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Crash on SNV module #21
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Hi @adbeggs Which install did you use for Spectre pip or the local installation? Local installation with pip: pip install build
git clone https://github.com/fritzsedlazeck/Spectre.git
cd ./Spectre
python3 -m build
pip install dist/spectre-cnv-<VERSION>.tar.gz # replace <VERSION> with e.g. 0.2.0 Please let me know if that fixed the issue for the time being. |
Hi Phillipe
My bad, must have missed a commit, I will try again
A
From: Philippe Sanio ***@***.***>
Sent: Tuesday, April 23, 2024 1:26 PM
To: fritzsedlazeck/Spectre ***@***.***>
Cc: Andrew Beggs (Cancer and Genomic Sciences) ***@***.***>; Mention ***@***.***>
Subject: Re: [fritzsedlazeck/Spectre] Crash on SNV module (Issue #21)
CAUTION: This email originated from outside the organisation. Do not click links or open attachments unless you recognise the sender and know the content is safe.
Hi @adbeggs<https://github.com/adbeggs>
Which install did you use for Spectre pip or the local installation?
This issue has been fixed two commits ago (0e96275<0e96275>) and is already part of the local installation. The changes will be part of the new pip version 0.2.1. However, the new version will be pushed after we have addressed some changes to the population mode.
Local installation with pip:
pip install build
git clone https://github.com/fritzsedlazeck/Spectre.git
cd ./Spectre
python3 -m build
pip install dist/spectre-cnv-<VERSION>.tar.gz # replace <VERSION> with e.g. 0.2.0
Please let me know if that fixed the issue for the time being.
Thanks,
Philippe
—
Reply to this email directly, view it on GitHub<#21 (comment)>, or unsubscribe<https://github.com/notifications/unsubscribe-auth/AC7KTDCIHMOTL3WOX64HPW3Y6ZHNBAVCNFSM6AAAAABGUX57PWVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMZDANZSGE3DMMBSHE>.
You are receiving this because you were mentioned.Message ID: ***@***.***>
|
Hi @adbeggs Just wanted to check if the new Spectre version 0.2.1 fixed your issues? Cheers, |
First attempt since my last round of queries... running with Clair3 SNVs and get:
The text was updated successfully, but these errors were encountered: