-
Notifications
You must be signed in to change notification settings - Fork 45
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Chunk options #+echo
not correctly parsed
#532
Comments
votti
pushed a commit
to FroeseLab/drop
that referenced
this issue
Apr 15, 2024
Fixes: gagneurlab#532 As described in the issue, there recent versions of `knitr` wrongly converted `#+argument` comments without a space before the argumnet into `{rargument}`. Adding a space fixes this.
Many thanks! I also noticed this on Friday. I'm meeting the rest of the development meeting later today to address this today! |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Symptom
Running the demo data I got errors:
Pipeline_SampleAnnotation_R:
MonoallelicExpression_pipeline_MAE_Results_R:
Debugging
Investigating I noticed these errors were directly downstream of
#+echo=F
.Manually converting the
R
script usingknitr:spin
I noticed that this accidentally gets converted into:The text was updated successfully, but these errors were encountered: