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diff --git a/ketcher-autotests/tests/Indigo-Tools/Calculate-CIP-Tool/calculate-cip-tool.spec.ts-snapshots/Indigo-Tools---Calculate-CIP-Tool-Layout-Undo-with-structure-that-contain-stereo-labels-1-chromium-linux.png b/ketcher-autotests/tests/Indigo-Tools/Calculate-CIP-Tool/calculate-cip-tool.spec.ts-snapshots/Indigo-Tools---Calculate-CIP-Tool-Layout-Undo-with-structure-that-contain-stereo-labels-1-chromium-linux.png
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diff --git a/ketcher-autotests/tests/Structure-Creating-&-Editing/Actions-With-Structures/Attachment-Point-Tool/attachment-point-tool.spec.ts-snapshots/Attachment-Point-Tool-Clean-Up-and-Layout-distorted-chain-with-attachment-points-1-chromium-linux.png b/ketcher-autotests/tests/Structure-Creating-&-Editing/Actions-With-Structures/Attachment-Point-Tool/attachment-point-tool.spec.ts-snapshots/Attachment-Point-Tool-Clean-Up-and-Layout-distorted-chain-with-attachment-points-1-chromium-linux.png
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index b5cdd56c79..0b6e1dc6ed 100644
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diff --git a/ketcher-autotests/tests/utils/files/readFile.ts b/ketcher-autotests/tests/utils/files/readFile.ts
index 4c53bcace1..27d3c07dea 100644
--- a/ketcher-autotests/tests/utils/files/readFile.ts
+++ b/ketcher-autotests/tests/utils/files/readFile.ts
@@ -84,8 +84,6 @@ export async function openFileAndAddToCanvas(
 export async function openFileAndAddToCanvasAsNewProject(
   filename: string,
   page: Page,
-  xOffsetFromCenter?: number,
-  yOffsetFromCenter?: number,
 ) {
   await selectTopPanelButton(TopPanelButton.Open, page);
   await openFile(filename, page);
@@ -95,15 +93,6 @@ export async function openFileAndAddToCanvasAsNewProject(
   await waitForLoad(page, async () => {
     await pressButton(page, 'Open as New Project');
   });
-
-  if (
-    typeof xOffsetFromCenter === 'number' &&
-    typeof yOffsetFromCenter === 'number'
-  ) {
-    await clickOnTheCanvas(page, xOffsetFromCenter, yOffsetFromCenter);
-  } else {
-    await clickInTheMiddleOfTheScreen(page);
-  }
 }
 
 export async function filteredFile(
diff --git a/packages/ketcher-core/src/application/editor/operations/CanvasLoad.ts b/packages/ketcher-core/src/application/editor/operations/CanvasLoad.ts
index d3eb4f688f..5c453cb06a 100644
--- a/packages/ketcher-core/src/application/editor/operations/CanvasLoad.ts
+++ b/packages/ketcher-core/src/application/editor/operations/CanvasLoad.ts
@@ -33,7 +33,7 @@ export class CanvasLoad extends BaseOperation {
     const oldStruct = restruct.molecule;
     restruct.clearVisels(); // TODO: What is it?
     if (this.data.struct) {
-      restruct.render.setMolecule(this.data.struct);
+      restruct.render.setMolecule(this.data.struct, true);
     }
 
     this.data.struct = oldStruct;
diff --git a/packages/ketcher-core/src/application/render/raphaelRender.ts b/packages/ketcher-core/src/application/render/raphaelRender.ts
index c41a05cddd..5aeec6d85a 100644
--- a/packages/ketcher-core/src/application/render/raphaelRender.ts
+++ b/packages/ketcher-core/src/application/render/raphaelRender.ts
@@ -191,11 +191,19 @@ export class Render {
     this.scrollbar.update();
   }
 
-  setMolecule(struct: Struct) {
+  setMolecule(struct: Struct, forceUpdateWithTimeout = false) {
     this.paper.clear();
     this.ctab = new ReStruct(struct, this);
     this.options.offset = new Vec2();
-    this.update(false);
+    // need to use force update with timeout to have ability select bonds in case of usage:
+    // addFragment, setMolecule or "Paste from clipboard" with "Open as New Project" button
+    if (forceUpdateWithTimeout) {
+      setTimeout(() => {
+        this.update(true);
+      }, 0);
+    } else {
+      this.update(false);
+    }
   }
 
   update(force = false, viewSz: Vec2 | null = null) {