diff --git a/CITATION.cff b/CITATION.cff index 210a0559..4f1f9e67 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -7,10 +7,16 @@ cff-version: 1.2.0 message: 'To cite package "sivirep" in publications use:' type: software license: MIT -title: 'sivirep: Data Wrangling and Automated Reports from ''SIVIGILA'' source' -version: 1.0.0 -abstract: Provides functions for data wrangling and automated reports from 'SIVIGILA' - source. +title: 'sivirep: Data Wrangling and Automated Reports from ''SIVIGILA'' Source' +version: 1.0.1 +doi: 10.32614/CRAN.package.sivirep +abstract: Data wrangling, pre-processing, and generating automated reports from Colombia's + epidemiological surveillance system, 'SIVIGILA' . + It provides a customizable R Markdown template for analysis and automatic generation + of epidemiological reports that can be adapted to local, regional, and national + contexts. This tool offers a standardized and reproducible workflow that helps to + reduce manual labor and potential errors in report generation, improving their efficiency + and consistency. authors: - family-names: Gómez-Millán given-names: Geraldine @@ -28,13 +34,14 @@ authors: given-names: Claudia email: chuguett@hotmail.com orcid: https://orcid.org/0000-0002-9814-2386 +repository: https://CRAN.R-project.org/package=sivirep repository-code: https://github.com/epiverse-trace/sivirep url: https://epiverse-trace.github.io/sivirep/ contact: -- family-names: Cucunubá - given-names: Zulma M. - email: zulma.cucunuba@javeriana.edu.co - orcid: https://orcid.org/0000-0002-8165-3198 +- family-names: Gómez-Millán + given-names: Geraldine + email: geralidine.gomez@javeriana.edu.co + orcid: https://orcid.org/0009-0007-8701-0568 keywords: - colombia - epidemiological-surveillance @@ -54,6 +61,7 @@ references: given-names: JJ email: jj@rstudio.com year: '2024' + doi: 10.32614/CRAN.package.config - type: software title: dplyr abstract: 'dplyr: A Grammar of Data Manipulation' @@ -78,6 +86,7 @@ references: email: davis@posit.co orcid: https://orcid.org/0000-0003-4777-038X year: '2024' + doi: 10.32614/CRAN.package.dplyr - type: software title: ggplot2 abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics' @@ -117,6 +126,7 @@ references: name-particle: van den orcid: https://orcid.org/0000-0002-9335-7468 year: '2024' + doi: 10.32614/CRAN.package.ggplot2 - type: software title: httr2 abstract: 'httr2: Perform HTTP Requests and Process the Responses' @@ -126,8 +136,9 @@ references: authors: - family-names: Wickham given-names: Hadley - email: hadley@rstudio.com + email: hadley@posit.co year: '2024' + doi: 10.32614/CRAN.package.httr2 - type: software title: stringr abstract: 'stringr: Simple, Consistent Wrappers for Common String Operations' @@ -139,6 +150,7 @@ references: given-names: Hadley email: hadley@posit.co year: '2024' + doi: 10.32614/CRAN.package.stringr - type: software title: xml2 abstract: 'xml2: Parse XML' @@ -154,6 +166,7 @@ references: - family-names: Ooms given-names: Jeroen year: '2024' + doi: 10.32614/CRAN.package.xml2 - type: software title: epitrix abstract: 'epitrix: Small Helpers and Tricks for Epidemics Analysis' @@ -171,6 +184,7 @@ references: given-names: Flavio email: flavio.finger@lshtm.ac.uk year: '2024' + doi: 10.32614/CRAN.package.epitrix - type: software title: sf abstract: 'sf: Simple Features for R' @@ -183,6 +197,7 @@ references: email: edzer.pebesma@uni-muenster.de orcid: https://orcid.org/0000-0001-8049-7069 year: '2024' + doi: 10.32614/CRAN.package.sf - type: software title: readxl abstract: 'readxl: Read Excel Files' @@ -199,6 +214,32 @@ references: email: jenny@posit.co orcid: https://orcid.org/0000-0002-6983-2759 year: '2024' + doi: 10.32614/CRAN.package.readxl +- type: software + title: rlang + abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features' + notes: Imports + url: https://rlang.r-lib.org + repository: https://CRAN.R-project.org/package=rlang + authors: + - family-names: Henry + given-names: Lionel + email: lionel@posit.co + - family-names: Wickham + given-names: Hadley + email: hadley@posit.co + year: '2024' + doi: 10.32614/CRAN.package.rlang +- type: software + title: tools + abstract: 'R: A Language and Environment for Statistical Computing' + notes: Imports + authors: + - name: R Core Team + institution: + name: R Foundation for Statistical Computing + address: Vienna, Austria + year: '2024' - type: software title: sysfonts abstract: 'sysfonts: Loading Fonts into R' @@ -211,6 +252,7 @@ references: - family-names: details. given-names: authors/contributors of the included fonts. See file AUTHORS for year: '2024' + doi: 10.32614/CRAN.package.sysfonts - type: software title: showtext abstract: 'showtext: Using Fonts More Easily in R Graphs' @@ -223,6 +265,7 @@ references: - family-names: details. given-names: authors/contributors of the included software. See file AUTHORS for year: '2024' + doi: 10.32614/CRAN.package.showtext - type: software title: kableExtra abstract: 'kableExtra: Construct Complex Table with ''kable'' and Pipe Syntax' @@ -235,6 +278,7 @@ references: email: haozhu233@gmail.com orcid: https://orcid.org/0000-0002-3386-6076 year: '2024' + doi: 10.32614/CRAN.package.kableExtra - type: software title: knitr abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R' @@ -247,6 +291,7 @@ references: email: xie@yihui.name orcid: https://orcid.org/0000-0003-0645-5666 year: '2024' + doi: 10.32614/CRAN.package.knitr - type: software title: rmarkdown abstract: 'rmarkdown: Dynamic Documents for R' @@ -290,6 +335,23 @@ references: email: rich@posit.co orcid: https://orcid.org/0000-0003-3925-190X year: '2024' + doi: 10.32614/CRAN.package.rmarkdown +- type: software + title: spelling + abstract: 'spelling: Tools for Spell Checking in R' + notes: Suggests + url: https://ropensci.r-universe.dev/spelling + repository: https://CRAN.R-project.org/package=spelling + authors: + - family-names: Ooms + given-names: Jeroen + email: jeroenooms@gmail.com + orcid: https://orcid.org/0000-0002-4035-0289 + - family-names: Hester + given-names: Jim + email: james.hester@rstudio.com + year: '2024' + doi: 10.32614/CRAN.package.spelling - type: software title: testthat abstract: 'testthat: Unit Testing for R' @@ -301,6 +363,7 @@ references: given-names: Hadley email: hadley@posit.co year: '2024' + doi: 10.32614/CRAN.package.testthat version: '>= 3.0.0' - type: software title: 'R: A Language and Environment for Statistical Computing' @@ -312,5 +375,5 @@ references: name: R Foundation for Statistical Computing address: Vienna, Austria year: '2024' - version: '>= 3.5.0' + version: '>= 4.0.0'