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adding easyconfigs: purge_dups-1.2.6-foss-2023b.eb
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easybuild/easyconfigs/p/purge_dups/purge_dups-1.2.6-foss-2023b.eb
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easyblock = 'PythonBundle' | ||
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name = 'purge_dups' | ||
version = '1.2.6' | ||
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homepage = 'https://github.com/dfguan/purge_dups' | ||
description = "purge haplotigs and overlaps in an assembly based on read depth" | ||
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toolchain = {'name': 'foss', 'version': '2023b'} | ||
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builddependencies = [ | ||
('pybind11', '2.11.1'), | ||
] | ||
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dependencies = [ | ||
('zlib', '1.2.13'), | ||
('bzip2', '1.0.8'), | ||
('Python', '3.11.5'), | ||
('matplotlib', '3.8.2'), | ||
('minimap2', '2.28'), | ||
] | ||
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use_pip = True | ||
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default_easyblock = 'MakeCp' | ||
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components = [ | ||
(name, version, { | ||
'source_urls': ['https://github.com/dfguan/purge_dups/archive'], | ||
'sources': [{'download_filename': 'v%(version)s.tar.gz', 'filename': SOURCE_TAR_GZ}], | ||
'checksums': ['75b20df834d28410858ccd4e2d65b6c70849f3cbe5fc05959f38bfc2d041c704'], | ||
'start_dir': 'purge_dups-%(version)s', | ||
'prebuildopts': "cd src && ", | ||
'buildopts': 'CC="$CC" CFLAGS="$CFLAGS"', | ||
'files_to_copy': ['bin', 'scripts'], | ||
}), | ||
('KMC', '20190629', { | ||
'source_urls': ['https://github.com/dfguan/KMC/archive'], | ||
'sources': [{'download_filename': 'c05a5f9.tar.gz', 'filename': SOURCE_TAR_GZ}], | ||
'patches': [{ | ||
'name': 'KMC_use_EB_pybind11_and_libs.patch', | ||
'sourcepath': 'KMC-c05a5f9fd94683248ebe04484a60f86792cf328f', | ||
}], | ||
'checksums': [ | ||
'7251941f4b1913bfdd68759d9292b419d95fe7c63815056e15ecb097a12a0bc4', | ||
'2f54971aae26787777d0e4b638a9682bd4bc22cbf3fda170c7baf4c610808ac9', | ||
], | ||
'prebuildopts': 'cd KMC-* && ', | ||
'buildopts': 'CC="$CXX"', | ||
'files_to_copy': [(['KMC-*/bin/*kmc*'], 'bin'), 'KMC-*/spectra.py'], | ||
}), | ||
] | ||
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exts_list = [ | ||
('runner', '20191220', { | ||
'preinstallopts': "sed -i 's/0.0.0/%(version)s/g' setup.py && ", | ||
'sources': [{ | ||
'git_config': { | ||
'url': 'https://github.com/dfguan/', | ||
'repo_name': 'runner', | ||
'commit': '73a4d11', | ||
}, | ||
'filename': 'runner-%(version)s.tar.gz', | ||
}], | ||
'checksums': [None], | ||
}), | ||
] | ||
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sanity_check_paths = { | ||
'files': ['bin/kmc', 'bin/purge_dups'], | ||
'dirs': ['scripts'], | ||
} | ||
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sanity_check_commands = [ | ||
"purge_dups -h 2>&1 | grep 'Program: purge_dups'", | ||
"kmc --help", | ||
"run_purge_dups.py -h", | ||
"hist_plot.py -h", | ||
] | ||
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sanity_pip_check = True | ||
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modextrapaths = {'PATH': 'scripts'} | ||
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moduleclass = 'bio' |