From 02efecacc51c6616af748016df0181c10b41bd90 Mon Sep 17 00:00:00 2001 From: Aleksey Zimin Date: Thu, 23 Jun 2022 17:55:27 -0400 Subject: [PATCH] do not install jellyfish by default: installing jellyfish by default breaks bioconda compatibility --- install_krakenuniq.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/install_krakenuniq.sh b/install_krakenuniq.sh index d45bd47..1a37f39 100755 --- a/install_krakenuniq.sh +++ b/install_krakenuniq.sh @@ -39,7 +39,7 @@ On MacOS, if you experience the error \"clang: fatal error: unsupported option ' " -while getopts "Cshc:gl:" OPTION; do +while getopts "Chjc:gl:" OPTION; do case $OPTION in c) MAKE_ARGS="CXX=\"$OPTARG\"" ;; C) MAKE_CLEAN="" ;;