Update GHA #939

	name: Build

	on: [push,pull_request]

	jobs:
	build-linux:
	runs-on: ubuntu-latest
	# container:
	# image: mambaorg/micromamba:latest

	steps:
	- uses: actions/checkout@v2

	- name: Setup environment with micromamba
	uses: mamba-org/setup-micromamba@v1
	with:
	environment-file: environment.yml
	cache-environment: true

	- name: Check micromamba install
	shell: bash -l {0}
	run: \|
	micromamba --version
	micromamba env list

	# - name: Install dependencies
	# run: mamba env update -f environment.yml

	- name: Lint with flake8
	shell: bash -l {0}
	run: \|
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --builtins="snakemake" --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics

	- name: Install DROP
	shell: bash -l {0}
	run: pip install -e .

	- name: Test with pytest
	shell: bash -l {0}
	env:
	GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
	run: \|
	micromamba install pytest
	pip install -r tests/requirements.txt
	pytest

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