From 4ba023c6eeb00448aa3f40aead33df7b269ce0e3 Mon Sep 17 00:00:00 2001 From: Raymond Lee Date: Fri, 3 May 2024 22:52:25 -0700 Subject: [PATCH 1/2] Obsoleted two terms, fixes #27758. --- src/ontology/go-edit.obo | 23 ++++++++++++++--------- 1 file changed, 14 insertions(+), 9 deletions(-) diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index 302950088d..fc8db19786 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -74438,11 +74438,13 @@ replaced_by: GO:0009055 [Term] id: GO:0008043 -name: intracellular ferritin complex +name: obsolete intracellular ferritin complex namespace: cellular_component -def: "A ferritin complex located in the cell. Intracellular ferritin complexes contain 24 subunits, in a mixture of L (light) chains and H (heavy) chains." [GOC:jl, GOC:mah, PMID:19154717] -is_a: GO:0070288 ! ferritin complex -is_a: GO:0140535 ! intracellular protein-containing complex +def: "OBSOLETE. A ferritin complex located in the cell. Intracellular ferritin complexes contain 24 subunits, in a mixture of L (light) chains and H (heavy) chains." [GOC:jl, GOC:mah, PMID:19154717] +comment: The reason for obsoletion is that this term represents a cellular component and its location. +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27758" xsd:anyURI +is_obsolete: true +replaced_by: GO:0070288 [Term] id: GO:0008044 @@ -367108,17 +367110,20 @@ is_a: GO:0038024 ! cargo receptor activity id: GO:0070288 name: ferritin complex namespace: cellular_component -def: "A protein complex that binds iron and acts as a major iron storage system. Intracellular and extracellular ferritin complexes have different ratios of two types of ferritin monomer, the L (light) chain and H (heavy) chain." [GOC:mah, PMID:19154717] +def: "A protein complex that binds iron and acts as a major iron storage system. There are three major subclasses of ferritins: the classical ferritins (Ftn), the heme-containing bacterioferritins (Bfr) and the DNA-binding proteins from starved cells (Dps). Ftn and Bfr are made of 24 subunits, whereas Dps are smaller with 12 subunits. Ftn is found in most kindoms, while Bfr and Dps are restricted to prokaryotes." [PMID:19154717] {comment="PMID:33881539"} is_a: GO:0032991 ! protein-containing complex +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27758" xsd:anyURI [Term] id: GO:0070289 -name: extracellular ferritin complex +name: obsolete extracellular ferritin complex namespace: cellular_component -def: "A ferritin complex located in the extracellular region. Extracellular ferritin complexes contain L (light) chains but few or no H (heavy) chains." [GOC:mah, PMID:19154717] +def: "OBSOLETE. A ferritin complex located in the extracellular region. Extracellular ferritin complexes contain L (light) chains but few or no H (heavy) chains." [GOC:mah, PMID:19154717] +comment: The reason for obsoletion is that this term represents a cellular component and its location. synonym: "serum ferritin complex" RELATED [PMID:19154717] -is_a: GO:0070288 ! ferritin complex -relationship: part_of GO:0005576 ! extracellular region +property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27758" xsd:anyURI +is_obsolete: true +replaced_by: GO:0070288 [Term] id: GO:0070290 From 71cc601f90ff1f47e51c16e69d5b47eaf8f178e9 Mon Sep 17 00:00:00 2001 From: Raymond Lee Date: Fri, 3 May 2024 23:05:13 -0700 Subject: [PATCH 2/2] Fixed def ref typo. --- src/ontology/go-edit.obo | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo index fc8db19786..4942d677cc 100644 --- a/src/ontology/go-edit.obo +++ b/src/ontology/go-edit.obo @@ -367110,7 +367110,7 @@ is_a: GO:0038024 ! cargo receptor activity id: GO:0070288 name: ferritin complex namespace: cellular_component -def: "A protein complex that binds iron and acts as a major iron storage system. There are three major subclasses of ferritins: the classical ferritins (Ftn), the heme-containing bacterioferritins (Bfr) and the DNA-binding proteins from starved cells (Dps). Ftn and Bfr are made of 24 subunits, whereas Dps are smaller with 12 subunits. Ftn is found in most kindoms, while Bfr and Dps are restricted to prokaryotes." [PMID:19154717] {comment="PMID:33881539"} +def: "A protein complex that binds iron and acts as a major iron storage system. There are three major subclasses of ferritins: the classical ferritins (Ftn), the heme-containing bacterioferritins (Bfr) and the DNA-binding proteins from starved cells (Dps). Ftn and Bfr are made of 24 subunits, whereas Dps are smaller with 12 subunits. Ftn is found in most kindoms, while Bfr and Dps are restricted to prokaryotes." [PMID:19154717, PMID:33881539] is_a: GO:0032991 ! protein-containing complex property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/27758" xsd:anyURI