From ec61361b09b9ef6a50cc2684acdf3f794c12f1cc Mon Sep 17 00:00:00 2001
From: Guo-Bo Chen <gc5k@users.noreply.github.com>
Date: Thu, 30 Dec 2021 20:56:05 +0800
Subject: [PATCH] fix bug for --mpheno

---
 GEAR/src/gear/subcommands/CommandArguments.java | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/GEAR/src/gear/subcommands/CommandArguments.java b/GEAR/src/gear/subcommands/CommandArguments.java
index 587dce27..b7b9ad09 100644
--- a/GEAR/src/gear/subcommands/CommandArguments.java
+++ b/GEAR/src/gear/subcommands/CommandArguments.java
@@ -265,8 +265,8 @@ public void setPhenotypeFile(String pheFile) {
 	public void setPhenotypeIndex(String[] pheIndex) {
 		CommandSplitter CS = new CommandSplitter.Builder(pheIndex).OPT(Command.OPT_MPHE).IntMin(1).create();
 		this.mPheno = CS.ParseToInt();
-		for(int i = 0; i < this.mPheno.length; i++) {
-			this.mPheno[i]--;
+		for (int i = 0; i < this.mPheno.length; i++) {
+//			this.mPheno[i]--;
 			if (this.mPheno[i] < 0) {
 				Logger.printUserLog("incorrect --mphe " + (mPheno[i]+1) + ". It should be > 0.");
 				System.exit(0);