settings.cpp + IO_adios2.cpp + ) + target_link_libraries(adios2_simulations_heatTransferWrite adios2::cxx11_mpi MPI::MPI_C ${CMAKE_THREAD_LIBS_INIT}) + install(TARGETS adios2_simulations_heatTransferWrite RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_executable(adios2_simulations_heatTransferWrite_ascii + main.cpp + HeatTransfer.cpp + Settings.cpp + IO_ascii.cpp + ) + target_link_libraries(adios2_simulations_heatTransferWrite_ascii MPI::MPI_C ${CMAKE_THREAD_LIBS_INIT}) + install(TARGETS adios2_simulations_heatTransferWrite_ascii RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + if(ADIOS2_HAVE_HDF5) + add_executable(adios2_simulations_heatTransferWrite_hdf5 + main.cpp + HeatTransfer.cpp + Settings.cpp + IO_hdf5_a.cpp + ) + target_include_directories(adios2_simulations_heatTransferWrite_hdf5 PRIVATE ${HDF5_C_INCLUDE_DIRS}) + target_link_libraries(adios2_simulations_heatTransferWrite_hdf5 + ${HDF5_C_LIBRARIES} MPI::MPI_C ${CMAKE_THREAD_LIBS_INIT}) + install(TARGETS adios2_simulations_heatTransferWrite_hdf5 RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + if(HDF5_IS_PARALLEL) + add_executable(adios2_simulations_heatTransferWrite_ph5 + main.cpp + HeatTransfer.cpp + Settings.cpp + IO_ph5.cpp + ) + target_include_directories(adios2_simulations_heatTransferWrite_ph5 PRIVATE ${HDF5_C_INCLUDE_DIRS}) + target_link_libraries(adios2_simulations_heatTransferWrite_ph5 + ${HDF5_C_LIBRARIES} MPI::MPI_C ${CMAKE_THREAD_LIBS_INIT}) + install(TARGETS adios2_simulations_heatTransferWrite_ph5 RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + endif() + + if(NOT (HDF5_VERSION VERSION_LESS 1.11)) + add_executable(adios2_simulations_heatTransferWrite_h5mixer + main.cpp + HeatTransfer.cpp + Settings.cpp + IO_h5mixer.cpp + ) + target_link_libraries(adios2_simulations_heatTransferWrite_h5mixer + adios2::cxx11_mpi MPI::MPI_C ${CMAKE_THREAD_LIBS_INIT}) + install(TARGETS adios2_simulations_heatTransferWrite_h5mixer RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + endif() + endif() +endif() diff --git a/examples/heatTransfer/write/HeatTransfer.cpp b/examples/simulations/heatTransfer/write/HeatTransfer.cpp similarity index 100% rename from examples/heatTransfer/write/HeatTransfer.cpp rename to examples/simulations/heatTransfer/write/HeatTransfer.cpp diff --git a/examples/heatTransfer/write/HeatTransfer.h b/examples/simulations/heatTransfer/write/HeatTransfer.h similarity index 100% rename from examples/heatTransfer/write/HeatTransfer.h rename to examples/simulations/heatTransfer/write/HeatTransfer.h diff --git a/examples/heatTransfer/write/IO.h b/examples/simulations/heatTransfer/write/IO.h similarity index 100% rename from examples/heatTransfer/write/IO.h rename to examples/simulations/heatTransfer/write/IO.h diff --git a/examples/heatTransfer/write/IO_adios2.cpp b/examples/simulations/heatTransfer/write/IO_adios2.cpp similarity index 99% rename from examples/heatTransfer/write/IO_adios2.cpp rename to examples/simulations/heatTransfer/write/IO_adios2.cpp index b983f3a0bc..b33c2b55ff 100644 --- a/examples/heatTransfer/write/IO_adios2.cpp +++ b/examples/simulations/heatTransfer/write/IO_adios2.cpp @@ -12,7 +12,7 @@ #include -#include +#include "adios2.h" adios2::ADIOS ad; adios2::Engine bpWriter; diff --git a/examples/heatTransfer/write/IO_ascii.cpp b/examples/simulations/heatTransfer/write/IO_ascii.cpp similarity index 100% rename from examples/heatTransfer/write/IO_ascii.cpp rename to examples/simulations/heatTransfer/write/IO_ascii.cpp diff --git a/examples/heatTransfer/write/IO_h5mixer.cpp b/examples/simulations/heatTransfer/write/IO_h5mixer.cpp similarity index 100% rename from examples/heatTransfer/write/IO_h5mixer.cpp rename to examples/simulations/heatTransfer/write/IO_h5mixer.cpp diff --git a/examples/heatTransfer/write/IO_hdf5_a.cpp b/examples/simulations/heatTransfer/write/IO_hdf5_a.cpp similarity index 96% rename from examples/heatTransfer/write/IO_hdf5_a.cpp rename to examples/simulations/heatTransfer/write/IO_hdf5_a.cpp index 2546e03e23..4f2e54c693 100644 --- a/examples/heatTransfer/write/IO_hdf5_a.cpp +++ b/examples/simulations/heatTransfer/write/IO_hdf5_a.cpp @@ -49,7 +49,7 @@ void IO::write(int step, const HeatTransfer &ht, const Settings &s, MPI_Comm com double total_time = MPI_Wtime() - time_start; uint64_t adios_totalsize = 2 * sizeof(int) + 2 * s.ndx * s.ndy * sizeof(double); uint64_t sizeMB = adios_totalsize * s.nproc / 1024 / 1024 / 1024; // size in MB - double mbs = sizeMB / total_time; + double mbs = static_cast(sizeMB) / total_time; if (s.rank == 0) std::cout << "Step " << step << ": " << m_outputfilename << " " << sizeMB << " " << total_time << "" << mbs << std::endl; diff --git a/examples/heatTransfer/write/IO_ph5.cpp b/examples/simulations/heatTransfer/write/IO_ph5.cpp similarity index 100% rename from examples/heatTransfer/write/IO_ph5.cpp rename to examples/simulations/heatTransfer/write/IO_ph5.cpp diff --git a/examples/heatTransfer/write/Settings.cpp b/examples/simulations/heatTransfer/write/Settings.cpp similarity index 100% rename from examples/heatTransfer/write/Settings.cpp rename to examples/simulations/heatTransfer/write/Settings.cpp diff --git a/examples/heatTransfer/write/Settings.h b/examples/simulations/heatTransfer/write/Settings.h similarity index 100% rename from examples/heatTransfer/write/Settings.h rename to examples/simulations/heatTransfer/write/Settings.h diff --git a/examples/heatTransfer/write/main.cpp b/examples/simulations/heatTransfer/write/main.cpp similarity index 100% rename from examples/heatTransfer/write/main.cpp rename to examples/simulations/heatTransfer/write/main.cpp diff --git a/examples/useCases/CMakeLists.txt b/examples/useCases/CMakeLists.txt index f5de8aeacf..e53d930f80 100644 --- a/examples/useCases/CMakeLists.txt +++ b/examples/useCases/CMakeLists.txt @@ -3,5 +3,5 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# +add_subdirectory(fidesOneCell) add_subdirectory(insituGlobalArrays) - diff --git a/examples/useCases/fidesOneCell/CMakeLists.txt b/examples/useCases/fidesOneCell/CMakeLists.txt new file mode 100644 index 0000000000..d64277fc57 --- /dev/null +++ b/examples/useCases/fidesOneCell/CMakeLists.txt @@ -0,0 +1,17 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2UseCasesFidesOneCellExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +add_executable(adios2_useCases_fidesOneCell fidesOneCell.cpp) +target_link_libraries(adios2_useCases_fidesOneCell adios2::cxx11) +install(TARGETS adios2_useCases_fidesOneCell RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) diff --git a/examples/useCases/fidesOneCell/ReadMe.md b/examples/useCases/fidesOneCell/ReadMe.md new file mode 100644 index 0000000000..ef39aa28e0 --- /dev/null +++ b/examples/useCases/fidesOneCell/ReadMe.md @@ -0,0 +1,37 @@ +Single cell example for visualization with Fides schema in ParaView +------------------------------------------------------------------- + +This example writes 8 points in 3D space, the corners of a box, and then defines a single hexagon cell of those eight +points. +The coordinates of the points are stored in three 1D arrays, separating the X-Y-Z coordinates. + +The cell is the enumeration of the points connected in the order of a hexagon prescribed by VTK, see +Figure 19-20 in the VTK User Guide, type VTK_HEXAHEDRON in page 480 (page 494 in the PDF). +https://vtk.org/wp-content/uploads/2021/08/VTKUsersGuide.pdf + +The visualization schema is described in the fidesOneCell.json file, according +to https://fides.readthedocs.io/en/latest/schema/schema.html + +We compose the coordinate system as a composite of the three 1D arrays for X, Y and Z coordinates. This is just an +enumeration of the N points in space (N = size of X = size of Y = size of Z) , in contrast to other examples where X, Y, +Z is combined to specify a structured grid (number of points = size of X * size of Y * size of Z). + +In ParaView, one opens the fidesOneCell.json file and adds an property "source" with the value of the full path of the +onecell.bp. See left-middle Properties box in the ParaView window in the image paraview-onecell-step0.png. Then hit +Apply button and a gray box should appear (the single cell visualized). which can be rotated on screen. Then one must +color the box with the data ("pointdata") to get the pictures shown in the included images. + +Note that the dataset over the points is called "DataOnPoints" in the onecell.bp file, but it is called "pointdata" in +the Fides schema to demonstrate which name is which (ParaView presents pointdata to the user while reading the +DataOnPoints array from the file). + +First step of onecell.bp in ParaView: + +paraview-onecell-step0.png + +Last step of onecell.bp in ParaView: + +paraview-onecell-step9.png + diff --git a/examples/fides/01_onecell/fides_onecell.cpp b/examples/useCases/fidesOneCell/fidesOneCell.cpp similarity index 97% rename from examples/fides/01_onecell/fides_onecell.cpp rename to examples/useCases/fidesOneCell/fidesOneCell.cpp index d02c82750d..e012965fcc 100644 --- a/examples/fides/01_onecell/fides_onecell.cpp +++ b/examples/useCases/fidesOneCell/fidesOneCell.cpp @@ -85,7 +85,7 @@ int main(int argc, char *argv[]) writer.Put(varPointData, pointdata); writer.Put(varCellData, celldata); writer.Put(varStep, step); - writer.Put(varTime, step * 1.0); + writer.Put(varTime, static_cast(step)); writer.EndStep(); } diff --git a/examples/fides/01_onecell/fides_onecell.json b/examples/useCases/fidesOneCell/fidesOneCell.json similarity index 100% rename from examples/fides/01_onecell/fides_onecell.json rename to examples/useCases/fidesOneCell/fidesOneCell.json diff --git a/examples/fides/01_onecell/paraview-onecell-step0.png b/examples/useCases/fidesOneCell/paraview-onecell-step0.png similarity index 100% rename from examples/fides/01_onecell/paraview-onecell-step0.png rename to examples/useCases/fidesOneCell/paraview-onecell-step0.png diff --git a/examples/fides/01_onecell/paraview-onecell-step9.png b/examples/useCases/fidesOneCell/paraview-onecell-step9.png similarity index 100% rename from examples/fides/01_onecell/paraview-onecell-step9.png rename to examples/useCases/fidesOneCell/paraview-onecell-step9.png diff --git a/examples/useCases/insituGlobalArrays/CMakeLists.txt b/examples/useCases/insituGlobalArrays/CMakeLists.txt index 8ef3a1c205..281c687b7e 100644 --- a/examples/useCases/insituGlobalArrays/CMakeLists.txt +++ b/examples/useCases/insituGlobalArrays/CMakeLists.txt @@ -3,16 +3,38 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# -add_executable(insituGlobalArraysWriter insituGlobalArraysWriter.cpp) -target_link_libraries(insituGlobalArraysWriter adios2::cxx11) +cmake_minimum_required(VERSION 3.12) +project(ADIOS2UseCasesInSituGlobalArraysExample) -add_executable(insituGlobalArraysReaderNxN insituGlobalArraysReaderNxN.cpp) -target_link_libraries(insituGlobalArraysReaderNxN adios2::cxx11) +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + + +add_executable(adios2_useCases_insituGlobalArraysWriter insituGlobalArraysWriter.cpp) +target_link_libraries(adios2_useCases_insituGlobalArraysWriter adios2::cxx11) +install(TARGETS adios2_useCases_insituGlobalArraysWriter RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + +add_executable(adios2_useCases_insituGlobalArraysReaderNxN insituGlobalArraysReaderNxN.cpp) +target_link_libraries(adios2_useCases_insituGlobalArraysReaderNxN adios2::cxx11) +install(TARGETS adios2_useCases_insituGlobalArraysReaderNxN RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) if(ADIOS2_HAVE_MPI) - add_executable(insituGlobalArraysWriter_mpi insituGlobalArraysWriter.cpp) - target_link_libraries(insituGlobalArraysWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + add_executable(adios2_useCases_insituGlobalArraysWriter_mpi insituGlobalArraysWriter.cpp) + target_link_libraries(adios2_useCases_insituGlobalArraysWriter_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_useCases_insituGlobalArraysWriter_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) - add_executable(insituGlobalArraysReaderNxN_mpi insituGlobalArraysReaderNxN.cpp) - target_link_libraries(insituGlobalArraysReaderNxN_mpi adios2::cxx11_mpi MPI::MPI_C) + add_executable(adios2_useCases_insituGlobalArraysReaderNxN_mpi insituGlobalArraysReaderNxN.cpp) + target_link_libraries(adios2_useCases_insituGlobalArraysReaderNxN_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_useCases_insituGlobalArraysReaderNxN_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) endif() diff --git a/testing/examples/heatTransfer/TestBPFileMx1.cmake b/testing/examples/heatTransfer/TestBPFileMx1.cmake index 354856868f..f2855476bb 100644 --- a/testing/examples/heatTransfer/TestBPFileMx1.cmake +++ b/testing/examples/heatTransfer/TestBPFileMx1.cmake @@ -8,8 +8,8 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.BP3.Mx1.Write COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp3.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp3.xml Write.bp 2 2 10 10 10 10 ) set_tests_properties(HeatTransfer.BP3.Mx1.Write PROPERTIES PROCESSORS 4) @@ -17,8 +17,8 @@ set_tests_properties(HeatTransfer.BP3.Mx1.Write PROPERTIES PROCESSORS 4) add_test(NAME HeatTransfer.BP3.Mx1.Read COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 1 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp3.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp3.xml Write.bp Read.bp 1 1 ) @@ -43,8 +43,8 @@ SetupTestPipeline(HeatTransfer.BP3.Mx1 "Write;Read;Dump;Validate" TRUE) add_test(NAME HeatTransfer.BP4.Mx1.Write COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp4.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp4.xml Write.bp 2 2 10 10 10 10 ) set_tests_properties(HeatTransfer.BP4.Mx1.Write PROPERTIES PROCESSORS 4) @@ -52,8 +52,8 @@ set_tests_properties(HeatTransfer.BP4.Mx1.Write PROPERTIES PROCESSORS 4) add_test(NAME HeatTransfer.BP4.Mx1.Read COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 1 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp4.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp4.xml Write.bp Read.bp 1 1 ) diff --git a/testing/examples/heatTransfer/TestBPFileMx1_zfp.cmake b/testing/examples/heatTransfer/TestBPFileMx1_zfp.cmake index 4f5651a06a..ed75a60b9f 100644 --- a/testing/examples/heatTransfer/TestBPFileMx1_zfp.cmake +++ b/testing/examples/heatTransfer/TestBPFileMx1_zfp.cmake @@ -8,8 +8,8 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.BP3.zfp.Mx1.Write COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp3_zfp.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp3_zfp.xml Write.bp 2 2 10 10 10 10 ) set_tests_properties(HeatTransfer.BP3.zfp.Mx1.Write PROPERTIES PROCESSORS 4) @@ -17,8 +17,8 @@ set_tests_properties(HeatTransfer.BP3.zfp.Mx1.Write PROPERTIES PROCESSORS 4) add_test(NAME HeatTransfer.BP3.zfp.Mx1.Read COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 1 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp3.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp3.xml Write.bp Read.bp 1 1 ) @@ -36,8 +36,8 @@ SetupTestPipeline(HeatTransfer.BP3.zfp.Mx1 "Write;Read;Dump" TRUE) add_test(NAME HeatTransfer.BP4.zfp.Mx1.Write COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp4_zfp.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp4_zfp.xml Write.bp 2 2 10 10 10 10 ) set_tests_properties(HeatTransfer.BP3.zfp.Mx1.Write PROPERTIES PROCESSORS 4) @@ -45,8 +45,8 @@ set_tests_properties(HeatTransfer.BP3.zfp.Mx1.Write PROPERTIES PROCESSORS 4) add_test(NAME HeatTransfer.BP4.zfp.Mx1.Read COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 1 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp4.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp4.xml Write.bp Read.bp 1 1 ) diff --git a/testing/examples/heatTransfer/TestBPFileMxM.cmake b/testing/examples/heatTransfer/TestBPFileMxM.cmake index ac3e02bd85..64d5cbe1e2 100644 --- a/testing/examples/heatTransfer/TestBPFileMxM.cmake +++ b/testing/examples/heatTransfer/TestBPFileMxM.cmake @@ -9,8 +9,8 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.BP3.MxM.Write COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp3.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp3.xml Write.bp 2 2 10 10 10 10 ) set_tests_properties(HeatTransfer.BP3.MxM.Write PROPERTIES PROCESSORS 4) @@ -18,8 +18,8 @@ set_tests_properties(HeatTransfer.BP3.MxM.Write PROPERTIES PROCESSORS 4) add_test(NAME HeatTransfer.BP3.MxM.Read COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp3.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp3.xml Write.bp Read.bp 2 2 ) set_tests_properties(HeatTransfer.BP3.MxM.Read PROPERTIES PROCESSORS 4) @@ -44,8 +44,8 @@ SetupTestPipeline(HeatTransfer.BP3.MxM "Write;Read;Dump;Validate" True) add_test(NAME HeatTransfer.BP4.MxM.Write COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp4.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp4.xml Write.bp 2 2 10 10 10 10 ) set_tests_properties(HeatTransfer.BP4.MxM.Write PROPERTIES PROCESSORS 4) @@ -53,8 +53,8 @@ set_tests_properties(HeatTransfer.BP4.MxM.Write PROPERTIES PROCESSORS 4) add_test(NAME HeatTransfer.BP4.MxM.Read COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp4.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp4.xml Write.bp Read.bp 2 2 ) set_tests_properties(HeatTransfer.BP4.MxM.Read PROPERTIES PROCESSORS 4) diff --git a/testing/examples/heatTransfer/TestBPFileMxN.cmake b/testing/examples/heatTransfer/TestBPFileMxN.cmake index 9c89a4977e..b94bd843a3 100644 --- a/testing/examples/heatTransfer/TestBPFileMxN.cmake +++ b/testing/examples/heatTransfer/TestBPFileMxN.cmake @@ -9,8 +9,8 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.BP3.MxN.Write COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp3.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp3.xml Write.bp 2 2 10 10 10 10 ) set_tests_properties(HeatTransfer.BP3.MxN.Write PROPERTIES PROCESSORS 4) @@ -18,8 +18,8 @@ set_tests_properties(HeatTransfer.BP3.MxN.Write PROPERTIES PROCESSORS 4) add_test(NAME HeatTransfer.BP3.MxN.Read COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 3 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp3.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp3.xml Write.bp Read.bp 1 3 ) set_tests_properties(HeatTransfer.BP3.MxN.Read PROPERTIES PROCESSORS 3) @@ -44,8 +44,8 @@ SetupTestPipeline(HeatTransfer.BP3.MxN "Write;Read;Dump;Validate" True) add_test(NAME HeatTransfer.BP4.MxN.Write COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp4.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp4.xml Write.bp 2 2 10 10 10 10 ) set_tests_properties(HeatTransfer.BP4.MxN.Write PROPERTIES PROCESSORS 4) @@ -53,8 +53,8 @@ set_tests_properties(HeatTransfer.BP4.MxN.Write PROPERTIES PROCESSORS 4) add_test(NAME HeatTransfer.BP4.MxN.Read COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 3 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_bp4.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_bp4.xml Write.bp Read.bp 1 3 ) set_tests_properties(HeatTransfer.BP4.MxN.Read PROPERTIES PROCESSORS 3) diff --git a/testing/examples/heatTransfer/TestInlineMxM.cmake b/testing/examples/heatTransfer/TestInlineMxM.cmake index b14102f196..ecdf64abaf 100644 --- a/testing/examples/heatTransfer/TestInlineMxM.cmake +++ b/testing/examples/heatTransfer/TestInlineMxM.cmake @@ -8,8 +8,8 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.Inline.MxM COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_inline.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_inline.xml Read.bp 2 2 10 10 10 10 ) set_tests_properties(HeatTransfer.Inline.MxM PROPERTIES PROCESSORS 8) diff --git a/testing/examples/heatTransfer/TestSSCMx1.cmake b/testing/examples/heatTransfer/TestSSCMx1.cmake index 7183b35657..eb599d00e4 100644 --- a/testing/examples/heatTransfer/TestSSCMx1.cmake +++ b/testing/examples/heatTransfer/TestSSCMx1.cmake @@ -8,13 +8,13 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.InsituMPI.Mx1 COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_ssc.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_ssc.xml Write.bp 2 2 10 10 10 10 : ${MPIEXEC_NUMPROC_FLAG} 1 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_ssc.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_ssc.xml Write.bp Read.bp 1 1 ) set_tests_properties(HeatTransfer.InsituMPI.Mx1 PROPERTIES PROCESSORS 5) diff --git a/testing/examples/heatTransfer/TestSSCMxM.cmake b/testing/examples/heatTransfer/TestSSCMxM.cmake index 9af79873de..94c326786a 100644 --- a/testing/examples/heatTransfer/TestSSCMxM.cmake +++ b/testing/examples/heatTransfer/TestSSCMxM.cmake @@ -8,13 +8,13 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.SSC.MxM COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_ssc.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_ssc.xml Write.bp 2 2 10 10 10 10 : ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_ssc.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_ssc.xml Write.bp Read.bp 2 2 ) set_tests_properties(HeatTransfer.SSC.MxM PROPERTIES PROCESSORS 8) diff --git a/testing/examples/heatTransfer/TestSSCMxN.cmake b/testing/examples/heatTransfer/TestSSCMxN.cmake index 46818db55d..ebbbc7e8bf 100644 --- a/testing/examples/heatTransfer/TestSSCMxN.cmake +++ b/testing/examples/heatTransfer/TestSSCMxN.cmake @@ -8,13 +8,13 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.InsituMPI.MxN COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_ssc.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_ssc.xml Write.bp 2 2 10 10 10 10 : ${MPIEXEC_NUMPROC_FLAG} 3 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_ssc.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_ssc.xml Write.bp Read.bp 1 3 ) set_tests_properties(HeatTransfer.InsituMPI.MxN PROPERTIES PROCESSORS 7) diff --git a/testing/examples/heatTransfer/TestSSTBPMx1.cmake b/testing/examples/heatTransfer/TestSSTBPMx1.cmake index 7da75f9cb4..6566541d62 100644 --- a/testing/examples/heatTransfer/TestSSTBPMx1.cmake +++ b/testing/examples/heatTransfer/TestSSTBPMx1.cmake @@ -8,13 +8,13 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.SST.BP.Mx1 COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_bp.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_bp.xml Write.bp 2 2 10 10 10 10 SST : ${MPIEXEC_NUMPROC_FLAG} 1 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_bp.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_bp.xml Write.bp Read.bp 1 1 SST ) set_tests_properties(HeatTransfer.SST.BP.Mx1 PROPERTIES PROCESSORS 5) diff --git a/testing/examples/heatTransfer/TestSSTBPMxM.cmake b/testing/examples/heatTransfer/TestSSTBPMxM.cmake index 286b707eb7..d4fe9f52ae 100644 --- a/testing/examples/heatTransfer/TestSSTBPMxM.cmake +++ b/testing/examples/heatTransfer/TestSSTBPMxM.cmake @@ -8,13 +8,13 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.SST.BP.MxM COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_bp.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_bp.xml Write.bp 2 2 10 10 10 10 SST : ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_bp.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_bp.xml Write.bp Read.bp 2 2 SST ) set_tests_properties(HeatTransfer.SST.BP.MxM PROPERTIES PROCESSORS 8) diff --git a/testing/examples/heatTransfer/TestSSTBPMxN.cmake b/testing/examples/heatTransfer/TestSSTBPMxN.cmake index 1860244786..c7c26b2f51 100644 --- a/testing/examples/heatTransfer/TestSSTBPMxN.cmake +++ b/testing/examples/heatTransfer/TestSSTBPMxN.cmake @@ -8,13 +8,13 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.SST.BP.MxN COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_bp.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_bp.xml Write.bp 2 2 10 10 10 10 SST : ${MPIEXEC_NUMPROC_FLAG} 3 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_bp.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_bp.xml Write.bp Read.bp 1 3 SST ) set_tests_properties(HeatTransfer.SST.BP.MxN PROPERTIES PROCESSORS 7) diff --git a/testing/examples/heatTransfer/TestSSTBPRDMAMxN.cmake b/testing/examples/heatTransfer/TestSSTBPRDMAMxN.cmake index 70dbb99a7e..487194089d 100644 --- a/testing/examples/heatTransfer/TestSSTBPRDMAMxN.cmake +++ b/testing/examples/heatTransfer/TestSSTBPRDMAMxN.cmake @@ -8,13 +8,13 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.SST.BP.RDMA.MxN COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_bp_rdma.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_bp_rdma.xml Write.bp 2 2 10 10 10 10 SST : ${MPIEXEC_NUMPROC_FLAG} 3 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_bp_rdma.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_bp_rdma.xml Write.bp Read.bp 1 3 SST ) set_tests_properties(HeatTransfer.SST.BP.RDMA.MxN PROPERTIES PROCESSORS 7) diff --git a/testing/examples/heatTransfer/TestSSTFFSMx1.cmake b/testing/examples/heatTransfer/TestSSTFFSMx1.cmake index 1c261b0f0f..b0dfb92210 100644 --- a/testing/examples/heatTransfer/TestSSTFFSMx1.cmake +++ b/testing/examples/heatTransfer/TestSSTFFSMx1.cmake @@ -8,13 +8,13 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.SST.FFS.Mx1 COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_ffs.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_ffs.xml Write.bp 2 2 10 10 10 10 SST : ${MPIEXEC_NUMPROC_FLAG} 1 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_ffs.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_ffs.xml Write.bp Read.bp 1 1 SST ) set_tests_properties(HeatTransfer.SST.FFS.Mx1 PROPERTIES PROCESSORS 5) diff --git a/testing/examples/heatTransfer/TestSSTFFSMxM.cmake b/testing/examples/heatTransfer/TestSSTFFSMxM.cmake index 500869e30c..fd9ff096c9 100644 --- a/testing/examples/heatTransfer/TestSSTFFSMxM.cmake +++ b/testing/examples/heatTransfer/TestSSTFFSMxM.cmake @@ -8,13 +8,13 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.SST.FFS.MxM COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_ffs.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_ffs.xml Write.bp 2 2 10 10 10 10 SST : ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_ffs.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_ffs.xml Write.bp Read.bp 2 2 SST ) set_tests_properties(HeatTransfer.SST.FFS.MxM PROPERTIES PROCESSORS 8) diff --git a/testing/examples/heatTransfer/TestSSTFFSMxN.cmake b/testing/examples/heatTransfer/TestSSTFFSMxN.cmake index 774a1ce7ff..0e973c1f5c 100644 --- a/testing/examples/heatTransfer/TestSSTFFSMxN.cmake +++ b/testing/examples/heatTransfer/TestSSTFFSMxN.cmake @@ -8,13 +8,13 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.SST.FFS.MxN COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_ffs.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_ffs.xml Write.bp 2 2 10 10 10 10 SST : ${MPIEXEC_NUMPROC_FLAG} 3 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_ffs.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_ffs.xml Write.bp Read.bp 1 3 SST ) set_tests_properties(HeatTransfer.SST.FFS.MxN PROPERTIES PROCESSORS 7) diff --git a/testing/examples/heatTransfer/TestSSTFFSRDMAMxN.cmake b/testing/examples/heatTransfer/TestSSTFFSRDMAMxN.cmake index 70c933e375..08f1cad1a7 100644 --- a/testing/examples/heatTransfer/TestSSTFFSRDMAMxN.cmake +++ b/testing/examples/heatTransfer/TestSSTFFSRDMAMxN.cmake @@ -8,13 +8,13 @@ include(ADIOSFunctions) add_test(NAME HeatTransfer.SST.FFS.MxN COMMAND ${MPIEXEC_EXECUTABLE} ${MPIEXEC_EXTRA_FLAGS} ${MPIEXEC_NUMPROC_FLAG} 4 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_ffs_rdma.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_ffs_rdma.xml Write.bp 2 2 10 10 10 10 SST : ${MPIEXEC_NUMPROC_FLAG} 3 - $ - ${PROJECT_SOURCE_DIR}/examples/heatTransfer/heat_sst_ffs_rdma.xml + $ + ${PROJECT_SOURCE_DIR}/examples/simulations/heatTransfer/heat_sst_ffs_rdma.xml Write.bp Read.bp 1 3 SST ) set_tests_properties(HeatTransfer.SST.FFS.MxN PROPERTIES PROCESSORS 7) diff --git a/testing/install/EncryptionOperator/CMakeLists.txt b/testing/install/EncryptionOperator/CMakeLists.txt index ed4fae524b..aca5c62e68 100644 --- a/testing/install/EncryptionOperator/CMakeLists.txt +++ b/testing/install/EncryptionOperator/CMakeLists.txt @@ -17,14 +17,14 @@ set(ENV{ADIOS2_PLUGIN_PATH} "${adios2_DIR}/../../") # add write test add_executable(adios_plugin_operator_write_test - ../../../examples/plugins/operator/examplePluginOperator_write.cpp + ../../../examples/plugins/operator/examplePluginOperatorWrite.cpp ) target_link_libraries(adios_plugin_operator_write_test adios2::cxx11) add_test(NAME adios_plugin_operator_write_test COMMAND adios_plugin_operator_write_test) # add read test add_executable(adios_plugin_operator_read_test - ../../../examples/plugins/operator/examplePluginOperator_read.cpp + ../../../examples/plugins/operator/examplePluginOperatorRead.cpp ) target_link_libraries(adios_plugin_operator_read_test adios2::cxx11) add_test(NAME adios_plugin_operator_read_test COMMAND adios_plugin_operator_read_test) diff --git a/testing/install/EnginePlugin/CMakeLists.txt b/testing/install/EnginePlugin/CMakeLists.txt index 7a7425f8d6..2949290c2b 100644 --- a/testing/install/EnginePlugin/CMakeLists.txt +++ b/testing/install/EnginePlugin/CMakeLists.txt @@ -43,7 +43,7 @@ endif() # add write test add_executable(adios_plugin_engine_write_test - ../../../examples/plugins/engine/examplePluginEngine_write.cpp + ../../../examples/plugins/engine/examplePluginEngineWrite.cpp ) target_link_libraries(adios_plugin_engine_write_test adios2::cxx11) add_test(NAME adios_plugin_engine_write_test COMMAND adios_plugin_engine_write_test) @@ -53,7 +53,7 @@ set_tests_properties(adios_plugin_engine_write_test PROPERTIES # add read test add_executable(adios_plugin_engine_read_test - ../../../examples/plugins/engine/examplePluginEngine_read.cpp + ../../../examples/plugins/engine/examplePluginEngineRead.cpp ) target_link_libraries(adios_plugin_engine_read_test adios2::cxx11) add_test(NAME adios_plugin_engine_read_test COMMAND adios_plugin_engine_read_test) From 3bdc1aa2b33c53c2f4764e8162e1f8088d788cdb Mon Sep 17 00:00:00 2001 From: Spiros Tsalikis Date: Mon, 18 Sep 2023 14:16:55 -0400 Subject: [PATCH 156/183] Add examples from ADIOS2-Examples 1) Make all examples individually compilable 2) Make examples' executable names be consistent 3) Rename certain examples for clarity 4) Make all examples installable 5) Fix Python formatting using black 6) Add licence documentation wherever it's missing --- examples/basics/CMakeLists.txt | 8 +- examples/basics/globalArray1D/CMakeLists.txt | 80 + examples/basics/globalArray1D/decomp.F90 | 53 + examples/basics/globalArray1D/decomp.c | 67 + examples/basics/globalArray1D/decomp.h | 14 + .../globalArray1D/globalArray1DRead.F90 | 104 + .../basics/globalArray1D/globalArray1DRead.c | 86 + .../globalArray1D/globalArray1DWrite.F90 | 93 + .../basics/globalArray1D/globalArray1DWrite.c | 99 + examples/basics/globalArray1D/mpivars.F90 | 30 + examples/basics/globalArray1D/mpivars.c | 29 + examples/basics/globalArray1D/mpivars.h | 14 + .../globalArrayND/globalArrayNDWrite.cpp | 3 +- examples/basics/queryWorker/CMakeLists.txt | 4 +- examples/basics/queryWorker/README.md | 8 - examples/basics/queryWorker/queryWorker.cpp | 11 +- examples/basics/values/CMakeLists.txt | 21 + examples/basics/values/mpivars.F90 | 30 + examples/basics/values/values.F90 | 169 + .../basics/variablesShapes/CMakeLists.txt | 39 + .../variablesShapes/variablesShapes.cpp | 269 + .../variablesShapes/variablesShapes_hl.cpp | 194 + examples/hello/CMakeLists.txt | 16 + examples/hello/bpThreadWrite/CMakeLists.txt | 21 + .../hello/bpThreadWrite/bpThreadWrite.cpp | 122 + examples/hello/bpWriteReadHip/CMakeLists.txt | 25 + .../hello/bpWriteReadHip/bpWriteReadHip.cpp | 135 + .../hello/bpWriteReadKokkos/CMakeLists.txt | 33 + .../bpWriteReadKokkos/bpWriteReadKokkos.cpp | 117 + examples/hello/helloWorld/CMakeLists.txt | 47 + examples/hello/helloWorld/hello-world-hl.cpp | 75 + examples/hello/helloWorld/hello-world-hl.py | 47 + examples/hello/helloWorld/hello-world.c | 71 + examples/hello/helloWorld/hello-world.cpp | 76 + examples/hello/helloWorld/hello-world.py | 54 + examples/simulations/CMakeLists.txt | 10 + .../GrayScott.jl/.JuliaFormatter.toml | 4 + .../simulations/GrayScott.jl/Project.toml | 19 + examples/simulations/GrayScott.jl/ReadMe.md | 139 + .../GrayScott.jl/examples/settings-files.json | 23 + .../simulations/GrayScott.jl/gray-scott.jl | 15 + .../GrayScott.jl/scripts/config_crusher.sh | 43 + .../GrayScott.jl/scripts/config_summit.sh | 43 + .../GrayScott.jl/scripts/job_crusher.sh | 17 + .../GrayScott.jl/scripts/job_summit.sh | 18 + .../simulations/GrayScott.jl/src/GrayScott.jl | 91 + .../GrayScott.jl/src/analysis/pdfcalc.jl | 160 + .../GrayScott.jl/src/helper/Helper.jl | 7 + .../GrayScott.jl/src/helper/helperMPI.jl | 15 + .../GrayScott.jl/src/helper/helperString.jl | 14 + .../GrayScott.jl/src/simulation/IO.jl | 106 + .../GrayScott.jl/src/simulation/Inputs.jl | 78 + .../GrayScott.jl/src/simulation/Simulation.jl | 281 + .../src/simulation/Simulation_AMDGPU.jl | 168 + .../src/simulation/Simulation_CUDA.jl | 160 + .../GrayScott.jl/src/simulation/Structs.jl | 102 + .../GrayScott.jl/test/Project.toml | 3 + .../test/functional/functional-GrayScott.jl | 12 + .../simulations/GrayScott.jl/test/runtests.jl | 26 + .../test/unit/analysis/unit-pdfcalc.jl | 19 + .../test/unit/helper/unit-helperMPI.jl | 12 + .../test/unit/simulation/unit-IO.jl | 36 + .../test/unit/simulation/unit-Inputs.jl | 15 + .../test/unit/simulation/unit-Simulation.jl | 34 + .../unit/simulation/unit-Simulation_CUDA.jl | 28 + .../gray-scott-kokkos/CMakeLists.txt | 47 + .../simulations/gray-scott-kokkos/README.md | 2 + .../gray-scott-kokkos/gray-scott.cpp | 330 + .../gray-scott-kokkos/gray-scott.h | 102 + .../simulations/gray-scott-kokkos/json.hpp | 20274 ++++++++++++++++ .../simulations/gray-scott-kokkos/main.cpp | 183 + .../simulations/gray-scott-kokkos/restart.cpp | 96 + .../simulations/gray-scott-kokkos/restart.h | 18 + .../gray-scott-kokkos/settings.cpp | 89 + .../simulations/gray-scott-kokkos/settings.h | 37 + .../simulations/gray-scott-kokkos/timer.hpp | 55 + .../simulations/gray-scott-kokkos/writer.cpp | 140 + .../simulations/gray-scott-kokkos/writer.h | 32 + .../gray-scott-struct/CMakeLists.txt | 70 + .../simulations/gray-scott-struct/README.md | 197 + .../adios2-inline-plugin.xml | 135 + .../simulations/gray-scott-struct/adios2.xml | 142 + .../gray-scott-struct/analysis/curvature.cpp | 202 + .../gray-scott-struct/analysis/find_blobs.cpp | 245 + .../gray-scott-struct/analysis/isosurface.cpp | 346 + .../gray-scott-struct/analysis/pdf-calc.cpp | 354 + .../gray-scott-struct/catalyst/gs-fides.json | 60 + .../gray-scott-struct/catalyst/gs-pipeline.py | 65 + .../gray-scott-struct/catalyst/setup.sh | 6 + .../simulations/gray-scott-struct/cleanup.sh | 28 + .../gray-scott-struct/common/timer.hpp | 59 + .../gray-scott-struct/img/example1.jpg | Bin 0 -> 23365 bytes .../gray-scott-struct/img/example2.jpg | Bin 0 -> 24700 bytes .../gray-scott-struct/img/example3.jpg | Bin 0 -> 22000 bytes .../gray-scott-struct/img/example4.jpg | Bin 0 -> 19246 bytes .../gray-scott-struct/img/example5.jpg | Bin 0 -> 17746 bytes .../gray-scott-struct/plot/decomp.py | 121 + .../gray-scott-struct/plot/gsplot.py | 187 + .../gray-scott-struct/plot/pdfplot.py | 135 + .../plot/render_isosurface.cpp | 204 + .../gray-scott-struct/simulation/LICENSE | 20 + .../simulation/gray-scott.cpp | 290 + .../gray-scott-struct/simulation/gray-scott.h | 131 + .../gray-scott-struct/simulation/json.hpp | 20274 ++++++++++++++++ .../gray-scott-struct/simulation/main.cpp | 176 + .../gray-scott-struct/simulation/restart.cpp | 92 + .../gray-scott-struct/simulation/restart.h | 19 + .../simulation/settings-files.json | 21 + .../simulation/settings-inline.json | 21 + .../simulation/settings-staging.json | 21 + .../gray-scott-struct/simulation/settings.cpp | 89 + .../gray-scott-struct/simulation/settings.h | 37 + .../gray-scott-struct/simulation/writer.cpp | 146 + .../gray-scott-struct/simulation/writer.h | 33 + .../gray-scott-struct/test-firstrun.json | 21 + .../gray-scott-struct/test-restart.json | 21 + .../gray-scott-struct/visit-bp4.session | 5456 +++++ .../gray-scott-struct/visit-bp4.session.gui | 54 + .../gray-scott-struct/visit-sst.session | 5600 +++++ .../gray-scott-struct/visit-sst.session.gui | 54 + .../simulations/gray-scott/CMakeLists.txt | 69 + examples/simulations/gray-scott/README.md | 211 + .../gray-scott/adios2-fides-staging.xml | 142 + .../gray-scott/adios2-inline-plugin.xml | 135 + examples/simulations/gray-scott/adios2.xml | 142 + .../gray-scott/analysis/curvature.cpp | 202 + .../gray-scott/analysis/find_blobs.cpp | 245 + .../gray-scott/analysis/isosurface.cpp | 346 + .../gray-scott/analysis/pdf-calc.cpp | 354 + .../gray-scott/catalyst/gs-fides.json | 60 + .../gray-scott/catalyst/gs-pipeline.py | 193 + .../simulations/gray-scott/catalyst/setup.sh | 6 + examples/simulations/gray-scott/cleanup.sh | 28 + .../simulations/gray-scott/common/timer.hpp | 55 + .../simulations/gray-scott/img/example1.jpg | Bin 0 -> 23365 bytes .../simulations/gray-scott/img/example2.jpg | Bin 0 -> 24700 bytes .../simulations/gray-scott/img/example3.jpg | Bin 0 -> 22000 bytes .../simulations/gray-scott/img/example4.jpg | Bin 0 -> 19246 bytes .../simulations/gray-scott/img/example5.jpg | Bin 0 -> 17746 bytes .../simulations/gray-scott/plot/decomp.py | 121 + .../simulations/gray-scott/plot/gsplot.py | 187 + .../simulations/gray-scott/plot/pdfplot.py | 135 + .../gray-scott/plot/render_isosurface.cpp | 204 + .../simulations/gray-scott/simulation/LICENSE | 20 + .../gray-scott/simulation/gray-scott.cpp | 277 + .../gray-scott/simulation/gray-scott.h | 130 + .../gray-scott/simulation/json.hpp | 20274 ++++++++++++++++ .../gray-scott/simulation/main.cpp | 177 + .../gray-scott/simulation/restart.cpp | 96 + .../gray-scott/simulation/restart.h | 19 + .../gray-scott/simulation/settings-files.json | 21 + .../simulation/settings-inline.json | 21 + .../simulation/settings-staging.json | 21 + .../gray-scott/simulation/settings.cpp | 89 + .../gray-scott/simulation/settings.h | 37 + .../gray-scott/simulation/writer.cpp | 152 + .../gray-scott/simulation/writer.h | 33 + .../simulations/gray-scott/visit-bp4.session | 5456 +++++ .../gray-scott/visit-bp4.session.gui | 54 + .../simulations/gray-scott/visit-sst.session | 5600 +++++ .../gray-scott/visit-sst.session.gui | 54 + .../korteweg-de-vries/CMakeLists.txt | 17 + .../simulations/korteweg-de-vries/KdV.cpp | 198 + .../simulations/korteweg-de-vries/README.md | 15 + .../korteweg-de-vries/graph_solution.py | 34 + .../simulations/lorenz_ode/CMakeLists.txt | 23 + examples/simulations/lorenz_ode/README.md | 38 + examples/simulations/lorenz_ode/lorenz.hpp | 221 + .../simulations/lorenz_ode/lorenzReader.cpp | 123 + .../simulations/lorenz_ode/lorenzWriter.cpp | 88 + .../simulations/lorenz_ode/lorenz_ode.svg | 2 + .../lorenz_ode/ode_phase_space.svg | 2 + .../simulations/lorenz_ode/ode_tuples.svg | 2 + .../lorenz_ode/second_derivative.svg | 2 + .../simulations/lorenz_ode/taylor_series.svg | 2 + 175 files changed, 96611 insertions(+), 21 deletions(-) create mode 100644 examples/basics/globalArray1D/CMakeLists.txt create mode 100644 examples/basics/globalArray1D/decomp.F90 create mode 100644 examples/basics/globalArray1D/decomp.c create mode 100644 examples/basics/globalArray1D/decomp.h create mode 100644 examples/basics/globalArray1D/globalArray1DRead.F90 create mode 100644 examples/basics/globalArray1D/globalArray1DRead.c create mode 100644 examples/basics/globalArray1D/globalArray1DWrite.F90 create mode 100644 examples/basics/globalArray1D/globalArray1DWrite.c create mode 100644 examples/basics/globalArray1D/mpivars.F90 create mode 100644 examples/basics/globalArray1D/mpivars.c create mode 100644 examples/basics/globalArray1D/mpivars.h delete mode 100644 examples/basics/queryWorker/README.md create mode 100644 examples/basics/values/mpivars.F90 create mode 100644 examples/basics/values/values.F90 create mode 100644 examples/basics/variablesShapes/CMakeLists.txt create mode 100644 examples/basics/variablesShapes/variablesShapes.cpp create mode 100644 examples/basics/variablesShapes/variablesShapes_hl.cpp create mode 100644 examples/hello/bpThreadWrite/CMakeLists.txt create mode 100644 examples/hello/bpThreadWrite/bpThreadWrite.cpp create mode 100644 examples/hello/bpWriteReadHip/CMakeLists.txt create mode 100644 examples/hello/bpWriteReadHip/bpWriteReadHip.cpp create mode 100644 examples/hello/bpWriteReadKokkos/CMakeLists.txt create mode 100644 examples/hello/bpWriteReadKokkos/bpWriteReadKokkos.cpp create mode 100644 examples/hello/helloWorld/CMakeLists.txt create mode 100644 examples/hello/helloWorld/hello-world-hl.cpp create mode 100644 examples/hello/helloWorld/hello-world-hl.py create mode 100644 examples/hello/helloWorld/hello-world.c create mode 100644 examples/hello/helloWorld/hello-world.cpp create mode 100644 examples/hello/helloWorld/hello-world.py create mode 100644 examples/simulations/GrayScott.jl/.JuliaFormatter.toml create mode 100644 examples/simulations/GrayScott.jl/Project.toml create mode 100644 examples/simulations/GrayScott.jl/ReadMe.md create mode 100644 examples/simulations/GrayScott.jl/examples/settings-files.json create mode 100644 examples/simulations/GrayScott.jl/gray-scott.jl create mode 100644 examples/simulations/GrayScott.jl/scripts/config_crusher.sh create mode 100644 examples/simulations/GrayScott.jl/scripts/config_summit.sh create mode 100644 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examples/simulations/lorenz_ode/taylor_series.svg diff --git a/examples/basics/CMakeLists.txt b/examples/basics/CMakeLists.txt index 7e470c02d1..972125c4df 100644 --- a/examples/basics/CMakeLists.txt +++ b/examples/basics/CMakeLists.txt @@ -3,10 +3,12 @@ # accompanying file Copyright.txt for details. #------------------------------------------------------------------------------# +if(ADIOS2_HAVE_MPI) + add_subdirectory(globalArray1D) +endif() add_subdirectory(globalArrayND) add_subdirectory(joinedArray) add_subdirectory(localArray) -if(ADIOS2_HAVE_DATAMAN) - add_subdirectory(queryWorker) -endif() +add_subdirectory(queryWorker) add_subdirectory(values) +add_subdirectory(variablesShapes) diff --git a/examples/basics/globalArray1D/CMakeLists.txt b/examples/basics/globalArray1D/CMakeLists.txt new file mode 100644 index 0000000000..1173b5fab5 --- /dev/null +++ b/examples/basics/globalArray1D/CMakeLists.txt @@ -0,0 +1,80 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2BasicsGlobalArray1DExample) + +if(NOT TARGET adios2_core) + set(_components C) + + include(CheckLanguage) + check_language(Fortran) + if(CMAKE_Fortran_COMPILER) + enable_language(Fortran) + endif() + if(CMAKE_Fortran_COMPILER_LOADED) + list(APPEND _components Fortran) + endif() + + find_package(MPI COMPONENTS ${_components}) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_MPI) + add_library(adios2_basics_globalArray1D_mpivars_c OBJECT mpivars.c) + target_link_libraries(adios2_basics_globalArray1D_mpivars_c MPI::MPI_C) + install(TARGETS adios2_basics_globalArray1D_mpivars_c RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_library(adios2_basics_globalArray1D_decomp_c OBJECT decomp.c) + target_link_libraries(adios2_basics_globalArray1D_decomp_c + adios2_basics_globalArray1D_mpivars_c MPI::MPI_C) + install(TARGETS adios2_basics_globalArray1D_decomp_c RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_executable(adios2_basics_globalArray1DWrite_c globalArray1DWrite.c) + target_link_libraries(adios2_basics_globalArray1DWrite_c + adios2_basics_globalArray1D_mpivars_c + adios2_basics_globalArray1D_decomp_c + adios2::c_mpi MPI::MPI_C) + install(TARGETS adios2_basics_globalArray1DWrite_c RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_executable(adios2_basics_globalArray1DRead_c globalArray1DRead.c) + target_link_libraries(adios2_basics_globalArray1DRead_c + adios2_basics_globalArray1D_mpivars_c + adios2_basics_globalArray1D_decomp_c + adios2::c_mpi MPI::MPI_C) + install(TARGETS adios2_basics_globalArray1DRead_c RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + if(ADIOS2_HAVE_Fortran) + add_library(adios2_basics_globalArray1D_mpivars_f OBJECT mpivars.F90) + target_link_libraries(adios2_basics_globalArray1D_mpivars_f MPI::MPI_Fortran) + install(TARGETS adios2_basics_globalArray1D_mpivars_f RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_library(adios2_basics_globalArray1D_decomp_f OBJECT decomp.F90) + target_link_libraries(adios2_basics_globalArray1D_decomp_f + adios2_basics_globalArray1D_mpivars_f MPI::MPI_Fortran) + install(TARGETS adios2_basics_globalArray1D_decomp_f RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_executable(adios2_basics_globalArray1DWrite_f globalArray1DWrite.F90) + target_link_libraries(adios2_basics_globalArray1DWrite_f + adios2_basics_globalArray1D_mpivars_f + adios2_basics_globalArray1D_decomp_f + adios2::fortran_mpi MPI::MPI_Fortran) + install(TARGETS adios2_basics_globalArray1DWrite_f RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_executable(adios2_basics_globalArray1DRead_f globalArray1DRead.F90) + target_link_libraries(adios2_basics_globalArray1DRead_f + adios2_basics_globalArray1D_mpivars_f + adios2_basics_globalArray1D_decomp_f + adios2::fortran_mpi MPI::MPI_Fortran) + install(TARGETS adios2_basics_globalArray1DRead_f RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + endif() +endif() diff --git a/examples/basics/globalArray1D/decomp.F90 b/examples/basics/globalArray1D/decomp.F90 new file mode 100644 index 0000000000..b39d93d92c --- /dev/null +++ b/examples/basics/globalArray1D/decomp.F90 @@ -0,0 +1,53 @@ +! Helper functions for all examples +module decomp +contains + +! random integer from {minv, minv+1, ..., maxv} +! including minv and maxv +function get_random(minv, maxv) result(n) + implicit none + integer, intent(in) :: minv, maxv + real :: r + integer :: n + call random_number(r) + n = minv + FLOOR((maxv+1-minv)*r) +end function get_random + +! gather the local sizes of arrays and sum them up +! so that each process knows the global shape +! and its own offset in the global space +subroutine gather_decomp_1d(mysize, myshape, myoffset) + use mpivars + implicit none + integer*8, intent(in) :: mysize + integer*8, intent(out) :: myshape, myoffset + integer*8, dimension(:), allocatable :: sizes + + allocate(sizes(nproc)) + call MPI_Allgather( mysize, 1, MPI_LONG_LONG, & + sizes, 1, MPI_LONG_LONG, & + app_comm, ierr) + myshape = sum(sizes) + myoffset = sum(sizes(1:rank)) + deallocate(sizes) +end subroutine gather_decomp_1d + +subroutine decompose_1d(globalsize, myoffset, mysize) + use mpivars + implicit none + integer*8, intent(in) :: globalsize + integer*8, intent(out) :: myoffset, mysize + integer*8 :: rem + + mysize = globalsize/nproc + rem = globalsize-(nproc*mysize) + if (rank < rem) then + mysize = mysize + 1 + myoffset = rank*mysize + else + myoffset = rank*mysize + rem + endif +end subroutine decompose_1d + +end module decomp + diff --git a/examples/basics/globalArray1D/decomp.c b/examples/basics/globalArray1D/decomp.c new file mode 100644 index 0000000000..bb7d3300a5 --- /dev/null +++ b/examples/basics/globalArray1D/decomp.c @@ -0,0 +1,67 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * Created by Dmitry Ganyushin ganyushindi@ornl.gov + * + * Helper functions for all examples + */ +#include "decomp.h" +#include "mpivars.h" +#include +#include +#include +#include + +/* random integer from {minv, minv+1, ..., maxv} + including minv and maxv */ +long long int get_random(int minv, int maxv) +{ + long long int n; + time_t t; + /* Intializes random number generator */ + srand((unsigned)time(&t)); + n = (rand() % (maxv - minv + 1)) + minv; + return n; +} +/* gather the local sizes of arrays and sum them up + so that each process knows the global shape + and its own offset in the global space */ +void gather_decomp_1d(long long int *mysize, long long int *myshape, long long int *myoffset) +{ + long long int *sizes; + int i; + sizes = malloc(sizeof(long long int) * (size_t)nproc); + MPI_Allgather(mysize, 1, MPI_LONG_LONG, sizes, 1, MPI_LONG_LONG, app_comm); + + *myshape = 0; + for (i = 0; i < nproc; i++) + { + *myshape += sizes[i]; + } + *myoffset = 0; + for (i = 0; i < rank; i++) + { + *myoffset += sizes[i]; + } + + free(sizes); + return; +} + +void decomp_1d(long long int globalsize, long long int *myoffset, long long int *mysize) +{ + long long int rem; + *mysize = globalsize / nproc; + rem = globalsize - (nproc * *mysize); + if (rank < rem) + { + mysize = mysize + 1; + *myoffset = rank * *mysize; + } + else + { + *myoffset = rank * *mysize + rem; + } + return; +} diff --git a/examples/basics/globalArray1D/decomp.h b/examples/basics/globalArray1D/decomp.h new file mode 100644 index 0000000000..e972714844 --- /dev/null +++ b/examples/basics/globalArray1D/decomp.h @@ -0,0 +1,14 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * Created by Dmitry Ganyushin ganyushindi@ornl.gov + */ + +#ifndef ADIOS2EXAMPLES_DECOMP_H +#define ADIOS2EXAMPLES_DECOMP_H + +extern long long int get_random(int, int); +extern void gather_decomp_1d(long long int *, long long int *, long long int *); +extern void decomp_1d(long long int, long long int *, long long int *); +#endif // ADIOS2EXAMPLES_DECOMP_H diff --git a/examples/basics/globalArray1D/globalArray1DRead.F90 b/examples/basics/globalArray1D/globalArray1DRead.F90 new file mode 100644 index 0000000000..725f1992cd --- /dev/null +++ b/examples/basics/globalArray1D/globalArray1DRead.F90 @@ -0,0 +1,104 @@ +program adios2_global_array_1d_read + use mpivars + use adios2 + implicit none + + ! ADIOS2 variables + type(adios2_adios) :: adios + + ! MPI then ADIOS2 initialization + call init_mpi(234) + call adios2_init(adios, app_comm, ierr) + + call reader() + + ! ADIOS2 then MPI finalization + call adios2_finalize(adios, ierr) + call finalize_mpi() + +contains + +subroutine reader + use mpivars + use decomp + use adios2 + implicit none + + character(len=256), parameter :: streamname = "adios2-global-array-1d-f.bp" + + type(adios2_io) :: io + type(adios2_engine) :: engine + type(adios2_variable) :: var_g + integer :: step, istatus + + ! Application variables + ! g = 1D distributed array, global shape and per-process size is fixed + + real*4, dimension(:), allocatable :: g + integer :: ndims + integer*8, dimension(:), allocatable :: fixed_shape + integer*8, dimension(1) :: fixed_start, fixed_count + + call adios2_declare_io (io, adios, 'input', ierr) + call adios2_open(engine, io, streamname, adios2_mode_read, ierr) + if (ierr .ne. 0) then + print '(" Failed to open stream: ",a)', streamname + print '(" open stream ierr=: ",i0)', ierr + return + endif + + ! Reading steps + step = 0 + do + call adios2_begin_step(engine, adios2_step_mode_read, 0.0, istatus, ierr) + if (ierr /= 0) then + print '(" Failure when trying to get next step: ",a)', streamname + exit + endif + if (istatus == adios2_step_status_end_of_stream) then + ! Stream has terminated, no more steps are available + !print '(" Input stream has terminated: ",a)', streamname + exit + endif + + ! Variable pointer MUST be retrieved every step, the reference + ! will go invalid after adios2_end_step + call adios2_inquire_variable(var_g, io, "GlobalArray", ierr ) + + ! Get variable dimensions and do decomposition in the first step + ! These don't change for the stream in this example + if (step == 0) then + ! fixed_shape is allocated in the next call + call adios2_variable_shape(fixed_shape, ndims, var_g, ierr) + + call decompose_1d(fixed_shape(1), fixed_start(1), fixed_count(1)) + allocate(g(fixed_count(1))) + + write (*,100) "Read plan rank=", rank, & + " global shape = ", fixed_shape(1), & + " local count = ", fixed_count(1), & + " offset = ", fixed_start(1) +100 format (a,i2,a,i4,a,i1,a,i4) + endif + + call adios2_set_selection(var_g, 1, fixed_start, fixed_count, ierr) + call adios2_get(engine, var_g, g, ierr) + call adios2_end_step(engine, ierr) + + ! g[] is now filled with data AFTER adios2_end_step/adios2_perform_gets + ! or should call adios2_get(engine, var_g, g, adios2_mode_sync, ierr) + ! to get it immediately in the get() call + + step = step + 1 + enddo + + ! Close the output + call adios2_close(engine, ierr) + + deallocate(g) + deallocate(fixed_shape) + +end subroutine reader + + +end program adios2_global_array_1d_read diff --git a/examples/basics/globalArray1D/globalArray1DRead.c b/examples/basics/globalArray1D/globalArray1DRead.c new file mode 100644 index 0000000000..288ce9f11b --- /dev/null +++ b/examples/basics/globalArray1D/globalArray1DRead.c @@ -0,0 +1,86 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * Created by Dmitry Ganyushin ganyushindi@ornl.gov + */ +#include "decomp.h" +#include "mpivars.h" +#include +#include +#include + +void reader(adios2_adios *adios) +{ + int step; + float *g; + const char *streamname = "adios2-global-array-1d-c.bp"; + adios2_step_status err; + + long long int fixed_shape = 0, fixed_start = 0, fixed_count = 0; + + adios2_io *io = adios2_declare_io(adios, "input"); + size_t shape[1]; + shape[0] = (size_t)fixed_shape; + + adios2_engine *engine = adios2_open(io, streamname, adios2_mode_read); + step = 0; + do + { + adios2_begin_step(engine, adios2_step_mode_read, 10.0, &err); + adios2_variable *var_g = adios2_inquire_variable(io, "GlobalArray"); + if (step == 0) + { + /* fixed_shape is allocated in the next call*/ + adios2_variable_shape(shape, var_g); + fixed_shape = (long long int)shape[0]; + decomp_1d(fixed_shape, &fixed_start, &fixed_count); + g = malloc((size_t)fixed_count * sizeof(float)); + + printf("Read plan rank = %d global shape = %lld local count = %lld " + "offset = %lld\n", + rank, fixed_shape, fixed_count, fixed_start); + } + adios2_end_step(engine); + step++; + } while (err != adios2_step_status_end_of_stream); + // Close the output + adios2_close(engine); + free(g); + + if (rank == 0) + { + printf("Try the following: \n"); + printf(" bpls -la adios2-global-array-1d-c.bp GlobalArray -d -n " + "%lld \n", + fixed_shape); + printf(" bpls -la adios2-global-array-1d-c.bp GlobalArray -d -t -n " + "%lld \n ", + fixed_shape); + printf(" mpirun -n 2 ./adios2-global-array-1d-read-c \n"); + } +} + +int main(int argc, char *argv[]) +{ +#if ADIOS2_USE_MPI + init_mpi(123, argc, argv); +#endif + + { +#if ADIOS2_USE_MPI + + adios2_adios *adios = adios2_init_mpi(MPI_COMM_WORLD); +#else + adios2_adios *adios = adios2_init(); +#endif + reader(adios); + adios2_finalize(adios); + } + +#if ADIOS2_USE_MPI + finalize_mpi(); +#endif + + return 0; +} diff --git a/examples/basics/globalArray1D/globalArray1DWrite.F90 b/examples/basics/globalArray1D/globalArray1DWrite.F90 new file mode 100644 index 0000000000..90d0778909 --- /dev/null +++ b/examples/basics/globalArray1D/globalArray1DWrite.F90 @@ -0,0 +1,93 @@ +program adios2_global_array_1d_write + use mpivars + use adios2 + implicit none + integer, parameter :: numsteps = 5 + + ! ADIOS2 variables + type(adios2_adios) :: adios + + ! MPI then ADIOS2 initialization + call init_mpi(123) + call adios2_init(adios, app_comm, ierr) + + call writer() + + ! ADIOS2 then MPI finalization + call adios2_finalize(adios, ierr) + call finalize_mpi() + +contains + +subroutine writer + use mpivars + use decomp + use adios2 + implicit none + + type(adios2_io) :: io + type(adios2_engine) :: engine + type(adios2_variable) :: var_g + type(adios2_attribute) :: attr + integer :: step + + ! Application variables + ! g = 1D distributed array, + ! global shape and per-process size is fixed + + real*4, dimension(:), allocatable :: g + character(80), parameter :: ga = "Global Array with fixed shape and decomposition" + + integer, parameter :: mincount = 2, maxcount = 5 + integer*8, dimension(1) :: fixed_shape, fixed_start, fixed_count + + fixed_count(1) = get_random(mincount, maxcount) + allocate(g(fixed_count(1))) + call gather_decomp_1d(fixed_count(1), fixed_shape(1), fixed_start(1)) + + call adios2_declare_io (io, adios, 'output', ierr) + + call adios2_define_variable(var_g, io, "GlobalArray", & + adios2_type_real4, 1, & + fixed_shape, fixed_start, fixed_count, & + adios2_constant_dims, ierr) + + call adios2_define_attribute(attr, io, "GlobalArray/info", ga, ierr) + + call adios2_open(engine, io, "adios2-global-array-1d-f.bp", adios2_mode_write, ierr) + + write (*,100) "Decomp rank=", rank, & + " global shape = ", fixed_shape(1), & + " local count = ", fixed_count(1), & + " offset = ", fixed_start(1) +100 format (a,i2,a,i4,a,i1,a,i4) + + ! Computation/output loop + do step=0,numsteps-1 + g = rank + (step+1)/100.0 + ! Output all data + call adios2_begin_step(engine, adios2_step_mode_append, ierr) + call adios2_put(engine, var_g, g, ierr); + call adios2_end_step(engine, ierr) + enddo + + ! Close the output + call adios2_close(engine, ierr) + + deallocate(g) + + if (rank == 0) then + write (*,*) "Try the following: " + write (*,'(a,a,i4)') & + " bpls -la adios2-global-array-1d-f.bp ", & + "GlobalArray -d -n ", fixed_shape(1) + write (*,'(a,a,i4)') & + " bpls -la adios2-global-array-1d-f.bp ", & + "GlobalArray -d -t -n ", fixed_shape(1) + write (*,'(a)') & + " mpirun -n 2 ./adios2-global-array-1d-read-f " + endif +end subroutine writer + + +end program adios2_global_array_1d_write diff --git a/examples/basics/globalArray1D/globalArray1DWrite.c b/examples/basics/globalArray1D/globalArray1DWrite.c new file mode 100644 index 0000000000..4ae38ed3da --- /dev/null +++ b/examples/basics/globalArray1D/globalArray1DWrite.c @@ -0,0 +1,99 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * Created by Dmitry Ganyushin ganyushindi@ornl.gov + */ +#include "decomp.h" +#include "mpivars.h" +#include +#include +#include + +void writer(adios2_adios *adios) +{ + int step, i; + float *g; + const int mincount = 2; + const int maxcount = 5; + const int numsteps = 5; + adios2_step_status err; + + long long int fixed_shape = 0, fixed_start = 0, fixed_count = 0; + + /* Application variables + g = 1D distributed array, + global shape and per-process size is fixed */ + fixed_count = get_random(mincount, maxcount); + g = malloc((size_t)fixed_count * sizeof(float)); + gather_decomp_1d(&fixed_count, &fixed_shape, &fixed_start); + + adios2_io *io = adios2_declare_io(adios, "output"); + size_t shape[1]; + shape[0] = (size_t)fixed_shape; + + size_t start[1]; + start[0] = (size_t)fixed_start; + + size_t count[1]; + count[0] = (size_t)fixed_count; + + adios2_variable *var_g = adios2_define_variable(io, "GlobalArray", adios2_type_float, 1, shape, + start, count, adios2_constant_dims_true); + + adios2_engine *engine = adios2_open(io, "adios2-global-array-1d-c.bp", adios2_mode_write); + printf("Decmp rank = %d global shape = %lld local count = %lld offset = " + "%lld\n", + rank, fixed_shape, fixed_count, fixed_start); + for (step = 0; step < numsteps; step++) + { + for (i = 0; i < fixed_count; i++) + { + g[i] = (float)(rank + (step + 1) / 100.0); + } + + adios2_begin_step(engine, adios2_step_mode_append, 10.0f, &err); + adios2_put(engine, var_g, g, adios2_mode_deferred); + adios2_end_step(engine); + } + // Close the output + adios2_close(engine); + free(g); + + if (rank == 0) + { + printf("Try the following: \n"); + printf(" bpls -la adios2-global-array-1d-c.bp GlobalArray -d -n " + "%lld \n", + fixed_shape); + printf(" bpls -la adios2-global-array-1d-c.bp GlobalArray -d -t -n " + "%lld \n ", + fixed_shape); + printf(" mpirun -n 2 ./adios2-global-array-1d-read-c \n"); + } +} + +int main(int argc, char *argv[]) +{ +#if ADIOS2_USE_MPI + init_mpi(123, argc, argv); +#endif + + { +#if ADIOS2_USE_MPI + + adios2_adios *adios = adios2_init_mpi(MPI_COMM_WORLD); +#else + adios2_adios *adios = adios2_init(); +#endif + + writer(adios); + adios2_finalize(adios); + } + +#if ADIOS2_USE_MPI + finalize_mpi(); +#endif + + return 0; +} diff --git a/examples/basics/globalArray1D/mpivars.F90 b/examples/basics/globalArray1D/mpivars.F90 new file mode 100644 index 0000000000..323e4b0c15 --- /dev/null +++ b/examples/basics/globalArray1D/mpivars.F90 @@ -0,0 +1,30 @@ +module mpivars + implicit none + include 'mpif.h' + + integer:: app_comm, rank, nproc + integer:: wrank, wnproc + integer:: ierr + +contains + +subroutine init_mpi(color) + integer, intent(in):: color + call MPI_Init(ierr) + ! World comm spans all applications started with the same mpirun command + call MPI_Comm_rank(MPI_COMM_WORLD, wrank, ierr) + call MPI_Comm_size(MPI_COMM_WORLD, wnproc, ierr) + + ! Have to split and create a 'world' communicator for this app only + ! color must be unique for each application + call MPI_Comm_split (MPI_COMM_WORLD, color, wrank, app_comm, ierr) + call MPI_Comm_rank (app_comm, rank, ierr) + call MPI_Comm_size (app_comm, nproc , ierr) +end subroutine init_mpi + +subroutine finalize_mpi() + call MPI_Finalize(ierr) +end subroutine finalize_mpi + +end module mpivars + diff --git a/examples/basics/globalArray1D/mpivars.c b/examples/basics/globalArray1D/mpivars.c new file mode 100644 index 0000000000..5c4aa5634b --- /dev/null +++ b/examples/basics/globalArray1D/mpivars.c @@ -0,0 +1,29 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * Created by Dmitry Ganyushin ganyushindi@ornl.gov + */ +#include "mpivars.h" +#include + +int rank, nproc; +int wrank, wnproc; +MPI_Comm app_comm; + +void init_mpi(int color, int argc, char *argv[]) +{ + MPI_Init(&argc, &argv); + /* World comm spans all applications started with the same mpirun command */ + MPI_Comm_rank(MPI_COMM_WORLD, &wrank); + MPI_Comm_size(MPI_COMM_WORLD, &wnproc); + + /* Have to split and create a 'world' communicator for this app only + color must be unique for each application*/ + MPI_Comm_split(MPI_COMM_WORLD, color, wrank, &app_comm); + MPI_Comm_rank(app_comm, &rank); + MPI_Comm_size(app_comm, &nproc); + return; +} + +void finalize_mpi() { MPI_Finalize(); } diff --git a/examples/basics/globalArray1D/mpivars.h b/examples/basics/globalArray1D/mpivars.h new file mode 100644 index 0000000000..98c00586d3 --- /dev/null +++ b/examples/basics/globalArray1D/mpivars.h @@ -0,0 +1,14 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * Created by Dmitry Ganyushin ganyushindi@ornl.gov + */ +#ifndef ADIOS2EXAMPLES_MPIVARS_H +#define ADIOS2EXAMPLES_MPIVARS_H +#include +extern int rank, nproc; +extern MPI_Comm app_comm; +void init_mpi(int, int, char *argv[]); +void finalize_mpi(); +#endif // ADIOS2EXAMPLES_MPIVARS_H diff --git a/examples/basics/globalArrayND/globalArrayNDWrite.cpp b/examples/basics/globalArrayND/globalArrayNDWrite.cpp index 45c63c5c25..9832cc47ab 100644 --- a/examples/basics/globalArrayND/globalArrayNDWrite.cpp +++ b/examples/basics/globalArrayND/globalArrayNDWrite.cpp @@ -94,7 +94,8 @@ int main(int argc, char *argv[]) for (size_t i = 0; i < Nx; i++) { - row[i] = step * Nx * nproc * 1.0 + rank * Nx * 1.0 + (double)i; + row[i] = static_cast(step) * Nx * nproc * 1.0 + rank * Nx * 1.0 + + static_cast(i); } // Make a 2D selection to describe the local dimensions of the diff --git a/examples/basics/queryWorker/CMakeLists.txt b/examples/basics/queryWorker/CMakeLists.txt index 839dd19bf2..7cce9e5c4c 100644 --- a/examples/basics/queryWorker/CMakeLists.txt +++ b/examples/basics/queryWorker/CMakeLists.txt @@ -17,12 +17,10 @@ if(NOT TARGET adios2_core) list(APPEND _components MPI) endif() - find_package(ZeroMQ 4.1 QUIET) - find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) endif() -if(ADIOS2_HAVE_MPI AND ADIOS2_HAVE_DataMan) +if(ADIOS2_HAVE_MPI) add_executable(adios2_basics_queryWorker queryWorker.cpp) target_link_libraries(adios2_basics_queryWorker adios2::cxx11_mpi MPI::MPI_C) install(TARGETS adios2_basics_queryWorker RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) diff --git a/examples/basics/queryWorker/README.md b/examples/basics/queryWorker/README.md deleted file mode 100644 index 65b8042d3e..0000000000 --- a/examples/basics/queryWorker/README.md +++ /dev/null @@ -1,8 +0,0 @@ -q1.json is a json query file for one var - -q2.json is a composite query - -The bp*xml are the from heat transfer example with bp4 engine. -and tag is added at the end for xml query spec - -JSON query file option should be used with ADIOS2_HAVE_DATAMAN \ No newline at end of file diff --git a/examples/basics/queryWorker/queryWorker.cpp b/examples/basics/queryWorker/queryWorker.cpp index 2f172a18f0..9d878714b7 100644 --- a/examples/basics/queryWorker/queryWorker.cpp +++ b/examples/basics/queryWorker/queryWorker.cpp @@ -1,17 +1,16 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + */ + #include "adios2.h" #include #include -#include #include -#include -#include -#include #include #include -// #include "adios2/toolkit/query/Worker.h" - void queryWithStreaming(adios2::IO &queryIO, std::string &dataFileName, std::string &queryFile) { adios2::Engine reader = queryIO.Open(dataFileName, adios2::Mode::Read, MPI_COMM_WORLD); diff --git a/examples/basics/values/CMakeLists.txt b/examples/basics/values/CMakeLists.txt index 799c72cc54..f37b7da6ab 100644 --- a/examples/basics/values/CMakeLists.txt +++ b/examples/basics/values/CMakeLists.txt @@ -9,6 +9,15 @@ project(ADIOS2BasicsValuesExample) if(NOT TARGET adios2_core) set(_components C) + include(CheckLanguage) + check_language(Fortran) + if(CMAKE_Fortran_COMPILER) + enable_language(Fortran) + endif() + if(CMAKE_Fortran_COMPILER_LOADED) + list(APPEND _components Fortran) + endif() + find_package(MPI COMPONENTS ${_components}) if(MPI_FOUND) # Workaround for various MPI implementations forcing the link of C++ bindings @@ -29,4 +38,16 @@ if(ADIOS2_HAVE_MPI) add_executable(adios2_basics_valuesWrite_mpi valuesWrite.cpp) target_link_libraries(adios2_basics_valuesWrite_mpi adios2::cxx11_mpi MPI::MPI_C) install(TARGETS adios2_basics_valuesWrite_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + if(ADIOS2_HAVE_Fortran) + add_library(adios2_basics_values_mpivars_f OBJECT mpivars.F90) + target_link_libraries(adios2_basics_values_mpivars_f MPI::MPI_Fortran) + install(TARGETS adios2_basics_values_mpivars_f RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_executable(adios2_basics_values_f values.F90) + target_link_libraries(adios2_basics_values_f + adios2_basics_values_mpivars_f + adios2::fortran_mpi MPI::MPI_Fortran) + install(TARGETS adios2_basics_values_f RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + endif() endif() diff --git a/examples/basics/values/mpivars.F90 b/examples/basics/values/mpivars.F90 new file mode 100644 index 0000000000..323e4b0c15 --- /dev/null +++ b/examples/basics/values/mpivars.F90 @@ -0,0 +1,30 @@ +module mpivars + implicit none + include 'mpif.h' + + integer:: app_comm, rank, nproc + integer:: wrank, wnproc + integer:: ierr + +contains + +subroutine init_mpi(color) + integer, intent(in):: color + call MPI_Init(ierr) + ! World comm spans all applications started with the same mpirun command + call MPI_Comm_rank(MPI_COMM_WORLD, wrank, ierr) + call MPI_Comm_size(MPI_COMM_WORLD, wnproc, ierr) + + ! Have to split and create a 'world' communicator for this app only + ! color must be unique for each application + call MPI_Comm_split (MPI_COMM_WORLD, color, wrank, app_comm, ierr) + call MPI_Comm_rank (app_comm, rank, ierr) + call MPI_Comm_size (app_comm, nproc , ierr) +end subroutine init_mpi + +subroutine finalize_mpi() + call MPI_Finalize(ierr) +end subroutine finalize_mpi + +end module mpivars + diff --git a/examples/basics/values/values.F90 b/examples/basics/values/values.F90 new file mode 100644 index 0000000000..608ecf37b6 --- /dev/null +++ b/examples/basics/values/values.F90 @@ -0,0 +1,169 @@ +program adios2_values + use mpivars + use adios2 + implicit none + integer, parameter :: numsteps = 5 + ! ADIOS2 variables + type(adios2_adios) :: adios + + ! MPI then ADIOS2 initialization + call init_mpi(12345) + call adios2_init(adios, app_comm, ierr) + + call writer() + call reader() + + ! ADIOS2 then MPI finalization + call adios2_finalize(adios, ierr) + call finalize_mpi() + +contains + +subroutine writer + use mpivars + use adios2 + implicit none + + type(adios2_variable) :: var_gc, var_gv, var_lc, var_lv, var_gs + type(adios2_io) :: io + type(adios2_engine) :: engine + integer :: step + + ! Application variables + ! gc = Global Constant (a single value from the entire application, once per run (e.g. NPROC)) + ! gv = Global Value (a single value from the entire application, changes over time) + ! lc = Local Constant (one value per process, once per run (e.g. RANK)) + ! lv = Local Value (one value per process, changes over time) + ! gs = a string, same as a global value + integer :: gc, gv, lc, lv + character(len=80) :: gs + + call adios2_declare_io (io, adios, 'Values', ierr) + + call adios2_define_variable(var_gc, io, "GlobalConstant", adios2_type_integer4, ierr) + call adios2_define_variable(var_gv, io, "GlobalValue", adios2_type_integer4, ierr) + ! Local values will show up in reading as a 1D array of nproc elements + ! the write side definition is quite cumbersome in Fortran :-( + ! We have to define it almost like a distributed global array with a special + ! dimension value to indicate its type + call adios2_define_variable(var_lc, io, "LocalConstant", adios2_type_integer4, & + 1, (/ adios2_local_value_dim /), & + adios2_null_dims, & + adios2_null_dims, & + adios2_constant_dims, ierr) + + call adios2_define_variable(var_lv, io, "LocalValue", adios2_type_integer4, & + 1, (/ adios2_local_value_dim /), & + adios2_null_dims, & + adios2_null_dims, & + adios2_constant_dims, ierr) + + call adios2_define_variable(var_gs, io, "GlobalString", adios2_type_string, ierr) + + call adios2_open(engine, io, "adios2-values-f.bp", adios2_mode_write, ierr) + + ! Computation/output loop + gc = nproc + lc = rank + do step=0,numsteps-1 + gv = step + lv = nproc*(step)+rank + write (gs,'(a,i3)') "This is step ", step + + call adios2_begin_step(engine, adios2_step_mode_append, ierr) + if (step == 0) then + call adios2_put(engine, var_lc, lc, ierr); + if (rank == 0) then + ! could be written from every process but it is useless + call adios2_put(engine, var_gc, gc, ierr); + endif + endif + if (rank == 0) then + ! could be written from every process but it is useless + call adios2_put(engine, var_gv, gv, ierr); + call adios2_put(engine, var_gs, gs, ierr); + endif + call adios2_put(engine, var_lv, lv, ierr); + call adios2_end_step(engine, ierr) + enddo + + ! Close the output + call adios2_close(engine, ierr) + +end subroutine writer + + +subroutine reader + use mpivars + implicit none + + type(adios2_variable) :: var_gc, var_gv, var_lc, var_lv + type(adios2_io) :: io + type(adios2_engine) :: engine + integer*8 :: numsteps, i + integer*4 :: gc + integer*4, dimension(:), allocatable :: gvs, lcs + integer*4, dimension(:,:), allocatable :: lvs + character(len=80)::fmt + integer*8, dimension(:), allocatable :: shape_lv, shape_lc + integer :: ndims_lv, ndims_lc + + ! Note, every process reads everything in this example + + call adios2_declare_io(io, adios, "ValuesInput", ierr) + call adios2_open(engine, io, "adios2-values-f.bp", adios2_mode_read, MPI_COMM_SELF, ierr) + + call adios2_inquire_variable(var_gc, io, "GlobalConstant", ierr) + call adios2_get(engine, var_gc, gc , ierr) + + call adios2_inquire_variable(var_gv, io, "GlobalValue", ierr) + call adios2_variable_steps(numsteps, var_gv, ierr) + call adios2_set_step_selection(var_gv, 0_8, numsteps, ierr) + allocate(gvs(numsteps)) + call adios2_get(engine, var_gv, gvs , ierr) + + ! Read Local Values and Local Constants as a 1D array + ! shape array is allocated inside adios2_variable_shape() + + call adios2_inquire_variable(var_lc, io, "LocalConstant", ierr) + call adios2_variable_shape(shape_lc, ndims_lc, var_lc, ierr) + allocate(lcs(shape_lc(1))) + call adios2_get(engine, var_lc, lcs , ierr) + + call adios2_inquire_variable(var_lv, io, "LocalValue", ierr) + call adios2_variable_shape(shape_lv, ndims_lv, var_lv, ierr) + call adios2_set_step_selection(var_lv, 0_8, numsteps, ierr) + allocate(lvs(shape_lv(1),numsteps)) + call adios2_get(engine, var_lv, lvs , ierr) + + call adios2_close(engine, ierr) + + ! By default, get()s are deferred and content is available AFTER + ! adios2_close() or adios2_perform_gets() + ! Use adios2_mode_sync option in adios2_get() to get the content immediately + + if (rank == 0) then + write(*,'("Number of steps in file = ",i5)') numsteps + write(*,'("GlobalConstant = ", i5)') gc + + write(fmt,'(a,i5,a)') '(a18,',numsteps,'i4,a2)' + !write(*,'(a)') fmt + write(*,fmt) "GlobalValue(s) = [", gvs, " ]" + + write(fmt,'(a,i5,a)') '(a20,',shape_lc(1),'i4,a2)' + !write(*,'(a)') fmt + write(*,fmt) "LocalConstant(s) = [", lcs, " ]" + + write(fmt,'(a,i5,a)') '(a6,i3,a4,',shape_lv(1),'i4)' + !write(*,'(a)') fmt + write(*,'(a)') "LocalValues = [" + do i = 1, numsteps + write(*,fmt) " step", i-1, ":", lvs(:,i) + enddo + write(*,*) " ]" + endif + + deallocate(gvs, lcs, lvs) +end subroutine reader + +end program adios2_values diff --git a/examples/basics/variablesShapes/CMakeLists.txt b/examples/basics/variablesShapes/CMakeLists.txt new file mode 100644 index 0000000000..2dbd92f4fd --- /dev/null +++ b/examples/basics/variablesShapes/CMakeLists.txt @@ -0,0 +1,39 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2BasicsVariablesShapesExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +add_executable(adios2_basics_variablesShapes variablesShapes.cpp) +target_link_libraries(adios2_basics_variablesShapes adios2::cxx11) +install(TARGETS adios2_basics_variablesShapes RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + +add_executable(adios2_basics_variablesShapes_hl variablesShapes_hl.cpp) +target_link_libraries(adios2_basics_variablesShapes_hl adios2::cxx11) +install(TARGETS adios2_basics_variablesShapes_hl RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + +if(ADIOS2_HAVE_MPI) + add_executable(adios2_basics_variablesShapes_mpi variablesShapes.cpp) + target_link_libraries(adios2_basics_variablesShapes_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_basics_variablesShapes_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_executable(adios2_basics_variablesShapes_hl_mpi variablesShapes_hl.cpp) + target_link_libraries(adios2_basics_variablesShapes_hl_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_basics_variablesShapes_hl_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif() diff --git a/examples/basics/variablesShapes/variablesShapes.cpp b/examples/basics/variablesShapes/variablesShapes.cpp new file mode 100644 index 0000000000..6dce0f8fae --- /dev/null +++ b/examples/basics/variablesShapes/variablesShapes.cpp @@ -0,0 +1,269 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * * variablesShapes.cpp : adios2 low-level API example to write and read + * supported Variables shapes using stepping + * (streaming) mode + * + * Created on: Nov 14, 2019 + * Author: William F Godoy godoywf@ornl.gov + */ + +#include //std::size_t +#include // std::cout +#include // std::numeric_limits +#include //std::iota +#include //std::exception + +#include +#if ADIOS2_USE_MPI +#include +#endif + +void writer(adios2::ADIOS &adios, const std::size_t nx, const std::size_t nsteps, const int rank, + const int size) +{ + auto lf_compute = [](const std::size_t step, const std::size_t nx, + const int rank) -> std::vector { + const float value = static_cast(step + rank * nx); + std::vector array(nx); + std::iota(array.begin(), array.end(), value); + return array; + }; + + adios2::IO io = adios.DeclareIO("variables-shapes_writer"); + + // You can define variables according to: + // type : string, uint8_t, int8_t8, ... , float, double + // shape: global : value or array + // local : value (return a global array), array + + /********** GLOBAL VALUE *************/ + // string variables are always of value type, can't pass dimensions + adios2::Variable varGlobalValueString = + io.DefineVariable("GlobalValueString"); + + // global value can change on each step. Example: Step + adios2::Variable varStep = io.DefineVariable("Step"); + + /********** GLOBAL ARRAYS *************/ + // For a regular 1D decomposition: + + // 0*nx 1*nx 2*nx 3*nx shape (4*nx) + //--------//-------//--------//---------// + // nx nx nx nx + + // global shape -> this is the physical dimension across MPI processes + const adios2::Dims shape = {static_cast(size * nx)}; + + // local start for rank offset -> this is the local origin for the rank + // domain + const adios2::Dims start = {static_cast(rank * nx)}; + + // local count -> this is the local size from the local start for the rank + // domain + const adios2::Dims count = {nx}; + + // adios2::Dims is an alias to std::vector + // helps remember the inputs to adios2 functions DefineVariable (write) and + // SetSelection (read) make sure you always pass std::size_t types + + // global array with dimensions (shape, start, count) + // last argument indicates to adios2 that dimensions won't change + adios2::Variable varGlobalArray = + io.DefineVariable("GlobalArray", shape, start, count, adios2::ConstantDims); + + /********** LOCAL VALUE **************/ + // Independent values per rank at write, but presented as a global array at + // read Example: store current rank, but presented as an array of ranks + adios2::Variable varLocalValueInt32 = + io.DefineVariable("Rank", {adios2::LocalValueDim}); + + /********** LOCAL ARRAY **************/ + // Independent values and dimensions per rank, there is no notion of + // "continuity", each start from 0-origin to count. Example: mesh + // nodes-per-rank + adios2::Variable varLocalArray = + io.DefineVariable("LocalArray", {}, {}, count, adios2::ConstantDims); + + adios2::Engine writer = io.Open("variables-shapes.bp", adios2::Mode::Write); + + for (size_t step = 0; step < nsteps; ++step) + { + // this part mimics the compute portion in an application + const std::vector array = lf_compute(step, nx, rank); + + // ADIOS2 I/O portion + + // BeginStep/EndStep is the streaming API -> supported by all engines + writer.BeginStep(); + + // minimize global and local values footprint, by only one rank putting + // the variables + if (rank == 0) + { + // Global value changing over steps + writer.Put(varStep, static_cast(step)); + + if (step == 0) + { + // Global absolute value + writer.Put(varGlobalValueString, std::string("ADIOS2 Basics Variable Example")); + // Local absolute value + writer.Put(varLocalValueInt32, static_cast(rank)); + } + } + + // for this example all ranks put a global and a local array + writer.Put(varGlobalArray, array.data()); + writer.Put(varLocalArray, array.data()); + writer.EndStep(); + } + writer.Close(); +} + +void reader(adios2::ADIOS &adios, const int rank, const int size) +{ + adios2::IO io = adios.DeclareIO("variables-shapes_reader"); + // all ranks opening the bp file have access to the entire metadata + adios2::Engine reader = io.Open("variables-shapes.bp", adios2::Mode::Read); + + // reading in streaming mode + while (reader.BeginStep() != adios2::StepStatus::EndOfStream) + { + // scope between BeginStep and EndStep is only for the current step + const size_t currentStep = reader.CurrentStep(); + + // Typical flow: InquireVariable + adios2::Variable varStep = io.InquireVariable("Step"); + uint64_t step = std::numeric_limits::max(); + // check Variable existence + if (varStep) + { + if (rank == 0) + { + // variable objects are "printable" reporting Name and Type + std::cout << "Found Global Value " << varStep << " in step " << currentStep << "\n"; + // output: Found Global Value Variable(Name: "Step") + // in step 0 + } + reader.Get(varStep, step); + } + + // GlobalValueString + adios2::Variable varGlobalValueString = + io.InquireVariable("GlobalValueString"); + std::string globalValueString; + // check Variable existence and Get + if (varGlobalValueString) + { + if (rank == 0) + { + std::cout << "Found Global Value " << varGlobalValueString << " in step " + << currentStep << "\n"; + } + reader.Get(varGlobalValueString, globalValueString); + } + + // Global Arrays at read from local values at write + adios2::Variable varRanks = io.InquireVariable("Ranks"); + std::vector ranks; + if (varRanks) + { + if (rank == 0) + { + std::cout << "Found Global Array " << varRanks << " in step " << currentStep + << "\n"; + } + // passing a vector convenience: adios2 would resize it + // automatically + reader.Get(varRanks, ranks); + } + + // Global Array + adios2::Variable varGlobalArray = io.InquireVariable("GlobalArray"); + std::vector globalArray; + if (varGlobalArray) + { + if (rank == 0) + { + std::cout << "Found GlobalArray " << varGlobalArray << " in step " << currentStep + << "\n"; + } + reader.Get(varGlobalArray, globalArray); + } + + // Local Array + adios2::Variable varLocalArray = io.InquireVariable("LocalArray"); + std::vector localArray; + if (varLocalArray) + { + // local arrays require an extra step to select the block of + // interest (0 is default) we only select block 0 in this example + varLocalArray.SetBlockSelection(0); + if (rank == 0) + { + std::cout << "Found LocalArray " << varLocalArray << " in step " << currentStep + << "\n"; + } + reader.Get(varLocalArray, localArray); + } + + // since all Get calls are "deferred" all the data would be populated at + // EndStep + reader.EndStep(); + + // data is available + + if (rank == 0) + { + std::cout << "\n"; + } + } + + reader.Close(); +} + +int main(int argc, char *argv[]) +{ +#if ADIOS2_USE_MPI + MPI_Init(&argc, &argv); +#endif + + int rank = 0; + int size = 1; + +#if ADIOS2_USE_MPI + MPI_Comm_rank(MPI_COMM_WORLD, &rank); + MPI_Comm_size(MPI_COMM_WORLD, &size); +#endif + + try + { +#if ADIOS2_USE_MPI + adios2::ADIOS adios(MPI_COMM_WORLD); +#else + adios2::ADIOS adios; +#endif + + constexpr std::size_t nx = 10; + constexpr std::size_t nsteps = 3; + + writer(adios, nx, nsteps, rank, size); + reader(adios, rank, size); + } + catch (const std::exception &e) + { + std::cout << "ERROR: ADIOS2 exception: " << e.what() << "\n"; +#if ADIOS2_USE_MPI + MPI_Abort(MPI_COMM_WORLD, -1); +#endif + } + +#if ADIOS2_USE_MPI + MPI_Finalize(); +#endif + + return 0; +} diff --git a/examples/basics/variablesShapes/variablesShapes_hl.cpp b/examples/basics/variablesShapes/variablesShapes_hl.cpp new file mode 100644 index 0000000000..5977b2c311 --- /dev/null +++ b/examples/basics/variablesShapes/variablesShapes_hl.cpp @@ -0,0 +1,194 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * variablesShapes_hl.cpp : adios2 high-level API example to write and read + * supported Variables shapes using stepping (streaming) mode + * + * Created on: Nov 14, 2019 + * Author: William F Godoy godoywf@ornl.gov + */ + +#include //std::size_t +#include // std::cout +#include // std::numeric_limits +#include //std::iota +#include //std::exception + +#include +#if ADIOS2_USE_MPI +#include +#endif + +void writer(const std::size_t nx, const std::size_t nsteps, const int rank, const int size) +{ + auto lf_compute = [](const std::size_t step, const std::size_t nx, + const int rank) -> std::vector { + const float value = static_cast(step + rank * nx); + std::vector array(nx); + std::iota(array.begin(), array.end(), value); + return array; + }; + + // You can define variables according to: + // type : string, uint8_t, int8_t8, ... , float, double + // shape: global : value or array + // local : value (return a global array), array + + // global shape -> this is the physical dimension across MPI processes + const adios2::Dims shape = {static_cast(size * nx)}; + + // local start for rank offset -> this is the local origin for the rank + // domain + const adios2::Dims start = {static_cast(rank * nx)}; + + // local count -> this is the local size from the local start for the rank + // domain + const adios2::Dims count = {nx}; + + // adios2::Dims is an alias to std::vector + // helps remember the inputs to adios2 functions DefineVariable (write) and + // SetSelection (read) make sure you always pass std::size_t types + +#if ADIOS2_USE_MPI + adios2::fstream out("variables-shapes_hl.bp", adios2::fstream::out, MPI_COMM_WORLD); +#else + adios2::fstream out("variables-shapes_hl.bp", adios2::fstream::out); +#endif + + for (size_t step = 0; step < nsteps; ++step) + { + // this part mimics the compute portion in an application + const std::vector array = lf_compute(step, nx, rank); + + // ADIOS2 I/O portion + + // minimize global and local values footprint, by only one rank writing + // the variables + if (rank == 0) + { + // Global value changing over steps + out.write("Step", static_cast(step)); + + if (step == 0) + { + // Constant Global value + out.write("GlobalValueString", std::string("ADIOS2 Basics Variable Example")); + + // Constant Local value + out.write("LocalValueInt32", static_cast(rank), adios2::LocalValue); + } + } + + // for this example all ranks write a global and a local array + out.write("GlobalArray", array.data(), shape, start, count); + out.write("LocalArray", array.data(), {}, {}, count); + + out.end_step(); + } + out.close(); +} + +void reader(const int rank, const int size) +{ + auto lf_ArrayToString = [](const std::vector &array) -> std::string { + std::string contents = "{ "; + for (const float value : array) + { + contents += std::to_string(static_cast(value)) + " "; + } + contents += "}"; + return contents; + }; + +// all ranks opening the bp file have access to the entire metadata +#if ADIOS2_USE_MPI + adios2::fstream in("variables-shapes_hl.bp", adios2::fstream::in, MPI_COMM_WORLD); +#else + adios2::fstream in("variables-shapes_hl.bp", adios2::fstream::in); +#endif + + // reading in streaming mode, supported by all engines + // similar to std::getline in std::fstream + adios2::fstep inStep; + while (adios2::getstep(in, inStep)) + { + const std::size_t currentStep = inStep.current_step(); + + const std::vector steps = inStep.read("Step"); + if (!steps.empty() && rank == 0) + { + std::cout << "Found Step " << steps.front() << " in currentStep " << currentStep + << "\n"; + } + + const std::vector globalValueString = + inStep.read("GlobalValueString"); + if (!globalValueString.empty() && rank == 0) + { + std::cout << "Found GlobalValueString " << globalValueString.front() + << " in currentStep " << currentStep << "\n"; + } + + const std::vector ranks = inStep.read("Ranks"); + if (!ranks.empty() && rank == 0) + { + std::cout << "Found rank " << ranks.front() << " in currentStep " << currentStep + << "\n"; + } + + const std::vector globalArray = inStep.read("GlobalArray"); + if (!globalArray.empty() && rank == 0) + { + std::cout << "Found globalArray " << lf_ArrayToString(globalArray) + " in currentStep " + << currentStep << "\n"; + } + + // default reads block 0 + const std::vector localArray = inStep.read("LocalArray"); + if (!localArray.empty() && rank == 0) + { + std::cout << "Found localArray " << lf_ArrayToString(localArray) + " in currentStep " + << currentStep << "\n"; + } + // indicate end of adios2 operations for this step + in.end_step(); + } + in.close(); +} + +int main(int argc, char *argv[]) +{ +#if ADIOS2_USE_MPI + MPI_Init(&argc, &argv); +#endif + int rank = 0; + int size = 1; + +#if ADIOS2_USE_MPI + MPI_Comm_rank(MPI_COMM_WORLD, &rank); + MPI_Comm_size(MPI_COMM_WORLD, &size); +#endif + + try + { + constexpr std::size_t nx = 10; + constexpr std::size_t nsteps = 3; + + writer(nx, nsteps, rank, size); + reader(rank, size); + } + catch (std::exception &e) + { + std::cout << "ERROR: ADIOS2 exception: " << e.what() << "\n"; +#if ADIOS2_USE_MPI + MPI_Abort(MPI_COMM_WORLD, -1); +#endif + } + +#if ADIOS2_USE_MPI + MPI_Finalize(); +#endif + + return 0; +} diff --git a/examples/hello/CMakeLists.txt b/examples/hello/CMakeLists.txt index dd90609718..297ed51882 100644 --- a/examples/hello/CMakeLists.txt +++ b/examples/hello/CMakeLists.txt @@ -11,9 +11,23 @@ if(ADIOS2_HAVE_MPI) endif() add_subdirectory(bpReader) +add_subdirectory(bpThreadWrite) add_subdirectory(bpTimeWriter) add_subdirectory(bpWriter) +if(ADIOS2_HAVE_CUDA OR ADIOS2_HAVE_Kokkos_CUDA) + add_subdirectory(bpWriteReadCuda) +endif() + +find_package(hip QUIET) +if(ADIOS2_HAVE_Kokkos_HIP OR hip_FOUND) + add_subdirectory(bpWriteReadHip) +endif() + +if(ADIOS2_HAVE_Kokkos) + add_subdirectory(bpWriteReadKokkos) +endif() + if(ADIOS2_HAVE_DataMan) add_subdirectory(datamanReader) add_subdirectory(datamanWriter) @@ -32,6 +46,8 @@ if(ADIOS2_HAVE_HDF5) endif() endif() +add_subdirectory(helloWorld) + if(ADIOS2_HAVE_Fortran) add_subdirectory(inlineFWriteCppRead) endif() diff --git a/examples/hello/bpThreadWrite/CMakeLists.txt b/examples/hello/bpThreadWrite/CMakeLists.txt new file mode 100644 index 0000000000..bc7fd8fb1b --- /dev/null +++ b/examples/hello/bpThreadWrite/CMakeLists.txt @@ -0,0 +1,21 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloThreadWriteExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(Threads QUIET) + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(Threads_FOUND) + add_executable(adios2_hello_bpThreadWrite bpThreadWrite.cpp) + target_link_libraries(adios2_hello_bpThreadWrite adios2::cxx11 ${CMAKE_THREAD_LIBS_INIT}) + install(TARGETS adios2_hello_bpThreadWrite RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif() diff --git a/examples/hello/bpThreadWrite/bpThreadWrite.cpp b/examples/hello/bpThreadWrite/bpThreadWrite.cpp new file mode 100644 index 0000000000..f29c288879 --- /dev/null +++ b/examples/hello/bpThreadWrite/bpThreadWrite.cpp @@ -0,0 +1,122 @@ + +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * bpThreadWrite.cpp : adios2 low-level API example to write in a threaded + * application using C++11 thread and having adios2 calls + * inside mutex regions adios2 API are not thread-safe: + * 1. launching MPI from a thread is not possible on many + * supercomputers + * 2. I/O is highly serialized (buffering and low-level I/O + * calls), therefore users must be aware that adios2 might introduce + * bottlenecks. To run: Do not use MPI, just run the executable + * ./adios2_hello_bpThreadWrite + * + * Created on: Nov 14, 2019 + * Author: William F Godoy godoywf@ornl.gov + */ + +#include + +#include //std::size_t +#include +#include +#include +#include +#include + +namespace +{ + +std::mutex mutex; + +// tasks that runs on thread, each section of the vector is covered +template +void ThreadTask(const std::size_t threadID, std::vector &data, const std::size_t startIndex, + const std::size_t localSize, const std::string &variableName, adios2::IO io, + adios2::Engine engine) +{ + (void)threadID; // unused variable + // populate vector data, but simply adding step to index + for (std::size_t i = 0; i < localSize; ++i) + { + const std::size_t index = startIndex + i; + data[index] = static_cast(index); + } + + // I/O write region in a locked mutex + { + mutex.lock(); + + adios2::Variable variable = io.InquireVariable(variableName); + variable.SetSelection({{startIndex}, {localSize}}); + + engine.Put(variable, &data[startIndex]); + // PerformPuts must be called to collect memory per buffer + engine.PerformPuts(); + + mutex.unlock(); + } +} + +} // end namespace + +int main(int argc, char *argv[]) +{ + try + { + constexpr std::size_t nx = 100; + // data to be populated and written per thread + std::vector data(nx); + + // initialize adios2 objects serially + adios2::ADIOS adios; + adios2::IO io = adios.DeclareIO("thread-write"); + // populate shape, leave start and count empty as + // they will come from each thread SetSelection + const std::string variableName = "data"; + io.DefineVariable(variableName, adios2::Dims{nx}, adios2::Dims(), adios2::Dims()); + + adios2::Engine engine = io.Open("thread-writes.bp", adios2::Mode::Write); + + // set up thread tasks + // just grab maximum number of threads to simplify things + const auto nthreads = static_cast(std::thread::hardware_concurrency()); + std::vector threadTasks; + threadTasks.reserve(nthreads); + + // launch threaded tasks (this is what OpenMP would simplify) + // elements per thread + const std::size_t stride = nx / nthreads; + // elements for last thread, add remainder + const std::size_t last = stride + nx % nthreads; + + // launch threads + for (std::size_t t = 0; t < nthreads; ++t) + { + const std::size_t startIndex = stride * t; + // non-inclusive endIndex + const std::size_t localSize = (t == nthreads - 1) ? last : stride; + + // use std::ref to pass things by reference + // adios2 objects can be passed by value + + threadTasks.emplace_back(ThreadTask, t, std::ref(data), startIndex, localSize, + std::ref(variableName), io, engine); + } + + for (auto &threadTask : threadTasks) + { + threadTask.join(); + } + + engine.Close(); + } + catch (std::exception &e) + { + std::cout << "ERROR: ADIOS2 exception: " << e.what() << "\n"; + } + + return 0; +} diff --git a/examples/hello/bpWriteReadHip/CMakeLists.txt b/examples/hello/bpWriteReadHip/CMakeLists.txt new file mode 100644 index 0000000000..431f1586e1 --- /dev/null +++ b/examples/hello/bpWriteReadHip/CMakeLists.txt @@ -0,0 +1,25 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloBPWriteReadHipExample) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(hip QUIET) + if(hip_FOUND) + enable_language(HIP) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +if(ADIOS2_HAVE_Kokkos_HIP OR hip_FOUND) + add_executable(adios2_hello_bpWriteReadHip bpWriteReadHip.cpp) + target_link_libraries(adios2_hello_bpWriteReadHip adios2::cxx11 hip::runtime) + set_target_properties(adios2_hello_bpWriteReadHip PROPERTIES LANGUAGE "HIP") + install(TARGETS adios2_hello_bpWriteReadHip RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif() diff --git a/examples/hello/bpWriteReadHip/bpWriteReadHip.cpp b/examples/hello/bpWriteReadHip/bpWriteReadHip.cpp new file mode 100644 index 0000000000..99e3e94bf3 --- /dev/null +++ b/examples/hello/bpWriteReadHip/bpWriteReadHip.cpp @@ -0,0 +1,135 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + */ +#include +#include +#include +#include + +#include + +#include + +__global__ void hip_initialize(float *vec) { vec[hipBlockIdx_x] = hipBlockIdx_x; } + +__global__ void hip_increment(float *vec, float val) { vec[hipBlockIdx_x] += val; } + +int BPWrite(const std::string fname, const size_t N, int nSteps, const std::string engine) +{ + hipError_t hipExit; + float *gpuSimData; + hipExit = hipMalloc((void **)&gpuSimData, N * sizeof(float)); + if (hipExit != hipSuccess) + { + std::cout << "[BPWrite] error: " << hipGetErrorString(hipExit) << std::endl; + return 1; + } + hipLaunchKernelGGL(hip_initialize, dim3(N), dim3(1), 0, 0, gpuSimData); + hipExit = hipDeviceSynchronize(); + if (hipExit != hipSuccess) + { + std::cout << "[BPWrite] error: " << hipGetErrorString(hipExit) << std::endl; + return 1; + } + + adios2::ADIOS adios; + adios2::IO io = adios.DeclareIO("WriteIO"); + io.SetEngine(engine); + + const adios2::Dims shape{static_cast(N)}; + const adios2::Dims start{static_cast(0)}; + const adios2::Dims count{N}; + auto data = io.DefineVariable("data", shape, start, count); + + adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); + + for (size_t step = 0; step < nSteps; ++step) + { + adios2::Box sel({0}, {N}); + data.SetSelection(sel); + + bpWriter.BeginStep(); + bpWriter.Put(data, gpuSimData); + bpWriter.EndStep(); + + hipLaunchKernelGGL(hip_increment, dim3(N), dim3(1), 0, 0, gpuSimData, 10); + hipExit = hipDeviceSynchronize(); + if (hipExit != hipSuccess) + { + std::cout << "[BPWrite] error: " << hipGetErrorString(hipExit) << std::endl; + return 1; + } + } + + bpWriter.Close(); + return 0; +} + +int BPRead(const std::string fname, const size_t N, int nSteps, const std::string engine) +{ + hipError_t hipExit; + adios2::ADIOS adios; + adios2::IO io = adios.DeclareIO("ReadIO"); + io.SetEngine(engine); + + adios2::Engine bpReader = io.Open(fname, adios2::Mode::Read); + + unsigned int step = 0; + float *gpuSimData; + hipExit = hipMalloc((void **)&gpuSimData, N * sizeof(float)); + if (hipExit != hipSuccess) + { + std::cout << "[BPWrite] error: " << hipGetErrorString(hipExit) << std::endl; + return 1; + } + for (; bpReader.BeginStep() == adios2::StepStatus::OK; ++step) + { + auto data = io.InquireVariable("data"); + const adios2::Dims start{0}; + const adios2::Dims count{N}; + const adios2::Box sel(start, count); + data.SetSelection(sel); + + bpReader.Get(data, gpuSimData); + bpReader.EndStep(); + + std::vector cpuData(N); + hipExit = hipMemcpy(cpuData.data(), gpuSimData, N * sizeof(float), hipMemcpyDeviceToHost); + if (hipExit != hipSuccess) + { + std::cout << "[BPWrite] error: " << hipGetErrorString(hipExit) << std::endl; + return 1; + } + std::cout << "Simualation step " << step << " : "; + std::cout << cpuData.size() << " elements: " << cpuData[0]; + std::cout << " " << cpuData[1] << " ... "; + std::cout << cpuData[cpuData.size() - 1] << std::endl; + } + bpReader.Close(); + return 0; +} + +int main(int argc, char **argv) +{ + hipError_t hipExit; + const int device_id = 0; + hipExit = hipSetDevice(device_id); + if (hipExit != hipSuccess) + { + std::cout << "[BPWrite] error: " << hipGetErrorString(hipExit) << std::endl; + return 1; + } + const std::vector list_of_engines = {"BP4", "BP5"}; + const size_t N = 6000; + int nSteps = 2, ret = 0; + + for (auto engine : list_of_engines) + { + std::cout << "Using engine " << engine << std::endl; + const std::string fname(engine + "_HIP_WR.bp"); + ret += BPWrite(fname, N, nSteps, engine); + ret += BPRead(fname, N, nSteps, engine); + } + return ret; +} diff --git a/examples/hello/bpWriteReadKokkos/CMakeLists.txt b/examples/hello/bpWriteReadKokkos/CMakeLists.txt new file mode 100644 index 0000000000..a8e810b734 --- /dev/null +++ b/examples/hello/bpWriteReadKokkos/CMakeLists.txt @@ -0,0 +1,33 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloBPWriteReadKokkosExample) + +# CXX Compiler settings only in for this example +set(CMAKE_CXX_STANDARD 17) +set(CMAKE_CXX_STANDARD_REQUIRED ON) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(Kokkos 3.7 QUIET) + if(Kokkos_FOUND AND DEFINED Kokkos_CXX_COMPILER) + set(CMAKE_CXX_COMPILER "${Kokkos_CXX_COMPILER}") + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +else() + if(DEFINED Kokkos_CXX_COMPILER) + set(CMAKE_CXX_COMPILER "${Kokkos_CXX_COMPILER}") + endif() +endif() + +if(ADIOS2_HAVE_Kokkos) + add_executable(adios2_hello_bpWriteReadKokkos bpWriteReadKokkos.cpp) + kokkos_compilation(SOURCE bpWriteReadKokkos.cpp) + target_link_libraries(adios2_hello_bpWriteReadKokkos adios2::cxx11 Kokkos::kokkos) + install(TARGETS adios2_hello_bpWriteReadKokkos RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif() diff --git a/examples/hello/bpWriteReadKokkos/bpWriteReadKokkos.cpp b/examples/hello/bpWriteReadKokkos/bpWriteReadKokkos.cpp new file mode 100644 index 0000000000..7f837d6538 --- /dev/null +++ b/examples/hello/bpWriteReadKokkos/bpWriteReadKokkos.cpp @@ -0,0 +1,117 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + */ +#include +#include +#include + +#include + +#include + +int BPWrite(const std::string fname, const size_t N, int nSteps, const std::string engine) +{ + // Initialize the simulation data with the default memory space + using mem_space = Kokkos::DefaultExecutionSpace::memory_space; + Kokkos::View gpuSimData("simBuffer", N); + Kokkos::parallel_for( + "initBuffer", Kokkos::RangePolicy(0, N), + KOKKOS_LAMBDA(int i) { gpuSimData(i) = static_cast(i); }); + Kokkos::fence(); + + // Set up the ADIOS structures + adios2::ADIOS adios; + adios2::IO io = adios.DeclareIO("WriteIO"); + io.SetEngine(engine); + + const adios2::Dims shape{static_cast(N)}; + const adios2::Dims start{static_cast(0)}; + const adios2::Dims count{N}; + auto data = io.DefineVariable("data", shape, start, count); + + adios2::Engine bpWriter = io.Open(fname, adios2::Mode::Write); + + // Simulation steps + for (int step = 0; step < nSteps; ++step) + { + // Make a 1D selection to describe the local dimensions of the + // variable we write and its offsets in the global spaces + adios2::Box sel({0}, {N}); + data.SetSelection(sel); + + // Start IO step every write step + bpWriter.BeginStep(); + bpWriter.Put(data, gpuSimData.data()); + bpWriter.EndStep(); + + // Update values in the simulation data using the default + // execution space + Kokkos::parallel_for( + "updateBuffer", Kokkos::RangePolicy(0, N), + KOKKOS_LAMBDA(int i) { gpuSimData(i) += 10; }); + Kokkos::fence(); + } + + bpWriter.Close(); + Kokkos::DefaultExecutionSpace exe_space; + std::cout << "Done writing on memory space: " << exe_space.name() << std::endl; + return 0; +} + +int BPRead(const std::string fname, const size_t N, int nSteps, const std::string engine) +{ + // Create ADIOS structures + adios2::ADIOS adios; + adios2::IO io = adios.DeclareIO("ReadIO"); + io.SetEngine(engine); + + Kokkos::DefaultExecutionSpace exe_space; + std::cout << "Read on memory space: " << exe_space.name() << std::endl; + + adios2::Engine bpReader = io.Open(fname, adios2::Mode::Read); + + unsigned int step = 0; + using mem_space = Kokkos::DefaultExecutionSpace::memory_space; + Kokkos::View gpuSimData("simBuffer", N); + for (; bpReader.BeginStep() == adios2::StepStatus::OK; ++step) + { + auto data = io.InquireVariable("data"); + const adios2::Dims start{0}; + const adios2::Dims count{N}; + const adios2::Box sel(start, count); + data.SetSelection(sel); + + bpReader.Get(data, gpuSimData.data()); + bpReader.EndStep(); + + auto cpuData = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace{}, gpuSimData); + std::cout << "Simualation step " << step << " : "; + std::cout << cpuData.size() << " elements: " << cpuData[0]; + std::cout << " " << cpuData[1] << " ... "; + std::cout << cpuData[cpuData.size() - 1] << std::endl; + } + + bpReader.Close(); + return 0; +} + +int main(int argc, char **argv) +{ + const std::vector list_of_engines = {"BP4", "BP5"}; + const size_t N = 6000; + int nSteps = 2, ret = 0; + + Kokkos::initialize(argc, argv); + { + for (auto engine : list_of_engines) + { + std::cout << "Using engine " << engine << std::endl; + const std::string fname(engine + "_Kokkos_WR.bp"); + ret += BPWrite(fname, N, nSteps, engine); + ret += BPRead(fname, N, nSteps, engine); + } + } + Kokkos::finalize(); + return ret; +} diff --git a/examples/hello/helloWorld/CMakeLists.txt b/examples/hello/helloWorld/CMakeLists.txt new file mode 100644 index 0000000000..416d0d5b26 --- /dev/null +++ b/examples/hello/helloWorld/CMakeLists.txt @@ -0,0 +1,47 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2HelloHelloWorldExample) + +if(NOT TARGET adios2_core) + set(_components C CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +endif() + +add_executable(adios2_hello_helloWorld_c hello-world.c) +target_link_libraries(adios2_hello_helloWorld_c adios2::c) +install(TARGETS adios2_hello_helloWorld_c RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + +add_executable(adios2_hello_helloWorld hello-world.cpp) +target_link_libraries(adios2_hello_helloWorld adios2::cxx11) +install(TARGETS adios2_hello_helloWorld RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + +add_executable(adios2_hello_helloWorld_hl hello-world-hl.cpp) +target_link_libraries(adios2_hello_helloWorld_hl adios2::cxx11) +install(TARGETS adios2_hello_helloWorld_hl RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + +if(ADIOS2_HAVE_MPI) + add_executable(adios2_hello_helloWorld_c_mpi hello-world.c) + target_link_libraries(adios2_hello_helloWorld_c_mpi adios2::c_mpi MPI::MPI_C) + install(TARGETS adios2_hello_helloWorld_c_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_executable(adios2_hello_helloWorld_mpi hello-world.cpp) + target_link_libraries(adios2_hello_helloWorld_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_helloWorld_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) + + add_executable(adios2_hello_helloWorld_hl_mpi hello-world-hl.cpp) + target_link_libraries(adios2_hello_helloWorld_hl_mpi adios2::cxx11_mpi MPI::MPI_C) + install(TARGETS adios2_hello_helloWorld_hl_mpi RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif() diff --git a/examples/hello/helloWorld/hello-world-hl.cpp b/examples/hello/helloWorld/hello-world-hl.cpp new file mode 100644 index 0000000000..d1a4f2c05f --- /dev/null +++ b/examples/hello/helloWorld/hello-world-hl.cpp @@ -0,0 +1,75 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * hello-world-hl.cpp : adios2 high-level API example to write and read a + * std::string Variable with a greeting + * + * Created on: Nov 14, 2019 + * Author: William F Godoy godoywf@ornl.gov + */ + +#include +#include + +#include +#if ADIOS2_USE_MPI +#include +#endif + +void writer(const std::string &greeting) +{ +#if ADIOS2_USE_MPI + adios2::fstream out("hello-world-hl-cpp.bp", adios2::fstream::out, MPI_COMM_WORLD); +#else + adios2::fstream out("hello-world-hl-cpp.bp", adios2::fstream::out); +#endif + + out.write("Greeting", greeting); + out.close(); +} + +std::string reader() +{ +#if ADIOS2_USE_MPI + adios2::fstream in("hello-world-hl-cpp.bp", adios2::fstream::in, MPI_COMM_WORLD); +#else + adios2::fstream in("hello-world-hl-cpp.bp", adios2::fstream::in); +#endif + + for (adios2::fstep iStep; adios2::getstep(in, iStep);) + { + const std::vector greetings = in.read("Greeting"); + return greetings.front(); + } + return ""; +} + +int main(int argc, char *argv[]) +{ +#if ADIOS2_USE_MPI + MPI_Init(&argc, &argv); +#endif + + try + { + const std::string greeting = "Hello World from ADIOS2"; + writer(greeting); + + const std::string message = reader(); + std::cout << message << "\n"; + } + catch (std::exception &e) + { + std::cout << "ERROR: ADIOS2 exception: " << e.what() << "\n"; +#if ADIOS2_USE_MPI + MPI_Abort(MPI_COMM_WORLD, -1); +#endif + } + +#if ADIOS2_USE_MPI + MPI_Finalize(); +#endif + + return 0; +} diff --git a/examples/hello/helloWorld/hello-world-hl.py b/examples/hello/helloWorld/hello-world-hl.py new file mode 100644 index 0000000000..825fb5282e --- /dev/null +++ b/examples/hello/helloWorld/hello-world-hl.py @@ -0,0 +1,47 @@ +# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +# +# hello-world.py : adios2 high-level API example to write and read a +# string Variable with a greeting +# +# Created on: 2/2/2021 +# Author: Dmitry Ganyushin ganyushindi@ornl.gov +# +import sys +from mpi4py import MPI +import adios2 + +DATA_FILENAME = "hello-world-hl-py.bp" +# MPI +comm = MPI.COMM_WORLD +rank = comm.Get_rank() +size = comm.Get_size() + + +def writer(greeting): + """write a string to a bp file""" + with adios2.open(DATA_FILENAME, "w", comm) as fh: + fh.write("Greeting", greeting, end_step=True) + return 0 + + +def reader(): + """read a string from to a bp file""" + with adios2.open(DATA_FILENAME, "r", comm) as fh: + for fstep in fh: + message = fstep.read_string("Greeting") + return message + + +def main(): + """driver function""" + greeting = "Hello World from ADIOS2" + writer(greeting) + message = reader() + print("{}".format(message)) + return 0 + + +if __name__ == "__main__": + sys.exit(main()) diff --git a/examples/hello/helloWorld/hello-world.c b/examples/hello/helloWorld/hello-world.c new file mode 100644 index 0000000000..6c14ea65ad --- /dev/null +++ b/examples/hello/helloWorld/hello-world.c @@ -0,0 +1,71 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * hello-world.c : adios2 C API example to write and read a + * char* Variable with a greeting + * + * Created on: Nov 14, 2019 + * Author: William F Godoy godoywf@ornl.gov + */ + +#include //printf +#include //malloc, free + +#include +#if ADIOS2_USE_MPI +#include +#endif + +void writer(adios2_adios *adios, const char *greeting) +{ + adios2_io *io = adios2_declare_io(adios, "hello-world-writer"); + adios2_variable *var_greeting = adios2_define_variable( + io, "Greeting", adios2_type_string, 0, NULL, NULL, NULL, adios2_constant_dims_true); + + adios2_engine *engine = adios2_open(io, "hello-world-c.bp", adios2_mode_write); + adios2_put(engine, var_greeting, greeting, adios2_mode_deferred); + adios2_close(engine); +} + +void reader(adios2_adios *adios, char *greeting) +{ + adios2_step_status status; + adios2_io *io = adios2_declare_io(adios, "hello-world-reader"); + adios2_engine *engine = adios2_open(io, "hello-world-c.bp", adios2_mode_read); + adios2_variable *var_greeting = adios2_inquire_variable(io, "Greeting"); + adios2_begin_step(engine, adios2_step_mode_read, -1., &status); + adios2_get(engine, var_greeting, greeting, adios2_mode_deferred); + adios2_end_step(engine); + adios2_close(engine); +} + +int main(int argc, char *argv[]) +{ +#if ADIOS2_USE_MPI + MPI_Init(&argc, &argv); +#endif + + { +#if ADIOS2_USE_MPI + adios2_adios *adios = adios2_init_mpi(MPI_COMM_WORLD); +#else + adios2_adios *adios = adios2_init(); +#endif + + const char greeting[] = "Hello World from ADIOS2"; + writer(adios, greeting); + + char *message = (char *)malloc(24); + reader(adios, message); + printf("%s\n", message); + + free(message); + } + +#if ADIOS2_USE_MPI + MPI_Finalize(); +#endif + + return 0; +} diff --git a/examples/hello/helloWorld/hello-world.cpp b/examples/hello/helloWorld/hello-world.cpp new file mode 100644 index 0000000000..9f30c14fa3 --- /dev/null +++ b/examples/hello/helloWorld/hello-world.cpp @@ -0,0 +1,76 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * hello-world.cpp : adios2 low-level API example to write and read a + * std::string Variable with a greeting + * + * Created on: Nov 14, 2019 + * Author: William F Godoy godoywf@ornl.gov + */ + +#include +#include + +#include +#if ADIOS2_USE_MPI +#include +#endif + +void writer(adios2::ADIOS &adios, const std::string &greeting) +{ + adios2::IO io = adios.DeclareIO("hello-world-writer"); + adios2::Variable varGreeting = io.DefineVariable("Greeting"); + + adios2::Engine writer = io.Open("hello-world-cpp.bp", adios2::Mode::Write); + writer.Put(varGreeting, greeting); + writer.Close(); +} + +std::string reader(adios2::ADIOS &adios) +{ + adios2::IO io = adios.DeclareIO("hello-world-reader"); + adios2::Engine reader = io.Open("hello-world-cpp.bp", adios2::Mode::Read); + reader.BeginStep(); + adios2::Variable varGreeting = io.InquireVariable("Greeting"); + std::string greeting; + reader.Get(varGreeting, greeting); + reader.EndStep(); + reader.Close(); + return greeting; +} + +int main(int argc, char *argv[]) +{ +#if ADIOS2_USE_MPI + MPI_Init(&argc, &argv); +#endif + + try + { +#if ADIOS2_USE_MPI + adios2::ADIOS adios(MPI_COMM_WORLD); +#else + adios2::ADIOS adios; +#endif + + const std::string greeting = "Hello World from ADIOS2"; + writer(adios, greeting); + + const std::string message = reader(adios); + std::cout << message << "\n"; + } + catch (std::exception &e) + { + std::cout << "ERROR: ADIOS2 exception: " << e.what() << "\n"; +#if ADIOS2_USE_MPI + MPI_Abort(MPI_COMM_WORLD, -1); +#endif + } + +#if ADIOS2_USE_MPI + MPI_Finalize(); +#endif + + return 0; +} diff --git a/examples/hello/helloWorld/hello-world.py b/examples/hello/helloWorld/hello-world.py new file mode 100644 index 0000000000..f73e5c4d31 --- /dev/null +++ b/examples/hello/helloWorld/hello-world.py @@ -0,0 +1,54 @@ +# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +# +# hello-world.py : adios2 low-level API example to write and read a +# string Variable with a greeting +# +# Created on: 2/2/2021 +# Author: Dmitry Ganyushin ganyushindi@ornl.gov +# +import sys +from mpi4py import MPI +import adios2 + +DATA_FILENAME = "hello-world-py.bp" +# MPI +comm = MPI.COMM_WORLD +rank = comm.Get_rank() +size = comm.Get_size() + + +def writer(ad, greeting): + """write a string to a bp file""" + io = ad.DeclareIO("hello-world-writer") + var_greeting = io.DefineVariable("Greeting") + w = io.Open(DATA_FILENAME, adios2.Mode.Write) + w.Put(var_greeting, greeting) + w.Close() + return 0 + + +def reader(ad): + """read a string from to a bp file""" + io = ad.DeclareIO("hello-world-reader") + r = io.Open(DATA_FILENAME, adios2.Mode.Read) + r.BeginStep() + var_greeting = io.InquireVariable("Greeting") + message = r.Get(var_greeting) + r.EndStep() + return message + + +def main(): + """driver function""" + ad = adios2.ADIOS(comm) + greeting = "Hello World from ADIOS2" + writer(ad, greeting) + message = reader(ad) + print("{}".format(message)) + return 0 + + +if __name__ == "__main__": + sys.exit(main()) diff --git a/examples/simulations/CMakeLists.txt b/examples/simulations/CMakeLists.txt index 93f7e8c70c..d6b6434beb 100644 --- a/examples/simulations/CMakeLists.txt +++ b/examples/simulations/CMakeLists.txt @@ -1,3 +1,13 @@ if(ADIOS2_HAVE_MPI) + add_subdirectory(gray-scott) + add_subdirectory(gray-scott-struct) + + if(ADIOS2_HAVE_Kokkos) + add_subdirectory(gray-scott-kokkos) + endif() + add_subdirectory(heatTransfer) endif() + +add_subdirectory(korteweg-de-vries) +add_subdirectory(lorenz_ode) diff --git a/examples/simulations/GrayScott.jl/.JuliaFormatter.toml b/examples/simulations/GrayScott.jl/.JuliaFormatter.toml new file mode 100644 index 0000000000..00db94693b --- /dev/null +++ b/examples/simulations/GrayScott.jl/.JuliaFormatter.toml @@ -0,0 +1,4 @@ +margin = 80 +join_lines_based_on_source = true +style = "sciml" +format_doctrings = true diff --git a/examples/simulations/GrayScott.jl/Project.toml b/examples/simulations/GrayScott.jl/Project.toml new file mode 100644 index 0000000000..a295ba3546 --- /dev/null +++ b/examples/simulations/GrayScott.jl/Project.toml @@ -0,0 +1,19 @@ +name = "GrayScott" +uuid = "089a57ea-382b-4fd7-9f05-24902db6ec52" +authors = ["William F Godoy "] +version = "0.1.0" + +[deps] +ADIOS2 = "e0ce9d3b-0dbd-416f-8264-ccca772f60ec" +AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" +ArgParse = "c7e460c6-2fb9-53a9-8c5b-16f535851c63" +CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" +Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" +JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" +MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" +MPIPreferences = "3da0fdf6-3ccc-4f1b-acd9-58baa6c99267" +PProf = "e4faabce-9ead-11e9-39d9-4379958e3056" +Profile = "9abbd945-dff8-562f-b5e8-e1ebf5ef1b79" + +[compat] +julia = "1.8" diff --git a/examples/simulations/GrayScott.jl/ReadMe.md b/examples/simulations/GrayScott.jl/ReadMe.md new file mode 100644 index 0000000000..fe4f08631d --- /dev/null +++ b/examples/simulations/GrayScott.jl/ReadMe.md @@ -0,0 +1,139 @@ +# ADIOS2 GrayScott.jl example + +Julia version of [the gray-scott C++ and Python](https://github.com/ornladios/ADIOS2/blob/master/examples/simulations/gray-scott/) +example. + +This is a 3D 7-point stencil code to simulate the following [Gray-Scott +reaction diffusion model](https://doi.org/10.1126/science.261.5118.189): + +``` +u_t = Du * (u_xx + u_yy + u_zz) - u * v^2 + F * (1 - u) + noise * randn(-1,1) +v_t = Dv * (v_xx + v_yy + v_zz) + u * v^2 - (F + k) * v +``` + +This version contains: + +- CPU threaded solver using Julia's [multithreading]](https://docs.julialang.org/en/v1/manual/multi-threading/) +- GPU solvers using [CUDA.jl](https://github.com/JuliaGPU/CUDA.jl), [AMDGPU.jl](https://github.com/JuliaGPU/AMDGPU.jl) +- Parallel I/O using the [ADIOS2.jl](https://github.com/eschnett/ADIOS2.jl) Julia bindings to [ADIOS2](https://github.com/ornladios/ADIOS2) +- Message passing interface (MPI) using [MPI.jl](https://github.com/JuliaParallel/MPI.jl) Julia bindings to MPI +- Easily switch between float- (Float32) and double- (Float64) precision in the configuration file + +## How to run + +Currently only the simulation part is ported from C++, the data analysis is work-in-progress. + +Pre-requisites: + +- A recent Julia version: v1.8.5 or v1.9.0-beta3 as of January 2023 from [julialang.org/downloads](https://julialang.org/downloads/) + +### Run locally + +1. **Set up dependencies** + +From the `GrayScott.jl` directory instantiate and use MPI artifact jll (preferred method). +To use a system provided MPI, see [here](https://juliaparallel.org/MPI.jl/latest/configuration/#using_system_mpi) + +```julia + +$ julia --project + +Julia REPL + +julia> ] + +(GrayScott.jl)> instantiate +... +(GrayScott.jl)> <- +julia> using MPIPreferences +julia> MPIPreferences.use_jll_binary() +julia> exit() +``` + +Julia manages its own packages using [Pkg.jl](https://pkgdocs.julialang.org/v1/), the above would create platform-specific `LocalPreferences.toml` and `Manifest.toml` files. + +2. **Set up the examples/settings-files.json configuration file** + +``` +{ + "L": 64, + "Du": 0.2, + "Dv": 0.1, + "F": 0.02, + "k": 0.048, + "dt": 1.0, + "plotgap": 10, + "steps": 10000, + "noise": 0.1, + "output": "gs-julia-1MPI-64L-F32.bp", + "checkpoint": false, + "checkpoint_freq": 700, + "checkpoint_output": "ckpt.bp", + "restart": false, + "restart_input": "ckpt.bp", + "adios_config": "adios2.xml", + "adios_span": false, + "adios_memory_selection": false, + "mesh_type": "image", + "precision": "Float32", + "backend": "CPU" +} + +``` + +The file is nearly identical to the C++ original example. +Not all options are currently supported, but two Julia-only options are added: + + - "precision": either Float32 or Float64 in the array simulation (including GPUs) + - "backend": "CPU", "CUDA" or "AMDGPU" + +3. **Running the simulation** + +- `CPU threads`: launch julia assigning a number of threads (e.g. -t 8): + + ``` + $ julia --project -t 8 gray-scott.jl examples/settings-files.json + ``` + +- `CUDA/AMDGPU`: set the "backend" option in examples/settings-files.json to either "CUDA" or "AMDGPU" + + ``` + $ julia --project gray-scott.jl examples/settings-files.json + ``` + +This would generate an adios2 file from the output entry in the configuration file (e.g. `gs-julia-1MPI-64L-F32.bp`) +that can be visualized with ParaView with either the VTX or the FIDES readers. +**Important**: the AMDGPU.jl implementation of `randn` is currently work in progress. +See related issue [here](https://github.com/JuliaGPU/AMDGPU.jl/issues/378) + + +4. **Running on OLCF Summit and Crusher systems** +The code was tested on the Oak Ridge National Laboratory Leadership Computing Facilities (OLCF): [Summit](https://docs.olcf.ornl.gov/systems/summit_user_guide.html) and [Crusher](https://docs.olcf.ornl.gov/systems/crusher_quick_start_guide.html). Both are used testing a recent version of Julia [v1.9.0-beta3](https://julialang.org/downloads/#upcoming_release) and a `JULIA_DEPOT_PATH` is required to install packages and artifacts. **DO NOT USE your home directory**. We are providing configuration scripts in `scripts/config_XXX.sh` showing the plumming required for these systems. They need to be executed only once per session from the login nodes. + +To reuse these file the first 3 entries must be modified and run on login-nodes and the PATH poiting at a downloaded Julia binary for the corresponding PowerPC (Summit) and x86-64 (Crusher) architectures. Only "CPU" and "CUDA" backends are supported on Summit, while "CPU" and "AMDGPU" backends are supported on Crusher. + + ``` + # Replace these 3 entries + PROJ_DIR=/gpfs/alpine/proj-shared/csc383 + export JULIA_DEPOT_PATH=$PROJ_DIR/etc/summit/julia_depot + GS_DIR=$PROJ_DIR/wgodoy/ADIOS2/examples/simulations/GrayScott.jl + ... + # and the path + export PATH=$PROJ_DIR/opt/summit/julia-1.9.0-beta3/bin:$PATH + ``` + +## To-do list + + 1. Add support including random number on device kernel code on `AMDGPU.jl` + 2. Set the domain size `L` in the configuration file as a multiple of 6 for Summit, and a multiple of 4 on Crusher + 3. Add data analysis: PDF for u and v and Julia 2D plotting capabilities: Plots.jl, Makie.jl + 4. Add interactive computing with Pluto.jl notebooks + + +## Acknowledgements +This research was supported by the Exascale Computing Project (17-SC-20-SC), a joint project of the U.S. Department of Energy’s Office of Science and National Nuclear Security Administration, responsible for delivering a capable exascale ecosystem, including software, applications, and hardware technology, to support the nation’s exascale computing imperative. + +This research used resources of the Oak Ridge Leadership Computing Facility at the Oak Ridge National Laboratory, which is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC05-00OR22725. + +Thanks to the Exascale Computing Project PROTEAS-TUNE and ADIOS subprojects, and the ASCR Bluestone. +Thanks to all the Julia community members, packages developers and maintainers for their great work. \ No newline at end of file diff --git a/examples/simulations/GrayScott.jl/examples/settings-files.json b/examples/simulations/GrayScott.jl/examples/settings-files.json new file mode 100644 index 0000000000..ab6b9cc9d4 --- /dev/null +++ b/examples/simulations/GrayScott.jl/examples/settings-files.json @@ -0,0 +1,23 @@ +{ + "L": 64, + "Du": 0.2, + "Dv": 0.1, + "F": 0.02, + "k": 0.048, + "dt": 1.0, + "plotgap": 10, + "steps": 10000, + "noise": 0.1, + "output": "gs-julia-1MPI-64L-F32.bp", + "checkpoint": false, + "checkpoint_freq": 700, + "checkpoint_output": "ckpt.bp", + "restart": false, + "restart_input": "ckpt.bp", + "adios_config": "adios2.xml", + "adios_span": false, + "adios_memory_selection": false, + "mesh_type": "image", + "precision": "Float32", + "backend": "CPU" +} \ No newline at end of file diff --git a/examples/simulations/GrayScott.jl/gray-scott.jl b/examples/simulations/GrayScott.jl/gray-scott.jl new file mode 100644 index 0000000000..2c1196beb9 --- /dev/null +++ b/examples/simulations/GrayScott.jl/gray-scott.jl @@ -0,0 +1,15 @@ +import GrayScott + +# using Profile +# using PProf + +function julia_main()::Cint + GrayScott.main(ARGS) + return 0 +end + +if !isdefined(Base, :active_repl) + @time julia_main() + # @profile julia_main() + # pprof() +end \ No newline at end of file diff --git a/examples/simulations/GrayScott.jl/scripts/config_crusher.sh b/examples/simulations/GrayScott.jl/scripts/config_crusher.sh new file mode 100644 index 0000000000..3820dd297b --- /dev/null +++ b/examples/simulations/GrayScott.jl/scripts/config_crusher.sh @@ -0,0 +1,43 @@ +#!/bin/bash + +PROJ_DIR=/gpfs/alpine/proj-shared/csc383 +export JULIA_DEPOT_PATH=$PROJ_DIR/etc/crusher/julia_depot +GS_DIR=$PROJ_DIR/wgodoy/ADIOS2/examples/simulations/GrayScott.jl + +# remove existing generated Manifest.toml +rm -f $GS_DIR/Manifest.toml +rm -f $GS_DIR/LocalPreferences.toml + +# good practice to avoid conflicts with existing default modules +module purge + +# load required modules +module load PrgEnv-cray/8.3.3 # has required gcc +module load cray-mpich +module load rocm/5.4.0 +module load adios2 # only works with PrgEnv-cray + +# existing julia 1.6 module is outdated +export PATH=$PROJ_DIR/opt/crusher/julia-1.9.0-beta3/bin:$PATH + +# Required to point at underlying modules above +export JULIA_AMDGPU_DISABLE_ARTIFACTS=1 +# Required to enable underlying ADIOS2 library from loaded module +export JULIA_ADIOS2_PATH=$OLCF_ADIOS2_ROOT + +# MPIPreferences to use spectrum-mpi +julia --project=$GS_DIR -e 'using Pkg; Pkg.add("MPIPreferences")' +julia --project=$GS_DIR -e 'using MPIPreferences; MPIPreferences.use_system_binary(; library_names=["libmpi_cray"], mpiexec="srun")' + +# Regression being fixed with CUDA v4.0.0. CUDA.jl does lazy loading for portability to systems without NVIDIA GPUs +julia --project=$GS_DIR -e 'using Pkg; Pkg.add(name="CUDA", version="v3.13.1")' + +# Instantiate the project by installing packages in Project.toml +julia --project=$GS_DIR -e 'using Pkg; Pkg.instantiate()' + +# Adds a custom branch in case the development version is needed (for devs to test new features) +julia --project=$GS_DIR -e 'using Pkg; Pkg.add(url="https://github.com/eschnett/ADIOS2.jl.git", rev="main")' + +# Build the new ADIOS2 +julia --project=$GS_DIR -e 'using Pkg; Pkg.build()' +julia --project=$GS_DIR -e 'using Pkg; Pkg.precompile()' diff --git a/examples/simulations/GrayScott.jl/scripts/config_summit.sh b/examples/simulations/GrayScott.jl/scripts/config_summit.sh new file mode 100644 index 0000000000..d5f616ee31 --- /dev/null +++ b/examples/simulations/GrayScott.jl/scripts/config_summit.sh @@ -0,0 +1,43 @@ +#!/bin/bash + +# Replace these 3 entries +PROJ_DIR=/gpfs/alpine/proj-shared/csc383 +export JULIA_DEPOT_PATH=$PROJ_DIR/etc/summit/julia_depot +GS_DIR=$PROJ_DIR/wgodoy/ADIOS2/examples/simulations/GrayScott.jl + +# remove existing generated Manifest.toml +rm -f $GS_DIR/Manifest.toml +rm -f $GS_DIR/LocalPreferences.toml + +# good practice to avoid conflicts with existing default modules +# needed to avoid seg fault with MPI +module purge + +# load required modules +module load spectrum-mpi +module load gcc/12.1.0 # needed by julia libraries +module load cuda/11.0.3 # failure with 11.5.2 +module load adios2/2.8.1 +# module load julia/1.8.2 not working with CUDA.jl as it's missing libLLVM-13jl.so +export PATH=$PROJ_DIR/opt/summit/julia-1.9.0-beta3/bin:$PATH + +# Required to enable underlying ADIOS2 library from loaded module +export JULIA_ADIOS2_PATH=$OLCF_ADIOS2_ROOT + +# MPIPreferences to use spectrum-mpi +julia --project=$GS_DIR -e 'using Pkg; Pkg.add("MPIPreferences")' +julia --project=$GS_DIR -e 'using MPIPreferences; MPIPreferences.use_system_binary(; library_names=["libmpi_ibm"], mpiexec="jsrun")' + +# Instantiate the project by installing packages in Project.toml +julia --project=$GS_DIR -e 'using Pkg; Pkg.instantiate()' + +# Adds to LocalPreferences.toml to use underlying system CUDA since CUDA.jl v4.0.0 +# https://cuda.juliagpu.org/stable/installation/overview/#Using-a-local-CUDA +julia --project=$GS_DIR -e 'using CUDA; CUDA.set_runtime_version!("local")' + +# Adds a custom branch in case the development version is needed (for devs to test new features) +julia --project=$GS_DIR -e 'using Pkg; Pkg.add(url="https://github.com/eschnett/ADIOS2.jl.git", rev="main")' + +# Build the new ADIOS2 +julia --project=$GS_DIR -e 'using Pkg; Pkg.build()' +julia --project=$GS_DIR -e 'using Pkg; Pkg.precompile()' diff --git a/examples/simulations/GrayScott.jl/scripts/job_crusher.sh b/examples/simulations/GrayScott.jl/scripts/job_crusher.sh new file mode 100644 index 0000000000..ee4953f6d1 --- /dev/null +++ b/examples/simulations/GrayScott.jl/scripts/job_crusher.sh @@ -0,0 +1,17 @@ +#!/bin/bash +#SBATCH -A CSC383_crusher +#SBATCH -J gs-julia-1MPI-1GPU +#SBATCH -o %x-%j.out +#SBATCH -e %x-%j.err +#SBATCH -t 0:02:00 +#SBATCH -p batch +#SBATCH -N 1 + +date + +GS_DIR=/gpfs/alpine/proj-shared/csc383/wgodoy/ADIOS2/examples/simulations/GrayScott.jl +GS_EXE=$GS_DIR/gray-scott.jl + +srun -n 1 --gpus=1 julia --project=$GS_DIR $GS_EXE settings-files.json + +# launch this file with sbatch `$ sbatch job_crusher.sh` diff --git a/examples/simulations/GrayScott.jl/scripts/job_summit.sh b/examples/simulations/GrayScott.jl/scripts/job_summit.sh new file mode 100644 index 0000000000..9beffc157f --- /dev/null +++ b/examples/simulations/GrayScott.jl/scripts/job_summit.sh @@ -0,0 +1,18 @@ +#!/bin/bash +# Begin LSF directives +#BSUB -P csc383 +#BSUB -W 00:02 +#BSUB -nnodes 1 +#BSUB -J gs-julia +#BSUB -o output.%J +#BSUB -e output.%J +#BSUB -N godoywf@ornl.gov +# End BSUB directives and begin shell commands + +date +GS_DIR=/gpfs/alpine/proj-shared/csc383/wgodoy/ADIOS2/examples/simulations/GrayScott.jl +GS_EXE=$GS_DIR/gray-scott.jl + +jsrun -n 1 -g 1 julia --project=$GS_DIR $GS_EXE settings-files.json + +# launch this file with bsub `$ bsub job_summit.sh` diff --git a/examples/simulations/GrayScott.jl/src/GrayScott.jl b/examples/simulations/GrayScott.jl/src/GrayScott.jl new file mode 100644 index 0000000000..d50c1abb09 --- /dev/null +++ b/examples/simulations/GrayScott.jl/src/GrayScott.jl @@ -0,0 +1,91 @@ +""" +GrayScott.jl is a Simulation and Analysis parallel framework for solving the +Gray-Scott 3D diffusion reaction system of equations of two variables U and V on +a regular Cartesian mesh. + +The bp output files can be visualized with ParaView. +""" +module GrayScott + +import MPI, ADIOS2 + +# contains relevant data containers "structs" for Input, Domain and Fields +include(joinpath("simulation", "Structs.jl")) + +# contains helper functions for general use +include(joinpath("helper", "Helper.jl")) +import .Helper + +# initializes inputs from configuration file +include(joinpath("simulation", "Inputs.jl")) +import .Inputs + +# manages the simulation computation +include(joinpath("simulation", "Simulation.jl")) +import .Simulation + +# manages the I/O +include(joinpath("simulation", "IO.jl")) +import .IO + +function julia_main()::Cint + try + main(ARGS) + catch + Base.invokelatest(Base.display_error, Base.catch_stack()) + return 1 + end + return 0 +end + +function main(args::Vector{String})::Int32 + MPI.Init() + comm = MPI.COMM_WORLD + rank = MPI.Comm_rank(comm) + size = MPI.Comm_size(comm) + + # a data struct that holds settings data from config_file in args + # example config file: ../examples/settings-files.json + settings = Inputs.get_settings(args, comm) + + # initialize MPI Cartesian Domain and Communicator + mpi_cart_domain = Simulation.init_domain(settings, comm) + + # initialize fields + fields = Simulation.init_fields(settings, + mpi_cart_domain, + Helper.get_type(settings.precision)) + + # initialize IOStream struct holding ADIOS-2 components for parallel I/O + stream = IO.init(settings, mpi_cart_domain, fields) + + restart_step::Int32 = 0 + # @TODO: checkpoint-restart + step::Int32 = restart_step + + while step < settings.steps + Simulation.iterate!(fields, settings, mpi_cart_domain) + step += 1 + + if step % settings.plotgap == 0 + if rank == 0 + println("Simulation at step ", step, " writing output step ", + step / settings.plotgap) + end + + IO.write_step!(stream, step, fields) + end + end + + IO.close!(stream) + + # Debugging session or Julia REPL session, not needed overall as it would be + # called when the program ends + if !isinteractive() + MPI.Finalize() + end + + return 0 +end + +end # module GrayScott diff --git a/examples/simulations/GrayScott.jl/src/analysis/pdfcalc.jl b/examples/simulations/GrayScott.jl/src/analysis/pdfcalc.jl new file mode 100644 index 0000000000..f7fb0bb33f --- /dev/null +++ b/examples/simulations/GrayScott.jl/src/analysis/pdfcalc.jl @@ -0,0 +1,160 @@ + +import MPI +import ArgParse +import ADIOS2 + +function _epsilon(d::T)::Bool where {T <: Number} + return (d < 1.0e-20) +end + +""" +Return 2 arrays pdf and bins of a 2D slice +""" +function _compute_pdf(data::Array{T, 3}, shape, count, nbins, min::T, + max::T) where {T} + pdf = Array{T, 2}(undef, nbins, count) + bins = Array{T, 1}(undef, nbins) + bin_width = (max - min) / nbins + + for i in 1:nbins + bins[i] = min + (i - 1) * bin_width + end + + slice_size = shape[2] * shape[3] + # special case: only one bin or small window + if nbins == 1 || _epsilon(max - min) || _epsilon(bin_width) + fill!(pdf, slice_size) + return pdf, bins + end + + # Calculate a PDF for 'nbins' bins for values between 'min' and 'max' + + for c in 1:count + for j in 1:shape[2] + for k in 1:shape[3] + value = data[k, j, c] + + if value > max || value < min + @show value, " is outside [", min, max "]" + end + bin = floor((value - min) / bin_width) + + if bin == nbins + bin = nbins - 1 + end + pdf[bin, c] += 1 + end + end + end +end + +function _parse_arguments(args) + s = ArgParse.ArgParseSettings(description = "gray-scott workflow pdf generator, Julia version") + + # @add_arg_table! s begin + # "--opt1" # an option (will take an argument) + # "--opt2", "-o" # another option, with short form + # "arg1" # a positional argument + # end + + ArgParse.@add_arg_table! s begin + "input" + help = "Name of the input file handle for reading data" + arg_type = String + required = true + "output" + help = "Name of the output file to which data must be written" + arg_type = String + required = true + "N" + help = "Number of bins for the PDF calculation, default = 1000" + arg_type = Int64 + required = false + default = 1000 + "output_inputdata" + help = "YES will write the original variables besides the analysis results" + arg_type = Bool + required = false + default = false + end + + # parse_args return a dictionary with key/value for arguments + parsed_arguments = ArgParse.parse_args(args, s) + return parsed_arguments +end + +function _read_data_write_pdf(inputs, comm) + in_filename = inputs["input"] + out_filename = inputs["output"] + nbins = inputs["N"] + write_inputvars = inputs["output_inputdata"] + + adios = ADIOS2.adios_init_mpi("adios2.xml", comm) + + reader_io = ADIOS2.declare_io(adios, "SimulationOutput") + writer_io = ADIOS2.declare_io(adios, "PDFAnalysisOutput") + + rank = MPI.Comm_rank(comm) + size = MPI.Comm_size(comm) + + if rank == 0 + println("PDF analysis reads from Simulation using engine type: ", + ADIOS2.engine_type(reader_io)) + println("PDF analysis writes using engine type: ", + ADIOS2.engine_type(writer_io)) + end + + # Engines for reading and writing + reader = ADIOS2.open(reader_io, inputs["input"], ADIOS2.mode_read) + writer = ADIOS2.open(writer_io, inputs["output"], ADIOS2.mode_write) + + # break inside if needed + while true + + # timeout is 10 seconds + read_status = ADIOS2.begin_step(reader, ADIOS2.step_mode_read, 10) + + if read_status == ADIOS2.step_status_not_ready + # sleep in seconds, minimum is one milisecond = 0.001 + sleep(1) + continue + else if read_status != ADIOS2.step_status_ok + break + end + + step_sim_out = ADIOS2.current_step(reader) + var_U = ADIOS2.inquire_variable(reader_io, "U") + var_V = ADIOS2.inquire_variable(reader_io, "V") + var_step = ADIOS2.inquire_variable(reader_io, "step") + + shape = ADIOS2.shape(var_U) + + # Split in the slowest dimension + count_z = shape[3] / size + start_z = count_z * rank + + # Last process needs to read all the rest + if rank == size-1 + count_z = shape[3] - count_z * (size-1) + end + + # missing set_selection + start = ( 0,0,start_z) + count = (shape[1], shape[2], count_z) + ADIOS2.set_selection(var_U, start, count) + ADIOS2.set_selection(var_V, start, count) + + # Calculate + + end +end + +function main(args) + MPI.Init() + + inputs = _parse_arguments(args) + comm = MPI.COMM_WORLD + _read_data_write_pdf(inputs, comm) + + MPI.Finalize() +end diff --git a/examples/simulations/GrayScott.jl/src/helper/Helper.jl b/examples/simulations/GrayScott.jl/src/helper/Helper.jl new file mode 100644 index 0000000000..757c571714 --- /dev/null +++ b/examples/simulations/GrayScott.jl/src/helper/Helper.jl @@ -0,0 +1,7 @@ + +module Helper + +include("helperMPI.jl") +include("helperString.jl") + +end \ No newline at end of file diff --git a/examples/simulations/GrayScott.jl/src/helper/helperMPI.jl b/examples/simulations/GrayScott.jl/src/helper/helperMPI.jl new file mode 100644 index 0000000000..529d7e0420 --- /dev/null +++ b/examples/simulations/GrayScott.jl/src/helper/helperMPI.jl @@ -0,0 +1,15 @@ + +import MPI + +export bcase_file + +function bcast_file_contents(file_name::String, comm, root = 0)::String + size::UInt32 = 0 + data::Vector{UInt8} = [] + if MPI.Comm_rank(comm) == root + data = read(open(file_name, "r")) + end + + data = MPI.bcast(data, comm) + return String(data) +end diff --git a/examples/simulations/GrayScott.jl/src/helper/helperString.jl b/examples/simulations/GrayScott.jl/src/helper/helperString.jl new file mode 100644 index 0000000000..596a2f0b94 --- /dev/null +++ b/examples/simulations/GrayScott.jl/src/helper/helperString.jl @@ -0,0 +1,14 @@ + +export get_type + +function get_type(input::String) + if input == "Float64" + return Float64 + elseif input == "Float32" + return Float32 + elseif input == "Float16" + return Float16 + end + + return nothing +end \ No newline at end of file diff --git a/examples/simulations/GrayScott.jl/src/simulation/IO.jl b/examples/simulations/GrayScott.jl/src/simulation/IO.jl new file mode 100644 index 0000000000..deb3a24ae8 --- /dev/null +++ b/examples/simulations/GrayScott.jl/src/simulation/IO.jl @@ -0,0 +1,106 @@ +module IO + +export init, write_step! + +# import external module +import ADIOS2 + +# internal submodule +import ..Simulation +# types from parent module types in Structs.jl +import ..Settings, ..MPICartDomain, ..Fields, ..IOStream + +function init(settings::Settings, mcd::MPICartDomain, + fields::Fields{T}) where {T} + + # initialize adios MPI using the cartesian communicator + adios = ADIOS2.adios_init_mpi(mcd.cart_comm) + io = ADIOS2.declare_io(adios, "SimulationOutput") + # @TODO: implement ADIOS2.set_engine in ADIOS2.jl + engine = ADIOS2.open(io, settings.output, ADIOS2.mode_write) + + # store simulation run provenance as attributes + ADIOS2.define_attribute(io, "F", settings.F) + ADIOS2.define_attribute(io, "k", settings.k) + ADIOS2.define_attribute(io, "dt", settings.dt) + ADIOS2.define_attribute(io, "Du", settings.Du) + ADIOS2.define_attribute(io, "Dv", settings.Dv) + ADIOS2.define_attribute(io, "noise", settings.noise) + + _add_visualization_schemas(io, settings.L) + + # ADIOS2 requires tuples for the dimensions + # define global variables u and v + shape = (settings.L, settings.L, settings.L) + start = Tuple(mcd.proc_offsets) + count = Tuple(mcd.proc_sizes) + + var_step = ADIOS2.define_variable(io, "step", Int32) + var_U = ADIOS2.define_variable(io, "U", T, shape, start, count) + var_V = ADIOS2.define_variable(io, "V", T, shape, start, count) + + return IOStream(adios, io, engine, var_step, var_U, var_V) +end + +function write_step!(stream::IOStream, step::Int32, fields::Fields{T}) where {T} + + # this creates temporaries similar to Fortran + u_no_ghost, v_no_ghost = Simulation.get_fields(fields) + + # writer engine + w = stream.engine + + ADIOS2.begin_step(w) + ADIOS2.put!(w, stream.var_step, step) + ADIOS2.put!(w, stream.var_U, u_no_ghost) + ADIOS2.put!(w, stream.var_V, v_no_ghost) + ADIOS2.end_step(w) +end + +function close!(stream::IOStream) + ADIOS2.close(stream.engine) + ADIOS2.adios_finalize(stream.adios) +end + +function _add_visualization_schemas(io, length) + + # Fides schema + ADIOS2.define_attribute(io, "Fides_Data_Model", "uniform") + ADIOS2.define_attribute_array(io, "Fides_Origin", [0.0, 0.0, 0.0]) + ADIOS2.define_attribute_array(io, "Fides_Spacing", [0.1, 0.1, 0.1]) + ADIOS2.define_attribute(io, "Fides_Dimension_Variable", "U") + ADIOS2.define_attribute_array(io, "Fides_Variable_List", ["U", "V"]) + ADIOS2.define_attribute_array(io, "Fides_Variable_Associations", + ["points", "points"]) + + # VTX schema + # string concatenation uses *, ^ is for repetition + # if length = 64 + # extent = "0 64 0 64 0 64 " + extent = ("0 " * string(length) * " ")^3 + extent = rstrip(extent) + + # deactive code formatting using JuliaFormatter.jl + # raw strings: " must be escaped with \" + #! format: off + vtx_schema = raw" + + + + + + + + + step + + + + + " + #! format: on + # reactive code formatting using JuliaFormatter.jl + ADIOS2.define_attribute(io, "vtk.xml", vtx_schema) +end + +end diff --git a/examples/simulations/GrayScott.jl/src/simulation/Inputs.jl b/examples/simulations/GrayScott.jl/src/simulation/Inputs.jl new file mode 100644 index 0000000000..a4160ce1d8 --- /dev/null +++ b/examples/simulations/GrayScott.jl/src/simulation/Inputs.jl @@ -0,0 +1,78 @@ + +""" +Submodule used by GrayScott to handle inputs +""" +module Inputs + +export get_settings + +import ArgParse +import JSON + +import ..Helper +# import directly from parent module (GrayScott) +import ..Settings, ..SettingsKeys + +# public facing function +function get_settings(args::Vector{String}, comm)::Settings + config_file = _parse_args(args) + + # check format extension + if !endswith(config_file, ".json") && + !(endswith(config_file, ".yaml") || endswith(config_file, ".yml")) + throw(ArgumentError("config file must be json, yaml format. Extension not recognized.\n")) + end + + config_file_contents::String = Helper.bcast_file_contents(config_file, comm) + + if endswith(config_file, ".json") + return _parse_settings_json(config_file_contents) + end + + return nothing +end + +# local scope functions +function _parse_args(args::Vector{String}; + error_handler = ArgParse.default_handler)::String + s = ArgParse.ArgParseSettings(description = "gray-scott workflow simulation example configuration file, Julia version, GrayScott.jl", + exc_handler = error_handler) + + # @add_arg_table! s begin + # "--opt1" # an option (will take an argument) + # "--opt2", "-o" # another option, with short form + # "arg1" # a positional argument + # end + + ArgParse.@add_arg_table! s begin + "config_file" + help = "configuration file" + arg_type = String + required = true + end + + # parse_args return a dictionary with key/value for arguments + parsed_arguments = ArgParse.parse_args(args, s) + + # key is mandatory, so it's safe to retrieve + config_file::String = parsed_arguments["config_file"] + + return config_file +end + +function _parse_settings_json(json_contents::String)::Settings + json = JSON.parse(json_contents) + settings = Settings() + + # Iterate through dictionary pairs + for (key, value) in json + # Iterate through predefined keys, else ignore (no error if unrecognized) + if key in SettingsKeys + setproperty!(settings, Symbol(key), value) + end + end + + return settings +end + +end # module \ No newline at end of file diff --git a/examples/simulations/GrayScott.jl/src/simulation/Simulation.jl b/examples/simulations/GrayScott.jl/src/simulation/Simulation.jl new file mode 100644 index 0000000000..f3cbf3325c --- /dev/null +++ b/examples/simulations/GrayScott.jl/src/simulation/Simulation.jl @@ -0,0 +1,281 @@ +""" +The present file contains runtime backend for using CPU Threads, and optionally +CUDA.jl and AMDGPU.jl +""" +module Simulation + +export init_domain, init_fields + +import MPI +import Distributions + +# from parent module +import ..Settings, ..MPICartDomain, ..Fields + +# include functions for NVIDIA GPUs using CUDA.jl +include("Simulation_CUDA.jl") +# include functions for AMD GPUs using AMDGPU.jl +include("Simulation_AMDGPU.jl") + +function init_domain(settings::Settings, comm::MPI.Comm)::MPICartDomain + mcd = MPICartDomain() + + # set dims and Cartesian communicator + mcd.dims = MPI.Dims_create(MPI.Comm_size(comm), mcd.dims) + mcd.cart_comm = MPI.Cart_create(comm, mcd.dims) + + # set proc local coordinates in Cartesian communicator + rank = MPI.Comm_rank(comm) + mcd.coords = MPI.Cart_coords(mcd.cart_comm, rank) + + # set proc local mesh sizes + mcd.proc_sizes = settings.L ./ mcd.dims + + for (i, coord) in enumerate(mcd.coords) + if coord < settings.L % mcd.dims[i] + mcd.proc_sizes[i] += 1 + end + end + + # set proc local offsets + for i in 1:3 + mcd.proc_offsets[i] = settings.L / mcd.dims[i] * + mcd.coords[i] + +min(settings.L % mcd.dims[i], mcd.coords[i]) + end + + # get neighbors ranks + mcd.proc_neighbors["west"], + mcd.proc_neighbors["east"] = MPI.Cart_shift(mcd.cart_comm, 0, 1) + mcd.proc_neighbors["down"], + mcd.proc_neighbors["up"] = MPI.Cart_shift(mcd.cart_comm, 1, 1) + mcd.proc_neighbors["south"], + mcd.proc_neighbors["north"] = MPI.Cart_shift(mcd.cart_comm, 2, 1) + + return mcd +end + +""" +Create and Initialize fields for either CPU, CUDA.jl, AMDGPU.jl backends +Multiple dispatch would direct to the appropriate overleaded function +""" +function init_fields(settings::Settings, + mcd::MPICartDomain, T)::Fields{T} + lowercase_backend = lowercase(settings.backend) + if lowercase_backend == "cuda" + return _init_fields_cuda(settings, mcd, T) + elseif lowercase_backend == "amdgpu" + return _init_fields_amdgpu(settings, mcd, T) + end + # everything else would trigger the CPU threads backend + return _init_fields_cpu(settings, mcd, T) +end + +function _init_fields_cpu(settings::Settings, + mcd::MPICartDomain, T)::Fields{T} + size_x = mcd.proc_sizes[1] + size_y = mcd.proc_sizes[2] + size_z = mcd.proc_sizes[3] + + # should be ones + u = ones(T, size_x + 2, size_y + 2, size_z + 2) + v = zeros(T, size_x + 2, size_y + 2, size_z + 2) + + u_temp = zeros(T, size_x + 2, size_y + 2, size_z + 2) + v_temp = zeros(T, size_x + 2, size_y + 2, size_z + 2) + + function is_inside(x, y, z, offsets, sizes)::Bool + if x < offsets[1] || x >= offsets[1] + sizes[1] + return false + end + if y < offsets[2] || y >= offsets[2] + sizes[2] + return false + end + if z < offsets[3] || z >= offsets[3] + sizes[3] + return false + end + + return true + end + + d::Int64 = 6 + + # global locations + minL = Int64(settings.L / 2 - d) + maxL = Int64(settings.L / 2 + d) + + xoff = mcd.proc_offsets[1] + yoff = mcd.proc_offsets[2] + zoff = mcd.proc_offsets[3] + + Threads.@threads for z in minL:maxL + for y in minL:maxL + for x in minL:maxL + if !is_inside(x, y, z, mcd.proc_offsets, mcd.proc_sizes) + continue + end + + # Julia is 1-index, like Fortran :) + u[x - xoff + 2, y - yoff + 2, z - zoff + 2] = 0.25 + v[x - xoff + 2, y - yoff + 2, z - zoff + 2] = 0.33 + end + end + end + + xy_face_t, xz_face_t, yz_face_t = _get_mpi_faces(size_x, size_y, size_z, T) + + fields = Fields(u, v, u_temp, v_temp, xy_face_t, xz_face_t, yz_face_t) + return fields +end + +function iterate!(fields::Fields{T, N, Array{T, N}}, settings::Settings, + mcd::MPICartDomain) where {T, N} + _exchange!(fields, mcd) + # this function is the bottleneck + _calculate!(fields, settings, mcd) + + # swap the names + fields.u, fields.u_temp = fields.u_temp, fields.u + fields.v, fields.v_temp = fields.v_temp, fields.v +end + +function _get_mpi_faces(size_x, size_y, size_z, T) + + ## create a new type taking: count, block length, stride + ## to interoperate with MPI for ghost cell exchange + xy_face_t = MPI.Types.create_vector(size_y + 2, size_x, size_x + 2, + MPI.Datatype(T)) + xz_face_t = MPI.Types.create_vector(size_z, size_x, + (size_x + 2) * (size_y + 2), + MPI.Datatype(T)) + yz_face_t = MPI.Types.create_vector((size_y + 2) * (size_z + 2), 1, + size_x + 2, MPI.Datatype(T)) + MPI.Types.commit!(xy_face_t) + MPI.Types.commit!(xz_face_t) + MPI.Types.commit!(yz_face_t) + + return xy_face_t, xz_face_t, yz_face_t +end + +function _exchange!(fields, mcd) + """ + Send XY face z=size_z+1 to north and receive z=1 from south + """ + function _exchange_xy!(var, size_z, data_type, rank1, rank2, comm) + # to north + send_buf = MPI.Buffer(@view(var[2, 1, size_z + 1]), 1, data_type) + recv_buf = MPI.Buffer(@view(var[2, 1, 1]), 1, data_type) + MPI.Sendrecv!(send_buf, recv_buf, comm, dest = rank1, source = rank2) + + # to south + send_buf = MPI.Buffer(@view(var[2, 1, 2]), 1, data_type) + recv_buf = MPI.Buffer(@view(var[2, 1, size_z + 2]), 1, data_type) + MPI.Sendrecv!(send_buf, recv_buf, comm, dest = rank2, source = rank1) + end + + """ + Send XZ face y=size_y+1 to up and receive y=1 from down + """ + function _exchange_xz!(var, size_y, data_type, rank1, rank2, comm) + # to up + send_buf = MPI.Buffer(@view(var[2, size_y + 1, 2]), 1, data_type) + recv_buf = MPI.Buffer(@view(var[2, 1, 2]), 1, data_type) + MPI.Sendrecv!(send_buf, recv_buf, comm, dest = rank1, source = rank2) + + # to down + send_buf = MPI.Buffer(@view(var[2, 2, 2]), 1, data_type) + recv_buf = MPI.Buffer(@view(var[2, size_y + 2, 2]), 1, data_type) + MPI.Sendrecv!(send_buf, recv_buf, comm, dest = rank2, source = rank1) + end + + """ + Send YZ face x=size_x+2 to east and receive x=2 from west + """ + function _exchange_yz!(var, size_x, data_type, rank1, rank2, comm) + # to east + send_buf = MPI.Buffer(@view(var[size_x + 1, 1, 1]), 1, data_type) + recv_buf = MPI.Buffer(@view(var[1, 1, 1]), 1, data_type) + MPI.Sendrecv!(send_buf, recv_buf, comm, dest = rank1, source = rank2) + + # to west + send_buf = MPI.Buffer(@view(var[2, 1, 1]), 1, data_type) + recv_buf = MPI.Buffer(@view(var[size_x + 2, 1, 1]), 1, data_type) + MPI.Sendrecv!(send_buf, recv_buf, comm, dest = rank2, source = rank1) + end + + # if already a CPU array, no need to copy, + # otherwise (device) copy to host. + u = typeof(fields.u) <: Array ? fields.u : Array(fields.u) + v = typeof(fields.v) <: Array ? fields.v : Array(fields.v) + + for var in [u, v] + _exchange_xy!(var, mcd.proc_sizes[3], fields.xy_face_t, + mcd.proc_neighbors["north"], mcd.proc_neighbors["south"], + mcd.cart_comm) + + _exchange_xz!(var, mcd.proc_sizes[2], fields.xz_face_t, + mcd.proc_neighbors["up"], mcd.proc_neighbors["down"], + mcd.cart_comm) + + _exchange_yz!(var, mcd.proc_sizes[1], fields.yz_face_t, + mcd.proc_neighbors["east"], mcd.proc_neighbors["west"], + mcd.cart_comm) + end +end + +function _calculate!(fields::Fields{T, N, Array{T, N}}, settings::Settings, + mcd::MPICartDomain) where {T, N} + Du = convert(T, settings.Du) + Dv = convert(T, settings.Dv) + F = convert(T, settings.F) + K = convert(T, settings.k) + noise = convert(T, settings.noise) + dt = convert(T, settings.dt) + + # loop through non-ghost cells, bounds are inclusive + # @TODO: load balancing? option: a big linear loop + # use @inbounds at the right for-loop level, avoid putting it at the top level + Threads.@threads for k in 2:(mcd.proc_sizes[3] + 1) + for j in 2:(mcd.proc_sizes[2] + 1) + @inbounds for i in 2:(mcd.proc_sizes[1] + 1) + u = fields.u[i, j, k] + v = fields.v[i, j, k] + + # introduce a random disturbance on du + du = Du * _laplacian(i, j, k, fields.u) - u * v^2 + + F * (1.0 - u) + + noise * rand(Distributions.Uniform(-1, 1)) + + dv = Dv * _laplacian(i, j, k, fields.v) + u * v^2 - + (F + K) * v + + # advance the next step + fields.u_temp[i, j, k] = u + du * dt + fields.v_temp[i, j, k] = v + dv * dt + end + end + end +end + +""" + 7-point stencil around the cell, + this is equally a host and a device function! +""" +function _laplacian(i, j, k, var) + @inbounds l = var[i - 1, j, k] + var[i + 1, j, k] + var[i, j - 1, k] + + var[i, j + 1, k] + var[i, j, k - 1] + var[i, j, k + 1] - + 6.0 * var[i, j, k] + return l / 6.0 +end + +function get_fields(fields::Fields{T, N, Array{T, N}}) where {T, N} + @inbounds begin + u_no_ghost = fields.u[(begin + 1):(end - 1), (begin + 1):(end - 1), + (begin + 1):(end - 1)] + v_no_ghost = fields.v[(begin + 1):(end - 1), (begin + 1):(end - 1), + (begin + 1):(end - 1)] + end + return u_no_ghost, v_no_ghost +end + +end # module diff --git a/examples/simulations/GrayScott.jl/src/simulation/Simulation_AMDGPU.jl b/examples/simulations/GrayScott.jl/src/simulation/Simulation_AMDGPU.jl new file mode 100644 index 0000000000..8920167779 --- /dev/null +++ b/examples/simulations/GrayScott.jl/src/simulation/Simulation_AMDGPU.jl @@ -0,0 +1,168 @@ + +import AMDGPU + +function _init_fields_amdgpu(settings::Settings, mcd::MPICartDomain, + T)::Fields{T, 3, <:AMDGPU.ROCArray{T, 3}} + size_x = mcd.proc_sizes[1] + size_y = mcd.proc_sizes[2] + size_z = mcd.proc_sizes[3] + + # should be ones + u = AMDGPU.ones(T, size_x + 2, size_y + 2, size_z + 2) + v = AMDGPU.zeros(T, size_x + 2, size_y + 2, size_z + 2) + + u_temp = AMDGPU.zeros(T, size_x + 2, size_y + 2, size_z + 2) + v_temp = AMDGPU.zeros(T, size_x + 2, size_y + 2, size_z + 2) + + roc_offsets = AMDGPU.ROCArray(mcd.proc_offsets) + roc_sizes = AMDGPU.ROCArray(mcd.proc_sizes) + + d::Int64 = 6 + minL = Int64(settings.L / 2 - d) + maxL = Int64(settings.L / 2 + d) + + # @TODO: get ideal grid size and threads + threads = (16, 16) + # grid size must be the total number of threads of each direction + grid = (settings.L, settings.L) + + AMDGPU.wait(AMDGPU.@roc groupsize=threads gridsize=grid _populate_amdgpu!(u, + v, + roc_offsets, + roc_sizes, + minL, + maxL)) + + xy_face_t, xz_face_t, yz_face_t = _get_mpi_faces(size_x, size_y, size_z, T) + + fields = Fields(u, v, u_temp, v_temp, xy_face_t, xz_face_t, yz_face_t) + return fields +end + +function iterate!(fields::Fields{T, N, <:AMDGPU.ROCArray{T, N}}, + settings::Settings, + mcd::MPICartDomain) where {T, N} + _exchange!(fields, mcd) + # this function is the bottleneck + _calculate!(fields, settings, mcd) + + # swap the names + fields.u, fields.u_temp = fields.u_temp, fields.u + fields.v, fields.v_temp = fields.v_temp, fields.v +end + +function _populate_amdgpu!(u, v, offsets, sizes, minL, maxL) + function is_inside(x, y, z, offsets, sizes)::Bool + if x < offsets[1] || x >= offsets[1] + sizes[1] + return false + end + if y < offsets[2] || y >= offsets[2] + sizes[2] + return false + end + if z < offsets[3] || z >= offsets[3] + sizes[3] + return false + end + + return true + end + + # local coordinates (this are 1-index already) + lz = (AMDGPU.workgroupIdx().x - Int32(1)) * AMDGPU.workgroupDim().x + + AMDGPU.workitemIdx().x + ly = (AMDGPU.workgroupIdx().y - Int32(1)) * AMDGPU.workgroupDim().y + + AMDGPU.workitemIdx().y + + # This check might not be needed + if lz <= size(u, 3) && ly <= size(u, 2) + + # get global coordinates + z = lz + offsets[3] - 1 + y = ly + offsets[2] - 1 + + if z >= minL && z <= maxL && y >= minL && y <= maxL + xoff = offsets[1] + + for x in minL:maxL + # check if global coordinates for initialization are inside the region + if !is_inside(x, y, z, offsets, sizes) + continue + end + + # Julia is 1-index, like Fortran :) + u[x - xoff + 2, ly + 1, lz + 1] = 0.25 + v[x - xoff + 2, ly + 1, lz + 1] = 0.33 + end + end + end +end + +function _calculate!(fields::Fields{T, N, <:AMDGPU.ROCArray{T, N}}, + settings::Settings, + mcd::MPICartDomain) where {T, N} + Du = convert(T, settings.Du) + Dv = convert(T, settings.Dv) + F = convert(T, settings.F) + K = convert(T, settings.k) + noise = convert(T, settings.noise) + dt = convert(T, settings.dt) + + roc_sizes = AMDGPU.ROCArray(mcd.proc_sizes) + + threads = (16, 16) + blocks = (settings.L, settings.L) + + AMDGPU.wait(AMDGPU.@roc groupsize=threads gridsize=grid _calculate_kernel_amdgpu!(fields.u, + fields.v, + fields.u_temp, + fields.v_temp, + roc_sizes, + Du, + Dv, + F, + K, + noise, + dt)) +end + +function _calculate_kernel_amdgpu!(u, v, u_temp, v_temp, sizes, Du, Dv, F, K, + noise, dt) + + # local coordinates (this are 1-index already) + k = (AMDGPU.workgroupIdx().x - Int32(1)) * AMDGPU.workgroupDim().x + + AMDGPU.workitemIdx().x + j = (AMDGPU.workgroupIdx().y - Int32(1)) * AMDGPU.workgroupDim().y + + AMDGPU.workitemIdx().y + + # loop through non-ghost cells + if k >= 2 && k <= sizes[3] + 1 && j >= 2 && j <= sizes[2] + 1 + # bounds are inclusive + for i in 2:(sizes[1] + 1) + u_ijk = u[i, j, k] + v_ijk = v[i, j, k] + + du = Du * _laplacian(i, j, k, u) - u_ijk * v_ijk^2 + + F * (1.0 - u_ijk) + # + noise * AMDGPU.rand(eltype(u)) + # WIP in AMDGPU.jl, works with CUDA.jl + # + rand(Distributions.Uniform(-1, 1)) + + dv = Dv * _laplacian(i, j, k, v) + u_ijk * v_ijk^2 - + (F + K) * v_ijk + + # advance the next step + u_temp[i, j, k] = u_ijk + du * dt + v_temp[i, j, k] = v_ijk + dv * dt + end + end +end + +function get_fields(fields::Fields{T, N, <:AMDGPU.ROCArray{T, N}}) where {T, N} + u = Array(fields.u) + u_no_ghost = u[(begin + 1):(end - 1), (begin + 1):(end - 1), + (begin + 1):(end - 1)] + + v = Array(fields.v) + v_no_ghost = v[(begin + 1):(end - 1), (begin + 1):(end - 1), + (begin + 1):(end - 1)] + return u_no_ghost, v_no_ghost +end diff --git a/examples/simulations/GrayScott.jl/src/simulation/Simulation_CUDA.jl b/examples/simulations/GrayScott.jl/src/simulation/Simulation_CUDA.jl new file mode 100644 index 0000000000..ee470f00ec --- /dev/null +++ b/examples/simulations/GrayScott.jl/src/simulation/Simulation_CUDA.jl @@ -0,0 +1,160 @@ + +import CUDA + +function _init_fields_cuda(settings::Settings, mcd::MPICartDomain, + T)::Fields{T, 3, <:CUDA.CuArray{T, 3}} + size_x = mcd.proc_sizes[1] + size_y = mcd.proc_sizes[2] + size_z = mcd.proc_sizes[3] + + # should be ones + u = CUDA.ones(T, size_x + 2, size_y + 2, size_z + 2) + v = CUDA.zeros(T, size_x + 2, size_y + 2, size_z + 2) + + u_temp = CUDA.zeros(T, size_x + 2, size_y + 2, size_z + 2) + v_temp = CUDA.zeros(T, size_x + 2, size_y + 2, size_z + 2) + + cu_offsets = CUDA.CuArray(mcd.proc_offsets) + cu_sizes = CUDA.CuArray(mcd.proc_sizes) + + d::Int64 = 6 + minL = Int64(settings.L / 2 - d) + maxL = Int64(settings.L / 2 + d) + + # @TODO: get ideal blocks and threads + threads = (16, 16) + blocks = (settings.L, settings.L) + + CUDA.@cuda threads=threads blocks=blocks _populate_cuda!(u, v, + cu_offsets, + cu_sizes, + minL, maxL) + CUDA.synchronize() + + xy_face_t, xz_face_t, yz_face_t = _get_mpi_faces(size_x, size_y, size_z, T) + + fields = Fields(u, v, u_temp, v_temp, xy_face_t, xz_face_t, yz_face_t) + return fields +end + +function iterate!(fields::Fields{T, N, <:CUDA.CuArray{T, N}}, + settings::Settings, + mcd::MPICartDomain) where {T, N} + _exchange!(fields, mcd) + # this function is the bottleneck + _calculate!(fields, settings, mcd) + + # swap the names + fields.u, fields.u_temp = fields.u_temp, fields.u + fields.v, fields.v_temp = fields.v_temp, fields.v +end + +function _populate_cuda!(u, v, offsets, sizes, minL, maxL) + function is_inside(x, y, z, offsets, sizes)::Bool + if x < offsets[1] || x >= offsets[1] + sizes[1] + return false + end + if y < offsets[2] || y >= offsets[2] + sizes[2] + return false + end + if z < offsets[3] || z >= offsets[3] + sizes[3] + return false + end + + return true + end + + # local coordinates (this are 1-index already) + lz = (CUDA.blockIdx().x - Int32(1)) * CUDA.blockDim().x + + CUDA.threadIdx().x + ly = (CUDA.blockIdx().y - Int32(1)) * CUDA.blockDim().y + + CUDA.threadIdx().y + + if lz <= size(u, 3) && ly <= size(u, 2) + + # get global coordinates + z = lz + offsets[3] - 1 + y = ly + offsets[2] - 1 + + if z >= minL && z <= maxL && y >= minL && y <= maxL + xoff = offsets[1] + + for x in minL:maxL + # check if global coordinates for initialization are inside the region + if !is_inside(x, y, z, offsets, sizes) + continue + end + + # Julia is 1-index, like Fortran :) + u[x - xoff + 2, ly + 1, lz + 1] = 0.25 + v[x - xoff + 2, ly + 1, lz + 1] = 0.33 + end + end + end +end + +function _calculate!(fields::Fields{T, N, <:CUDA.CuArray{T, N}}, + settings::Settings, + mcd::MPICartDomain) where {T, N} + function _calculate_kernel!(u, v, u_temp, v_temp, sizes, Du, Dv, F, K, + noise, dt) + + # local coordinates (this are 1-index already) + k = (CUDA.blockIdx().x - Int32(1)) * CUDA.blockDim().x + + CUDA.threadIdx().x + j = (CUDA.blockIdx().y - Int32(1)) * CUDA.blockDim().y + + CUDA.threadIdx().y + + # loop through non-ghost cells + if k >= 2 && k <= sizes[3] + 1 && j >= 2 && j <= sizes[2] + 1 + # bounds are inclusive + for i in 2:(sizes[1] + 1) + u_ijk = u[i, j, k] + v_ijk = v[i, j, k] + + du = Du * _laplacian(i, j, k, u) - u_ijk * v_ijk^2 + + F * (1.0 - u_ijk) + + noise * rand(Distributions.Uniform(-1, 1)) + + dv = Dv * _laplacian(i, j, k, v) + u_ijk * v_ijk^2 - + (F + K) * v_ijk + + # advance the next step + u_temp[i, j, k] = u_ijk + du * dt + v_temp[i, j, k] = v_ijk + dv * dt + end + end + end + + Du = convert(T, settings.Du) + Dv = convert(T, settings.Dv) + F = convert(T, settings.F) + K = convert(T, settings.k) + noise = convert(T, settings.noise) + dt = convert(T, settings.dt) + + cu_sizes = CUDA.CuArray(mcd.proc_sizes) + + threads = (16, 16) + blocks = (settings.L, settings.L) + + CUDA.@cuda threads=threads blocks=blocks _calculate_kernel!(fields.u, + fields.v, + fields.u_temp, + fields.v_temp, + cu_sizes, + Du, Dv, F, K, + noise, dt) + CUDA.synchronize() +end + +function get_fields(fields::Fields{T, N, <:CUDA.CuArray{T, N}}) where {T, N} + u = Array(fields.u) + u_no_ghost = u[(begin + 1):(end - 1), (begin + 1):(end - 1), + (begin + 1):(end - 1)] + + v = Array(fields.v) + v_no_ghost = v[(begin + 1):(end - 1), (begin + 1):(end - 1), + (begin + 1):(end - 1)] + return u_no_ghost, v_no_ghost +end diff --git a/examples/simulations/GrayScott.jl/src/simulation/Structs.jl b/examples/simulations/GrayScott.jl/src/simulation/Structs.jl new file mode 100644 index 0000000000..ca35fb5611 --- /dev/null +++ b/examples/simulations/GrayScott.jl/src/simulation/Structs.jl @@ -0,0 +1,102 @@ + +""" +Settings carry the settings from the simulation config file (json or yaml formats) + +Using Base.@kwdef macro for easy defaults and enable keyword arguments +Settings(Du = 0.2, noise = 0.2) +See: +https://discourse.julialang.org/t/default-value-of-some-fields-in-a-mutable-struct/33408/24?u=williamfgc +""" +Base.@kwdef mutable struct Settings + L::Int64 = 128 + steps::Int32 = 20000 + plotgap::Int32 = 200 + F::Float64 = 0.04 + k::Float64 = 0 + dt::Float64 = 0.2 + Du::Float64 = 0.05 + Dv::Float64 = 0.1 + noise::Float64 = 0.0 + output::String = "foo.bp" + checkpoint::Bool = false + checkpoint_freq::Int32 = 2000 + checkpoint_output::String = "ckpt.bp" + restart::Bool = false + restart_input::String = "ckpt.bp" + adios_config::String = "adios2.yaml" + adios_span::Bool = false + adios_memory_selection::Bool = false + mesh_type::String = "image" + precision::String = "Float64" + backend::String = "CPU" +end + +SettingsKeys = Set{String}([ + "L", + "steps", + "plotgap", + "F", + "k", + "dt", + "Du", + "Dv", + "noise", + "output", + "checkpoint", + "checkpoint_freq", + "checkpoint_output", + "restart", + "restart_input", + "adios_config", + "adios_span", + "adios_memory_selection", + "mesh_type", + "precision", + "backend", + ]) + +Base.@kwdef mutable struct MPICartDomain + cart_comm::MPI.Comm = MPI.COMM_NULL + + # Cartesian communicator info + # Could used StaticArrays.jl? + # start dims with zeros + dims::Vector{Int32} = zeros(Int32, 3) + coords::Vector{Int32} = zeros(Int32, 3) + + # local process mesh sizes and offsets in Cartesian domain info, using defaults + proc_sizes::Vector{Int64} = [128, 128, 128] + proc_offsets::Vector{Int64} = [1, 1, 1] + + # couldn't use NamedTuples as struct is mutable + proc_neighbors = Dict{String, Int32}("west" => -1, "east" => -1, "up" => -1, + "down" => -1, "north" => -1, + "south" => -1) +end + +""" +Carry the physical field outputs: u and v +Using AbstractArray to allow for Array, CuArray and ROCArray +""" +mutable struct Fields{T, N, A <: AbstractArray{T, N}} + u::A + v::A + u_temp::A + v_temp::A + # MPI Datatypes for halo exchange MPI.Datatype(T) + xy_face_t::MPI.Datatype + xz_face_t::MPI.Datatype + yz_face_t::MPI.Datatype +end + +""" +Carry the I/O information for outputs +""" +struct IOStream + adios::ADIOS2.Adios + io::ADIOS2.AIO + engine::ADIOS2.Engine + var_step::ADIOS2.Variable + var_U::ADIOS2.Variable + var_V::ADIOS2.Variable +end diff --git a/examples/simulations/GrayScott.jl/test/Project.toml b/examples/simulations/GrayScott.jl/test/Project.toml new file mode 100644 index 0000000000..c60df76b67 --- /dev/null +++ b/examples/simulations/GrayScott.jl/test/Project.toml @@ -0,0 +1,3 @@ +[deps] +MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" +Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" diff --git a/examples/simulations/GrayScott.jl/test/functional/functional-GrayScott.jl b/examples/simulations/GrayScott.jl/test/functional/functional-GrayScott.jl new file mode 100644 index 0000000000..46a844a037 --- /dev/null +++ b/examples/simulations/GrayScott.jl/test/functional/functional-GrayScott.jl @@ -0,0 +1,12 @@ + +import GrayScott +import Test: @testset, @test + +@testset "GrayScott" begin MPI.mpiexec() do runcmd + config_file = joinpath(dirname(Base.active_project()), "examples", + "settings-files.json") + + juliacmd = `julia --project gray-scott.jl $config_file` + + @test run(`mpirun -n 4 $juliacmd`).exitcode == 0 +end end \ No newline at end of file diff --git a/examples/simulations/GrayScott.jl/test/runtests.jl b/examples/simulations/GrayScott.jl/test/runtests.jl new file mode 100644 index 0000000000..e795c94ca9 --- /dev/null +++ b/examples/simulations/GrayScott.jl/test/runtests.jl @@ -0,0 +1,26 @@ + +import MPI + +# Run all lightweight unit tests within a single MPI session +MPI.Init() + +verbose = false + +# unit tests for module GrayScott +include(joinpath("unit", "helper", "unit-helperMPI.jl")) + +include(joinpath("unit", "simulation", "unit-Inputs.jl")) +include(joinpath("unit", "simulation", "unit-Simulation.jl")) +include(joinpath("unit", "simulation", "unit-Simulation_CUDA.jl")) +include(joinpath("unit", "simulation", "unit-IO.jl")) + +# unit tests for analysis scripts +include(joinpath("unit", "analysis", "unit-pdfcalc.jl")) + +MPI.Finalize() + +# Command line tests. These are heavier tests launched as separate processes. +# The downside is that only global success can be tested and not internal states. + +# functional tests +# include(joinpath("functional", "functional-GrayScott.jl")) diff --git a/examples/simulations/GrayScott.jl/test/unit/analysis/unit-pdfcalc.jl b/examples/simulations/GrayScott.jl/test/unit/analysis/unit-pdfcalc.jl new file mode 100644 index 0000000000..87ea9b8478 --- /dev/null +++ b/examples/simulations/GrayScott.jl/test/unit/analysis/unit-pdfcalc.jl @@ -0,0 +1,19 @@ + +import Test: @testset, @test, @test_throws + +include(joinpath(dirname(Base.active_project()), "src", "analysis", + "pdfcalc.jl")) + +@testset "unit-analysis.pdfcalc._parse_args" begin + inputs = _parse_arguments(["foo.bp", "bar.bp", "1500"]) + @test inputs["input"] == "foo.bp" + @test inputs["output"] == "bar.bp" + @test inputs["N"] == 1500 + @test inputs["output_inputdata"] == false + + inputs = _parse_arguments(["input.bp", "output.bp", "1000", "true"]) + @test inputs["input"] == "input.bp" + @test inputs["output"] == "output.bp" + @test inputs["N"] == 1000 + @test inputs["output_inputdata"] == true +end diff --git a/examples/simulations/GrayScott.jl/test/unit/helper/unit-helperMPI.jl b/examples/simulations/GrayScott.jl/test/unit/helper/unit-helperMPI.jl new file mode 100644 index 0000000000..33d9f2202f --- /dev/null +++ b/examples/simulations/GrayScott.jl/test/unit/helper/unit-helperMPI.jl @@ -0,0 +1,12 @@ + +import Test: @testset, @test, @test_throws +import GrayScott: Helper + +@testset "unit-Helper.bcast_file_contents" begin + config_file = joinpath(dirname(Base.active_project()), "examples", + "settings-files.json") + + file_contents = Helper.bcast_file_contents(config_file, MPI.COMM_WORLD) + file_contents_expected = String(read(open(config_file, "r"))) + @test file_contents == file_contents_expected +end \ No newline at end of file diff --git a/examples/simulations/GrayScott.jl/test/unit/simulation/unit-IO.jl b/examples/simulations/GrayScott.jl/test/unit/simulation/unit-IO.jl new file mode 100644 index 0000000000..5a33f90ed9 --- /dev/null +++ b/examples/simulations/GrayScott.jl/test/unit/simulation/unit-IO.jl @@ -0,0 +1,36 @@ + +import Test: @testset, @test, @test_throws + +import ADIOS2 + +# import submodule +import GrayScott: IO +# import types +import GrayScott: Settings, MPICartDomain, Fields + +@testset "unit-IO.init" begin + settings = Settings() + mpi_cart_domain = MPICartDomain() + fields = Simulation.init_fields(settings, mpi_cart_domain, Float32) + + @test eltype(fields.u) == Float32 + @test eltype(fields.v) == Float32 + + stream = IO.init(settings, mpi_cart_domain, fields) + + @test ADIOS2.name(stream.engine) == "foo.bp" + IO.close!(stream) + + # @TODO: needs to be done from rank==0 only + # Base.Filesystem.rm("foo.bp", force = true, recursive = true) +end + +@testset "unit-IO.write" begin + settings = Settings() + settings.L = 6 + mpi_cart_domain = Simulation.init_domain(settings, MPI.COMM_WORLD) + fields = Simulation.init_fields(settings, mpi_cart_domain, Float32) + stream = IO.init(settings, mpi_cart_domain, fields) + IO.write_step!(stream, Int32(0), fields) + IO.close!(stream) +end diff --git a/examples/simulations/GrayScott.jl/test/unit/simulation/unit-Inputs.jl b/examples/simulations/GrayScott.jl/test/unit/simulation/unit-Inputs.jl new file mode 100644 index 0000000000..fb77325de5 --- /dev/null +++ b/examples/simulations/GrayScott.jl/test/unit/simulation/unit-Inputs.jl @@ -0,0 +1,15 @@ + +import Test: @testset, @test, @test_throws +import GrayScott: Inputs + +# Unfortunately due to MPI being a Singleton, single MPI.Init() +# these unit tests don't run as independent files + +@testset "unit-Inputs.get_settings" begin + config_file = joinpath(dirname(Base.active_project()), "examples", + "settings-files.json") + Inputs.get_settings([config_file], MPI.COMM_WORLD) + + @test_throws(ArgumentError, + Inputs.get_settings(["hello.nojson"], MPI.COMM_WORLD)) +end diff --git a/examples/simulations/GrayScott.jl/test/unit/simulation/unit-Simulation.jl b/examples/simulations/GrayScott.jl/test/unit/simulation/unit-Simulation.jl new file mode 100644 index 0000000000..ad43a8b49f --- /dev/null +++ b/examples/simulations/GrayScott.jl/test/unit/simulation/unit-Simulation.jl @@ -0,0 +1,34 @@ + +import Test: @testset, @test, @test_throws +# import submodule +import GrayScott: Simulation +# import types +import GrayScott: Settings, MPICartDomain, Fields + +# Unfortunately due to MPI being a Singleton, single MPI.Init() +# these unit tests don't run as independent files + +@testset "unit-Simulation.init" begin + settings = Settings() + mpi_cart_domain = Simulation.init_domain(settings, MPI.COMM_WORLD) + fields = Simulation.init_fields(settings, mpi_cart_domain, Float32) + + @test typeof(fields) == Fields{Float32, 3, Array{Float32, 3}} +end + +@testset "unit-Simulation.iterate" begin + settings = Settings() + settings.L = 2 + mpi_cart_domain = Simulation.init_domain(settings, MPI.COMM_WORLD) + fields = Simulation.init_fields(settings, mpi_cart_domain, Float32) + + Simulation.iterate!(fields, settings, mpi_cart_domain) + + if verbose + sleep(0.01) + rank = MPI.Comm_rank(MPI.COMM_WORLD) + @show rank, fields.v + end +end + +#end diff --git a/examples/simulations/GrayScott.jl/test/unit/simulation/unit-Simulation_CUDA.jl b/examples/simulations/GrayScott.jl/test/unit/simulation/unit-Simulation_CUDA.jl new file mode 100644 index 0000000000..e3c3a6fc07 --- /dev/null +++ b/examples/simulations/GrayScott.jl/test/unit/simulation/unit-Simulation_CUDA.jl @@ -0,0 +1,28 @@ + +import Test: @testset, @test, @test_throws +# import submodule +import GrayScott: Simulation +# import types +import GrayScott: Settings, MPICartDomain, Fields + +@testset "unit-Simulation.init_fields-cuda" begin + function test_init_cuda(L) + settings = Settings() + settings.L = L + mpi_cart_domain = Simulation.init_domain(settings, MPI.COMM_WORLD) + + fields = Simulation.init_fields(settings, mpi_cart_domain, Float32) + + settings.backend = "CUDA" + fields_cuda = Simulation.init_fields(settings, mpi_cart_domain, Float32) + + @test fields.u ≈ Array(fields_cuda.u) + @test fields.v ≈ Array(fields_cuda.v) + end + + test_init_cuda(8) + test_init_cuda(16) + test_init_cuda(32) + test_init_cuda(64) + test_init_cuda(128) +end \ No newline at end of file diff --git a/examples/simulations/gray-scott-kokkos/CMakeLists.txt b/examples/simulations/gray-scott-kokkos/CMakeLists.txt new file mode 100644 index 0000000000..b43362cf3f --- /dev/null +++ b/examples/simulations/gray-scott-kokkos/CMakeLists.txt @@ -0,0 +1,47 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +cmake_minimum_required(VERSION 3.12) +project(ADIOS2SimulationsGrayScottKokkosExample) + +# CXX Compiler settings only in for this example +set(CMAKE_CXX_STANDARD 17) +set(CMAKE_CXX_STANDARD_REQUIRED ON) + +if(NOT TARGET adios2_core) + set(_components CXX) + + find_package(MPI COMPONENTS C) + if(MPI_FOUND) + # Workaround for various MPI implementations forcing the link of C++ bindings + add_definitions(-DOMPI_SKIP_MPICXX -DMPICH_SKIP_MPICXX) + + list(APPEND _components MPI) + endif() + + find_package(Kokkos 3.7 QUIET) + if(Kokkos_FOUND AND DEFINED Kokkos_CXX_COMPILER) + set(CMAKE_CXX_COMPILER "${Kokkos_CXX_COMPILER}") + endif() + + find_package(ADIOS2 REQUIRED COMPONENTS ${_components}) +else() + if(DEFINED Kokkos_CXX_COMPILER) + set(CMAKE_CXX_COMPILER "${Kokkos_CXX_COMPILER}") + endif() +endif() + +if(ADIOS2_HAVE_MPI AND ADIOS2_HAVE_Kokkos) + add_executable(adios2_simulations_gray-scott-kokkos + main.cpp + gray-scott.cpp + settings.cpp + writer.cpp + restart.cpp + ) + kokkos_compilation(SOURCE gray-scott.cpp) + target_link_libraries(adios2_simulations_gray-scott-kokkos adios2::cxx11_mpi MPI::MPI_C Kokkos::kokkos) + install(TARGETS adios2_simulations_gray-scott-kokkos RUNTIME DESTINATION ${CMAKE_INSTALL_BINDIR}) +endif() diff --git a/examples/simulations/gray-scott-kokkos/README.md b/examples/simulations/gray-scott-kokkos/README.md new file mode 100644 index 0000000000..24f6213b5e --- /dev/null +++ b/examples/simulations/gray-scott-kokkos/README.md @@ -0,0 +1,2 @@ +Kokkos version of Gray-Scott. +Please use the installed Gray-Scott example directory but run adios2-gray-scott-kokkos binary. diff --git a/examples/simulations/gray-scott-kokkos/gray-scott.cpp b/examples/simulations/gray-scott-kokkos/gray-scott.cpp new file mode 100644 index 0000000000..b6f6cd4b7c --- /dev/null +++ b/examples/simulations/gray-scott-kokkos/gray-scott.cpp @@ -0,0 +1,330 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + * + * The solver is based on Hiroshi Watanabe's 2D Gray-Scott reaction diffusion + * code available at: https://github.com/kaityo256/sevendayshpc/tree/master/day5 + */ + +#include "gray-scott.h" + +#include +#include // runtime_error +#include + +GrayScott::GrayScott(const Settings &settings, MPI_Comm comm) +: settings(settings), comm(comm), rand_pool(5374857) +{ +} + +GrayScott::~GrayScott() {} + +void GrayScott::init() +{ + init_mpi(); + init_field(); +} + +void GrayScott::iterate() +{ + auto temp_u = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace{}, u); + auto temp_v = Kokkos::create_mirror_view_and_copy(Kokkos::HostSpace{}, v); + exchange(temp_u, temp_v); + Kokkos::deep_copy(u, temp_u); + Kokkos::deep_copy(v, temp_v); + + calc(); + + std::swap(u, u2); + std::swap(v, v2); +} + +void GrayScott::restart(Kokkos::View &u_in, + Kokkos::View &v_in) +{ + auto const expected_len = (size_x + 2) * (size_y + 2) * (size_z + 2); + if (u_in.size() == expected_len) + { + u = u_in; + v = v_in; + } + else + { + throw std::runtime_error("Restart with incompatible array size, expected " + + std::to_string(expected_len) + " got " + + std::to_string(u_in.size()) + " elements"); + } +} + +const Kokkos::View GrayScott::u_ghost() const { return u; } + +const Kokkos::View GrayScott::v_ghost() const { return v; } + +Kokkos::View GrayScott::u_noghost() const +{ + return data_noghost(u); +} + +Kokkos::View GrayScott::v_noghost() const +{ + return data_noghost(v); +} + +void GrayScott::u_noghost(Kokkos::View u_no_ghost) const +{ + data_noghost(u, u_no_ghost); +} + +void GrayScott::v_noghost(Kokkos::View v_no_ghost) const +{ + data_noghost(v, v_no_ghost); +} + +Kokkos::View +GrayScott::data_noghost(const Kokkos::View &data) const +{ + Kokkos::View buf("noghost_temp", size_x, size_y, size_z); + data_no_ghost_common(data, buf); + return buf; +} + +void GrayScott::data_noghost(const Kokkos::View &data, + Kokkos::View data_no_ghost) const +{ + data_no_ghost_common(data, data_no_ghost); +} + +void GrayScott::init_field() +{ + Kokkos::resize(u, size_x + 2, size_y + 2, size_z + 2); + Kokkos::deep_copy(u, 1.0); + Kokkos::resize(v, size_x + 2, size_y + 2, size_z + 2); + Kokkos::deep_copy(v, 0.0); + Kokkos::resize(u2, size_x + 2, size_y + 2, size_z + 2); + Kokkos::deep_copy(u2, 0.0); + Kokkos::resize(v2, size_x + 2, size_y + 2, size_z + 2); + Kokkos::deep_copy(v2, 0.0); + + const int d = 6; + auto const L = settings.L; + auto const settingsL = static_cast(settings.L); + auto const temp_u = u; + auto const temp_v = v; + size_t const ox = offset_x, oy = offset_y, oz = offset_z; + size_t const sx = size_x, sy = size_y; + auto const min_z = std::max(L / 2 - d, offset_z); + auto const max_z = std::min(L / 2 + d, offset_z + size_z); + Kokkos::parallel_for( + "init_buffers", Kokkos::RangePolicy<>(min_z, max_z), KOKKOS_LAMBDA(int z) { + for (int y = settingsL / 2 - d; y < settingsL / 2 + d; y++) + { + if (y < static_cast(oy)) + continue; + if (y >= static_cast(oy + sy)) + continue; + for (int x = settingsL / 2 - d; x < settingsL / 2 + d; x++) + { + if (x < static_cast(ox)) + continue; + if (x >= static_cast(ox + sx)) + continue; + temp_u(x - ox + 1, y - oy + 1, z - oz + 1) = 0.25; + temp_v(x - ox + 1, y - oy + 1, z - oz + 1) = 0.33; + } + } + }); +} + +void GrayScott::calc() +{ + auto const temp_u = u; + auto const temp_v = v; + auto const temp_u2 = u2; + auto const temp_v2 = v2; + auto const Du = settings.Du; + auto const Dv = settings.Dv; + auto const dt = settings.dt; + auto const F = settings.F; + auto const k = settings.k; + auto const noise = settings.noise; + size_t const sx = size_x, sy = size_y, sz = size_z; + auto const random_pool = rand_pool; + Kokkos::parallel_for( + "calc_gray_scott", Kokkos::RangePolicy<>(1, sz + 1), KOKKOS_LAMBDA(int z) { + RandomPool::generator_type generator = random_pool.get_state(); + double ts; + for (int y = 1; y < static_cast(sy) + 1; y++) + { + for (int x = 1; x < static_cast(sx) + 1; x++) + { + double du, dv; + // laplacian for u + ts = 0; + ts += temp_u(x - 1, y, z); + ts += temp_u(x + 1, y, z); + ts += temp_u(x, y - 1, z); + ts += temp_u(x, y + 1, z); + ts += temp_u(x, y, z - 1); + ts += temp_u(x, y, z + 1); + ts += -6.0 * temp_u(x, y, z); + ts /= 6.0; + du = Du * ts; + + // laplacian for v + ts = 0; + ts += temp_v(x - 1, y, z); + ts += temp_v(x + 1, y, z); + ts += temp_v(x, y - 1, z); + ts += temp_v(x, y + 1, z); + ts += temp_v(x, y, z - 1); + ts += temp_v(x, y, z + 1); + ts += -6.0 * temp_v(x, y, z); + ts /= 6.0; + dv = Dv * ts; + + du += (-temp_u(x, y, z) * temp_v(x, y, z) * temp_v(x, y, z) + + F * (1.0 - temp_u(x, y, z))); + dv += (temp_u(x, y, z) * temp_v(x, y, z) * temp_v(x, y, z) - + (F + k) * temp_v(x, y, z)); + du += noise * generator.frand(-1.f, 1.f); + temp_u2(x, y, z) = temp_u(x, y, z) + du * dt; + temp_v2(x, y, z) = temp_v(x, y, z) + dv * dt; + } + } + random_pool.free_state(generator); + }); +} + +void GrayScott::init_mpi() +{ + int dims[3] = {}; + const int periods[3] = {1, 1, 1}; + int coords[3] = {}; + + MPI_Comm_rank(comm, &rank); + MPI_Comm_size(comm, &procs); + + MPI_Dims_create(procs, 3, dims); + npx = dims[0]; + npy = dims[1]; + npz = dims[2]; + + MPI_Cart_create(comm, 3, dims, periods, 0, &cart_comm); + MPI_Cart_coords(cart_comm, rank, 3, coords); + px = coords[0]; + py = coords[1]; + pz = coords[2]; + + size_x = settings.L / npx; + size_y = settings.L / npy; + size_z = settings.L / npz; + + if (px < settings.L % npx) + { + size_x++; + } + if (py < settings.L % npy) + { + size_y++; + } + if (pz < settings.L % npz) + { + size_z++; + } + + offset_x = (settings.L / npx * px) + std::min(settings.L % npx, px); + offset_y = (settings.L / npy * py) + std::min(settings.L % npy, py); + offset_z = (settings.L / npz * pz) + std::min(settings.L % npz, pz); + + MPI_Cart_shift(cart_comm, 0, 1, &west, &east); + MPI_Cart_shift(cart_comm, 1, 1, &down, &up); + MPI_Cart_shift(cart_comm, 2, 1, &south, &north); + + // XY faces: size_x * (size_y + 2) + MPI_Type_vector(static_cast(size_y + 2), static_cast(size_x), + static_cast(size_x + 2), MPI_DOUBLE, &xy_face_type); + MPI_Type_commit(&xy_face_type); + + // XZ faces: size_x * size_z + MPI_Type_vector(static_cast(size_z), static_cast(size_x), + static_cast((size_x + 2) * (size_y + 2)), MPI_DOUBLE, &xz_face_type); + MPI_Type_commit(&xz_face_type); + + // YZ faces: (size_y + 2) * (size_z + 2) + MPI_Type_vector(static_cast((size_y + 2) * (size_z + 2)), 1, static_cast(size_x + 2), + MPI_DOUBLE, &yz_face_type); + MPI_Type_commit(&yz_face_type); +} + +void GrayScott::exchange_xy( + Kokkos::View local_data) const +{ + MPI_Status st; + + // Send XY face z=size_z to north and receive z=0 from south + MPI_Sendrecv(&local_data.data()[l2i(1, 0, static_cast(size_z))], 1, xy_face_type, north, 1, + &local_data.data()[l2i(1, 0, 0)], 1, xy_face_type, south, 1, cart_comm, &st); + // Send XY face z=1 to south and receive z=size_z+1 from north + MPI_Sendrecv(&local_data.data()[l2i(1, 0, 1)], 1, xy_face_type, south, 1, + &local_data.data()[l2i(1, 0, static_cast(size_z + 1))], 1, xy_face_type, + north, 1, cart_comm, &st); +} + +void GrayScott::exchange_xz( + Kokkos::View local_data) const +{ + MPI_Status st; + + // Send XZ face y=size_y to up and receive y=0 from down + MPI_Sendrecv(&local_data.data()[l2i(1, static_cast(size_y), 1)], 1, xz_face_type, up, 2, + &local_data.data()[l2i(1, 0, 1)], 1, xz_face_type, down, 2, cart_comm, &st); + // Send XZ face y=1 to down and receive y=size_y+1 from up + MPI_Sendrecv(&local_data.data()[l2i(1, 1, 1)], 1, xz_face_type, down, 2, + &local_data.data()[l2i(1, static_cast(size_y + 1), 1)], 1, xz_face_type, up, + 2, cart_comm, &st); +} + +void GrayScott::exchange_yz( + Kokkos::View local_data) const +{ + MPI_Status st; + + // Send YZ face x=size_x to east and receive x=0 from west + MPI_Sendrecv(&local_data.data()[l2i(static_cast(size_x), 0, 0)], 1, yz_face_type, east, 3, + &local_data.data()[l2i(0, 0, 0)], 1, yz_face_type, west, 3, cart_comm, &st); + // Send YZ face x=1 to west and receive x=size_x+1 from east + MPI_Sendrecv(&local_data.data()[l2i(1, 0, 0)], 1, yz_face_type, west, 3, + &local_data.data()[l2i(static_cast(size_x + 1), 0, 0)], 1, yz_face_type, east, + 3, cart_comm, &st); +} + +void GrayScott::exchange(Kokkos::View u, + Kokkos::View v) const +{ + exchange_xy(u); + exchange_xz(u); + exchange_yz(u); + + exchange_xy(v); + exchange_xz(v); + exchange_yz(v); +} + +void GrayScott::data_no_ghost_common( + const Kokkos::View &data, + Kokkos::View data_no_ghost) const +{ + auto const sx = size_x; + auto const sy = size_y; + auto const sz = size_z; + Kokkos::parallel_for( + "updateBuffer", Kokkos::RangePolicy<>(1, sz + 1), KOKKOS_LAMBDA(int z) { + for (int y = 1; y < static_cast(sy) + 1; y++) + { + for (int x = 1; x < static_cast(sx) + 1; x++) + { + data_no_ghost(x - 1, y - 1, z - 1) = data(x, y, z); + } + } + }); +} diff --git a/examples/simulations/gray-scott-kokkos/gray-scott.h b/examples/simulations/gray-scott-kokkos/gray-scott.h new file mode 100644 index 0000000000..26553c8c07 --- /dev/null +++ b/examples/simulations/gray-scott-kokkos/gray-scott.h @@ -0,0 +1,102 @@ +/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + */ + +#ifndef __GRAY_SCOTT_H__ +#define __GRAY_SCOTT_H__ + +#include + +#include +#include +#include + +#include "settings.h" + +class GrayScott +{ +public: + // Dimension of process grid + size_t npx, npy, npz; + // Coordinate of this rank in process grid + size_t px, py, pz; + // Dimension of local array + size_t size_x, size_y, size_z; + // Offset of local array in the global array + size_t offset_x, offset_y, offset_z; + + GrayScott(const Settings &settings, MPI_Comm comm); + ~GrayScott(); + + void init(); + void iterate(); + void restart(Kokkos::View &u, + Kokkos::View &v); + + const Kokkos::View u_ghost() const; + const Kokkos::View v_ghost() const; + + Kokkos::View u_noghost() const; + Kokkos::View v_noghost() const; + + void u_noghost(Kokkos::View u_no_ghost) const; + void v_noghost(Kokkos::View v_no_ghost) const; + + Settings settings; + + Kokkos::View u, v, u2, v2; + + int rank, procs; + int west, east, up, down, north, south; + MPI_Comm comm; + MPI_Comm cart_comm; + + // MPI datatypes for halo exchange + MPI_Datatype xy_face_type; + MPI_Datatype xz_face_type; + MPI_Datatype yz_face_type; + + using RandomPool = Kokkos::Random_XorShift64_Pool; + RandomPool rand_pool; + + // Setup cartesian communicator data types + void init_mpi(); + // Setup initial conditions + void init_field(); + + // Process simulation for one timestep + void calc(); + + // Exchange faces with neighbors + void exchange(Kokkos::View u, + Kokkos::View v) const; + // Exchange XY faces with north/south + void + exchange_xy(Kokkos::View local_data) const; + // Exchange XZ faces with up/down + void + exchange_xz(Kokkos::View local_data) const; + // Exchange YZ faces with west/east + void + exchange_yz(Kokkos::View local_data) const; + + // Return a copy of data with ghosts removed + Kokkos::View + data_noghost(const Kokkos::View &data) const; + + // pointer version + void data_noghost(const Kokkos::View &data, + Kokkos::View no_ghost) const; + + // Convert local coordinate to local index + KOKKOS_FUNCTION int l2i(int x, int y, int z) const + { + return static_cast(x + y * (size_x + 2) + z * (size_x + 2) * (size_y + 2)); + } + + void data_no_ghost_common(const Kokkos::View &data, + Kokkos::View data_no_ghost) const; +}; + +#endif diff --git a/examples/simulations/gray-scott-kokkos/json.hpp b/examples/simulations/gray-scott-kokkos/json.hpp new file mode 100644 index 0000000000..1e7cf51e0a --- /dev/null +++ b/examples/simulations/gray-scott-kokkos/json.hpp @@ -0,0 +1,20274 @@ +/* + __ _____ _____ _____ + __| | __| | | | JSON for Modern C++ +| | |__ | | | | | | version 3.4.0 +|_____|_____|_____|_|___| https://github.com/nlohmann/json + +Licensed under the MIT License . +SPDX-License-Identifier: MIT +Copyright (c) 2013-2018 Niels Lohmann . + +Permission is hereby granted, free of charge, to any person obtaining a copy +of this software and associated documentation files (the "Software"), to deal +in the Software without restriction, including without limitation the rights +to use, copy, modify, merge, publish, distribute, sublicense, and/or sell +copies of the Software, and to permit persons to whom the Software is +furnished to do so, subject to the following conditions: + +The above copyright notice and this permission notice shall be included in all +copies or substantial portions of the Software. + +THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR +IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, +FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE +AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER +LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, +OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE +SOFTWARE. +*/ + +#ifndef NLOHMANN_JSON_HPP +#define NLOHMANN_JSON_HPP + +#define NLOHMANN_JSON_VERSION_MAJOR 3 +#define NLOHMANN_JSON_VERSION_MINOR 4 +#define NLOHMANN_JSON_VERSION_PATCH 0 + +#include // all_of, find, for_each +#include // assert +#include // and, not, or +#include // nullptr_t, ptrdiff_t, size_t +#include // hash, less +#include // initializer_list +#include // istream, ostream +#include // iterator_traits, random_access_iterator_tag +#include // accumulate +#include // string, stoi, to_string +#include // declval, forward, move, pair, swap + +// #include +#ifndef NLOHMANN_JSON_FWD_HPP +#define NLOHMANN_JSON_FWD_HPP + +#include // int64_t, uint64_t +#include // map +#include // allocator +#include // string +#include // vector + +/*! +@brief namespace for Niels Lohmann +@see https://github.com/nlohmann +@since version 1.0.0 +*/ +namespace nlohmann +{ +/*! +@brief default JSONSerializer template argument + +This serializer ignores the template arguments and uses ADL +([argument-dependent lookup](https://en.cppreference.com/w/cpp/language/adl)) +for serialization. +*/ +template +struct adl_serializer; + +template class ObjectType = + std::map, + template class ArrayType = std::vector, + class StringType = std::string, class BooleanType = bool, + class NumberIntegerType = std::int64_t, + class NumberUnsignedType = std::uint64_t, + class NumberFloatType = double, + template class AllocatorType = std::allocator, + template class JSONSerializer = + adl_serializer> +class basic_json; + +/*! +@brief JSON Pointer + +A JSON pointer defines a string syntax for identifying a specific value +within a JSON document. It can be used with functions `at` and +`operator[]`. Furthermore, JSON pointers are the base for JSON patches. + +@sa [RFC 6901](https://tools.ietf.org/html/rfc6901) + +@since version 2.0.0 +*/ +template +class json_pointer; + +/*! +@brief default JSON class + +This type is the default specialization of the @ref basic_json class which +uses the standard template types. + +@since version 1.0.0 +*/ +using json = basic_json<>; +} // namespace nlohmann + +#endif + +// #include + + +// This file contains all internal macro definitions +// You MUST include macro_unscope.hpp at the end of json.hpp to undef all of them + +// exclude unsupported compilers +#if !defined(JSON_SKIP_UNSUPPORTED_COMPILER_CHECK) + #if defined(__clang__) + #if (__clang_major__ * 10000 + __clang_minor__ * 100 + __clang_patchlevel__) < 30400 + #error "unsupported Clang version - see https://github.com/nlohmann/json#supported-compilers" + #endif + #elif defined(__GNUC__) && !(defined(__ICC) || defined(__INTEL_COMPILER)) + #if (__GNUC__ * 10000 + __GNUC_MINOR__ * 100 + __GNUC_PATCHLEVEL__) < 40800 + #error "unsupported GCC version - see https://github.com/nlohmann/json#supported-compilers" + #endif + #endif +#endif + +// disable float-equal warnings on GCC/clang +#if defined(__clang__) || defined(__GNUC__) || defined(__GNUG__) + #pragma GCC diagnostic push + #pragma GCC diagnostic ignored "-Wfloat-equal" +#endif + +// disable documentation warnings on clang +#if defined(__clang__) + #pragma GCC diagnostic push + #pragma GCC diagnostic ignored "-Wdocumentation" +#endif + +// allow for portable deprecation warnings +#if defined(__clang__) || defined(__GNUC__) || defined(__GNUG__) + #define JSON_DEPRECATED __attribute__((deprecated)) +#elif defined(_MSC_VER) + #define JSON_DEPRECATED __declspec(deprecated) +#else + #define JSON_DEPRECATED +#endif + +// allow to disable exceptions +#if (defined(__cpp_exceptions) || defined(__EXCEPTIONS) || defined(_CPPUNWIND)) && !defined(JSON_NOEXCEPTION) + #define JSON_THROW(exception) throw exception + #define JSON_TRY try + #define JSON_CATCH(exception) catch(exception) + #define JSON_INTERNAL_CATCH(exception) catch(exception) +#else + #define JSON_THROW(exception) std::abort() + #define JSON_TRY if(true) + #define JSON_CATCH(exception) if(false) + #define JSON_INTERNAL_CATCH(exception) if(false) +#endif + +// override exception macros +#if defined(JSON_THROW_USER) + #undef JSON_THROW + #define JSON_THROW JSON_THROW_USER +#endif +#if defined(JSON_TRY_USER) + #undef JSON_TRY + #define JSON_TRY JSON_TRY_USER +#endif +#if defined(JSON_CATCH_USER) + #undef JSON_CATCH + #define JSON_CATCH JSON_CATCH_USER + #undef JSON_INTERNAL_CATCH + #define JSON_INTERNAL_CATCH JSON_CATCH_USER +#endif +#if defined(JSON_INTERNAL_CATCH_USER) + #undef JSON_INTERNAL_CATCH + #define JSON_INTERNAL_CATCH JSON_INTERNAL_CATCH_USER +#endif + +// manual branch prediction +#if defined(__clang__) || defined(__GNUC__) || defined(__GNUG__) + #define JSON_LIKELY(x) __builtin_expect(!!(x), 1) + #define JSON_UNLIKELY(x) __builtin_expect(!!(x), 0) +#else + #define JSON_LIKELY(x) x + #define JSON_UNLIKELY(x) x +#endif + +// C++ language standard detection +#if (defined(__cplusplus) && __cplusplus >= 201703L) || (defined(_HAS_CXX17) && _HAS_CXX17 == 1) // fix for issue #464 + #define JSON_HAS_CPP_17 + #define JSON_HAS_CPP_14 +#elif (defined(__cplusplus) && __cplusplus >= 201402L) || (defined(_HAS_CXX14) && _HAS_CXX14 == 1) + #define JSON_HAS_CPP_14 +#endif + +/*! +@brief macro to briefly define a mapping between an enum and JSON +@def NLOHMANN_JSON_SERIALIZE_ENUM +@since version 3.4.0 +*/ +#define NLOHMANN_JSON_SERIALIZE_ENUM(ENUM_TYPE, ...) \ + template \ + inline void to_json(BasicJsonType& j, const ENUM_TYPE& e) \ + { \ + static_assert(std::is_enum::value, #ENUM_TYPE " must be an enum!"); \ + static const std::pair m[] = __VA_ARGS__; \ + auto it = std::find_if(std::begin(m), std::end(m), \ + [e](const std::pair& ej_pair) -> bool \ + { \ + return ej_pair.first == e; \ + }); \ + j = ((it != std::end(m)) ? it : std::begin(m))->second; \ + } \ + template \ + inline void from_json(const BasicJsonType& j, ENUM_TYPE& e) \ + { \ + static_assert(std::is_enum::value, #ENUM_TYPE " must be an enum!"); \ + static const std::pair m[] = __VA_ARGS__; \ + auto it = std::find_if(std::begin(m), std::end(m), \ + [j](const std::pair& ej_pair) -> bool \ + { \ + return ej_pair.second == j; \ + }); \ + e = ((it != std::end(m)) ? it : std::begin(m))->first; \ + } + +// Ugly macros to avoid uglier copy-paste when specializing basic_json. They +// may be removed in the future once the class is split. + +#define NLOHMANN_BASIC_JSON_TPL_DECLARATION \ + template class ObjectType, \ + template class ArrayType, \ + class StringType, class BooleanType, class NumberIntegerType, \ + class NumberUnsignedType, class NumberFloatType, \ + template class AllocatorType, \ + template class JSONSerializer> + +#define NLOHMANN_BASIC_JSON_TPL \ + basic_json + +// #include + + +#include // not +#include // size_t +#include // conditional, enable_if, false_type, integral_constant, is_constructible, is_integral, is_same, remove_cv, remove_reference, true_type + +namespace nlohmann +{ +namespace detail +{ +// alias templates to reduce boilerplate +template +using enable_if_t = typename std::enable_if::type; + +template +using uncvref_t = typename std::remove_cv::type>::type; + +// implementation of C++14 index_sequence and affiliates +// source: https://stackoverflow.com/a/32223343 +template +struct index_sequence +{ + using type = index_sequence; + using value_type = std::size_t; + static constexpr std::size_t size() noexcept + { + return sizeof...(Ints); + } +}; + +template +struct merge_and_renumber; + +template +struct merge_and_renumber, index_sequence> + : index_sequence < I1..., (sizeof...(I1) + I2)... > {}; + +template +struct make_index_sequence + : merge_and_renumber < typename make_index_sequence < N / 2 >::type, + typename make_index_sequence < N - N / 2 >::type > {}; + +template<> struct make_index_sequence<0> : index_sequence<> {}; +template<> struct make_index_sequence<1> : index_sequence<0> {}; + +template +using index_sequence_for = make_index_sequence; + +// dispatch utility (taken from ranges-v3) +template struct priority_tag : priority_tag < N - 1 > {}; +template<> struct priority_tag<0> {}; + +// taken from ranges-v3 +template +struct static_const +{ + static constexpr T value{}; +}; + +template +constexpr T static_const::value; +} // namespace detail +} // namespace nlohmann + +// #include + + +#include // not +#include // numeric_limits +#include // false_type, is_constructible, is_integral, is_same, true_type +#include // declval + +// #include + +// #include + +// #include + + +#include + +// #include + + +namespace nlohmann +{ +namespace detail +{ +template struct make_void +{ + using type = void; +}; +template using void_t = typename make_void::type; +} // namespace detail +} // namespace nlohmann + + +// http://en.cppreference.com/w/cpp/experimental/is_detected +namespace nlohmann +{ +namespace detail +{ +struct nonesuch +{ + nonesuch() = delete; + ~nonesuch() = delete; + nonesuch(nonesuch const&) = delete; + void operator=(nonesuch const&) = delete; +}; + +template class Op, + class... Args> +struct detector +{ + using value_t = std::false_type; + using type = Default; +}; + +template class Op, class... Args> +struct detector>, Op, Args...> +{ + using value_t = std::true_type; + using type = Op; +}; + +template