diff --git a/docs/datastructure.rst b/docs/datastructure.rst index cb7ad6626..6d87e3b33 100644 --- a/docs/datastructure.rst +++ b/docs/datastructure.rst @@ -216,6 +216,8 @@ Meta export datastructure .. autopydantic_model:: fmu.dataio.datastructure.meta.specification.TableSpecification :model-show-json: false -.. autopydantic_model:: fmu.dataio.datastructure.meta.specification.WellPointsDictionaryCaseSpecification +.. autopydantic_model:: fmu.dataio.datastructure.meta.specification.FaultRoomSurfaceSpecification :model-show-json: false +.. autopydantic_model:: fmu.dataio.datastructure.meta.specification.WellPointsDictionaryCaseSpecification + :model-show-json: false diff --git a/schema/definitions/0.8.0/examples/surface_faultroom_data.yml b/schema/definitions/0.8.0/examples/surface_faultroom_data.yml new file mode 100644 index 000000000..7eec0feda --- /dev/null +++ b/schema/definitions/0.8.0/examples/surface_faultroom_data.yml @@ -0,0 +1,169 @@ +# Example metadata for a depth surface. + +$schema: https://main-fmu-schemas-dev.radix.equinor.com/schemas/0.8.0/fmu_results.json +version: "0.8.0" # including for REP and others to build logic on. +source: fmu # always included, and always this value if FMU made it. For quick identification for external consumers. + +tracklog: + - datetime: 2020-10-28T14:28:02 + user: + id: jriv + event: created + sysinfo: + fmu-dataio: + version: 1.2.3 + komodo: # only added when running in Komodo environment + version: 2023.12.05-py38 + - datetime: 2020-10-28T14:46:14 + user: + id: peesv + event: updated + +class: surface # the geojson from fault-room represents a surface (triangulated) + +fmu: # the fmu-block contains information directly related to the FMU context + model: + name: ff + revision: 21.0.0.dev + description: + - detailed description + - optional + + workflow: + reference: rms/structural_model + + case: + name: MyCaseName + uuid: 8bb56d60-8758-481a-89a4-6bac8561d38e + user: + id: jriv # $USER from ERT + description: + - yet other detailed description + - optional + + iteration: + id: 0 # always an int, will be 0 for e.g. "pred" + uuid: 4b939310-34b1-4179-802c-49460bc0f799 # hash of case.uuid + iteration.id + name: "iter-0" # /"pred" + restart_from: 15ce3b84-766f-4c93-9050-b154861f9100 # fmu.iteration.uuid for another iteration + + realization: + id: 33 + uuid: 29a15b21-ce13-471b-9a4a-0f791552aa51 + name: "realization-33" + parameters: # directly pass parameters.txt. This is potentially a lot of content, only a stub is included here. + SENSNAME: faultseal + SENSCASE: low + RMS_SEED: 1006 + INIT_FILES: + PERM_FLUVCHAN_E1_NORM: 0.748433 + PERM_FLUVCHAN_E21_NORM: 0.782068 + KVKH_CHANNEL: 0.6 + KVKH_US: 0.6 + FAULT_SEAL_SCALING: 0.1 + FWL_CENTRAL: 1677 + + context: + stage: realization + +file: + # the Faultroom polygons are some kind of triangulated surfaces + relative_path: realization-33/iter-0/share/results/maps/topvolantis_faults.geojson # case-relative + absolute_path: /some/absolute/path/realization-33/iter-0/share/results/maps/topvolantis_faults.geojson # case-relative + checksum_md5: kjhsdfvsdlfk23knerknvk23 # checksum of the file, not the data. + size_bytes: 132321 + +data: # The data block describes the actual data (e.g. surface). Only present in data objects + + content: depth # white-listed and standardized + + # if stratigraphic, name must match the strat column. This is the official name of this surface. + name: volantis_top-volantis_base + stratigraphic: false # if true, this is a stratigraphic surface found in the strat column + offset: 0.0 # to be used if a specific horizon is represented with an offset. + + stratigraphic_alias: # other stratigraphic entities this corresponds to in the strat column, e.g. Top Viking vs Top Draupne. Ref issue. + - SomeName Fm. 1 Top + alias: # other known-as names, such as name used inside RMS etc + - somename_fm_1_top + - top_somename + + # tagname is flexible. The tag is intended primarily for providing uniqueness. The tagname will also be part of the outgoing file name on disk. + tagname: ds_extract_geogrid + + # no content-specific attribute for "depth" but can come in the future + + properties: # what the values actually show. List, only one for IRAP Binary surfaces. Multiple for 3d grid or multi-parameter surfaces. First is geometry. + - name: PropertyName + attribute: owc + is_discrete: false # to be used for discrete values in surfaces. + calculation: null # max/min/rms/var/maxpos/sum/etc + + format: geojson + layout: triangulated # / cornerpoint / structured / etc + unit: m + vertical_domain: depth # / time / null + depth_reference: msl # / seabed / etc + grid_model: # Making this an object to allow for expanding in the future + name: MyGrid # important for data identification, also important for other data types + spec: # class/layout dependent, optional? Can spec be expanded to work for all data types? + num_triangles: 2819 + bbox: + xmin: 456012.5003497944 + xmax: 467540.52762886323 + ymin: 5926499.999511719 + ymax: 5939492.128326312 + zmin: 1244.039 + zmax: 2302.683 + is_prediction: true # A mechanism for separating pure QC output from actual predictions + is_observation: true # Used for 4D data currently but also valid for other data? + undef_is_zero: false # Used to flag if undef should be considered 0.0 in statistics + description: + - Fault surfaces made from the FaultRoom plugin + +display: + name: Top Volantis + subtitle: Some subtitle + line: + show: true + color: black + style: solid + points: + show: false + color: null + contours: + show: true + color: black + increment: 20 + fill: + show: true + color: black # color and colormap are mutually exclusive in practice, so clients must choose. + colormap: gist_earth + display_min: 1221.3 + display_max: 1900.0 + +access: + asset: + name: Drogon + ssdl: + access_level: internal + rep_include: true + classification: internal + +masterdata: + smda: + country: + - identifier: Norway + uuid: ad214d85-8a1d-19da-e053-c918a4889309 + discovery: + - short_identifier: DROGON + uuid: 00000000-0000-0000-0000-000000000000 # mock uuid for Drogon + field: + - identifier: DROGON + uuid: 00000000-0000-0000-0000-000000000000 # mock uuid for Drogon + coordinate_system: + identifier: ST_WGS84_UTM37N_P32637 + uuid: ad214d85-dac7-19da-e053-c918a4889309 + stratigraphic_column: + identifier: DROGON_2020 + uuid: 00000000-0000-0000-0000-000000000000 # mock uuid for Drogon diff --git a/schema/definitions/0.8.0/schema/fmu_meta.json b/schema/definitions/0.8.0/schema/fmu_meta.json index f42074696..410a8975d 100644 --- a/schema/definitions/0.8.0/schema/fmu_meta.json +++ b/schema/definitions/0.8.0/schema/fmu_meta.json @@ -684,6 +684,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -1295,6 +1298,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -1551,6 +1557,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -1687,6 +1696,59 @@ "title": "FaultLinesContent", "type": "object" }, + "FaultRoomSurfaceSpecification": { + "properties": { + "faults": { + "description": "Names of faults", + "items": { + "type": "string" + }, + "title": "Faults", + "type": "array" + }, + "horizons": { + "description": "List of horizon names", + "items": { + "type": "string" + }, + "title": "Horizons", + "type": "array" + }, + "juxtaposition_fw": { + "description": "List of zones included in footwall juxtaposition", + "items": { + "type": "string" + }, + "title": "Juxtaposition Fw", + "type": "array" + }, + "juxtaposition_hw": { + "description": "List of zones included in hangingwall juxtaposition", + "items": { + "type": "string" + }, + "title": "Juxtaposition Hw", + "type": "array" + }, + "properties": { + "description": "List of properties along fault plane", + "items": { + "type": "string" + }, + "title": "Properties", + "type": "array" + } + }, + "required": [ + "horizons", + "faults", + "juxtaposition_hw", + "juxtaposition_fw", + "properties" + ], + "title": "FaultRoomSurfaceSpecification", + "type": "object" + }, "FieldItem": { "properties": { "identifier": { @@ -1849,6 +1911,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -2124,6 +2189,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -2471,6 +2539,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -2744,6 +2815,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -3049,6 +3123,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -3333,6 +3410,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -3601,6 +3681,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -3877,6 +3960,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -4133,6 +4219,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -4437,6 +4526,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -4693,6 +4785,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -5212,6 +5307,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -5468,6 +5566,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -5815,6 +5916,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -6182,6 +6286,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -6615,6 +6722,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -6899,6 +7009,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -7155,6 +7268,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -7469,6 +7585,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -7738,6 +7857,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -7994,6 +8116,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, @@ -8250,6 +8375,9 @@ { "$ref": "#/$defs/CPGridSpecification" }, + { + "$ref": "#/$defs/FaultRoomSurfaceSpecification" + }, { "$ref": "#/$defs/PointSpecification" }, diff --git a/src/fmu/dataio/_filedata_provider.py b/src/fmu/dataio/_filedata_provider.py index feb38cb69..4307bb405 100644 --- a/src/fmu/dataio/_filedata_provider.py +++ b/src/fmu/dataio/_filedata_provider.py @@ -52,7 +52,7 @@ def __post_init__(self) -> None: if self.dataio.name: self.name = self.dataio.name else: - self.name = self.objdata.name + self.name = self.objdata.file_name_stem self.tagname = self.dataio.tagname self.time0 = self.objdata.time0 diff --git a/src/fmu/dataio/_metadata.py b/src/fmu/dataio/_metadata.py index 3083eccee..2160c8074 100644 --- a/src/fmu/dataio/_metadata.py +++ b/src/fmu/dataio/_metadata.py @@ -400,7 +400,7 @@ def _populate_meta_display(self) -> None: display_name = self.dataio.display_name else: assert self.objdata is not None - display_name = self.objdata.name + display_name = self.objdata.display_name self.meta_display = {"name": display_name} diff --git a/src/fmu/dataio/_objectdata_provider.py b/src/fmu/dataio/_objectdata_provider.py index 0b4d33130..a2d9020e0 100644 --- a/src/fmu/dataio/_objectdata_provider.py +++ b/src/fmu/dataio/_objectdata_provider.py @@ -99,6 +99,7 @@ from . import dataio, types from ._definitions import STANDARD_TABLE_INDEX_COLUMNS, ConfigurationError, ValidFormats from ._logging import null_logger +from ._special_obj import FaultRoomSurface from ._utils import generate_description, parse_timedata from .datastructure._internal.content import AllowedContent from .datastructure.meta import meta, specification @@ -146,6 +147,7 @@ class DerivedObjectDescriptor: "cornerpoint", "table", "dictionary", + "faultroom_triangulated", ] efolder: ( Literal[ @@ -220,6 +222,40 @@ def derive_name( return "" +def derive_display_name( + export: dataio.ExportData, + obj: types.Inferrable, +) -> str: + """ + Derives and returns a display name for an export operation based on the + provided ExportData instance and a 'sniffable' object. + """ + if name := export.display_name: + return name + + for name_proposal in ("display_name", "name"): + if hasattr(obj, name_proposal): + return getattr(obj, name_proposal) + return "" + + +def derive_file_name_stem( + export: dataio.ExportData, + obj: types.Inferrable, +) -> str: + """ + Derives and returns a file name stem for an export operation based on the + provided ExportData instance and a 'sniffable' object. + """ + if name := export.name: + return name + + for name_proposal in ("file_name_stem", "name"): + if hasattr(obj, name_proposal): + return getattr(obj, name_proposal) + return "" + + @dataclass class ObjectDataProvider: """Class for providing metadata for data objects in fmu-dataio, e.g. a surface. @@ -248,6 +284,8 @@ class ObjectDataProvider: layout: str = field(default="") metadata: dict = field(default_factory=dict) name: str = field(default="") + display_name: str = field(default="") + file_name_stem: str = field(default="") specs: dict = field(default_factory=dict) subtype: str = field(default="") time0: str = field(default="") @@ -263,7 +301,6 @@ def _derive_name_stratigraphy(self) -> DerivedNamedStratigraphy: name is "Valysar Top Fm." that latter name will be used. """ name = derive_name(self.dataio, self.obj) - # next check if usename has a "truename" and/or aliases from the config strat = self.dataio.config.get("stratigraphy", {}) no_start_or_missing_name = strat is None or name not in strat @@ -409,6 +446,21 @@ def _derive_objectdata(self) -> DerivedObjectDescriptor: bbox=bbox, table_index=self._derive_index(), ) + elif isinstance(self.obj, FaultRoomSurface): + spec, bbox = self._derive_spec_bbox_faultroom() + dod = DerivedObjectDescriptor( + subtype="JSON", + classname="surface", + layout="faultroom_triangulated", # proprietary format + efolder="maps", + fmt=(fmt := self.dataio.dict_fformat), + extension=self._validate_get_ext( + fmt, "JSON", ValidFormats().dictionary + ), + spec=spec, + bbox=bbox, + table_index=None, + ) elif isinstance(self.obj, dict): spec, bbox = self._derive_spec_bbox_dict() @@ -425,7 +477,6 @@ def _derive_objectdata(self) -> DerivedObjectDescriptor: bbox=bbox, table_index=None, ) - else: from pyarrow import Table @@ -692,6 +743,37 @@ def _derive_spec_bbox_arrowtable( bbox={}, ) + def _derive_spec_bbox_faultroom(self) -> SpecificationAndBoundingBox: + """Process/collect the data.spec and data.bbox faultroom maps.""" + logger.info("Derive bbox and specs for FaultRoom special triangle maps") + assert isinstance(self.obj, FaultRoomSurface) # for mypy + faultsurf = self.obj + + return SpecificationAndBoundingBox( + spec=specification.FaultRoomSurfaceSpecification( + horizons=faultsurf.horizons, + faults=faultsurf.faults, + juxtaposition_hw=faultsurf.juxtaposition_hw, + juxtaposition_fw=faultsurf.juxtaposition_fw, + properties=faultsurf.properties, + name=faultsurf.name, + ).model_dump( + mode="json", + exclude_none=True, + ), + bbox=meta.content.BoundingBox( + xmin=float(faultsurf.bbox["xmin"]), + xmax=float(faultsurf.bbox["xmin"]), + ymin=float(faultsurf.bbox["ymin"]), + ymax=float(faultsurf.bbox["ymax"]), + zmin=float(faultsurf.bbox["zmin"]), + zmax=float(faultsurf.bbox["zmax"]), + ).model_dump( + mode="json", + exclude_none=True, + ), + ) + def _derive_spec_bbox_dict(self) -> SpecificationAndBoundingBox: """Process/collect the data items for dictionary.""" logger.info("Process data metadata for dictionary") @@ -909,7 +991,12 @@ def derive_metadata(self) -> None: # the self.metadata fields: self.name = meta["name"] + self.display_name = derive_display_name(self.dataio, self.obj) + self.file_name_stem = derive_file_name_stem(self.dataio, self.obj) + logger.info("The objectdata name is %s", self.name) + logger.info("The objectdata display_name is %s", self.display_name) + logger.info("The objectdata file_name_stem is %s", self.file_name_stem) # then there are a few settings that are not in the ``data`` metadata, but # needed as data/variables in other classes: diff --git a/src/fmu/dataio/_special_obj.py b/src/fmu/dataio/_special_obj.py new file mode 100644 index 000000000..7f65d1006 --- /dev/null +++ b/src/fmu/dataio/_special_obj.py @@ -0,0 +1,100 @@ +"""Module for special object types for dataio.""" + +from __future__ import annotations + +import hashlib +from dataclasses import dataclass, field +from typing import Final + +from ._logging import null_logger + +logger: Final = null_logger(__name__) + + +@dataclass +class FaultRoomSurface: + """Parse the requested props from FaultRoom plugin output format.""" + + storage: dict + + horizons: list = field(default_factory=list, init=False) + faults: list = field(default_factory=list, init=False) + juxtaposition_fw: list = field(default_factory=list, init=False) + juxtaposition_hw: list = field(default_factory=list, init=False) + properties: list = field(default_factory=list, init=False) + bbox: dict = field(default_factory=dict, init=False) + name: str = field(default="faultroom", init=False) + display_name: str = field(default="", init=False) + file_name_stem: str = field(default="", init=False) + + def __post_init__(self) -> None: + self._get_horizons() + self._get_faults() + self._get_juxtaposition() + self._get_properties() + self._get_bbox() + self._derive_names() + + def _get_horizons(self) -> None: + self.horizons = self.storage["metadata"].get("horizons") + + def _get_faults(self) -> None: + self.faults = self.storage["metadata"]["faults"].get("default") + + def _get_juxtaposition(self) -> None: + self.juxtaposition_fw = self.storage["metadata"]["juxtaposition"].get("fw") + self.juxtaposition_hw = self.storage["metadata"]["juxtaposition"].get("hw") + + def _get_properties(self) -> None: + self.properties = self.storage["metadata"].get("properties") + + def _get_bbox(self) -> None: + """To get the bounding box, need to scan data.""" + xmin = ymin = zmin = 1e32 + xmax = ymax = zmax = -1e32 + for feature in self.storage["features"]: + for triangle in feature["geometry"]["coordinates"]: + for coords in triangle: + xcoord, ycoord, zcoord = coords + xmin = xcoord if xcoord < xmin else xmin + ymin = ycoord if ycoord < ymin else ymin + zmin = zcoord if zcoord < zmin else zmin + xmax = xcoord if xcoord > xmax else xmax + ymax = ycoord if ycoord > ymax else ymax + zmax = zcoord if zcoord > zmax else zmax + + self.bbox = { + "xmin": xmin, + "xmax": xmax, + "ymin": ymin, + "ymax": ymax, + "zmin": zmin, + "zmax": zmax, + } + + def _derive_names(self) -> None: + """A descriptive set of names based on metadata for faultroom data. + + The name also includes as short ID based on hash, since there may possible ways + to make a horizon with multiple juxtapositions. + """ + + self.name = "_".join(self.horizons) + + file_name = "faultroom_" + "_".join(self.horizons).lower() + hash_input = ( + file_name + + "_".join(self.juxtaposition_fw) + + "_".join(self.juxtaposition_hw) + ) + short_hash = hashlib.sha1(hash_input.encode("utf-8")).hexdigest()[:7] + self.file_name_stem = file_name + "_" + short_hash + + # display name + self.display_name = ( + "_".join(self.horizons) + + "--FW_" + + "_".join(self.juxtaposition_fw) + + "--HW_" + + "_".join(self.juxtaposition_hw) + ) diff --git a/src/fmu/dataio/_utils.py b/src/fmu/dataio/_utils.py index c81daab8f..3a8daa665 100644 --- a/src/fmu/dataio/_utils.py +++ b/src/fmu/dataio/_utils.py @@ -22,6 +22,7 @@ from . import _design_kw, types from ._logging import null_logger +from ._special_obj import FaultRoomSurface logger: Final = null_logger(__name__) @@ -153,6 +154,9 @@ def export_file( # Types in pyarrow-stubs package are wrong for the write_feather(...). # https://arrow.apache.org/docs/python/generated/pyarrow.feather.write_feather.html#pyarrow.feather.write_feather feather.write_feather(obj, dest=str(filename)) # type: ignore + elif filename.suffix == ".json" and isinstance(obj, FaultRoomSurface): + with open(filename, "w") as stream: + json.dump(obj.storage, stream, indent=4) elif filename.suffix == ".json": with open(filename, "w") as stream: json.dump(obj, stream) diff --git a/src/fmu/dataio/dataio.py b/src/fmu/dataio/dataio.py index 1473daaeb..e3a20fb9d 100644 --- a/src/fmu/dataio/dataio.py +++ b/src/fmu/dataio/dataio.py @@ -5,6 +5,7 @@ from __future__ import annotations +import json import os import uuid import warnings @@ -23,6 +24,7 @@ ValidationError, ) from ._logging import null_logger +from ._special_obj import FaultRoomSurface from ._utils import ( create_symlink, detect_inside_rms, # dataio_examples, @@ -460,6 +462,9 @@ class ExportData: # << NB! storing ACTUAL casepath: _rootpath: Path = field(default_factory=Path, init=False) + # in some cases input object may change class; store the internal variable here: + _object: types.Inferrable = field(init=False) + def __post_init__(self) -> None: if self.verbosity != "DEPRECATED": warn( @@ -631,6 +636,38 @@ def _establish_pwd_rootpath(self) -> None: logger.info("pwd: %s", str(self._pwd)) logger.info("rootpath: %s", str(self._rootpath)) + @staticmethod + def _check_obj_is_faultroom(obj: types.Inferrable) -> types.Inferrable: + """Faultroom surface data are (geo)JSON file or dicts; needs separate handling. + + Faultroom data are quite propriatary data and is not supported by e.g. xtgeo + currently. Hence it is read locally. As input, both a dict and a file with + extension .json og .geojson can be applied + """ + + def _load_faultroom(myobj: dict) -> FaultRoomSurface | None: + if ( + "metadata" in myobj + and "source" in myobj["metadata"] + and "FaultRoom" in myobj["metadata"]["source"] + ): + return FaultRoomSurface(myobj) + return None + + if isinstance(obj, (str, Path)) and "json" in Path(obj).suffix.lower(): + # try read the (geo)json file + with open(obj, "r", encoding="utf-8") as stream: + dict_obj = json.load(stream) + + if faultroom_obj := _load_faultroom(dict_obj): + return faultroom_obj + + elif isinstance(obj, dict): + if faultroom_obj := _load_faultroom(obj): + return faultroom_obj + + return obj + def _check_obj_if_file(self, obj: types.Inferrable) -> types.Inferrable: """When obj is file-like, it must be checked + assume preprocessed. @@ -711,7 +748,10 @@ def generate_metadata( # TODO: This needs refinement: _config_is_valid should be removed self.config = global_configuration.roundtrip(self.config) + obj = self._check_obj_is_faultroom(obj) obj = self._check_obj_if_file(obj) + self._object = obj + self._establish_pwd_rootpath() self._validate_content_key() self._update_fmt_flag() @@ -754,21 +794,22 @@ def export( self.table_index = kwargs.get("table_index", self.table_index) self.generate_metadata(obj, compute_md5=False, **kwargs) metadata = self._metadata + logger.info("Object type is: %s", type(self._object)) # from generate_metadata outfile = Path(metadata["file"]["absolute_path"]) metafile = outfile.parent / ("." + str(outfile.name) + ".yml") useflag = ( self.table_include_index - if isinstance(obj, pd.DataFrame) + if isinstance(self._object, pd.DataFrame) else self._usefmtflag ) - obj = self._check_obj_if_file(obj) logger.info("Export to file and compute MD5 sum, using flag: <%s>", useflag) + # inject md5 checksum in metadata metadata["file"]["checksum_md5"] = export_file_compute_checksum_md5( - obj, + self._object, outfile, flag=useflag, # type: ignore # BUG(?): Looks buggy, if flag is bool export_file will blow up. diff --git a/src/fmu/dataio/datastructure/_internal/content.py b/src/fmu/dataio/datastructure/_internal/content.py index 3793646f1..e9aa2ba85 100644 --- a/src/fmu/dataio/datastructure/_internal/content.py +++ b/src/fmu/dataio/datastructure/_internal/content.py @@ -99,6 +99,7 @@ class AllowedContent(BaseModel): pinchout: None = Field(default=None) subcrop: None = Field(default=None) fault_lines: None = Field(default=None) + fault_properties: None = Field(default=None) velocity: None = Field(default=None) volumes: None = Field(default=None) khproduct: None = Field(default=None) diff --git a/src/fmu/dataio/datastructure/meta/content.py b/src/fmu/dataio/datastructure/meta/content.py index 4a0a65372..675814a1e 100644 --- a/src/fmu/dataio/datastructure/meta/content.py +++ b/src/fmu/dataio/datastructure/meta/content.py @@ -222,6 +222,10 @@ class FaultLinesContent(Content): content: Literal[enums.ContentEnum.fault_lines] +class FaultPropertiesContent(Content): + content: Literal[enums.ContentEnum.fault_properties] + + class FieldOutlineContent(Content): content: Literal[enums.ContentEnum.field_outline] field_outline: FieldOutline = Field( diff --git a/src/fmu/dataio/datastructure/meta/enums.py b/src/fmu/dataio/datastructure/meta/enums.py index 0e2c1f1d6..522fcde9e 100644 --- a/src/fmu/dataio/datastructure/meta/enums.py +++ b/src/fmu/dataio/datastructure/meta/enums.py @@ -7,6 +7,7 @@ class ContentEnum(str, Enum): depth = "depth" facies_thickness = "facies_thickness" fault_lines = "fault_lines" + fault_properties = "fault_properties" field_outline = "field_outline" field_region = "field_region" fluid_contact = "fluid_contact" diff --git a/src/fmu/dataio/datastructure/meta/specification.py b/src/fmu/dataio/datastructure/meta/specification.py index 8723a632e..627d5c30c 100644 --- a/src/fmu/dataio/datastructure/meta/specification.py +++ b/src/fmu/dataio/datastructure/meta/specification.py @@ -112,6 +112,27 @@ class PolygonsSpecification(BaseModel): ) +class FaultRoomSurfaceSpecification(BaseModel): + horizons: List[str] = Field( + description="List of horizon names", + ) + faults: List[str] = Field( + description="Names of faults", + ) + juxtaposition_hw: List[str] = Field( + description="List of zones included in hangingwall juxtaposition", + ) + juxtaposition_fw: List[str] = Field( + description="List of zones included in footwall juxtaposition", + ) + properties: List[str] = Field( + description="List of properties along fault plane", + ) + name: str = Field( + description="A name id of the faultroom usage", + ) + + class CubeSpecification(SurfaceSpecification): nlay: int = Field( description="The number of layers", @@ -167,6 +188,7 @@ class WellPointsDictionaryCaseSpecification(BaseModel): ... AnySpecification = Union[ CPGridPropertySpecification, CPGridSpecification, + FaultRoomSurfaceSpecification, PointSpecification, CubeSpecification, PolygonsSpecification, diff --git a/src/fmu/dataio/types.py b/src/fmu/dataio/types.py index c081c4e04..6cb225486 100644 --- a/src/fmu/dataio/types.py +++ b/src/fmu/dataio/types.py @@ -5,6 +5,8 @@ from typing_extensions import Annotated, TypeAlias +from ._special_obj import FaultRoomSurface + if TYPE_CHECKING: from pandas import DataFrame from pyarrow import Table @@ -39,6 +41,7 @@ class PolygonsProxy(Polygons): ... RegularSurfaceProxy, # Others DataFrame, + FaultRoomSurface, MutableMapping, Table, pathlib.Path, diff --git a/tests/data/drogon/rms/output/faultroom/README.txt b/tests/data/drogon/rms/output/faultroom/README.txt new file mode 100644 index 000000000..60df7425a --- /dev/null +++ b/tests/data/drogon/rms/output/faultroom/README.txt @@ -0,0 +1 @@ +Formats from faultroom; triangualed polygons on geojson format. diff --git a/tests/data/drogon/rms/output/faultroom/ex_faultroom_1.3.1.json b/tests/data/drogon/rms/output/faultroom/ex_faultroom_1.3.1.json new file mode 100644 index 000000000..c420e7d1c --- /dev/null +++ b/tests/data/drogon/rms/output/faultroom/ex_faultroom_1.3.1.json @@ -0,0 +1,19206 @@ +{ + "metadata": { + "source": "FaultRoom v.1.3.1", + "date_created": "2024-03-01", + "horizons": [ + "TopVolantis" + ], + "faults": { + "default": [ + "F1", + "F2", + "F3", + "F4", + "F5", + "F6" + ] + }, + "juxtaposition": { + "fw": [ + "Therys", + "Valysar", + "Volon" + ], + "hw": [ + "Therys", 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1669.251 + ], + [ + 462560.739, + 5932703.371, + 1621.432 + ] + ] + ] + } + } + ] +} \ No newline at end of file diff --git a/tests/test_units/test_filedataprovider_class.py b/tests/test_units/test_filedataprovider_class.py index 854bb4ffd..e2c1e9603 100644 --- a/tests/test_units/test_filedataprovider_class.py +++ b/tests/test_units/test_filedataprovider_class.py @@ -103,7 +103,7 @@ def test_get_filestem( ): """Testing the private _get_filestem method.""" objdata = ObjectDataProvider(regsurf, edataobj1) - objdata.name = name + objdata.file_name_stem = name # time0 is always the oldest objdata.time0 = time0 objdata.time1 = time1 @@ -219,7 +219,7 @@ def test_filedata_provider(regsurf, edataobj1, tmp_path): cfg.name = "" objdata = ObjectDataProvider(regsurf, edataobj1) - objdata.name = "name" + objdata.name = objdata.file_name_stem = "name" objdata.efolder = "efolder" objdata.extension = ".ext" objdata.time0 = "t1" diff --git a/tests/test_units/test_metadata_class.py b/tests/test_units/test_metadata_class.py index 066155095..297603b8d 100644 --- a/tests/test_units/test_metadata_class.py +++ b/tests/test_units/test_metadata_class.py @@ -384,7 +384,7 @@ def test_metadata_display_name_not_given(regsurf, edataobj2): mymeta._populate_meta_display() assert "name" in mymeta.meta_display - assert mymeta.meta_display["name"] == mymeta.objdata.name + assert mymeta.meta_display["name"] == mymeta.objdata.display_name def test_metadata_display_name_given(regsurf, edataobj2): diff --git a/tests/test_units/test_rms_context.py b/tests/test_units/test_rms_context.py index 978ca1a5f..6529a2e1a 100644 --- a/tests/test_units/test_rms_context.py +++ b/tests/test_units/test_rms_context.py @@ -4,8 +4,11 @@ interactive or from ERT. Hence the rootpath will be ../../ """ +import json import logging import os +import shutil +from pathlib import Path import fmu.dataio.dataio as dataio import pandas as pd @@ -608,3 +611,69 @@ def test_pyarrow_export_file_set_name(rmssetup, rmsglobalconfig, arrowtable): metaout = dataio.read_metadata(output) assert metaout["data"]["spec"]["columns"] == ["COL1", "COL2"] + + +# ====================================================================================== +# Faultroom data, for e.g. DynaGEO usage +# ====================================================================================== + + +@inside_rms +def test_faultroom_export_as_instance(rootpath, rmssetup, rmsglobalconfig): + """Export the faultroom surfaces, which are on a special GeoJSON format""" + + # it assumes here that the faultroom plugin output file(s) to e.g. + # ../output/faultroom, but here need some preps for this test + f_room_files = (rootpath / "tests/data/drogon/rms/output/faultroom").glob("*.json") + target_folder = rmssetup / ".." / "output" / "faultroom" + target_folder.mkdir(parents=True) + for file_ in f_room_files: + shutil.copy(file_, target_folder) + + logger.info("Active folder is %s", rmssetup) + os.chdir(rmssetup) + + edata = dataio.ExportData( + config=rmsglobalconfig, content="fault_properties" + ) # read from global config + + # in RMS, the Faultroom plugin will export the results to a temporary folder, then + # fmu-dataio will grab that, parse metadata and output to the 'right place' + faultroom_files = Path("../output/faultroom").glob("*.json") + + for faultroom_file in faultroom_files: + print(f"Working with {faultroom_file}") + with open(faultroom_file, "r", encoding="utf-8") as stream: + faultroom_data = json.load(stream) + + output = edata.export(faultroom_data) + logger.info("Output is %s", output) + + +@inside_rms +def test_faultroom_export_as_file(rootpath, rmssetup, rmsglobalconfig): + """Export the faultroom surfaces, use input as file""" + + # it assumes here that the faultroom plugin output file(s) to e.g. + # ../output/faultroom, but here need some preps for this test + f_room_files = (rootpath / "tests/data/drogon/rms/output/faultroom").glob("*.json") + target_folder = rmssetup / ".." / "output" / "faultroom" + target_folder.mkdir(parents=True, exist_ok=True) + for file_ in f_room_files: + shutil.copy(file_, target_folder) + + logger.info("Active folder is %s", rmssetup) + os.chdir(rmssetup) + + edata = dataio.ExportData( + config=rmsglobalconfig, content="fault_properties" + ) # read from global config + + # in RMS, the Faultroom plugin will export the results to a temporary folder, then + # fmu-dataio will grab that, parse metadata and output to the 'right place' + faultroom_files = Path("../output/faultroom").glob("*.json") + + for faultroom_file in faultroom_files: + print(f"Working with {faultroom_file}") + output = edata.export(faultroom_file) + logger.info("Output is %s", output) diff --git a/tests/test_units/test_special_obj.py b/tests/test_units/test_special_obj.py new file mode 100644 index 000000000..e555390ac --- /dev/null +++ b/tests/test_units/test_special_obj.py @@ -0,0 +1,37 @@ +"""Test the utils module""" + +import json + +import pytest +from fmu.dataio import _special_obj as special + + +def test_faultroomsurface_class(rootpath): + """Test the class that reads the special in-house faultroom surface.""" + + with open( + rootpath / "tests/data/drogon/rms/output/faultroom/ex_faultroom_1.3.1.json", + "r", + encoding="utf-8", + ) as stream: + data = json.load(stream) + + instance = special.FaultRoomSurface(data) + + assert instance.faults == ["F1", "F2", "F3", "F4", "F5", "F6"] + assert instance.juxtaposition_fw == ["Therys", "Valysar", "Volon"] + assert instance.juxtaposition_hw == ["Therys", "Valysar", "Volon"] + assert instance.properties == [ + "Juxtaposition", + "displacement_avg", + "permeability_avg", + "transmissibility_avg", + ] + assert instance.bbox["xmin"] == pytest.approx(459495.34) + assert instance.bbox["xmax"] == pytest.approx(465799.178) + assert instance.bbox["ymin"] == pytest.approx(5930019.302) + assert instance.bbox["ymax"] == pytest.approx(5937680.563) + assert instance.bbox["zmin"] == pytest.approx(1556.379) + assert instance.bbox["zmax"] == pytest.approx(1831.14) + + assert instance.file_name_stem[:21] == "faultroom_topvolantis"