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blastdbp
datatype-test-data
meme
shapefile
velvetg_test1
velveth_test1
1.bcsl.ts
1.bedgrpah_to_bigwig.bigwig
1.bool.txt
1.chira.sqlite
1.csv
1.csv_to_tabular.tabular
1.cytoscapejson
1.d3_hierarchy
1.dbn
1.fits
1.gafa.sqlite
1.geocsv
1.geojson
1.gif
1.gwas_bgzip
1.gwas_tabix.gz
1.integer.txt
1.interval_index
1.ipynb
1.jpg
1.mp3
1.mp4
1.newick
1.ogg
1.rrd
1.tabular
1.tiff
1.tsv
1.wav
13.bed
1_bed_random_lines_1_seed_asdf_out.bed
2.bed12
2.bed6
2.bedstrict
2.bgzip
2.bigwig
2.csv
2.dbn
2.fastq
2.fastqsanger
2.fastqsolexa
2.fastqsolexa.fasta
2.geojson
2.interval
2.interval.gz
2.interval_index
2.interval_to_bed.bed
2.lav
2.qualsolexa
2.sam
2.sff
2.tabix
2.txt
2.wig
3.bigwig
3.csv
3.fasta
3.fastqsanger
3.sam
3.wig
3_wig.bed
4.fasta
4.maf
454.fasta
454.qual
454_high_quality_hist.pdf
5.maf
5_liftover_mapped.bed
5_liftover_unmapped.bed
5_mult_liftover_mapped.bed
5_mult_liftover_unmapped.bed
7.bigbed
9_hg18.bed
DNAseHSS.dat
Extract_features1_out.gff
Interval2Maf_pairwise_out.maf
LICENSE
NC_001617.1.fasta
Ssuis.fasta
add_scores_input1.interval
add_scores_input2.bed
add_scores_output1.interval
add_scores_output2.interval
aggregate_binned_scores_3.bigwig
aggregate_binned_scores_3.interval
aggregate_binned_scores_3.wig
aggregate_binned_scores_in_intervals.out
aggregate_binned_scores_in_intervals2.interval
aggregate_binned_scores_in_intervals3.out
axt_to_concat_fasta.dat
axt_to_fasta.dat
bcf_index_metadata_test.bcf
bcf_uncompressed_index_metadata_test.bcf_uncompressed
beam_output1.tab
beam_output2.tab
bed2gff_out.gff
bed_filter_by_feature_count_out2.bed
bfast_out1.bam
bfast_out1.bigwig
bfast_out1.qname_sorted.bam
bfast_out1.sam
bfast_out1.unsorted.bam
bfast_out2.sam
bfast_out3.sam
bgzip_filter_by_feature_count_out2.bgzip
bgzip_to_maf_in.bgzip
blat_wrapper_test1.fa
blat_wrapper_test1.out
boxplot_summary_statistics_out.png
build_ucsc_custom_track_out1.customtrack
cca_out1.tabular
cca_out2.pdf
cell.tiff
cf-gene2exon.dat
cf_maf2fasta_concat.dat
cf_maf2fasta_new.dat
cf_maf_limit_to_species.dat
cf_maf_to_bed.dat
changeCase_out1.tabular
changeCase_out2.tabular
chr_m.bowtie_base_index
chr_m.bowtie_color_index
chr_m.fai
chr_m.fasta
chr_m.len
chr_m.linecount
chr_m.tabular
chr_m.twobit
codingSnps_input1.interval
codingSnps_input2.interval
codingSnps_inputGenes1.bed
codingSnps_inputGenes2.bed
codingSnps_output1.interval
codingSnps_output2.interval
codingSnps_output3.interval
column_maker_out1.interval
column_maker_out2.interval
column_maker_out3.interval
convert_SOLiD_color2nuc_test1.out
convert_SOLiD_color2nuc_test1.txt
cor.tabular
cor_out.txt
count_gff_features_out1.txt
count_gff_features_out2.txt
cuffcompare_in1.gtf
cuffcompare_in1_liftover_mapped.bed
cuffcompare_in1_liftover_unmapped.bed
cuffcompare_in1_mult_liftover_mapped.bed
cuffcompare_in1_mult_liftover_unmapped.bed
cufflinks_out1.gtf
cufflinks_out1.gtf.gz
customTrack1.bed
dm6.json
dna_filter_in1.tabular
dna_filter_out1.tabular
dna_filter_out2.tabular
dna_filter_out3.tabular
dna_filter_out4.tabular
droPer1.bed
droPer1.bed.gz
droPer1.bgzip
droPer1.bigwig
droPer1.fli
droPer1.gff
droPer1.interval_index
droPer1.tabix
encode.broad.peak
encode.broad.peak.gz
encode.broad.tabix
eq-addvalue.dat
eq-condense.dat
eq-convert.dat
eq-createinterval.dat
eq-cut.dat
eq-paste.dat
eq-removebeginning.dat
eq-showbeginning.dat
eq-showtail.dat
extract_genomic_dna_out1.fasta
extract_genomic_dna_out2.fasta
extract_genomic_dna_out3.interval
extract_genomic_dna_out4.gff
extract_genomic_dna_out5.fasta
extract_genomic_dna_out6.fasta
extract_genomic_dna_out7.fasta
fasta_to_tabular_out1.tabular
fasta_to_tabular_out2.tabular
fasta_to_tabular_out3.tabular
fasta_to_tabular_out4.tabular
fasta_to_tabular_out5.tabular
fasta_to_tabular_out6.tabular
fasta_tool_compute_length_1.out
fasta_tool_compute_length_2.out
fasta_tool_compute_length_3.out
fastq_conv_in1.fastq
fastq_conv_out1.fastqsanger
fastq_conv_out2.fastqsolexa
fastq_conv_out4.fasta
fastq_gen_conv_in1.fastq
fastq_gen_conv_in2.fastq
fastq_gen_conv_out1.fastqsanger
fastq_gen_conv_out2.fastqsanger
fastq_stats_1_out.tabular
fastqsolexa_to_fasta_qual_out2.fasta
fastqsolexa_to_fasta_qual_out4.fasta
filteredJoinedFlanksDNAse.dat
fli_filter_by_feature_count_out2.fli
four_human_proteins.fasta.log
fr.csfasta
fr.qualsolid
fs-compare-2.dat
fs-compare.dat
fs-grep.dat
fsa_interval2maf.dat
galaxy_freiburg.geojson
gencode.v29.annotation.bed
gencode.v29.annotation.gff3
gene_bed_maf_to_fasta_out.fasta
gene_bed_maf_to_fasta_user_out.fasta
genomes.json
gff2bed_in2.gff
gff2bed_out.bed
gff2bed_out2.bed
gff2bed_out3.bed
gff_filter_attr_in1.gff
gff_filter_by_attribute_out1.gff
gff_filter_by_attribute_out2.gff
gff_filter_by_feature_count_out1.gff
gff_filter_by_feature_count_out2.gff
gff_filter_by_feature_count_out2.gff.gz
gops_subtract_in1.gff
gops_subtract_in1_wcomment.gff
gpass_and_beam_input.map
gpass_and_beam_input.ped
gpass_output.txt
groupby_in_1.tabular
groupby_out1.dat
groupby_out2.dat
groupby_out3.tabular
groupby_out4.tabular
gsummary_out1.tabular
gtf2bedgraph_in.gtf
gtf2bedgraph_out.bedgraph
gtf_filter_by_attribute_values_list_in1.txt
gtf_filter_by_attribute_values_list_in2.gtf
gtf_filter_by_attribute_values_list_in3.csv
gtf_filter_by_attribute_values_list_in3.tabular
gtf_filter_by_attribute_values_list_out1.gtf
gtf_filter_by_attribute_values_list_out1_wcomment.gtf
gtf_filter_by_attribute_values_list_out2.gtf
hdf5.h5
hg17chr22KnownGenes.dat
histogram_in1.tabular
histogram_out1.pdf
horse.plybinary
human.vtpbinary
input_taxonomy.biom1
input_taxonomy.biom2
interval2fasta_3from28way.fasta
interval2interval_3from28way.interval
interval2maf_3from28way.maf
interval_index_filter_by_feature_count_out2.interval_index
interval_index_to_maf_in.interval_index
interval_maf_to_merged_fasta_out.dat
interval_maf_to_merged_fasta_out3.fasta
interval_maf_to_merged_fasta_user_out.dat
iris.tabular
joiner_out1.bed
joiner_out2.bed
joiner_out3.bed
joiner_out4.bed
kcca_out1.tabular
kcca_out2.tabular
knownGeneUpstream500Flanks.dat
kpca_out1.tabular
kpca_out2.pdf
lav_to_bed_out_1.bed
lav_to_bed_out_2.bed
ldInput1.txt
ldOutput1.txt
lda_analy_output.txt
linkToDavid.tabular
linkToDavid_1.out
linkToGProfile.tabular
linkToGProfile_1.out
lps_arrhythmia.tabular
lps_arrhythmia_beta.tabular
lps_arrhythmia_log.txt
maf_by_block_number_out.dat
maf_by_block_numbers.dat
maf_limit_size1_out.maf
maf_reverse_complement_out.dat
maf_split_by_species_collapsed_out.maf
maf_split_by_species_in.maf
maf_split_by_species_not_collapsed_out.maf
maf_stats_interval_out.dat
maf_stats_summary_out.dat
maf_thread_for_species.dat
maf_to_interval_out_hg17.interval
maf_to_interval_out_panTro1.interval
master2snp_output.txt
masterVarTest.txt
masterVar_output.txt
matrix_generator_for_pc_and_lda_input_1.tabular
matrix_generator_for_pc_and_lda_input_2.tabular
matrix_generator_for_pc_and_lda_output.tabular
megablast_wrapper_test1.fa
megablast_wrapper_test1.out
megablast_xml_parser_test1.gz
megablast_xml_parser_test1_out.tabular
mergeCols.dat
mosaik_test_input.fastq
mosaik_test_out.sam
mosaik_test_ref.fasta
multiple_versions_0.1.txt
multiple_versions_0.2.txt
mutation_data1.txt
mutation_data1_interactive.svg
mutation_data1_zoom3x.svg
newbox.gro
newbox.pdb
ngs_simulation_in1.fasta
ngs_simulation_out1.png
ngs_simulation_out2.tabular
ngs_simulation_out3.png
nifti.nii1.gz
output.wig
parq_conv.csv
parq_conv.parquet
pass_input.gff
pass_output.tab
pca_out1.tabular
pca_out2.pdf
pca_out3.tabular
pca_out4.pdf
pca_out5.tabular
pca_out6.pdf
perm_in1.fastqsanger
perm_in2.fastqsanger
perm_in3.fastqsanger
perm_in4.fastqcssanger
perm_in5.fastqcssanger
perm_in6.fastqcssanger
perm_out1.sam
perm_out2.sam
perm_out3.fastqsanger
perm_out4.sam
perm_out5.sam
pgSnp2snp_output.txt
pgSnpTest.ref.txt
picard_CollectHsMetrics.baits
picard_CollectHsMetrics.bed
plot_for_lda_output.pdf
qualsolid.stats
random_phiX_1.fastqcssanger
random_phiX_1.fastqsanger
rmap_wrapper_test1.bed
rmap_wrapper_test1.fasta
rmapq_wrapper_test1.bed
rmapq_wrapper_test1.fasta
rmapq_wrapper_test1.qual
rr.csfasta
rr.qualsolid
s2fq_out1.fastqsanger
s2fq_out2.fastqsanger
s2fq_out3.fastqsanger
s2fq_paired_F3.csfasta
s2fq_paired_F3_QV.qualsolid
s2fq_paired_R3.csfasta
s2fq_paired_R3_QV.qualsolid
s2fq_phiX.csfasta
s2fq_phiX.qualsolid
scatterplot_in1.tabular
scatterplot_out1.pdf
secure_hash_message_digest_out1.tabular
sff_converter_fasta.dat
sff_converter_fastq.dat
sff_converter_qual.dat
sff_converter_xml_1.dat
sff_converter_xml_2.dat
short_reads_trim_seq_out1.fasta
short_reads_trim_seq_out2.fasta
shrimp_cs_test1.out
shrimp_phix_anc.fa
shrimp_wrapper_test1.fastq
shrimp_wrapper_test1.fqtoc
shrimp_wrapper_test1.out1
sift_variants.tab
sift_variants_result.tab
snpFreqInput.txt
snpFreqTestOut.txt
solexa.fasta
solexa.qual
solexa.tabular
solexaScore.png
solexa_high_quality_hist.pdf
solid2fastq_out_1.fastq
solid2fastq_out_2.fastq
solid2fastq_out_3.fastq
sort_in1.bed
sort_in2.bed
sort_out1.bed
sort_out2.bed
sort_out3.bed
species_assignment.tabular
species_assignment_c2.tabular
species_assignment_c2_c3.tabular
species_assignment_c2_c3_largest.tabular
species_assignment_c2_c3_smallest.tabular
square.plyascii
square.vtpascii
srma_in1.bam
srma_in2.fa
srma_in3.bam
srma_in3.sam
srma_out1.bam
srma_out2.bai
srma_out2.bam
srma_out2.bigwig
tabix_filter_by_feature_count_out2.tabix
tabix_to_maf_in.tabix
tabix_to_maf_in_to_tabix.tabix
tabular_to_fasta_out1.fasta
testdir1.tar
testdir1.tar.directory
tool_recommendation_model.hdf5
tool_recommendation_model_v_0.2.hdf5
tophat_in1.fasta
traj.dcd
traj.trr
traj.xtc
trimmer_a_f_c0_s1_e13_i62.dat
trimmer_a_f_c2_s1_e2_i62.dat
trimmer_a_f_c2_s2_e-2_i62.dat
trimmer_tab_delimited.dat
uniq_out.dat
vcf2pgSnp_input.vcf
vcf2pgSnp_input.vcf.snpsiftdbnsfp
vcf2pgSnp_output.pgSnp
vcf_bgzip_to_maf_in.vcf_bgzip
vcf_to_maf_in.vcf
vcf_to_maf_in.vcf.gz
vcf_to_maf_population_out.mafcustomtrack
vcf_to_maf_sample_out.mafcustomtrack
velvet_test_reads.fa
wc_gnu_out_1.tabular
wc_gnu_out_2.tabular

2.interval_index

mvdbeek

Last set of converter outputs

Feb 13, 2020

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2.interval_index

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