diff --git a/CHANGELOG.md b/CHANGELOG.md index 547ac44..d74aa9e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -1,5 +1,9 @@ # Changelog +## v0.2.1 (27.05.2020) + +- Fix building docs on ReadTheDocs + ## v0.2.0 (27.05.2020) - Refactoring the package with changing some low-level API diff --git a/docs/conf.py b/docs/conf.py index 4a12bcb..8551d59 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -10,34 +10,27 @@ # add these directories to sys.path here. If the directory is relative to the # documentation root, use os.path.abspath to make it absolute, like shown here. -import sys -import pathlib -import toml -import re - -ROOT_PATH = pathlib.Path(__file__).parent.parent - -sys.path.insert(0, str(ROOT_PATH)) - - -with (ROOT_PATH / 'pyproject.toml').open() as fp: - pyproject_toml = toml.load(fp) - - -def get_author(): - authors = pyproject_toml['tool']['poetry']['authors'] - return re.sub(r'<.+>', '', authors[0]).strip() +from importlib_metadata import metadata, PackageNotFoundError # -- Project information ----------------------------------------------------- - -project = pyproject_toml['tool']['poetry']['name'] -author = get_author() +PACKAGE_NAME = 'scikit-mpe' + +try: + project_metadata = metadata(PACKAGE_NAME) +except PackageNotFoundError: + raise RuntimeError( + f"The package '{PACKAGE_NAME}' must be installed. " + "Please install the package in editable mode before building docs." + ) + +project = project_metadata['name'] +author = project_metadata['author'] copyright = f'2020, {author}' # The full version, including alpha/beta/rc tags -version = pyproject_toml['tool']['poetry']['version'] -release = pyproject_toml['tool']['poetry']['version'] +version = project_metadata['version'] +release = version # -- General configuration --------------------------------------------------- diff --git a/poetry.lock b/poetry.lock index 4f2ef7b..f36dfda 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,8 +1,8 @@ [[package]] -category = "dev" +category = "main" description = "A configurable sidebar-enabled Sphinx theme" name = "alabaster" -optional = false +optional = true python-versions = "*" version = "0.7.12" @@ -13,7 +13,7 @@ marker = "sys_platform == \"win32\"" name = "atomicwrites" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "1.3.0" +version = "1.4.0" [[package]] category = "dev" @@ -30,10 +30,10 @@ docs = ["sphinx", "zope.interface"] tests = ["coverage", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "zope.interface"] [[package]] -category = "dev" +category = "main" description = "Internationalization utilities" name = "babel" -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" version = "2.8.0" @@ -41,15 +41,15 @@ version = "2.8.0" pytz = ">=2015.7" [[package]] -category = "dev" +category = "main" description = "Python package for providing Mozilla's CA Bundle." name = "certifi" optional = false python-versions = "*" -version = "2019.11.28" +version = "2020.4.5.1" [[package]] -category = "dev" +category = "main" description = "Universal encoding detector for Python 2 and 3" name = "chardet" optional = false @@ -57,7 +57,7 @@ python-versions = "*" version = "3.0.4" [[package]] -category = "dev" +category = "main" description = "Cross-platform colored terminal text." marker = "sys_platform == \"win32\"" name = "colorama" @@ -71,7 +71,7 @@ description = "Code coverage measurement for Python" name = "coverage" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" -version = "5.0.3" +version = "5.1" [package.extras] toml = ["toml"] @@ -82,7 +82,7 @@ description = "Show coverage stats online via coveralls.io" name = "coveralls" optional = false python-versions = "*" -version = "1.10.0" +version = "1.11.1" [package.dependencies] coverage = ">=3.6,<6.0" @@ -90,10 +90,10 @@ docopt = ">=0.6.1" requests = ">=1.0.0" [package.extras] -yaml = ["PyYAML (>=3.10)"] +yaml = ["PyYAML (>=3.10,<5.3)"] [[package]] -category = "dev" +category = "main" description = "Composable style cycles" name = "cycler" optional = false @@ -113,12 +113,12 @@ python-versions = "*" version = "0.6" [[package]] -category = "dev" +category = "main" description = "Decorators for Humans" name = "decorator" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*" -version = "4.4.1" +version = "4.4.2" [[package]] category = "dev" @@ -129,34 +129,29 @@ python-versions = "*" version = "0.6.2" [[package]] -category = "dev" +category = "main" description = "Docutils -- Python Documentation Utilities" name = "docutils" -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" version = "0.16" [[package]] category = "dev" -description = "Discover and load entry points from installed packages." -name = "entrypoints" -optional = false -python-versions = ">=2.7" -version = "0.3" - -[[package]] -category = "dev" -description = "the modular source code checker: pep8, pyflakes and co" +description = "the modular source code checker: pep8 pyflakes and co" name = "flake8" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "3.7.9" +python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,>=2.7" +version = "3.8.2" [package.dependencies] -entrypoints = ">=0.3.0,<0.4.0" mccabe = ">=0.6.0,<0.7.0" -pycodestyle = ">=2.5.0,<2.6.0" -pyflakes = ">=2.1.0,<2.2.0" +pycodestyle = ">=2.6.0a1,<2.7.0" +pyflakes = ">=2.2.0,<2.3.0" + +[package.dependencies.importlib-metadata] +python = "<3.8" +version = "*" [[package]] category = "dev" @@ -170,20 +165,20 @@ version = "0.1.6" flake8 = ">3.0.0" [[package]] -category = "dev" +category = "main" description = "Internationalized Domain Names in Applications (IDNA)" name = "idna" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.8" +version = "2.9" [[package]] -category = "dev" +category = "main" description = "Library for reading and writing a wide range of image, video, scientific, and volumetric data formats." name = "imageio" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.6.1" +python-versions = ">=3.5" +version = "2.8.0" [package.dependencies] numpy = "*" @@ -197,10 +192,10 @@ gdal = ["gdal"] itk = ["itk"] [[package]] -category = "dev" +category = "main" description = "Getting image size from png/jpeg/jpeg2000/gif file" name = "imagesize" -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" version = "1.2.0" @@ -220,12 +215,12 @@ docs = ["sphinx", "rst.linker"] testing = ["packaging", "importlib-resources"] [[package]] -category = "dev" +category = "main" description = "A very fast and expressive template engine." name = "jinja2" -optional = false +optional = true python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "2.11.1" +version = "2.11.2" [package.dependencies] MarkupSafe = ">=0.23" @@ -234,21 +229,18 @@ MarkupSafe = ">=0.23" i18n = ["Babel (>=0.8)"] [[package]] -category = "dev" +category = "main" description = "A fast implementation of the Cassowary constraint solver" name = "kiwisolver" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "1.1.0" - -[package.dependencies] -setuptools = "*" +python-versions = ">=3.6" +version = "1.2.0" [[package]] -category = "dev" +category = "main" description = "Markdown and reStructuredText in a single file." name = "m2r" -optional = false +optional = true python-versions = "*" version = "0.2.1" @@ -257,20 +249,20 @@ docutils = "*" mistune = "*" [[package]] -category = "dev" +category = "main" description = "Safely add untrusted strings to HTML/XML markup." name = "markupsafe" -optional = false +optional = true python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*" version = "1.1.1" [[package]] -category = "dev" +category = "main" description = "Python plotting package" name = "matplotlib" optional = false python-versions = ">=3.6" -version = "3.1.3" +version = "3.2.1" [package.dependencies] cycler = ">=0.10" @@ -288,10 +280,10 @@ python-versions = "*" version = "0.6.1" [[package]] -category = "dev" +category = "main" description = "The fastest markdown parser in pure Python" name = "mistune" -optional = false +optional = true python-versions = "*" version = "0.8.4" @@ -301,10 +293,10 @@ description = "More routines for operating on iterables, beyond itertools" name = "more-itertools" optional = false python-versions = ">=3.5" -version = "8.2.0" +version = "8.3.0" [[package]] -category = "dev" +category = "main" description = "Python package for creating and manipulating graphs and networks" name = "networkx" optional = false @@ -333,13 +325,13 @@ description = "NumPy is the fundamental package for array computing with Python. name = "numpy" optional = false python-versions = ">=3.5" -version = "1.18.1" +version = "1.18.4" [[package]] -category = "dev" +category = "main" description = "Sphinx extension to support docstrings in Numpy format" name = "numpydoc" -optional = false +optional = true python-versions = "*" version = "0.9.2" @@ -348,24 +340,24 @@ Jinja2 = ">=2.3" sphinx = ">=1.6.5" [[package]] -category = "dev" +category = "main" description = "Core utilities for Python packages" name = "packaging" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "20.1" +version = "20.4" [package.dependencies] pyparsing = ">=2.0.2" six = "*" [[package]] -category = "dev" +category = "main" description = "Python Imaging Library (Fork)" name = "pillow" optional = false python-versions = ">=3.5" -version = "7.0.0" +version = "7.1.2" [[package]] category = "dev" @@ -391,21 +383,13 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" version = "1.8.1" -[[package]] -category = "dev" -description = "Get CPU info with pure Python 2 & 3" -name = "py-cpuinfo" -optional = false -python-versions = "*" -version = "5.0.0" - [[package]] category = "dev" description = "Python style guide checker" name = "pycodestyle" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.5.0" +version = "2.6.0" [[package]] category = "main" @@ -413,7 +397,7 @@ description = "Data validation and settings management using python 3.6 type hin name = "pydantic" optional = false python-versions = ">=3.6" -version = "1.4" +version = "1.5.1" [package.dependencies] [package.dependencies.dataclasses] @@ -431,23 +415,23 @@ description = "passive checker of Python programs" name = "pyflakes" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.1.1" +version = "2.2.0" [[package]] -category = "dev" +category = "main" description = "Pygments is a syntax highlighting package written in Python." name = "pygments" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "2.5.2" +optional = true +python-versions = ">=3.5" +version = "2.6.1" [[package]] -category = "dev" +category = "main" description = "Python parsing module" name = "pyparsing" optional = false python-versions = ">=2.6, !=3.0.*, !=3.1.*, !=3.2.*" -version = "2.4.6" +version = "2.4.7" [[package]] category = "dev" @@ -455,7 +439,7 @@ description = "pytest: simple powerful testing with Python" name = "pytest" optional = false python-versions = ">=3.5" -version = "5.3.5" +version = "5.4.2" [package.dependencies] atomicwrites = ">=1.0" @@ -475,40 +459,23 @@ version = ">=0.12" checkqa-mypy = ["mypy (v0.761)"] testing = ["argcomplete", "hypothesis (>=3.56)", "mock", "nose", "requests", "xmlschema"] -[[package]] -category = "dev" -description = "A ``pytest`` fixture for benchmarking code. It will group the tests into rounds that are calibrated to the chosen timer. See calibration_ and FAQ_." -name = "pytest-benchmark" -optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "3.2.3" - -[package.dependencies] -py-cpuinfo = "*" -pytest = ">=3.8" - -[package.extras] -aspect = ["aspectlib"] -elasticsearch = ["elasticsearch"] -histogram = ["pygal", "pygaljs"] - [[package]] category = "dev" description = "Pytest plugin for measuring coverage." name = "pytest-cov" optional = false -python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" -version = "2.8.1" +python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" +version = "2.9.0" [package.dependencies] coverage = ">=4.4" pytest = ">=3.6" [package.extras] -testing = ["fields", "hunter", "process-tests (2.0.2)", "six", "virtualenv"] +testing = ["fields", "hunter", "process-tests (2.0.2)", "six", "pytest-xdist", "virtualenv"] [[package]] -category = "dev" +category = "main" description = "Extensions to the standard Python datetime module" name = "python-dateutil" optional = false @@ -519,15 +486,15 @@ version = "2.8.1" six = ">=1.5" [[package]] -category = "dev" +category = "main" description = "World timezone definitions, modern and historical" name = "pytz" -optional = false +optional = true python-versions = "*" -version = "2019.3" +version = "2020.1" [[package]] -category = "dev" +category = "main" description = "PyWavelets, wavelet transform module" name = "pywavelets" optional = false @@ -538,21 +505,21 @@ version = "1.1.1" numpy = ">=1.13.3" [[package]] -category = "dev" +category = "main" description = "Python HTTP for Humans." name = "requests" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -version = "2.22.0" +version = "2.23.0" [package.dependencies] certifi = ">=2017.4.17" -chardet = ">=3.0.2,<3.1.0" -idna = ">=2.5,<2.9" +chardet = ">=3.0.2,<4" +idna = ">=2.5,<3" urllib3 = ">=1.21.1,<1.25.0 || >1.25.0,<1.25.1 || >1.25.1,<1.26" [package.extras] -security = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)"] +security = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)"] socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7)", "win-inet-pton"] [[package]] @@ -567,7 +534,7 @@ version = "2019.1.30" numpy = ">=1.0.2" [[package]] -category = "dev" +category = "main" description = "Image processing routines for SciPy" name = "scikit-image" optional = false @@ -599,28 +566,28 @@ version = "1.4.1" numpy = ">=1.13.3" [[package]] -category = "dev" +category = "main" description = "Python 2 and 3 compatibility utilities" name = "six" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" -version = "1.14.0" +version = "1.15.0" [[package]] -category = "dev" +category = "main" description = "This package provides 26 stemmers for 25 languages generated from Snowball algorithms." name = "snowballstemmer" -optional = false +optional = true python-versions = "*" version = "2.0.0" [[package]] -category = "dev" +category = "main" description = "Python documentation generator" name = "sphinx" -optional = false +optional = true python-versions = ">=3.5" -version = "2.3.1" +version = "2.4.4" [package.dependencies] Jinja2 = ">=2.3" @@ -643,46 +610,49 @@ sphinxcontrib-serializinghtml = "*" [package.extras] docs = ["sphinxcontrib-websupport"] -test = ["pytest", "pytest-cov", "html5lib", "flake8 (>=3.5.0)", "flake8-import-order", "mypy (>=0.761)", "docutils-stubs"] +test = ["pytest (<5.3.3)", "pytest-cov", "html5lib", "flake8 (>=3.5.0)", "flake8-import-order", "mypy (>=0.761)", "docutils-stubs"] [[package]] -category = "dev" -description = "" +category = "main" +description = "sphinxcontrib-applehelp is a sphinx extension which outputs Apple help books" name = "sphinxcontrib-applehelp" -optional = false -python-versions = "*" -version = "1.0.1" +optional = true +python-versions = ">=3.5" +version = "1.0.2" [package.extras] -test = ["pytest", "flake8", "mypy"] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] [[package]] -category = "dev" -description = "" +category = "main" +description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document." name = "sphinxcontrib-devhelp" -optional = false -python-versions = "*" -version = "1.0.1" +optional = true +python-versions = ">=3.5" +version = "1.0.2" [package.extras] -test = ["pytest", "flake8", "mypy"] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] [[package]] -category = "dev" -description = "" +category = "main" +description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" name = "sphinxcontrib-htmlhelp" -optional = false -python-versions = "*" -version = "1.0.2" +optional = true +python-versions = ">=3.5" +version = "1.0.3" [package.extras] -test = ["pytest", "flake8", "mypy", "html5lib"] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest", "html5lib"] [[package]] -category = "dev" +category = "main" description = "A sphinx extension which renders display math in HTML via JavaScript" name = "sphinxcontrib-jsmath" -optional = false +optional = true python-versions = ">=3.5" version = "1.0.1" @@ -690,46 +660,40 @@ version = "1.0.1" test = ["pytest", "flake8", "mypy"] [[package]] -category = "dev" -description = "" +category = "main" +description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document." name = "sphinxcontrib-qthelp" -optional = false -python-versions = "*" -version = "1.0.2" +optional = true +python-versions = ">=3.5" +version = "1.0.3" [package.extras] -test = ["pytest", "flake8", "mypy"] +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] [[package]] -category = "dev" -description = "" +category = "main" +description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)." name = "sphinxcontrib-serializinghtml" -optional = false -python-versions = "*" -version = "1.1.3" +optional = true +python-versions = ">=3.5" +version = "1.1.4" [package.extras] -test = ["pytest", "flake8", "mypy"] - -[[package]] -category = "dev" -description = "Python Library for Tom's Obvious, Minimal Language" -name = "toml" -optional = false -python-versions = "*" -version = "0.10.0" +lint = ["flake8", "mypy", "docutils-stubs"] +test = ["pytest"] [[package]] -category = "dev" +category = "main" description = "HTTP library with thread-safe connection pooling, file post, and more." name = "urllib3" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, <4" -version = "1.25.8" +version = "1.25.9" [package.extras] brotli = ["brotlipy (>=0.6.0)"] -secure = ["pyOpenSSL (>=0.14)", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "certifi", "ipaddress"] +secure = ["certifi", "cryptography (>=1.3.4)", "idna (>=2.0.0)", "pyOpenSSL (>=0.14)", "ipaddress"] socks = ["PySocks (>=1.5.6,<1.5.7 || >1.5.7,<2.0)"] [[package]] @@ -738,7 +702,7 @@ description = "Measures number of Terminal column cells of wide-character codes" name = "wcwidth" optional = false python-versions = "*" -version = "0.1.8" +version = "0.1.9" [[package]] category = "main" @@ -746,14 +710,17 @@ description = "Backport of pathlib-compatible object wrapper for zip files" name = "zipp" optional = false python-versions = ">=3.6" -version = "2.1.0" +version = "3.1.0" [package.extras] docs = ["sphinx", "jaraco.packaging (>=3.2)", "rst.linker (>=1.9)"] -testing = ["jaraco.itertools"] +testing = ["jaraco.itertools", "func-timeout"] + +[extras] +docs = ["sphinx", "numpydoc", "m2r", "matplotlib", "scikit-image"] [metadata] -content-hash = "1e783913dab16e2b18765fa9af2b7cbd6686aed5acf72283cbd8eef21bc0ecee" +content-hash = "d2a8e07f17aa1ce4f0392bbc74e4b4ef5816238e0ead5c671b5b87d300483060" python-versions = "^3.6" [metadata.files] @@ -762,8 +729,8 @@ alabaster = [ {file = "alabaster-0.7.12.tar.gz", hash = "sha256:a661d72d58e6ea8a57f7a86e37d86716863ee5e92788398526d58b26a4e4dc02"}, ] atomicwrites = [ - {file = "atomicwrites-1.3.0-py2.py3-none-any.whl", hash = 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importlib-metadata = "^1.6.0" +# docs +sphinx = { version = "^2.3.1", optional = true } +numpydoc = { version = "^0.9.2", optional = true } +m2r = { version = "^0.2.1", optional = true } +matplotlib = { version = "^3.1.3", optional = true } +scikit-image = { version = "^0.16.2", optional = true } + [tool.poetry.dev-dependencies] flake8 = "^3.7.9" flake8-colors = "^0.1.6" pytest = "^5.3.5" -pytest-benchmark = "^3.2.3" pytest-cov = "^2.8.1" coveralls = "^1.10.0" -sphinx = "^2.3.1" -numpydoc = "^0.9.2" -toml = "^0.10.0" -matplotlib = "^3.1.3" scikit-image = "^0.16.2" -m2r = "^0.2.1" + +[tool.poetry.extras] +docs = ["sphinx", "numpydoc", "m2r", "matplotlib", "scikit-image"] [build-system] requires = ["poetry>=0.12"] diff --git a/skmpe/__init__.py b/skmpe/__init__.py index fae45be..7b9b8ef 100644 --- a/skmpe/__init__.py +++ b/skmpe/__init__.py @@ -1,6 +1,6 @@ # -*- coding: utf-8 -*- -from importlib_metadata import metadata, PackageNotFoundError +from importlib_metadata import version, PackageNotFoundError from ._base import ( InitialInfo, @@ -32,7 +32,7 @@ try: - __version__ = metadata('scikit-mpe')['version'] + __version__ = version('scikit-mpe') except PackageNotFoundError: # pragma: no cover __version__ = '0.0.0.dev' diff --git a/tox.ini b/tox.ini index 05f4520..e442f7f 100644 --- a/tox.ini +++ b/tox.ini @@ -7,29 +7,25 @@ basepython = python3 [testenv] recreate = true -whitelist_externals = poetry skip_install = true +whitelist_externals = poetry commands = poetry install - poetry run pytest tests/ --color=yes {posargs} -v + poetry run pytest tests/ -v --color=yes {posargs} [testenv:py37-pytest-coverage] -recreate = true -whitelist_externals = poetry -skip_install = true passenv = TRAVIS TRAVIS_* commands = poetry install - poetry run pytest tests/ --cov=skmpe --color=yes {posargs} -v + poetry run pytest tests/ -v --color=yes --cov=skmpe {posargs} coveralls [testenv:docs] -whitelist_externals = make commands = - poetry install - make -C docs/ html + poetry install --no-dev --extras docs + poetry run make -C docs/ html [testenv:flake8] deps =