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Unable to load variant phosphate from HELM - system throws an error: Convert error! {} #5710

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AlexeyGirin opened this issue Oct 3, 2024 · 1 comment · Fixed by #5716 or #5732
Closed

Unable to load variant phosphate from HELM - system throws an error: Convert error! {} #5710

AlexeyGirin opened this issue Oct 3, 2024 · 1 comment · Fixed by #5716 or #5732
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@rrodionov91
Labels
bug Flex mode Bucket: Flex canvas related mode HELM Bucket: Bugs related to Export to HELM format Priority: Medium
Milestone
Ketcher 2.26.0-rc.2

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@AlexeyGirin
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Steps to Reproduce

  1. Toggle to Macro - Flex
  2. Load using paste from clipboard way following HELM: RNA1{R(A)([bnn],[bP])}$$$$V2.0
    image

Actual behavior
System throws an error: Convert error! {}
image
and sugar, base and variant phosphate appears on the canvas with APs occupied but with no bonds wisible
image

Expected behavior
No exception. Preset appears on the canvas
image

Versions

  • Ketcher Version 2.25.0-rc.4 Build at 2024-09-23; 17:24:38
  • Indigo Toolkit Version 1.24.0-rc.3.0-g692080c62-wasm32-wasm-clang-19.0.0
  • Chrome Version 129.0.6668.59 (Official Build) (64-bit)
  • Win10

Reference issues: epam/Indigo#2188, #4554
@AlexeyGirin AlexeyGirin added bug Priority: Medium Flex mode Bucket: Flex canvas related mode HELM Bucket: Bugs related to Export to HELM format labels Oct 3, 2024
@AlexeyGirin AlexeyGirin transferred this issue from epam/Indigo Oct 10, 2024
@AlexeyGirin AlexeyGirin added this to the Ketcher 2.26.0-rc.2 milestone Oct 10, 2024
@rrodionov91 rrodionov91 linked a pull request Oct 10, 2024 that will close this issue
#5709 - Unable to load variant sugar from HELM - system throws an error: Convert error! {} #5716
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9 tasks
@rrodionov91 rrodionov91 self-assigned this Oct 10, 2024
@rrodionov91 rrodionov91 linked a pull request Oct 11, 2024 that will close this issue
Backmerge: #5709 - Unable to load variant sugar from HELM - system throws an error: Convert error! {} #5732
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9 tasks
@AlexeyGirin
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Verified.
image

  • Ketcher Version 2.26.0-rc.2 Build at 2024-10-14; 19:59:03
  • Indigo Toolkit Version 1.25.0-rc.2.0-g867ae250b-wasm32-wasm-clang-19.0.0
  • Chrome Version 129.0.6668.101 (Official Build) (64-bit)
  • Win10

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@rrodionov91 rrodionov91

Labels
bug Flex mode Bucket: Flex canvas related mode HELM Bucket: Bugs related to Export to HELM format Priority: Medium
Projects
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Milestone
Ketcher 2.26.0-rc.2
2 participants
@rrodionov91 @AlexeyGirin