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feature: add support for eggnog-mapper #129

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feature: add support for eggnog-mapper #129

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@franciscozorrilla franciscozorrilla commented Jun 9, 2023 •
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🥚 eggNOG-mapper for better functional annotation 🍸

🐍 Snakefile tasks

  • create eggnog-mapper rule for processing ORF-annotated protein fasta files of genomes
  • create helper/supplementary rule to deal with large number of genomes (e.g. per sample submission of jobs)

🔨 Additional modifications for full integration/support

  • metaGEM.sh: add options + support for new tasks
  • config.yaml: add params used in new tasks
  • config readme file: eggnog-mapper could go in main metaGEM env
  • conda recipe: update
  • main readme file: text and eventually figure

@franciscozorrilla
feature: add Snakefile rule for eggnog-mapper
179646a 
create Snakefile rule to annotate genomes with eggnog-mapper
@franciscozorrilla franciscozorrilla self-assigned this Jun 9, 2023
@franciscozorrilla franciscozorrilla added enhancement New feature or request method Novel or alternative conceptual method labels Jun 9, 2023
@franciscozorrilla
Update Snakefile
ab7e8f6 
add line to create dummy output folder, still need to replace hardcoded cores number with new param, same with eggnog env
@franciscozorrilla
Update Snakefile eggnog_mapper rule
725928f
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