tweaks to the submodule sym links (#57)

ga4gh · Oct 11, 2024 · b527d09 · b527d09
1 parent e387354
commit b527d09
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Showing 7 changed files with 7 additions and 5 deletions.
diff --git a/docs/source/appendices/index.rst b/docs/source/appendices/index.rst
@@ -2,7 +2,7 @@ Appendices
 !!!!!!!!!!
 
 
-.. TODO:: Either add general landing page material for all appendices here or include the content of the different subsections directly.
+.. todo:: Either add general landing page material for all appendices here or include the content of the different subsections directly.
 
 
 .. toctree::

diff --git a/docs/source/conf.py b/docs/source/conf.py
@@ -25,7 +25,7 @@ def _get_git_tag():
     return tag
 
 def _parse_release_as_version(rls):
-    m = re.match("^(\d+\.\d+)", rls)
+    m = re.match(r"^(\d+\.\d+)", rls)
     if m:
         return m.group(1)
     return rls

diff --git a/schema/cat-vrs/core/cat-vrs-core-source.yaml b/schema/cat-vrs/core/cat-vrs-core-source.yaml
@@ -83,6 +83,7 @@ $defs:
         type: array
         ordered: false
         items:
+          type: string
           enum:
             - sequence_liftover
             - transcript_projection

diff --git a/schema/cat-vrs/core/def/DefiningContextConstraint.rst b/schema/cat-vrs/core/def/DefiningContextConstraint.rst
@@ -25,6 +25,6 @@ Some DefiningContextConstraint attributes are inherited from :ref:`Constraint`.
       - 1..1
       - 
    *  - relations
-      - _Not Specified_
+      - string
       - 0..m
       - Defined relationships between members of the categorical variant and the defining context. ``sequence_liftover`` refers to variants or locations that represent a congruent concept on a differing assembly of a human genome (e.g. "GRCh37" and "GRCh38") or gene (e.g. Locus Reference Genomic) sequence. ``transcript_projection`` refers to variants or locations that occur on transcripts projected from the defined genomic concept. ``codon_translation`` refers to variants or locations that translate from the codon(s) represented by the defined concept.
diff --git a/schema/cat-vrs/core/json/DefiningContextConstraint b/schema/cat-vrs/core/json/DefiningContextConstraint
@@ -29,6 +29,7 @@
          "type": "array",
          "ordered": false,
          "items": {
+            "type": "string",
             "enum": [
                "sequence_liftover",
                "transcript_projection",

diff --git a/schema/core-im b/schema/core-im
@@ -1 +1 @@
-../submodules/vrs/schema/core-im
+../submodules/vrs/submodules/gks-common/schema/core-im
diff --git a/schema/domain-entities b/schema/domain-entities
@@ -1 +1 @@
-../submodules/vrs/schema/domain-entities
+../submodules/vrs/submodules/gks-common/schema/domain-entities