02:26:13 | DEBUG | Creating docker image with ersilia incorporated 02:26:13 | DEBUG | Creating docker image of ersilia base --2023-08-16 02:26:13-- https://raw.githubusercontent.com/ersilia-os/ersilia/master/dockerfiles/model-deploy/base/Dockerfile Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.109.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 906 [text/plain] Saving to: ‘Dockerfile’ Dockerfile 100%[=================================================>] 906 --.-KB/s in 0s 2023-08-16 02:26:14 (44.1 MB/s) - ‘Dockerfile’ saved [906/906] --2023-08-16 02:26:14-- https://raw.githubusercontent.com/ersilia-os/ersilia/master/dockerfiles/model-deploy/base/docker-entrypoint.sh Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.109.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 189 [text/plain] Saving to: ‘docker-entrypoint.sh’ docker-entrypoint.sh 100%[=================================================>] 189 --.-KB/s in 0s 2023-08-16 02:26:15 (4.60 MB/s) - ‘docker-entrypoint.sh’ saved [189/189] --2023-08-16 02:26:15-- https://raw.githubusercontent.com/ersilia-os/ersilia/master/dockerfiles/model-deploy/base/nginx.conf Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.109.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 162 [text/plain] Saving to: ‘nginx.conf’ nginx.conf 100%[=================================================>] 162 --.-KB/s in 0s 2023-08-16 02:26:16 (3.73 MB/s) - ‘nginx.conf’ saved [162/162] --2023-08-16 02:26:16-- https://raw.githubusercontent.com/ersilia-os/ersilia/master/dockerfiles/model-deploy/base/download-miniconda.sh Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.109.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 933 [text/plain] Saving to: ‘download-miniconda.sh’ download-miniconda.sh 100%[=================================================>] 933 --.-KB/s in 0s 2023-08-16 02:26:17 (17.5 MB/s) - ‘download-miniconda.sh’ saved [933/933] [+] Building 4.5s (14/14) FINISHED docker:default => [internal] load build definition from Dockerfile 0.0s => => transferring dockerfile: 945B 0.0s => [internal] load .dockerignore 0.0s => => transferring context: 2B 0.0s => [internal] load metadata for docker.io/library/python:3.7-slim-buster 4.3s => [auth] library/python:pull token for registry-1.docker.io 0.0s => [1/8] FROM docker.io/library/python:3.7-slim-buster@sha256:9bd2bfc822a533f99cbe6b1311d5bf0ff136f776ebac9b9854 0.0s => => resolve docker.io/library/python:3.7-slim-buster@sha256:9bd2bfc822a533f99cbe6b1311d5bf0ff136f776ebac9b9854 0.0s => [internal] load build context 0.0s => => transferring context: 1.43kB 0.0s => CACHED [2/8] WORKDIR /root 0.0s => CACHED [3/8] COPY download-miniconda.sh /root/download-miniconda.sh 0.0s => CACHED [4/8] RUN chmod + /root/download-miniconda.sh 0.0s => CACHED [5/8] RUN bash /root/download-miniconda.sh && apt-get install -y libxrender1 build-essential curl 0.0s => CACHED [6/8] COPY docker-entrypoint.sh /root/docker-entrypoint.sh 0.0s => CACHED [7/8] COPY nginx.conf /etc/nginx/sites-available/default 0.0s => CACHED [8/8] RUN chmod + /root/docker-entrypoint.sh 0.0s => exporting to image 0.0s => => exporting layers 0.0s => => writing image sha256:1e1ae1b7d8c429310f09af0bbd26f4293cdad5d7068b6ff432d7a121133cfd09 0.0s => => naming to docker.io/emmakodes/base:latest 0.0s --2023-08-16 02:26:21-- https://raw.githubusercontent.com/ersilia-os/ersilia/master/dockerfiles/model-deploy/model/Dockerfile Resolving raw.githubusercontent.com (raw.githubusercontent.com)... 185.199.110.133, 185.199.111.133, 185.199.109.133, ... Connecting to raw.githubusercontent.com (raw.githubusercontent.com)|185.199.110.133|:443... connected. HTTP request sent, awaiting response... 200 OK Length: 111 [text/plain] Saving to: ‘Dockerfile’ Dockerfile 100%[=================================================>] 111 --.-KB/s in 0s 2023-08-16 02:26:22 (2.43 MB/s) - ‘Dockerfile’ saved [111/111] WARNING! Using --password via the CLI is insecure. Use --password-stdin. Login Succeeded building for both linux/amd64,linux/arm64 [+] Building 1091.6s (9/9) FINISHED docker-container:container => [internal] load build definition from Dockerfile 0.1s => => transferring dockerfile: 141B 0.0s => [linux/arm64 internal] load metadata for docker.io/ersiliaos/base:latest 2.5s => [linux/amd64 internal] load metadata for docker.io/ersiliaos/base:latest 2.3s => [auth] ersiliaos/base:pull token for registry-1.docker.io 0.0s => [internal] load .dockerignore 0.0s => => transferring context: 2B 0.0s => CACHED [linux/arm64 1/2] FROM docker.io/ersiliaos/base:latest@sha256:f267747bef4b31ee6bbed6365af60939b3a69ba9 0.1s => => resolve docker.io/ersiliaos/base:latest@sha256:f267747bef4b31ee6bbed6365af60939b3a69ba9040a934b55b72f6c557 0.0s => CACHED [linux/amd64 1/2] FROM docker.io/ersiliaos/base:latest@sha256:f267747bef4b31ee6bbed6365af60939b3a69ba9 0.1s => => resolve docker.io/ersiliaos/base:latest@sha256:f267747bef4b31ee6bbed6365af60939b3a69ba9040a934b55b72f6c557 0.1s => ERROR [linux/arm64 2/2] RUN ersilia -v fetch eos2rd8 --from_github 1088.4s => CANCELED [linux/amd64 2/2] RUN ersilia -v fetch eos2rd8 --from_github 1088.8s ------ > [linux/arm64 2/2] RUN ersilia -v fetch eos2rd8 --from_github: 17.84 ⬇️ Fetching model eos2rd8: molt5-smiles-to-caption 17.96 01:26:46 | DEBUG | Initialized with URL: None 19.81 01:26:48 | INFO | GitHub CLI is not installed. Ersilia can work without it, but we highy recommend that you install this tool. 20.12 01:26:48 | DEBUG | Git LFS is installed 20.78 Git LFS initialized. 20.78 01:26:49 | DEBUG | Git LFS has been activated 21.94 01:26:50 | DEBUG | Connected to the internet 21.99 01:26:50 | DEBUG | Conda is installed 22.00 01:26:50 | DEBUG | EOS Home path exists 22.02 01:26:50 | INFO | Starting delete of model eos2rd8 40.82 01:27:09 | INFO | Deleting conda environment eos2rd8 52.86 01:27:21 | DEBUG | Deleting /root/eos/isaura/lake/eos2rd8_local.h5 52.87 01:27:21 | DEBUG | Deleting /root/eos/isaura/lake/eos2rd8_public.h5 52.89 01:27:21 | INFO | Removing docker images and stopping containers related to eos2rd8 53.06 01:27:21 | DEBUG | Model entry eos2rd8 was not available in the fetched models registry 53.07 01:27:21 | SUCCESS | Model eos2rd8 deleted successfully 53.69 Cloning into 'eos2rd8'... 57.25 rm: cannot remove '/tmp/ersilia-rr7ntt8s': Is a directory 58.25 01:27:26 | INFO | 🚀 Model starting... 58.25 01:27:26 | DEBUG | Preparing inner template if necessary 58.27 01:27:26 | DEBUG | The pack.py file already exists 58.28 01:27:26 | DEBUG | The Dockerfile file already exists 58.28 01:27:26 | DEBUG | The src folder already exists 58.29 01:27:26 | DEBUG | Changing python version if necessary 58.35 01:27:26 | DEBUG | {'version': '0.11.0', 'slim': False, 'python': 'py37'} 58.36 01:27:26 | DEBUG | User is root! Removing sudo commands 58.42 01:27:26 | DEBUG | Check if model can be run with vanilla (system) code (i.e. dockerfile has no installs) 58.43 01:27:26 | DEBUG | Check bentoml and python version 58.44 01:27:26 | INFO | BentoML version {'version': '0.11.0', 'slim': False, 'python': 'py37'} 58.45 01:27:26 | DEBUG | Custom Ersilia BentoML is used, no need for modifying protobuf version 58.46 01:27:26 | DEBUG | Model needs some installs 58.47 01:27:26 | DEBUG | Checking if only python/conda install will be sufficient 58.53 01:27:26 | DEBUG | Mode: conda 58.54 01:27:26 | DEBUG | Trying to remove path: /root/bentoml/repository/eos2rd8 58.55 01:27:26 | DEBUG | ...successfully 58.56 01:27:26 | DEBUG | ...but path did not exist! 58.58 01:27:26 | DEBUG | Initializing conda packer 58.58 01:27:26 | DEBUG | Packing model with Conda 58.59 01:27:26 | DEBUG | Writing install commands 58.61 01:27:26 | DEBUG | Run commands: ['pip install transformers==4.24.0', 'pip install sentencepiece==0.1.97', 'pip install torch==1.10.1+cpu torchvision==0.11.2+cpu torchaudio==0.10.1 -f https://download.pytorch.org/whl/cpu/torch_stable.html'] 58.61 01:27:26 | DEBUG | Writing install commands in /root/eos/dest/eos2rd8/model_install_commands.sh 58.62 01:27:26 | DEBUG | Setting up 58.63 01:27:26 | DEBUG | Installs file /root/eos/dest/eos2rd8/model_install_commands.sh 58.64 01:27:26 | DEBUG | Conda environment eos2rd8 70.15 01:27:38 | DEBUG | Environment eos2rd8 does not exist 80.52 01:27:48 | DEBUG | eosbase-bentoml-0.11.0-py37 base environment does not exist 80.53 01:27:48 | DEBUG | Setting up base environment eosbase-bentoml-0.11.0-py37 92.40 01:28:00 | DEBUG | Installing from ersilia's custom BentoML 139.6 Collecting package metadata (current_repodata.json): ...working... done 159.8 Solving environment: ...working... unsuccessful attempt using repodata from current_repodata.json, retrying with next repodata source. 161.3 Collecting package metadata (repodata.json): ...working... done 177.5 Solving environment: ...working... done 186.0 186.0 186.0 ==> WARNING: A newer version of conda exists. <== 186.0 current version: 23.5.2 186.0 latest version: 23.7.2 186.0 186.0 Please update conda by running 186.0 186.0 $ conda update -n base -c defaults conda 186.0 186.0 Or to minimize the number of packages updated during conda update use 186.0 186.0 conda install conda=23.7.2 186.0 186.0 187.0 187.0 ## Package Plan ## 187.0 187.0 environment location: /usr/bin/conda/envs/eosbase-bentoml-0.11.0-py37 187.0 187.0 added / updated specs: 187.0 - python=3.7 187.0 187.0 187.0 The following packages will be downloaded: 187.0 187.0 package | build 187.0 ---------------------------|----------------- 187.0 certifi-2022.12.7 | py37hd43f75c_0 149 KB 187.0 openssl-1.1.1v | h2f4d8fa_0 3.6 MB 187.0 pip-22.3.1 | py37hd43f75c_0 2.7 MB 187.0 python-3.7.16 | h89984f6_0 44.8 MB 187.0 setuptools-65.6.3 | py37hd43f75c_0 1.1 MB 187.0 wheel-0.38.4 | py37hd43f75c_0 63 KB 187.0 ------------------------------------------------------------ 187.0 Total: 52.4 MB 187.0 187.0 The following NEW packages will be INSTALLED: 187.0 187.0 _libgcc_mutex pkgs/main/linux-aarch64::_libgcc_mutex-0.1-main 187.0 _openmp_mutex pkgs/main/linux-aarch64::_openmp_mutex-5.1-51_gnu 187.0 ca-certificates pkgs/main/linux-aarch64::ca-certificates-2023.05.30-hd43f75c_0 187.0 certifi pkgs/main/linux-aarch64::certifi-2022.12.7-py37hd43f75c_0 187.0 ld_impl_linux-aar~ pkgs/main/linux-aarch64::ld_impl_linux-aarch64-2.38-h8131f2d_1 187.0 libffi pkgs/main/linux-aarch64::libffi-3.4.4-h419075a_0 187.0 libgcc-ng pkgs/main/linux-aarch64::libgcc-ng-11.2.0-h1234567_1 187.0 libgomp pkgs/main/linux-aarch64::libgomp-11.2.0-h1234567_1 187.0 libstdcxx-ng pkgs/main/linux-aarch64::libstdcxx-ng-11.2.0-h1234567_1 187.0 ncurses pkgs/main/linux-aarch64::ncurses-6.4-h419075a_0 187.0 openssl pkgs/main/linux-aarch64::openssl-1.1.1v-h2f4d8fa_0 187.0 pip pkgs/main/linux-aarch64::pip-22.3.1-py37hd43f75c_0 187.0 python pkgs/main/linux-aarch64::python-3.7.16-h89984f6_0 187.0 readline pkgs/main/linux-aarch64::readline-8.2-h998d150_0 187.0 setuptools pkgs/main/linux-aarch64::setuptools-65.6.3-py37hd43f75c_0 187.0 sqlite pkgs/main/linux-aarch64::sqlite-3.41.2-h998d150_0 187.0 tk pkgs/main/linux-aarch64::tk-8.6.12-h241ca14_0 187.0 wheel pkgs/main/linux-aarch64::wheel-0.38.4-py37hd43f75c_0 187.0 xz pkgs/main/linux-aarch64::xz-5.4.2-h998d150_0 187.0 zlib pkgs/main/linux-aarch64::zlib-1.2.13-h998d150_0 187.0 187.0 187.0 187.0 Downloading and Extracting Packages 227.2 Preparing transaction: ...working... done 233.5 Verifying transaction: ...working... done 256.8 Executing transaction: ...working... done 287.7 # 287.7 # To activate this environment, use 287.7 # 287.7 # $ conda activate eosbase-bentoml-0.11.0-py37 287.7 # 287.7 # To deactivate an active environment, use 287.7 # 287.7 # $ conda deactivate 287.7 299.1 Collecting git+https://github.com/ersilia-os/bentoml-ersilia.git 299.1 Cloning https://github.com/ersilia-os/bentoml-ersilia.git to /tmp/pip-req-build-j64svrk8 299.2 Running command git clone --filter=blob:none --quiet https://github.com/ersilia-os/bentoml-ersilia.git /tmp/pip-req-build-j64svrk8 318.4 Resolved https://github.com/ersilia-os/bentoml-ersilia.git to commit 34a26149d92b5dc4a09b6f51aaaa85b3d8116ae4 318.5 Installing build dependencies: started 342.6 Installing build dependencies: finished with status 'done' 342.6 Getting requirements to build wheel: started 347.8 Getting requirements to build wheel: finished with status 'done' 347.8 Preparing metadata (pyproject.toml): started 351.1 Preparing metadata (pyproject.toml): finished with status 'done' 352.9 Collecting docker 353.0 Using cached docker-6.1.3-py3-none-any.whl (148 kB) 366.1 Collecting boto3 366.8 Downloading boto3-1.28.27-py3-none-any.whl (135 kB) 367.1 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 135.8/135.8 kB 454.2 kB/s eta 0:00:00 373.0 Collecting numpy 373.1 Using cached numpy-1.21.6-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (13.0 MB) 374.8 Collecting requests 374.9 Using cached requests-2.31.0-py3-none-any.whl (62 kB) 375.3 Collecting prometheus-client 375.4 Using cached prometheus_client-0.17.1-py3-none-any.whl (60 kB) 375.7 Collecting tabulate 375.8 Using cached tabulate-0.9.0-py3-none-any.whl (35 kB) 380.9 Collecting ruamel.yaml 381.0 Using cached ruamel.yaml-0.17.32-py3-none-any.whl (112 kB) 381.6 Collecting flask 381.6 Using cached Flask-2.2.5-py3-none-any.whl (101 kB) 390.7 Collecting sqlalchemy 391.0 Downloading SQLAlchemy-2.0.20-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (2.9 MB) 393.3 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.9/2.9 MB 1.3 MB/s eta 0:00:00 393.7 Collecting python-json-logger 393.8 Using cached python_json_logger-2.0.7-py3-none-any.whl (8.1 kB) 394.5 Collecting werkzeug 394.6 Using cached Werkzeug-2.2.3-py3-none-any.whl (233 kB) 401.5 Collecting multidict 401.5 Using cached multidict-6.0.4-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (96 kB) 401.9 Collecting cerberus 402.1 Downloading Cerberus-1.3.5-py3-none-any.whl (30 kB) 403.0 Collecting sqlalchemy-utils 403.0 Using cached SQLAlchemy_Utils-0.41.1-py3-none-any.whl (92 kB) 403.9 Collecting humanfriendly 404.0 Using cached humanfriendly-10.0-py2.py3-none-any.whl (86 kB) 404.4 Collecting chardet 404.4 Using cached chardet-5.2.0-py3-none-any.whl (199 kB) 405.6 Collecting alembic 405.6 Using cached alembic-1.11.2-py3-none-any.whl (225 kB) 406.3 Collecting packaging 406.3 Using cached packaging-23.1-py3-none-any.whl (48 kB) 413.0 Collecting protobuf<3.19,>=3.8.0 413.0 Using cached protobuf-3.18.3-cp37-cp37m-manylinux2014_aarch64.whl (925 kB) 415.5 Collecting psutil 415.6 Using cached psutil-5.9.5.tar.gz (493 kB) 416.5 Installing build dependencies: started 435.7 Installing build dependencies: finished with status 'done' 435.7 Getting requirements to build wheel: started 440.1 Getting requirements to build wheel: finished with status 'done' 440.1 Preparing metadata (pyproject.toml): started 444.4 Preparing metadata (pyproject.toml): finished with status 'done' 445.2 Collecting Mako 445.2 Using cached Mako-1.2.4-py3-none-any.whl (78 kB) 445.7 Collecting typing-extensions>=4 445.8 Using cached typing_extensions-4.7.1-py3-none-any.whl (33 kB) 447.3 Collecting importlib-metadata 447.3 Using cached importlib_metadata-6.7.0-py3-none-any.whl (22 kB) 448.8 Collecting importlib-resources 448.8 Using cached importlib_resources-5.12.0-py3-none-any.whl (36 kB) 453.5 Collecting greenlet!=0.4.17 453.6 Using cached greenlet-2.0.2-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (557 kB) 454.5 Collecting jmespath<2.0.0,>=0.7.1 454.5 Using cached jmespath-1.0.1-py3-none-any.whl (20 kB) 467.6 Collecting botocore<1.32.0,>=1.31.27 467.7 Downloading botocore-1.31.27-py3-none-any.whl (11.1 MB) 473.1 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 11.1/11.1 MB 2.1 MB/s eta 0:00:00 474.2 Collecting s3transfer<0.7.0,>=0.6.0 474.3 Downloading s3transfer-0.6.2-py3-none-any.whl (79 kB) 474.4 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 79.8/79.8 kB 1.9 MB/s eta 0:00:00 475.9 Collecting urllib3>=1.26.0 475.9 Using cached urllib3-2.0.4-py3-none-any.whl (123 kB) 476.8 Collecting websocket-client>=0.32.0 476.9 Using cached websocket_client-1.6.1-py3-none-any.whl (56 kB) 477.9 Collecting idna<4,>=2.5 477.9 Using cached idna-3.4-py3-none-any.whl (61 kB) 479.4 Collecting charset-normalizer<4,>=2 479.4 Using cached charset_normalizer-3.2.0-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (171 kB) 479.4 Requirement already satisfied: certifi>=2017.4.17 in /usr/bin/conda/envs/eosbase-bentoml-0.11.0-py37/lib/python3.7/site-packages (from requests->bentoml==0.11.0) (2022.12.7) 480.1 Collecting Jinja2>=3.0 480.2 Using cached Jinja2-3.1.2-py3-none-any.whl (133 kB) 480.5 Collecting itsdangerous>=2.0 480.5 Using cached itsdangerous-2.1.2-py3-none-any.whl (15 kB) 481.0 Collecting click>=8.0 481.0 Using cached click-8.1.6-py3-none-any.whl (97 kB) 482.5 Collecting MarkupSafe>=2.1.1 482.5 Using cached MarkupSafe-2.1.3-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (26 kB) 483.7 Collecting ruamel.yaml.clib>=0.2.7 483.7 Using cached ruamel.yaml.clib-0.2.7-cp37-cp37m-manylinux2014_aarch64.whl (591 kB) 485.0 Collecting urllib3>=1.26.0 485.0 Using cached urllib3-1.26.16-py2.py3-none-any.whl (143 kB) 485.5 Collecting python-dateutil<3.0.0,>=2.1 485.5 Using cached python_dateutil-2.8.2-py2.py3-none-any.whl (247 kB) 487.0 Collecting zipp>=0.5 487.0 Using cached zipp-3.15.0-py3-none-any.whl (6.8 kB) 492.2 Collecting six>=1.5 492.2 Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) 492.8 Building wheels for collected packages: bentoml, psutil 492.8 Building wheel for bentoml (pyproject.toml): started 499.4 Building wheel for bentoml (pyproject.toml): finished with status 'done' 499.4 Created wheel for bentoml: filename=bentoml-0.11.0-py3-none-any.whl size=665276 sha256=b4d4ca7e3c93c26238db587d8ed5a38ba6df2dd9fc3497d4ce5c0135e9965b76 499.4 Stored in directory: /tmp/pip-ephem-wheel-cache-7ruk7278/wheels/c5/ae/16/6ea4097c679d2e7a3a991c633003ec5b4e1c42a0a309fa2d9d 499.5 Building wheel for psutil (pyproject.toml): started 551.7 Building wheel for psutil (pyproject.toml): finished with status 'done' 551.7 Created wheel for psutil: filename=psutil-5.9.5-cp37-abi3-linux_aarch64.whl size=290195 sha256=81e403d60f5e781c9798c66e858c685c3998fb09f04ab29d858acd2921051688 551.7 Stored in directory: /root/.cache/pip/wheels/a1/47/ca/511b21ca6e183aea2b9e03b7a0a7ccd96fd85594a9d1b9435e 551.7 Successfully built bentoml psutil 561.9 Installing collected packages: zipp, websocket-client, urllib3, typing-extensions, tabulate, six, ruamel.yaml.clib, python-json-logger, psutil, protobuf, prometheus-client, packaging, numpy, multidict, MarkupSafe, jmespath, itsdangerous, idna, humanfriendly, greenlet, charset-normalizer, chardet, werkzeug, ruamel.yaml, requests, python-dateutil, Jinja2, importlib-resources, importlib-metadata, sqlalchemy, Mako, docker, click, cerberus, botocore, sqlalchemy-utils, s3transfer, flask, alembic, boto3, bentoml 628.5 Successfully installed Jinja2-3.1.2 Mako-1.2.4 MarkupSafe-2.1.3 alembic-1.11.2 bentoml-0.11.0 boto3-1.28.27 botocore-1.31.27 cerberus-1.3.5 chardet-5.2.0 charset-normalizer-3.2.0 click-8.1.6 docker-6.1.3 flask-2.2.5 greenlet-2.0.2 humanfriendly-10.0 idna-3.4 importlib-metadata-6.7.0 importlib-resources-5.12.0 itsdangerous-2.1.2 jmespath-1.0.1 multidict-6.0.4 numpy-1.21.6 packaging-23.1 prometheus-client-0.17.1 protobuf-3.18.3 psutil-5.9.5 python-dateutil-2.8.2 python-json-logger-2.0.7 requests-2.31.0 ruamel.yaml-0.17.32 ruamel.yaml.clib-0.2.7 s3transfer-0.6.2 six-1.16.0 sqlalchemy-2.0.20 sqlalchemy-utils-0.41.1 tabulate-0.9.0 typing-extensions-4.7.1 urllib3-1.26.16 websocket-client-1.6.1 werkzeug-2.2.3 zipp-3.15.0 628.5 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv 632.6 01:37:00 | INFO | Cloning base conda environment and adding model dependencies 699.2 Source: /usr/bin/conda/envs/eosbase-bentoml-0.11.0-py37 699.2 Destination: /usr/bin/conda/envs/eos2rd8 699.2 Packages: 20 699.2 Files: 5781 699.2 699.2 Downloading and Extracting Packages 699.2 699.2 699.2 Downloading and Extracting Packages 699.2 699.2 Preparing transaction: ...working... done 706.1 Verifying transaction: ...working... done 731.8 Executing transaction: ...working... done 745.1 # 745.1 # To activate this environment, use 745.1 # 745.1 # $ conda activate eos2rd8 745.1 # 745.1 # To deactivate an active environment, use 745.1 # 745.1 # $ conda deactivate 745.1 746.0 01:38:54 | DEBUG | Run commandlines on eos2rd8 746.0 01:38:54 | DEBUG | python -m pip --disable-pip-version-check install transformers==4.24.0 746.0 python -m pip --disable-pip-version-check install sentencepiece==0.1.97 746.0 python -m pip --disable-pip-version-check install torch==1.10.1+cpu torchvision==0.11.2+cpu torchaudio==0.10.1 -f https://download.pytorch.org/whl/cpu/torch_stable.html 746.0 python -m pip --disable-pip-version-check install git+https://github.com/ersilia-os/bentoml-ersilia.git 746.0 759.0 01:39:07 | DEBUG | Activating base environment 759.1 01:39:07 | DEBUG | Current working directory: /root/eos/dest/eos2rd8 759.2 01:39:07 | DEBUG | Running bash /tmp/ersilia-gznphrf_/script.sh 2>&1 | tee -a /tmp/ersilia-0ptmpi8p/command_outputs.log 773.2 # conda environments: 773.2 # 773.2 base /usr/bin/conda 773.2 eos2rd8 * /usr/bin/conda/envs/eos2rd8 773.2 eosbase-bentoml-0.11.0-py37 /usr/bin/conda/envs/eosbase-bentoml-0.11.0-py37 773.2 782.3 Collecting transformers==4.24.0 784.4 Downloading transformers-4.24.0-py3-none-any.whl (5.5 MB) 806.1 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.5/5.5 MB 254.0 kB/s eta 0:00:00 816.1 Collecting tqdm>=4.27 816.7 Downloading tqdm-4.66.1-py3-none-any.whl (78 kB) 817.2 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.3/78.3 kB 171.0 kB/s eta 0:00:00 818.5 Collecting pyyaml>=5.1 818.6 Using cached PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (658 kB) 819.4 Collecting filelock 819.6 Downloading filelock-3.12.2-py3-none-any.whl (10 kB) 824.0 Collecting tokenizers!=0.11.3,<0.14,>=0.11.1 824.6 Downloading tokenizers-0.13.3-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (7.5 MB) 840.6 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.5/7.5 MB 466.6 kB/s eta 0:00:00 840.8 Requirement already satisfied: numpy>=1.17 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from transformers==4.24.0) (1.21.6) 853.4 Collecting regex!=2019.12.17 854.0 Downloading regex-2023.8.8-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (757 kB) 855.3 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 757.7/757.7 kB 588.6 kB/s eta 0:00:00 856.4 Collecting huggingface-hub<1.0,>=0.10.0 856.6 Downloading huggingface_hub-0.16.4-py3-none-any.whl (268 kB) 857.1 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 268.8/268.8 kB 621.5 kB/s eta 0:00:00 857.1 Requirement already satisfied: importlib-metadata in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from transformers==4.24.0) (6.7.0) 857.1 Requirement already satisfied: requests in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from transformers==4.24.0) (2.31.0) 857.1 Requirement already satisfied: packaging>=20.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from transformers==4.24.0) (23.1) 859.0 Requirement already satisfied: typing-extensions>=3.7.4.3 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from huggingface-hub<1.0,>=0.10.0->transformers==4.24.0) (4.7.1) 859.9 Collecting fsspec 860.2 Downloading fsspec-2023.1.0-py3-none-any.whl (143 kB) 860.4 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 143.0/143.0 kB 1.2 MB/s eta 0:00:00 861.8 Requirement already satisfied: zipp>=0.5 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from importlib-metadata->transformers==4.24.0) (3.15.0) 861.9 Requirement already satisfied: certifi>=2017.4.17 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from requests->transformers==4.24.0) (2022.12.7) 862.0 Requirement already satisfied: charset-normalizer<4,>=2 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from requests->transformers==4.24.0) (3.2.0) 862.0 Requirement already satisfied: urllib3<3,>=1.21.1 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from requests->transformers==4.24.0) (1.26.16) 862.0 Requirement already satisfied: idna<4,>=2.5 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from requests->transformers==4.24.0) (3.4) 877.7 Installing collected packages: tokenizers, tqdm, regex, pyyaml, fsspec, filelock, huggingface-hub, transformers 921.1 Successfully installed filelock-3.12.2 fsspec-2023.1.0 huggingface-hub-0.16.4 pyyaml-6.0.1 regex-2023.8.8 tokenizers-0.13.3 tqdm-4.66.1 transformers-4.24.0 921.1 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv 931.2 Collecting sentencepiece==0.1.97 932.5 Downloading sentencepiece-0.1.97-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (1.2 MB) 939.7 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 171.2 kB/s eta 0:00:00 958.7 Installing collected packages: sentencepiece 959.4 Successfully installed sentencepiece-0.1.97 959.5 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv 967.9 Looking in links: https://download.pytorch.org/whl/cpu/torch_stable.html 983.8 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='download.pytorch.org', port=443): Read timed out. (read timeout=15)")': /whl/cpu/torch_stable.html 992.0 ERROR: Could not find a version that satisfies the requirement torch==1.10.1+cpu (from versions: 1.7.1, 1.8.0, 1.8.1, 1.9.0, 1.10.0, 1.10.1, 1.10.2, 1.11.0, 1.12.0, 1.12.1, 1.13.0, 1.13.1) 992.0 ERROR: No matching distribution found for torch==1.10.1+cpu 998.1 Collecting git+https://github.com/ersilia-os/bentoml-ersilia.git 998.1 Cloning https://github.com/ersilia-os/bentoml-ersilia.git to /tmp/pip-req-build-bp8mryk4 998.2 Running command git clone --filter=blob:none --quiet https://github.com/ersilia-os/bentoml-ersilia.git /tmp/pip-req-build-bp8mryk4 1018.0 Resolved https://github.com/ersilia-os/bentoml-ersilia.git to commit 34a26149d92b5dc4a09b6f51aaaa85b3d8116ae4 1018.1 Installing build dependencies: started 1061.3 Installing build dependencies: finished with status 'done' 1061.3 Getting requirements to build wheel: started 1064.2 Getting requirements to build wheel: finished with status 'done' 1064.2 Preparing metadata (pyproject.toml): started 1067.2 Preparing metadata (pyproject.toml): finished with status 'done' 1067.4 Requirement already satisfied: alembic in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (1.11.2) 1067.4 Requirement already satisfied: cerberus in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (1.3.5) 1067.4 Requirement already satisfied: docker in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (6.1.3) 1067.4 Requirement already satisfied: numpy in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (1.21.6) 1067.4 Requirement already satisfied: werkzeug in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (2.2.3) 1067.4 Requirement already satisfied: boto3 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (1.28.27) 1067.4 Requirement already satisfied: ruamel.yaml in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (0.17.32) 1067.4 Requirement already satisfied: humanfriendly in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (10.0) 1067.4 Requirement already satisfied: packaging in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (23.1) 1067.4 Requirement already satisfied: prometheus-client in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (0.17.1) 1067.4 Requirement already satisfied: python-json-logger in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (2.0.7) 1067.4 Requirement already satisfied: protobuf<3.19,>=3.8.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (3.18.3) 1067.4 Requirement already satisfied: sqlalchemy-utils in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (0.41.1) 1067.4 Requirement already satisfied: tabulate in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (0.9.0) 1067.5 Requirement already satisfied: requests in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (2.31.0) 1067.5 Requirement already satisfied: sqlalchemy in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (2.0.20) 1067.5 Requirement already satisfied: multidict in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (6.0.4) 1067.5 Requirement already satisfied: chardet in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (5.2.0) 1067.5 Requirement already satisfied: flask in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (2.2.5) 1067.5 Requirement already satisfied: psutil in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (5.9.5) 1067.7 Requirement already satisfied: typing-extensions>=4 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from alembic->bentoml==0.11.0) (4.7.1) 1067.7 Requirement already satisfied: Mako in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from alembic->bentoml==0.11.0) (1.2.4) 1067.7 Requirement already satisfied: importlib-metadata in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from alembic->bentoml==0.11.0) (6.7.0) 1067.7 Requirement already satisfied: importlib-resources in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from alembic->bentoml==0.11.0) (5.12.0) 1068.5 Requirement already satisfied: greenlet!=0.4.17 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from sqlalchemy->bentoml==0.11.0) (2.0.2) 1068.6 Requirement already satisfied: s3transfer<0.7.0,>=0.6.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from boto3->bentoml==0.11.0) (0.6.2) 1068.6 Requirement already satisfied: botocore<1.32.0,>=1.31.27 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from boto3->bentoml==0.11.0) (1.31.27) 1068.6 Requirement already satisfied: jmespath<2.0.0,>=0.7.1 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from boto3->bentoml==0.11.0) (1.0.1) 1068.7 Requirement already satisfied: urllib3>=1.26.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from docker->bentoml==0.11.0) (1.26.16) 1068.7 Requirement already satisfied: websocket-client>=0.32.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from docker->bentoml==0.11.0) (1.6.1) 1068.8 Requirement already satisfied: idna<4,>=2.5 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from requests->bentoml==0.11.0) (3.4) 1068.8 Requirement already satisfied: certifi>=2017.4.17 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from requests->bentoml==0.11.0) (2022.12.7) 1068.8 Requirement already satisfied: charset-normalizer<4,>=2 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from requests->bentoml==0.11.0) (3.2.0) 1068.9 Requirement already satisfied: itsdangerous>=2.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from flask->bentoml==0.11.0) (2.1.2) 1069.0 Requirement already satisfied: Jinja2>=3.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from flask->bentoml==0.11.0) (3.1.2) 1069.0 Requirement already satisfied: click>=8.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from flask->bentoml==0.11.0) (8.1.6) 1069.0 Requirement already satisfied: MarkupSafe>=2.1.1 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from werkzeug->bentoml==0.11.0) (2.1.3) 1069.4 Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from ruamel.yaml->bentoml==0.11.0) (0.2.7) 1070.7 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from botocore<1.32.0,>=1.31.27->boto3->bentoml==0.11.0) (2.8.2) 1071.4 Requirement already satisfied: zipp>=0.5 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from importlib-metadata->alembic->bentoml==0.11.0) (3.15.0) 1073.1 Requirement already satisfied: six>=1.5 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from python-dateutil<3.0.0,>=2.1->botocore<1.32.0,>=1.31.27->boto3->bentoml==0.11.0) (1.16.0) 1085.1 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv 1085.6 01:44:33 | DEBUG | # conda environments: 1085.6 # 1085.6 base /usr/bin/conda 1085.6 eos2rd8 * /usr/bin/conda/envs/eos2rd8 1085.6 eosbase-bentoml-0.11.0-py37 /usr/bin/conda/envs/eosbase-bentoml-0.11.0-py37 1085.6 1085.6 Collecting transformers==4.24.0 1085.6 Downloading transformers-4.24.0-py3-none-any.whl (5.5 MB) 1085.6 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 5.5/5.5 MB 254.0 kB/s eta 0:00:00 1085.6 Collecting tqdm>=4.27 1085.6 Downloading tqdm-4.66.1-py3-none-any.whl (78 kB) 1085.6 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.3/78.3 kB 171.0 kB/s eta 0:00:00 1085.6 Collecting pyyaml>=5.1 1085.6 Using cached PyYAML-6.0.1-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (658 kB) 1085.6 Collecting filelock 1085.6 Downloading filelock-3.12.2-py3-none-any.whl (10 kB) 1085.6 Collecting tokenizers!=0.11.3,<0.14,>=0.11.1 1085.6 Downloading tokenizers-0.13.3-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (7.5 MB) 1085.6 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.5/7.5 MB 466.6 kB/s eta 0:00:00 1085.6 Requirement already satisfied: numpy>=1.17 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from transformers==4.24.0) (1.21.6) 1085.6 Collecting regex!=2019.12.17 1085.6 Downloading regex-2023.8.8-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (757 kB) 1085.6 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 757.7/757.7 kB 588.6 kB/s eta 0:00:00 1085.6 Collecting huggingface-hub<1.0,>=0.10.0 1085.6 Downloading huggingface_hub-0.16.4-py3-none-any.whl (268 kB) 1085.6 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 268.8/268.8 kB 621.5 kB/s eta 0:00:00 1085.6 Requirement already satisfied: importlib-metadata in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from transformers==4.24.0) (6.7.0) 1085.6 Requirement already satisfied: requests in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from transformers==4.24.0) (2.31.0) 1085.6 Requirement already satisfied: packaging>=20.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from transformers==4.24.0) (23.1) 1085.6 Requirement already satisfied: typing-extensions>=3.7.4.3 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from huggingface-hub<1.0,>=0.10.0->transformers==4.24.0) (4.7.1) 1085.6 Collecting fsspec 1085.6 Downloading fsspec-2023.1.0-py3-none-any.whl (143 kB) 1085.6 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 143.0/143.0 kB 1.2 MB/s eta 0:00:00 1085.6 Requirement already satisfied: zipp>=0.5 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from importlib-metadata->transformers==4.24.0) (3.15.0) 1085.6 Requirement already satisfied: certifi>=2017.4.17 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from requests->transformers==4.24.0) (2022.12.7) 1085.6 Requirement already satisfied: charset-normalizer<4,>=2 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from requests->transformers==4.24.0) (3.2.0) 1085.6 Requirement already satisfied: urllib3<3,>=1.21.1 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from requests->transformers==4.24.0) (1.26.16) 1085.6 Requirement already satisfied: idna<4,>=2.5 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from requests->transformers==4.24.0) (3.4) 1085.6 Installing collected packages: tokenizers, tqdm, regex, pyyaml, fsspec, filelock, huggingface-hub, transformers 1085.6 Successfully installed filelock-3.12.2 fsspec-2023.1.0 huggingface-hub-0.16.4 pyyaml-6.0.1 regex-2023.8.8 tokenizers-0.13.3 tqdm-4.66.1 transformers-4.24.0 1085.6 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv 1085.6 Collecting sentencepiece==0.1.97 1085.6 Downloading sentencepiece-0.1.97-cp37-cp37m-manylinux_2_17_aarch64.manylinux2014_aarch64.whl (1.2 MB) 1085.6 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 171.2 kB/s eta 0:00:00 1085.6 Installing collected packages: sentencepiece 1085.6 Successfully installed sentencepiece-0.1.97 1085.6 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv 1085.6 Looking in links: https://download.pytorch.org/whl/cpu/torch_stable.html 1085.6 WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'ReadTimeoutError("HTTPSConnectionPool(host='download.pytorch.org', port=443): Read timed out. (read timeout=15)")': /whl/cpu/torch_stable.html 1085.6 ERROR: Could not find a version that satisfies the requirement torch==1.10.1+cpu (from versions: 1.7.1, 1.8.0, 1.8.1, 1.9.0, 1.10.0, 1.10.1, 1.10.2, 1.11.0, 1.12.0, 1.12.1, 1.13.0, 1.13.1) 1085.6 ERROR: No matching distribution found for torch==1.10.1+cpu 1085.6 Collecting git+https://github.com/ersilia-os/bentoml-ersilia.git 1085.6 Cloning https://github.com/ersilia-os/bentoml-ersilia.git to /tmp/pip-req-build-bp8mryk4 1085.6 Running command git clone --filter=blob:none --quiet https://github.com/ersilia-os/bentoml-ersilia.git /tmp/pip-req-build-bp8mryk4 1085.6 Resolved https://github.com/ersilia-os/bentoml-ersilia.git to commit 34a26149d92b5dc4a09b6f51aaaa85b3d8116ae4 1085.6 Installing build dependencies: started 1085.6 Installing build dependencies: finished with status 'done' 1085.6 Getting requirements to build wheel: started 1085.6 Getting requirements to build wheel: finished with status 'done' 1085.6 Preparing metadata (pyproject.toml): started 1085.6 Preparing metadata (pyproject.toml): finished with status 'done' 1085.6 Requirement already satisfied: alembic in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (1.11.2) 1085.6 Requirement already satisfied: cerberus in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (1.3.5) 1085.6 Requirement already satisfied: docker in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (6.1.3) 1085.6 Requirement already satisfied: numpy in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (1.21.6) 1085.6 Requirement already satisfied: werkzeug in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (2.2.3) 1085.6 Requirement already satisfied: boto3 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (1.28.27) 1085.6 Requirement already satisfied: ruamel.yaml in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (0.17.32) 1085.6 Requirement already satisfied: humanfriendly in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (10.0) 1085.6 Requirement already satisfied: packaging in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (23.1) 1085.6 Requirement already satisfied: prometheus-client in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (0.17.1) 1085.6 Requirement already satisfied: python-json-logger in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (2.0.7) 1085.6 Requirement already satisfied: protobuf<3.19,>=3.8.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (3.18.3) 1085.6 Requirement already satisfied: sqlalchemy-utils in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (0.41.1) 1085.6 Requirement already satisfied: tabulate in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (0.9.0) 1085.6 Requirement already satisfied: requests in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (2.31.0) 1085.6 Requirement already satisfied: sqlalchemy in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (2.0.20) 1085.6 Requirement already satisfied: multidict in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (6.0.4) 1085.6 Requirement already satisfied: chardet in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (5.2.0) 1085.6 Requirement already satisfied: flask in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (2.2.5) 1085.6 Requirement already satisfied: psutil in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from bentoml==0.11.0) (5.9.5) 1085.6 Requirement already satisfied: typing-extensions>=4 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from alembic->bentoml==0.11.0) (4.7.1) 1085.6 Requirement already satisfied: Mako in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from alembic->bentoml==0.11.0) (1.2.4) 1085.6 Requirement already satisfied: importlib-metadata in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from alembic->bentoml==0.11.0) (6.7.0) 1085.6 Requirement already satisfied: importlib-resources in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from alembic->bentoml==0.11.0) (5.12.0) 1085.6 Requirement already satisfied: greenlet!=0.4.17 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from sqlalchemy->bentoml==0.11.0) (2.0.2) 1085.6 Requirement already satisfied: s3transfer<0.7.0,>=0.6.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from boto3->bentoml==0.11.0) (0.6.2) 1085.6 Requirement already satisfied: botocore<1.32.0,>=1.31.27 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from boto3->bentoml==0.11.0) (1.31.27) 1085.6 Requirement already satisfied: jmespath<2.0.0,>=0.7.1 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from boto3->bentoml==0.11.0) (1.0.1) 1085.6 Requirement already satisfied: urllib3>=1.26.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from docker->bentoml==0.11.0) (1.26.16) 1085.6 Requirement already satisfied: websocket-client>=0.32.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from docker->bentoml==0.11.0) (1.6.1) 1085.6 Requirement already satisfied: idna<4,>=2.5 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from requests->bentoml==0.11.0) (3.4) 1085.6 Requirement already satisfied: certifi>=2017.4.17 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from requests->bentoml==0.11.0) (2022.12.7) 1085.6 Requirement already satisfied: charset-normalizer<4,>=2 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from requests->bentoml==0.11.0) (3.2.0) 1085.6 Requirement already satisfied: itsdangerous>=2.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from flask->bentoml==0.11.0) (2.1.2) 1085.6 Requirement already satisfied: Jinja2>=3.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from flask->bentoml==0.11.0) (3.1.2) 1085.6 Requirement already satisfied: click>=8.0 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from flask->bentoml==0.11.0) (8.1.6) 1085.6 Requirement already satisfied: MarkupSafe>=2.1.1 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from werkzeug->bentoml==0.11.0) (2.1.3) 1085.6 Requirement already satisfied: ruamel.yaml.clib>=0.2.7 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from ruamel.yaml->bentoml==0.11.0) (0.2.7) 1085.6 Requirement already satisfied: python-dateutil<3.0.0,>=2.1 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from botocore<1.32.0,>=1.31.27->boto3->bentoml==0.11.0) (2.8.2) 1085.6 Requirement already satisfied: zipp>=0.5 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from importlib-metadata->alembic->bentoml==0.11.0) (3.15.0) 1085.6 Requirement already satisfied: six>=1.5 in /usr/bin/conda/envs/eos2rd8/lib/python3.7/site-packages (from python-dateutil<3.0.0,>=2.1->botocore<1.32.0,>=1.31.27->boto3->bentoml==0.11.0) (1.16.0) 1085.6 WARNING: Running pip as the 'root' user can result in broken permissions and conflicting behaviour with the system package manager. It is recommended to use a virtual environment instead: https://pip.pypa.io/warnings/venv 1085.6 1085.6 01:44:33 | DEBUG | Error occurred while running: bash /tmp/ersilia-gznphrf_/script.sh 2>&1 | tee -a /tmp/ersilia-0ptmpi8p/command_outputs.log 1085.8 01:44:33 | ERROR | Ersilia exception class: 1085.8 ModelPackageInstallError 1085.8 1085.8 Detailed error: 1085.8 Error occured while installing package by running "bash /tmp/ersilia-gznphrf_/script.sh 2>&1 | tee -a /tmp/ersilia-0ptmpi8p/command_outputs.log" command 1085.8 1085.8 1085.8 Hints: 1085.8 Try to manually activate the model environment and install package manually. 1085.8 If this does not work, please report the error at: 1085.8 - https://github.com/ersilia-os/ersilia 1085.8 1085.8 1085.8 1085.9 🚨🚨🚨 Something went wrong with Ersilia 🚨🚨🚨 1085.9 1085.9 Error message: 1085.9 1085.9 Ersilia exception class: 1085.9 ModelPackageInstallError 1085.9 1085.9 Detailed error: 1085.9 Error occured while installing package by running "bash /tmp/ersilia-gznphrf_/script.sh 2>&1 | tee -a /tmp/ersilia-0ptmpi8p/command_outputs.log" command 1085.9 1085.9 1085.9 Hints: 1085.9 Try to manually activate the model environment and install package manually. 1085.9 If this does not work, please report the error at: 1085.9 - https://github.com/ersilia-os/ersilia 1085.9 1085.9 1085.9 1085.9 If this error message is not helpful, open an issue at: 1085.9 - https://github.com/ersilia-os/ersilia 1085.9 Or feel free to reach out to us at: 1085.9 - hello[at]ersilia.io 1085.9 1085.9 If you haven't, try to run your command in verbose mode (-v in the CLI) 1085.9 - You will find the console log file in: /root/eos/current.log ------ Dockerfile:4 -------------------- 2 | ARG MODEL=eos2rd8 3 | ENV MODEL=$MODEL 4 | >>> RUN ersilia -v fetch $MODEL --from_github [+] Building 1846.4s (4/5) docker:default => [internal] load .dockerignore 0.1s => => transferring context: 2B 0.0sc => [internal] load build definition from Dockerfile 0.1s => => transferring dockerfile: 141B 0.0s => [internal] load metadata for docker.io/ersiliaos/base:latest 0.0s [+] Building 3522.7s (6/6) FINISHED docker:default => [internal] load .dockerignore 0.1s => => transferring context: 2B 0.0s => [internal] load build definition from Dockerfile 0.1s => => transferring dockerfile: 141B 0.0s => [internal] load metadata for docker.io/ersiliaos/base:latest 0.0s => CACHED [1/2] FROM docker.io/ersiliaos/base:latest 0.0s => [2/2] RUN ersilia -v fetch eos2rd8 --from_github 3360.5s => exporting to image 161.7s => => exporting layers 161.6s => => writing image sha256:0699d51ffccc9d318f7fd47fdace26e14adb59d08bd80753b587f93f80802113 0.0s => => naming to docker.io/emmakodes/eos2rd8:latest 0.0s WARNING! Using --password via the CLI is insecure. Use --password-stdin. Login Succeeded want to push this is upload method The push refers to repository [docker.io/emmakodes/eos2rd8] 48ee18bf7f94: Pushed a6b666839b0f: Mounted from emmakodes/eos8c0o ab6b77a32310: Mounted from emmakodes/eos8c0o b38524e165b3: Mounted from emmakodes/eos8c0o d8ff78d6be4b: Mounted from emmakodes/eos8c0o 6eebd6f03365: Mounted from emmakodes/eos8c0o b552ab943a9a: Mounted from emmakodes/eos8c0o 5f70bf18a086: Mounted from emmakodes/eos8c0o ac388d012914: Mounted from emmakodes/eos8c0o 7bd2d30bdfa9: Mounted from emmakodes/eos8c0o 18fc9f968310: Mounted from emmakodes/eos8c0o ae2d55769c5e: Mounted from emmakodes/eos8c0o e2ef8a51359d: Mounted from emmakodes/eos8c0o latest: digest: sha256:bc92f20ef7d4ccc2b123e0b306d47636abc5b204344368c6eef2d4348c1cc234 size: 3039