diff --git a/src/EFCore.Sqlite.Core/Migrations/SqliteMigrationsSqlGenerator.cs b/src/EFCore.Sqlite.Core/Migrations/SqliteMigrationsSqlGenerator.cs
index d1d6e7e23ff..69a41d1c099 100644
--- a/src/EFCore.Sqlite.Core/Migrations/SqliteMigrationsSqlGenerator.cs
+++ b/src/EFCore.Sqlite.Core/Migrations/SqliteMigrationsSqlGenerator.cs
@@ -1,6 +1,7 @@
 // Licensed to the .NET Foundation under one or more agreements.
 // The .NET Foundation licenses this file to you under the MIT license.
 
+using System.Linq;
 using System.Text;
 using Microsoft.EntityFrameworkCore.Sqlite.Internal;
 using Microsoft.EntityFrameworkCore.Sqlite.Metadata.Internal;
@@ -373,6 +374,22 @@ private IReadOnlyList<MigrationOperation> RewriteOperations(
                     continue;
                 }
 
+                // Skip autoincrement primary key columns that are being added in this migration
+                var isAutoincrement = column.FindAnnotation(SqliteAnnotationNames.Autoincrement)?.Value as bool? == true;
+                var isPrimaryKey = column.Table.PrimaryKey?.Columns.Contains(column) == true;
+                
+                if (isAutoincrement && isPrimaryKey)
+                {
+                    // Check if this column is being added in the current migration
+                    var isNewColumn = migrationOperations.OfType<AddColumnOperation>()
+                        .Any(op => op.Table == key.Table && op.Schema == key.Schema && op.Name == column.Name);
+                    
+                    if (isNewColumn)
+                    {
+                        continue; // Skip newly added autoincrement columns
+                    }
+                }
+
                 if (first)
                 {
                     first = false;
diff --git a/test/EFCore.Sqlite.FunctionalTests/Migrations/MigrationsSqliteTest.cs b/test/EFCore.Sqlite.FunctionalTests/Migrations/MigrationsSqliteTest.cs
index c97206ec9af..43cc3985995 100644
--- a/test/EFCore.Sqlite.FunctionalTests/Migrations/MigrationsSqliteTest.cs
+++ b/test/EFCore.Sqlite.FunctionalTests/Migrations/MigrationsSqliteTest.cs
@@ -2275,6 +2275,79 @@ protected override bool AssertConstraintNames
     protected override string NonDefaultCollation
         => "NOCASE";
 
+    [ConditionalFact]
+    public virtual async Task Replace_string_primary_key_with_autoincrement_identity()
+    {
+        await Test(
+            builder => builder.Entity(
+                "Person", e =>
+                {
+                    e.Property<string>("Ssn");
+                    e.HasKey("Ssn");
+                }),
+            builder => { },
+            builder => builder.Entity(
+                "Person", e =>
+                {
+                    e.Property<int>("Id").ValueGeneratedOnAdd();
+                    e.Property<string>("Ssn");
+                    e.HasKey("Id");
+                    e.HasIndex("Ssn").IsUnique();
+                }),
+            model =>
+            {
+                var table = Assert.Single(model.Tables);
+                Assert.Equal("Person", table.Name);
+                Assert.Equal(2, table.Columns.Count());
+                
+                var idColumn = Assert.Single(table.Columns, c => c.Name == "Id");
+                Assert.False(idColumn.IsNullable);
+            });
+
+        // Expectation: the INSERT should NOT include the Id column because it's AUTOINCREMENT
+        AssertSql(
+            """
+ALTER TABLE "Person" ADD "Id" INTEGER NOT NULL DEFAULT 0;
+""",
+            //
+            """
+CREATE UNIQUE INDEX "IX_Person_Ssn" ON "Person" ("Ssn");
+""",
+            //
+            """
+CREATE TABLE "ef_temp_Person" (
+    "Id" INTEGER NOT NULL CONSTRAINT "PK_Person" PRIMARY KEY AUTOINCREMENT,
+    "Ssn" TEXT NULL
+);
+""",
+            //
+            """
+INSERT INTO "ef_temp_Person" ("Ssn")
+SELECT "Ssn"
+FROM "Person";
+""",
+            //
+            """
+PRAGMA foreign_keys = 0;
+""",
+            //
+            """
+DROP TABLE "Person";
+""",
+            //
+            """
+ALTER TABLE "ef_temp_Person" RENAME TO "Person";
+""",
+            //
+            """
+PRAGMA foreign_keys = 1;
+""",
+            //
+            """
+CREATE UNIQUE INDEX "IX_Person_Ssn" ON "Person" ("Ssn");
+""");
+    }
+
     protected virtual async Task AssertNotSupportedAsync(Func<Task> action, string? message = null)
     {
         var ex = await Assert.ThrowsAsync<NotSupportedException>(action);