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Freeze version #544

Merged
merged 32 commits into from
May 17, 2024
Merged

Freeze version #544

merged 32 commits into from
May 17, 2024

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vyepez88
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@vyepez88 vyepez88 commented May 16, 2024 •
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  • fixes error introduced by the new version of knitr (Issue Chunk options #+echo not correctly parsed #532)
  • removes redundant rules to create dict and fai files in MAE pipeline
  • corrects the case where no significant results were generated in FRASER
  • fix OUTRIDER and FRASER versions

ischeller and others added 30 commits May 11, 2023 13:55
@ischeller
fix result script in case of no significant results
c784771
@ischeller
Merge branch 'master' into dev
c475eff
@vyepez88
fix bug merge in wrong order coverage dt
0ade3c7
@vyepez88
Update prepare.rst
c1824a0
@ischeller
added saving of granges of split counts .as tsv.gz
87e0e2c
@vyepez88
Update DNA_RNA_matrix_plot.R
e82bfa5
@nickhsmith
change ln to softlink
a837e47
@nickhsmith
add help to index
61541d9
@nickhsmith
Merge branch 'dev' into softlink
8c59acf
@vyepez88
Merge pull request #481 from gagneurlab/softlink
25f61ea 
Softlink
@vyepez88
Update DNA_RNA_matrix_plot.R
db61173 
fix bug when multiple matching
@vyepez88
Update create_matrix_dna_rna_cor.R
177c9a9 
Remove unnecessary step for the QC matrix
@vyepez88
Update DNA_RNA_matrix_plot.R
e6520fd 
fix bug in not annotated QC table
@vyepez88
Update DNA_RNA_matrix_plot.R
e72f8ec 
fix bug in check matches function
@vyepez88
Update DNA_RNA_matrix_plot.R
b87b11c
@vyepez88
Update README.md
95106ce
@vyepez88
Update README.md
d3dc035
@vyepez88
Update README.md
ae4e074
@vyepez88
Update README.md
1d2fd5a
@vyepez88
Update 08_extract_results_FraseR.R
f16e45a
@vyepez88
Update README.md
d57da3c
@c-mertes
update GHA with snakemake version range and activate PR checks
3b34f53
@c-mertes
fix #532 knitr parsing
ec9628f
@c-mertes
remove redundent rules to create dict and fai files
eb218f3
@AtaJadidAhari
fix last outrider version install
f26dedf
@AtaJadidAhari
Fix FRASER and OUTRIDER versions
752edd1
@AtaJadidAhari
OUTRIDER 1.16.2 & FRASER 1.99.0
d5caf39
@AtaJadidAhari
pin OUTRIDER to 1.20.1
f9a6b8f
@AtaJadidAhari
pin FRASER to commit #d6a422c
68ccefc
@AtaJadidAhari
update version nr for bioconda
76f8607
@vyepez88 vyepez88 requested a review from ischeller May 17, 2024 13:19
@ischeller ischeller merged commit ef7e11e into master May 17, 2024
2 checks passed
@AtaJadidAhari AtaJadidAhari deleted the freeze_version branch August 14, 2024 07:58
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@ischeller ischeller ischeller approved these changes

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5 participants
@vyepez88 @ischeller @nickhsmith @c-mertes @AtaJadidAhari