._travis.yml

language: python
dist: xenial

python:
  - "3.7"

install:
  # Install Anaconda
  - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O /tmp/miniconda.sh
  - bash /tmp/miniconda.sh -b -p $HOME/miniconda
  - export PATH="$HOME/miniconda/bin:$PATH"
  - hash -r
  - conda config --set always_yes yes --set changeps1 no
  - conda update -q conda

  # install dependencies
  - source $HOME/miniconda/etc/profile.d/conda.sh
  - conda create -q -n drop -c conda-forge -c bioconda "python>=${TRAVIS_PYTHON_VERSION}" "r-base>=4.0.3" "drop>=1.0.1" "wbuild>=1.8" "bioconductor-fraser>=1.2.0"
  # remove FRASER to check installation routine
  - conda remove -n drop --force drop bioconductor-fraser
  - conda activate drop
  - pip install -r tests/requirements.txt

  # install drop
  - pip install . -vv

script: 
  - conda list 
  - java -version
  - gatk --help
  - samtools --version
  - bcftools --version
  - drop --version
  - wbuild --version
  - python --version

  - travis_wait 50 pytest --durations=10 --durations-min=1.0